Your job contains 1 sequence.
>010679
MGSKGRIPPPHLRRPPPGPGMMHPDPFVSGMRPPMPGAFPPFDMMPPPEVMEQKIASQHV
EMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEA
ELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESL
RQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRAADGS
YGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQS
GTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQK
GSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVY
EAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNV
PYGSATPPARSGSGQPRGGNPARR
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 010679
(504 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2033681 - symbol:AT1G67170 "AT1G67170" species... 867 9.9e-87 1
TAIR|locus:2089616 - symbol:AT3G14750 "AT3G14750" species... 419 2.9e-39 1
TAIR|locus:2035751 - symbol:AT1G55170 "AT1G55170" species... 340 6.9e-31 1
TAIR|locus:2156146 - symbol:AT5G61920 "AT5G61920" species... 292 2.2e-25 1
FB|FBgn0085362 - symbol:Vml "Vitelline membrane-like" spe... 284 3.4e-22 1
TAIR|locus:2060848 - symbol:AT2G30120 species:3702 "Arabi... 221 1.6e-17 1
UNIPROTKB|A2VD00 - symbol:eif3a "Eukaryotic translation i... 195 9.1e-15 2
UNIPROTKB|A4II09 - symbol:eif3a "Eukaryotic translation i... 186 1.3e-14 2
UNIPROTKB|F1S187 - symbol:LOC100518332 "Uncharacterized p... 204 1.4e-13 1
UNIPROTKB|P11414 - symbol:POLR2A "DNA-directed RNA polyme... 173 6.0e-10 1
SGD|S000002299 - symbol:RPO21 "RNA polymerase II largest ... 191 7.6e-10 2
UNIPROTKB|F1PB61 - symbol:TAF15 "Uncharacterized protein"... 155 1.2e-09 2
FB|FBgn0028573 - symbol:prc "pericardin" species:7227 "Dr... 173 3.8e-09 1
WB|WBGene00020550 - symbol:T17H7.1 species:6239 "Caenorha... 168 4.1e-09 1
UNIPROTKB|P71590 - symbol:fhaA "FHA domain-containing pro... 162 1.2e-08 1
UNIPROTKB|Q92804 - symbol:TAF15 "TATA-binding protein-ass... 162 1.5e-08 1
WB|WBGene00044109 - symbol:K02E11.10 species:6239 "Caenor... 154 4.4e-08 1
DICTYBASE|DDB_G0277909 - symbol:cbpP "calcium-binding pro... 155 5.8e-08 1
FB|FBgn0050203 - symbol:CG30203 species:7227 "Drosophila ... 157 9.9e-08 1
WB|WBGene00005015 - symbol:spt-5 species:6239 "Caenorhabd... 158 1.1e-07 1
UNIPROTKB|Q21338 - symbol:spt-5 "Transcription elongation... 158 1.1e-07 1
WB|WBGene00002280 - symbol:let-2 species:6239 "Caenorhabd... 159 1.3e-07 1
UNIPROTKB|P17140 - symbol:let-2 "Collagen alpha-2(IV) cha... 159 1.3e-07 1
MGI|MGI:1330280 - symbol:Krtap6-2 "keratin associated pro... 128 1.9e-07 1
WB|WBGene00000123 - symbol:ama-1 species:6239 "Caenorhabd... 157 2.3e-07 1
UNIPROTKB|P16356 - symbol:ama-1 "DNA-directed RNA polymer... 157 2.3e-07 1
WB|WBGene00001215 - symbol:ego-2 species:6239 "Caenorhabd... 136 2.4e-07 2
ZFIN|ZDB-GENE-030131-5725 - symbol:arid1ab "AT rich inter... 157 3.4e-07 2
UNIPROTKB|J3KNM7 - symbol:COL4A4 "Collagen alpha-4(IV) ch... 153 5.5e-07 1
UNIPROTKB|P53420 - symbol:COL4A4 "Collagen alpha-4(IV) ch... 153 5.6e-07 1
WB|WBGene00004203 - symbol:swsn-1 species:6239 "Caenorhab... 149 6.0e-07 1
UNIPROTKB|D4ADB1 - symbol:D4ADB1 "Uncharacterized protein... 148 6.3e-07 1
FB|FBgn0035872 - symbol:CG7185 species:7227 "Drosophila m... 141 6.6e-07 2
TAIR|locus:2012713 - symbol:AT1G33680 "AT1G33680" species... 144 9.7e-07 2
UNIPROTKB|I3LQ53 - symbol:I3LQ53 "Uncharacterized protein... 144 1.2e-06 1
UNIPROTKB|P02457 - symbol:COL1A1 "Collagen alpha-1(I) cha... 149 1.3e-06 1
UNIPROTKB|D3ZZM1 - symbol:Taf15 "Protein Taf15" species:1... 119 1.5e-06 2
TAIR|locus:2012788 - symbol:AT1G10390 "AT1G10390" species... 146 1.8e-06 1
RGD|1309595 - symbol:Taf15 "TAF15 RNA polymerase II, TATA... 118 2.0e-06 2
UNIPROTKB|Q96QC0 - symbol:PPP1R10 "Serine/threonine-prote... 145 2.0e-06 1
UNIPROTKB|F1P555 - symbol:SFPQ "Uncharacterized protein" ... 143 2.0e-06 1
ZFIN|ZDB-GENE-030131-1600 - symbol:ewsr1b "Ewing sarcoma ... 147 2.3e-06 2
UNIPROTKB|P12105 - symbol:COL3A1 "Collagen alpha-1(III) c... 146 2.3e-06 1
ZFIN|ZDB-GENE-080204-113 - symbol:zgc:172323 "zgc:172323"... 144 2.3e-06 1
UNIPROTKB|G1RSL2 - symbol:COL4A4 "Uncharacterized protein... 147 2.5e-06 1
FB|FBgn0262126 - symbol:gho "ghost" species:7227 "Drosoph... 135 3.2e-06 2
UNIPROTKB|Q7YR38 - symbol:PPP1R10 "Serine/threonine-prote... 143 3.4e-06 1
UNIPROTKB|Q5TM61 - symbol:PPP1R10 "Serine/threonine-prote... 143 3.4e-06 1
UNIPROTKB|F1SKM1 - symbol:COL7A1 "Uncharacterized protein... 148 3.6e-06 1
MGI|MGI:1344412 - symbol:Ldb3 "LIM domain binding 3" spec... 141 3.9e-06 1
UNIPROTKB|O75112 - symbol:LDB3 "LIM domain-binding protei... 141 4.0e-06 1
UNIPROTKB|G7N928 - symbol:EGK_04858 "Putative uncharacter... 145 4.1e-06 1
UNIPROTKB|G7PK77 - symbol:EGM_04376 "Putative uncharacter... 145 4.1e-06 1
UNIPROTKB|P04258 - symbol:COL3A1 "Collagen alpha-1(III) c... 142 5.0e-06 1
UNIPROTKB|C9JGE3 - symbol:EWSR1 "Ewing sarcoma breakpoint... 127 5.0e-06 2
UNIPROTKB|G4N3H5 - symbol:MGG_04961 "Uncharacterized prot... 139 5.2e-06 1
UNIPROTKB|E2R2K8 - symbol:PPP1R10 "Uncharacterized protei... 141 5.5e-06 1
FB|FBgn0261885 - symbol:osa "osa" species:7227 "Drosophil... 153 6.2e-06 2
UNIPROTKB|F1MXS8 - symbol:COL3A1 "Collagen alpha-1(III) c... 142 7.4e-06 1
UNIPROTKB|F1LRJ1 - symbol:Col4a3 "Protein Col4a3" species... 142 8.6e-06 1
UNIPROTKB|J9P8F7 - symbol:COL5A1 "Uncharacterized protein... 141 9.0e-06 1
UNIPROTKB|E1C0T1 - symbol:TFG "Uncharacterized protein" s... 134 9.0e-06 1
UNIPROTKB|F1LLX1 - symbol:Col11a1 "Collagen alpha-1(XI) c... 142 9.3e-06 1
RGD|2372 - symbol:Col11a1 "collagen, type XI, alpha 1" sp... 142 9.3e-06 1
UNIPROTKB|P20909 - symbol:Col11a1 "Collagen alpha-1(XI) c... 142 9.3e-06 1
TAIR|locus:2077547 - symbol:AT3G07030 species:3702 "Arabi... 134 9.4e-06 1
TAIR|locus:2043530 - symbol:AT2G25970 "AT2G25970" species... 139 1.1e-05 2
UNIPROTKB|F1N7Q7 - symbol:COL4A2 "Collagen alpha-2(IV) ch... 141 1.1e-05 1
UNIPROTKB|F1PHX8 - symbol:COL5A1 "Uncharacterized protein... 141 1.2e-05 1
MGI|MGI:2157767 - symbol:Krtap21-1 "keratin associated pr... 111 1.3e-05 1
ZFIN|ZDB-GENE-030131-5726 - symbol:eif3s10 "eukaryotic tr... 139 1.3e-05 1
UNIPROTKB|F1N474 - symbol:COL4A5 "Uncharacterized protein... 140 1.4e-05 1
UNIPROTKB|F1RYI8 - symbol:COL3A1 "Uncharacterized protein... 139 1.6e-05 1
UNIPROTKB|K7EKB2 - symbol:TAF15 "TATA-binding protein-ass... 125 1.7e-05 1
WB|WBGene00000628 - symbol:col-51 species:6239 "Caenorhab... 132 1.8e-05 1
WB|WBGene00000251 - symbol:bli-1 species:6239 "Caenorhabd... 136 2.0e-05 1
UNIPROTKB|J9P0L0 - symbol:COL3A1 "Uncharacterized protein... 138 2.0e-05 1
UNIPROTKB|F1NI73 - symbol:COL3A1 "Collagen alpha-1(III) c... 137 2.2e-05 1
UNIPROTKB|F1RXW0 - symbol:COL5A2 "Uncharacterized protein... 137 2.2e-05 1
UNIPROTKB|Q28009 - symbol:FUS "RNA-binding protein FUS" s... 132 2.3e-05 1
UNIPROTKB|F1RFI8 - symbol:EWSR1 "Uncharacterized protein"... 121 2.5e-05 2
UNIPROTKB|E2RS29 - symbol:E2RS29 "Uncharacterized protein... 132 2.5e-05 1
UNIPROTKB|P0CG41 - symbol:CTAGE8 "Cutaneous T-cell lympho... 134 2.5e-05 1
ZFIN|ZDB-GENE-040426-1010 - symbol:fus "fusion (involved ... 132 2.5e-05 1
ZFIN|ZDB-GENE-070912-607 - symbol:col11a1b "collagen, typ... 138 2.5e-05 1
UNIPROTKB|F1N2Y2 - symbol:COL5A2 "Uncharacterized protein... 137 2.6e-05 1
UNIPROTKB|F1PG08 - symbol:COL5A2 "Uncharacterized protein... 137 2.6e-05 1
ZFIN|ZDB-GENE-050809-108 - symbol:pygo2 "pygopus homolog ... 132 2.7e-05 1
UNIPROTKB|J9P8I1 - symbol:CROCC "Uncharacterized protein"... 116 3.1e-05 2
UNIPROTKB|F1Q2C0 - symbol:CROCC "Uncharacterized protein"... 116 3.1e-05 2
UNIPROTKB|Q767K9 - symbol:PPP1R10 "Serine/threonine-prote... 134 3.1e-05 1
UNIPROTKB|F1S4P6 - symbol:EIF3A "Uncharacterized protein"... 101 3.3e-05 2
WB|WBGene00000677 - symbol:col-103 species:6239 "Caenorha... 128 3.7e-05 1
CGD|CAL0000919 - symbol:RPO21 species:5476 "Candida albic... 136 4.0e-05 1
UNIPROTKB|Q5ACI7 - symbol:RPO21 "DNA-directed RNA polymer... 136 4.0e-05 1
TAIR|locus:4010713902 - symbol:AT4G22505 species:3702 "Ar... 130 4.0e-05 1
MGI|MGI:88453 - symbol:Col3a1 "collagen, type III, alpha ... 135 4.2e-05 1
UNIPROTKB|F1PG69 - symbol:COL3A1 "Uncharacterized protein... 135 4.2e-05 1
UNIPROTKB|G5EF87 - symbol:swsn-1 "SWI3-like protein" spec... 131 5.4e-05 1
MGI|MGI:1925567 - symbol:Ccdc88b "coiled-coil domain cont... 134 5.5e-05 1
WARNING: Descriptions of 141 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2033681 [details] [associations]
symbol:AT1G67170 "AT1G67170" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] EMBL:CP002684 EMBL:BT005883
EMBL:AK228253 IPI:IPI00547288 RefSeq:NP_176888.2 UniGene:At.35681
ProteinModelPortal:Q84TD8 SMR:Q84TD8 IntAct:Q84TD8 PRIDE:Q84TD8
EnsemblPlants:AT1G67170.1 GeneID:843037 KEGG:ath:AT1G67170
TAIR:At1g67170 HOGENOM:HOG000005883 InParanoid:Q84TD8 OMA:MESKGRI
PhylomeDB:Q84TD8 ProtClustDB:CLSN2918424 Genevestigator:Q84TD8
Uniprot:Q84TD8
Length = 359
Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
Identities = 189/333 (56%), Positives = 229/333 (68%)
Query: 30 GMRPPMP--GAFPPFDMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQ 87
G PP G +P F+M+PPPEVMEQK +QH E+Q+LA ENQRL THG+LRQELAAAQ
Sbjct: 35 GAIPPSAAQGVYPSFNMLPPPEVMEQKFVAQHGELQRLAIENQRLGGTHGSLRQELAAAQ 94
Query: 88 HELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVARE 147
HE+Q+LH QIG MKSERE +M L EK+AKME EL+ +E VKLE Q+++ EA++LVVARE
Sbjct: 95 HEIQMLHAQIGSMKSEREQRMMGLAEKVAKMETELQKSEAVKLEMQQARAEARSLVVARE 154
Query: 148 ELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQV 207
EL++KVHQLTQ+LQ++ +DVQQIPAL+SELE+LRQEY CR TY+YEKKFYNDHLESLQ
Sbjct: 155 ELMSKVHQLTQELQKSRSDVQQIPALMSELENLRQEYQQCRATYDYEKKFYNDHLESLQA 214
Query: 208 MEKNYITMATEVEKLRAELMNAPNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYG 267
MEKNY+TMA EVEKL+A+LMN N DRRA G YG N+E + SG G YED +G
Sbjct: 215 MEKNYMTMAREVEKLQAQLMNNANSDRRAG-GPYGNNI-NAEIDASGHQSGNGYYEDAFG 272
Query: 268 VPQGHGPPPSATTAGVVGAGPNTSTSA----Y-AATQSGT-PMRAAYDIPRGPGYEASKG 321
PQG+ P P A A GPN+ A Y TQ G P R Y+ PRGP S
Sbjct: 273 -PQGYIPQPVAGNA----TGPNSVVGAAQYPYQGVTQPGYFPQRPGYNFPRGP--PGSYD 325
Query: 322 PGYDASKAPSYDP-TKGPSYD-PAKGPGYDPTK 352
P P P GPS + P G +P++
Sbjct: 326 PTTRLPTGPYGAPFPPGPSNNTPYAGTHGNPSR 358
>TAIR|locus:2089616 [details] [associations]
symbol:AT3G14750 "AT3G14750" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0048573 "photoperiodism, flowering" evidence=RCA]
EMBL:CP002686 EMBL:AY035083 EMBL:AY051034 IPI:IPI00544941
RefSeq:NP_566492.1 UniGene:At.20367 ProteinModelPortal:Q93V84
SMR:Q93V84 PaxDb:Q93V84 PRIDE:Q93V84 EnsemblPlants:AT3G14750.1
GeneID:820703 KEGG:ath:AT3G14750 TAIR:At3g14750 eggNOG:NOG236769
HOGENOM:HOG000242815 InParanoid:Q93V84 OMA:YAENYEH PhylomeDB:Q93V84
ProtClustDB:CLSN2688383 ArrayExpress:Q93V84 Genevestigator:Q93V84
Uniprot:Q93V84
Length = 331
Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
Identities = 96/252 (38%), Positives = 146/252 (57%)
Query: 45 MPPP-EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQ-ILHGQIGGMKS 102
+PP ++E ++A+Q+ ++Q L +NQRLAATH L+QEL AQHELQ I+H I +++
Sbjct: 63 LPPQFSILEDRLAAQNQDVQGLLADNQRLAATHVALKQELEVAQHELQRIMH-YIDSLRA 121
Query: 103 ERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR 162
E E+ MR + +K + E EL+ + ++ E QK + + + R+EL ++VH +TQDL R
Sbjct: 122 EEEIMMREMYDKSMRSEMELREVDAMRAEIQKIRADIKEFTSGRQELTSQVHLMTQDLAR 181
Query: 163 AHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKL 222
D+QQIP L +E+E+ +QE R +YEKK Y ++ E ++ME + MA E+EKL
Sbjct: 182 LTADLQQIPTLTAEIENTKQELQRARAAIDYEKKGYAENYEHGKIMEHKLVAMARELEKL 241
Query: 223 RAELMNAP-NVDRRAADGSYGGAT--GNSENETSGRPVGQNAYEDGYGV-PQ-----GHG 273
RAE+ N+ + G+ GG G N +G PV N Y+ Y + P G+
Sbjct: 242 RAEIANSETSAYANGPVGNPGGVAYGGGYGNPEAGYPV--NPYQPNYTMNPAQTGVVGYY 299
Query: 274 PPPSATTAGVVG 285
PPP A G
Sbjct: 300 PPPYGPQAAWAG 311
>TAIR|locus:2035751 [details] [associations]
symbol:AT1G55170 "AT1G55170" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC073944
EMBL:AY084916 EMBL:BT006117 EMBL:AK118721 IPI:IPI00529305
RefSeq:NP_564678.1 UniGene:At.37108 ProteinModelPortal:Q9C717
SMR:Q9C717 PaxDb:Q9C717 PRIDE:Q9C717 EnsemblPlants:AT1G55170.1
GeneID:841960 KEGG:ath:AT1G55170 TAIR:At1g55170 eggNOG:NOG306311
InParanoid:Q9C717 OMA:ELHRMNL PhylomeDB:Q9C717
ProtClustDB:CLSN2688822 ArrayExpress:Q9C717 Genevestigator:Q9C717
Uniprot:Q9C717
Length = 283
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 86/241 (35%), Positives = 130/241 (53%)
Query: 32 RPPMPGAFPPFDMMPPPEVMEQ------KIASQHVEMQKLATENQRLAATHGTLRQELAA 85
RP + G PP PPP ++E +I Q E+++L ++N LA L +EL A
Sbjct: 25 RPFLRG--PPLLQPPPPSLLEDLQIQEGEIRRQDAEIRRLLSDNHGLADDRMVLERELVA 82
Query: 86 AQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVA 145
A+ EL ++ I +++E++LQ+R +EK K+E +++ E K E + + E Q L
Sbjct: 83 AKEELHRMNLMISDLRAEQDLQLREFSEKRHKLEGDVRAMESYKKEASQLRGEVQKLDEI 142
Query: 146 REELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESL 205
+ EL V L +DL + +D +QIP + +E++ L++E H R EYEKK + +E
Sbjct: 143 KRELSGNVQLLRKDLAKLQSDNKQIPGMRAEVKDLQKELMHARDAIEYEKKEKFELMEQR 202
Query: 206 QVMEKNYITMATEVEKLRAELMNAPNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDG 265
Q MEKN ++MA EVEKLRAEL VD R +GG+ G + N G G D
Sbjct: 203 QTMEKNMVSMAREVEKLRAELAT---VDSRP--WGFGGSYGMNYNNMDGTFRGSYGENDT 257
Query: 266 Y 266
Y
Sbjct: 258 Y 258
>TAIR|locus:2156146 [details] [associations]
symbol:AT5G61920 "AT5G61920" species:3702 "Arabidopsis
thaliana" [GO:0008150 "biological_process" evidence=ND]
EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:AB022212
UniGene:At.55672 EMBL:DQ447104 IPI:IPI00520542
RefSeq:NP_001119474.1 RefSeq:NP_200998.1 PRIDE:Q9FH51
EnsemblPlants:AT5G61920.1 EnsemblPlants:AT5G61920.2 GeneID:836313
KEGG:ath:AT5G61920 TAIR:At5g61920 eggNOG:NOG265125
HOGENOM:HOG000090683 InParanoid:Q9FH51 OMA:KAHIRSI PhylomeDB:Q9FH51
ProtClustDB:CLSN2686951 Genevestigator:Q9FH51 Uniprot:Q9FH51
Length = 238
Score = 292 (107.8 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 64/183 (34%), Positives = 107/183 (58%)
Query: 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQM 108
+++E KIA Q E+ +L+ +N++LA+++ L+++L A E+Q L I +++ E+Q+
Sbjct: 51 DILENKIAVQAAEIDRLSNDNRKLASSYVALKEDLTVADREVQGLRAHIRKTETDHEIQI 110
Query: 109 RNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ 168
R+ EKIAKME +K E ++ E Q + EA L REEL +KV +DL++ + +
Sbjct: 111 RSTLEKIAKMEGMVKNRENIRREVQSAHIEAHRLAREREELASKVKLGMKDLKKVCLEAE 170
Query: 169 QIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 228
+ A ELE L++E+ R +E EK + L L+ ME+ I +EKLR+E+
Sbjct: 171 SLEASSQELERLKEEHQRLRKEFEEEKSGNVEKLAQLKGMERKIIGAVKAIEKLRSEIST 230
Query: 229 APN 231
A N
Sbjct: 231 ARN 233
>FB|FBgn0085362 [details] [associations]
symbol:Vml "Vitelline membrane-like" species:7227 "Drosophila
melanogaster" [GO:0009950 "dorsal/ventral axis specification"
evidence=IGI] [GO:0060388 "vitelline envelope" evidence=IDA]
[GO:0007305 "vitelline membrane formation involved in
chorion-containing eggshell formation" evidence=ISM] [GO:0008316
"structural constituent of vitelline membrane" evidence=ISM]
[GO:0035805 "egg coat" evidence=ISM] EMBL:AE014298 GO:GO:0009950
GeneTree:ENSGT00700000104744 PROSITE:PS51137 GO:GO:0060388
InterPro:IPR013135 RefSeq:NP_001096866.1 UniGene:Dm.32785
STRING:A8JUV4 EnsemblMetazoa:FBtr0112535 GeneID:5740271
KEGG:dme:Dmel_CG34333 UCSC:CG34333-RA CTD:5740271
FlyBase:FBgn0085362 eggNOG:NOG284187 InParanoid:A8JUV4 OMA:ISKYETI
OrthoDB:EOG4KPRTT GenomeRNAi:5740271 NextBio:20891311 Bgee:A8JUV4
Uniprot:A8JUV4
Length = 578
Score = 284 (105.0 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 84/284 (29%), Positives = 100/284 (35%)
Query: 229 APNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQG---HGPPPSATTAGVVG 285
AP+ AA SY S + S P Y P H P A++
Sbjct: 198 APSYSAPAAP-SYSAPAAPSYSAPSA-PSYSAQKTSSYSAPAAPSYHAPAAPASSYSAP- 254
Query: 286 AGPNTSTSA---YAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDP 342
AGP+ S A Y+A P ++Y + P Y A P Y A APSY + PSY
Sbjct: 255 AGPSYSAPAAPSYSAPSYSAPA-SSYSALKAPSYSAPAAPSYSAPAAPSYSSSASPSYSS 313
Query: 343 AKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGP 402
Y P Y A K +Y A P+Y PSY Y P+Y P
Sbjct: 314 PASSSYSAPAAPTYSAPKAQSYSAPAAPSYSAPAAPSYSAPASSSYSAPAAPSYSAPAAP 373
Query: 403 GYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDG 462
Y P Y Y A APSY P Y Y APSY +
Sbjct: 374 SYSAPAAPSYSAPASSSYSAPAAPSYSAPAAPSYSAPASSSYSAPAAPSYSAPAAPSYS- 432
Query: 463 APRGAAPHGQVPP-PLNNVPYGSATPPARS---GSGQPRGGNPA 502
AP AAP P P + P S AR+ GS P G A
Sbjct: 433 AP--AAPSYSAPAAPSYSAPASSGYSAARAYSAGSAAPASGYSA 474
Score = 274 (101.5 bits), Expect = 4.7e-21, P = 4.7e-21
Identities = 80/271 (29%), Positives = 97/271 (35%)
Query: 244 ATGNSENETSGRPVGQNAYEDGYG--VP-QGHGPP------PSATTAGVVG-AGPNTSTS 293
AT N E + G P + YE+ + +P Q + PP S + A G + P
Sbjct: 24 ATRNEEFD-DGFPESEFDYEERHTREIPAQAYAPPIVYNSQSSYSPAKDQGYSAPAAPVY 82
Query: 294 AYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKG 353
+ AA P +Y P P Y A P Y A APSY PSY Y
Sbjct: 83 SPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPASSSYSAPAA 142
Query: 354 PGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYD 413
P Y A +Y A P+Y SY Y P+Y P Y P Y
Sbjct: 143 PSYSAPAAPSYSAPAAPSYSAPASSSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYS 202
Query: 414 VQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYD-PSRGTGFDGAPRGAAPHGQ 472
P Y A APSY P Y Q+ Y APSY P+ AP G P
Sbjct: 203 APAAPSYSAPAAPSYSAPSAPSYSAQKTSSYSAPAAPSYHAPAAPASSYSAPAG--PSYS 260
Query: 473 VPP-PLNNVPYGSATPPARSGSGQPRGGNPA 502
P P + P SA + S P PA
Sbjct: 261 APAAPSYSAPSYSAPASSYSALKAPSYSAPA 291
Score = 262 (97.3 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 69/246 (28%), Positives = 83/246 (33%)
Query: 266 YGVPQGHGPPPSATTAGVVG-AGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGY 324
Y P + S + A G + P + AA P +Y P P Y A P Y
Sbjct: 54 YAPPIVYNSQSSYSPAKDQGYSAPAAPVYSPAAPSYSAPAAPSYSAPAAPSYSAPAAPSY 113
Query: 325 DASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQR 384
A APSY PSY Y P Y A +Y A P+Y SY
Sbjct: 114 SAPAAPSYSAPAAPSYSAPASSSYSAPAAPSYSAPAAPSYSAPAAPSYSAPASSSYSAPA 173
Query: 385 GLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGY 444
Y P+Y P Y P Y P Y A APSY P Y Q+ Y
Sbjct: 174 APSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPSAPSYSAQKTSSY 233
Query: 445 DMRRAPSYD-PSRGTGFDGAPRGAAPHGQVPP----PLNNVP---YGSATPPARSGSGQP 496
APSY P+ AP G + P P + P Y + P+ S P
Sbjct: 234 SAPAAPSYHAPAAPASSYSAPAGPSYSAPAAPSYSAPSYSAPASSYSALKAPSYSAPAAP 293
Query: 497 RGGNPA 502
PA
Sbjct: 294 SYSAPA 299
Score = 259 (96.2 bits), Expect = 2.4e-19, P = 2.4e-19
Identities = 66/241 (27%), Positives = 84/241 (34%)
Query: 266 YGVPQG--HGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPG 323
Y P G + P + + + + P +S SA A P +Y P P Y +S P
Sbjct: 251 YSAPAGPSYSAPAAPSYSAPSYSAPASSYSALKAPSYSAPAAPSYSAPAAPSYSSSASPS 310
Query: 324 YD--------ASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIH 375
Y A AP+Y K SY P Y P Y A S+Y A P+Y
Sbjct: 311 YSSPASSSYSAPAAPTYSAPKAQSYSAPAAPSYSAPAAPSYSAPASSSYSAPAAPSYSAP 370
Query: 376 RGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPG 435
PSY Y +Y P Y P Y Y A APSY P
Sbjct: 371 AAPSYSAPAAPSYSAPASSSYSAPAAPSYSAPAAPSYSAPASSSYSAPAAPSYSAPAAPS 430
Query: 436 YDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQ 495
Y Y APSY +G+ A R + P + P S+ A + SG
Sbjct: 431 YSAPAAPSYSAPAAPSYSAPASSGYSAA-RAYSAGSAAPASGYSAPKTSSGYSAPASSGS 489
Query: 496 P 496
P
Sbjct: 490 P 490
Score = 252 (93.8 bits), Expect = 1.5e-18, P = 1.5e-18
Identities = 74/278 (26%), Positives = 92/278 (33%)
Query: 229 APNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGP 288
AP+ AA SY S + + A Y P T++ A P
Sbjct: 182 APSYSAPAAP-SYSAPAAPSYSAPAAPSYSAPA-APSYSAPSAPSYSAQKTSSYSAPAAP 239
Query: 289 NTSTSAYAATQSGTPMRAAYDIPRGPGYEASK--GPG--YDASKAPSYDPTKGPSYDPAK 344
+ A A+ P +Y P P Y A P Y A KAPSY PSY
Sbjct: 240 SYHAPAAPASSYSAPAGPSYSAPAAPSYSAPSYSAPASSYSALKAPSYSAPAAPSYSAPA 299
Query: 345 GPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGY 404
P Y + P Y + S+Y A P Y + SY Y P+Y Y
Sbjct: 300 APSYSSSASPSYSSPASSSYSAPAAPTYSAPKAQSYSAPAAPSYSAPAAPSYSAPASSSY 359
Query: 405 ETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAP 464
P Y P Y A APSY Y Y APSY + + AP
Sbjct: 360 SAPAAPSYSAPAAPSYSAPAAPSYSAPASSSYSAPAAPSYSAPAAPSYSAPASSSYS-AP 418
Query: 465 RGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRGGNPA 502
AAP P + Y + P+ S P PA
Sbjct: 419 --AAPSYSAPAAPS---YSAPAAPSYSAPAAPSYSAPA 451
Score = 218 (81.8 bits), Expect = 9.3e-15, P = 9.3e-15
Identities = 81/279 (29%), Positives = 95/279 (34%)
Query: 227 MNAPNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGA 286
+ AP+ AA SY S + +S P + Y P P SA A A
Sbjct: 282 LKAPSYSAPAAP-SYSAPAAPSYS-SSASPSYSSPASSSYSAPAA--PTYSAPKAQSYSA 337
Query: 287 GPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGP 346
S SA AA P ++Y P P Y A P Y A APSY SY P
Sbjct: 338 PAAPSYSAPAAPSYSAPASSSYSAPAAPSYSAPAAPSYSAPAAPSYSAPASSSYSAPAAP 397
Query: 347 GYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYET 406
Y P Y A S+Y A P+Y PSY Y P+Y GY
Sbjct: 398 SYSAPAAPSYSAPASSSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPASSGYSA 457
Query: 407 QRVPGYDVQRGPVYEAQRAPSY-IPQRGPGYDLQRGQGYDMRRAPSYD-PSRGTGFDG-- 462
R Y G A A Y P+ GY G A SY P+ T G
Sbjct: 458 ARA--YSA--G---SAAPASGYSAPKTSSGYSAPASSGSPA--ASSYSAPASSTASSGYS 508
Query: 463 AP--------RGAAPHGQVPPPLNNVPYGSATPPARSGS 493
AP R H + YGSA P A G+
Sbjct: 509 APASKSSGYARSEMDHQILGMARTAGGYGSAAPSAAYGA 547
>TAIR|locus:2060848 [details] [associations]
symbol:AT2G30120 species:3702 "Arabidopsis thaliana"
[GO:0009507 "chloroplast" evidence=ISM] EMBL:CP002685
IPI:IPI00938894 RefSeq:NP_001154541.1 UniGene:At.19562
EnsemblPlants:AT2G30120.2 GeneID:817564 KEGG:ath:AT2G30120
OMA:PEANGTH Uniprot:F4IMQ0
Length = 288
Score = 221 (82.9 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 65/235 (27%), Positives = 114/235 (48%)
Query: 50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMR 109
++E +IA QH E+Q L +NQRLA H L+ +L A+ EL+ L +K+E E ++R
Sbjct: 38 ILEDRIAIQHREIQSLLNDNQRLAVAHIGLKDQLNVAKRELERLLETAVKVKAEGEAKVR 97
Query: 110 NLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQ 169
+ + +MEAE + + + E + +++ Q L R+EL ++ ++ +A + +
Sbjct: 98 EVYQNALRMEAEARVIDGLGAELGQVRSDVQRLGSDRQELATELAMFDDEMAKAKPNSDR 157
Query: 170 IPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 229
+ E+E LR E R E EKK +L + MEK + E+ KL EL++
Sbjct: 158 AIEVKLEIEILRGEIRKGRAALELEKKTRASNLHHERGMEKTIDHLNREIVKLEEELVD- 216
Query: 230 PNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVV 284
++ +A + + + + G N +D YG QG P + T +V
Sbjct: 217 --LETKAREANAAAEAAPTPSPGLAASYGNNT-DDIYG-GQGRQYPEANGTHELV 267
>UNIPROTKB|A2VD00 [details] [associations]
symbol:eif3a "Eukaryotic translation initiation factor 3
subunit A" species:8355 "Xenopus laevis" [GO:0001732 "formation of
translation initiation complex" evidence=ISS] [GO:0005852
"eukaryotic translation initiation factor 3 complex" evidence=ISS]
[GO:0003743 "translation initiation factor activity" evidence=ISS]
InterPro:IPR000717 Pfam:PF01399 SMART:SM00088 GO:GO:0003743
GO:GO:0005852 KO:K03254 HAMAP:MF_03000 HOVERGEN:HBG006128
GO:GO:0001732 EMBL:BC129055 RefSeq:NP_001085285.1 UniGene:Xl.57279
PRIDE:A2VD00 GeneID:443632 KEGG:xla:443632 Uniprot:A2VD00
Length = 1424
Score = 195 (73.7 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 119/453 (26%), Positives = 178/453 (39%)
Query: 50 VMEQKIASQHVEMQKLATENQRLAATHGT-LRQELAAAQHELQILHGQIGGMKSER--EL 106
V K + Q V KL +RLA L + + E +I + + + +R E
Sbjct: 761 VSNLKASRQSVYDAKLKQFQERLAEEKRVRLEERKRQRKEERRISYYRDKEEEEQRLIEE 820
Query: 107 QMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTD 166
Q++ E K+E E + AE + + + K E Q EL + + +D +R D
Sbjct: 821 QLKQEREDREKIENEKREAEQREYQERLKKLEEQERKKRLRELEIEEREKKRDEERRGPD 880
Query: 167 ----VQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKL 222
Q P+ + R+E RG E+K + + + + E
Sbjct: 881 DSFRKQDTPSRWGD----REESGWRRGADPDERKQAPPERDWRSGGQDSKPVKDEDREGD 936
Query: 223 RAELMNAPNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAG 282
++ DG A S T R ++ EDG G +G P
Sbjct: 937 EDSVLRKDEEQVARGDGDEERAA--SWRGTDDRGPKRSVEEDG-GPRRGFNDEPGPRRGF 993
Query: 283 VVGAGPNTSTSAYAATQSGTPMRAAYDIPRGP--GYEASKGP--GYDASKAP--SYDPTK 336
GP + P R D RGP G + +GP G D + P D +
Sbjct: 994 EDDQGPRRGLD-----EDRGPRRGL-DEDRGPRRGLDEDRGPRRGLDEDRGPRRGLDEDR 1047
Query: 337 GP--SYDPAKGP--GYDPTKGP--GYDAQKGSN--YDAQRGP--NYDIHRGPSYDPQRGL 386
GP D +GP G D +GP G+D +G +D RGP ++D RGP +RG
Sbjct: 1048 GPRRGLDEDRGPRRGLDEDRGPRRGFDEDRGPRRGFDEDRGPRRDFDEDRGP----RRG- 1102
Query: 387 GYDMQRGPN--YDMQRGP--GYETQRVP--GYDVQRGPV--YEAQRAP--SYIPQRGP-- 434
+D RGP +D RGP G++ R P G+D RGP ++ R P + RGP
Sbjct: 1103 -FDEDRGPRRGFDEDRGPRRGFDEDRGPRRGFDDDRGPRRGFDDDRGPRRGFEDDRGPRR 1161
Query: 435 GYDLQRG--QGYDMRRAPSYDPSRGTGFDGAPR 465
G++ RG +G++ R P RG D PR
Sbjct: 1162 GFEDDRGPRRGFEDDRGPR----RGFDEDRTPR 1190
Score = 184 (69.8 bits), Expect = 9.1e-15, Sum P(2) = 9.1e-15
Identities = 66/197 (33%), Positives = 90/197 (45%)
Query: 305 RAAYDIPRGP--GYEASKGP--GYDASKAP--SYDPTKGP--SYDPAKGP--GYDPTKGP 354
R D RGP G + +GP G D + P D +GP +D +GP G+D +GP
Sbjct: 1030 RRGLDEDRGPRRGLDEDRGPRRGLDEDRGPRRGLDEDRGPRRGFDEDRGPRRGFDEDRGP 1089
Query: 355 GYDAQKGSNYDAQRGPN--YDIHRGP--SYDPQRG--LGYDMQRGPN--YDMQRGP--GY 404
D +D RGP +D RGP +D RG G+D RGP +D RGP G+
Sbjct: 1090 RRD------FDEDRGPRRGFDEDRGPRRGFDEDRGPRRGFDEDRGPRRGFDDDRGPRRGF 1143
Query: 405 ETQRVP--GYDVQRGPV--YEAQRAP--SYIPQRGP--GYDLQRG--QGYDMRRAP--SY 452
+ R P G++ RGP +E R P + RGP G+D R +G++ R P
Sbjct: 1144 DDDRGPRRGFEDDRGPRRGFEDDRGPRRGFEDDRGPRRGFDEDRTPRRGFEDDRGPRRGM 1203
Query: 453 DPSRGTGFDGAPRGAAP 469
D R + GA P
Sbjct: 1204 DEERVSWRGGAEEDRGP 1220
Score = 159 (61.0 bits), Expect = 4.9e-12, Sum P(2) = 4.9e-12
Identities = 61/197 (30%), Positives = 91/197 (46%)
Query: 305 RAAYDIPRGP--GYEASKGP--GYDASKAP--SYDPTKGP--SYDPAKGP--GYDPTKGP 354
R +D RGP ++ +GP G+D + P +D +GP +D +GP G+D +GP
Sbjct: 1080 RRGFDEDRGPRRDFDEDRGPRRGFDEDRGPRRGFDEDRGPRRGFDEDRGPRRGFDDDRGP 1139
Query: 355 GYDAQKGSNYDAQRGPN--YDIHRGPSYDPQRGLGYDMQRGPN--YDMQRGP--GYETQR 408
++G +D RGP ++ RGP +RG ++ RGP ++ RGP G++ R
Sbjct: 1140 ----RRG--FDDDRGPRRGFEDDRGP----RRG--FEDDRGPRRGFEDDRGPRRGFDEDR 1187
Query: 409 VP--GYDVQRGPV--YEAQRAP---SYIPQRGPGYDLQRGQGYDMRRAPSYD--PSRGTG 459
P G++ RGP + +R RGP + +G RR D P RG
Sbjct: 1188 TPRRGFEDDRGPRRGMDEERVSWRGGAEEDRGPRRGAEEDRG--PRRGAEEDRGPRRGAE 1245
Query: 460 FDGAPRGAAPH--GQVP 474
D PR A GQ P
Sbjct: 1246 EDRGPRRGAEEDRGQTP 1262
Score = 91 (37.1 bits), Expect = 9.1e-15, Sum P(2) = 9.1e-15
Identities = 42/178 (23%), Positives = 84/178 (47%)
Query: 53 QKIASQHVEMQ--KLATENQRLAAT--HGTLRQELAAAQHELQILHGQIGGMKSERELQM 108
Q + S+H+ Q ++T + AT + QE QH++ I Q K + +
Sbjct: 512 QNMPSEHIRNQLTAMSTVLSKAVATIKPAHVLQE-KEEQHQIAISAYQKNSRKEHQRILT 570
Query: 109 RNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ 168
R T + K E + K E ++ + E Q + A EE + + + ++ +R + +
Sbjct: 571 RRQTIEERKERLENLNIQREKEEHEQREAELQKVRKAEEERLRQEAK-EREKERILQEHE 629
Query: 169 QIPALLSELESLRQEYHHCRGTYEYEKKFYND-HLESLQVMEKNYITMATEVEKLRAE 225
QI + +++R+ + T E+ K + D +E+L+ ++ ++I MA +VE+L E
Sbjct: 630 QI-----KKKTVRERLEQIKKT-EFGAKAFKDIDIENLEELDPDFI-MAKQVEQLEKE 680
Score = 54 (24.1 bits), Expect = 6.2e-11, Sum P(2) = 6.2e-11
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 162 RAHTDVQQI--PALLSELE---SLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMA 216
+ H Q+I P +L LE LR+ + G Y+Y+ +++SL+ + + Y+ +A
Sbjct: 38 KKHRTWQKIHEPIMLKYLELCVDLRKSHLAKEGLYQYKNICQQVNIKSLEDVVRAYLKLA 97
Query: 217 TE 218
E
Sbjct: 98 EE 99
>UNIPROTKB|A4II09 [details] [associations]
symbol:eif3a "Eukaryotic translation initiation factor 3
subunit A" species:8364 "Xenopus (Silurana) tropicalis" [GO:0001732
"formation of translation initiation complex" evidence=ISS]
[GO:0005852 "eukaryotic translation initiation factor 3 complex"
evidence=ISS] [GO:0003743 "translation initiation factor activity"
evidence=ISS] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
GO:GO:0003743 GO:GO:0005852 eggNOG:NOG236708 HOGENOM:HOG000246822
KO:K03254 HAMAP:MF_03000 HOVERGEN:HBG006128 GO:GO:0001732 CTD:8661
EMBL:BC135790 RefSeq:NP_001096173.1 UniGene:Str.55518 STRING:A4II09
PRIDE:A4II09 GeneID:100124719 KEGG:xtr:100124719
Xenbase:XB-GENE-994394 Uniprot:A4II09
Length = 1391
Score = 186 (70.5 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 68/224 (30%), Positives = 101/224 (45%)
Query: 267 GVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGP--GYEASKGP-- 322
G+ + GP AG G + R +D RGP G++ +GP
Sbjct: 981 GLEEDRGPRRGIDDAGP-RRGFEEDRGPRRGIEDDRAPRRGFDDDRGPRRGFDDDRGPRR 1039
Query: 323 GYDASKAP--SYDPTKGP--SYDPAKGP--GYDPTKGP--GYDAQKGSN--YDAQRGPN- 371
G+D + P D +GP +D + P G+D +GP G+D +G +D RGP
Sbjct: 1040 GFDEDRGPRRGIDDDRGPRRGFDEDRTPRRGFDDDRGPRRGFDDDRGPRRGFDEDRGPRR 1099
Query: 372 -YDIHRGP--SYDPQRG--LGYDMQRGPN--YDMQRGP--GYETQRVP--GYDVQRGPVY 420
++ RGP ++ RG G++ RGP ++ RGP G+E R P G+D RGP
Sbjct: 1100 GFEDDRGPRRGFEDDRGPRRGFEDDRGPRRGFEDDRGPRRGFEDDRGPRRGFDEDRGP-- 1157
Query: 421 EAQRAPSYIPQRGP--GYDLQRG--QGYDMRRAP--SYDPSRGT 458
+R + RGP G+D R +G+D R P D RG+
Sbjct: 1158 --RRG--FEDDRGPRRGFDEDRTPRRGFDDDRGPRRGLDEDRGS 1197
Score = 183 (69.5 bits), Expect = 2.9e-14, Sum P(2) = 2.9e-14
Identities = 65/191 (34%), Positives = 92/191 (48%)
Query: 305 RAAYDIPRGP--GYEASKGP--GYDASKAP--SYDPTKGP--SYDPAKGP--GYDPTKGP 354
R ++ RGP G E + P G+D + P +D +GP +D +GP G D +GP
Sbjct: 998 RRGFEEDRGPRRGIEDDRAPRRGFDDDRGPRRGFDDDRGPRRGFDEDRGPRRGIDDDRGP 1057
Query: 355 GYDAQKGSNYDAQRGPN--YDIHRGP--SYDPQRG--LGYDMQRGPN--YDMQRGP--GY 404
++G +D R P +D RGP +D RG G+D RGP ++ RGP G+
Sbjct: 1058 ----RRG--FDEDRTPRRGFDDDRGPRRGFDDDRGPRRGFDEDRGPRRGFEDDRGPRRGF 1111
Query: 405 ETQRVP--GYDVQRGPV--YEAQRAP--SYIPQRGP--GYDLQRG--QGYDMRRAPSYDP 454
E R P G++ RGP +E R P + RGP G+D RG +G++ R P
Sbjct: 1112 EDDRGPRRGFEDDRGPRRGFEDDRGPRRGFEDDRGPRRGFDEDRGPRRGFEDDRGPR--- 1168
Query: 455 SRGTGFDGAPR 465
RG D PR
Sbjct: 1169 -RGFDEDRTPR 1178
Score = 167 (63.8 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 71/225 (31%), Positives = 103/225 (45%)
Query: 311 PRGPGYEASKGP--GYDASKAP--SYDPTKGP--SYDPAKGP--GYDPTKGP--GYDAQK 360
PR G++ + P G+D + P +D +GP +D +GP G++ +GP G++ +
Sbjct: 1057 PRR-GFDEDRTPRRGFDDDRGPRRGFDDDRGPRRGFDEDRGPRRGFEDDRGPRRGFEDDR 1115
Query: 361 GSN--YDAQRGPN--YDIHRGP--SYDPQRG--LGYDMQRGPN--YDMQRGP--GYETQR 408
G ++ RGP ++ RGP ++ RG G+D RGP ++ RGP G++ R
Sbjct: 1116 GPRRGFEDDRGPRRGFEDDRGPRRGFEDDRGPRRGFDEDRGPRRGFEDDRGPRRGFDEDR 1175
Query: 409 VP--GYDVQRGPV--YEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAP 464
P G+D RGP + R S+ RG G D+ R +G D R P RG D P
Sbjct: 1176 TPRRGFDDDRGPRRGLDEDRG-SW---RG-GDDVPR-RGADDDRGPR----RGADDDRGP 1225
Query: 465 RGAAPHGQVP--PPLNNVPYG-SATPPARSGS-GQPRGGN-PARR 504
R Q P P + P G AR S G PR P R
Sbjct: 1226 RRGEDRDQTPWKPMAASRPGGWREREKAREDSWGPPRDSQAPEER 1270
Score = 165 (63.1 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 105/441 (23%), Positives = 176/441 (39%)
Query: 58 QHVEMQKLATENQRLAATH-GTLRQELAAA----QHELQILH-GQIGGMKSERELQMRNL 111
+ + + K A E QR+ L++E + + E + H ++ M ++EL + L
Sbjct: 705 EEIPLLKKAYEEQRINDMELWELQEEERISTLLLEREKAVEHKNRMSRMVEDKELFVSKL 764
Query: 112 -TEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI 170
+ + EA+LK + E + ++ E + E + ++ +R + Q+
Sbjct: 765 KASRQSLYEAKLKQFQERLAEEKAARLEERKRERKEERRVNYYRDKEEEEERLREE--QL 822
Query: 171 PALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP 230
E E + E E E++ Y + L+ L+ E+ E+E E
Sbjct: 823 KQEREEQEKVENEKR------EAEQRDYQERLKKLEEQERKKRQRELEIE----ERERKR 872
Query: 231 NVDRRAADGSYGGATGN-SENETSGRPVGQNAYEDGYGVPQG---HGPPPSATTAGVVGA 286
+RR D ++ + E E SG G + E P+ G P S +
Sbjct: 873 EEERRGGDDTFRKDSSRWGEREESGWRRGADPDERKQVPPERDWRRGGPDSKPVINEDAS 932
Query: 287 G-PNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGY-DASKAPS--YDPTKGP--SY 340
+A + RA + P + KG + D + P + +GP
Sbjct: 933 NREEDENAALRKDEEQVSSRAFEEKVSLPDADEEKGGSWRDEDRGPKRGLEEDRGPRRGI 992
Query: 341 DPAKGP--GYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGP--SYDPQRG--LGYDMQRGP 394
D A GP G++ +GP ++G D +D RGP +D RG G+D RGP
Sbjct: 993 DDA-GPRRGFEEDRGP----RRGIEDDRAPRRGFDDDRGPRRGFDDDRGPRRGFDEDRGP 1047
Query: 395 N--YDMQRGP--GYETQRVP--GYDVQRGPVYEAQRAPSYIPQRGP--GYDLQRG--QGY 444
D RGP G++ R P G+D RGP +R + RGP G+D RG +G+
Sbjct: 1048 RRGIDDDRGPRRGFDEDRTPRRGFDDDRGP----RRG--FDDDRGPRRGFDEDRGPRRGF 1101
Query: 445 DMRRAP--SYDPSRGT--GFD 461
+ R P ++ RG GF+
Sbjct: 1102 EDDRGPRRGFEDDRGPRRGFE 1122
Score = 87 (35.7 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 40/187 (21%), Positives = 81/187 (43%)
Query: 39 FPPFDMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG 98
F PF P E + ++ + + K + H +E QH++ I Q
Sbjct: 507 FGPFLQNMPSEQIRNQLTAMSCVLSKAVGA---IKPAHVLQEKE---EQHQIAITAYQKN 560
Query: 99 GMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQ 158
K + + R T + K E + K E ++ + E Q + A EE + + + +
Sbjct: 561 SRKEHQRILARRQTIEERKERLENLNIQREKEEMEQKEAELQKVRKAEEERLRQEAK-ER 619
Query: 159 DLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATE 218
+ +R + +QI + +++R+ + T K F + +E+L+ ++ ++I MA +
Sbjct: 620 EKERILQEHEQI-----KKKTVRERLEQIKKTELGAKAFKDIDIENLEELDPDFI-MAKQ 673
Query: 219 VEKLRAE 225
VE+L E
Sbjct: 674 VEQLEKE 680
Score = 54 (24.1 bits), Expect = 3.5e-11, Sum P(2) = 3.5e-11
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 162 RAHTDVQQI--PALLSELE---SLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMA 216
+ H Q+I P +L LE LR+ + G Y+Y+ +++SL+ + + Y+ +A
Sbjct: 38 KKHRTWQKIHEPIMLKYLELCVDLRKSHLAKEGLYQYKNICQQVNIKSLEDVVRAYLKLA 97
Query: 217 TE 218
E
Sbjct: 98 EE 99
Score = 51 (23.0 bits), Expect = 7.2e-11, Sum P(2) = 7.2e-11
Identities = 27/120 (22%), Positives = 51/120 (42%)
Query: 50 VMEQKIASQHVEMQKLATENQRLAATHGT-LRQELAAAQHELQILHGQIGGMKSER--EL 106
V + K + Q + KL +RLA L + + E ++ + + + ER E
Sbjct: 761 VSKLKASRQSLYEAKLKQFQERLAEEKAARLEERKRERKEERRVNYYRDKEEEEERLREE 820
Query: 107 QMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTD 166
Q++ E+ K+E E + AE + + K E Q + EL + + ++ +R D
Sbjct: 821 QLKQEREEQEKVENEKREAEQRDYQERLKKLEEQERKKRQRELEIEERERKREEERRGGD 880
>UNIPROTKB|F1S187 [details] [associations]
symbol:LOC100518332 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001876 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00641
PROSITE:PS01358 PROSITE:PS50102 PROSITE:PS50199 SMART:SM00360
SMART:SM00547 GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005622 GeneTree:ENSGT00530000063105
EMBL:CU896616 Ensembl:ENSSSCT00000019273 OMA:TESSSGX Uniprot:F1S187
Length = 406
Score = 204 (76.9 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 71/225 (31%), Positives = 86/225 (38%)
Query: 228 NAPNV-DRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGA 286
N P D R + G + G E GR G+ GYG + G + G G
Sbjct: 183 NEPRPEDSRPSGGDFRGRGYGGERGYRGRG-GRGGDRGGYGGDRSGGGYGGDRSGGG-GY 240
Query: 287 GPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGP 346
G + S Y +SG Y RG GY +G GY + Y + Y +G
Sbjct: 241 GGDRSGGGYGGDRSG----GGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRSGGYGGDRGG 296
Query: 347 GYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQR-GPNY--DMQRGPG 403
GY +G GY +G Y RG Y RG Y RG GY R G Y D G G
Sbjct: 297 GYGGDRGGGYGGDRGGGYGGDRGGGYGGDRG-GYGGDRG-GYGGDRSGGGYGGDRGSGSG 354
Query: 404 YETQRVPGYDVQR-GPVYEAQRAPSYIPQRGPGYDLQRGQGYDMR 447
Y R GY R G Y R+ Y RG GY + G D R
Sbjct: 355 YGGDRSGGYGGDRSGGGYGGDRSGGYGGDRG-GYGGKMGGRNDYR 398
Score = 170 (64.9 bits), Expect = 9.5e-10, P = 9.5e-10
Identities = 57/163 (34%), Positives = 65/163 (39%)
Query: 312 RGPGYEASK-GPGY--DASKAPSYDPTK-GPSYDPAK-GPGYDPTKGPGYDAQKGSNYDA 366
RG GY + G GY D S Y + G Y + G GY +G GY +G Y
Sbjct: 218 RG-GYGGDRSGGGYGGDRSGGGGYGGDRSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGG 276
Query: 367 QRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAP 426
RG Y R Y RG GY RG Y RG GY R GY RG Y R
Sbjct: 277 DRGGGYGGDRSGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGG-YGGDRGG 335
Query: 427 SYIPQRGPGY--DLQRGQGYDMRRAPSYDPSR-GTGFDGAPRG 466
+ G GY D G GY R+ Y R G G+ G G
Sbjct: 336 YGGDRSGGGYGGDRGSGSGYGGDRSGGYGGDRSGGGYGGDRSG 378
Score = 141 (54.7 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 50/137 (36%), Positives = 55/137 (40%)
Query: 338 PSYDPAKGPGYDPTKG-PGYDAQKGSN--YDAQR-GPNY--DIHRGPSYDPQR-GLGYDM 390
PS +G GY +G G + G Y R G Y D G Y R G GY
Sbjct: 192 PSGGDFRGRGYGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSGGGGYGGDRSGGGYGG 251
Query: 391 QR-GPNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRA 449
R G Y RG GY R GY RG Y R+ Y RG GY RG GY R
Sbjct: 252 DRSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRSGGYGGDRGGGYGGDRGGGYGGDRG 311
Query: 450 PSYDPSRGTGFDGAPRG 466
Y RG G+ G RG
Sbjct: 312 GGYGGDRGGGY-GGDRG 327
>UNIPROTKB|P11414 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase II subunit RPB1"
species:10029 "Cricetulus griseus" [GO:0005634 "nucleus"
evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=ISS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0006468 "protein
phosphorylation" evidence=ISS] [GO:0004672 "protein kinase
activity" evidence=ISS] InterPro:IPR000684 Pfam:PF05001
PROSITE:PS00115 GO:GO:0003677 GO:GO:0006468 GO:GO:0006366
GO:GO:0003899 GO:GO:0005665 EMBL:M19538 PIR:A27677
ProteinModelPortal:P11414 Uniprot:P11414
Length = 467
Score = 173 (66.0 bits), Expect = 6.0e-10, P = 6.0e-10
Identities = 69/236 (29%), Positives = 93/236 (39%)
Query: 228 NAPNVDRRAADGSYGGATG---NSENETSGRPVGQN-AYEDGYGVPQGHGP--PPSATTA 281
N P + G GA G ++ ++ SG G + A+ G P GP P +
Sbjct: 24 NIPGLGAAGRSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPG 83
Query: 282 GVVGAGPNTSTSAYAATQSG--TPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPS 339
G + + ++ AY G TP +Y P P Y + P Y + +P+Y PT PS
Sbjct: 84 GAMSPSYSPTSPAYEPRSPGGYTPQSPSYS-PTSPSYSPTS-PSYSPT-SPNYSPTS-PS 139
Query: 340 YDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQ 399
Y P P Y PT P Y S Y + P+Y PSY P Y P+Y
Sbjct: 140 YSPTS-PSYSPTS-PSYSPTSPS-Y-SPTSPSYS-PTSPSYSPTSP-SYS-PTSPSYS-P 191
Query: 400 RGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPS 455
P Y P Y P Y + +PSY P P Y Y +PSY P+
Sbjct: 192 TSPSYSPTS-PSYS-PTSPSY-SPTSPSYSPT-SPSYS-PTSPSYSPT-SPSYSPT 241
Score = 132 (51.5 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 62/205 (30%), Positives = 79/205 (38%)
Query: 296 AATQSG-TPMRAAYDIPRGPGYEASKGPGYDA--SKAPSYDPTKGPS--YDPAKG----P 346
AA +SG TP A + P + PGY S P + GPS Y P+ G P
Sbjct: 30 AAGRSGMTPGAAGFS-PSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSP 88
Query: 347 GYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYET 406
Y PT P Y+ + Y Q P+Y PSY P Y PNY P Y
Sbjct: 89 SYSPTS-PAYEPRSPGGYTPQ-SPSYS-PTSPSYSPTSP-SYS-PTSPNYS-PTSPSYSP 142
Query: 407 QRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRG 466
P Y P Y + +PSY P P Y Y +PSY P+ + +P
Sbjct: 143 TS-PSYS-PTSPSY-SPTSPSYSPT-SPSYS-PTSPSYSPT-SPSYSPTSPSYSPTSP-S 195
Query: 467 AAPHGQVPPPLNNVPYGSATPPARS 491
+P P + P S T P+ S
Sbjct: 196 YSPTSPSYSPTS--PSYSPTSPSYS 218
Score = 131 (51.2 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 61/215 (28%), Positives = 80/215 (37%)
Query: 277 SATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTK 336
S T G G P+ ++ A + +P A P PG PG + PS
Sbjct: 34 SGMTPGAAGFSPSAASDASGFSPGYSP--AWSPTPGSPG-----SPGPSSPYIPSPGGAM 86
Query: 337 GPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNY 396
PSY P P Y+P GY Q S Y + P+Y PSY P Y P+Y
Sbjct: 87 SPSYSPTS-PAYEPRSPGGYTPQSPS-Y-SPTSPSYS-PTSPSYSPTSP-NYS-PTSPSY 140
Query: 397 DMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSR 456
P Y P Y P Y + +PSY P P Y Y +PSY P+
Sbjct: 141 S-PTSPSYSPTS-PSYS-PTSPSY-SPTSPSYSPT-SPSYS-PTSPSYSPT-SPSYSPTS 193
Query: 457 GTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARS 491
+ +P +P P + P S T P+ S
Sbjct: 194 PSYSPTSP-SYSPTSPSYSPTS--PSYSPTSPSYS 225
Score = 121 (47.7 bits), Expect = 0.00032, P = 0.00032
Identities = 63/225 (28%), Positives = 80/225 (35%)
Query: 274 PPPSATTAGVVGAGPNTSTSAYAATQSG-TPMRAAYDIPRGPGYEASKGPGYDAS----- 327
P S T+ PN Y T +P +Y P P Y + P Y S
Sbjct: 257 PSYSPTSPSYSPTSPN-----YTPTSPNYSPTSPSYS-PTSPSYSPTS-PSYSPSSPRYT 309
Query: 328 -KAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGL 386
++P+Y P+ PSY P+ P Y PT P Y S Y P Y P Y P
Sbjct: 310 PQSPTYTPSS-PSYSPSS-PSYSPTS-PKYTPTSPS-YSPS-SPEYT-PTSPKYSPTSPK 363
Query: 387 GYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDM 446
Y P Y P Y + P Y P Y + +P Y P P Y Y
Sbjct: 364 -YS-PTSPKYS-PTSPTY-SPTTPKYS-PTSPTY-SPTSPVYTPT-SPKYS-PTSPTYSP 415
Query: 447 RRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARS 491
+P Y P+ T +P+G+ P P S T PA S
Sbjct: 416 T-SPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAIS 459
>SGD|S000002299 [details] [associations]
symbol:RPO21 "RNA polymerase II largest subunit B220"
species:4932 "Saccharomyces cerevisiae" [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA;IMP] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA;IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003968 "RNA-directed
RNA polymerase activity" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 SGD:S000002299 GO:GO:0005739
GO:GO:0046872 GO:GO:0003677 EMBL:BK006938 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:X96876 EMBL:U27182
GO:GO:0003899 PDB:4GWQ PDBsum:4GWQ PDB:2LO6 PDBsum:2LO6
eggNOG:COG0086 GO:GO:0005665 PDB:1I3Q PDB:1I50 PDB:1I6H PDB:1K83
PDB:1NIK PDB:1NT9 PDB:1PQV PDB:1R5U PDB:1R9S PDB:1R9T PDB:1SFO
PDB:1TWA PDB:1TWC PDB:1TWF PDB:1TWG PDB:1TWH PDB:1WCM PDB:1Y1V
PDB:1Y1W PDB:1Y1Y PDB:1Y77 PDB:2B63 PDB:2B8K PDB:2E2H PDB:2E2I
PDB:2E2J PDB:2JA5 PDB:2JA6 PDB:2JA7 PDB:2JA8 PDB:2NVQ PDB:2NVT
PDB:2NVX PDB:2NVY PDB:2NVZ PDB:2R7Z PDB:2R92 PDB:2R93 PDB:2VUM
PDB:2YU9 PDB:3CQZ PDB:3FKI PDB:3GTG PDB:3GTJ PDB:3GTK PDB:3GTL
PDB:3GTM PDB:3GTO PDB:3GTP PDB:3GTQ PDB:3H3V PDB:3HOU PDB:3HOV
PDB:3HOW PDB:3HOX PDB:3HOY PDB:3HOZ PDB:3I4M PDB:3I4N PDB:3K1F
PDB:3K7A PDB:3M3Y PDB:3M4O PDB:3PO2 PDB:3PO3 PDB:3QT1 PDB:3RZD
PDB:3RZO PDB:3S14 PDB:3S15 PDB:3S16 PDB:3S17 PDB:3S1M PDB:3S1N
PDB:3S1Q PDB:3S1R PDB:3S2D PDB:3S2H PDB:4A3B PDB:4A3C PDB:4A3D
PDB:4A3E PDB:4A3F PDB:4A3G PDB:4A3I PDB:4A3J PDB:4A3K PDB:4A3L
PDB:4A3M PDB:4A93 PDB:4BBR PDB:4BBS PDBsum:1I3Q PDBsum:1I50
PDBsum:1I6H PDBsum:1K83 PDBsum:1NIK PDBsum:1NT9 PDBsum:1PQV
PDBsum:1R5U PDBsum:1R9S PDBsum:1R9T PDBsum:1SFO PDBsum:1TWA
PDBsum:1TWC PDBsum:1TWF PDBsum:1TWG PDBsum:1TWH PDBsum:1WCM
PDBsum:1Y1V PDBsum:1Y1W PDBsum:1Y1Y PDBsum:1Y77 PDBsum:2B63
PDBsum:2B8K PDBsum:2E2H PDBsum:2E2I PDBsum:2E2J PDBsum:2JA5
PDBsum:2JA6 PDBsum:2JA7 PDBsum:2JA8 PDBsum:2NVQ PDBsum:2NVT
PDBsum:2NVX PDBsum:2NVY PDBsum:2NVZ PDBsum:2R7Z PDBsum:2R92
PDBsum:2R93 PDBsum:2VUM PDBsum:2YU9 PDBsum:3CQZ PDBsum:3FKI
PDBsum:3GTG PDBsum:3GTJ PDBsum:3GTK PDBsum:3GTL PDBsum:3GTM
PDBsum:3GTO PDBsum:3GTP PDBsum:3GTQ PDBsum:3H3V PDBsum:3HOU
PDBsum:3HOV PDBsum:3HOW PDBsum:3HOX PDBsum:3HOY PDBsum:3HOZ
PDBsum:3I4M PDBsum:3I4N PDBsum:3K1F PDBsum:3K7A PDBsum:3M3Y
PDBsum:3M4O PDBsum:3PO2 PDBsum:3PO3 PDBsum:3QT1 PDBsum:3RZD
PDBsum:3RZO PDBsum:3S14 PDBsum:3S15 PDBsum:3S16 PDBsum:3S17
PDBsum:3S1M PDBsum:3S1N PDBsum:3S1Q PDBsum:3S1R PDBsum:3S2D
PDBsum:3S2H PDBsum:4A3B PDBsum:4A3C PDBsum:4A3D PDBsum:4A3E
PDBsum:4A3F PDBsum:4A3G PDBsum:4A3I PDBsum:4A3J PDBsum:4A3K
PDBsum:4A3L PDBsum:4A3M PDBsum:4A93 PDBsum:4BBR PDBsum:4BBS
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 OrthoDB:EOG4J14H5
EMBL:X03128 EMBL:Z74188 PIR:S67686 RefSeq:NP_010141.1 PDB:2L0I
PDBsum:2L0I ProteinModelPortal:P04050 SMR:P04050 DIP:DIP-611N
IntAct:P04050 MINT:MINT-432838 STRING:P04050 PaxDb:P04050
PeptideAtlas:P04050 EnsemblFungi:YDL140C GeneID:851415
KEGG:sce:YDL140C CYGD:YDL140c GeneTree:ENSGT00700000105212
EvolutionaryTrace:P04050 NextBio:968606 ArrayExpress:P04050
Genevestigator:P04050 GermOnline:YDL140C Uniprot:P04050
Length = 1733
Score = 191 (72.3 bits), Expect = 7.6e-10, Sum P(2) = 7.6e-10
Identities = 79/251 (31%), Positives = 104/251 (41%)
Query: 222 LRAELMNAPNVDRRAADGSYGGAT--GNSENETSGRPVGQNAYED-----GYGVPQGHGP 274
++ ELM +P VD + D GG T G ++ + P G AY + G+GV
Sbjct: 1486 VKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFG--AYGEAPTSPGFGVSSPGFS 1543
Query: 275 PPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDP 334
P S T + A TS S + S +P +Y P P Y + P Y + +PSY P
Sbjct: 1544 PTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPTS-PSYSPT-SPSYSP 1600
Query: 335 TKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGP 394
T PSY P P Y PT P Y S Y + P+Y PSY P Y P
Sbjct: 1601 TS-PSYSPTS-PSYSPTS-PSYSPTSPS-Y-SPTSPSYS-PTSPSYSPTSP-SYS-PTSP 1652
Query: 395 NYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDP 454
+Y P Y P Y P Y + +PSY P P Y Y +PSY P
Sbjct: 1653 SYS-PTSPAYSPTS-PSYS-PTSPSY-SPTSPSYSPT-SPSYS-PTSPNYSPT-SPSYSP 1705
Query: 455 SRGTGFD-GAP 464
+ G+ G+P
Sbjct: 1706 T-SPGYSPGSP 1715
Score = 38 (18.4 bits), Expect = 7.6e-10, Sum P(2) = 7.6e-10
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHEL 90
E + + H+E Q L T AA R +L H L
Sbjct: 870 EDGMDAAHIEKQSLDTIGGSDAAFEKRYRVDLLNTDHTL 908
>UNIPROTKB|F1PB61 [details] [associations]
symbol:TAF15 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00641 PROSITE:PS01358
PROSITE:PS50102 PROSITE:PS50199 SMART:SM00360 SMART:SM00547
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 GeneTree:ENSGT00530000063105 CTD:8148 KO:K14651
OMA:YGNQGSQ EMBL:AAEX03006620 EMBL:AAEX03006619 RefSeq:XP_548255.2
ProteinModelPortal:F1PB61 Ensembl:ENSCAFT00000028877 GeneID:491135
KEGG:cfa:491135 Uniprot:F1PB61
Length = 571
Score = 155 (59.6 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 69/221 (31%), Positives = 78/221 (35%)
Query: 258 GQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYE 317
G+ Y G G QG G P + V P+ +A S P
Sbjct: 335 GRGGYR-GRGGFQGRGGDPKS--GDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPSGG 391
Query: 318 ASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGY--DAQKGSNYDAQR-GPNYDI 374
+G GY + Y G D G G D + G GY D G Y R G Y
Sbjct: 392 DFRGRGYGGERG--YRGRGGRGGDRG-GYGADRSSG-GYGGDRSGGGGYGGDRSGGGYGG 447
Query: 375 HR-GPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRG 433
R G Y RG GY RG Y RG GY R GY RG Y R Y RG
Sbjct: 448 DRSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRG 507
Query: 434 PGYDLQR-GQGY--DMRRAPSYDPSRGTGFDGAPRGAAPHG 471
GY R G GY D Y RG G+ G R +G
Sbjct: 508 -GYGGDRSGGGYGGDRGGGGGYGGDRGGGY-GGDRSGGGYG 546
Score = 155 (59.6 bits), Expect = 8.2e-08, P = 8.2e-08
Identities = 68/233 (29%), Positives = 84/233 (36%)
Query: 242 GGATGNSENETSGRPVGQNAYEDGYGVPQ-GHGPPPSATTAGVVGAGPNTSTSAYAAT-Q 299
GG +G G G+ ++ G P+ G P+ + + A N+ +
Sbjct: 326 GGGSGGGRRGRGGYR-GRGGFQGRGGDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPE 384
Query: 300 SGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGY--DPTKGPGYD 357
P + RG GY +G Y D G D + G GY D + G GY
Sbjct: 385 DSRPSGGDF---RGRGYGGERG--YRGRGGRGGD-RGGYGADRSSG-GYGGDRSGGGGYG 437
Query: 358 AQK-GSNYDAQR-GPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQ 415
+ G Y R G Y RG Y RG GY RG Y RG GY R GY
Sbjct: 438 GDRSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGD 497
Query: 416 RGPVYEAQRAPSYIPQRGPGYDLQRGQG--YDMRRAPSYDPSRGTGFDGAPRG 466
RG Y R + G GY RG G Y R Y R G G RG
Sbjct: 498 RGGGYGGDRGGYGGDRSGGGYGGDRGGGGGYGGDRGGGYGGDRSGGGYGGDRG 550
Score = 145 (56.1 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 52/152 (34%), Positives = 61/152 (40%)
Query: 305 RAAYDIPR---GPGYEASKGPGYDASKAPS-YDPTK-GPSYDPAKGPGYDPTKGPGYDAQ 359
R Y R G G + S G GY ++ Y + G Y +G GY +G GY
Sbjct: 414 RGGYGADRSSGGYGGDRSGGGGYGGDRSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGD 473
Query: 360 KGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQR-GPGYETQRVPG--YDVQR 416
+G Y RG Y RG Y RG GY RG Y R G GY R G Y R
Sbjct: 474 RGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRG-GYGGDRSGGGYGGDRGGGGGYGGDR 532
Query: 417 GPVYEAQRAPS-YIPQRGPGYDLQRGQGYDMR 447
G Y R+ Y RG GY + G D R
Sbjct: 533 GGGYGGDRSGGGYGGDRG-GYGGKMGGRNDYR 563
Score = 119 (46.9 bits), Expect = 0.00072, P = 0.00072
Identities = 47/167 (28%), Positives = 61/167 (36%)
Query: 235 RAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSA 294
R G G G + +SG G + GYG + G + G G G +
Sbjct: 405 RGRGGRGGDRGGYGADRSSGGYGGDRSGGGGYGGDRSGGGYGGDRSGG--GYGGDRG-GG 461
Query: 295 YAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTK-G 353
Y + G Y RG GY +G GY + Y +G Y +G GY + G
Sbjct: 462 YGGDRGG-----GYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRG-GYGGDRSG 515
Query: 354 PGYDAQKGSN--YDAQRGPNYDIHR-GPSYDPQRGLGYDMQRGPNYD 397
GY +G Y RG Y R G Y RG GY + G D
Sbjct: 516 GGYGGDRGGGGGYGGDRGGGYGGDRSGGGYGGDRG-GYGGKMGGRND 561
Score = 62 (26.9 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 27/107 (25%), Positives = 46/107 (42%)
Query: 184 YHHCRGTYEYEKKF------YNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRAA 237
Y +G+Y+ + + YN + +S NY + T+ + R ++ D R
Sbjct: 121 YDQHQGSYDEQSNYGPQHDSYNQNQQSYHSQRDNY-SHHTQDD--RRDVSRYGE-DNRGY 176
Query: 238 DGSYGGATGNSENETSGR-PV-GQNAYEDG----YGVPQGHGPPPSA 278
GS GG G + GR P+ G + + G +G + +GP P A
Sbjct: 177 GGSQGGGRGRGGYDKDGRGPMTGSSGGDRGGFKNFGGHRDYGPRPDA 223
>FB|FBgn0028573 [details] [associations]
symbol:prc "pericardin" species:7227 "Drosophila
melanogaster" [GO:0005605 "basal lamina" evidence=NAS] [GO:0007507
"heart development" evidence=IMP;TAS] [GO:0005578 "proteinaceous
extracellular matrix" evidence=IDA] [GO:0035088 "establishment or
maintenance of apical/basal cell polarity" evidence=TAS]
[GO:0016477 "cell migration" evidence=TAS] [GO:0002009
"morphogenesis of an epithelium" evidence=TAS] GO:GO:0002009
GO:GO:0007507 GO:GO:0005578 FlyBase:FBgn0028573 InterPro:IPR009765
Pfam:PF07054 EMBL:AF203342 STRING:Q9U617 PRIDE:Q9U617
InParanoid:Q9U617 ArrayExpress:Q9U617 Bgee:Q9U617 Uniprot:Q9U617
Length = 1729
Score = 173 (66.0 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 87/276 (31%), Positives = 100/276 (36%)
Query: 236 AADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPS--ATTAGVVGAGPNTSTS 293
A YGG G S G+P G G+P G+G P A TA V G T
Sbjct: 871 AGQSGYGGQPGISGQTGGGQP-GYGGQATISGLP-GYGTQPGIGALTA-VPGGHYGYETQ 927
Query: 294 AYAATQSGTPMRAAYDIPRGPGYEASKG-PGYDASKAPSYDPTKGPSYDPAKGPGYDPTK 352
Q+GT P G G + G PGY P G S + PGY
Sbjct: 928 PGIGGQTGTNQPGFGGQP-GIGGQTGAGQPGYGFIGQPGIGGQTGTS---GRQPGYGTQP 983
Query: 353 GPGYDAQKGS-NYDAQRGPNYDIHRG-PSYDPQRGLGYDMQRG-PNYDMQRGPGYETQR- 408
G G G Y +Q G G P Y Q G+G + G P Y Q G G +T
Sbjct: 984 GIGGQTAAGQPGYGSQPGIGGQTGAGQPGYGSQTGVGGQIGAGQPGYGSQPGIGGQTGAG 1043
Query: 409 VPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAA 468
PGY Q G + Q P Y Q PG Q G G P Y G G G
Sbjct: 1044 QPGYGAQPG--FGGQ--PGYGNQ--PGVGGQTGAGQ-----PGYGSQPGVG--GQTGAGQ 1090
Query: 469 PHGQVPPPLNNVP-YGSATPPARSG-SGQPR-GGNP 501
P V P P G T + G GQP GG+P
Sbjct: 1091 PGYGVIPGFGGQPGIGGQTAAGKPGYGGQPGIGGSP 1126
Score = 173 (66.0 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 82/279 (29%), Positives = 99/279 (35%)
Query: 236 AADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGV---VGAG-PNTS 291
A YG G +G+P G + G G G G P T G+ GAG P
Sbjct: 412 AGQPGYGTQPGIGGQTGAGQP-GYGT-QPGIGAQTGAGQPGYGTQPGIGGQTGAGQPGYG 469
Query: 292 TSAYAATQSGTPMRAAYDIPRGPGYEASKG-PGYDASKAPSYDPTKG-PSYDPAKGPGYD 349
T Q+G + Y G G + G PGY + G P Y G G
Sbjct: 470 TQPGIGVQTGAG-QPGYGSQPGIGAQTGAGQPGYGSQPGIGGQTGAGQPGYGSQPGIGGQ 528
Query: 350 PTKG-PGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRG-PNYDMQRGPGYETQ 407
G PGY Q G AQ G P Y Q G+G G P Y Q G G +T
Sbjct: 529 TGAGQPGYGTQPGIG--AQTGAGQ-----PGYGSQPGIGGQTGAGQPGYGSQPGIGGQTG 581
Query: 408 R-VPGYDVQRGPVYEAQRA-PSYIPQRGPGYDLQRGQ-GYDMRRAPSYDPSRGT-GFDGA 463
PGY Q G + P Y Q G G + GQ GY + G G+
Sbjct: 582 AGQPGYGTQPGVGAQTGTGQPGYGSQPGVGTQIGAGQPGYGSQPGIGGQTGAGQPGYGSQ 641
Query: 464 PRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPR-GGNP 501
P G P P G A++G+GQP G P
Sbjct: 642 PGIGGQTGAAQPGYGTQP-GVG---AQTGTGQPGYGAQP 676
Score = 165 (63.1 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 83/284 (29%), Positives = 103/284 (36%)
Query: 230 PNVDRRAADGS--YGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGV---V 284
P + + A G YG G +G+P G A + G G G G P + G+
Sbjct: 149 PGIGGQTATGQPGYGSQLGVGAQAGAGQP-GYGA-QPGVGAQTGAGQPGYGSQTGIGGQT 206
Query: 285 GAG-PNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKG-PGYDASKAPSYDPTKG-PSYD 341
GAG P + Q+G + Y G G + G PGY + G P Y
Sbjct: 207 GAGQPGYGSQPGIGGQTGAG-QPGYGSQPGIGGQTGAGQPGYGSQPGIGGQTGAGQPGYG 265
Query: 342 PAKGPGYDPTKG-PGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRG-PNYDMQ 399
G G G PGY +Q G Q G P Y Q G+G G P Y Q
Sbjct: 266 SQPGIGGQTGAGQPGYGSQPGIG--GQTGAGQ-----PGYGTQPGIGGQTGAGQPGYGSQ 318
Query: 400 RGPGYETQR-VPGYDVQRGPVYEAQRA-PSYIPQRGPGYDLQRGQ-GYDMRRAPSYDPSR 456
G G +T PGY Q G + P Y Q G G GQ GY + P
Sbjct: 319 PGIGGQTGAGQPGYGSQPGIGGQTGAGQPGYGTQPGIGGQTGAGQPGYGTQ--PGIGGQT 376
Query: 457 GTGFDGAPRGAAPHGQVPPPLNNVPYGSATP-PARSGSGQPRGG 499
G G G GQ P YGS ++G+GQP G
Sbjct: 377 GPGQPGYGTQPGIGGQTGP--GQPGYGSQPGIGGQTGAGQPGYG 418
Score = 165 (63.1 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 83/285 (29%), Positives = 102/285 (35%)
Query: 230 PNVDRRAADGS--YGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGV---V 284
P + + G YG G G+P G + + G G G G P T G+
Sbjct: 370 PGIGGQTGPGQPGYGTQPGIGGQTGPGQP-GYGS-QPGIGGQTGAGQPGYGTQPGIGGQT 427
Query: 285 GAG-PNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKG-PGYDASKAPSYDPTKG-PSYD 341
GAG P T Q+G + Y G G + G PGY G P Y
Sbjct: 428 GAGQPGYGTQPGIGAQTGAG-QPGYGTQPGIGGQTGAGQPGYGTQPGIGVQTGAGQPGYG 486
Query: 342 PAKGPGYDPTKG-PGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRG-PNYDMQ 399
G G G PGY +Q G Q G P Y Q G+G G P Y Q
Sbjct: 487 SQPGIGAQTGAGQPGYGSQPGIG--GQTGAGQ-----PGYGSQPGIGGQTGAGQPGYGTQ 539
Query: 400 RGPGYETQR-VPGYDVQRGPVYEAQRA-PSYIPQRGPGYDLQRGQ-GYDMRRAPSYDPSR 456
G G +T PGY Q G + P Y Q G G GQ GY + P
Sbjct: 540 PGIGAQTGAGQPGYGSQPGIGGQTGAGQPGYGSQPGIGGQTGAGQPGYGTQ--PGVGAQT 597
Query: 457 GTGFDGAPRGAAPHGQVPPPLNNVPYGSATP-PARSGSGQPRGGN 500
GTG G G+ P YGS ++G+GQP G+
Sbjct: 598 GTGQPGY--GSQPGVGTQIGAGQPGYGSQPGIGGQTGAGQPGYGS 640
Score = 158 (60.7 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 85/283 (30%), Positives = 101/283 (35%)
Query: 236 AADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGV---VGAG-PNTS 291
A YG G +G+P G + G GV G G P + G+ GAG P
Sbjct: 446 AGQPGYGTQPGIGGQTGAGQP-GYGT-QPGIGVQTGAGQPGYGSQPGIGAQTGAGQPGYG 503
Query: 292 TSAYAATQSGTPMRAAYDIPRGPGYEASKG-PGYDASKAPSYDPTKG-PSYDPAKGPGYD 349
+ Q+G + Y G G + G PGY G P Y G G
Sbjct: 504 SQPGIGGQTGAG-QPGYGSQPGIGGQTGAGQPGYGTQPGIGAQTGAGQPGYGSQPGIGGQ 562
Query: 350 PTKG-PGYDAQKGSNYDAQRG-PNYDIHRGPSYDPQRGL-GYDMQRGPNYDMQRG-PGYE 405
G PGY +Q G G P Y G G GY Q G + G PGY
Sbjct: 563 TGAGQPGYGSQPGIGGQTGAGQPGYGTQPGVGAQTGTGQPGYGSQPGVGTQIGAGQPGYG 622
Query: 406 TQRVPGYDVQRG---PVYEAQRAPSYIPQRG---PGYDLQRGQGYDMRRA-PSYDPSRGT 458
+Q PG Q G P Y +Q P Q G PGY Q G G P Y G
Sbjct: 623 SQ--PGIGGQTGAGQPGYGSQ--PGIGGQTGAAQPGYGTQPGVGAQTGTGQPGYGAQPGI 678
Query: 459 GFD-GAPRGAAPHGQVPPPLNNVPYGSATPPARSGSG-QPRGG 499
G GA G +G+ P G T P + G G QP G
Sbjct: 679 GGQTGA--GQPGYGRQPG------IGGQTGPGQPGYGTQPGVG 713
Score = 154 (59.3 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 78/247 (31%), Positives = 90/247 (36%)
Query: 242 GGATGNSENETS-G-RPV--GQNAY-EDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYA 296
GG TG S + G +P GQ A + GYG G G T AG G G T
Sbjct: 967 GGQTGTSGRQPGYGTQPGIGGQTAAGQPGYGSQPGIG---GQTGAGQPGYGSQTGVGGQI 1023
Query: 297 ATQSGTPMRAAYDIPRGPGYEASKG-PGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPG 355
+G P Y G G + G PGY A P + G P G G PG
Sbjct: 1024 G--AGQP---GYGSQPGIGGQTGAGQPGYGAQ--PGFGGQPGYGNQPGVG-GQTGAGQPG 1075
Query: 356 YDAQKGSNYDAQRG-PNYDIHRGPSYDPQRGLGYDMQRG-PNYDMQRG----PGYETQRV 409
Y +Q G G P Y + P + Q G+G G P Y Q G P Y TQ+
Sbjct: 1076 YGSQPGVGGQTGAGQPGYGVI--PGFGGQPGIGGQTAAGKPGYGGQPGIGGSPVYGTQQG 1133
Query: 410 PG--YDVQRG-PVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRA-PSYDPSRGTGFDGAP- 464
G + G P Y Q P PGY G G P Y P G GAP
Sbjct: 1134 TGGPSGISGGQPGYGTQ--PGQTGAGQPGYGSLPGTGGQATAGQPGYGPGSQPGIGGAPV 1191
Query: 465 RGAAPHG 471
G P G
Sbjct: 1192 YGTQPGG 1198
Score = 150 (57.9 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 85/304 (27%), Positives = 114/304 (37%)
Query: 209 EKNYITMATEVEKLRAELMNAPNVDRRAADGSYGGATGNSENE-TSGRPVGQNAYEDGYG 267
+ Y+ E +AE N R G++G G ++++ +SG G + Y+ Y
Sbjct: 50 QSQYLNFGKPEEDGKAEAEATENGSRSTVSGTHG--MGQAQSQFSSGDCNGCSGYQTDY- 106
Query: 268 VPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKG-PGYDA 326
P G A+ +G +G P++ S G A PGY + G G A
Sbjct: 107 -PSS-GRILDASGSGGIGR-PDSIISLPGGV--GGQTGAGQ-----PGYGSQPGIGGQTA 156
Query: 327 SKAPSYDPTKGPSYDPAKG-PGYDPTKGPGYDAQKGSN---YDAQRGPNYDIHRG-PSYD 381
+ P Y G G PGY PG AQ G+ Y +Q G G P Y
Sbjct: 157 TGQPGYGSQLGVGAQAGAGQPGYGAQ--PGVGAQTGAGQPGYGSQTGIGGQTGAGQPGYG 214
Query: 382 PQRGLGYDMQRG-PNYDMQRGPGYETQR-VPGYDVQRGPVYEAQRA-PSYIPQRGPGYDL 438
Q G+G G P Y Q G G +T PGY Q G + P Y Q G G
Sbjct: 215 SQPGIGGQTGAGQPGYGSQPGIGGQTGAGQPGYGSQPGIGGQTGAGQPGYGSQPGIGGQT 274
Query: 439 QRGQ-GYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATP-PARSGSGQP 496
GQ GY + P G G G GQ YGS ++G+GQP
Sbjct: 275 GAGQPGYGSQ--PGIGGQTGAGQPGYGTQPGIGGQTGA--GQPGYGSQPGIGGQTGAGQP 330
Query: 497 RGGN 500
G+
Sbjct: 331 GYGS 334
Score = 148 (57.2 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 84/278 (30%), Positives = 98/278 (35%)
Query: 235 RAADGSYGGATGNSENETS--GRPVGQN-AYEDGYGVPQGHGPPPSATTAGVVGAGPNTS 291
R D S G G ++ S G GQ A + GYG G G T G G G
Sbjct: 111 RILDASGSGGIGRPDSIISLPGGVGGQTGAGQPGYGSQPGIG---GQTATGQPGYGSQLG 167
Query: 292 TSAYAATQSGTPMRAAYDIPRGPGYEASKG-PGYDASKAPSYDPTKG-PSYDPAKGPGYD 349
A A +G P Y G G + G PGY + G P Y G G
Sbjct: 168 VGAQAG--AGQP---GYGAQPGVGAQTGAGQPGYGSQTGIGGQTGAGQPGYGSQPGIGGQ 222
Query: 350 PTKG-PGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRG-PNYDMQRGPGYETQ 407
G PGY +Q G Q G P Y Q G+G G P Y Q G G +T
Sbjct: 223 TGAGQPGYGSQPGIG--GQTGAGQ-----PGYGSQPGIGGQTGAGQPGYGSQPGIGGQTG 275
Query: 408 R-VPGYDVQRGPVYEAQRA-PSYIPQRGPGYDLQRGQ-GYDMRRAPSYDPSRGTGFDGAP 464
PGY Q G + P Y Q G G GQ GY + P G G G
Sbjct: 276 AGQPGYGSQPGIGGQTGAGQPGYGTQPGIGGQTGAGQPGYGSQ--PGIGGQTGAGQPGYG 333
Query: 465 RGAAPHGQVPPPLNNVPYGSATPPA---RSGSGQPRGG 499
GQ YG T P ++G+GQP G
Sbjct: 334 SQPGIGGQTGA--GQPGYG--TQPGIGGQTGAGQPGYG 367
Score = 144 (55.7 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 85/297 (28%), Positives = 102/297 (34%)
Query: 230 PNVDRRAADGS--YGGATGNSENETSGRPVGQNAYEDGYGVPQGH-GPPPSATTAGVVGA 286
P + + G YGG S G G A VP GH G G G
Sbjct: 880 PGISGQTGGGQPGYGGQATISGLPGYGTQPGIGALT---AVPGGHYGYETQPGIGGQTGT 936
Query: 287 G-PNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKG 345
P Q+G + Y PG G + + P Y G A G
Sbjct: 937 NQPGFGGQPGIGGQTGAG-QPGYGFIGQPGIGGQTGT---SGRQPGYGTQPGIGGQTAAG 992
Query: 346 -PGYDPTKGPGYDAQKGS-NYDAQRGPNYDIHRG-PSYDPQRGLGYDMQRG-PNYDMQRG 401
PGY G G G Y +Q G I G P Y Q G+G G P Y Q G
Sbjct: 993 QPGYGSQPGIGGQTGAGQPGYGSQTGVGGQIGAGQPGYGSQPGIGGQTGAGQPGYGAQPG 1052
Query: 402 ----PGYETQRVPGYDVQRG---PVYEAQRAPSYIPQRG---PGYDL------QRGQGYD 445
PGY Q PG Q G P Y +Q P Q G PGY + Q G G
Sbjct: 1053 FGGQPGYGNQ--PGVGGQTGAGQPGYGSQ--PGVGGQTGAGQPGYGVIPGFGGQPGIGGQ 1108
Query: 446 MRRA-PSYDPSRGTGFDGAPRGAAPHGQVPPP-LNNVPYGSATPPARSGSGQPRGGN 500
P Y G G G+P G P ++ G T P ++G+GQP G+
Sbjct: 1109 TAAGKPGYGGQPGIG--GSPVYGTQQGTGGPSGISGGQPGYGTQPGQTGAGQPGYGS 1163
Score = 125 (49.1 bits), Expect = 0.00062, P = 0.00062
Identities = 72/250 (28%), Positives = 89/250 (35%)
Query: 236 AADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGV---VGAG-PNTS 291
AA YG G +G+P G A + G G G G P G+ G G P
Sbjct: 650 AAQPGYGTQPGVGAQTGTGQP-GYGA-QPGIGGQTGAGQPGYGRQPGIGGQTGPGQPGYG 707
Query: 292 TSAYAATQSGTPMRAAYDIPRGPGYEASKG-PGYDASKAPSYDPTKG-PSYDPAKGPGYD 349
T TQ+GT + Y G G ++ G PGY + G P Y G G
Sbjct: 708 TQPGVGTQTGTG-QPGYGAQPGIGGQSGAGQPGYGSQPGIGGQTGGGQPGYGSQIG-GQT 765
Query: 350 PTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRG-PNYDMQRG----PGY 404
P Y +Q G AQ G P Y + +G G P Y Q G PG+
Sbjct: 766 GAGQPSYGSQPGVG--AQNGGGQ-----PGYGTRPVIGGQTGAGQPGYGGQTGVGGSPGF 818
Query: 405 ETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAP 464
TQ PG GP+ + PGY Q G G R Y G G D
Sbjct: 819 LTQ--PGIGGISGPI-GGKVGGGQSEAAKPGYWAQPGIGGPSR----YGSQPGIG-DQTG 870
Query: 465 RGAAPHGQVP 474
G + +G P
Sbjct: 871 AGQSGYGGQP 880
>WB|WBGene00020550 [details] [associations]
symbol:T17H7.1 species:6239 "Caenorhabditis elegans"
[GO:0019915 "lipid storage" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
GO:GO:0009792 GO:GO:0019915 InterPro:IPR003677 Pfam:PF02520
EMBL:FO080638 PIR:T28899 RefSeq:NP_497250.1
ProteinModelPortal:Q22537 PaxDb:Q22537 EnsemblMetazoa:T17H7.1
GeneID:175228 KEGG:cel:CELE_T17H7.1 UCSC:T17H7.1 CTD:175228
WormBase:T17H7.1 eggNOG:NOG271901 GeneTree:ENSGT00700000104820
HOGENOM:HOG000020548 InParanoid:Q22537 OMA:GRGQGPD NextBio:887312
Uniprot:Q22537
Length = 682
Score = 168 (64.2 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 75/276 (27%), Positives = 101/276 (36%)
Query: 234 RRAADGSYGG-ATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTST 292
RR G G G +N G G+ +G P + + + GP++
Sbjct: 225 RRGGRGDGPGFVPGTQDNNQRGS--GERGQRQNFG-PSDNLTNGNQFSKKQFARGPSSMN 281
Query: 293 SAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKG-PGYDPT 351
S + + + +D PRGPG +G G D +GP + P PG +
Sbjct: 282 SDLSENSQHSDSNSQFDFPRGPGGRGGRGQGPDFGPGGQGGRGQGPDFGPQDDFPGRRGS 341
Query: 352 KGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRG-LGYDMQRGPNYDM--QRG---PGYE 405
GPG +G D + ++ RG +RG G GP D +RG PG
Sbjct: 342 GGPGGRGGRGQGPDFEPQDDFPGRRGSGGPGRRGGRGQGPDFGPQDDFPGRRGSGGPGGR 401
Query: 406 TQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDL--QRGQGYDMRRAPSYDPSRGTGFDGA 463
R G D GP + R P GP D +RG G P RG D
Sbjct: 402 GGRGQGPDF--GPGRQGGRGQG--PDFGPQDDFSGRRGSG-----GPGGRGGRGQEPDFG 452
Query: 464 PRGAAPHGQVPP--PLNNVP--YGSATPPARSGSGQ 495
P G GQ P P ++ P GS P R G GQ
Sbjct: 453 PGGQGGRGQGPDFGPQDDFPGRRGSGGPEGRDGRGQ 488
Score = 139 (54.0 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 76/265 (28%), Positives = 93/265 (35%)
Query: 242 GGATGNSENETSGRPVGQNAYEDG--YGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQ 299
GG G + G P GQ G +G PQ P + G G G + Q
Sbjct: 304 GGRGGRGQGPDFG-PGGQGGRGQGPDFG-PQDDFPGRRGS-GGPGGRGGRGQGPDFEP-Q 359
Query: 300 SGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGP-GYDPTKGPGYDA 358
P R GPG +G G D + +G +G G P GPG
Sbjct: 360 DDFPGRRGSG---GPGRRGGRGQGPDFGPQDDFPGRRGSGGPGGRGGRGQGPDFGPGRQG 416
Query: 359 QKGSNYDAQRGPNYDI--HRGPSYDPQRG-LGYDMQRGPNYDMQRG--PGYETQR-VPGY 412
+G D GP D RG RG G + GP RG P + Q PG
Sbjct: 417 GRGQGPDF--GPQDDFSGRRGSGGPGGRGGRGQEPDFGPGGQGGRGQGPDFGPQDDFPGR 474
Query: 413 DVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQ 472
GP E + P GPG RGQ D ++ RG+G G RG P
Sbjct: 475 RGSGGP--EGRDGRGQGPDFGPGSQGGRGQDSDSGSQDAFPGRRGSGGPGG-RGQGPDFG 531
Query: 473 VPPPLNNVP--YGSATPPARSGSGQ 495
P ++ P GS P R G GQ
Sbjct: 532 ---PQDDFPGRRGSGGPEGRDGRGQ 553
>UNIPROTKB|P71590 [details] [associations]
symbol:fhaA "FHA domain-containing protein FhaA"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000253 InterPro:IPR008984 Pfam:PF00498 PROSITE:PS50006
SMART:SM00240 GO:GO:0005829 GO:GO:0005618 GenomeReviews:AL123456_GR
EMBL:BX842572 Gene3D:2.60.200.20 SUPFAM:SSF49879 PIR:B70700
RefSeq:NP_214534.1 RefSeq:YP_006513334.1 PDB:2LC0 PDB:2LC1 PDB:3OUN
PDB:3PO8 PDB:3POA PDBsum:2LC0 PDBsum:2LC1 PDBsum:3OUN PDBsum:3PO8
PDBsum:3POA ProteinModelPortal:P71590 SMR:P71590 DIP:DIP-59047N
PhosSite:P12071703 PRIDE:P71590 EnsemblBacteria:EBMYCT00000001781
GeneID:13315997 GeneID:887067 KEGG:mtu:Rv0020c KEGG:mtv:RVBD_0020c
PATRIC:18148538 TubercuList:Rv0020c HOGENOM:HOG000235804
OMA:DQGYGQP ProtClustDB:CLSK790198 EvolutionaryTrace:P71590
InterPro:IPR022128 Pfam:PF12401 Uniprot:P71590
Length = 527
Score = 162 (62.1 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 84/244 (34%), Positives = 98/244 (40%)
Query: 275 PPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKA-PSYD 333
P T V+ S A+ A PM G G + YD A P D
Sbjct: 127 PDVETHPPVIDCARPQSNHAFGAEPGVAPMSDNSSYRGGQG-QGRPDEYYDDRYARPQED 185
Query: 334 PTKGPSYDPAKGP--GYDPTKGPGYDAQKGSNYDAQRGPNY-DIHRGPSYDPQRGLGYDM 390
P GP P GY P G GY Q G Y R P+ D Y P +G GY
Sbjct: 186 PRGGPDPQGGSDPRGGYPPETG-GYPPQPG--YPRPRHPDQGDYPEQIGY-PDQG-GYPE 240
Query: 391 QRGPNYDMQRG-P---GYETQRVPGY-DVQRG---PVYEAQRAP-SYIPQRG---PGYDL 438
QRG Y QRG P GY+ Q GY D +G P YE QR P S P G PGYD
Sbjct: 241 QRG--YPEQRGYPDQRGYQDQG-RGYPDQGQGGYPPPYE-QRPPVSPGPAAGYGAPGYD- 295
Query: 439 QRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNN---VPYGSATPPARSGSGQ 495
QGY R++ Y PS G G G G +G+ P VP G PP + +
Sbjct: 296 ---QGY--RQSGGYGPSPGGGQPGYG-GYGEYGRGPARHEEGSYVPSGPPGPPEQRPAYP 349
Query: 496 PRGG 499
+GG
Sbjct: 350 DQGG 353
Score = 122 (48.0 bits), Expect = 0.00030, P = 0.00030
Identities = 91/303 (30%), Positives = 111/303 (36%)
Query: 230 PNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGH---GPPPSATTAGVVGA 286
P V + + SY G G GRP Y+D Y PQ GP P + G
Sbjct: 151 PGVAPMSDNSSYRGGQGQ------GRP--DEYYDDRYARPQEDPRGGPDPQGGSDPRGGY 202
Query: 287 GPNTSTSAYAATQSGTPMRAAY----DIPRGPGYEASKG-P---GYDASKAPSYDPTKGP 338
P T Y Q G P R + D P GY G P GY + Y +G
Sbjct: 203 PPETG--GYPP-QPGYP-RPRHPDQGDYPEQIGYPDQGGYPEQRGYPEQRG--YPDQRG- 255
Query: 339 SYDPAKGPGYDPTKGPG-YDAQKGSNYDAQRGPNYDIHRGPSYDP---QRGLGYDMQRG- 393
Y +G GY P +G G Y GP + P YD Q G GY G
Sbjct: 256 -YQD-QGRGY-PDQGQGGYPPPYEQRPPVSPGPAAG-YGAPGYDQGYRQSG-GYGPSPGG 310
Query: 394 --PNY----DMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMR 447
P Y + RGP + G V GP ++ P+Y P +G GYD QG
Sbjct: 311 GQPGYGGYGEYGRGPARHEE---GSYVPSGPPGPPEQRPAY-PDQG-GYDQGYQQGATTY 365
Query: 448 RAPSYDPSRG-TGFDGAPR--GAAPHG--QVPPPLNNVPYG-SATP----PARSG-SGQP 496
Y T + +PR G AP G P + YG S P PA G SG
Sbjct: 366 GRQDYGGGADYTRYTESPRVPGYAPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYG 425
Query: 497 RGG 499
+GG
Sbjct: 426 QGG 428
>UNIPROTKB|Q92804 [details] [associations]
symbol:TAF15 "TATA-binding protein-associated factor 2N"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR000504 InterPro:IPR001876 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00641 PROSITE:PS01358 PROSITE:PS50102
PROSITE:PS50199 SMART:SM00360 SMART:SM00547 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471147 eggNOG:NOG240581 HOGENOM:HOG000038010 EMBL:AC015849
EMBL:U51334 EMBL:X98893 EMBL:AB010067 EMBL:AY197697 EMBL:AK313223
IPI:IPI00020194 IPI:IPI00294426 PIR:S71954 RefSeq:NP_003478.1
RefSeq:NP_631961.1 UniGene:Hs.402752 ProteinModelPortal:Q92804
SMR:Q92804 IntAct:Q92804 STRING:Q92804 PhosphoSite:Q92804
DMDM:8928305 PaxDb:Q92804 PRIDE:Q92804 DNASU:8148
Ensembl:ENST00000311979 GeneID:8148 KEGG:hsa:8148 UCSC:uc002hkc.3
UCSC:uc002hkd.3 CTD:8148 GeneCards:GC17P034136 HGNC:HGNC:11547
HPA:HPA052059 MIM:601574 neXtProt:NX_Q92804 PharmGKB:PA36322
HOVERGEN:HBG005755 InParanoid:Q92804 KO:K14651 OMA:YGNQGSQ
OrthoDB:EOG4MW872 PhylomeDB:Q92804 ChiTaRS:TAF15 GenomeRNAi:8148
NextBio:30819 PMAP-CutDB:Q92804 ArrayExpress:Q92804 Bgee:Q92804
CleanEx:HS_TAF15 Genevestigator:Q92804 GermOnline:ENSG00000172660
Uniprot:Q92804
Length = 592
Score = 162 (62.1 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 70/224 (31%), Positives = 85/224 (37%)
Query: 228 NAPNV-DRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGA 286
N P D R + G + G E GR G+ GYG + G ++G G
Sbjct: 380 NEPRPEDSRPSGGDFRGRGYGGERGYRGRG-GRGGDRGGYGGDRSGGGYGGDRSSGG-GY 437
Query: 287 GPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGP 346
+ S Y +SG Y RG GY +G GY + Y +G Y +G
Sbjct: 438 SGDRSGGGYGGDRSG----GGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRG-GYGGDRGG 492
Query: 347 GYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSY--DPQRGLGYDMQRGPNYDMQRGPGY 404
GY +G GY +G Y RG Y RG Y D RG GY RG G GY
Sbjct: 493 GYGGDRG-GYGGDRGG-YGGDRG-GYGGDRG-GYGGDRSRG-GYGGDRGG------GSGY 541
Query: 405 ETQRVPGYDVQR-GPVYEAQRAPSYIPQRGPGYDLQRGQGYDMR 447
R GY R G Y R Y RG GY + G D R
Sbjct: 542 GGDRSGGYGGDRSGGGYGGDRGGGYGGDRG-GYGGKMGGRNDYR 584
Score = 153 (58.9 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 60/164 (36%), Positives = 68/164 (41%)
Query: 312 RGPGYEASK-GPGY--DASKAPSYDPTK-GPSYDPAK-GPGYDPTKGPGYDAQKGSNYDA 366
RG GY + G GY D S Y + G Y + G GY +G GY +G Y
Sbjct: 415 RG-GYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGG 473
Query: 367 QRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAP 426
RG Y RG Y RG GY RG Y RG GY R GY RG Y R+
Sbjct: 474 DRGGGYGGDRG-GYGGDRGGGYGGDRG-GYGGDRG-GYGGDR-GGYGGDRGG-YGGDRSR 528
Query: 427 S-YIPQRG--PGYDLQRGQGYDMRRAPS-YDPSRGTGFDGAPRG 466
Y RG GY R GY R+ Y RG G+ G RG
Sbjct: 529 GGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDRGGGY-GGDRG 571
Score = 54 (24.1 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 23/97 (23%), Positives = 42/97 (43%)
Query: 188 RGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRAADGSYGGATGN 247
+ Y+ + Y+ + +S +NY + T+ + R ++ D R GS GG G
Sbjct: 132 QSNYDQQHDSYSQNQQSYHSQRENY-SHHTQDD--RRDVSRYGE-DNRGYGGSQGGGRGR 187
Query: 248 SENETSGR-PV-GQNAYEDG----YGVPQGHGPPPSA 278
+ GR P+ G + + G +G + +GP A
Sbjct: 188 GGYDKDGRGPMTGSSGGDRGGFKNFGGHRDYGPRTDA 224
>WB|WBGene00044109 [details] [associations]
symbol:K02E11.10 species:6239 "Caenorhabditis elegans"
[GO:0016021 "integral to membrane" evidence=IEA] EMBL:Z77665
RefSeq:NP_001024024.1 ProteinModelPortal:Q5FC49
EnsemblMetazoa:K02E11.10 GeneID:259661 KEGG:cel:CELE_K02E11.10
UCSC:K02E11.10 CTD:259661 WormBase:K02E11.10
GeneTree:ENSGT00530000065030 InParanoid:Q5FC49 OMA:VQASGYQ
NextBio:952394 Uniprot:Q5FC49
Length = 360
Score = 154 (59.3 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 69/224 (30%), Positives = 91/224 (40%)
Query: 265 GYGVPQGHGPPPSATTAGVVG-AGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPG 323
G+G G P A G+ G G A+ G A G G G G
Sbjct: 81 GFGGAGGSYAAP-ALGGGLGGFGGAPAPAPAFGGLGGGYQAAPALGGGLGGGLGGGPGGG 139
Query: 324 YDASKAPSYDPTKGPSYDPA---KGPGYD--PTKGPGYDAQKGSNYDAQRGP---NYDIH 375
Y A+ A P+ PA G GY PT G G AQ G+ Y Q+GP +
Sbjct: 140 YQAAPALQLPGLGAPA--PAFGGLGGGYQGAPTLGGG-QAQGGAGY--QQGPAQGRFVAQ 194
Query: 376 RGPSYDPQRGLGYDMQRGP---NYDMQRGPGYETQRVPGYDVQRGPV---YEAQRAPSYI 429
+G + Q G GY Q+GP + Q+GP Q GY Q+GP + AQ+ P+
Sbjct: 195 QGSAQGVQGGAGY--QQGPAQGGFTAQQGPAQVVQGGAGY--QQGPAQGGFVAQQGPAPA 250
Query: 430 PQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRG-AAPHGQ 472
Q G GY QG A ++G G+ A +G +AP Q
Sbjct: 251 AQGGAGYQQGSTQGGFEAVAQQGQVAQGAGYQSAAQGQSAPVSQ 294
>DICTYBASE|DDB_G0277909 [details] [associations]
symbol:cbpP "calcium-binding protein" species:44689
"Dictyostelium discoideum" [GO:0005509 "calcium ion binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR002048
InterPro:IPR011992 Pfam:PF13499 PROSITE:PS50222 SMART:SM00054
dictyBase:DDB_G0277909 Prosite:PS00018 GenomeReviews:CM000152_GR
EMBL:AAFI02000023 GO:GO:0005509 Gene3D:1.10.238.10
InterPro:IPR018247 EMBL:U03413 RefSeq:XP_642080.1
ProteinModelPortal:P35085 PRIDE:P35085 EnsemblProtists:DDB0214957
GeneID:8621293 KEGG:ddi:DDB_G0277909 eggNOG:NOG135385 OMA:MGAYPPQ
ProtClustDB:CLSZ2846833 Uniprot:P35085
Length = 467
Score = 155 (59.6 bits), Expect = 5.8e-08, P = 5.8e-08
Identities = 73/247 (29%), Positives = 89/247 (36%)
Query: 269 PQGHGPPPSATTAGVVGAGPNT--STSAYAATQS--GTPMRAAYDIPRGPGYEASKGPGY 324
PQ PPP+ + A P T +QS G P P+ PG S P Y
Sbjct: 4 PQN--PPPAGSAADFYSQMPVKVMGTPGAPGSQSTPGAPGAPGQYPPQQPGAPGSNLPPY 61
Query: 325 DASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRG-PNYDIHRGPSYDPQ 383
++ P G Y P + PG P + PG Q Q G P + Y PQ
Sbjct: 62 PGTQQPGAPGAPG-QYPPQQ-PGQYPPQQPGAPGQYPPQQPGQPGYPPQQPGQSGQYPPQ 119
Query: 384 R-GL-GYDMQR--GPN-YDMQRG-PGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYD 437
+ G GY Q+ P Y Q+G PG + PG Q P + Q P Q G
Sbjct: 120 QPGQPGYPPQQPGAPGQYPPQQGQPGQYPPQQPGQPGQYPPQQQGQYPPQQPGQPGAYPP 179
Query: 438 LQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPP---ARSGSG 494
Q GQ +Y P +G A GA VPPP P PP A G
Sbjct: 180 QQSGQ------PGAYPPQQGVQNTLAKTGAPGQPGVPPPQGAYPGQPGVPPQQGAYPGQQ 233
Query: 495 QPRGGNP 501
P G P
Sbjct: 234 PPMGAYP 240
Score = 139 (54.0 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 79/251 (31%), Positives = 98/251 (39%)
Query: 273 GPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSY 332
G P S +T G GA P Y Q G P ++P PG + PG P
Sbjct: 29 GAPGSQSTPGAPGA-PGQ----YPPQQPGAP---GSNLPPYPGTQQPGAPGAPGQYPPQ- 79
Query: 333 DPTKGPSYDPAKGPG-YDPTK-G-PGYDAQKGSNYDAQRGPNYDIHRGPSYDPQR-GL-G 387
P + P P PG Y P + G PGY Q+ Q P P Y PQ+ G G
Sbjct: 80 QPGQYPPQQPG-APGQYPPQQPGQPGYPPQQPGQ-SGQYPPQQPGQ--PGYPPQQPGAPG 135
Query: 388 -YDMQRG-PNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRG--PG-YDLQRGQ 442
Y Q+G P + PG Q P Q P Q +Y PQ+ PG Y Q+G
Sbjct: 136 QYPPQQGQPGQYPPQQPGQPGQYPPQQQGQYPPQQPGQPG-AYPPQQSGQPGAYPPQQGV 194
Query: 443 GYDMRRA-----PSYDPSRGT--GFDGAP--RGAAPHGQVPPPLNNVPYGSATPPARSGS 493
+ + P P +G G G P +GA P GQ PP P G P A
Sbjct: 195 QNTLAKTGAPGQPGVPPPQGAYPGQPGVPPQQGAYP-GQQPPMGAYPPQGQ--PGAYPPQ 251
Query: 494 GQPRGGNPARR 504
GQP G P ++
Sbjct: 252 GQP-GAYPPQQ 261
Score = 133 (51.9 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 83/276 (30%), Positives = 101/276 (36%)
Query: 243 GATGNSENETSGRPVGQNAYEDGY-GVPQGHGPP-PSATTAGVVGA-G--PNTSTSAYAA 297
GA G+ T G P Y G P + PP P G GA G P Y
Sbjct: 29 GAPGSQS--TPGAPGAPGQYPPQQPGAPGSNLPPYPGTQQPGAPGAPGQYPPQQPGQYPP 86
Query: 298 TQSGTPMRAAYDIPRGPGYEASKGPG----YDASKA--PSYDPTK--GPS-YDPAKG-PG 347
Q G P + P PGY + PG Y + P Y P + P Y P +G PG
Sbjct: 87 QQPGAPGQYPPQQPGQPGYPPQQ-PGQSGQYPPQQPGQPGYPPQQPGAPGQYPPQQGQPG 145
Query: 348 YDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQR-GL--GYDMQRGPNYDMQRGPGY 404
P + PG Q Q P G +Y PQ+ G Y Q+G + + G
Sbjct: 146 QYPPQQPGQPGQYPPQQQGQYPPQQPGQPG-AYPPQQSGQPGAYPPQQGVQNTLAK-TGA 203
Query: 405 ETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGA- 463
Q PG +G Y Q P PQ+G Y GQ M +Y P G GA
Sbjct: 204 PGQ--PGVPPPQG-AYPGQ--PGVPPQQG-AYP---GQQPPMG---AYPPQ---GQPGAY 248
Query: 464 PRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRGG 499
P P G PP V Y PP G+ P+ G
Sbjct: 249 PPQGQP-GAYPPQQQQVAYPGQQPPM--GAYPPQQG 281
>FB|FBgn0050203 [details] [associations]
symbol:CG30203 species:7227 "Drosophila melanogaster"
[GO:0004867 "serine-type endopeptidase inhibitor activity"
evidence=IEA] InterPro:IPR002223 Pfam:PF00014 PROSITE:PS50279
SMART:SM00131 EMBL:AE013599 GO:GO:0004867 Gene3D:4.10.410.10
SUPFAM:SSF57362 InterPro:IPR000884 Pfam:PF00090 SMART:SM00209
SUPFAM:SSF82895 PROSITE:PS50092 InterPro:IPR002861 Pfam:PF02014
PROSITE:PS51019 GeneTree:ENSGT00640000091268 InterPro:IPR009465
Pfam:PF06468 PROSITE:PS51020 EMBL:BT023853 RefSeq:NP_725128.2
UniGene:Dm.23753 SMR:Q3ZAL6 EnsemblMetazoa:FBtr0273303
GeneID:246514 KEGG:dme:Dmel_CG30203 FlyBase:FBgn0050203
eggNOG:NOG244582 OMA:KWARNTH OrthoDB:EOG43R22N GenomeRNAi:246514
NextBio:842774 Uniprot:Q3ZAL6
Length = 924
Score = 157 (60.3 bits), Expect = 9.9e-08, P = 9.9e-08
Identities = 39/105 (37%), Positives = 49/105 (46%)
Query: 305 RAAYDIP--RGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGS 362
R +YD RG Y+ + G Y ++ SYD G SYD G Y T G YD +
Sbjct: 793 RRSYDQKQTRGRPYDQTSGIAYGQTEGRSYDQKVGKSYDRTFGRSYKQTGGGSYDQPEDR 852
Query: 363 NYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGY-ET 406
+YD G +Y SYD RG YD G +YD+ G Y ET
Sbjct: 853 SYDLSTGRSYVQPEDRSYDLSRGRSYDQPVGRSYDLAGGRSYGET 897
Score = 153 (58.9 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 46/148 (31%), Positives = 60/148 (40%)
Query: 317 EASKGPGYDASKAPSYDP--TKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDI 374
E S+ D SYD T+G YD G Y T+G YD + G +YD G +Y
Sbjct: 781 ERSENDAMDLYGRRSYDQKQTRGRPYDQTSGIAYGQTEGRSYDQKVGKSYDRTFGRSYKQ 840
Query: 375 HRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGP 434
G SYD YD+ G +Y Y+ R YD G Y+ SY
Sbjct: 841 TGGGSYDQPEDRSYDLSTGRSYVQPEDRSYDLSRGRSYDQPVGRSYDLAGGRSYGETSEA 900
Query: 435 GYDLQRGQGYDMRRAPSYDPSRGTGFDG 462
G D+ G+ R+ YD SR + G
Sbjct: 901 G-DI--GEPMSQTRS-RYDTSRRGRYGG 924
Score = 134 (52.2 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 36/111 (32%), Positives = 45/111 (40%)
Query: 356 YDAQ--KGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYD 413
YD + +G YD G Y G SYD + G YD G +Y G Y+ YD
Sbjct: 796 YDQKQTRGRPYDQTSGIAYGQTEGRSYDQKVGKSYDRTFGRSYKQTGGGSYDQPEDRSYD 855
Query: 414 VQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAP 464
+ G Y SY RG YD G+ YD+ SY + G G P
Sbjct: 856 LSTGRSYVQPEDRSYDLSRGRSYDQPVGRSYDLAGGRSYGETSEAGDIGEP 906
Score = 123 (48.4 bits), Expect = 0.00049, P = 0.00049
Identities = 38/119 (31%), Positives = 52/119 (43%)
Query: 290 TSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYD 349
TS AY T+ +YD G Y+ + G Y + SYD + SYD + G Y
Sbjct: 809 TSGIAYGQTEG-----RSYDQKVGKSYDRTFGRSYKQTGGGSYDQPEDRSYDLSTGRSYV 863
Query: 350 PTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDP--QRG-LGYDM-QRGPNYDMQRGPGY 404
+ YD +G +YD G +YD+ G SY + G +G M Q YD R Y
Sbjct: 864 QPEDRSYDLSRGRSYDQPVGRSYDLAGGRSYGETSEAGDIGEPMSQTRSRYDTSRRGRY 922
>WB|WBGene00005015 [details] [associations]
symbol:spt-5 species:6239 "Caenorhabditis elegans"
[GO:0032968 "positive regulation of transcription elongation from
RNA polymerase II promoter" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR006645 InterPro:IPR017071
InterPro:IPR024945 PIRSF:PIRSF036945 SMART:SM00738 SMART:SM01104
Pfam:PF00467 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0006351 GO:GO:0040035 GO:GO:0032968 EMBL:Z68752
InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739
eggNOG:COG0250 GO:GO:0032044 HOGENOM:HOG000038564 KO:K15172
InterPro:IPR022581 InterPro:IPR005100 PANTHER:PTHR11125:SF7
Pfam:PF03439 Pfam:PF11942 EMBL:Z68316 PIR:T23467 RefSeq:NP_502283.1
ProteinModelPortal:Q21338 SMR:Q21338 STRING:Q21338 PaxDb:Q21338
EnsemblMetazoa:K08E4.1 GeneID:178143 KEGG:cel:CELE_K08E4.1
UCSC:K08E4.1 CTD:178143 WormBase:K08E4.1
GeneTree:ENSGT00440000037640 InParanoid:Q21338 OMA:PAYGNES
NextBio:899898 Uniprot:Q21338
Length = 1208
Score = 158 (60.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 60/182 (32%), Positives = 76/182 (41%)
Query: 290 TSTSAYAA-TQSGTPMRAAYDIPRGPGY-EASKGPGYDASKAPSYDPTKGPSYDPAKGPG 347
+ T Y A T M AYD R P Y E + P Y SK P+Y S G
Sbjct: 813 SKTPMYGAQTPMYGSMTPAYDGGRTPAYGEGGRTPAY-GSKTPAYGDLDEHSSSRTPAYG 871
Query: 348 YDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQ-RGPGYET 406
D ++ P Y GS D R P Y G P G D R P YD R PGYE+
Sbjct: 872 NDSSRTPAY----GSA-DGARTPAYGSTEG-GRTPAYG-SMDNSRTPAYDDSGRTPGYES 924
Query: 407 Q--RVPGYDVQ-RGPVY-EAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDG 462
R P YD + P Y E++ + R P Y+ YD+ +P+Y+P +D
Sbjct: 925 MPSRTPNYDSSSKTPAYPESEHSA-----RTPAYN----NDYDIPLSPAYEPDAPEAYDN 975
Query: 463 AP 464
AP
Sbjct: 976 AP 977
Score = 146 (56.5 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 74/256 (28%), Positives = 96/256 (37%)
Query: 234 RRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTS 293
R A GS A G+ + +S R AY + +G A T G+ T
Sbjct: 845 RTPAYGSKTPAYGDLDEHSSSRTP---AYGNDSSRTPAYGSADGARTPAY-GSTEGGRTP 900
Query: 294 AYAATQ-SGTPMRAAYDIP-RGPGYEA--SKGPGYDAS-KAPSYDPTKGPSYDPAKGPGY 348
AY + S TP AYD R PGYE+ S+ P YD+S K P+Y ++ + PA Y
Sbjct: 901 AYGSMDNSRTP---AYDDSGRTPGYESMPSRTPNYDSSSKTPAYPESEHSARTPAYNNDY 957
Query: 349 DPTKGPGYDAQKGSNYD---------AQRGPNYDIHRG--PSYDPQRGLGYDMQRG---- 393
D P Y+ YD R P YD + P+Y+P + G
Sbjct: 958 DIPLSPAYEPDAPEAYDNAPARTPAFVSRTPGYDTYENSSPTYEPDAATKVEEDIGDTSS 1017
Query: 394 PNYDMQRGPGYETQRVPGYDVQRG-P-VYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPS 451
P YD P PG + P Y P + PG G YD APS
Sbjct: 1018 PTYDSP--PHSYVVPTPGAMLNPATPGAYHVD-TPGFAAPMTPG----SGGAYDQYVAPS 1070
Query: 452 ----YDPSRGTGFDGA 463
YD + DGA
Sbjct: 1071 PFAGYDSNNYNNADGA 1086
>UNIPROTKB|Q21338 [details] [associations]
symbol:spt-5 "Transcription elongation factor SPT5"
species:6239 "Caenorhabditis elegans" [GO:0032044 "DSIF complex"
evidence=ISS] InterPro:IPR006645 InterPro:IPR017071
InterPro:IPR024945 PIRSF:PIRSF036945 SMART:SM00738 SMART:SM01104
Pfam:PF00467 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0006351 GO:GO:0040035 GO:GO:0032968 EMBL:Z68752
InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739
eggNOG:COG0250 GO:GO:0032044 HOGENOM:HOG000038564 KO:K15172
InterPro:IPR022581 InterPro:IPR005100 PANTHER:PTHR11125:SF7
Pfam:PF03439 Pfam:PF11942 EMBL:Z68316 PIR:T23467 RefSeq:NP_502283.1
ProteinModelPortal:Q21338 SMR:Q21338 STRING:Q21338 PaxDb:Q21338
EnsemblMetazoa:K08E4.1 GeneID:178143 KEGG:cel:CELE_K08E4.1
UCSC:K08E4.1 CTD:178143 WormBase:K08E4.1
GeneTree:ENSGT00440000037640 InParanoid:Q21338 OMA:PAYGNES
NextBio:899898 Uniprot:Q21338
Length = 1208
Score = 158 (60.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 60/182 (32%), Positives = 76/182 (41%)
Query: 290 TSTSAYAA-TQSGTPMRAAYDIPRGPGY-EASKGPGYDASKAPSYDPTKGPSYDPAKGPG 347
+ T Y A T M AYD R P Y E + P Y SK P+Y S G
Sbjct: 813 SKTPMYGAQTPMYGSMTPAYDGGRTPAYGEGGRTPAY-GSKTPAYGDLDEHSSSRTPAYG 871
Query: 348 YDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQ-RGPGYET 406
D ++ P Y GS D R P Y G P G D R P YD R PGYE+
Sbjct: 872 NDSSRTPAY----GSA-DGARTPAYGSTEG-GRTPAYG-SMDNSRTPAYDDSGRTPGYES 924
Query: 407 Q--RVPGYDVQ-RGPVY-EAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDG 462
R P YD + P Y E++ + R P Y+ YD+ +P+Y+P +D
Sbjct: 925 MPSRTPNYDSSSKTPAYPESEHSA-----RTPAYN----NDYDIPLSPAYEPDAPEAYDN 975
Query: 463 AP 464
AP
Sbjct: 976 AP 977
Score = 146 (56.5 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 74/256 (28%), Positives = 96/256 (37%)
Query: 234 RRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTS 293
R A GS A G+ + +S R AY + +G A T G+ T
Sbjct: 845 RTPAYGSKTPAYGDLDEHSSSRTP---AYGNDSSRTPAYGSADGARTPAY-GSTEGGRTP 900
Query: 294 AYAATQ-SGTPMRAAYDIP-RGPGYEA--SKGPGYDAS-KAPSYDPTKGPSYDPAKGPGY 348
AY + S TP AYD R PGYE+ S+ P YD+S K P+Y ++ + PA Y
Sbjct: 901 AYGSMDNSRTP---AYDDSGRTPGYESMPSRTPNYDSSSKTPAYPESEHSARTPAYNNDY 957
Query: 349 DPTKGPGYDAQKGSNYD---------AQRGPNYDIHRG--PSYDPQRGLGYDMQRG---- 393
D P Y+ YD R P YD + P+Y+P + G
Sbjct: 958 DIPLSPAYEPDAPEAYDNAPARTPAFVSRTPGYDTYENSSPTYEPDAATKVEEDIGDTSS 1017
Query: 394 PNYDMQRGPGYETQRVPGYDVQRG-P-VYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPS 451
P YD P PG + P Y P + PG G YD APS
Sbjct: 1018 PTYDSP--PHSYVVPTPGAMLNPATPGAYHVD-TPGFAAPMTPG----SGGAYDQYVAPS 1070
Query: 452 ----YDPSRGTGFDGA 463
YD + DGA
Sbjct: 1071 PFAGYDSNNYNNADGA 1086
>WB|WBGene00002280 [details] [associations]
symbol:let-2 species:6239 "Caenorhabditis elegans"
[GO:0005201 "extracellular matrix structural constituent"
evidence=IEA] [GO:0005581 "collagen" evidence=IEA] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040039
"inductive cell migration" evidence=IMP] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IMP]
[GO:0005604 "basement membrane" evidence=IDA] [GO:0005198
"structural molecule activity" evidence=IDA] InterPro:IPR001442
Pfam:PF01413 PROSITE:PS51403 SMART:SM00111 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 InterPro:IPR016187 SUPFAM:SSF56436
GO:GO:0040018 GO:GO:0000003 GO:GO:0040039 InterPro:IPR008160
Pfam:PF01391 eggNOG:NOG12793 GO:GO:0030020 HOGENOM:HOG000085652
GO:GO:0005587 Gene3D:2.170.240.10 KO:K06237 EMBL:Z22964 EMBL:U22327
EMBL:FO081065 EMBL:J05066 PIR:A34476 PIR:T29350 PIR:T29351
RefSeq:NP_510663.1 RefSeq:NP_510664.1 ProteinModelPortal:P17140
SMR:P17140 STRING:P17140 PaxDb:P17140 PRIDE:P17140 GeneID:181708
KEGG:cel:CELE_F01G12.5 UCSC:F01G12.5b.1 CTD:181708
WormBase:F01G12.5a WormBase:F01G12.5b InParanoid:P17140
NextBio:915032 GO:GO:0016043 Uniprot:P17140
Length = 1758
Score = 159 (61.0 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 83/266 (31%), Positives = 96/266 (36%)
Query: 230 PNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQG-HGPPPSATTAGVVGAGP 288
P + + + Y G G N P G + DG P G G P + G G P
Sbjct: 330 PGLPGQKGEAGYPGRDGPKGNSGPPGPPGGGTFNDGAPGPPGLPGRPGNPGPPGTDGY-P 388
Query: 289 NTSTSAYAATQSGTPMRAAYDIPRG-PGYEASKGPGYDASKAPSYDPTKG-PSYDPAKG- 345
A +G P Y G PG + KG G AP G P KG
Sbjct: 389 GAPGPAGPIGNTGGPGLPGYPGNEGLPGPKGDKGDG-GIPGAPGVSGPSGIPGLPGPKGE 447
Query: 346 PGYDPTKG------PGYDAQKG-SNYDAQRGPN-YDIHRGPSYDPQRGL-GYDMQRG--- 393
PGY T G PG D + G ++G N RGP D GL G QRG
Sbjct: 448 PGYRGTPGQSIPGLPGKDGKPGLDGAPGRKGENGLPGVRGPPGDSLNGLPGAPGQRGAPG 507
Query: 394 PN-YDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRG-PGYDLQRGQGYDMRRAPS 451
PN YD + G PG RG A AP ++G PGY Q G D R P
Sbjct: 508 PNGYDGRDGVN-GLPGAPGTKGDRGGTCSAC-APGTKGEKGLPGYSGQPGPQGD-RGLPG 564
Query: 452 YD-PSRGTGFDGAPRGAAPHGQVPPP 476
P G DG P A G PP
Sbjct: 565 MPGPVGDAGDDGLPGPAGRPGSPGPP 590
>UNIPROTKB|P17140 [details] [associations]
symbol:let-2 "Collagen alpha-2(IV) chain" species:6239
"Caenorhabditis elegans" [GO:0016043 "cellular component
organization" evidence=NAS] [GO:0030020 "extracellular matrix
structural constituent conferring tensile strength" evidence=IMP]
[GO:0005587 "collagen type IV" evidence=IMP] InterPro:IPR001442
Pfam:PF01413 PROSITE:PS51403 SMART:SM00111 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 InterPro:IPR016187 SUPFAM:SSF56436
GO:GO:0040018 GO:GO:0000003 GO:GO:0040039 InterPro:IPR008160
Pfam:PF01391 eggNOG:NOG12793 GO:GO:0030020 HOGENOM:HOG000085652
GO:GO:0005587 Gene3D:2.170.240.10 KO:K06237 EMBL:Z22964 EMBL:U22327
EMBL:FO081065 EMBL:J05066 PIR:A34476 PIR:T29350 PIR:T29351
RefSeq:NP_510663.1 RefSeq:NP_510664.1 ProteinModelPortal:P17140
SMR:P17140 STRING:P17140 PaxDb:P17140 PRIDE:P17140 GeneID:181708
KEGG:cel:CELE_F01G12.5 UCSC:F01G12.5b.1 CTD:181708
WormBase:F01G12.5a WormBase:F01G12.5b InParanoid:P17140
NextBio:915032 GO:GO:0016043 Uniprot:P17140
Length = 1758
Score = 159 (61.0 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 83/266 (31%), Positives = 96/266 (36%)
Query: 230 PNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQG-HGPPPSATTAGVVGAGP 288
P + + + Y G G N P G + DG P G G P + G G P
Sbjct: 330 PGLPGQKGEAGYPGRDGPKGNSGPPGPPGGGTFNDGAPGPPGLPGRPGNPGPPGTDGY-P 388
Query: 289 NTSTSAYAATQSGTPMRAAYDIPRG-PGYEASKGPGYDASKAPSYDPTKG-PSYDPAKG- 345
A +G P Y G PG + KG G AP G P KG
Sbjct: 389 GAPGPAGPIGNTGGPGLPGYPGNEGLPGPKGDKGDG-GIPGAPGVSGPSGIPGLPGPKGE 447
Query: 346 PGYDPTKG------PGYDAQKG-SNYDAQRGPN-YDIHRGPSYDPQRGL-GYDMQRG--- 393
PGY T G PG D + G ++G N RGP D GL G QRG
Sbjct: 448 PGYRGTPGQSIPGLPGKDGKPGLDGAPGRKGENGLPGVRGPPGDSLNGLPGAPGQRGAPG 507
Query: 394 PN-YDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRG-PGYDLQRGQGYDMRRAPS 451
PN YD + G PG RG A AP ++G PGY Q G D R P
Sbjct: 508 PNGYDGRDGVN-GLPGAPGTKGDRGGTCSAC-APGTKGEKGLPGYSGQPGPQGD-RGLPG 564
Query: 452 YD-PSRGTGFDGAPRGAAPHGQVPPP 476
P G DG P A G PP
Sbjct: 565 MPGPVGDAGDDGLPGPAGRPGSPGPP 590
>MGI|MGI:1330280 [details] [associations]
symbol:Krtap6-2 "keratin associated protein 6-2"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005882 "intermediate filament" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] MGI:MGI:1330280 GO:GO:0005882
CTD:337967 EMBL:D89902 IPI:IPI00116464 RefSeq:NP_034803.2
UniGene:Mm.3524 PRIDE:O08884 DNASU:16701 GeneID:16701
KEGG:mmu:16701 UCSC:uc007zvp.1 NextBio:290464 Genevestigator:O08884
Uniprot:O08884
Length = 159
Score = 128 (50.1 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 38/124 (30%), Positives = 40/124 (32%)
Query: 313 GPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNY 372
G GY + G GY Y G Y G GY G GY GS Y G Y
Sbjct: 13 GCGYGSGYGSGYGCGSGSGYGCGYGSGYGCGYGSGYGCGSGSGYGCGYGSGYGCGYGSGY 72
Query: 373 DIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQR 432
G Y G GY G Y G GY GY G Y + Y
Sbjct: 73 GCGYGSGYGCGYGSGYGCGYGSGYGCGYGSGYGCGYGSGYGCGYGSGYGSGYGSGYGSGC 132
Query: 433 GPGY 436
G GY
Sbjct: 133 GCGY 136
Score = 126 (49.4 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 39/130 (30%), Positives = 40/130 (30%)
Query: 315 GYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDI 374
G G GY + Y G Y G GY G GY GS Y G Y
Sbjct: 7 GNSCGYGCGYGSGYGSGYGCGSGSGYGCGYGSGYGCGYGSGYGCGSGSGYGCGYGSGYGC 66
Query: 375 HRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGP 434
G Y G GY G Y G GY GY G Y Y G
Sbjct: 67 GYGSGYGCGYGSGYGCGYGSGYGCGYGSGYGCGYGSGYGCGYGSGYGCGYGSGYGSGYGS 126
Query: 435 GYDLQRGQGY 444
GY G GY
Sbjct: 127 GYGSGCGCGY 136
Score = 125 (49.1 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 40/136 (29%), Positives = 42/136 (30%)
Query: 337 GPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNY 396
G Y G GY G GY GS Y G Y G Y G GY G Y
Sbjct: 13 GCGYGSGYGSGYGCGSGSGYGCGYGSGYGCGYGSGYGCGSGSGYGCGYGSGYGCGYGSGY 72
Query: 397 DMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSR 456
G GY GY G Y Y G GY G GY Y
Sbjct: 73 GCGYGSGYGCGYGSGYGCGYGSGYGCGYGSGYGCGYGSGYGCGYGSGYGSGYGSGYGSGC 132
Query: 457 GTGFDGAPR-GAAPHG 471
G G+ R G +G
Sbjct: 133 GCGYGSYYRSGCCGYG 148
Score = 124 (48.7 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 34/112 (30%), Positives = 37/112 (33%)
Query: 301 GTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQK 360
G+ + Y G GY G GY Y G Y G GY G GY
Sbjct: 17 GSGYGSGYGCGSGSGYGCGYGSGYGCGYGSGYGCGSGSGYGCGYGSGYGCGYGSGYGCGY 76
Query: 361 GSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGY 412
GS Y G Y G Y G GY G Y G GY + GY
Sbjct: 77 GSGYGCGYGSGYGCGYGSGYGCGYGSGYGCGYGSGYGCGYGSGYGSGYGSGY 128
Score = 118 (46.6 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 33/107 (30%), Positives = 35/107 (32%)
Query: 306 AAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYD 365
+ Y G GY G GY Y G Y G GY G GY GS Y
Sbjct: 30 SGYGCGYGSGYGCGYGSGYGCGSGSGYGCGYGSGYGCGYGSGYGCGYGSGYGCGYGSGYG 89
Query: 366 AQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGY 412
G Y G Y G GY G Y G GY + GY
Sbjct: 90 CGYGSGYGCGYGSGYGCGYGSGYGCGYGSGYGSGYGSGYGSGCGCGY 136
Score = 118 (46.6 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 34/120 (28%), Positives = 39/120 (32%)
Query: 285 GAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAK 344
G+G + + + G + Y G GY G GY Y G Y
Sbjct: 17 GSGYGSGYGCGSGSGYGCGYGSGYGCGYGSGYGCGSGSGYGCGYGSGYGCGYGSGYGCGY 76
Query: 345 GPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGY 404
G GY G GY GS Y G Y G Y G GY G Y G GY
Sbjct: 77 GSGYGCGYGSGYGCGYGSGYGCGYGSGYGCGYGSGYGCGYGSGYGSGYGSGYGSGCGCGY 136
Score = 111 (44.1 bits), Expect = 0.00010, P = 0.00010
Identities = 35/127 (27%), Positives = 40/127 (31%)
Query: 262 YEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKG 321
Y GYG G+G + G G + + G + Y G GY G
Sbjct: 12 YGCGYG--SGYGSGYGCGSGSGYGCGYGSGYGCGYGSGYGCGSGSGYGCGYGSGYGCGYG 69
Query: 322 PGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYD 381
GY Y G Y G GY G GY GS Y G Y G Y
Sbjct: 70 SGYGCGYGSGYGCGYGSGYGCGYGSGYGCGYGSGYGCGYGSGYGCGYGSGYGSGYGSGYG 129
Query: 382 PQRGLGY 388
G GY
Sbjct: 130 SGCGCGY 136
>WB|WBGene00000123 [details] [associations]
symbol:ama-1 species:6239 "Caenorhabditis elegans"
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA;IMP] [GO:0009792 "embryo development ending in birth
or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0010458 "exit from mitosis" evidence=IMP]
[GO:0008356 "asymmetric cell division" evidence=IMP] [GO:0032502
"developmental process" evidence=IMP] [GO:0006479 "protein
methylation" evidence=IMP] [GO:0007369 "gastrulation" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0001055 "RNA polymerase II
activity" evidence=IMP] [GO:0042789 "mRNA transcription from RNA
polymerase II promoter" evidence=IMP] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 GO:GO:0005634
GO:GO:0009792 GO:GO:0040010 GO:GO:0007052 GO:GO:0010458
GO:GO:0046872 GO:GO:0003677 GO:GO:0000003 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0006479 GO:GO:0008356 GO:GO:0007369
GO:GO:0042789 EMBL:FO081153 eggNOG:COG0086 GO:GO:0005665
EMBL:M29235 PIR:A34092 PIR:T29959 RefSeq:NP_500523.4 IntAct:P16356
STRING:P16356 PaxDb:P16356 EnsemblMetazoa:F36A4.7.1
EnsemblMetazoa:F36A4.7.2 GeneID:177190 KEGG:cel:CELE_F36A4.7
UCSC:F36A4.7 CTD:247749 WormBase:F36A4.7
GeneTree:ENSGT00700000104490 HOGENOM:HOG000222975 InParanoid:P16356
OMA:KVLPWST NextBio:895720 GO:GO:0001055 Uniprot:P16356
Length = 1856
Score = 157 (60.3 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 68/254 (26%), Positives = 93/254 (36%)
Query: 239 GSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAAT 298
G GA + T G G + + +G P G P A + G S Y+ +
Sbjct: 1527 GMSPGAGFSPAGNTDG---GASPFNEGGWSPASPGDPLGALSPRTPSYG-GMSPGVYSPS 1582
Query: 299 QSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDA 358
M + + P P Y + + +PSY PT PSY P P Y PT P Y
Sbjct: 1583 SPQFSMTSPHYSPTSPSYSPTSPAAGQSPVSPSYSPTS-PSYSPTS-PSYSPTS-PSYSP 1639
Query: 359 QKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRGP 418
S Y + P+Y PSY P Y P+Y P Y P Y P
Sbjct: 1640 TSPS-Y-SPTSPSYS-PTSPSYSPSSP-SYSPS-SPSYSPS-SPRYSPTS-PTYS-PTSP 1691
Query: 419 VYEAQRAPSYIPQRGPGYD-----LQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQV 473
Y + +P+Y P P Y + G GY +P Y PS T +P + Q
Sbjct: 1692 TY-SPTSPTYSPT-SPTYSPTSPSYESGGGYSPS-SPKYSPSSPTYSPTSPSYSPTSPQY 1748
Query: 474 PPPLNNVPYGSATP 487
P + Y ++P
Sbjct: 1749 SP--TSPQYSPSSP 1760
Score = 154 (59.3 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 65/219 (29%), Positives = 87/219 (39%)
Query: 275 PPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDP 334
P + T+ G P S S + S +P +Y P P Y + P Y + +PSY P
Sbjct: 1598 PSYSPTSPAAGQSP-VSPSYSPTSPSYSPTSPSYS-PTSPSYSPTS-PSYSPT-SPSYSP 1653
Query: 335 TKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGP 394
T PSY P+ P Y P+ P Y + Y + P Y P+Y P Y P
Sbjct: 1654 TS-PSYSPSS-PSYSPSS-PSY-SPSSPRY-SPTSPTYS-PTSPTYSPTSPT-YS-PTSP 1705
Query: 395 NYD-----MQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRA 449
Y + G GY P Y P Y + +PSY P P Y Q Y +
Sbjct: 1706 TYSPTSPSYESGGGYSPSS-PKYSPS-SPTY-SPTSPSYSPT-SPQYSPTSPQ-YSPS-S 1759
Query: 450 PSYDPSRGTGFDGAPRG-AAPHGQVPPPLNNVPYGSATP 487
P+Y PS T +PRG ++P P + S TP
Sbjct: 1760 PTYTPSSPTYNPTSPRGFSSPQYSPTSPTYSPTSPSYTP 1798
>UNIPROTKB|P16356 [details] [associations]
symbol:ama-1 "DNA-directed RNA polymerase II subunit RPB1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0007052 GO:GO:0010458 GO:GO:0046872
GO:GO:0003677 GO:GO:0000003 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0006479 GO:GO:0008356 GO:GO:0007369 GO:GO:0042789
EMBL:FO081153 eggNOG:COG0086 GO:GO:0005665 EMBL:M29235 PIR:A34092
PIR:T29959 RefSeq:NP_500523.4 IntAct:P16356 STRING:P16356
PaxDb:P16356 EnsemblMetazoa:F36A4.7.1 EnsemblMetazoa:F36A4.7.2
GeneID:177190 KEGG:cel:CELE_F36A4.7 UCSC:F36A4.7 CTD:247749
WormBase:F36A4.7 GeneTree:ENSGT00700000104490 HOGENOM:HOG000222975
InParanoid:P16356 OMA:KVLPWST NextBio:895720 GO:GO:0001055
Uniprot:P16356
Length = 1856
Score = 157 (60.3 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 68/254 (26%), Positives = 93/254 (36%)
Query: 239 GSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAAT 298
G GA + T G G + + +G P G P A + G S Y+ +
Sbjct: 1527 GMSPGAGFSPAGNTDG---GASPFNEGGWSPASPGDPLGALSPRTPSYG-GMSPGVYSPS 1582
Query: 299 QSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDA 358
M + + P P Y + + +PSY PT PSY P P Y PT P Y
Sbjct: 1583 SPQFSMTSPHYSPTSPSYSPTSPAAGQSPVSPSYSPTS-PSYSPTS-PSYSPTS-PSYSP 1639
Query: 359 QKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRGP 418
S Y + P+Y PSY P Y P+Y P Y P Y P
Sbjct: 1640 TSPS-Y-SPTSPSYS-PTSPSYSPSSP-SYSPS-SPSYSPS-SPRYSPTS-PTYS-PTSP 1691
Query: 419 VYEAQRAPSYIPQRGPGYD-----LQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQV 473
Y + +P+Y P P Y + G GY +P Y PS T +P + Q
Sbjct: 1692 TY-SPTSPTYSPT-SPTYSPTSPSYESGGGYSPS-SPKYSPSSPTYSPTSPSYSPTSPQY 1748
Query: 474 PPPLNNVPYGSATP 487
P + Y ++P
Sbjct: 1749 SP--TSPQYSPSSP 1760
Score = 154 (59.3 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 65/219 (29%), Positives = 87/219 (39%)
Query: 275 PPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDP 334
P + T+ G P S S + S +P +Y P P Y + P Y + +PSY P
Sbjct: 1598 PSYSPTSPAAGQSP-VSPSYSPTSPSYSPTSPSYS-PTSPSYSPTS-PSYSPT-SPSYSP 1653
Query: 335 TKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGP 394
T PSY P+ P Y P+ P Y + Y + P Y P+Y P Y P
Sbjct: 1654 TS-PSYSPSS-PSYSPSS-PSY-SPSSPRY-SPTSPTYS-PTSPTYSPTSPT-YS-PTSP 1705
Query: 395 NYD-----MQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRA 449
Y + G GY P Y P Y + +PSY P P Y Q Y +
Sbjct: 1706 TYSPTSPSYESGGGYSPSS-PKYSPS-SPTY-SPTSPSYSPT-SPQYSPTSPQ-YSPS-S 1759
Query: 450 PSYDPSRGTGFDGAPRG-AAPHGQVPPPLNNVPYGSATP 487
P+Y PS T +PRG ++P P + S TP
Sbjct: 1760 PTYTPSSPTYNPTSPRGFSSPQYSPTSPTYSPTSPSYTP 1798
>WB|WBGene00001215 [details] [associations]
symbol:ego-2 species:6239 "Caenorhabditis elegans"
[GO:0040002 "collagen and cuticulin-based cuticle development"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0045747 "positive regulation of Notch signaling pathway"
evidence=IGI] InterPro:IPR025304 Pfam:PF13949 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0045747
GO:GO:0040035 Gene3D:1.25.40.280 InterPro:IPR004328 Pfam:PF03097
SMART:SM01041 PROSITE:PS51180 GO:GO:0040002 EMBL:AL117201
UniGene:Cel.16377 GeneID:190251 KEGG:cel:CELE_Y53H1C.2 CTD:190251
RefSeq:NP_001251634.1 ProteinModelPortal:H8ESG1 WormBase:Y53H1C.2c
Uniprot:H8ESG1
Length = 1494
Score = 136 (52.9 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 79/280 (28%), Positives = 107/280 (38%)
Query: 240 SYGGATGNSENETSGRPVGQNAYEDGYGVPQG-----HGPPPSATTAGVVGAGPNTSTSA 294
SYG T + G G + Y++G P G GPP + A A P TS
Sbjct: 1050 SYGAPT--PPQASYGPAPGAHGYQNGAQGPPGAEVGAQGPPGAHFGAHGASAPPPTS--- 1104
Query: 295 YAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGP-GYDP--- 350
Y A P +A+Y PG + G ++A A + PT + P +GP G P
Sbjct: 1105 YGAPTPQRPPQASYGA--APGAQGPPGGQFEAHGAAALPPTSHGAPTP-QGPFGAAPGAQ 1161
Query: 351 --TKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQR 408
+GP Y Q+G+ Y+AQ+ P I P PQ + Q G PG +
Sbjct: 1162 FGAQGP-Y-GQQGARYEAQKSPGAAIFGAPGAPPQHQGSFGAQFGVPPPQNSAPGAQFGA 1219
Query: 409 VPGYDVQRGPVYEAQRAPSY-IPQRGPGYDL-QRG-QGYDMRRAP---SYD-----P-SR 456
P P Q PSY P P + Q QG + P S+ P +R
Sbjct: 1220 KPEAS-SHAPTPPPQPHPSYQAPAPPPALSVFQHSPQGAPITAPPPASSHHEHIAAPQAR 1278
Query: 457 GTGFDGAPRG--AAPHG-QVPPPLNNVPYGSATPPARSGS 493
T GAP A P + P N P A P A++ +
Sbjct: 1279 FTPTPGAPSPWHATPAELKFQTPWNTTPQYHAPPGAQAAA 1318
Score = 126 (49.4 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 70/267 (26%), Positives = 94/267 (35%)
Query: 235 RAADGSYGGATGNSENETSGRPVG-QNAYEDGYGVPQGHGPPPS---ATTAGVVGAGPNT 290
+ A G++ GA G G G Q A +G GPPP+ A T GP
Sbjct: 1011 QGAQGAHFGAQG-----AQGAHFGAQGAQGTQFGAQGAQGPPPASYGAPTPPQASYGPAP 1065
Query: 291 STSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDP 350
Y G P ++ G + G + A A + PT + P + P
Sbjct: 1066 GAHGYQNGAQGPP---GAEV----GAQGPPGAHFGAHGASAPPPTSYGAPTPQRPPQASY 1118
Query: 351 TKGPGYDAQKGSNYDAQRGPNYD--IHRGPSYDPQRGLGYDMQ---RGPNYDMQRGPGYE 405
PG G ++A H P+ G Q +GP Y Q+G YE
Sbjct: 1119 GAAPGAQGPPGGQFEAHGAAALPPTSHGAPTPQGPFGAAPGAQFGAQGP-YG-QQGARYE 1176
Query: 406 TQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPR 465
Q+ PG ++ A AP PQ + Q G AP G F P
Sbjct: 1177 AQKSPG-----AAIFGAPGAP---PQHQGSFGAQFGVPPPQNSAP------GAQFGAKPE 1222
Query: 466 GAAPHGQVPPPLNNVPYGS-ATPPARS 491
A+ H PPP + Y + A PPA S
Sbjct: 1223 -ASSHAPTPPPQPHPSYQAPAPPPALS 1248
Score = 70 (29.7 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 30/122 (24%), Positives = 58/122 (47%)
Query: 57 SQHVEMQKLATENQRLA-ATHGTLRQELAAAQHEL--QIL----HGQIGGMKSERELQMR 109
++H+E K + A A H Q L E+ +I+ G++ S ELQ+R
Sbjct: 520 AEHLEQAKAHNVSLNKAIAQHSANLQLLTLPCREMWMKIVPPEQQGEMRNGSSPEELQVR 579
Query: 110 NLTEKIAKMEAEL-KTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ 168
+ EK+ +M+A+ K E + + K+ + L+ E ++ + +L + HT++Q
Sbjct: 580 KMIEKVMEMQAQRRKLVEQFEADL-KADNISNKLMGTNERGAEEI--MKSELTK-HTNIQ 635
Query: 169 QI 170
Q+
Sbjct: 636 QL 637
>ZFIN|ZDB-GENE-030131-5725 [details] [associations]
symbol:arid1ab "AT rich interactive domain 1Ab
(SWI-like)" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011 SMART:SM00501
ZFIN:ZDB-GENE-030131-5725 GO:GO:0003677 GO:GO:0005622
Gene3D:1.10.150.60 InterPro:IPR021906 Pfam:PF12031 SUPFAM:SSF46774
GeneTree:ENSGT00550000074575 EMBL:CABZ01050711 EMBL:CT027837
IPI:IPI00485842 Ensembl:ENSDART00000084272 Bgee:F1RE50
Uniprot:F1RE50
Length = 2135
Score = 157 (60.3 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 78/257 (30%), Positives = 104/257 (40%)
Query: 239 GSYGGATGNSENETSGRPVGQNAYEDGYGVP-QGHGPP-PSATTAGVVGAGPNTSTSAYA 296
G + GA GN ++ G P + G P QG+GPP P G+ G TS + +
Sbjct: 312 GQHYGA-GNPYSQQQGPPPSS---QQGPPYPGQGYGPPGPQRYPMGMQG---RTSGNL-S 363
Query: 297 ATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGP---SY--DPAKGPGYDP- 350
Q G M Y GPG GY + PS P GP SY P+ GPG P
Sbjct: 364 GIQYGQQM--GYG-QHGPGGYGQNQAGYYGQQGPS--PHGGPQQSSYPQQPSTGPGSQPP 418
Query: 351 -TKGPGYD--AQKGSNYDAQRGPNYDIHRGPSYD--PQRGLG---YDMQRGPNYDMQRGP 402
++ P Q G++Y +GP+ P Y PQ G + +GP
Sbjct: 419 YSQQPSGTPHGQSGTSYGQPQGPHVPNQGQPPYSQTPQSQSGQSPFPQSQGPTQSQGPSQ 478
Query: 403 GYE-TQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSY---DPSRGT 458
G + +Q PGY P Q A Q+GP Q+ QG + PS PS+ T
Sbjct: 479 GQQGSQSQPGYT--HPPSGSGQPAQ----QQGPS---QQQQGPPQSQTPSSAPPQPSQQT 529
Query: 459 GFDGAPRGAAPHGQVPP 475
G P +P+ Q PP
Sbjct: 530 SGQGQP---SPYSQTPP 543
Score = 126 (49.4 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 80/300 (26%), Positives = 111/300 (37%)
Query: 225 ELMNAPNVDRRAAD---GSYGGATGNSENETSGRPVGQNAYEDGYGVPQ--GHGPPPSAT 279
+L+ +P+ R + YGG G ++ G + Y G+ Q H PPP +
Sbjct: 232 QLLTSPSSTRSYQNYPASEYGGQEGAAKGP--GDMGSSSQYGGGHPAWQQRSHHPPPMSP 289
Query: 280 TAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPS 339
G G T Q G Y G Y +GP + + P Y P +G
Sbjct: 290 --GNTGQANRTQPPG-PMDQVGKIRGQHYGA--GNPYSQQQGPPPSSQQGPPY-PGQG-- 341
Query: 340 YDPAKGPGYDPTKGPGYDAQK--GSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPN-- 395
Y P GP P G + G Y Q G Y H GP Q GY Q+GP+
Sbjct: 342 YGPP-GPQRYPMGMQGRTSGNLSGIQYGQQMG--YGQH-GPGGYGQNQAGYYGQQGPSPH 397
Query: 396 -------YDMQ--RGPGYE---TQRVPGYDV-QRGPVYEAQRAPSYIPQRG-PGYDLQRG 441
Y Q GPG + +Q+ G Q G Y + P ++P +G P Y Q
Sbjct: 398 GGPQQSSYPQQPSTGPGSQPPYSQQPSGTPHGQSGTSYGQPQGP-HVPNQGQPPYS-QTP 455
Query: 442 QGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRGGNP 501
Q ++P + S+G P Q P + P GS P + G Q + G P
Sbjct: 456 QSQS-GQSP-FPQSQGPTQSQGPSQGQQGSQSQPGYTHPPSGSGQPAQQQGPSQQQQGPP 513
Score = 50 (22.7 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 9/12 (75%), Positives = 9/12 (75%)
Query: 30 GMRPPMPGAFPP 41
GM P PGAFPP
Sbjct: 101 GMAPHHPGAFPP 112
>UNIPROTKB|J3KNM7 [details] [associations]
symbol:COL4A4 "Collagen alpha-4(IV) chain" species:9606
"Homo sapiens" [GO:0005201 "extracellular matrix structural
constituent" evidence=IEA] [GO:0005581 "collagen" evidence=IEA]
InterPro:IPR001442 Pfam:PF01413 PROSITE:PS51403 SMART:SM00111
EMBL:CH471063 InterPro:IPR016187 SUPFAM:SSF56436 GO:GO:0005581
InterPro:IPR008160 Pfam:PF01391 GO:GO:0005201 Gene3D:2.170.240.10
EMBL:AC079235 EMBL:AC073149 UniGene:Hs.591645 HGNC:HGNC:2206
ChiTaRS:COL4A4 ProteinModelPortal:J3KNM7 Ensembl:ENST00000329662
Uniprot:J3KNM7
Length = 1687
Score = 153 (58.9 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 81/253 (32%), Positives = 101/253 (39%)
Query: 262 YEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKG 321
Y +G P GPP G GA P S S + GTP A +IP PG+ G
Sbjct: 672 YPGRHGPPGFDGPPGPKGFPGPQGA-PGLSGSDGHKGRPGTPGTA--EIPGPPGFRGDMG 728
Query: 322 -PGYDASKAPSYDPTKGPSYDPA----KG-PGYDPTKGP-GYDAQKG-SNYDAQRGPNYD 373
PG+ K S GP P KG PG DP G G ++G S +GP D
Sbjct: 729 DPGFGGEKGSSPVGPPGPPGSPGVNGQKGIPG-DPAFGHLGPPGKRGLSGVPGIKGPRGD 787
Query: 374 IHRG-PSYDPQRGL-GYDMQRGPN-YDMQRG-PGYETQRVPGYDVQRG-PVYEAQRA-PS 427
G P + G+ G+ +GP + G PG PG+ +RG P Q P
Sbjct: 788 --PGCPGAEGPAGIPGFLGLKGPKGREGHAGFPGVPGP--PGHSCERGAPGIPGQPGLPG 843
Query: 428 YIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVP--YGSA 485
Y P PG +GQ D+ P P+ G G P HG PP L +P +G
Sbjct: 844 Y-PG-SPGAPGGKGQPGDV--GPP-GPAGMKGLPGLPGRPGAHG--PPGLPGIPGPFGDD 896
Query: 486 TPPARSGSGQPRG 498
P G PRG
Sbjct: 897 GLPGPPGPKGPRG 909
Score = 130 (50.8 bits), Expect = 0.00017, P = 0.00017
Identities = 81/260 (31%), Positives = 104/260 (40%)
Query: 263 EDGY-GVPQGHGPPPSATTAGVVGA-GPNTSTSAYAATQSGTPMRAAYDIPRGP-GYEAS 319
E G+ GVP GH P G+ G G S + + G P +D P GP G+
Sbjct: 640 ERGHPGVP-GH--PGVRGPDGLKGQKGDTISCNVTYPGRHGPP---GFDGPPGPKGFPGP 693
Query: 320 KG-PGYDASKAPSYDP-TKGPSYDPAKGPGYDPTKG-PGYDAQKGSNYDAQRGP----NY 372
+G PG S P T G + P PG+ G PG+ +KGS+ GP
Sbjct: 694 QGAPGLSGSDGHKGRPGTPGTAEIPGP-PGFRGDMGDPGFGGEKGSSPVGPPGPPGSPGV 752
Query: 373 DIHRGPSYDPQRG-LGYDMQRG----PNYDMQRG----PGYETQR-VPGYDVQRGPVYEA 422
+ +G DP G LG +RG P RG PG E +PG+ +GP
Sbjct: 753 NGQKGIPGDPAFGHLGPPGKRGLSGVPGIKGPRGDPGCPGAEGPAGIPGFLGLKGPKGRE 812
Query: 423 QRA--PSYIPQRGPGYDLQRGQ-GYDMRRA-PSYDPSRGTGFDGAPRGAAPHGQVPPPLN 478
A P +P PG+ +RG G + P Y P G GAP G G V PP
Sbjct: 813 GHAGFPG-VPGP-PGHSCERGAPGIPGQPGLPGY-P----GSPGAPGGKGQPGDVGPPGP 865
Query: 479 NVPYGSATPPARSGSGQPRG 498
G P R G+ P G
Sbjct: 866 AGMKGLPGLPGRPGAHGPPG 885
Score = 123 (48.4 bits), Expect = 0.00099, P = 0.00099
Identities = 81/280 (28%), Positives = 104/280 (37%)
Query: 243 GATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGT 302
GA+G + G PVG + G P G P G G P S+ +G
Sbjct: 1190 GASGLHDVGPPG-PVGIPGLKGERGDPGSPGISPPGPR-GKKGP-PGPPGSSGPPGPAGA 1246
Query: 303 PMRAAYDIPRGPGYEASKGP-GYDASK-AP-------SYDPTKGPSYD-----PAKGPGY 348
RA DIP PG +GP G D + AP S D +G D P PG
Sbjct: 1247 TGRAPKDIP-DPGPPGDQGPPGPDGPRGAPGPPGLPGSVDLLRGEPGDCGLPGPPGPPG- 1304
Query: 349 DPTKGPGYDAQKGSN-YDAQRGP-NYDIHRGPSYDPQRGLGYDMQRG-PNYDMQRGP-GY 404
P PGY G + D Q+GP + +GP P G ++G P ++GP G
Sbjct: 1305 -PPGPPGYKGFPGCDGKDGQKGPVGFPGPQGPHGFP----GPPGEKGLPGPPGRKGPTGL 1359
Query: 405 ETQRVPGYDVQRGP-VYEAQRAPSYI-PQRGPGYDLQRG-QGYDMRRAPSYDPSRGTGFD 461
+ P DV P + AP P+ G RG G + P D RG D
Sbjct: 1360 PGEPGPPADVDDCPRIPGLPGAPGMRGPEGAMGLPGMRGPSGPGCKGEPGLDGRRGV--D 1417
Query: 462 GAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRGGNP 501
G P P G+ + G PP G P+G P
Sbjct: 1418 GVPGSPGPPGRKGDTGEDGYPGGPGPPGPIGDPGPKGFGP 1457
>UNIPROTKB|P53420 [details] [associations]
symbol:COL4A4 "Collagen alpha-4(IV) chain" species:9606
"Homo sapiens" [GO:0005587 "collagen type IV" evidence=IDA]
[GO:0005201 "extracellular matrix structural constituent"
evidence=IMP] [GO:0032836 "glomerular basement membrane
development" evidence=IMP] [GO:0005605 "basal lamina" evidence=IDA]
[GO:0005576 "extracellular region" evidence=TAS] [GO:0005788
"endoplasmic reticulum lumen" evidence=TAS] [GO:0007411 "axon
guidance" evidence=TAS] [GO:0030198 "extracellular matrix
organization" evidence=TAS] InterPro:IPR001442 Pfam:PF01413
PROSITE:PS51403 SMART:SM00111 Reactome:REACT_118779
Reactome:REACT_111045 Reactome:REACT_111102 GO:GO:0007411
InterPro:IPR016187 SUPFAM:SSF56436 GO:GO:0005788 GO:GO:0005605
InterPro:IPR008160 Pfam:PF01391 eggNOG:NOG12793 GO:GO:0005201
HOVERGEN:HBG004933 HOGENOM:HOG000085652 GO:GO:0005587
Gene3D:2.170.240.10 KO:K06237 OrthoDB:EOG4XGZZF EMBL:AC079235
EMBL:AB008496 MIM:141200 MIM:203780 Orphanet:88919 Orphanet:97562
GO:GO:0032836 EMBL:X81053 EMBL:Y17397 EMBL:Y17398 EMBL:Y17399
EMBL:Y17400 EMBL:Y17401 EMBL:Y17402 EMBL:Y17403 EMBL:Y17404
EMBL:Y17405 EMBL:Y17406 EMBL:Y17407 EMBL:Y17408 EMBL:Y17409
EMBL:Y17410 EMBL:Y17411 EMBL:Y17412 EMBL:Y17413 EMBL:Y17427
EMBL:Y17426 EMBL:Y17414 EMBL:Y17415 EMBL:Y17416 EMBL:Y17417
EMBL:Y17418 EMBL:Y17419 EMBL:Y17420 EMBL:Y17443 EMBL:Y17442
EMBL:Y17441 EMBL:Y17440 EMBL:Y17439 EMBL:Y17438 EMBL:Y17437
EMBL:Y17436 EMBL:Y17435 EMBL:Y17434 EMBL:Y17433 EMBL:Y17432
EMBL:Y17431 EMBL:Y17430 EMBL:Y17429 EMBL:Y17428 EMBL:Y17421
EMBL:Y17422 EMBL:Y17423 EMBL:Y17424 EMBL:Y17425 EMBL:AC073149
EMBL:D17391 IPI:IPI00478572 PIR:A55360 RefSeq:NP_000083.3
UniGene:Hs.591645 ProteinModelPortal:P53420 SMR:P53420
IntAct:P53420 STRING:P53420 PhosphoSite:P53420 DMDM:259016360
PaxDb:P53420 PRIDE:P53420 Ensembl:ENST00000396625 GeneID:1286
KEGG:hsa:1286 UCSC:uc021vxr.1 CTD:1286 GeneCards:GC02M227867
H-InvDB:HIX0030014 HGNC:HGNC:2206 MIM:120131 neXtProt:NX_P53420
PharmGKB:PA26721 InParanoid:P53420 OMA:FRGDMGD ChiTaRS:COL4A4
GenomeRNAi:1286 NextBio:5201 Bgee:P53420 CleanEx:HS_COL4A4
Genevestigator:P53420 GermOnline:ENSG00000081052 Uniprot:P53420
Length = 1690
Score = 153 (58.9 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 81/253 (32%), Positives = 101/253 (39%)
Query: 262 YEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKG 321
Y +G P GPP G GA P S S + GTP A +IP PG+ G
Sbjct: 672 YPGRHGPPGFDGPPGPKGFPGPQGA-PGLSGSDGHKGRPGTPGTA--EIPGPPGFRGDMG 728
Query: 322 -PGYDASKAPSYDPTKGPSYDPA----KG-PGYDPTKGP-GYDAQKG-SNYDAQRGPNYD 373
PG+ K S GP P KG PG DP G G ++G S +GP D
Sbjct: 729 DPGFGGEKGSSPVGPPGPPGSPGVNGQKGIPG-DPAFGHLGPPGKRGLSGVPGIKGPRGD 787
Query: 374 IHRG-PSYDPQRGL-GYDMQRGPN-YDMQRG-PGYETQRVPGYDVQRG-PVYEAQRA-PS 427
G P + G+ G+ +GP + G PG PG+ +RG P Q P
Sbjct: 788 --PGCPGAEGPAGIPGFLGLKGPKGREGHAGFPGVPGP--PGHSCERGAPGIPGQPGLPG 843
Query: 428 YIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVP--YGSA 485
Y P PG +GQ D+ P P+ G G P HG PP L +P +G
Sbjct: 844 Y-PG-SPGAPGGKGQPGDV--GPP-GPAGMKGLPGLPGRPGAHG--PPGLPGIPGPFGDD 896
Query: 486 TPPARSGSGQPRG 498
P G PRG
Sbjct: 897 GLPGPPGPKGPRG 909
Score = 130 (50.8 bits), Expect = 0.00017, P = 0.00017
Identities = 81/260 (31%), Positives = 104/260 (40%)
Query: 263 EDGY-GVPQGHGPPPSATTAGVVGA-GPNTSTSAYAATQSGTPMRAAYDIPRGP-GYEAS 319
E G+ GVP GH P G+ G G S + + G P +D P GP G+
Sbjct: 640 ERGHPGVP-GH--PGVRGPDGLKGQKGDTISCNVTYPGRHGPP---GFDGPPGPKGFPGP 693
Query: 320 KG-PGYDASKAPSYDP-TKGPSYDPAKGPGYDPTKG-PGYDAQKGSNYDAQRGP----NY 372
+G PG S P T G + P PG+ G PG+ +KGS+ GP
Sbjct: 694 QGAPGLSGSDGHKGRPGTPGTAEIPGP-PGFRGDMGDPGFGGEKGSSPVGPPGPPGSPGV 752
Query: 373 DIHRGPSYDPQRG-LGYDMQRG----PNYDMQRG----PGYETQR-VPGYDVQRGPVYEA 422
+ +G DP G LG +RG P RG PG E +PG+ +GP
Sbjct: 753 NGQKGIPGDPAFGHLGPPGKRGLSGVPGIKGPRGDPGCPGAEGPAGIPGFLGLKGPKGRE 812
Query: 423 QRA--PSYIPQRGPGYDLQRGQ-GYDMRRA-PSYDPSRGTGFDGAPRGAAPHGQVPPPLN 478
A P +P PG+ +RG G + P Y P G GAP G G V PP
Sbjct: 813 GHAGFPG-VPGP-PGHSCERGAPGIPGQPGLPGY-P----GSPGAPGGKGQPGDVGPPGP 865
Query: 479 NVPYGSATPPARSGSGQPRG 498
G P R G+ P G
Sbjct: 866 AGMKGLPGLPGRPGAHGPPG 885
>WB|WBGene00004203 [details] [associations]
symbol:swsn-1 species:6239 "Caenorhabditis elegans"
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IGI;IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IGI;IMP] [GO:0009792 "embryo development ending in birth
or egg hatching" evidence=IGI;IMP] [GO:0040018 "positive regulation
of multicellular organism growth" evidence=IGI;IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0040027
"negative regulation of vulval development" evidence=IMP]
[GO:0046662 "regulation of oviposition" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0035262 "gonad
morphogenesis" evidence=IMP] InterPro:IPR001005 InterPro:IPR007526
InterPro:IPR009057 Pfam:PF00249 Pfam:PF04433 PROSITE:PS50934
SMART:SM00717 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003677
GO:GO:0040018 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0046662 GO:GO:0040035
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0040027 GO:GO:0035262
EMBL:AL110477 KO:K11649 UniGene:Cel.7072 GeneID:180324
KEGG:cel:CELE_Y113G7B.23 CTD:180324 RefSeq:NP_001256907.1
ProteinModelPortal:H8ESF3 SMR:H8ESF3 WormBase:Y113G7B.23c
Uniprot:H8ESF3
Length = 792
Score = 149 (57.5 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 85/312 (27%), Positives = 122/312 (39%)
Query: 201 HLESL-QVMEKNYITMATEVEKLRAELMNAPNVDRRAADGSYGGATGNSENETSGR-PVG 258
H + L Q+M+K ++ + +L E A ++D+ + +S +SG P G
Sbjct: 493 HFDELEQIMDKERESLEYQRHQLILE-RQAFHMDQLKYLENRAKHEAHSRMTSSGALPAG 551
Query: 259 QNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEA 318
+ G PQ P P + A P ++ AAT + P + P+ P +A
Sbjct: 552 LPPGFEVTGPPQ---PTPQVQISAQEAAIPEKMDTSEAATAARPP--STPQAPQAPPVQA 606
Query: 319 SKGP--GYDASKAP--SYDPTKGPSYDPAKGPGYDPTKGPGYDA----QKGSNYDAQRGP 370
+ P A +AP +Y GP P + Y P +G Y Q+ + AQ+
Sbjct: 607 APAPVQAPQAPQAPPQAYQGYGGPGGPPQQAYRYPPQQGQQYSPYPPPQQQQQHQAQQAQ 666
Query: 371 NYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRG-PVYEAQRAPSYI 429
+ H GP Q G Q Y PG GY Q+ P Y+AQ P
Sbjct: 667 S-QAHYGPPGGGQ-GPPPPPQGQQYYGGPPPPGQPYGPPGGYPPQQQRPPYQAQPYPG-- 722
Query: 430 PQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPA 489
P P QRG GY P P F G P P+GQ+PPP P+G P
Sbjct: 723 P---PPPQQQRGYGYP----PPPQPV----FSGHPY-QQPYGQMPPP----PHGQYQPQQ 766
Query: 490 RSGSGQ-PRGGN 500
+ G P GG+
Sbjct: 767 QQGGPMGPPGGH 778
>UNIPROTKB|D4ADB1 [details] [associations]
symbol:D4ADB1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00595 Pfam:PF00412 InterPro:IPR001478 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50106 SMART:SM00132
SMART:SM00228 GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10
SUPFAM:SSF50156 InterPro:IPR006643 SMART:SM00735 IPI:IPI00951885
PRIDE:D4ADB1 Ensembl:ENSRNOT00000043713 ArrayExpress:D4ADB1
Uniprot:D4ADB1
Length = 684
Score = 148 (57.2 bits), Expect = 6.3e-07, P = 6.3e-07
Identities = 50/182 (27%), Positives = 70/182 (38%)
Query: 252 TSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIP 311
TS P +Y +G P P P T + P+ A+ S +P A Y P
Sbjct: 331 TSPAPAAHTSYSEGPAAP---APKPRVVTTASIR--PSVYQPVPASPYSPSP-GANYS-P 383
Query: 312 RGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPN 371
P Y S P Y S AP+Y P+ P+Y P+ P Y P+ P Y+ + Y GP+
Sbjct: 384 T-P-YTPSPAPAYTPSPAPTYTPSPAPTYSPSPAPAYTPSPAPNYNPTPSAAYSG--GPS 439
Query: 372 YDIHRGP-----SYDPQRGLGYDMQRGPNYDMQRG-PGYETQRVPGYDVQRGPVYEAQRA 425
R P S+ + G + RG P Y + RG A+R
Sbjct: 440 ESASRPPWVTDDSFSQKFAPGKSTTSVSKQTLPRGAPAYNPTGPQVTPLARGTFQRAERF 499
Query: 426 PS 427
P+
Sbjct: 500 PA 501
>FB|FBgn0035872 [details] [associations]
symbol:CG7185 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0006379 "mRNA
cleavage" evidence=ISS] [GO:0005849 "mRNA cleavage factor complex"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IC] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 EMBL:AE014296
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000381
GO:GO:0006379 GO:GO:0005849 eggNOG:NOG313287 KO:K14398
GeneTree:ENSGT00690000101901 EMBL:AY058563 RefSeq:NP_648206.1
UniGene:Dm.887 ProteinModelPortal:Q9VSH4 SMR:Q9VSH4 IntAct:Q9VSH4
MINT:MINT-1562127 STRING:Q9VSH4 PaxDb:Q9VSH4
EnsemblMetazoa:FBtr0076710 GeneID:38937 KEGG:dme:Dmel_CG7185
UCSC:CG7185-RA FlyBase:FBgn0035872 InParanoid:Q9VSH4 OMA:PYERGDY
OrthoDB:EOG4S1RQ4 PhylomeDB:Q9VSH4 ChiTaRS:CG7185 GenomeRNAi:38937
NextBio:811101 Bgee:Q9VSH4 Uniprot:Q9VSH4
Length = 652
Score = 141 (54.7 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 63/199 (31%), Positives = 79/199 (39%)
Query: 311 PRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPG-YDAQKGSNYDAQRG 369
PRGP S G G + P GP P +G + PG Y Q S G
Sbjct: 197 PRGPA-PPSMGGGPMPTGHPGGPQGGGPPGHPPRG--MNSIMQPGQYRPQHMSQVPQVGG 253
Query: 370 PNYDIHR-GPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSY 428
PN R P PQ GL + Q P Y +G + QR PG + GP + P +
Sbjct: 254 PNSGPPRMQPPMHPQGGLMGNQQPPPRYPSAQGQ-WPGQR-PG-GPRPGPPNGPPQRPMF 310
Query: 429 IPQRGP-GYDLQRGQGYDMRRAPSYD--PSRGT--GFDGAPRGAAPHGQVPPPLNNVPYG 483
Q GP G ++ G D RR P + P +G G AP PHG P +N +
Sbjct: 311 --QGGPMGMPVRGPAGPDWRRPPMHGGFPPQGPPRGLPPAPGPGGPHGAPAPHVNPAFFN 368
Query: 484 SATPPARS-GSGQPRGGNP 501
PA+ G G P G P
Sbjct: 369 QPGGPAQHPGMGGPPHGAP 387
Score = 112 (44.5 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 53/171 (30%), Positives = 61/171 (35%)
Query: 334 PTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRG 393
P +GP+ P+ G G PT PG G RG N + G Y PQ G
Sbjct: 196 PPRGPA-PPSMGGGPMPTGHPGGPQGGGPPGHPPRGMNSIMQPG-QYRPQHMSQVPQVGG 253
Query: 394 PNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRG--PGYDLQRGQGYDMRRAPS 451
PN GP + P Q G + Q P Y +G PG QR G R P
Sbjct: 254 PN----SGP---PRMQPPMHPQGGLMGNQQPPPRYPSAQGQWPG---QRPGG--PRPGPP 301
Query: 452 YDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRGGNPA 502
P + F G P G G P P PP G PRG PA
Sbjct: 302 NGPPQRPMFQGGPMGMPVRGPAGPDWRRPPMHGGFPP----QGPPRGLPPA 348
Score = 52 (23.4 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 24/76 (31%), Positives = 30/76 (39%)
Query: 246 GNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMR 305
G +++E G G + Y+D G GP SA + G G G S A SG P
Sbjct: 19 GQAQDEFGGD--GVDLYDD-IG-----GPTESAASGG--GGGGTPSADGAAGPGSGEPGE 68
Query: 306 AAYDIPRGPGYEASKG 321
P G Y S G
Sbjct: 69 RNSGGPNGV-YHQSSG 83
Score = 42 (19.8 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 236 AADGSYGGATGNSENETSGRPVG 258
+ADG+ G +G SG P G
Sbjct: 54 SADGAAGPGSGEPGERNSGGPNG 76
>TAIR|locus:2012713 [details] [associations]
symbol:AT1G33680 "AT1G33680" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF13014 PROSITE:PS50084 SMART:SM00322
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0003723
eggNOG:NOG300923 KO:K13210 UniGene:At.39892 UniGene:At.71035
HOGENOM:HOG000242545 EMBL:AK229850 EMBL:AK229909 EMBL:AK230055
IPI:IPI00786006 RefSeq:NP_174629.3 ProteinModelPortal:Q0WLY0
SMR:Q0WLY0 STRING:Q0WLY0 PaxDb:Q0WLY0 PRIDE:Q0WLY0
EnsemblPlants:AT1G33680.1 GeneID:840259 KEGG:ath:AT1G33680
TAIR:At1g33680 InParanoid:Q0WLY0 OMA:PSYGSTP PhylomeDB:Q0WLY0
ProtClustDB:CLSN2690290 Genevestigator:Q0WLY0 Uniprot:Q0WLY0
Length = 763
Score = 144 (55.7 bits), Expect = 9.7e-07, Sum P(2) = 9.7e-07
Identities = 65/233 (27%), Positives = 82/233 (35%)
Query: 241 YGGATGNSENETSGRPVG-QNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQ 299
Y A G + + RP G Q + E GYG P+ PP G A P+ ++ AA+
Sbjct: 537 YPSAGGQHQMQQPSRPYGMQGSAEQGYGPPRPAAPPGDVPYQGPTPAAPSYGSTPAAASY 596
Query: 300 SGTPMRAAY-DIPRGPGYEASKGP----GYDASKAPSYDPTKGPSYDPAK-GPGYD---- 349
TP +Y P P Y ++ GY AS AP+ PSY A GY+
Sbjct: 597 GSTPAAPSYGSTPAAPSYGSNMAQQQQYGY-ASSAPTQQTY--PSYSSAAPSDGYNGTQP 653
Query: 350 PTKGPGYD---AQKGSNYDAQRG------PNYDIHRGPSYDPQRGLGYDMQRGPNYDMQR 400
P P Y+ AQ S G P PS P G Q NY
Sbjct: 654 PAVAPAYEQHGAQPASGVQQTSGGYGQVPPTGGYSSYPSTQPAYG-NTPAQSNGNY---- 708
Query: 401 GPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGP---GYDLQRGQGYDMRRAP 450
GY + P Y Y A + Q P GY+ Q AP
Sbjct: 709 --GYIGSQYPSYGGGNASAYAAPTGQTAYSQTAPPQAGYEQSATQSAGYAAAP 759
Score = 49 (22.3 bits), Expect = 9.7e-07, Sum P(2) = 9.7e-07
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 29 SGMRPPMPGAFPPFDMMPP 47
S RPP G +PP MPP
Sbjct: 444 SHFRPPNSGGYPP-QHMPP 461
>UNIPROTKB|I3LQ53 [details] [associations]
symbol:I3LQ53 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000684 Pfam:PF05001 PROSITE:PS00115 GO:GO:0003677
GO:GO:0006366 GO:GO:0005665 GeneTree:ENSGT00700000104490
EMBL:FP565284 Ensembl:ENSSSCT00000030016 OMA:YAESDYL Uniprot:I3LQ53
Length = 543
Score = 144 (55.7 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 72/276 (26%), Positives = 99/276 (35%)
Query: 218 EVEKLRAELMNAPNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPP- 276
+ EK + + N+ A G G G++ + G + G G P
Sbjct: 49 DAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSV 108
Query: 277 -SATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPT 335
S T G G P+ ++ A + +P A P PG PG + PS
Sbjct: 109 GSGMTPGAAGFSPSAASDASGFSPGYSP--AWSPTPGSPG-----SPGPSSPYIPSPGGA 161
Query: 336 KGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPN 395
PSY P P Y+P GY Q S Y + P+Y PSY P Y P+
Sbjct: 162 MSPSYSPTS-PAYEPRSPGGYTPQSPS-Y-SPTSPSYS-PTSPSYSPTSP-NYS-PTSPS 215
Query: 396 YDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPS 455
Y P Y P Y P Y + +PSY P P Y Y +PSY P+
Sbjct: 216 YS-PTSPSYSPTS-PSYS-PTSPSY-SPTSPSYSPT-SPSYS-PTSPSYSPT-SPSYSPT 268
Query: 456 RGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARS 491
+ +P +P P + P S T P+ S
Sbjct: 269 SPSYSPTSP-SYSPTSPSYSPTS--PSYSPTSPSYS 301
Score = 121 (47.7 bits), Expect = 0.00040, P = 0.00040
Identities = 63/225 (28%), Positives = 80/225 (35%)
Query: 274 PPPSATTAGVVGAGPNTSTSAYAATQSG-TPMRAAYDIPRGPGYEASKGPGYDAS----- 327
P S T+ PN Y T +P +Y P P Y + P Y S
Sbjct: 333 PSYSPTSPSYSPTSPN-----YTPTSPNYSPTSPSYS-PTSPSYSPTS-PSYSPSSPRYT 385
Query: 328 -KAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGL 386
++P+Y P+ PSY P+ P Y PT P Y S Y P Y P Y P
Sbjct: 386 PQSPTYTPSS-PSYSPSS-PSYSPTS-PKYTPTSPS-YSPS-SPEYT-PTSPKYSPTSPK 439
Query: 387 GYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDM 446
Y P Y P Y + P Y P Y + +P Y P P Y Y
Sbjct: 440 -YS-PTSPKYS-PTSPTY-SPTTPKYS-PTSPTY-SPTSPVYTPT-SPKYS-PTSPTYSP 491
Query: 447 RRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARS 491
+P Y P+ T +P+G+ P P S T PA S
Sbjct: 492 T-SPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAIS 535
>UNIPROTKB|P02457 [details] [associations]
symbol:COL1A1 "Collagen alpha-1(I) chain" species:9031
"Gallus gallus" [GO:0005201 "extracellular matrix structural
constituent" evidence=IEA] [GO:0005581 "collagen" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000885
InterPro:IPR001007 Pfam:PF00093 Pfam:PF01410 ProDom:PD002078
PROSITE:PS01208 PROSITE:PS50184 PROSITE:PS51461 SMART:SM00038
SMART:SM00214 GO:GO:0046872 GO:GO:0005581 InterPro:IPR008160
Pfam:PF01391 GO:GO:0005201 HOVERGEN:HBG004933 EMBL:M17839
EMBL:M17838 EMBL:V00401 EMBL:M10571 EMBL:M17607 IPI:IPI00572548
PIR:A27179 PIR:A90458 PIR:I50629 PIR:S07234 UniGene:Gga.2073
UniGene:Gga.43371 IntAct:P02457 PRIDE:P02457 Uniprot:P02457
Length = 1453
Score = 149 (57.5 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 90/285 (31%), Positives = 109/285 (38%)
Query: 237 ADGSYG--GATGNSENETSGRPVGQNAYEDGYGVPQGH-GPPPSATTAGVVGAGPNTSTS 293
ADG G G TG++ + P G A G P G G P G AGP +T
Sbjct: 808 ADGQPGAKGETGDAGAKGDAGPPGP-AGPTGAPGPAGZVGAPGPKGARG--SAGPPGATG 864
Query: 294 AYAATQSGTPMRAAYDI----PRGP-GYEASKGPGYDASKA--PSYDPTKGPSYDPA-KG 345
A P + +I P GP G + SKGP + A P GP P KG
Sbjct: 865 FPGAAGRVGPPGPSGNIGLPGPPGPAGKZGSKGPRGETGPAGRPGEPGPAGPPGPPGEKG 924
Query: 346 -PGYD-P-----TKGP-GYDAQKGS-NYDAQRGPN-YDIHRGPSYDP-QRG-LGYDMQRG 393
PG D P T GP G Q+G QRG + GPS +P ++G G +RG
Sbjct: 925 SPGADGPIGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERG 984
Query: 394 PNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYD 453
P M GP PG GP EA R + + PG D G D
Sbjct: 985 PPGPM--GP-------PGL---AGPPGEAGREGAPGAEGAPGRDGAAGPKGDRGETGPAG 1032
Query: 454 PSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRG 498
P G GAP P G+ P G A PP +G+ P G
Sbjct: 1033 PPGAPGAPGAPGPVGPAGKNGDRGETGPAGPAGPPGPAGARGPAG 1077
>UNIPROTKB|D3ZZM1 [details] [associations]
symbol:Taf15 "Protein Taf15" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00641 PROSITE:PS01358
PROSITE:PS50102 PROSITE:PS50199 SMART:SM00360 SMART:SM00547
RGD:1309595 GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005622 EMBL:AC119615 IPI:IPI00950003
ProteinModelPortal:D3ZZM1 Ensembl:ENSRNOT00000064396
ArrayExpress:D3ZZM1 Uniprot:D3ZZM1
Length = 558
Score = 119 (46.9 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 66/216 (30%), Positives = 77/216 (35%)
Query: 258 GQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYE 317
G+ Y G G QG G P V P+ +A S P
Sbjct: 334 GRGGYR-GRGGFQGRGGDPK--NGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPSGG 390
Query: 318 ASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQK-GSNYDAQR-GPNYDIH 375
+G GY + + G D G G D + G GY + G +Y A R G Y
Sbjct: 391 DFRGRGYGGERG--FRGRGGRGGDRG-GYGADRSGG-GYGGDRSGGSYGADRSGGGYGGD 446
Query: 376 R-GPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGP 434
R G Y RG GY RG Y RG Y R GY RG Y R Y R
Sbjct: 447 RSGGGYGGDRGGGYGGDRG-GYGGDRGGSYGGDR-GGYGGDRGG-YGGDRG-GYGGDRSR 502
Query: 435 G-YDLQRGQG---YDMRRAPSYDPSRGTGFDGAPRG 466
G Y RG G Y R+ Y RG G+ G RG
Sbjct: 503 GAYGGDRGGGSGGYGGDRSGGYGGDRGGGY-GGDRG 537
Score = 70 (29.7 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 28/106 (26%), Positives = 48/106 (45%)
Query: 184 YHHCRGTYEYEKKF-----YNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRAAD 238
Y +G+Y+ + + YN + +S +NY + T+ + R + M+ D R
Sbjct: 121 YDQHQGSYDEQSNYQQHDSYNQNQQSYHPQRENY-SHHTQDD--RRD-MSRYGEDNRGYG 176
Query: 239 GSYGGATGNSENETSGR-PV-GQNAYEDG----YGVPQGHGPPPSA 278
GS GG G + GR P+ G + + G +G + +GP P A
Sbjct: 177 GSQGGGRGRGGYDKDGRGPMTGSSGGDRGGFKNFGGHRDYGPRPDA 222
>TAIR|locus:2012788 [details] [associations]
symbol:AT1G10390 "AT1G10390" species:3702 "Arabidopsis
thaliana" [GO:0005215 "transporter activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005643 "nuclear pore"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005635 "nuclear envelope"
evidence=IDA] InterPro:IPR007230 Pfam:PF04096 PROSITE:PS51434
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005635 GO:GO:0006810
GO:GO:0005643 eggNOG:NOG12793 SUPFAM:SSF82215 KO:K14297 HSSP:Q9Y6J4
EMBL:AY078948 EMBL:BT003030 EMBL:AK226964 IPI:IPI00523265
RefSeq:NP_001031018.1 RefSeq:NP_172510.2 UniGene:At.27877
ProteinModelPortal:Q8RY25 SMR:Q8RY25 STRING:Q8RY25 MEROPS:S59.A02
PaxDb:Q8RY25 PRIDE:Q8RY25 EnsemblPlants:AT1G10390.1
EnsemblPlants:AT1G10390.2 GeneID:837579 KEGG:ath:AT1G10390
TAIR:At1g10390 HOGENOM:HOG000085153 InParanoid:Q8RY25 OMA:ESISAMP
PhylomeDB:Q8RY25 ProtClustDB:CLSN2713828 Genevestigator:Q8RY25
Uniprot:Q8RY25
Length = 1041
Score = 146 (56.5 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 55/280 (19%), Positives = 93/280 (33%)
Query: 226 LMNAPNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPP---SATTAG 282
+ AP A GA+ + S G + +G G G P S +
Sbjct: 63 VFGAPQTSSPFASTPTFGASSSPAFGNSTPAFGASPASSPFGGSSGFGQKPLGFSTPQSN 122
Query: 283 VVGAGPNTSTSAYAATQSG--TPMRA----AYDIPRGPGYEASKGPGYDASKAPSYDPTK 336
G S A+ T G TP A A+ P P + A+ P + AS P++ T
Sbjct: 123 PFGNSTQQSQPAFGNTSFGSSTPFGATNTPAFGAPSTPSFGATSTPSFGASSTPAFGATN 182
Query: 337 GPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGP--NYDIHRGPSYDPQRGLGYDMQRGP 394
P++ + P + T P + A + + N G ++ + P
Sbjct: 183 TPAFGASNSPSFGATNTPAFGASPTPAFGSTGTTFGNTGFGSGGAFGASNTPAFGASGTP 242
Query: 395 NYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDP 454
+ P + P + P + A P++ P + + +P++
Sbjct: 243 AFGASGTPAFGASSTPAFGASSTPAFGASSTPAFGGSSTPSFGASNTSSFSFGSSPAFGQ 302
Query: 455 SRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGSG 494
S + F G++ G P P A+ P GSG
Sbjct: 303 ST-SAF-----GSSAFGSTPSPFGGA---QASTPTFGGSG 333
>RGD|1309595 [details] [associations]
symbol:Taf15 "TAF15 RNA polymerase II, TATA box binding protein
(TBP)-associated factor" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005622 "intracellular" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00641 PROSITE:PS01358
PROSITE:PS50102 PROSITE:PS50199 SMART:SM00360 SMART:SM00547
RGD:1309595 GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005622 EMBL:AC119615 IPI:IPI00950713
PRIDE:F1M8P1 Ensembl:ENSRNOT00000014438 ArrayExpress:F1M8P1
Uniprot:F1M8P1
Length = 554
Score = 118 (46.6 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 65/214 (30%), Positives = 77/214 (35%)
Query: 258 GQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYE 317
G+ Y G G QG G P V P+ +A S P
Sbjct: 334 GRGGYR-GRGGFQGRGGDPK--NGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPSGG 390
Query: 318 ASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQK-GSNYDAQR-GPNYDIH 375
+G GY + + G D G G D + G GY + G +Y A R G Y
Sbjct: 391 DFRGRGYGGERG--FRGRGGRGGDRG-GYGADRSGG-GYGGDRSGGSYGADRSGGGYGGD 446
Query: 376 RGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPG 435
R Y RG GY RG +Y RG GY R GY RG Y R Y R
Sbjct: 447 RS-GYGGDRG-GYGGDRGGSYGGDRG-GYGGDR-GGYGGDRGG-YGGDRG-GYGGDRRGA 500
Query: 436 YDLQRGQG---YDMRRAPSYDPSRGTGFDGAPRG 466
Y RG G Y R+ Y RG G+ G RG
Sbjct: 501 YGGDRGGGSGGYGGDRSGGYGGDRGGGY-GGDRG 533
Score = 70 (29.7 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 28/106 (26%), Positives = 48/106 (45%)
Query: 184 YHHCRGTYEYEKKF-----YNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRAAD 238
Y +G+Y+ + + YN + +S +NY + T+ + R + M+ D R
Sbjct: 121 YDQHQGSYDEQSNYQQHDSYNQNQQSYHPQRENY-SHHTQDD--RRD-MSRYGEDNRGYG 176
Query: 239 GSYGGATGNSENETSGR-PV-GQNAYEDG----YGVPQGHGPPPSA 278
GS GG G + GR P+ G + + G +G + +GP P A
Sbjct: 177 GSQGGGRGRGGYDKDGRGPMTGSSGGDRGGFKNFGGHRDYGPRPDA 222
>UNIPROTKB|Q96QC0 [details] [associations]
symbol:PPP1R10 "Serine/threonine-protein phosphatase 1
regulatory subunit 10" species:9606 "Homo sapiens" [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004864 "protein
phosphatase inhibitor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0072357 "PTW/PP1 phosphatase complex"
evidence=ISS] [GO:0000785 "chromatin" evidence=ISS] [GO:0006606
"protein import into nucleus" evidence=TAS] InterPro:IPR000571
InterPro:IPR003617 InterPro:IPR017923 Pfam:PF00642 Pfam:PF08711
PROSITE:PS50103 PROSITE:PS51319 SMART:SM00356 SMART:SM00509
GO:GO:0005634 EMBL:BA000025 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0000785 GO:GO:0006351 GO:GO:0003723
EMBL:AL662800 EMBL:AL662825 GO:GO:0000790 GO:GO:0006606
GO:GO:0004864 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0072357
EMBL:Y13247 EMBL:AJ544537 EMBL:AB088097 EMBL:BX248507
IPI:IPI00298731 PIR:JE0291 RefSeq:NP_002705.2 UniGene:Hs.106019
ProteinModelPortal:Q96QC0 SMR:Q96QC0 DIP:DIP-39343N IntAct:Q96QC0
MINT:MINT-1197376 STRING:Q96QC0 PhosphoSite:Q96QC0 DMDM:61214507
PaxDb:Q96QC0 PeptideAtlas:Q96QC0 PRIDE:Q96QC0
Ensembl:ENST00000376511 Ensembl:ENST00000383586
Ensembl:ENST00000420949 Ensembl:ENST00000424446
Ensembl:ENST00000426299 Ensembl:ENST00000429597
Ensembl:ENST00000449113 GeneID:5514 KEGG:hsa:5514 UCSC:uc003nqn.1
CTD:5514 GeneCards:GC06M030568 H-InvDB:HIX0165052
H-InvDB:HIX0166290 H-InvDB:HIX0166579 H-InvDB:HIX0166833
H-InvDB:HIX0167082 H-InvDB:HIX0167322 H-InvDB:HIX0167569
HGNC:HGNC:9284 HPA:CAB025501 MIM:603771 neXtProt:NX_Q96QC0
PharmGKB:PA33612 eggNOG:NOG69306 HOGENOM:HOG000049285
HOVERGEN:HBG053646 InParanoid:Q96QC0 OMA:PPPHEHR OrthoDB:EOG451DQK
PhylomeDB:Q96QC0 ChiTaRS:PPP1R10 GenomeRNAi:5514 NextBio:21326
ArrayExpress:Q96QC0 Bgee:Q96QC0 CleanEx:HS_PPP1R10
Genevestigator:Q96QC0 GermOnline:ENSG00000204569 Uniprot:Q96QC0
Length = 940
Score = 145 (56.1 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 63/248 (25%), Positives = 83/248 (33%)
Query: 239 GSYGGATGNSENETSGRPVGQNAYEDGYGVPQ-------GHGPPPSATTAGVVGAGPNTS 291
G GG G P G + + DG G P G GP P G G G N
Sbjct: 656 GGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRGGNEP 715
Query: 292 TSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPT 351
+ R+ P G G GPG + P +GP G+ P
Sbjct: 716 PPPPPPFRGARGGRSGGGPPNGRG-----GPGGGMVGGGGHRPHEGPGGGMGNSSGHRPH 770
Query: 352 KGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPG 411
+GPG GS + GP + G + P G G + G + GPG G
Sbjct: 771 EGPG--GGMGSGHRPHEGPGGSMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGGMGAGGG 828
Query: 412 YDVQRGPVYEAQRAPSYIPQRGPGY---------DLQRGQGYDMRRAPSYDPSRGTGFDG 462
+ GP + + P GPG+ D+ +G+D R P P G DG
Sbjct: 829 HRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRGHDHRGPP---PHEHRGHDG 885
Query: 463 APRGAAPH 470
G H
Sbjct: 886 PGHGGGGH 893
Score = 144 (55.7 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 71/268 (26%), Positives = 90/268 (33%)
Query: 254 GRPVGQNAYEDGYG--VPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIP 311
G P G + G G +P HG P ++G P G PMR +
Sbjct: 635 GGPKGMQHFPPGPGGPMPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGG-PMR 693
Query: 312 RGPGYEASKGPG-YD---ASKAPSYDPTKGPSYDPAKG--PGYDPTKG---PGYDAQKGS 362
GPG GPG Y + + P P + A+G G P G PG G
Sbjct: 694 GGPG----PGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGG 749
Query: 363 NYDAQRGP-----NYDIHRGPSYDPQRGLG--YDMQRGPNYDMQRGPGYETQRVPGYDVQ 415
+ GP N HR P P G+G + GP M G G+ PG +
Sbjct: 750 GHRPHEGPGGGMGNSSGHR-PHEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPGGGIS 808
Query: 416 RGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPP 475
G + P G G+ G G M + + P G G G P G PH VP
Sbjct: 809 GGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGSGGHRPHEGPGH-GGPHGHRPH-DVPG 866
Query: 476 PLNNVPYGSATPPARSGSGQPRGGNPAR 503
+ G R G GG R
Sbjct: 867 HRGHDHRGPPPHEHRGHDGPGHGGGGHR 894
Score = 130 (50.8 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 53/213 (24%), Positives = 72/213 (33%)
Query: 243 GATGNSENETSGRPV-GQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSG 301
G G +E P G G G P G G P G G P+ SG
Sbjct: 708 GGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGG-GHRPHEGPGGGMGNSSG 766
Query: 302 TPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKG 361
G G+ +GPG + P +GP + G G+ P +GPG G
Sbjct: 767 HRPHEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGGMGAG 826
Query: 362 SNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPN-YDMQRGPGYETQRVPGYDVQRGPVY 420
+ GP + + P G G+ G +D+ PG+ G+D RGP
Sbjct: 827 GGHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDV---PGHR-----GHD-HRGPPP 877
Query: 421 EAQRA---PSYIPQRGPGYDLQRGQGYDMRRAP 450
R P + G+D G DM P
Sbjct: 878 HEHRGHDGPGHGGGGHRGHDGGHSHGGDMSNRP 910
Score = 122 (48.0 bits), Expect = 0.00064, P = 0.00064
Identities = 50/195 (25%), Positives = 69/195 (35%)
Query: 234 RRAADGSYGGATGNSENETSGRPVGQNAYED----GYGVPQGHGPPPSATTAGVVGAG-- 287
R A G GG N G VG + G G+ G P G +G+G
Sbjct: 723 RGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHR 782
Query: 288 PNTSTSAYAATQSG-TPMRA-AYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKG 345
P+ G P I G G+ +GPG + P +GP
Sbjct: 783 PHEGPGGSMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGS 842
Query: 346 PGYDPTKGPGYDAQKGSN-YDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGY 404
G+ P +GPG+ G +D +D HRGP P G+D GP + G+
Sbjct: 843 GGHRPHEGPGHGGPHGHRPHDVPGHRGHD-HRGPP--PHEHRGHD---GPGHGGGGHRGH 896
Query: 405 ETQRVPGYDVQRGPV 419
+ G D+ PV
Sbjct: 897 DGGHSHGGDMSNRPV 911
>UNIPROTKB|F1P555 [details] [associations]
symbol:SFPQ "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000380 "alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=IEA] [GO:0042382 "paraspeckles" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016363 GO:GO:0000380 GO:GO:0042382 InterPro:IPR012975
Pfam:PF08075 GeneTree:ENSGT00390000005004 OMA:APGGHPK
EMBL:AADN02043825 EMBL:AADN02043826 IPI:IPI00574618
Ensembl:ENSGALT00000003963 ArrayExpress:F1P555 Uniprot:F1P555
Length = 647
Score = 143 (55.4 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 63/220 (28%), Positives = 90/220 (40%)
Query: 234 RRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSA-------TTAGVVGA 286
RR G GG + + G +GQN G G PQG G PP A
Sbjct: 18 RRGGGGGRGGPNHDFRSPPPGMGMGQNRGPMGGG-PQGPGGPPGGGPKSEPPKPPASTSA 76
Query: 287 GPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDAS-KAPSYDPTKGPSYDPAKG 345
P++S+S+ A T ++ P A + P A APS P+ GP
Sbjct: 77 PPSSSSSSSATTAGPAGSQSGPGAPPPSALPAGQPPQQQAQGSAPSSAPS-GPGGQQQPQ 135
Query: 346 PGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYE 405
P P+ P +KG GP +GP PQ+G G + GP + + GPG E
Sbjct: 136 PKPSPSPTPAGGPKKGQGQSPGGGP-----KGPG-GPQQGPGGPHKGGPGH--RGGPGGE 187
Query: 406 TQRVPGYDVQRGPVYEAQRAPSYIPQRGP-GYDLQRGQGY 444
++ G RG ++ Q++ S Q+GP G D +G+
Sbjct: 188 SR---G----RGQQHQGQQSLSL--QQGPAGGDQLSDEGF 218
Score = 130 (50.8 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 53/184 (28%), Positives = 67/184 (36%)
Query: 230 PNVDRRAADGSYG-----GATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVV 284
PN D R+ G G G G P G E PP S++++
Sbjct: 28 PNHDFRSPPPGMGMGQNRGPMGGGPQGPGGPPGGGPKSEPPKPPASTSAPPSSSSSSSAT 87
Query: 285 GAGPNTSTSAYAATQ-SGTPM-RAAYDIPRGPG-YEASKGPGYDASKAPSYDPTKGPSYD 341
AGP S S A S P + +G A GPG P P+ P+
Sbjct: 88 TAGPAGSQSGPGAPPPSALPAGQPPQQQAQGSAPSSAPSGPGGQQQPQPKPSPSPTPAGG 147
Query: 342 PAKGPGYDP---TKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDM 398
P KG G P KGPG Q+G + GP HRG RG G Q + +
Sbjct: 148 PKKGQGQSPGGGPKGPG-GPQQGPGGPHKGGPG---HRGGPGGESRGRGQQHQGQQSLSL 203
Query: 399 QRGP 402
Q+GP
Sbjct: 204 QQGP 207
>ZFIN|ZDB-GENE-030131-1600 [details] [associations]
symbol:ewsr1b "Ewing sarcoma breakpoint region 1b"
species:7955 "Danio rerio" [GO:0005622 "intracellular"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0021954 "central nervous system
neuron development" evidence=IMP] [GO:0007067 "mitosis"
evidence=IMP] InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00641 PROSITE:PS01358
PROSITE:PS50102 PROSITE:PS50199 SMART:SM00360 SMART:SM00547
ZFIN:ZDB-GENE-030131-1600 GO:GO:0007067 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622 GO:GO:0021954
GeneTree:ENSGT00530000063105 HOGENOM:HOG000038010
HOVERGEN:HBG000970 EMBL:BX664747 EMBL:BC097019 UniGene:Dr.76923
SMR:Q4QRG0 STRING:Q4QRG0 Ensembl:ENSDART00000003998 OMA:PVINIYL
Uniprot:Q4QRG0
Length = 579
Score = 147 (56.8 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 80/296 (27%), Positives = 106/296 (35%)
Query: 224 AELMNAPNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGV 283
A + N + ++ A SYG T +T G+ Q + Y + P +A A
Sbjct: 2 ASVTNYSSYNQAGAQQSYGSYTAPPA-QTYGQTAQQGYTQQDYS---SYAQPAAAPEATY 57
Query: 284 VGAGPNTSTSAYAATQSGTPM-RAAYDIPRGPGYEASKGPGYDASKAPSYDPTK--GPSY 340
A P S AYA Q G+ +AA P + PG A SY + G +
Sbjct: 58 SQAAP--SAGAYAQQQYGSTYGQAAATAAAAPAAYGTPQPGAYTQPAQSYGASSYTGSTA 115
Query: 341 DPAKGPGYDPTKGPGYDAQKG-SNYDAQ---RGP-NYDIHRGPSYDPQRGLGYDMQRG-- 393
PA Y PGY Q S Y Q P +Y P+Y+ Y G
Sbjct: 116 APAAQASYGSQ--PGYSTQPAYSGYSQQPAASAPQSYSASSQPAYNQS---AYSQPAGYS 170
Query: 394 -PNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPS-YIPQRGPGY-DLQRGQGY----DM 446
P Y Q+ PGY Q+ Y + P Q P+ Y PQ Y Q GQ D
Sbjct: 171 QPGYQAQQ-PGYGQQQQSAYGQGQPPQQHQQGPPAAYPPQGSSSYAQTQYGQQSAPQNDY 229
Query: 447 RRAPSYDPSRGT---GFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRGG 499
++ P S+G G+ G+ RG G P G G RGG
Sbjct: 230 QQNPYNSYSQGGVSGGYPGSQRGGYQDGGRDGYDRGGPRGRGMGRGGMGIAGDRGG 285
Score = 39 (18.8 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 8/16 (50%), Positives = 8/16 (50%)
Query: 488 PARSGSGQPRGGNPAR 503
P R G G RGG R
Sbjct: 410 PMRGGPGMDRGGMMGR 425
>UNIPROTKB|P12105 [details] [associations]
symbol:COL3A1 "Collagen alpha-1(III) chain" species:9031
"Gallus gallus" [GO:0005201 "extracellular matrix structural
constituent" evidence=IEA] [GO:0005581 "collagen" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000885
InterPro:IPR001007 Pfam:PF00093 Pfam:PF01410 ProDom:PD002078
PROSITE:PS01208 PROSITE:PS50184 PROSITE:PS51461 SMART:SM00038
SMART:SM00214 GO:GO:0046872 GO:GO:0005581 InterPro:IPR008160
Pfam:PF01391 eggNOG:NOG12793 GO:GO:0005201 HOVERGEN:HBG004933
EMBL:U07973 EMBL:X00822 EMBL:X00823 EMBL:X00826 EMBL:X00825
EMBL:X00827 EMBL:X00828 EMBL:X00830 EMBL:X00831 EMBL:K02302
EMBL:K02301 EMBL:V00391 EMBL:V00392 EMBL:M36662 IPI:IPI00590578
PIR:A05269 PIR:I50694 UniGene:Gga.42140 ProteinModelPortal:P12105
STRING:P12105 Uniprot:P12105
Length = 1262
Score = 146 (56.5 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 87/290 (30%), Positives = 112/290 (38%)
Query: 235 RAADGSYG--GATGN-SENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGA-GP-N 289
R G G GA G +N G P G+ G+P +G P AG G+ GP
Sbjct: 457 RGPPGEEGKRGANGEPGQNGVPGTP-GERGSPGFRGLPGSNGLPGEKGPAGERGSPGPPG 515
Query: 290 TSTSAYAATQSGTP----MRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKG 345
S A Q G P MR IP PG + GP + + P GP+ P
Sbjct: 516 PSGPAGDRGQDGGPGLPGMRGLPGIPGSPGSDGKPGPPGNQGE-PGRSGPPGPA-GPRGQ 573
Query: 346 PGYDPTKGP-GYDAQKGSNYDAQRGPNYDIHR-GPS-YDPQRGL-GYDMQRGPNYDM-QR 400
PG GP G + G N +RGP GP+ + GL G GP D +
Sbjct: 574 PGVMGFPGPKGNEGAPGKN--GERGPGGPPGTPGPAGKNGDVGLPGPPGPAGPAGDRGEP 631
Query: 401 GPGYET--QRVPGYDVQRGPVYEAQRAPSYIPQR---GPGYDLQRGQ-GYDMRRAPSYDP 454
GP Q +PG GP E + P+ GPG+ +G+ G R P P
Sbjct: 632 GPSGSPGLQGLPGGP---GPAGENGKPGEPGPKGDIGGPGFPGPKGENGIPGERGPQGPP 688
Query: 455 SRGTGFDGAPRGAAPHG-QVPPPLNNVPYGSATPPARSGSGQPRG--GNP 501
TG G P A G + PP P G+ P + G+ RG G+P
Sbjct: 689 GP-TGARGGPGPAGSEGAKGPPGPPGAPGGTGLPGLQGMPGE-RGASGSP 736
Score = 128 (50.1 bits), Expect = 0.00020, P = 0.00020
Identities = 87/281 (30%), Positives = 107/281 (38%)
Query: 242 GGATGNSENETSGRPVGQNAY-EDGY-GVPQGHGPPPSATTAGVVGAGPNTSTSAYA--- 296
GG TG E G P G A+ +DG G GPP TAG G+ P A
Sbjct: 301 GGPTG--ERGRPGNPGGPGAHGKDGAPGTAGPLGPPGPPGTAGFPGS-PGFKGEAGPPGP 357
Query: 297 ATQSGTPMRAAYDIPRGP-GYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKG-P 354
A SG P P+G G +GP A +P GPS P GPG +G P
Sbjct: 358 AGASGNPGERGEPGPQGQAGPPGPQGPPGRAG-SPGGKGEMGPSGIPG-GPGPPGGRGLP 415
Query: 355 GYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDM-QRGPGYETQRVPGYD 413
G G N A+ P G DP G +RG N RGP PG +
Sbjct: 416 GPPGTSG-NPGAKGTPGEPGKNGAKGDP----GPKGERGENGTPGARGP-------PGEE 463
Query: 414 VQRGPVYEAQR--APSYIPQRG-PGY-DLQRGQGYDMRRAPSYDPSRGTGFDGAPRG-AA 468
+RG E + P +RG PG+ L G + P+ + RG+ P G A
Sbjct: 464 GKRGANGEPGQNGVPGTPGERGSPGFRGLPGSNGLPGEKGPAGE--RGSPGPPGPSGPAG 521
Query: 469 PHGQV--P--PPLNNVPYGSATPPARSGSGQPRG--GNPAR 503
GQ P P + +P G P G P G G P R
Sbjct: 522 DRGQDGGPGLPGMRGLP-GIPGSPGSDGKPGPPGNQGEPGR 561
Score = 127 (49.8 bits), Expect = 0.00026, P = 0.00026
Identities = 78/276 (28%), Positives = 97/276 (35%)
Query: 243 GATGN-SENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSG 301
G G +N G P G G P GPP G G P + + G
Sbjct: 428 GTPGEPGKNGAKGDP-GPKGERGENGTPGARGPPGEEGKRGANGE-PGQNGVPGTPGERG 485
Query: 302 TPMRAAYDIPRGPGYEASKGP-GYDASKAPSYDPTKGPSYDPAK--GPGYDPTKG-PGYD 357
+P +P G KGP G S P P+ GP+ D + GPG +G PG
Sbjct: 486 SP--GFRGLPGSNGLPGEKGPAGERGSPGPP-GPS-GPAGDRGQDGGPGLPGMRGLPGIP 541
Query: 358 AQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYD--MQRGPGYE-TQRVPGYDV 414
GS D + GP G +P R G GP + PG + + PG +
Sbjct: 542 GSPGS--DGKPGPP-----GNQGEPGRS-GPPGPAGPRGQPGVMGFPGPKGNEGAPGKNG 593
Query: 415 QRGPVYEAQRAPSYIPQRG----PGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPH 470
+RGP P + G PG G D R P PS G G P G P
Sbjct: 594 ERGPG-GPPGTPGPAGKNGDVGLPGPPGPAGPAGD-RGEPG--PSGSPGLQGLPGGPGPA 649
Query: 471 GQVPPPLNNVPYGSATPPARSGSGQPRGGN--PARR 504
G+ P P G P G P+G N P R
Sbjct: 650 GENGKPGEPGPKGDIGGPGFPG---PKGENGIPGER 682
Score = 125 (49.1 bits), Expect = 0.00043, P = 0.00043
Identities = 74/259 (28%), Positives = 95/259 (36%)
Query: 256 PVGQNAYEDGYGVPQGHGPPPSATTAGVVG-AGPNTSTSAYAATQSGTPMRAAYDIPRG- 313
P G N Y+ G P GP AG++G AGP + G P R + RG
Sbjct: 192 PPGSNGYQGPPGEPGQPGPSGPPGPAGMIGPAGP--------PGKDGEPGRPGRNGDRGI 243
Query: 314 PGYEASKG-PGYDASKAPSYDPTKG-PSYDPAKGPGYDPTKGP-GYDAQKGSNYD-AQRG 369
PG KG PG P +G D AKG P GP G Q G+N Q G
Sbjct: 244 PGLPGHKGHPGMPGM--PGMKGARGFDGKDGAKGDSGAP--GPKGEAGQPGANGSPGQPG 299
Query: 370 PNYDI-HRGPSYDPQRGLGYDMQRGPNYDMQRGP-GYE-TQRVPGYDVQRGPVYEAQRAP 426
P RG +P + P GP G T PG P ++ + P
Sbjct: 300 PGGPTGERGRPGNPGGPGAHGKDGAPGTAGPLGPPGPPGTAGFPG-----SPGFKGEAGP 354
Query: 427 SYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSAT 486
P G +RG+ +A P G G+P G G++ P + +P G
Sbjct: 355 PG-PAGASGNPGERGEPGPQGQAGPPGPQGPPGRAGSPGGK---GEMGP--SGIPGGPGP 408
Query: 487 PPARSGSGQP-RGGNPARR 504
P R G P GNP +
Sbjct: 409 PGGRGLPGPPGTSGNPGAK 427
>ZFIN|ZDB-GENE-080204-113 [details] [associations]
symbol:zgc:172323 "zgc:172323" species:7955 "Danio
rerio" [GO:0005882 "intermediate filament" evidence=IEA]
[GO:0005198 "structural molecule activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001664
InterPro:IPR006821 Pfam:PF04732 ZFIN:ZDB-GENE-080204-113
GO:GO:0005198 GO:GO:0005882 HOVERGEN:HBG013015 InterPro:IPR016044
PANTHER:PTHR23239 Pfam:PF00038 GeneTree:ENSGT00560000076873
EMBL:CR848819 EMBL:BC155653 IPI:IPI00492297 RefSeq:NP_001107899.1
UniGene:Dr.18713 SMR:A9JRG7 Ensembl:ENSDART00000075191
GeneID:564165 KEGG:dre:564165 eggNOG:NOG147695 HOGENOM:HOG000207709
NextBio:20885253 Uniprot:A9JRG7
Length = 847
Score = 144 (55.7 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 107/460 (23%), Positives = 167/460 (36%)
Query: 58 QHVEMQKLATEN-QRLAATHGTLRQEL--AAAQHELQILHGQIGGMKSERELQ-----MR 109
QH + +A +N Q + + + +L ++H Q+ H + G +++++Q M
Sbjct: 281 QH-QYDDIAAKNLQEMDSWYKNKFDDLNNKTSKHVDQVRHVREGIASAKKDIQNKERDMD 339
Query: 110 NLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQ 169
++ K +EA+++ + +++K + Q + A + + Q T L R + D
Sbjct: 340 SMNTKNEALEAQIRDTQD---KYRKELEDLQARIEALQLELKSSKQRTALLLREYQD--- 393
Query: 170 IPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 229
LL+ SL E R E E ++S+Q M ++ +T V + A A
Sbjct: 394 ---LLNVKMSLEIEITTYRKLIEGEDSRLTSMVQSMQTM--TLMSGSTSVHTVAA---GA 445
Query: 230 PNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGH---GPPPSATTAGVVGA 286
N R G GG G G P G G+ G A VG
Sbjct: 446 ANRGGRGLAGGLGGDVGLEFAGGLGGPATGLERGVGRGLDGSATVLGESVGGDAARGVGG 505
Query: 287 GPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGP 346
GP T + G + + I G G GP + DP KG GP
Sbjct: 506 GPTTVLGGHVDGGLGGGIGSGPAIGLGGG--VGSGPATGFAGGVGGDPAKGLPGGVGGGP 563
Query: 347 GYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYET 406
G G D KG GP + G DP +GL D+ P + G G +
Sbjct: 564 ATGLGGGVGGDPAKGLPGGVGGGPATGLTGGVGGDPGKGLS-DVGGVPATSLAGGVGGDP 622
Query: 407 QR-VPGYDVQRGPVYEAQRAPSYIPQRG-PGYDLQRGQGYDMRRAPSYDPSRGT--GFDG 462
+ +PG V GP P +G PG + G + D ++G G G
Sbjct: 623 AKGLPG-GVGGGPATGLAGGVGVDPAKGLPG-GVSGGPASGLAGGVGGDTAKGLPGGVGG 680
Query: 463 APRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRGGNPA 502
P G P+ + G P++ G GG PA
Sbjct: 681 GPATGLAGGVGGVPVTGLAGGVGGDPSKGLPGGV-GGGPA 719
>UNIPROTKB|G1RSL2 [details] [associations]
symbol:COL4A4 "Uncharacterized protein" species:61853
"Nomascus leucogenys" [GO:0005201 "extracellular matrix structural
constituent" evidence=ISS] [GO:0005587 "collagen type IV"
evidence=ISS] [GO:0005605 "basal lamina" evidence=ISS] [GO:0032836
"glomerular basement membrane development" evidence=ISS]
InterPro:IPR001442 Pfam:PF01413 PROSITE:PS51403 SMART:SM00111
InterPro:IPR016187 SUPFAM:SSF56436 GO:GO:0005605 InterPro:IPR008160
Pfam:PF01391 GO:GO:0005201 GO:GO:0005587 Gene3D:2.170.240.10
GeneTree:ENSGT00690000101772 GO:GO:0032836 OMA:FRGDMGD
EMBL:ADFV01083072 EMBL:ADFV01083073 EMBL:ADFV01083074
EMBL:ADFV01083075 EMBL:ADFV01083076 EMBL:ADFV01083077
EMBL:ADFV01083078 Ensembl:ENSNLET00000017067 Uniprot:G1RSL2
Length = 1690
Score = 147 (56.8 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 79/253 (31%), Positives = 99/253 (39%)
Query: 262 YEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKG 321
Y G P G P G GA P S S + GTP +IP PG+ G
Sbjct: 671 YPGRQGPPGFDGLPGPKGFPGPQGA-PGLSGSDGHKGRPGTP--GTSEIPGPPGFRGDMG 727
Query: 322 -PGYDASKAPSYDPTKGPSYDPA----KG-PGYDPTKGP-GYDAQKG-SNYDAQRGPNYD 373
PG+ + S GP P KG PG DP GP G ++G S +GP D
Sbjct: 728 DPGFGGERGSSPVGPPGPPGSPGVNGQKGIPG-DPAFGPLGPPGKRGLSGVPGIKGPRGD 786
Query: 374 IHRG-PSYDPQRGL-GYDMQRGPN-YDMQRG-PGYETQRVPGYDVQRG-PVYEAQRA-PS 427
G P + G+ G+ +GP + G PG PG+ +RG P Q P
Sbjct: 787 --PGCPGAEGPAGIPGFPGLKGPKGREGHAGFPGVPGP--PGHSCERGAPGIPGQPGLPG 842
Query: 428 YIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVP--YGSA 485
Y P PG +GQ D+ P P+ G G P HG PP L +P +G
Sbjct: 843 Y-PG-SPGAPGGKGQPGDV--GPP-GPAGMKGLPGLPGRPGAHG--PPGLPGIPGPFGDD 895
Query: 486 TPPARSGSGQPRG 498
P G PRG
Sbjct: 896 GLPGPPGPKGPRG 908
Score = 123 (48.4 bits), Expect = 0.00099, P = 0.00099
Identities = 76/253 (30%), Positives = 97/253 (38%)
Query: 270 QGH-GPPPSATTAGVVGA-GPNTSTSAYAATQSGTPMRAAYDIPRGP-GYEASKG-PGYD 325
+GH G P G G G T + T G +D GP G+ +G PG
Sbjct: 640 RGHPGVPGRPGVRGPDGLKGQKGDTISCNVTYPGRQGPPGFDGLPGPKGFPGPQGAPGLS 699
Query: 326 ASKAPSYDP-TKGPSYDPAKGPGYDPTKG-PGYDAQKGSNYDAQRGP----NYDIHRGPS 379
S P T G S P PG+ G PG+ ++GS+ GP + +G
Sbjct: 700 GSDGHKGRPGTPGTSEIPGP-PGFRGDMGDPGFGGERGSSPVGPPGPPGSPGVNGQKGIP 758
Query: 380 YDPQRG-LGYDMQRG----PNYDMQRG----PGYETQR-VPGYDVQRGPVYEAQRA--PS 427
DP G LG +RG P RG PG E +PG+ +GP A P
Sbjct: 759 GDPAFGPLGPPGKRGLSGVPGIKGPRGDPGCPGAEGPAGIPGFPGLKGPKGREGHAGFPG 818
Query: 428 YIPQRGPGYDLQRGQ-GYDMRRA-PSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSA 485
+P PG+ +RG G + P Y P G GAP G G V PP G
Sbjct: 819 -VPGP-PGHSCERGAPGIPGQPGLPGY-P----GSPGAPGGKGQPGDVGPPGPAGMKGLP 871
Query: 486 TPPARSGSGQPRG 498
P R G+ P G
Sbjct: 872 GLPGRPGAHGPPG 884
>FB|FBgn0262126 [details] [associations]
symbol:gho "ghost" species:7227 "Drosophila melanogaster"
[GO:0004252 "serine-type endopeptidase activity" evidence=ISS]
[GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA]
[GO:0006886 "intracellular protein transport" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0030127 "COPII
vesicle coat" evidence=IEA] [GO:0005811 "lipid particle"
evidence=IDA] [GO:0035158 "regulation of tube diameter, open
tracheal system" evidence=IMP] [GO:0009306 "protein secretion"
evidence=IMP] [GO:0035151 "regulation of tube size, open tracheal
system" evidence=IMP] [GO:0070971 "endoplasmic reticulum exit site"
evidence=IDA] [GO:0003331 "positive regulation of extracellular
matrix constituent secretion" evidence=IMP] [GO:0007029
"endoplasmic reticulum organization" evidence=IMP] [GO:0048081
"positive regulation of cuticle pigmentation" evidence=IMP]
[GO:0030011 "maintenance of cell polarity" evidence=IMP]
[GO:0007030 "Golgi organization" evidence=IMP] [GO:0016203 "muscle
attachment" evidence=IMP] [GO:0035149 "lumen formation, open
tracheal system" evidence=IMP] [GO:0034394 "protein localization to
cell surface" evidence=IMP] [GO:0040003 "chitin-based cuticle
development" evidence=IMP] [GO:0022409 "positive regulation of
cell-cell adhesion" evidence=IMP] [GO:0008360 "regulation of cell
shape" evidence=IMP] [GO:0071711 "basement membrane organization"
evidence=IMP] [GO:0000902 "cell morphogenesis" evidence=IMP]
InterPro:IPR006895 InterPro:IPR006896 InterPro:IPR006900
Pfam:PF04810 Pfam:PF04811 Pfam:PF04815 GO:GO:0006886 EMBL:AE014134
GO:GO:0008360 GO:GO:0005811 GO:GO:0008270 GO:GO:0009306
GO:GO:0016787 GO:GO:0016203 GO:GO:0000902 InterPro:IPR007123
Pfam:PF00626 GO:GO:0006888 GO:GO:0040003 GO:GO:0034394
GO:GO:0003331 GO:GO:0071711 GO:GO:0007030 GO:GO:0007029
GO:GO:0030011 GO:GO:0035158 GO:GO:0022409 GO:GO:0035149
GO:GO:0030127 SUPFAM:SSF82919 GO:GO:0070971 InterPro:IPR012990
Pfam:PF08033 SUPFAM:SSF81811 eggNOG:COG5028 KO:K14007
GeneTree:ENSGT00590000082962 HSSP:P40482 OMA:QDQGNCN GO:GO:0048081
EMBL:AY052042 RefSeq:NP_608664.2 UniGene:Dm.269 SMR:Q9VQ94
IntAct:Q9VQ94 MINT:MINT-283494 STRING:Q9VQ94
EnsemblMetazoa:FBtr0077810 EnsemblMetazoa:FBtr0329964 GeneID:33409
KEGG:dme:Dmel_CG10882 UCSC:CG10882-RA CTD:33409 FlyBase:FBgn0262126
InParanoid:Q9VQ94 OrthoDB:EOG4CVDNW GenomeRNAi:33409 NextBio:783418
Uniprot:Q9VQ94
Length = 1193
Score = 135 (52.6 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 65/231 (28%), Positives = 84/231 (36%)
Query: 267 GVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIP---RGPGYEASKGPG 323
G P G PP + + + P S +++ G P P PG + G
Sbjct: 211 GQPPLPGQPPFS--GQIPTSQPAPSPYGVPSSRPGQPQLPPGATPPTYTQPGLPPQQQQG 268
Query: 324 YDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQ 383
+ P P + P + P + PG P PG Q G+ Y A + Y G + Q
Sbjct: 269 IPPLQQPGI-PQQQPGFPPQQ-PGLPPLSQPGLPPQPGAPYGAPQQGGYS---G-GFPGQ 322
Query: 384 RGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRG----PGYDLQ 439
G+ P PG + P + + P Y Q+ P Y PQ G PGY Q
Sbjct: 323 APGGFPGAPPPL------PGQQAAAPPQFGAPQ-PGYPGQQ-PGYPPQPGQQPMPGYPPQ 374
Query: 440 RGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPAR 490
GQ P Y P G GF G P G Q P P Y A P AR
Sbjct: 375 PGQQLG---GPGYPPQPGAGFPGQP-GRPGFNQPPMPGAGNMYQQA-PQAR 420
Score = 127 (49.8 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 75/283 (26%), Positives = 100/283 (35%)
Query: 239 GSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHG-PPPSATTAGVVGAGPNTSTSAY-- 295
G GGA G P G+ + PPP+ GA P T +Y
Sbjct: 90 GGVGGANPLKPPLPQGAPAAAAPPPTGFNQFNSNAAPPPTNNNNAAFGAPPPTQAGSYVN 149
Query: 296 -AATQSGTPMRAAYDIPRGPGYEASKG--PGYDASKAPSYDPTKGPSYDPAKG------- 345
A S TP A I + A+ P KA + G PA G
Sbjct: 150 GALPPSSTPQSVASGINQMSLNSATLAGLPHMPPPKAATPGAAPGQPPIPAAGSTSQPPL 209
Query: 346 PGYDPTKGPGYDAQKGSNYDAQRGPN-YDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGY 404
PG P PG G +Q P+ Y + PQ G P Y P
Sbjct: 210 PGQPPL--PGQPPFSGQIPTSQPAPSPYGVPSSRPGQPQLPPG---ATPPTYTQPGLPPQ 264
Query: 405 ETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYD-PSRGTGFDGA 463
+ Q +P +Q+ + Q+ P + PQ+ PG G + Y P +G G+ G
Sbjct: 265 QQQGIP--PLQQPGI--PQQQPGFPPQQ-PGLPPLSQPGLPPQPGAPYGAPQQG-GYSGG 318
Query: 464 PRGAAPHG--QVPPPLNNVPYGSATPPARSGSGQPRGGNPARR 504
G AP G PPPL P A P + G+ QP G P ++
Sbjct: 319 FPGQAPGGFPGAPPPL---PGQQAAAPPQFGAPQP--GYPGQQ 356
Score = 116 (45.9 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 69/272 (25%), Positives = 96/272 (35%)
Query: 239 GSY--GGATGNSENETSGRPVGQNAYEDGY--GVPQGHGPPPSATTAGVVGAGPNTSTSA 294
GSY G +S ++ + Q + G+P H PPP A T G A P
Sbjct: 145 GSYVNGALPPSSTPQSVASGINQMSLNSATLAGLP--HMPPPKAATPG---AAPGQPPIP 199
Query: 295 YAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTK-- 352
A + S P+ +P P + + + P + +P P+ P P PG P
Sbjct: 200 AAGSTSQPPLPGQPPLPGQPPF-SGQIPTSQPAPSPYGVPSSRPG-QPQLPPGATPPTYT 257
Query: 353 GPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGY 412
PG Q+ + P + P + PQ+ G P Q G Y + GY
Sbjct: 258 QPGLPPQQQQGIPPLQQPGIP-QQQPGFPPQQP-GLPPLSQPGLPPQPGAPYGAPQQGGY 315
Query: 413 DVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYD-PSRGTGFDGAPRGAAPHG 471
G + Q AP P P Q+ AP P + G+ P G P
Sbjct: 316 S---GG-FPGQ-APGGFPGAPPPLPGQQAAAPPQFGAPQPGYPGQQPGYPPQP-GQQPMP 369
Query: 472 QVPPPLNNVPYGSATPPARSGSGQPRGGNPAR 503
PP G PP + G+G P G P R
Sbjct: 370 GYPPQPGQQLGGPGYPP-QPGAGFP--GQPGR 398
Score = 58 (25.5 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 30 GMRPPMPGAFPPFDM-MPPPEVMEQKIASQHVEMQ-KLATENQRLAAT----HGTLRQEL 83
G PP G +PP +P + +Q++ Q + Q + AA+ +G +Q+L
Sbjct: 20 GAPPPNSGGWPPQQQQLPQQQPPQQQLPPQQQQQQPQYGAPPPTSAASQPYLNGNYQQQL 79
Query: 84 AAAQHELQILHGQIGG 99
A + L + G +GG
Sbjct: 80 ATSMGGLSV-GGGVGG 94
Score = 40 (19.1 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 31 MRPPMP-GAFPPFDMMPPPEVMEQ 53
++PP+P GA P PPP Q
Sbjct: 98 LKPPLPQGA--PAAAAPPPTGFNQ 119
>UNIPROTKB|Q7YR38 [details] [associations]
symbol:PPP1R10 "Serine/threonine-protein phosphatase 1
regulatory subunit 10" species:9598 "Pan troglodytes" [GO:0000785
"chromatin" evidence=ISS] [GO:0072357 "PTW/PP1 phosphatase complex"
evidence=ISS] InterPro:IPR000571 InterPro:IPR003617
InterPro:IPR017923 Pfam:PF00642 Pfam:PF08711 PROSITE:PS50103
PROSITE:PS51319 SMART:SM00356 SMART:SM00509 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0000785
GO:GO:0006351 GO:GO:0003723 EMBL:BA000041 GO:GO:0004864
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0072357 CTD:5514
eggNOG:NOG69306 HOGENOM:HOG000049285 HOVERGEN:HBG053646 OMA:PPPHEHR
GeneTree:ENSGT00530000063820 EMBL:AB210175 EMBL:AB210176
RefSeq:NP_001038965.1 UniGene:Ptr.6270 ProteinModelPortal:Q7YR38
Ensembl:ENSPTRT00000033108 GeneID:462544 KEGG:ptr:462544
NextBio:20841794 Uniprot:Q7YR38
Length = 940
Score = 143 (55.4 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 63/248 (25%), Positives = 83/248 (33%)
Query: 239 GSYGGATGNSENETSGRPVGQNAYEDGYGVPQ-------GHGPPPSATTAGVVGAGPNTS 291
G GG G P G + + DG G P G GP P G G G N
Sbjct: 656 GGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRGGNEP 715
Query: 292 TSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPT 351
+ R+ P G G GPG + P +GP G+ P
Sbjct: 716 PPPPPPFRGARGGRSGGGPPNGRG-----GPGGGMVGGGGHRPHEGPGGGMGNNSGHRPH 770
Query: 352 KGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPG 411
+GPG GS + GP + G + P G G + G + GPG G
Sbjct: 771 EGPG--GGMGSGHRPHEGPAGSMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGGMGAGGG 828
Query: 412 YDVQRGPVYEAQRAPSYIPQRGPGY---------DLQRGQGYDMRRAPSYDPSRGTGFDG 462
+ GP + + P GPG+ D+ +G+D R P P G DG
Sbjct: 829 HRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRGHDHRGPP---PHEHRGHDG 885
Query: 463 APRGAAPH 470
G H
Sbjct: 886 PGHGGGGH 893
Score = 142 (55.0 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 71/268 (26%), Positives = 90/268 (33%)
Query: 254 GRPVGQNAYEDGYG--VPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIP 311
G P G + G G +P HG P ++G P G PMR +
Sbjct: 635 GGPKGMQHFPPGPGGPMPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGG-PMR 693
Query: 312 RGPGYEASKGPG-YD---ASKAPSYDPTKGPSYDPAKG--PGYDPTKG---PGYDAQKGS 362
GPG GPG Y + + P P + A+G G P G PG G
Sbjct: 694 GGPG----PGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGG 749
Query: 363 NYDAQRGP-----NYDIHRGPSYDPQRGLG--YDMQRGPNYDMQRGPGYETQRVPGYDVQ 415
+ GP N HR P P G+G + GP M G G+ PG +
Sbjct: 750 GHRPHEGPGGGMGNNSGHR-PHEGPGGGMGSGHRPHEGPAGSMGGGGGHRPHEGPGGGIS 808
Query: 416 RGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPP 475
G + P G G+ G G M + + P G G G P G PH VP
Sbjct: 809 GGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGSGGHRPHEGPGH-GGPHGHRPH-DVPG 866
Query: 476 PLNNVPYGSATPPARSGSGQPRGGNPAR 503
+ G R G GG R
Sbjct: 867 HRGHDHRGPPPHEHRGHDGPGHGGGGHR 894
Score = 132 (51.5 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 54/214 (25%), Positives = 72/214 (33%)
Query: 258 GQNAYEDGYGVPQGHGPPPS-----ATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPR 312
G Y G G G+ PPP G G GP G ++ P
Sbjct: 699 GPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPG 758
Query: 313 G-----PGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQ 367
G G+ +GPG + P +GP+ G G+ P +GPG GS +
Sbjct: 759 GGMGNNSGHRPHEGPG--GGMGSGHRPHEGPAGSMGGGGGHRPHEGPGGGISGGSGHRPH 816
Query: 368 RGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGY------ETQRVPGY--DVQRGPV 419
GP + G + P G G M + GPG+ VPG+ RGP
Sbjct: 817 EGPGGGMGAGGGHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRGHDHRGPP 876
Query: 420 YEAQRA---PSYIPQRGPGYDLQRGQGYDMRRAP 450
R P + G+D G DM P
Sbjct: 877 PHEHRGHDGPGHGGGGHRGHDGGHSHGGDMSNRP 910
Score = 123 (48.4 bits), Expect = 0.00050, P = 0.00050
Identities = 50/195 (25%), Positives = 70/195 (35%)
Query: 234 RRAADGSYGGATGNSENETSGRPVGQNAYED----GYGVPQGHGPPPSATTAGVVGAG-- 287
R A G GG N G VG + G G+ G P G +G+G
Sbjct: 723 RGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGGGMGNNSGHRPHEGPGGGMGSGHR 782
Query: 288 PNTSTSAYAATQSG-TPMRA-AYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKG 345
P+ + G P I G G+ +GPG + P +GP
Sbjct: 783 PHEGPAGSMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGS 842
Query: 346 PGYDPTKGPGYDAQKGSN-YDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGY 404
G+ P +GPG+ G +D +D HRGP P G+D GP + G+
Sbjct: 843 GGHRPHEGPGHGGPHGHRPHDVPGHRGHD-HRGPP--PHEHRGHD---GPGHGGGGHRGH 896
Query: 405 ETQRVPGYDVQRGPV 419
+ G D+ PV
Sbjct: 897 DGGHSHGGDMSNRPV 911
>UNIPROTKB|Q5TM61 [details] [associations]
symbol:PPP1R10 "Serine/threonine-protein phosphatase 1
regulatory subunit 10" species:9544 "Macaca mulatta" [GO:0000785
"chromatin" evidence=ISS] [GO:0072357 "PTW/PP1 phosphatase complex"
evidence=ISS] InterPro:IPR000571 InterPro:IPR003617
InterPro:IPR017923 Pfam:PF00642 Pfam:PF08711 PROSITE:PS50103
PROSITE:PS51319 SMART:SM00356 SMART:SM00509 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0000785
GO:GO:0006351 GO:GO:0003723 EMBL:AB128049 GO:GO:0004864
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0072357 CTD:5514
eggNOG:NOG69306 HOVERGEN:HBG053646 RefSeq:NP_001108416.1
UniGene:Mmu.17467 ProteinModelPortal:Q5TM61 GeneID:711949
KEGG:mcc:711949 NextBio:19975847 Uniprot:Q5TM61
Length = 940
Score = 143 (55.4 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 73/271 (26%), Positives = 93/271 (34%)
Query: 254 GRPVGQNAYEDGYG--VPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIP 311
G P G + G G +P HG P ++G P G PMR +
Sbjct: 635 GGPKGMQHFPPGPGGPMPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGG-PMR 693
Query: 312 RGPG-----YEASKGPGYDASKAPSYDPTKGPSYDPAKG--PGYDPTKG---PGYDAQKG 361
GPG Y +G G ++ P P P + A+G G P G PG G
Sbjct: 694 GGPGPGPGPYHRGRG-GRGGNEPP---PPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGG 749
Query: 362 SNYDAQRGP-----NYDIHRGPSYDPQRGLG--YDMQRGPNYDMQRGPGYETQRVPGYDV 414
+ GP N HR P P G+G + GP M G G+ PG +
Sbjct: 750 GGHRPHEGPGGGMGNSSGHR-PHEGPGSGMGSGHRPHEGPGSSMGGGGGHRPHEGPGGGI 808
Query: 415 QRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVP 474
G + P G G+ G G M + + P G G G P G PH VP
Sbjct: 809 SGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGSGGHRPHEGPGH-GGPHGHRPH-DVP 866
Query: 475 PPLNNVPYGSATPPA--RSGSGQPRGGNPAR 503
+ G PP R G GG R
Sbjct: 867 GHRGHDHRG---PPHEHRGHDGPGHGGGGHR 894
Score = 142 (55.0 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 54/213 (25%), Positives = 73/213 (34%)
Query: 242 GGATGNSENETSGRPV-GQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQS 300
GG GN P G G G P G G P G G P+ S
Sbjct: 708 GGRGGNEPPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGG-GHRPHEGPGGGMGNSS 766
Query: 301 GTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQK 360
G G G+ +GPG + P +GP + G G+ P +GPG
Sbjct: 767 GHRPHEGPGSGMGSGHRPHEGPGSSMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGGMGA 826
Query: 361 GSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPN-YDMQRGPGYETQRVPGYDVQRGPV 419
G + GP + + P G G+ G +D+ PG+ G+D RGP
Sbjct: 827 GGGHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDV---PGHR-----GHD-HRGPP 877
Query: 420 YE--AQRAPSYIPQRGPGYDLQRGQGYDMRRAP 450
+E P + G+D G DM P
Sbjct: 878 HEHRGHDGPGHGGGGHRGHDGGHSHGGDMSNRP 910
Score = 140 (54.3 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 62/245 (25%), Positives = 83/245 (33%)
Query: 239 GSYGGATGNSENETSGRPVGQNAYEDGYGVPQ-------GHGPPPSATTAGVVGAGPNTS 291
G GG G P G + + DG G P G GP P G G G N
Sbjct: 656 GGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRGGNEP 715
Query: 292 TSAYAATQSGTPMRAAYDIPRGPGYEASKG-PGYDASKAPSYDPTKGPSYDPAKGPGYDP 350
P R A G G +G PG + P +GP G+ P
Sbjct: 716 PPP-----PPPPFRGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGGGMGNSSGHRP 770
Query: 351 TKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVP 410
+GPG + GS + GP + G + P G G + G + GPG
Sbjct: 771 HEGPG--SGMGSGHRPHEGPGSSMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGGMGAGG 828
Query: 411 GYDVQRGPVYEAQRAPSYIPQRGPGYDLQRG-QGYDMRRAPSYD----PSRGTGFDGAPR 465
G+ GP + + P GPG+ G + +D+ +D P G DG
Sbjct: 829 GHRPHEGPGGSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRGHDHRGPPHEHRGHDGPGH 888
Query: 466 GAAPH 470
G H
Sbjct: 889 GGGGH 893
>UNIPROTKB|F1SKM1 [details] [associations]
symbol:COL7A1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0031012 "extracellular matrix" evidence=IDA]
[GO:0004867 "serine-type endopeptidase inhibitor activity"
evidence=IEA] InterPro:IPR002035 InterPro:IPR002223
InterPro:IPR003961 Pfam:PF00014 Pfam:PF00041 Pfam:PF00092
PRINTS:PR00759 PROSITE:PS50234 PROSITE:PS50279 PROSITE:PS50853
SMART:SM00060 SMART:SM00327 Gene3D:2.60.40.10 InterPro:IPR013783
GO:GO:0004867 SUPFAM:SSF49265 Gene3D:4.10.410.10 InterPro:IPR020901
SUPFAM:SSF57362 PROSITE:PS00280 InterPro:IPR008160 Pfam:PF01391
GO:GO:0005604 OMA:RRVCTTA GeneTree:ENSGT00700000104301
EMBL:CU633242 Ensembl:ENSSSCT00000012432 ArrayExpress:F1SKM1
Uniprot:F1SKM1
Length = 2939
Score = 148 (57.2 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 82/272 (30%), Positives = 105/272 (38%)
Query: 256 PVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRG-P 314
P G G P GPP SA G G P S + + GTP + P+G P
Sbjct: 1270 PPGPPGLPGRIGAPGPPGPPGSAIAKGERGF-PGADGSPGSPGRPGTPGTSG---PKGSP 1325
Query: 315 GYEASKG-PGYDASKAPSYDPTKGPSYDPAKGPGYDPTKG-PGYDAQKGSNYDAQRGPNY 372
G+ +G PG + P +P + +GPG KG PG GS RGP+
Sbjct: 1326 GWPGPRGEPGERGPRGPKGEPGEPGRVIGGEGPGLPGQKGDPGLPGPPGS-----RGPSG 1380
Query: 373 DIH-RGPSYDPQRGL----GYDMQRGPNY--DMQRGPGYE-TQRVPGYDVQRGPV----Y 420
D RGP P + G +RGP D PG +PG +GPV
Sbjct: 1381 DPGPRGPPGFPGTAVKGEKGDRGERGPPGPGDGTAAPGDPGLPGLPGSPGPQGPVGPPGE 1440
Query: 421 EAQRAPSYIPQRG----PGYDLQRG-QGYDMRRAPSYDPSRG-TGFDGAPRGAAPHGQVP 474
+ ++ S G PG +RG +G+ P D RG TG G P G P
Sbjct: 1441 KGEKGDSEDGAPGLPGQPGVPGERGLRGFPGDTGPKGD--RGLTGAVGEPGEKGERGS-P 1497
Query: 475 PPLNNVPYGSATPPARSGSGQPRG--GNPARR 504
P+ P G P R G+ P G G RR
Sbjct: 1498 GPVG--PQGPPGVPGRPGAEGPEGPPGPTGRR 1527
Score = 127 (49.8 bits), Expect = 0.00067, P = 0.00067
Identities = 78/280 (27%), Positives = 100/280 (35%)
Query: 235 RAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSA 294
R G G E GR +G +G G+P G P G GP+
Sbjct: 1331 RGEPGERGPRGPKGEPGEPGRVIGG----EGPGLPGQKGDPGLPGPPG--SRGPSGDPGP 1384
Query: 295 YAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGP 354
G P A G GPG D + AP DP P + GP P P
Sbjct: 1385 RGPP--GFPGTAVKGEKGDRGERGPPGPG-DGTAAPG-DPGL-PGLPGSPGP-QGPVGPP 1438
Query: 355 GYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGL-GYDMQRGPNYDMQRG-------PGYET 406
G +KG + D G + P +RGL G+ GP D RG PG +
Sbjct: 1439 GEKGEKGDSEDGAPG----LPGQPGVPGERGLRGFPGDTGPKGD--RGLTGAVGEPGEKG 1492
Query: 407 QR-VPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPR 465
+R PG +GP R + P+ PG +RG+ + R P DP+ G G GA
Sbjct: 1493 ERGSPGPVGPQGPPGVPGRPGAEGPEGPPGPTGRRGEKGEPGR-PG-DPAVGPGGAGAKG 1550
Query: 466 GAAPHGQVPPPLNNVPYGSATPPARSGSGQPRG-GNPARR 504
G P G PP + G P G+P R
Sbjct: 1551 EKGDMGPTGPKGATGTKGERGPPGLALPGDPGPKGDPGER 1590
>MGI|MGI:1344412 [details] [associations]
symbol:Ldb3 "LIM domain binding 3" species:10090 "Mus
musculus" [GO:0005080 "protein kinase C binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005856 "cytoskeleton" evidence=ISO] [GO:0008092
"cytoskeletal protein binding" evidence=ISO] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0030018 "Z disc" evidence=ISO;IDA]
[GO:0042995 "cell projection" evidence=IEA] [GO:0045214 "sarcomere
organization" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051371 "muscle alpha-actinin binding"
evidence=IDA;IPI] Pfam:PF00595 Pfam:PF00412 InterPro:IPR001478
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50106
SMART:SM00132 SMART:SM00228 MGI:MGI:1344412 GO:GO:0048471
GO:GO:0005080 GO:GO:0030018 GO:GO:0005856 GO:GO:0046872
GO:GO:0008270 GO:GO:0031143 Gene3D:2.10.110.10 SUPFAM:SSF50156
CTD:11155 eggNOG:NOG286537 HOVERGEN:HBG051478 OMA:CTSQATT
OrthoDB:EOG4GTKDQ InterPro:IPR006643 SMART:SM00735 EMBL:AF114378
EMBL:AF114379 EMBL:AJ005621 EMBL:AF228057 EMBL:AF228058
EMBL:AY206011 EMBL:AY206012 EMBL:AY206013 EMBL:AY206015
EMBL:AK172980 EMBL:AK004020 EMBL:AK137181 EMBL:AK142292
EMBL:BC099596 EMBL:BC138793 EMBL:BC145420 IPI:IPI00123369
IPI:IPI00323030 IPI:IPI00403041 IPI:IPI00621572 IPI:IPI00625287
IPI:IPI00656173 RefSeq:NP_001034160.1 RefSeq:NP_001034161.1
RefSeq:NP_001034162.1 RefSeq:NP_001034163.1 RefSeq:NP_001034164.1
RefSeq:NP_001034165.1 RefSeq:NP_036048.3 UniGene:Mm.29733 PDB:1WJL
PDBsum:1WJL ProteinModelPortal:Q9JKS4 SMR:Q9JKS4 IntAct:Q9JKS4
MINT:MINT-97840 STRING:Q9JKS4 PhosphoSite:Q9JKS4 PaxDb:Q9JKS4
PRIDE:Q9JKS4 Ensembl:ENSMUST00000022327 Ensembl:ENSMUST00000022328
Ensembl:ENSMUST00000022330 Ensembl:ENSMUST00000090040 GeneID:24131
KEGG:mmu:24131 UCSC:uc007taz.1 UCSC:uc007tba.1 UCSC:uc007tbc.1
UCSC:uc007tbd.1 UCSC:uc007tbe.1 UCSC:uc007tbf.1
GeneTree:ENSGT00700000104411 InParanoid:B2RSB0
EvolutionaryTrace:Q9JKS4 NextBio:304169 Bgee:Q9JKS4 CleanEx:MM_LDB3
Genevestigator:Q9JKS4 GermOnline:ENSMUSG00000021798 Uniprot:Q9JKS4
Length = 723
Score = 141 (54.7 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 49/181 (27%), Positives = 69/181 (38%)
Query: 253 SGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPR 312
S P +Y +G P P P T + P+ A++ S +P A Y P
Sbjct: 371 SPAPSAHTSYSEGPAAP---APKPRVVTTASIR--PSVYQPVPASSYSPSP-GANYS-PT 423
Query: 313 GPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNY 372
P Y S P Y S AP+Y P+ P+Y P+ P Y P+ P Y + Y GP+
Sbjct: 424 -P-YTPSPAPAYTPSPAPTYTPSPAPTYSPSPAPAYTPSPAPNYTPTPSAAYSG--GPSE 479
Query: 373 DIHRGP-----SYDPQRGLGYDMQRGPNYDMQRG-PGYETQRVPGYDVQRGPVYEAQRAP 426
R P S+ + G + RG P Y + RG A+R P
Sbjct: 480 SASRPPWVTDDSFSQKFAPGKSTTTVSKQTLPRGAPAYNPTGPQVTPLARGTFQRAERFP 539
Query: 427 S 427
+
Sbjct: 540 A 540
Score = 135 (52.6 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 55/192 (28%), Positives = 70/192 (36%)
Query: 266 YGVPQGHGPPPSATTAGVVGAG-----PNTSTSAYAATQSGTPMRAAYDIPRGPGYEASK 320
Y P PSA T+ G P T+A P+ A+ P PG S
Sbjct: 364 YSPAAAASPAPSAHTSYSEGPAAPAPKPRVVTTASIRPSVYQPVPASSYSP-SPGANYSP 422
Query: 321 GPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSY 380
P Y S AP+Y P+ P+Y P+ P Y P+ P Y NY Y GPS
Sbjct: 423 TP-YTPSPAPAYTPSPAPTYTPSPAPTYSPSPAPAYTPSPAPNYTPTPSAAYS--GGPSE 479
Query: 381 DPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYD-LQ 439
R ++ + PG T V + RG AP+Y P GP L
Sbjct: 480 SASRP---PWVTDDSFSQKFAPGKSTTTVSKQTLPRG-------APAYNPT-GPQVTPLA 528
Query: 440 RGQGYDMRRAPS 451
RG R P+
Sbjct: 529 RGTFQRAERFPA 540
Score = 132 (51.5 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 56/213 (26%), Positives = 74/213 (34%)
Query: 277 SATTAGVVGA---GPNTSTSAYAATQSGTPMRAAY-DIPRGPGYEASKGPGY--DASKAP 330
+A+ AG + P SAY+ + +P +A+ GP A K P AS P
Sbjct: 343 AASAAGPAASPVENPRPQASAYSPAAAASPAPSAHTSYSEGPAAPAPK-PRVVTTASIRP 401
Query: 331 S-YDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYD 389
S Y P SY P+ G Y PT P Y Y P Y P+Y P Y
Sbjct: 402 SVYQPVPASSYSPSPGANYSPT--P-YTPSPAPAYTPSPAPTYTPSPAPTYSPSPAPAYT 458
Query: 390 MQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRR- 448
PNY Y P R P S+ + PG + R
Sbjct: 459 PSPAPNYTPTPSAAYSGG--PSESASRPPWVTDD---SFSQKFAPGKSTTTVSKQTLPRG 513
Query: 449 APSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVP 481
AP+Y+P+ G RG + P + P
Sbjct: 514 APAYNPT-GPQVTPLARGTFQRAERFPASSRTP 545
>UNIPROTKB|O75112 [details] [associations]
symbol:LDB3 "LIM domain-binding protein 3" species:9606
"Homo sapiens" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005080 "protein kinase C binding" evidence=IEA] [GO:0031143
"pseudopodium" evidence=IEA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005856 "cytoskeleton" evidence=IDA] [GO:0008092
"cytoskeletal protein binding" evidence=IPI] [GO:0030018 "Z disc"
evidence=IDA] Pfam:PF00595 Pfam:PF00412 InterPro:IPR001478
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50106
SMART:SM00132 SMART:SM00228 GO:GO:0048471 GO:GO:0030018
GO:GO:0005856 GO:GO:0046872 GO:GO:0008270 Orphanet:154
GO:GO:0031143 Gene3D:2.10.110.10 Orphanet:54260 SUPFAM:SSF50156
EMBL:AJ133766 EMBL:AJ133767 EMBL:AJ133768 EMBL:AF276807
EMBL:AF276808 EMBL:AF276809 EMBL:AB014513 EMBL:AK304760
EMBL:EF179181 EMBL:AC067750 EMBL:BC010929 IPI:IPI00165263
IPI:IPI00294958 IPI:IPI00294959 IPI:IPI00514458 IPI:IPI00552865
IPI:IPI00654766 IPI:IPI00909817 RefSeq:NP_001073583.1
RefSeq:NP_001073584.1 RefSeq:NP_001073585.1 RefSeq:NP_001165081.1
RefSeq:NP_001165082.1 RefSeq:NP_009009.1 UniGene:Hs.657271 PDB:1RGW
PDBsum:1RGW ProteinModelPortal:O75112 SMR:O75112 IntAct:O75112
STRING:O75112 PhosphoSite:O75112 UCD-2DPAGE:O75112
UCD-2DPAGE:Q9Y4Z5 PaxDb:O75112 PRIDE:O75112 DNASU:11155
Ensembl:ENST00000263066 Ensembl:ENST00000310944
Ensembl:ENST00000352360 Ensembl:ENST00000361373
Ensembl:ENST00000372056 Ensembl:ENST00000372066
Ensembl:ENST00000429277 Ensembl:ENST00000458213
Ensembl:ENST00000542786 GeneID:11155 KEGG:hsa:11155 UCSC:uc001kdr.3
UCSC:uc001kds.3 UCSC:uc001kdu.3 UCSC:uc001kdv.3 UCSC:uc009xsy.3
UCSC:uc009xsz.3 CTD:11155 GeneCards:GC10P088426 HGNC:HGNC:15710
HPA:HPA048955 MIM:601493 MIM:605906 MIM:609452 neXtProt:NX_O75112
Orphanet:247 Orphanet:609 Orphanet:98912 PharmGKB:PA30318
eggNOG:NOG286537 HOGENOM:HOG000220936 HOVERGEN:HBG051478
InParanoid:O75112 OMA:CTSQATT OrthoDB:EOG4GTKDQ ChiTaRS:LDB3
EvolutionaryTrace:O75112 GenomeRNAi:11155 NextBio:42413
ArrayExpress:O75112 Bgee:O75112 Genevestigator:O75112
GermOnline:ENSG00000122367 InterPro:IPR006643 SMART:SM00735
Uniprot:O75112
Length = 727
Score = 141 (54.7 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 53/183 (28%), Positives = 72/183 (39%)
Query: 253 SGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPR 312
S P +Y +G P P P T + P+ A+T S +P A Y P
Sbjct: 375 SSAPATHTSYSEGPAAP---APKPRVVTTASIR--PSVYQPVPASTYSPSP-GANYS-PT 427
Query: 313 GPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNY 372
P Y S P Y S AP+Y P+ P+Y P+ P Y P+ P Y+ Y GP
Sbjct: 428 -P-YTPSPAPAYTPSPAPAYTPSPVPTYTPSPAPAYTPSPAPNYNPAPSVAYSG--GPAE 483
Query: 373 DIHRGP-----SYDPQRGLGYDMQRGPNYDMQRG-PGYETQ--RVPGYDVQRGPVYEAQR 424
R P S+ + G + RG P Y +VP + RG V A+R
Sbjct: 484 PASRPPWVTDDSFSQKFAPGKSTTSISKQTLPRGGPAYTPAGPQVP--PLARGTVQRAER 541
Query: 425 APS 427
P+
Sbjct: 542 FPA 544
>UNIPROTKB|G7N928 [details] [associations]
symbol:EGK_04858 "Putative uncharacterized protein"
species:9544 "Macaca mulatta" [GO:0005201 "extracellular matrix
structural constituent" evidence=ISS] [GO:0005587 "collagen type
IV" evidence=ISS] [GO:0005605 "basal lamina" evidence=ISS]
[GO:0032836 "glomerular basement membrane development"
evidence=ISS] InterPro:IPR001442 Pfam:PF01413 PROSITE:PS51403
SMART:SM00111 InterPro:IPR016187 SUPFAM:SSF56436 GO:GO:0005605
InterPro:IPR008160 Pfam:PF01391 GO:GO:0005201 GO:GO:0005587
Gene3D:2.170.240.10 GO:GO:0032836 EMBL:CM001264 Uniprot:G7N928
Length = 1692
Score = 145 (56.1 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 81/261 (31%), Positives = 100/261 (38%)
Query: 254 GRPVGQNA-YEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPR 312
G V N Y G P GPP G GA P S S + GTP +IP
Sbjct: 663 GDTVSCNVTYPGRQGPPGFDGPPGPKGFPGPQGA-PGLSGSDGHKGRPGTP--GTSEIPG 719
Query: 313 GPGYEASKG-PGYDASKAPSYDPTKGPSYDPA----KG-PGYDPTKGP-GYDAQKG-SNY 364
PG+ G PG+ K S GP P KG PG DP G G ++G S
Sbjct: 720 PPGFRGDIGDPGFGGEKGSSPVGPPGPPGSPGVNGQKGIPG-DPAFGHLGPPGKRGLSGV 778
Query: 365 DAQRGPNYDIHRGPSYDPQRGL-GYDMQRGPN-YDMQRG-PGYETQRVPGYDVQRG-PVY 420
+GP D P + G+ G+ +GP + G PG PG+ +RG P
Sbjct: 779 PGIKGPRGDPGY-PGAEGPAGIPGFPGLKGPKGREGHAGFPGVPGP--PGHSCERGAPGI 835
Query: 421 EAQRAPSYIPQRG-PGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNN 479
Q P G PG +GQ D+ P P+ G G P HG PP L
Sbjct: 836 PGQ--PGLPGDPGSPGAPGGKGQPGDV--GPP-GPAGMKGLPGLPGRPGAHG--PPGLPG 888
Query: 480 VP--YGSATPPARSGSGQPRG 498
+P +G P G PRG
Sbjct: 889 IPGPFGDDGLPGPPGPKGPRG 909
Score = 141 (54.7 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 77/252 (30%), Positives = 97/252 (38%)
Query: 270 QGH-GPPPSATTAGVVGA-GPNTSTSAYAATQSGTPMRAAYDIPRGP-GYEASKG-PGYD 325
+GH G P G G G T + T G +D P GP G+ +G PG
Sbjct: 641 RGHPGVPGRPGVRGPDGLKGQKGDTVSCNVTYPGRQGPPGFDGPPGPKGFPGPQGAPGLS 700
Query: 326 ASKAPSYDP-TKGPSYDPAKGPGYDPTKG-PGYDAQKGSNYDAQRGP----NYDIHRGPS 379
S P T G S P PG+ G PG+ +KGS+ GP + +G
Sbjct: 701 GSDGHKGRPGTPGTSEIPGP-PGFRGDIGDPGFGGEKGSSPVGPPGPPGSPGVNGQKGIP 759
Query: 380 YDPQRG-LGYDMQRG----PNYDMQRG-PGYETQR----VPGYDVQRGPVYEAQRA--PS 427
DP G LG +RG P RG PGY +PG+ +GP A P
Sbjct: 760 GDPAFGHLGPPGKRGLSGVPGIKGPRGDPGYPGAEGPAGIPGFPGLKGPKGREGHAGFPG 819
Query: 428 YIPQRGPGYDLQRGQ-GYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSAT 486
+P PG+ +RG G + DP G GAP G G V PP G
Sbjct: 820 -VPGP-PGHSCERGAPGIPGQPGLPGDP----GSPGAPGGKGQPGDVGPPGPAGMKGLPG 873
Query: 487 PPARSGSGQPRG 498
P R G+ P G
Sbjct: 874 LPGRPGAHGPPG 885
Score = 124 (48.7 bits), Expect = 0.00077, P = 0.00077
Identities = 81/259 (31%), Positives = 100/259 (38%)
Query: 256 PVGQNAYEDGY-GVP--QGH-GPPPSATTAGVVGA-GPNTSTSAYAATQSGTPMRAAYDI 310
PVG G+ G P +GH G P G G G T + T G +D
Sbjct: 626 PVGPPGL--GFPGPPGERGHPGVPGRPGVRGPDGLKGQKGDTVSCNVTYPGRQGPPGFDG 683
Query: 311 PRGP-GYEASKG-PGYDASKAPSYDP-TKGPSYDPAKGPGYDPTKG-PGYDAQKGSNYDA 366
P GP G+ +G PG S P T G S P PG+ G PG+ +KGS+
Sbjct: 684 PPGPKGFPGPQGAPGLSGSDGHKGRPGTPGTSEIPGP-PGFRGDIGDPGFGGEKGSSPVG 742
Query: 367 QRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYE-TQRVPGYDVQRG-PVYEAQR 424
GP P + Q+G+ D P + PG VPG RG P Y
Sbjct: 743 PPGPP----GSPGVNGQKGIPGD----PAFGHLGPPGKRGLSGVPGIKGPRGDPGYPGAE 794
Query: 425 APSYIPQRGPGYDLQRG-QGYDMRRAPSYDPSRGTGFD-GAPRGAAPHGQVPPPLNNVPY 482
P+ IP PG +G +G+ P G + GAP P GQ P L P
Sbjct: 795 GPAGIPGF-PGLKGPKGREGH--AGFPGVPGPPGHSCERGAP--GIP-GQ--PGLPGDP- 845
Query: 483 GSATPPARSGSGQPRGGNP 501
GS P A G GQP P
Sbjct: 846 GS--PGAPGGKGQPGDVGP 862
>UNIPROTKB|G7PK77 [details] [associations]
symbol:EGM_04376 "Putative uncharacterized protein"
species:9541 "Macaca fascicularis" [GO:0005201 "extracellular
matrix structural constituent" evidence=ISS] [GO:0005587 "collagen
type IV" evidence=ISS] [GO:0005605 "basal lamina" evidence=ISS]
[GO:0032836 "glomerular basement membrane development"
evidence=ISS] InterPro:IPR001442 Pfam:PF01413 PROSITE:PS51403
SMART:SM00111 InterPro:IPR016187 SUPFAM:SSF56436 GO:GO:0005605
InterPro:IPR008160 Pfam:PF01391 GO:GO:0005201 GO:GO:0005587
Gene3D:2.170.240.10 GO:GO:0032836 EMBL:CM001287 Uniprot:G7PK77
Length = 1695
Score = 145 (56.1 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 81/261 (31%), Positives = 100/261 (38%)
Query: 254 GRPVGQNA-YEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPR 312
G V N Y G P GPP G GA P S S + GTP +IP
Sbjct: 663 GDTVSCNVTYPGRQGPPGFDGPPGPKGFPGPQGA-PGLSGSDGHKGRPGTP--GTSEIPG 719
Query: 313 GPGYEASKG-PGYDASKAPSYDPTKGPSYDPA----KG-PGYDPTKGP-GYDAQKG-SNY 364
PG+ G PG+ K S GP P KG PG DP G G ++G S
Sbjct: 720 PPGFRGDIGDPGFGGEKGSSPVGPPGPPGSPGVNGQKGIPG-DPAFGHLGPPGKRGLSGV 778
Query: 365 DAQRGPNYDIHRGPSYDPQRGL-GYDMQRGPN-YDMQRG-PGYETQRVPGYDVQRG-PVY 420
+GP D P + G+ G+ +GP + G PG PG+ +RG P
Sbjct: 779 PGIKGPRGDPGY-PGAEGPAGIPGFPGLKGPKGREGHAGFPGVPGP--PGHSCERGAPGI 835
Query: 421 EAQRAPSYIPQRG-PGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNN 479
Q P G PG +GQ D+ P P+ G G P HG PP L
Sbjct: 836 PGQ--PGLPGDPGSPGAPGGKGQPGDV--GPP-GPAGMKGLPGLPGRPGAHG--PPGLPG 888
Query: 480 VP--YGSATPPARSGSGQPRG 498
+P +G P G PRG
Sbjct: 889 IPGPFGDDGLPGPPGPKGPRG 909
Score = 141 (54.7 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 77/252 (30%), Positives = 97/252 (38%)
Query: 270 QGH-GPPPSATTAGVVGA-GPNTSTSAYAATQSGTPMRAAYDIPRGP-GYEASKG-PGYD 325
+GH G P G G G T + T G +D P GP G+ +G PG
Sbjct: 641 RGHPGVPGRPGVRGPDGLKGQKGDTVSCNVTYPGRQGPPGFDGPPGPKGFPGPQGAPGLS 700
Query: 326 ASKAPSYDP-TKGPSYDPAKGPGYDPTKG-PGYDAQKGSNYDAQRGP----NYDIHRGPS 379
S P T G S P PG+ G PG+ +KGS+ GP + +G
Sbjct: 701 GSDGHKGRPGTPGTSEIPGP-PGFRGDIGDPGFGGEKGSSPVGPPGPPGSPGVNGQKGIP 759
Query: 380 YDPQRG-LGYDMQRG----PNYDMQRG-PGYETQR----VPGYDVQRGPVYEAQRA--PS 427
DP G LG +RG P RG PGY +PG+ +GP A P
Sbjct: 760 GDPAFGHLGPPGKRGLSGVPGIKGPRGDPGYPGAEGPAGIPGFPGLKGPKGREGHAGFPG 819
Query: 428 YIPQRGPGYDLQRGQ-GYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSAT 486
+P PG+ +RG G + DP G GAP G G V PP G
Sbjct: 820 -VPGP-PGHSCERGAPGIPGQPGLPGDP----GSPGAPGGKGQPGDVGPPGPAGMKGLPG 873
Query: 487 PPARSGSGQPRG 498
P R G+ P G
Sbjct: 874 LPGRPGAHGPPG 885
Score = 124 (48.7 bits), Expect = 0.00077, P = 0.00077
Identities = 81/259 (31%), Positives = 100/259 (38%)
Query: 256 PVGQNAYEDGY-GVP--QGH-GPPPSATTAGVVGA-GPNTSTSAYAATQSGTPMRAAYDI 310
PVG G+ G P +GH G P G G G T + T G +D
Sbjct: 626 PVGPPGL--GFPGPPGERGHPGVPGRPGVRGPDGLKGQKGDTVSCNVTYPGRQGPPGFDG 683
Query: 311 PRGP-GYEASKG-PGYDASKAPSYDP-TKGPSYDPAKGPGYDPTKG-PGYDAQKGSNYDA 366
P GP G+ +G PG S P T G S P PG+ G PG+ +KGS+
Sbjct: 684 PPGPKGFPGPQGAPGLSGSDGHKGRPGTPGTSEIPGP-PGFRGDIGDPGFGGEKGSSPVG 742
Query: 367 QRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYE-TQRVPGYDVQRG-PVYEAQR 424
GP P + Q+G+ D P + PG VPG RG P Y
Sbjct: 743 PPGPP----GSPGVNGQKGIPGD----PAFGHLGPPGKRGLSGVPGIKGPRGDPGYPGAE 794
Query: 425 APSYIPQRGPGYDLQRG-QGYDMRRAPSYDPSRGTGFD-GAPRGAAPHGQVPPPLNNVPY 482
P+ IP PG +G +G+ P G + GAP P GQ P L P
Sbjct: 795 GPAGIPGF-PGLKGPKGREGH--AGFPGVPGPPGHSCERGAP--GIP-GQ--PGLPGDP- 845
Query: 483 GSATPPARSGSGQPRGGNP 501
GS P A G GQP P
Sbjct: 846 GS--PGAPGGKGQPGDVGP 862
>UNIPROTKB|P04258 [details] [associations]
symbol:COL3A1 "Collagen alpha-1(III) chain" species:9913
"Bos taurus" [GO:0005581 "collagen" evidence=IEA] PROSITE:PS01208
GO:GO:0005581 InterPro:IPR008160 Pfam:PF01391 eggNOG:NOG12793
HOGENOM:HOG000085654 HOVERGEN:HBG004933 IPI:IPI00731432 PIR:A02862
UniGene:Bt.64714 STRING:P04258 PRIDE:P04258 Uniprot:P04258
Length = 1049
Score = 142 (55.0 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 82/262 (31%), Positives = 97/262 (37%)
Query: 253 SGRPVGQNAYEDGYGVPQ---GHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYD 309
SG P G+ G P G GPP G G P SA G P
Sbjct: 521 SGAP-GERGPPGAGGPPGPRGGAGPPGPEGGKGAAGP-PGPPGSAGTPGLQGMPGERGG- 577
Query: 310 IPRGPGYEASKG-PGYDA-SKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQ 367
P GPG + KG PG AP D +GP+ P PG P PG + G+
Sbjct: 578 -PGGPGPKGDKGEPGSSGVDGAPGKDGPRGPT-GPIGPPG--PAGQPGDKGESGA----- 628
Query: 368 RGPNYDIHRGPSYDP-QRG-LGYDMQRG-PNYDMQRG-PGYETQR-VPGYDVQRGPVYEA 422
P GP P +RG G G P Q G PG + +R PG + GP A
Sbjct: 629 --PGVPGIAGPRGGPGERGEQGPPGPAGFPGAPGQNGEPGAKGERGAPGEKGEGGPPGAA 686
Query: 423 QRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPY 482
A P PG +G+ R +P G G G P G P G PP N P
Sbjct: 687 GPAGGSGPAGPPGPQGVKGE----RGSPG-----GPGAAGFPGGRGPPG--PPGSNGNPG 735
Query: 483 --GSATPPARSGSGQPRGGNPA 502
GS+ P + G P G N A
Sbjct: 736 PPGSSGAPGKDGPPGPPGSNGA 757
Score = 141 (54.7 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 88/294 (29%), Positives = 106/294 (36%)
Query: 229 APNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGA-G 287
A +V A G G G + P G + + G P GPP AG G G
Sbjct: 4 AYDVKSGVAGGGIAGYPGPAGPPGPPGPPGTSGHPGAPGAPGYQGPPGEPGQAGPAGPPG 63
Query: 288 PNTSTSAYAAT-QSGTPMRAAYDIPRG-PGYEASKGP----GYDASKAP-SYDPTKGPSY 340
P + +SG P R PRG PG KGP G+ K +D G
Sbjct: 64 PPGAIGPSGKDGESGRPGRPG---PRGFPGPPGMKGPAGMPGFPGMKGHRGFDGRNGEKG 120
Query: 341 DPAKGPGYDPTKG-PGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGL-GYDMQRGPNYDM 398
+P PG G PG D G RG + R P G G D RG D
Sbjct: 121 EPG-APGLKGENGVPGEDGAPGPM--GPRGAPGERGR-PGLPGAAGARGNDGARGS--DG 174
Query: 399 QRGP-GYE-TQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSR 456
Q GP G T PG +G V A S PG QRG+ A + P
Sbjct: 175 QPGPPGPPGTAGFPGSPGAKGEVGPAGSPGS---SGAPG---QRGEPGPQGHAGAPGPPG 228
Query: 457 GTGFDGAPRGAAPHGQVPPPLNNVP--YGSATPPARSGS-GQP--RG--GNPAR 503
G DG+P G G P + P G+ PP G+ G P RG G P +
Sbjct: 229 PPGSDGSPGGKGEMG--PAGIPGAPGLIGARGPPGPPGTNGVPGQRGAAGEPGK 280
Score = 121 (47.7 bits), Expect = 0.00094, P = 0.00094
Identities = 83/282 (29%), Positives = 99/282 (35%)
Query: 238 DGSYG--GATG----NSENETSG-R-PVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPN 289
DGS G GA G E G R P G N G P G P A GV G P
Sbjct: 311 DGSPGEPGANGLPGAAGERGVPGFRGPAGANGLPGEKGPPGDRGGPGPAGPRGVAGE-PG 369
Query: 290 TSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYD 349
+ G +R P GPG GP + P P P PG
Sbjct: 370 RN-----GLPGGPGLRGIPGSPGGPGSNGKPGPPGSQGETGRPGPPGSPG--PRGQPGVM 422
Query: 350 PTKGP-GYDAQKGSNYDAQRGPNYDIHRGPS-YDPQRG-LGYDMQRGPNYDM-QRGPGYE 405
GP G D G N + + GP +GP+ + + G G GP+ D GP
Sbjct: 423 GFPGPKGNDGAPGKNGE-RGGPGGPGPQGPAGKNGETGPQGPPGPTGPSGDKGDTGPP-G 480
Query: 406 TQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYD-LQRGQGYDMRRAPSYDPSRGTGFDGAP 464
Q + G GP E + P+ G + G+G D AP RG G P
Sbjct: 481 PQGLQGLPGTSGPPGENGKPGEPGPKGEAGAPGIPGGKG-DSG-APG---ERGPPGAGGP 535
Query: 465 RGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRG--GNPARR 504
G P G PP G+A PP GS G G P R
Sbjct: 536 PG--PRGGAGPPGPEGGKGAAGPPGPPGSAGTPGLQGMPGER 575
>UNIPROTKB|C9JGE3 [details] [associations]
symbol:EWSR1 "Ewing sarcoma breakpoint region 1, isoform
CRA_e" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR012677 Pfam:PF00641 PROSITE:PS01358 PROSITE:PS50102
PROSITE:PS50199 SMART:SM00360 SMART:SM00547 GO:GO:0000166
EMBL:CH471095 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 EMBL:AC002059 EMBL:AL031186 EMBL:AC000026
UniGene:Hs.374477 HGNC:HGNC:3508 HOGENOM:HOG000038010 ChiTaRS:EWSR1
IPI:IPI00953325 SMR:C9JGE3 STRING:C9JGE3 Ensembl:ENST00000332050
UCSC:uc003aez.3 Uniprot:C9JGE3
Length = 583
Score = 127 (49.8 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 68/254 (26%), Positives = 95/254 (37%)
Query: 239 GSYGGATGNSENETSGRPV-GQNAYEDGYGVPQ-GHGPP--PSATTAGVVGAGP---NTS 291
G+YG T S + GQ AY YG P G+ P P A + V G G +T+
Sbjct: 42 GTYGQPTDVSYTQAQTTATYGQTAYATSYGQPPTGYTTPTAPQAYSQPVQGYGTGAYDTT 101
Query: 292 TSAYAATQSGTPMRAAYDI-PRGPGYEASKGPGYDASKAPS--YDPTKGPSYDPAKGPGY 348
T+ TQ+ ++AY P P Y + P A P PT+ + G GY
Sbjct: 102 TATVTTTQASYAAQSAYGTQPAYPAY--GQQPAATAPTRPQDGNKPTETSQPQSSTG-GY 158
Query: 349 D-PTKGPGYDAQKGSNYDAQRG--PNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYE 405
+ P+ G G Q +Y G P + PSY P Y + +YD Y
Sbjct: 159 NQPSLGYG---QSNYSYPQVPGSYPMQPVTAPPSYPPT---SYSSTQPTSYDQS---SYS 209
Query: 406 TQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGF-DGAP 464
Q G G + SY Q Y Q G Y +APS + + + P
Sbjct: 210 QQNTYGQPSSYGQQSSYGQQSSYGQQPPTSYPPQTGS-YS--QAPSQYSQQSSSYGQQRP 266
Query: 465 RGAAPHGQVPPPLN 478
P + PP++
Sbjct: 267 MDEGPDLDLGPPVD 280
Score = 57 (25.1 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 19/46 (41%), Positives = 21/46 (45%)
Query: 465 RGAAP--HGQ-VPPPLNNVPYGSATP--PA--RSGSGQPRGGNPAR 503
RG P G+ +PPPL P G P P G G RGG P R
Sbjct: 382 RGGLPPREGRGMPPPLRGGPGGPGGPGGPMGRMGGRGGDRGGFPPR 427
>UNIPROTKB|G4N3H5 [details] [associations]
symbol:MGG_04961 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] EMBL:CM001233
RefSeq:XP_003712457.1 EnsemblFungi:MGG_04961T0 GeneID:2675293
KEGG:mgr:MGG_04961 Uniprot:G4N3H5
Length = 616
Score = 139 (54.0 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 58/167 (34%), Positives = 76/167 (45%)
Query: 249 ENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSG--TPMRA 306
++ +SGR + G P G PP + TA + GP+ AY +G +P +
Sbjct: 463 DDYSSGRASPAPSMYPSRG-PGGPNMPPRSATAPIPPRGPD----AYDDYSNGRASPAPS 517
Query: 307 AYDIPRGPGYEASKGPGYDASKAPS-YDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYD 365
Y PRGPG GP AS APS Y+P + P A GP P +GPG+ Q+
Sbjct: 518 MYP-PRGPG-----GPNGRASPAPSMYNPPRAPPQRSATGPM--PPRGPGFPPQRNMTAP 569
Query: 366 AQRGPN--YDIHRGP----SYDPQRGLGYDMQRGPNYDM--QRG-PG 403
A GP+ YD + P S P RG G N D+ QRG PG
Sbjct: 570 AP-GPDDPYDYNTRPPTSSSQAPPRGA---FGNGWNSDLENQRGGPG 612
Score = 126 (49.4 bits), Expect = 0.00014, P = 0.00014
Identities = 76/272 (27%), Positives = 91/272 (33%)
Query: 239 GSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAAT 298
G+ G NS ++ P Q Y Q P A G + + S +
Sbjct: 347 GTPGSIELNSLDQKRPMPSRQGTMNSSYSSRQ-----PLVGAAAEFGRSASPAPSIPSTN 401
Query: 299 QSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDA 358
SG + R +S Y AS AP T P+ P PGY + PG
Sbjct: 402 YSGRTYGGQPPMSRMQSNASSMSRAYTASPAPFSSDTV-PAL-PR--PGYQRNQ-PGGPP 456
Query: 359 QKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVP-GYD-VQR 416
+ +YD PS P RG G GPN + R P YD
Sbjct: 457 SRFDSYDDYSSGRAS--PAPSMYPSRGPG-----GPNMPPRSATAPIPPRGPDAYDDYSN 509
Query: 417 GPVYEAQRAPSYIPQRGPGYDLQRGQ-GYDMRRAPSYDPSRGTGFDGAPRGAA--PHGQV 473
G A APS P RGPG R M P P R PRG P +
Sbjct: 510 G---RASPAPSMYPPRGPGGPNGRASPAPSMYNPPRAPPQRSATGPMPPRGPGFPPQRNM 566
Query: 474 --PPPLNNVPYGSAT-PPARSGSGQPRG--GN 500
P P + PY T PP S PRG GN
Sbjct: 567 TAPAPGPDDPYDYNTRPPTSSSQAPPRGAFGN 598
>UNIPROTKB|E2R2K8 [details] [associations]
symbol:PPP1R10 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000571 InterPro:IPR003617
InterPro:IPR017923 Pfam:PF00642 Pfam:PF08711 PROSITE:PS50103
PROSITE:PS51319 SMART:SM00356 SMART:SM00509 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:1.20.930.10
SUPFAM:SSF47676 CTD:5514 OMA:PPPHEHR GeneTree:ENSGT00530000063820
EMBL:AAEX03008197 RefSeq:XP_848400.1 Ensembl:ENSCAFT00000000645
Ensembl:ENSCAFT00000048295 GeneID:481705 KEGG:cfa:481705
NextBio:20856447 Uniprot:E2R2K8
Length = 940
Score = 141 (54.7 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 68/268 (25%), Positives = 87/268 (32%)
Query: 239 GSYGGATGNSENETSGRPV---GQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAY 295
G +GG G+ G P G + + DG G P GP G G GP
Sbjct: 653 GPHGGPGGSVGPRLLGPPPPPRGGDPFWDGPGDPMRGGP-----MRGGPGPGPGPYHRGR 707
Query: 296 AATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPG 355
P P P + ++G G P+ GP G G+ P +GPG
Sbjct: 708 GGRGGNEPP------PPPPPFRGARG-GRSGGGPPN--GRGGPGGGMVGGGGHRPHEGPG 758
Query: 356 YDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQ 415
S + GP + G + P G G M G + GPG G+
Sbjct: 759 GGMNSSSGHRPHEGPGGGM--GGGHRPHEGPGSSMGGGGGHRPHEGPGGGMGSGSGHRPH 816
Query: 416 RGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPP 475
GP + P GPG + G G+ P G G G P G PH VP
Sbjct: 817 EGPGSGMGGGSGHRPHEGPGGGMGAGGGHR--------PHEGPGH-GGPHGHRPH-DVPS 866
Query: 476 PLNNVPYGSATPPARSGSGQPRGGNPAR 503
+ G R G GG R
Sbjct: 867 HRGHDHRGPPPHEHRGHDGPGHGGGGHR 894
Score = 139 (54.0 bits), Expect = 9.2e-06, P = 9.2e-06
Identities = 56/215 (26%), Positives = 74/215 (34%)
Query: 243 GATGNSENETSGRPV-GQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSG 301
G G +E P G G G P G G P G G P+ + SG
Sbjct: 708 GGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGG-GHRPHEGPGGGMNSSSG 766
Query: 302 TPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKG 361
G G+ +GPG + P +GP G G+ P +GPG G
Sbjct: 767 HRPHEGPGGGMGGGHRPHEGPGSSMGGGGGHRPHEGPGGGMGSGSGHRPHEGPGSGMGGG 826
Query: 362 SNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVP---GYDVQRGP 418
S + GP + G + P G G+ GP+ G+ VP G+D RGP
Sbjct: 827 SGHRPHEGPGGGMGAGGGHRPHEGPGHG---GPH-------GHRPHDVPSHRGHD-HRGP 875
Query: 419 VYEAQRA---PSYIPQRGPGYDLQRGQGYDMRRAP 450
R P + G+D G DM P
Sbjct: 876 PPHEHRGHDGPGHGGGGHRGHDGGHSHGGDMSNRP 910
>FB|FBgn0261885 [details] [associations]
symbol:osa "osa" species:7227 "Drosophila melanogaster"
[GO:0046530 "photoreceptor cell differentiation" evidence=IMP]
[GO:0005634 "nucleus" evidence=NAS;IDA] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IMP] [GO:0008587 "imaginal disc-derived
wing margin morphogenesis" evidence=IMP] [GO:0007379 "segment
specification" evidence=IMP] [GO:0003677 "DNA binding"
evidence=ISS;IDA;NAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IDA;IMP] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=IDA] [GO:0035060 "brahma
complex" evidence=IDA;TAS] [GO:0003713 "transcription coactivator
activity" evidence=IC] [GO:0007476 "imaginal disc-derived wing
morphogenesis" evidence=IMP] [GO:0048190 "wing disc dorsal/ventral
pattern formation" evidence=IGI] [GO:0042058 "regulation of
epidermal growth factor receptor signaling pathway" evidence=IMP]
[GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IMP]
[GO:0008586 "imaginal disc-derived wing vein morphogenesis"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001606 Pfam:PF01388 PROSITE:PS51011 SMART:SM00501
EMBL:AE014297 GO:GO:0048190 GO:GO:0045893 GO:GO:0016055
GO:GO:0003677 GO:GO:0008586 GO:GO:0006351 GO:GO:0016568
eggNOG:NOG12793 GO:GO:0007379 GO:GO:0007480 KO:K11653
Gene3D:1.10.150.60 InterPro:IPR021906 Pfam:PF12031 SUPFAM:SSF46774
GeneTree:ENSGT00550000074575 GO:GO:0046530 GO:GO:0008587
GO:GO:0035060 GO:GO:0042058 EMBL:AF053091 PIR:T13049
RefSeq:NP_001163639.1 RefSeq:NP_524392.2 RefSeq:NP_732263.1
UniGene:Dm.2989 ProteinModelPortal:Q8IN94 SMR:Q8IN94 DIP:DIP-20699N
IntAct:Q8IN94 MINT:MINT-297379 STRING:Q8IN94 PaxDb:Q8IN94
PRIDE:Q8IN94 EnsemblMetazoa:FBtr0089581 EnsemblMetazoa:FBtr0301487
GeneID:42130 KEGG:dme:Dmel_CG7467 CTD:42130 FlyBase:FBgn0261885
InParanoid:Q8IN94 OMA:SQMGQGP OrthoDB:EOG4MCVF9 PhylomeDB:Q8IN94
ChiTaRS:osa GenomeRNAi:42130 NextBio:827314 Bgee:Q8IN94
GermOnline:CG7467 Uniprot:Q8IN94
Length = 2716
Score = 153 (58.9 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 92/349 (26%), Positives = 133/349 (38%)
Query: 170 IPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 229
I A S +LR+ H+ + +E F ++ L ++++ + +K A+ +
Sbjct: 1065 IGASSSAAYTLRK--HYTKNLLTFECHFDRGDIDPLPIIQQ----VEAGSKKKTAKAASV 1118
Query: 230 PNVDRRAADGSYGGATGNSENETS-GRPVGQ--NAYEDGY-GVPQGHGPPPSATTAGVVG 285
P+ D +TG+S ++ S P G NA DGY G P G P P A+ G
Sbjct: 1119 PSPGGGHLDAGTTNSTGSSNSQDSFPAPPGSAPNAAIDGYPGYPGG-SPYPVAS-----G 1172
Query: 286 AGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKA-PSYDPTK---GPSYD 341
P+ +T A P + P PG A+ G + S + P DP GP
Sbjct: 1173 PQPDYAT---AGQMQRPPSQNNPQTPH-PGAAAAVAAGDNISVSNPFEDPIAAGGGPGSG 1228
Query: 342 PAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDP----QRGLGYDMQRGPNYD 397
GPG P GPG A G+ G H P + P Q+ G Q+ P +
Sbjct: 1229 TGPGPGQGP--GPGA-ASGGAGAVGAVGGGPQPHPPPPHSPHTAAQQAAGQHQQQHPQHQ 1285
Query: 398 MQRGPGYET-QRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSR 456
PG Q+ G Q+ P P Q GPG Q + A + P
Sbjct: 1286 HPGLPGPPPPQQQQGQQGQQPPPSVGGGPPPAPQQHGPGQVPPSPQQHVRPAAGAPYPPG 1345
Query: 457 GTGFDGAPRGAAPHGQVPP-PLNNVPYGSATPPARSGS-GQPRGGNPAR 503
G+G+ P P P P YGS+ +G GQP G P +
Sbjct: 1346 GSGYP-TPVSRTPGSPYPSQPGAYGQYGSSDQYNATGPPGQPFGQGPGQ 1393
Score = 44 (20.5 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 34 PMPGAFPPFDMMPPPE 49
P+PG PP P P+
Sbjct: 166 PLPGGKPPQQQQPHPQ 181
Score = 43 (20.2 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 30 GMRPPMPGAFPPFDMMPP 47
GM P G +PP+ +PP
Sbjct: 706 GM-PNHTGQYPPYQWVPP 722
Score = 43 (20.2 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 29 SGMRP--PMPGAFPPFDMMPPPE 49
+G +P P+PG PP PP+
Sbjct: 344 AGQQPGGPVPGGPPPGTGQQPPQ 366
Score = 42 (19.8 bits), Expect = 9.9e-06, Sum P(2) = 9.9e-06
Identities = 7/16 (43%), Positives = 7/16 (43%)
Query: 33 PPMPGAFPPFDMMPPP 48
P P PP PPP
Sbjct: 427 PASPHHVPPLQQQPPP 442
Score = 39 (18.8 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 30 GMRPPMPGAFPPFDMMPPPE 49
G P P +PP + P P+
Sbjct: 648 GYPPQQPQQYPPGNYPPRPQ 667
Score = 38 (18.4 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 9/20 (45%), Positives = 9/20 (45%)
Query: 28 VSGMRPPMPGAFPPFDMMPP 47
V G PP G PP PP
Sbjct: 352 VPGGPPPGTGQQPPQQNTPP 371
Score = 37 (18.1 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 36 PGAFPPFDMMPP 47
PG +PP PP
Sbjct: 659 PGNYPPRPQYPP 670
>UNIPROTKB|F1MXS8 [details] [associations]
symbol:COL3A1 "Collagen alpha-1(III) chain" species:9913
"Bos taurus" [GO:0071230 "cellular response to amino acid stimulus"
evidence=IEA] [GO:0050777 "negative regulation of immune response"
evidence=IEA] [GO:0048565 "digestive tract development"
evidence=IEA] [GO:0048407 "platelet-derived growth factor binding"
evidence=IEA] [GO:0046332 "SMAD binding" evidence=IEA] [GO:0043588
"skin development" evidence=IEA] [GO:0043206 "extracellular fibril
organization" evidence=IEA] [GO:0042060 "wound healing"
evidence=IEA] [GO:0034097 "response to cytokine stimulus"
evidence=IEA] [GO:0032964 "collagen biosynthetic process"
evidence=IEA] [GO:0030199 "collagen fibril organization"
evidence=IEA] [GO:0018149 "peptide cross-linking" evidence=IEA]
[GO:0009314 "response to radiation" evidence=IEA] [GO:0007507
"heart development" evidence=IEA] [GO:0007229 "integrin-mediated
signaling pathway" evidence=IEA] [GO:0007179 "transforming growth
factor beta receptor signaling pathway" evidence=IEA] [GO:0007160
"cell-matrix adhesion" evidence=IEA] [GO:0005615 "extracellular
space" evidence=IEA] [GO:0005586 "collagen type III" evidence=IEA]
[GO:0005201 "extracellular matrix structural constituent"
evidence=IEA] [GO:0001568 "blood vessel development" evidence=IEA]
InterPro:IPR000885 InterPro:IPR001007 Pfam:PF00093 Pfam:PF01410
ProDom:PD002078 PROSITE:PS01208 PROSITE:PS50184 PROSITE:PS51461
SMART:SM00038 SMART:SM00214 GO:GO:0043588 GO:GO:0005615
GO:GO:0007507 GO:GO:0034097 GO:GO:0030199 GO:GO:0007179
GO:GO:0007229 GO:GO:0007160 InterPro:IPR008160 Pfam:PF01391
GO:GO:0042060 GO:GO:0001568 GO:GO:0048565 GO:GO:0050777
GO:GO:0009314 GO:GO:0018149 GO:GO:0032964 GO:GO:0071230
GO:GO:0043206 GO:GO:0005201 GeneTree:ENSGT00660000095287
IPI:IPI00731432 OMA:EGSPGHP GO:GO:0005586 EMBL:DAAA02003919
EMBL:DAAA02003920 Ensembl:ENSBTAT00000028617 ArrayExpress:F1MXS8
Uniprot:F1MXS8
Length = 1466
Score = 142 (55.0 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 82/262 (31%), Positives = 97/262 (37%)
Query: 253 SGRPVGQNAYEDGYGVPQ---GHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYD 309
SG P G+ G P G GPP G G P SA G P
Sbjct: 677 SGAP-GERGPPGAGGPPGPRGGAGPPGPEGGKGAAGP-PGPPGSAGTPGLQGMPGERGG- 733
Query: 310 IPRGPGYEASKG-PGYDA-SKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQ 367
P GPG + KG PG AP D +GP+ P PG P PG + G+
Sbjct: 734 -PGGPGPKGDKGEPGSSGVDGAPGKDGPRGPT-GPIGPPG--PAGQPGDKGESGA----- 784
Query: 368 RGPNYDIHRGPSYDP-QRG-LGYDMQRG-PNYDMQRG-PGYETQR-VPGYDVQRGPVYEA 422
P GP P +RG G G P Q G PG + +R PG + GP A
Sbjct: 785 --PGVPGIAGPRGGPGERGEQGPPGPAGFPGAPGQNGEPGAKGERGAPGEKGEGGPPGAA 842
Query: 423 QRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPY 482
A P PG +G+ R +P G G G P G P G PP N P
Sbjct: 843 GPAGGSGPAGPPGPQGVKGE----RGSPG-----GPGAAGFPGGRGPPG--PPGSNGNPG 891
Query: 483 --GSATPPARSGSGQPRGGNPA 502
GS+ P + G P G N A
Sbjct: 892 PPGSSGAPGKDGPPGPPGSNGA 913
Score = 129 (50.5 bits), Expect = 0.00019, P = 0.00019
Identities = 78/257 (30%), Positives = 104/257 (40%)
Query: 267 GVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMR--AAYDIPRGP----GYEASK 320
G P GPP + G + AY +SG A Y P GP G +
Sbjct: 130 GSPGSPGPPGICESCPTGGQNYSPQYEAYDV-KSGVAGGGIAGYPGPAGPPGPPGPPGTS 188
Query: 321 G-PGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGP----GYDAQKGS-NYDAQRG-PNYD 373
G PG KA P + SY P PG GP G D + G +RG P
Sbjct: 189 GHPGAPHLKAWQKPPQQSTSYSPIGPPGPPGAIGPSGPAGKDGESGRPGRPGERGFPGPP 248
Query: 374 IHRGPSYDP----QRG-LGYDMQRGPNYDMQRGPGYETQR-VPGYDVQRGPVYEAQRAPS 427
+GP+ P +G G+D + G + PG + + VPG + GP+ + AP
Sbjct: 249 GMKGPAGMPGFPGMKGHRGFDGRNGEKGETG-APGLKGENGVPGENGAPGPM-GPRGAPG 306
Query: 428 YIPQRG-PGYDLQRG----QGYDMRRAPSYDPSRGT-GFDGAPRGAAPHGQVPPPLNNVP 481
+ G PG RG +G D + P P GT GF G+P GA G+V P P
Sbjct: 307 ERGRPGLPGAAGARGNDGARGSDGQPGPPGPP--GTAGFPGSP-GAK--GEVGPA--GSP 359
Query: 482 YGSATPPARSGSGQPRG 498
GS+ P + G P+G
Sbjct: 360 -GSSGAPGQRGEPGPQG 375
>UNIPROTKB|F1LRJ1 [details] [associations]
symbol:Col4a3 "Protein Col4a3" species:10116 "Rattus
norvegicus" [GO:0005201 "extracellular matrix structural
constituent" evidence=IEA] [GO:0005581 "collagen" evidence=IEA]
InterPro:IPR001442 Pfam:PF01413 PROSITE:PS51403 SMART:SM00111
RGD:71085 GO:GO:0006917 GO:GO:0008283 InterPro:IPR016187
SUPFAM:SSF56436 GO:GO:0006919 GO:GO:0007166 InterPro:IPR008160
Pfam:PF01391 GO:GO:0016525 GO:GO:0005201 GO:GO:0005587
Gene3D:2.170.240.10 GeneTree:ENSGT00690000101772 KO:K06237 CTD:1285
GO:GO:0032836 IPI:IPI00367109 RefSeq:NP_001129231.1
UniGene:Rn.121139 Ensembl:ENSRNOT00000020669 GeneID:363265
KEGG:rno:363265 NextBio:683046 ArrayExpress:F1LRJ1 Uniprot:F1LRJ1
Length = 1670
Score = 142 (55.0 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 94/293 (32%), Positives = 108/293 (36%)
Query: 234 RRAADGSYGGATGNSENETSGRPV--GQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTS 291
R+ DGS GG G P G+ + G P GPP A AG G GP
Sbjct: 564 RKGFDGSPGGPGAKGPRGPRGEPALSGRKGDQGPPGAPGSPGPPGPAGPAGPPGYGPQGE 623
Query: 292 TSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAK-GP-GYD 349
A G P A GP EA G ++ P P GP P + GP G
Sbjct: 624 PGPKGA--QGVP--GAL----GPPGEAGL-KGESSASIPVLGPP-GPPGPPGQAGPRGLP 673
Query: 350 PTKGPGYDAQKGS-NYDAQRG-PNYDIH--RGPSYDPQRGLGYDMQRG-PNYDMQRGPGY 404
GP G D + G P RGP D G+ G P Y PG
Sbjct: 674 GLPGPVGTCDPGHPGPDGEPGIPEVGFPGARGPKGDQ----GFPGTIGLPGY-----PG- 723
Query: 405 ETQRVPGYDVQRGPVYEAQRAPSY-IP-QRG-PGYDLQRGQGYDMRRA--PSYDPSRGT- 458
ET R PGY + G V A+ PS P + G PG+ +RG + P GT
Sbjct: 724 ETGR-PGYPGEMG-VPGAKGEPSVGRPGEPGKPGFPGERGNSGENGDIGLPGLPGPPGTP 781
Query: 459 ---GFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQP--RG--GNPARR 504
GFDG P P GQ PP P G P R G P G G P RR
Sbjct: 782 GKDGFDGPP--GDP-GQSGPPGAKGPPGRCIPGPRGTQGLPGLNGLKGQPGRR 831
>UNIPROTKB|J9P8F7 [details] [associations]
symbol:COL5A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005581 "collagen" evidence=IEA] [GO:0005201
"extracellular matrix structural constituent" evidence=IEA]
InterPro:IPR000885 Pfam:PF01410 ProDom:PD002078 PROSITE:PS51461
SMART:SM00038 GO:GO:0005581 InterPro:IPR008160 Pfam:PF01391
GO:GO:0005201 GeneTree:ENSGT00700000104155 EMBL:AAEX03006798
EMBL:AAEX03006799 EMBL:AAEX03006800 Ensembl:ENSCAFT00000044143
Uniprot:J9P8F7
Length = 1405
Score = 141 (54.7 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 77/254 (30%), Positives = 100/254 (39%)
Query: 256 PVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRG-P 314
PVG + G P GP S G GA Q G P A +G P
Sbjct: 634 PVGALGLKGSEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQ-GPPGPAG---EKGAP 689
Query: 315 GYEASKGP-GYDASKAPSYDPTKGPSYDPAKGPGYDPTKGP-GYDAQKGSNYD-AQRGPN 371
G + +GP G D + P P GP+ P PG D KG G QKGS D ++GP
Sbjct: 690 GEKGPQGPAGRDGLQGPVGLP--GPA-GPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPP 746
Query: 372 YDIHRGPSYDPQRGLGYDMQRGPN-YDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIP 430
GP+ PQ +G Q GP+ D + GP + Q + G GP P +
Sbjct: 747 -----GPT-GPQGPIG---QPGPSGADGEPGPRGQ-QGLFGQKGDEGP-RGFPGPPGPVG 795
Query: 431 QRG-PGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNV-PYGSATPP 488
+G PG ++G+ D+ + P G GAP P G P + N G P
Sbjct: 796 LQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQGP-PGGIGNPGAVGEKGEP 854
Query: 489 ARSGS-GQPRGGNP 501
+G G P G P
Sbjct: 855 GEAGEPGLPGEGGP 868
>UNIPROTKB|E1C0T1 [details] [associations]
symbol:TFG "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0004871 "signal transducer activity" evidence=IEA]
[GO:0042802 "identical protein binding" evidence=IEA] [GO:0043123
"positive regulation of I-kappaB kinase/NF-kappaB cascade"
evidence=IEA] InterPro:IPR000270 Pfam:PF00564 SMART:SM00666
GO:GO:0043123 GO:GO:0004871 CTD:10342 KO:K09292 OMA:YTTQTSQ
GeneTree:ENSGT00510000047809 EMBL:AADN02032793 IPI:IPI00599103
RefSeq:XP_416608.1 UniGene:Gga.1550 PRIDE:E1C0T1
Ensembl:ENSGALT00000024692 GeneID:418391 KEGG:gga:418391
NextBio:20821576 Uniprot:E1C0T1
Length = 395
Score = 134 (52.2 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 57/210 (27%), Positives = 81/210 (38%)
Query: 286 AGPNTSTSAYAATQSGTP--MRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPA 343
AGP SA A +SGTP + ++ PG + + P Y ++ + +G Y
Sbjct: 194 AGP---PSAPAEERSGTPDSIASSSSAAHPPGVQPQQAP-YPGAQPQTGQQVEGQMYQQY 249
Query: 344 KGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPG 403
+ PGY P + P AQ Y Q Y + S Q+ Y Q P G G
Sbjct: 250 QQPGY-PAQQP--QAQPQQQYGVQYPAGYSPQQAASQPTQQFPAYSQQPAPAAAFP-GQG 305
Query: 404 YETQRVPGYDVQRGPV--YEAQ----RAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRG 457
+ Q++P Q+ P + Q +A P GP Q G R P + P G
Sbjct: 306 -QAQQLPAQQPQQYPAGSFPPQPYTTQASQPAPYSGPP-GAQAAPGTFQPR-PGFTPPPG 362
Query: 458 TGFDGAPRGAAPHGQVPPPLNNVPYGSATP 487
+ P G P+ + PP P G A P
Sbjct: 363 STMTPPPSGPNPYARTRPPFG--PQGYAQP 390
Score = 133 (51.9 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 54/197 (27%), Positives = 70/197 (35%)
Query: 311 PRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGP 370
P P E S P AS + + P P P + P Y PG Q G + Q
Sbjct: 197 PSAPAEERSGTPDSIASSSSAAHP---PGVQPQQAP-Y-----PGAQPQTGQQVEGQM-- 245
Query: 371 NYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSY-I 429
Y ++ P Y Q+ Q+ Y +Q GY Q+ Q+ P Y Q AP+
Sbjct: 246 -YQQYQQPGYPAQQPQAQPQQQ---YGVQYPAGYSPQQAASQPTQQFPAYSQQPAPAAAF 301
Query: 430 PQRGPGYDL--QRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATP 487
P +G L Q+ Q Y P P AP P Q P G P
Sbjct: 302 PGQGQAQQLPAQQPQQYPAGSFPP-QPYTTQASQPAPYSGPPGAQAAPGTFQPRPGFTPP 360
Query: 488 PARSGSGQPRGGNPARR 504
P + + P G NP R
Sbjct: 361 PGSTMTPPPSGPNPYAR 377
>UNIPROTKB|F1LLX1 [details] [associations]
symbol:Col11a1 "Collagen alpha-1(XI) chain" species:10116
"Rattus norvegicus" [GO:0005201 "extracellular matrix structural
constituent" evidence=IEA] [GO:0005581 "collagen" evidence=IEA]
InterPro:IPR000885 Pfam:PF01410 ProDom:PD002078 PROSITE:PS51461
SMART:SM00038 Gene3D:2.60.120.200 InterPro:IPR008985
InterPro:IPR013320 SUPFAM:SSF49899 GO:GO:0005581 InterPro:IPR008160
Pfam:PF01391 InterPro:IPR001791 SMART:SM00282 Pfam:PF02210
GO:GO:0005201 SMART:SM00210 GeneTree:ENSGT00700000104155
OMA:HPGKEGQ IPI:IPI00949317 Ensembl:ENSRNOT00000024138
ArrayExpress:F1LLX1 Uniprot:F1LLX1
Length = 1803
Score = 142 (55.0 bits), Expect = 9.3e-06, P = 9.3e-06
Identities = 87/280 (31%), Positives = 107/280 (38%)
Query: 243 GATGNSENE-TSGR--PVGQNAYEDGYGVPQGHGPPPSATTAGVVGA-GPNTST----SA 294
GA G+ + SG+ P G + G+P G P G G GP S SA
Sbjct: 1003 GAKGDPGPQGISGKDGPAGIRGFPGERGLPGAQGAPGLKGGEGPQGPQGPIGSPGERGSA 1062
Query: 295 YAATQSGTPMRAAYDIPRGP----GYEASKGP----GYDASKAPSYDPTKGPSYDPAKGP 346
A G P R P GP G KGP G D + P P GP+ PA P
Sbjct: 1063 GTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLP--GPA-GPAGSP 1119
Query: 347 GYDPTKGP-GYDAQKGSNYD-AQRGPNYDIH-RGPSYDPQRGL-GYDMQRGPN--YDMQR 400
G D KG G QKGS D + GP +GP P G+ G D + GP M
Sbjct: 1120 GEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAP--GIAGGDGEAGPRGQQGMFG 1177
Query: 401 GPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDL-QRGQ-GYDMRRAPSYDPSRGT 458
G E R G+ GP+ Q P ++G D+ G G R P P+
Sbjct: 1178 QKGDEGAR--GFPGPPGPI-GLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQ-GPNGAD 1233
Query: 459 GFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRG 498
G G P G V G+ PP +GSG P+G
Sbjct: 1234 GPQGPPGSIGSVGGVGEKGEPGEAGNPGPPGEAGSGGPKG 1273
>RGD|2372 [details] [associations]
symbol:Col11a1 "collagen, type XI, alpha 1" species:10116 "Rattus
norvegicus" [GO:0001502 "cartilage condensation" evidence=ISO]
[GO:0001503 "ossification" evidence=IEP] [GO:0002063 "chondrocyte
development" evidence=ISO] [GO:0003007 "heart morphogenesis"
evidence=ISO] [GO:0005201 "extracellular matrix structural
constituent" evidence=TAS] [GO:0005581 "collagen" evidence=ISO]
[GO:0005592 "collagen type XI" evidence=ISO] [GO:0006029
"proteoglycan metabolic process" evidence=ISO] [GO:0007601 "visual
perception" evidence=ISO] [GO:0007605 "sensory perception of sound"
evidence=ISO] [GO:0030199 "collagen fibril organization"
evidence=ISO;TAS] [GO:0031012 "extracellular matrix"
evidence=ISO;IDA] [GO:0035989 "tendon development" evidence=ISO]
[GO:0042472 "inner ear morphogenesis" evidence=ISO] [GO:0048704
"embryonic skeletal system morphogenesis" evidence=ISO] [GO:0048705
"skeletal system morphogenesis" evidence=ISO] [GO:0050910 "detection
of mechanical stimulus involved in sensory perception of sound"
evidence=ISO] [GO:0051216 "cartilage development" evidence=ISO]
[GO:0055010 "ventricular cardiac muscle tissue morphogenesis"
evidence=ISO] InterPro:IPR000885 Pfam:PF01410 ProDom:PD002078
PROSITE:PS51461 SMART:SM00038 RGD:2372 GO:GO:0046872 GO:GO:0007601
GO:GO:0030199 Gene3D:2.60.120.200 InterPro:IPR008985
InterPro:IPR013320 SUPFAM:SSF49899 GO:GO:0042472 GO:GO:0050910
GO:GO:0005581 InterPro:IPR008160 Pfam:PF01391 eggNOG:NOG12793
InterPro:IPR001791 SMART:SM00282 PROSITE:PS50025 GO:GO:0001502
GO:GO:0048704 GO:GO:0006029 GO:GO:0055010 Pfam:PF02210 GO:GO:0005201
GO:GO:0002063 HOGENOM:HOG000085654 KO:K06236 HOVERGEN:HBG103137
OrthoDB:EOG49GKHM SMART:SM00210 GeneTree:ENSGT00700000104155 CTD:1301
EMBL:AABR03012126 EMBL:AABR03013126 EMBL:AABR03014171
EMBL:AABR03015382 EMBL:AABR03015832 EMBL:AABR03016562
EMBL:AABR03017847 EMBL:AABR03017951 EMBL:AABR03018245
EMBL:AABR03019675 EMBL:AABR03023874 EMBL:U20116 EMBL:U20118
EMBL:U20121 IPI:IPI00189470 IPI:IPI00189494 IPI:IPI00325589
IPI:IPI00949317 IPI:IPI00959233 PIR:B31795 RefSeq:NP_037249.1
UniGene:Rn.260 IntAct:P20909 STRING:P20909 PhosphoSite:P20909
PRIDE:P20909 Ensembl:ENSRNOT00000023693 Ensembl:ENSRNOT00000068413
GeneID:25654 KEGG:rno:25654 UCSC:RGD:2372 InParanoid:P20909
NextBio:607535 ArrayExpress:P20909 Genevestigator:P20909
GermOnline:ENSRNOG00000023148 Uniprot:P20909
Length = 1804
Score = 142 (55.0 bits), Expect = 9.3e-06, P = 9.3e-06
Identities = 87/280 (31%), Positives = 107/280 (38%)
Query: 243 GATGNSENE-TSGR--PVGQNAYEDGYGVPQGHGPPPSATTAGVVGA-GPNTST----SA 294
GA G+ + SG+ P G + G+P G P G G GP S SA
Sbjct: 1004 GAKGDPGPQGISGKDGPAGIRGFPGERGLPGAQGAPGLKGGEGPQGPQGPIGSPGERGSA 1063
Query: 295 YAATQSGTPMRAAYDIPRGP----GYEASKGP----GYDASKAPSYDPTKGPSYDPAKGP 346
A G P R P GP G KGP G D + P P GP+ PA P
Sbjct: 1064 GTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLP--GPA-GPAGSP 1120
Query: 347 GYDPTKGP-GYDAQKGSNYD-AQRGPNYDIH-RGPSYDPQRGL-GYDMQRGPN--YDMQR 400
G D KG G QKGS D + GP +GP P G+ G D + GP M
Sbjct: 1121 GEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAP--GIAGGDGEAGPRGQQGMFG 1178
Query: 401 GPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDL-QRGQ-GYDMRRAPSYDPSRGT 458
G E R G+ GP+ Q P ++G D+ G G R P P+
Sbjct: 1179 QKGDEGAR--GFPGPPGPI-GLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQ-GPNGAD 1234
Query: 459 GFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRG 498
G G P G V G+ PP +GSG P+G
Sbjct: 1235 GPQGPPGSIGSVGGVGEKGEPGEAGNPGPPGEAGSGGPKG 1274
>UNIPROTKB|P20909 [details] [associations]
symbol:Col11a1 "Collagen alpha-1(XI) chain" species:10116
"Rattus norvegicus" [GO:0005201 "extracellular matrix structural
constituent" evidence=IEA] [GO:0005581 "collagen" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000885
Pfam:PF01410 ProDom:PD002078 PROSITE:PS51461 SMART:SM00038 RGD:2372
GO:GO:0046872 GO:GO:0007601 GO:GO:0030199 Gene3D:2.60.120.200
InterPro:IPR008985 InterPro:IPR013320 SUPFAM:SSF49899 GO:GO:0042472
GO:GO:0050910 GO:GO:0005581 InterPro:IPR008160 Pfam:PF01391
eggNOG:NOG12793 InterPro:IPR001791 SMART:SM00282 PROSITE:PS50025
GO:GO:0001502 GO:GO:0048704 GO:GO:0006029 GO:GO:0055010
Pfam:PF02210 GO:GO:0005201 GO:GO:0002063 HOGENOM:HOG000085654
KO:K06236 HOVERGEN:HBG103137 OrthoDB:EOG49GKHM SMART:SM00210
GeneTree:ENSGT00700000104155 CTD:1301 EMBL:AABR03012126
EMBL:AABR03013126 EMBL:AABR03014171 EMBL:AABR03015382
EMBL:AABR03015832 EMBL:AABR03016562 EMBL:AABR03017847
EMBL:AABR03017951 EMBL:AABR03018245 EMBL:AABR03019675
EMBL:AABR03023874 EMBL:U20116 EMBL:U20118 EMBL:U20121
IPI:IPI00189470 IPI:IPI00189494 IPI:IPI00325589 IPI:IPI00949317
IPI:IPI00959233 PIR:B31795 RefSeq:NP_037249.1 UniGene:Rn.260
IntAct:P20909 STRING:P20909 PhosphoSite:P20909 PRIDE:P20909
Ensembl:ENSRNOT00000023693 Ensembl:ENSRNOT00000068413 GeneID:25654
KEGG:rno:25654 UCSC:RGD:2372 InParanoid:P20909 NextBio:607535
ArrayExpress:P20909 Genevestigator:P20909
GermOnline:ENSRNOG00000023148 Uniprot:P20909
Length = 1804
Score = 142 (55.0 bits), Expect = 9.3e-06, P = 9.3e-06
Identities = 87/280 (31%), Positives = 107/280 (38%)
Query: 243 GATGNSENE-TSGR--PVGQNAYEDGYGVPQGHGPPPSATTAGVVGA-GPNTST----SA 294
GA G+ + SG+ P G + G+P G P G G GP S SA
Sbjct: 1004 GAKGDPGPQGISGKDGPAGIRGFPGERGLPGAQGAPGLKGGEGPQGPQGPIGSPGERGSA 1063
Query: 295 YAATQSGTPMRAAYDIPRGP----GYEASKGP----GYDASKAPSYDPTKGPSYDPAKGP 346
A G P R P GP G KGP G D + P P GP+ PA P
Sbjct: 1064 GTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLP--GPA-GPAGSP 1120
Query: 347 GYDPTKGP-GYDAQKGSNYD-AQRGPNYDIH-RGPSYDPQRGL-GYDMQRGPN--YDMQR 400
G D KG G QKGS D + GP +GP P G+ G D + GP M
Sbjct: 1121 GEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAP--GIAGGDGEAGPRGQQGMFG 1178
Query: 401 GPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDL-QRGQ-GYDMRRAPSYDPSRGT 458
G E R G+ GP+ Q P ++G D+ G G R P P+
Sbjct: 1179 QKGDEGAR--GFPGPPGPI-GLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQ-GPNGAD 1234
Query: 459 GFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRG 498
G G P G V G+ PP +GSG P+G
Sbjct: 1235 GPQGPPGSIGSVGGVGEKGEPGEAGNPGPPGEAGSGGPKG 1274
>TAIR|locus:2077547 [details] [associations]
symbol:AT3G07030 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005829
"cytosol" evidence=IDA] InterPro:IPR002775 Pfam:PF01918
GO:GO:0005829 EMBL:CP002686 GO:GO:0003676 IPI:IPI00519674
RefSeq:NP_187359.2 UniGene:At.74527 ProteinModelPortal:F4JD88
SMR:F4JD88 PRIDE:F4JD88 EnsemblPlants:AT3G07030.1 GeneID:3768790
KEGG:ath:AT3G07030 OMA:ERRNDGY Uniprot:F4JD88
Length = 405
Score = 134 (52.2 bits), Expect = 9.4e-06, P = 9.4e-06
Identities = 57/209 (27%), Positives = 72/209 (34%)
Query: 260 NAY-EDGYGVPQGHGPPP--SATTAGVVGAGPNTSTSAYAATQS-GTPMRA-AYDI-PRG 313
NAY E+G V +G TT GV+ + T G RA A D+
Sbjct: 150 NAYGEEGEVVAEGEAGEEVDMETTKGVMKEKTKGTIKKIIKTMKVGIQTRAEAVDVVDEA 209
Query: 314 PGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYD 373
+G GY + Y + Y + GY + Y + Y R Y
Sbjct: 210 MAIVGGRG-GYGGGRDGGYGGGRDDGYGERRNDGYGERRNDRYGGGRDDGYGGGRDDGYG 268
Query: 374 IHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRG 433
R Y +RG G+ RG D G G G +G Y R Y RG
Sbjct: 269 GGRNDGYGGRRG-GFRGGRGGGRDEGYGGG--RGGYGGRSGGQGDGYGGGRGDGYGGGRG 325
Query: 434 PGYDLQRGQGYDMRRAPSYDPSRGTGFDG 462
GY RG GY R YD R G+ G
Sbjct: 326 DGYGGGRGDGYGGGRVDRYDGGRRDGYGG 354
Score = 125 (49.1 bits), Expect = 9.3e-05, P = 9.3e-05
Identities = 50/158 (31%), Positives = 59/158 (37%)
Query: 312 RGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPN 371
R GY + GY + Y +G + +G G D GY +G Y + G
Sbjct: 255 RDDGYGGGRDDGYGGGRNDGYGGRRG-GFRGGRGGGRDE----GYGGGRGG-YGGRSGG- 307
Query: 372 YDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQ 431
+G Y RG GY RG Y RG GY RV YD R Y R Y
Sbjct: 308 ----QGDGYGGGRGDGYGGGRGDGYGGGRGDGYGGGRVDRYDGGRRDGYGGGRYDGYGGG 363
Query: 432 RGPGYDLQRGQGYDMRRAPSYDPSRGT-GFDGAPRGAA 468
+ GY RG GY R Y RG G G R A
Sbjct: 364 KSDGYGGGRG-GYRGGRG-GYGRGRGRMGNGGRSRDGA 399
>TAIR|locus:2043530 [details] [associations]
symbol:AT2G25970 "AT2G25970" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006606 "protein import into nucleus"
evidence=RCA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005829 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003723 EMBL:AC004747 EMBL:AC005395
eggNOG:NOG300923 KO:K13210 HSSP:Q9UNW9 EMBL:AY078954 EMBL:AK226845
IPI:IPI00540360 PIR:T02627 RefSeq:NP_180167.1 UniGene:At.21555
ProteinModelPortal:O82762 SMR:O82762 STRING:O82762 PaxDb:O82762
PRIDE:O82762 ProMEX:O82762 EnsemblPlants:AT2G25970.1 GeneID:817137
KEGG:ath:AT2G25970 TAIR:At2g25970 HOGENOM:HOG000242545
InParanoid:O82762 OMA:AANSTQD PhylomeDB:O82762
ProtClustDB:CLSN2913011 ArrayExpress:O82762 Genevestigator:O82762
Uniprot:O82762
Length = 632
Score = 139 (54.0 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 75/275 (27%), Positives = 98/275 (35%)
Query: 239 GSYGGATGNSENETSGRPVGQNAYE---DGYGVPQGHGPPPSATTAGVVGAGPNTSTSAY 295
GSY T + S P Q + + D YG Q P ++A P T T+ Y
Sbjct: 363 GSYPQQTSAGYYDQSSVPPSQQSAQGEYDYYGQQQSQQPSSGGSSA------PPTDTTGY 416
Query: 296 AATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPG 355
Q + A G GY+ Y+AS+ Y G YD +G GY T P
Sbjct: 417 NYYQHASGYGQA-----GQGYQQDGYGAYNASQQSGYGQAAG--YDQ-QG-GYGSTTNPS 467
Query: 356 YD---AQKGSNYDAQRGP-NYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPG 411
+ +Q AQ G Y G Q G Q G GY +Q
Sbjct: 468 QEEDASQAAPPSSAQSGQAGYGT-TGQQPPAQGSTG---QAGYGAPPTSQAGYSSQPAAA 523
Query: 412 YDVQRGPVYEAQRAPSY-IPQRGPGYDLQRGQ--GYDMRRAPSYDPSRGTGFDGAPRGAA 468
Y+ G A + P+Y Q+ PG G GY A Y G+ AP+G
Sbjct: 524 YNSGYGAPPPASKPPTYGQSQQSPGAPGSYGSQSGYAQPAASGYGQPPAYGYGQAPQGYG 583
Query: 469 PHGQVPPPLNNVPYGS-ATPPARSGSGQPRGGNPA 502
+G P Y S + A +G G GG PA
Sbjct: 584 SYGGYTQPAAGGGYSSDGSAGATAGGG---GGTPA 615
Score = 123 (48.4 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 69/265 (26%), Positives = 89/265 (33%)
Query: 247 NSENETSGRPVGQN-AYEDGYGV-PQGHGPPPSATTAGVVGAGPNTSTSAYAAT-QSGTP 303
+ EN +G + GY P PP A G G AY Q G
Sbjct: 302 SGENRMRNSAMGGGYPQQGGYQARPPSSWAPPGGPPAQP-GYGGYMQPGAYPGPPQYGQS 360
Query: 304 MRAAYDIPRGPGY-EASKGPGYDASKAPSYDPT-KGPSYDPAKG-PGYDPTKGPGYDA-Q 359
+Y GY + S P S YD + S P+ G PT GY+ Q
Sbjct: 361 PYGSYPQQTSAGYYDQSSVPPSQQSAQGEYDYYGQQQSQQPSSGGSSAPPTDTTGYNYYQ 420
Query: 360 KGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPV 419
S Y Q G Y +Y+ + GY G YD Q G G T P +
Sbjct: 421 HASGY-GQAGQGYQQDGYGAYNASQQSGYGQAAG--YDQQGGYGSTTN--PSQEEDA--- 472
Query: 420 YEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNN 479
+Q AP Q G Q G G ++ P+ + G+ P A + P N
Sbjct: 473 --SQAAPPSSAQSG-----QAGYGTTGQQPPAQGSTGQAGYGAPPTSQAGYSSQPAAAYN 525
Query: 480 VPYGSATP---PARSGSGQPRGGNP 501
YG+ P P G Q G P
Sbjct: 526 SGYGAPPPASKPPTYGQSQQSPGAP 550
Score = 42 (19.8 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 78 TLRQELAAAQHELQI--LHGQIGGMKSERELQMRNLTEKI 115
T++ A +Q+ LH G ER LQ+ +TE+I
Sbjct: 251 TIKSMQAKTGARIQVIPLHLPPGDPTPERTLQIDGITEQI 290
>UNIPROTKB|F1N7Q7 [details] [associations]
symbol:COL4A2 "Collagen alpha-2(IV) chain" species:9913
"Bos taurus" [GO:0071560 "cellular response to transforming growth
factor beta stimulus" evidence=IEA] [GO:0016525 "negative
regulation of angiogenesis" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005587 "collagen
type IV" evidence=IEA] [GO:0005201 "extracellular matrix structural
constituent" evidence=IEA] InterPro:IPR001442 Pfam:PF01413
PROSITE:PS51403 SMART:SM00111 GO:GO:0071560 InterPro:IPR016187
SUPFAM:SSF56436 GO:GO:0006351 InterPro:IPR008160 Pfam:PF01391
GO:GO:0016525 GO:GO:0005201 GO:GO:0005587 Gene3D:2.170.240.10
GeneTree:ENSGT00690000101772 EMBL:DAAA02034911 IPI:IPI00712524
Ensembl:ENSBTAT00000005916 OMA:QETIQPG Uniprot:F1N7Q7
Length = 1650
Score = 141 (54.7 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 75/251 (29%), Positives = 97/251 (38%)
Query: 226 LMNAPNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGH-GPPPSATTAGVV 284
L P + R D GA G + + P G + + G+P GH G G
Sbjct: 18 LQGFPGLQGRKGDKGQRGAPGITGPKGDVGPRGVSGFPGADGIP-GHPGQGGPRGPPGYD 76
Query: 285 GAGPNTSTSAYAATQSGTPMRAAYDIPRGP-GYEASKGPGYDASKAPSYDPTKGPSYDPA 343
G S YA G P + PRGP G + KG Y A + D +G +P
Sbjct: 77 GCNGTVGDSGYA----GPPGPGGFLGPRGPQGPKGQKGEPY-ALSSEDRDKYRGEPGEPG 131
Query: 344 KGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDP-QRGLGYDMQRGPNYDMQ-RG 401
P PG Q G A P GP P RGLG+ ++G DM +G
Sbjct: 132 LVGLQGPPGRPGPVGQMGP-VGAPGRPGPPGPPGPKGQPGNRGLGFYGEKGEKGDMGLQG 190
Query: 402 PGYETQRVP---GYDVQRGPVYEAQRAPSYIPQRGPGYDLQRG-QGYDMRRAPSYDPSRG 457
PG +P GY + PVYE +P++ G ++G QG R S G
Sbjct: 191 PG----GIPPDNGYVEKPTPVYEL------LPEQYKG---EKGSQGEPGRIGVSLKGEEG 237
Query: 458 T-GFDGAPRGA 467
GF G PRGA
Sbjct: 238 VVGFSG-PRGA 247
>UNIPROTKB|F1PHX8 [details] [associations]
symbol:COL5A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005581 "collagen" evidence=IEA] [GO:0005201
"extracellular matrix structural constituent" evidence=IEA]
InterPro:IPR000885 Pfam:PF01410 ProDom:PD002078 PROSITE:PS51461
SMART:SM00038 Gene3D:2.60.120.200 InterPro:IPR008985
InterPro:IPR013320 SUPFAM:SSF49899 GO:GO:0005581 InterPro:IPR008160
Pfam:PF01391 InterPro:IPR001791 Pfam:PF02210 GO:GO:0005201
OMA:TIYEGIG SMART:SM00210 GeneTree:ENSGT00700000104155
EMBL:AAEX03006798 EMBL:AAEX03006799 EMBL:AAEX03006800
Ensembl:ENSCAFT00000031582 Uniprot:F1PHX8
Length = 1814
Score = 141 (54.7 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 77/254 (30%), Positives = 100/254 (39%)
Query: 256 PVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRG-P 314
PVG + G P GP S G GA Q G P A +G P
Sbjct: 1043 PVGALGLKGSEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQ-GPPGPAG---EKGAP 1098
Query: 315 GYEASKGP-GYDASKAPSYDPTKGPSYDPAKGPGYDPTKGP-GYDAQKGSNYD-AQRGPN 371
G + +GP G D + P P GP+ P PG D KG G QKGS D ++GP
Sbjct: 1099 GEKGPQGPAGRDGLQGPVGLP--GPA-GPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPP 1155
Query: 372 YDIHRGPSYDPQRGLGYDMQRGPN-YDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIP 430
GP+ PQ +G Q GP+ D + GP + Q + G GP P +
Sbjct: 1156 -----GPT-GPQGPIG---QPGPSGADGEPGPRGQ-QGLFGQKGDEGP-RGFPGPPGPVG 1204
Query: 431 QRG-PGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNV-PYGSATPP 488
+G PG ++G+ D+ + P G GAP P G P + N G P
Sbjct: 1205 LQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQGP-PGGIGNPGAVGEKGEP 1263
Query: 489 ARSGS-GQPRGGNP 501
+G G P G P
Sbjct: 1264 GEAGEPGLPGEGGP 1277
>MGI|MGI:2157767 [details] [associations]
symbol:Krtap21-1 "keratin associated protein 21-1"
species:10090 "Mus musculus" [GO:0001942 "hair follicle
development" evidence=IMP] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005882 "intermediate filament" evidence=IEA] [GO:0007165
"signal transduction" evidence=IMP] [GO:0008283 "cell
proliferation" evidence=IMP] [GO:0022405 "hair cycle process"
evidence=IMP] [GO:0031077 "post-embryonic camera-type eye
development" evidence=IMP] [GO:0042640 "anagen" evidence=IMP]
[GO:0043480 "pigment accumulation in tissues" evidence=IMP]
[GO:0043588 "skin development" evidence=IMP] [GO:0048589
"developmental growth" evidence=IMP] [GO:0051726 "regulation of
cell cycle" evidence=IMP] MGI:MGI:2157767 GO:GO:0007165
GO:GO:0043588 GO:GO:0008283 GO:GO:0005882 GO:GO:0051726
GO:GO:0042640 GO:GO:0031077 EMBL:AF345297 EMBL:AK003736
IPI:IPI00126890 UniGene:Mm.46109 HSSP:P10969 Genevestigator:Q925H4
GO:GO:0043480 Uniprot:Q925H4
Length = 128
Score = 111 (44.1 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 32/103 (31%), Positives = 32/103 (31%)
Query: 301 GTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQK 360
G R Y G GY G GY Y G Y G GY G GY
Sbjct: 14 GYGSRYGYGCGYGSGYGCGYGSGYGCGYGSGYGCGYGSGYGCGYGSGYGCGYGSGYGCGY 73
Query: 361 GSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPG 403
GS Y G Y G Y G GY G Y G G
Sbjct: 74 GSGYGCGYGSGYGCGYGSGYGCGYGSGYGCGYGSRYGCGYGSG 116
Score = 103 (41.3 bits), Expect = 9.3e-05, P = 9.3e-05
Identities = 31/98 (31%), Positives = 33/98 (33%)
Query: 315 GYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDI 374
GY G GY Y G Y G GY G GY GS Y G Y
Sbjct: 20 GYGCGYGSGYGCGYGSGYGCGYGSGYGCGYGSGYGCGYGSGYGCGYGSGYGCGYGSGYGC 79
Query: 375 HRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGY 412
G Y G GY G Y G GY ++ GY
Sbjct: 80 GYGSGY----GCGYGSGYGCGYGSGYGCGYGSRYGCGY 113
>ZFIN|ZDB-GENE-030131-5726 [details] [associations]
symbol:eif3s10 "eukaryotic translation initiation
factor 3, subunit 10 (theta)" species:7955 "Danio rerio"
[GO:0001732 "formation of translation initiation complex"
evidence=ISS] [GO:0005852 "eukaryotic translation initiation factor
3 complex" evidence=ISS] [GO:0003743 "translation initiation factor
activity" evidence=IEA;ISS] [GO:0006413 "translational initiation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 ZFIN:ZDB-GENE-030131-5726 GO:GO:0003743 GO:GO:0005852
HOGENOM:HOG000246822 KO:K03254 HAMAP:MF_03000
GeneTree:ENSGT00690000102108 EMBL:BC059196 EMBL:BC066670
IPI:IPI00489212 RefSeq:NP_956114.2 UniGene:Dr.132282
ProteinModelPortal:Q6PCR7 STRING:Q6PCR7 PRIDE:Q6PCR7
Ensembl:ENSDART00000111462 GeneID:327515 KEGG:dre:327515 CTD:327515
eggNOG:NOG123880 HOVERGEN:HBG006128 InParanoid:Q6PCR7
NextBio:20810067 Bgee:Q6PCR7 GO:GO:0001732 Uniprot:Q6PCR7
Length = 1267
Score = 139 (54.0 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 109/437 (24%), Positives = 177/437 (40%)
Query: 58 QHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS-ERELQMRNLTEKIA 116
+ + + K A E QR+ EL Q E +I + ++ K+ E + +M + E
Sbjct: 705 EEIPLIKKAYEEQRIKD------MELWELQEEERITNMKMEREKALEHKQRMSRMMEDKE 758
Query: 117 KMEAELKTAEPVKLEFQKSKTEAQNLVVAREE-LIAKVHQLTQDLQRA--HTDVQQIPAL 173
+++K A E +K K + LV R++ L + Q +D ++A H ++ +
Sbjct: 759 NFLSKIKAARSFIYE-EKLKQFQERLVEERKKRLEERKKQRKEDRRKAFYHQKEEEAQRI 817
Query: 174 LSE-LESLRQEYHHCRGTY-EYEKKFYNDHLESLQVMEKNYITMATEVE---KLRAELMN 228
E L+ R+E E E++ Y + L L+ E+ E+E + + E
Sbjct: 818 REEQLKKEREERERLEQEQREEEEREYQERLRKLEEQERKQRARQQEIEERERRKEEERR 877
Query: 229 APNV--DRRAADGSYGGATGNSENETSGR-PVGQNAY-EDGYGVPQGHGPPPSATTAGVV 284
AP ++ A+ G E E+ R PV + ++G +G P
Sbjct: 878 APEEKPNKEWAEREESGWRKRGEGESEWRRPVPDRDWRQEGR---EGREEPDREDRDLPF 934
Query: 285 GAGPNTSTSAYAATQSGTPMRAAYDIPRGP--GYEASKGP--GYDASKAP--SYDPTKGP 338
G ++ A+ + G +R D RGP G + + P G+D + +D +G
Sbjct: 935 RRGGESARRG-ASDEKG--LRRGCDDDRGPRRGGDDERPPRRGFDDDRGTRRGFDDDRGQ 991
Query: 339 SY-DPAKGP--GYDPTKGPG--YDAQKGSNY-DAQRGPN--YDIHRGPSYDPQRGLGYDM 390
D +GP G D +GP D +G D RGP +D RGP +RG+ D
Sbjct: 992 RRGDDDRGPRRGMDDDRGPRRPIDDDRGPRRSDDDRGPRRGFDDDRGP----RRGM--DE 1045
Query: 391 QRGPNY--DMQRGP--GYETQRVP--GYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGY 444
RGP D GP G + +R G D GP P + P PG R +
Sbjct: 1046 PRGPRRGADDDWGPRRGGDDERGGRRGMD-DSGPRRGEDSRP-WKPLGRPGAGGWRER-- 1101
Query: 445 DMRRAPSYDPSRGTGFD 461
+ R S+ P R +G D
Sbjct: 1102 EKAREESWGPPRDSGHD 1118
Score = 97 (39.2 bits), Expect = 0.00095, Sum P(2) = 0.00095
Identities = 57/193 (29%), Positives = 78/193 (40%)
Query: 303 PMRAAYDIPRGP--GYEASKGPGY-DASKAP--SYDPTKGPS--YDPAKGPGY-DPTKGP 354
P R +D RG G++ +G D + P D +GP D +GP D +GP
Sbjct: 970 PPRRGFDDDRGTRRGFDDDRGQRRGDDDRGPRRGMDDDRGPRRPIDDDRGPRRSDDDRGP 1029
Query: 355 --GYDAQKGSN--YDAQRGPNYDIHRGPSYD--PQRGLGYDMQRGPNYDMQ-RGPGYETQ 407
G+D +G D RGP RG D P+RG G D +RG M GP
Sbjct: 1030 RRGFDDDRGPRRGMDEPRGPR----RGADDDWGPRRG-GDD-ERGGRRGMDDSGPRRGED 1083
Query: 408 RVPGYDVQR---GPVYEAQRA--PSYIPQRGPGYDLQRGQ--GYDMRRAPSYDPSRGTGF 460
P + R G E ++A S+ P R G+D G+ G D R + R
Sbjct: 1084 SRPWKPLGRPGAGGWREREKAREESWGPPRDSGHDDDGGERDGDDQREGERFRERRSARE 1143
Query: 461 DGAP--RGAAPHG 471
+G+ RG G
Sbjct: 1144 EGSAWRRGGGGGG 1156
Score = 74 (31.1 bits), Expect = 0.00095, Sum P(2) = 0.00095
Identities = 35/164 (21%), Positives = 74/164 (45%)
Query: 68 ENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSER--ELQMRNLTEKIAKMEAEL--- 122
E QR A L+ A +H+ + Q + ER L ++ E++ + EAEL
Sbjct: 547 EEQRQQAITAYLKN--ARKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKV 604
Query: 123 KTAEPVKLEFQKSKTEAQNLVVAREELIAK-VHQLTQDLQRAHTDVQQIPAL-LSELESL 180
+ AE +L + + E + ++ E++ K V + + +++ + + + +LE L
Sbjct: 605 RKAEEERLRQEAKEREKERIMQEHEQIKKKTVRERLEQIKKTELGAKAFKDIDIEDLEEL 664
Query: 181 RQEYHHCRGTYEYEKKFYNDHLESLQVMEK--NYITMATEVEKL 222
++ + + EK+ + E L+ EK +Y A +E++
Sbjct: 665 DPDFIMAKQVEQLEKE-KKELQERLKNQEKKIDYFERAKRLEEI 707
>UNIPROTKB|F1N474 [details] [associations]
symbol:COL4A5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0031594 "neuromuscular junction" evidence=IEA]
[GO:0007528 "neuromuscular junction development" evidence=IEA]
[GO:0005605 "basal lamina" evidence=IEA] [GO:0005587 "collagen type
IV" evidence=IEA] [GO:0005201 "extracellular matrix structural
constituent" evidence=IEA] InterPro:IPR001442 Pfam:PF01413
PROSITE:PS51403 SMART:SM00111 GO:GO:0007528 InterPro:IPR016187
SUPFAM:SSF56436 GO:GO:0031594 GO:GO:0005605 InterPro:IPR008160
Pfam:PF01391 GO:GO:0005201 GO:GO:0005587 Gene3D:2.170.240.10
GeneTree:ENSGT00690000101772 EMBL:DAAA02071513 EMBL:DAAA02071512
IPI:IPI00729819 Ensembl:ENSBTAT00000019400 OMA:MPMNMEP
Uniprot:F1N474
Length = 1688
Score = 140 (54.3 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 62/203 (30%), Positives = 76/203 (37%)
Query: 311 PRGPGYEASKGP--GYDASKAPSYDPTK-G-PSYDPAKG-PGYDPTKG-PGYDAQKGSNY 364
P PG GP G K +P K G P D G PG G PGY + G
Sbjct: 266 PGPPGIRGPPGPPGGVKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGDPGYPGEPGR-- 323
Query: 365 DAQRGPNYDIHR-GPS--YDPQRGLGYDMQRGPNYDMQRGPGYETQR-VPGYDVQRGPVY 420
D ++G D GP P+ G G + N + PG + R PG +Q P
Sbjct: 324 DGEKGQKGDTGLPGPPGLVIPRPGTGVTVGEKGNIGLPGLPGDKGDRGFPG--IQGPPGL 381
Query: 421 EAQRAPSYI-PQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNN 479
P+ I P PG+ +RGQ D P G DG P P G PP +
Sbjct: 382 PGPPGPAVIGPPGPPGFPGERGQKGD-EGPPGISIPGSPGLDGQPGAPGPPGPPGPPGPH 440
Query: 480 VPYGS----ATPPARSGSGQPRG 498
+P A PP GS RG
Sbjct: 441 IPPSDKICEAGPPGPPGSPGDRG 463
>UNIPROTKB|F1RYI8 [details] [associations]
symbol:COL3A1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071230 "cellular response to amino acid stimulus"
evidence=IEA] [GO:0050777 "negative regulation of immune response"
evidence=IEA] [GO:0048565 "digestive tract development"
evidence=IEA] [GO:0048407 "platelet-derived growth factor binding"
evidence=IEA] [GO:0046332 "SMAD binding" evidence=IEA] [GO:0043588
"skin development" evidence=IEA] [GO:0043206 "extracellular fibril
organization" evidence=IEA] [GO:0042060 "wound healing"
evidence=IEA] [GO:0034097 "response to cytokine stimulus"
evidence=IEA] [GO:0032964 "collagen biosynthetic process"
evidence=IEA] [GO:0030199 "collagen fibril organization"
evidence=IEA] [GO:0018149 "peptide cross-linking" evidence=IEA]
[GO:0009314 "response to radiation" evidence=IEA] [GO:0007507
"heart development" evidence=IEA] [GO:0007229 "integrin-mediated
signaling pathway" evidence=IEA] [GO:0007179 "transforming growth
factor beta receptor signaling pathway" evidence=IEA] [GO:0007160
"cell-matrix adhesion" evidence=IEA] [GO:0005615 "extracellular
space" evidence=IEA] [GO:0005586 "collagen type III" evidence=IEA]
[GO:0005201 "extracellular matrix structural constituent"
evidence=IEA] [GO:0001568 "blood vessel development" evidence=IEA]
InterPro:IPR000885 InterPro:IPR001007 Pfam:PF00093 Pfam:PF01410
ProDom:PD002078 PROSITE:PS01208 PROSITE:PS50184 PROSITE:PS51461
SMART:SM00038 SMART:SM00214 GO:GO:0043588 GO:GO:0005615
GO:GO:0007507 GO:GO:0034097 GO:GO:0030199 GO:GO:0007179
GO:GO:0007229 GO:GO:0007160 InterPro:IPR008160 Pfam:PF01391
GO:GO:0042060 GO:GO:0001568 GO:GO:0048565 GO:GO:0050777
GO:GO:0009314 GO:GO:0018149 GO:GO:0032964 GO:GO:0071230
GO:GO:0043206 GO:GO:0005201 GeneTree:ENSGT00660000095287 KO:K06236
CTD:1281 OMA:EGSPGHP GO:GO:0005586 EMBL:CU467671
RefSeq:NP_001230226.1 UniGene:Ssc.24309 UniGene:Ssc.97562
Ensembl:ENSSSCT00000017459 GeneID:100152001 KEGG:ssc:100152001
Uniprot:F1RYI8
Length = 1466
Score = 139 (54.0 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 86/292 (29%), Positives = 107/292 (36%)
Query: 231 NVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGA-GP- 288
+V A G GG G + P G + + G P GPP AG G GP
Sbjct: 160 DVKAGVAGGGIGGYPGPAGPPGPPGPPGVSGHPGAPGSPGYQGPPGEPGQAGPAGPPGPP 219
Query: 289 ---NTSTSAYAATQSGTPMRAAY-DIPRGPGYEASKG-PGYDASKAP-SYDPTKGPSYDP 342
S A +SG P R +P PG + G PG+ K +D G D
Sbjct: 220 GAIGPSGPAGKDGESGRPGRPGERGLPGPPGLKGPAGMPGFPGMKGHRGFDGRNGEKGDT 279
Query: 343 AKGPGYDPTKG-PGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGL-GYDMQRGPNYDMQR 400
PG G PG + G RG + R P G G D RG D Q
Sbjct: 280 G-APGLKGENGLPGENGAPGPM--GPRGAPGERGR-PGLPGAAGARGNDGARGS--DGQP 333
Query: 401 GP-GYE-TQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGT 458
GP G T PG +G V A +P P PG QRG+ A + P
Sbjct: 334 GPPGPPGTAGFPGSPGAKGEVGPAG-SPG--PSGSPG---QRGEPGPQGHAGAAGPPGPP 387
Query: 459 GFDGAPRGAAPHGQVPPPLNNVP--YGSATPPARSGS-GQP--RG--GNPAR 503
G +G+P G G P + P G+ PP G+ G P RG G P +
Sbjct: 388 GSNGSPGGKGEMG--PAGIPGAPGLMGARGPPGPPGTNGAPGQRGAAGEPGK 437
>UNIPROTKB|K7EKB2 [details] [associations]
symbol:TAF15 "TATA-binding protein-associated factor 2N"
species:9606 "Homo sapiens" [GO:0005622 "intracellular"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001876 Pfam:PF00641 PROSITE:PS01358 PROSITE:PS50199
SMART:SM00547 EMBL:AC015849 HGNC:HGNC:11547 Ensembl:ENST00000585577
Uniprot:K7EKB2
Length = 214
Score = 125 (49.1 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 48/140 (34%), Positives = 52/140 (37%)
Query: 315 GYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTK-GPGYDAQK-GSNYDAQRGPNY 372
GY G G D G D + G GY + G GY + G Y RG Y
Sbjct: 69 GYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGGGY 128
Query: 373 DIHRGPSYDPQRGLGY--DMQRGPNYDMQRG--PGYETQRVPGYDVQR-GPVYEAQRAPS 427
RG Y RG GY D RG Y RG GY R GY R G Y R
Sbjct: 129 GGDRGGGYGGDRGGGYGGDRSRG-GYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDRGGG 187
Query: 428 YIPQRGPGYDLQRGQGYDMR 447
Y RG GY + G D R
Sbjct: 188 YGGDRG-GYGGKMGGRNDYR 206
Score = 123 (48.4 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 50/174 (28%), Positives = 64/174 (36%)
Query: 228 NAPNV-DRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGA 286
N P D R + G + G E GR G+ GYG + G ++G G
Sbjct: 45 NEPRPEDSRPSGGDFRGRGYGGERGYRGRG-GRGGDRGGYGGDRSGGGYGGDRSSGG-GY 102
Query: 287 GPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSY--DPTKGPSYDPAK 344
+ S Y +SG Y RG GY +G GY + Y D ++G
Sbjct: 103 SGDRSGGGYGGDRSG----GGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRSRG------- 151
Query: 345 GPGYDPTKGPGYDAQKGSNYDAQR-GPNYDIHRGPSYDPQRGLGYDMQRGPNYD 397
G G D G GY + Y R G Y RG Y RG GY + G D
Sbjct: 152 GYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDRGGGYGGDRG-GYGGKMGGRND 204
>WB|WBGene00000628 [details] [associations]
symbol:col-51 species:6239 "Caenorhabditis elegans"
[GO:0042302 "structural constituent of cuticle" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] InterPro:IPR002486
Pfam:PF01484 SMART:SM01088 GO:GO:0042302 HOGENOM:HOG000085656
GeneTree:ENSGT00530000064217 EMBL:FO080999 RefSeq:NP_491195.1
UniGene:Cel.29694 ProteinModelPortal:Q7Z152 MINT:MINT-3384184
STRING:Q7Z152 EnsemblMetazoa:T28F2.8 GeneID:189052
KEGG:cel:CELE_T28F2.8 UCSC:T28F2.8 CTD:189052 WormBase:T28F2.8
eggNOG:NOG245561 InParanoid:Q7Z152 OMA:MMASRRI NextBio:941036
Uniprot:Q7Z152
Length = 435
Score = 132 (51.5 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 90/299 (30%), Positives = 102/299 (34%)
Query: 220 EKLRAE-LMNAPNVDRRAADGSYGGATGNSENETSGRPVGQ-NAYEDGYGVPQGH-GPPP 276
EK+ E L A AA G G A G G G + G P G GPP
Sbjct: 84 EKVAFEGLFRAKRQYATAAGGGGGYAAGGGGGGGGGGGGGGCHCAAQASGCPAGPPGPPG 143
Query: 277 SATTAGVVG-AGPNTSTSAYAATQSGTPMRAAYDIPRGP----GYEASKGP-GYDASKAP 330
A T G G AG + SG+ +A P GP G + + GP G P
Sbjct: 144 EAGTDGEPGQAGQDGQPGQAGQADSGSSGQACITCPAGPPGPPGPDGNAGPAGAPGVPGP 203
Query: 331 SYD----PTKGPSYDPAKGPGYDPTKG-PGYDAQKGS----NYDAQRGPNYDIHRGPSYD 381
D P GP P PG D G PG D Q G+ ++ GP GP
Sbjct: 204 DGDAGSPPPPGPPGPPGP-PGNDGQPGAPGQDGQPGAPGTNTVNSPGGPGPAGPPGPPGP 262
Query: 382 P-QRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQR 440
P Q G G Q GP PG PG D Q G P P GPG D
Sbjct: 263 PGQDGSGGAAQPGP-------PG--PPGPPGNDGQPG-------GPGQ-PG-GPGQD--G 302
Query: 441 GQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRGG 499
G G D P P R P G G P Y + R+ SG GG
Sbjct: 303 GPGTDAAYCPC--PPR------TPAGGGGGGDFPAGGGGGGYSTGGGGGRADSGGAAGG 353
>WB|WBGene00000251 [details] [associations]
symbol:bli-1 species:6239 "Caenorhabditis elegans"
[GO:0042302 "structural constituent of cuticle" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040002 "collagen and
cuticulin-based cuticle development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0005578 "proteinaceous
extracellular matrix" evidence=ISS] [GO:0042329 "structural
constituent of collagen and cuticulin-based cuticle" evidence=ISS]
InterPro:IPR002486 InterPro:IPR012613 Pfam:PF01484 Pfam:PF08175
SMART:SM01088 GO:GO:0009792 GO:GO:0002119 GO:GO:0018996
GO:GO:0005578 GO:GO:0040011 GO:GO:0000003 GO:GO:0005581
InterPro:IPR008160 Pfam:PF01391 eggNOG:NOG12793 GO:GO:0040002
EMBL:Z46791 PIR:T19140 RefSeq:NP_496311.2 ProteinModelPortal:Q09457
STRING:Q09457 PaxDb:Q09457 EnsemblMetazoa:C09G5.6 GeneID:174653
KEGG:cel:CELE_C09G5.6 UCSC:C09G5.6 CTD:174653 WormBase:C09G5.6
GeneTree:ENSGT00690000102663 HOGENOM:HOG000016778 InParanoid:Q09457
OMA:WEEHRKS NextBio:884926 GO:GO:0042601 GO:GO:0042329
GO:GO:0030436 Uniprot:Q09457
Length = 948
Score = 136 (52.9 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 89/338 (26%), Positives = 120/338 (35%)
Query: 197 FYNDHLESLQVMEK--NYITMATEVEKLRAELMNAPNVDRRAA----DGSYGGATGNSEN 250
FY++ E L + N I E E+ A + DR +G Y T
Sbjct: 36 FYSEAQEELVEFKDIANNIWEEMVFELTPEEMREAEDNDREKRSYEPEGPYQSETTTPST 95
Query: 251 ETSGRPVGQNAYED--GYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAY 308
TS A ED GY +GPP S P T A + T + Y
Sbjct: 96 TTSTAATTTEAAEDESGYDFVNDNGPPSSRPRKPEPPTMPRTIQGFRAPPPAAT---STY 152
Query: 309 DIPRGPGYEASKGPGYDASKAPSYDPTKGPSYD-PAKGPG-----YDPTKGP--GYDAQK 360
P G Y+ + G +S+ P Y P + PS P P Y+P P GY
Sbjct: 153 RPPHGSNYD-NYGREPASSRRP-YPPQQPPSTSAPHSSPNNRTSLYNPQPPPKTGYPTNP 210
Query: 361 GSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGP--GYET--QRVPG----Y 412
Y+ + PNY R P+Y Y R PN R P GY++ Q P Y
Sbjct: 211 RVPYNPPQ-PNYT--RQPTYPEDNRAPYKPTRSPNTPPPRQPSGGYDSDGQTPPSSPRIY 267
Query: 413 DVQR----GPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAA 468
+ +R GP Y + P+ P PG QR R P+ +R P
Sbjct: 268 NTRRPNNHGPGYPEDQVPTAPPV--PGQ--QRVPPTQTRNPPNPTNTRQPSRPVPPTSDG 323
Query: 469 PHGQVPPPLN-NVPYGSATPPARSGSG--QPRGGNPAR 503
H + P N + Y + + G G +PR G R
Sbjct: 324 -HIEATTPYNPSAQYPTGKRGSHPGFGPQRPRPGTRPR 360
Score = 131 (51.2 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 76/266 (28%), Positives = 102/266 (38%)
Query: 256 PVGQNAYEDGYGVPQGHG----PPPSATTAGVVGAGPNTSTSAY---AATQSGTPM--RA 306
P G N Y D YG PP + + PN TS Y ++G P R
Sbjct: 155 PHGSN-Y-DNYGREPASSRRPYPPQQPPSTSAPHSSPNNRTSLYNPQPPPKTGYPTNPRV 212
Query: 307 AYDIPRGPGYEASKGPGY-DASKAPSYDPTKGPSYDPAKGP--GYD-----PTKGPG-YD 357
Y+ P+ P Y ++ P Y + ++AP Y PT+ P+ P + P GYD P P Y+
Sbjct: 213 PYNPPQ-PNY--TRQPTYPEDNRAP-YKPTRSPNTPPPRQPSGGYDSDGQTPPSSPRIYN 268
Query: 358 AQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRG 417
++ +N+ GP Y + P+ P G QR P + P R P V
Sbjct: 269 TRRPNNH----GPGYPEDQVPTAPPVPG----QQRVPPTQTRNPPNPTNTRQPSRPVPPT 320
Query: 418 PVYEAQRAPSYIPQRGPGYDL-QRGQ--GYDMRRA-PSYDPSRGTGFDGAPRGAAP-HGQ 472
+ Y P Y +RG G+ +R P P RG D A P H
Sbjct: 321 SDGHIEATTPYNPSAQ--YPTGKRGSHPGFGPQRPRPGTRP-RGNPCDQC--SAQPNHCP 375
Query: 473 VPPPLNNVPYGSATPPARSGSGQPRG 498
PP P G PP G PRG
Sbjct: 376 SGPP---GPRGRPGPPGFPGQDGPRG 398
Score = 128 (50.1 bits), Expect = 0.00015, P = 0.00015
Identities = 75/261 (28%), Positives = 95/261 (36%)
Query: 235 RAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGA-GPNTSTS 293
R DG+ G G + GQ+ G P HG S T G G G N +
Sbjct: 431 RGPDGT-PGVPGEDGIDGEQGVNGQDGQPGAPGAPGYHGMNGSPGTPGKPGLPGRNGQSC 489
Query: 294 AYAATQSGTPMRAAYDIPRGPGYEASKGP-GYDASKA----PSYDPTKGPSYDPA-KGPG 347
G P +P G + G G D S P D T GP P PG
Sbjct: 490 KSIPGPPGQP--GVMGVPGRDGDPGTDGEHGQDGSPGIQGPPGRDGTSGPDGQPGVSAPG 547
Query: 348 YDPTKGPGYDA--QKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYE 405
T G GY ++ S +D N D RG + R GYD +R + P +
Sbjct: 548 APGTDG-GYCPCPKRSSKFDFNDAYNDDEKRG--LEEHRPRGYDSERAE----EPRPR-Q 599
Query: 406 TQRVPGYDVQRGPVYEAQRAPSY------IPQRGPGY-DLQRGQGYDMRRAPSYDPSRGT 458
T R YD G E QR P+Y P R Y D +R + +R P P R T
Sbjct: 600 TVRTNTYDENSGA--EHQRRPNYEPSAEVAPPRQDRYEDEERVREPPPKRPPP--PHRQT 655
Query: 459 GFDGAPRGAAPHGQVPPPLNN 479
+ P P+ + PPP N
Sbjct: 656 PHELYPE-EQPYVRRPPPPQN 675
Score = 122 (48.0 bits), Expect = 0.00065, P = 0.00065
Identities = 71/243 (29%), Positives = 88/243 (36%)
Query: 274 PPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYD 333
P P + + P ++ Y + G+ PR PG P S P++
Sbjct: 316 PVPPTSDGHIEATTPYNPSAQYPTGKRGSHPGFGPQRPR-PGTRPRGNPCDQCSAQPNHC 374
Query: 334 PTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPN--YDIHRGPSYDPQRG-----L 386
P+ GP P PG P PG D +G RG N Y + SYDP G +
Sbjct: 375 PS-GPP-GPRGRPG--PPGFPGQDGPRGL-----RGLNGGYSGVQPSSYDPVIGCVQCPI 425
Query: 387 GYDMQRGPNYDMQRG-PGYE----TQRVPGYDVQRG----PVYEAQRAPSYIPQRGPGYD 437
G +RGP D G PG + Q V G D Q G P Y P + PG
Sbjct: 426 GPPGERGP--DGTPGVPGEDGIDGEQGVNGQDGQPGAPGAPGYHGMNGSPGTPGK-PGLP 482
Query: 438 LQRGQGYDMRRAPSYDPS-RGT-GFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQ 495
+ GQ P P G G DG P HGQ P G PP R G+
Sbjct: 483 GRNGQSCKSIPGPPGQPGVMGVPGRDGDPGTDGEHGQDGSP------GIQGPPGRDGTSG 536
Query: 496 PRG 498
P G
Sbjct: 537 PDG 539
>UNIPROTKB|J9P0L0 [details] [associations]
symbol:COL3A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005581 "collagen" evidence=IEA] [GO:0005201
"extracellular matrix structural constituent" evidence=IEA]
InterPro:IPR000885 InterPro:IPR001007 Pfam:PF00093 Pfam:PF01410
ProDom:PD002078 PROSITE:PS01208 PROSITE:PS50184 PROSITE:PS51461
SMART:SM00038 SMART:SM00214 GO:GO:0005581 InterPro:IPR008160
Pfam:PF01391 GO:GO:0005201 GeneTree:ENSGT00660000095287 KO:K06236
CTD:1281 EMBL:AAEX03017880 RefSeq:XP_851009.1
Ensembl:ENSCAFT00000047312 GeneID:478835 KEGG:cfa:478835
Uniprot:J9P0L0
Length = 1465
Score = 138 (53.6 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 85/297 (28%), Positives = 107/297 (36%)
Query: 226 LMNAPNVDRRAADGSYGGATG-NSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVV 284
L P + G G E+ + G P G+ D G P GPP +A G
Sbjct: 640 LQGLPGTSGPPGENGKPGEPGPKGESGSPGVPGGKG---DS-GAPGERGPPGAAGPMGPR 695
Query: 285 G-AGPNTSTSAYAAT-------QSGTP----MRAAYDIPRGPGYEASKG-PGY-DASKAP 330
G AGP A +GTP M P GPG + KG PG A AP
Sbjct: 696 GGAGPPGPEGGKGAAGPPGPPGSAGTPGLQGMPGERGGPGGPGPKGDKGEPGSAGADGAP 755
Query: 331 SYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGS-NYDAQRGPNYDIHRGPSYDPQRGLGYD 389
D +GP+ P PG P PG + G+ GP + P G+
Sbjct: 756 GKDGPRGPT-GPIGPPG--PAGQPGDKGEGGAPGLPGIAGPRGGPGERGEHGPPGPAGFP 812
Query: 390 MQRGPNYDMQRGPGYETQR-VPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRR 448
G N + PG + +R PG + GP A P PG +G+ R
Sbjct: 813 GAPGQNGE----PGAKGERGAPGEKGEGGPPGVAGPPGGAGPAGPPGPQGVKGE----RG 864
Query: 449 APSYDPSRGTGFDGAPRGAAPHGQVPPPLNNV---PYGSATPPARSGSGQPRGGNPA 502
+P G G G P G G PP NN P GS+ P + G P G N A
Sbjct: 865 SPG-----GPGAAGFPGGRGLPG---PPGNNGNPGPPGSSGAPGKDGPPGPPGNNGA 913
Score = 133 (51.9 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 84/286 (29%), Positives = 103/286 (36%)
Query: 231 NVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGA-GP- 288
+V A G GG G + P G + + G P GPP AG G GP
Sbjct: 159 DVKAGVAGGGIGGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPAGPPGPP 218
Query: 289 ---NTSTSAYAATQSGTPMRAAY-DIPRGPGYEASKG-PGYDASKAP-SYDPTKGPSYDP 342
S A +SG P R +P PG + G PG+ K +D G D
Sbjct: 219 GAMGPSGPAGKDGESGRPGRPGERGLPGPPGMKGPAGMPGFPGMKGHRGFDGRNGEKGDT 278
Query: 343 AKGPGYDPTKG-PGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGL-GYDMQRGPNYDMQR 400
PG G PG + G RG + R P G G D RG D Q
Sbjct: 279 G-APGLKGENGLPGENGAPGPM--GPRGAPGERGR-PGLPGAAGARGNDGARGS--DGQP 332
Query: 401 GP-GYE-TQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGT 458
GP G T PG +G V A S PG QRG+ A + P
Sbjct: 333 GPPGPPGTAGFPGSPGAKGEVGPAGSPGS---NGSPG---QRGEPGPQGHAGAPGPPGPP 386
Query: 459 GFDGAPRGAAPHGQVPPPLNNVP--YGSATPPARSGS-GQP--RGG 499
G +G+P G G P + P G+ PP G+ G P RGG
Sbjct: 387 GSNGSPGGKGEMG--PAGIPGAPGLIGARGPPGPPGTNGAPGQRGG 430
Score = 123 (48.4 bits), Expect = 0.00084, P = 0.00084
Identities = 78/261 (29%), Positives = 98/261 (37%)
Query: 258 GQNAYEDGYGVPQGHGPPPSATTAGVVGA----GPNTSTSAYAAT-QSGTPMRAAY-DIP 311
G + G P GPP +A G GA GP S + + Q G P + P
Sbjct: 321 GNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGSPGQRGEPGPQGHAGAP 380
Query: 312 RGPGYEASKG-PGYDASKAPSYDPTKGPSYDPAKGPGYDP-TKG-PGYDAQKGS-NYDAQ 367
PG S G PG P+ P P A+GP P T G PG G +
Sbjct: 381 GPPGPPGSNGSPGGKGEMGPAGIPG-APGLIGARGPPGPPGTNGAPGQRGGAGEPGKNGA 439
Query: 368 RG-PNYDIHRGPSYDPQ-RG-LGYDMQRG-PNYDMQRG-PGYETQR-VPGYDVQRGPV-- 419
+G P RG + P G G D + G P G PG +R PG+ RGP
Sbjct: 440 KGEPGPRGERGEAGSPGIPGPKGEDGKDGSPGEPGANGLPGAAGERGAPGF---RGPAGA 496
Query: 420 --YEAQRAPSYIPQRGPGYDLQRGQ-GYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPP 476
++ P+ + GPG RG G R P G G+P G G+ PP
Sbjct: 497 NGLPGEKGPAG-ERGGPGPAGPRGAPGEPGRDGVPGGPGM-RGMPGSPGGPGSDGKPGPP 554
Query: 477 LNNVPYGSATPPARSGS-GQP 496
+ G PP SG GQP
Sbjct: 555 GSQGESGRPGPPGPSGPRGQP 575
>UNIPROTKB|F1NI73 [details] [associations]
symbol:COL3A1 "Collagen alpha-1(III) chain" species:9031
"Gallus gallus" [GO:0005201 "extracellular matrix structural
constituent" evidence=IEA] [GO:0005581 "collagen" evidence=IEA]
InterPro:IPR000885 InterPro:IPR001007 Pfam:PF00093 Pfam:PF01410
ProDom:PD002078 PROSITE:PS01208 PROSITE:PS50184 PROSITE:PS51461
SMART:SM00038 SMART:SM00214 GO:GO:0005581 InterPro:IPR008160
Pfam:PF01391 GO:GO:0005201 GeneTree:ENSGT00660000095287
EMBL:AADN02034558 EMBL:AADN02034559 IPI:IPI01017330
Ensembl:ENSGALT00000004032 ArrayExpress:F1NI73 Uniprot:F1NI73
Length = 1260
Score = 137 (53.3 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 83/280 (29%), Positives = 109/280 (38%)
Query: 243 GATGN-SENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGA-GP-NTSTSAYAATQ 299
GA G +N G P G+ G+P +G P AG G+ GP S A Q
Sbjct: 465 GANGEPGQNGVPGTP-GERGSPGFRGLPGSNGLPGEKGPAGERGSPGPPGPSGPAGDRGQ 523
Query: 300 SGTP----MRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGP- 354
G P MR IP PG + GP + + P GP+ P PG GP
Sbjct: 524 DGGPGLPGMRGLPGIPGSPGSDGKPGPPGNQGE-PGRSGPPGPA-GPRGQPGVMGFPGPK 581
Query: 355 GYDAQKGSNYDAQRGPNYDIHR-GPS-YDPQRGL-GYDMQRGPNYDM-QRGPGYET--QR 408
G + G N +RGP GP+ + GL G GP D + GP Q
Sbjct: 582 GNEGAPGKN--GERGPGGPPGTPGPAGKNGDVGLPGPPGPAGPAGDRGEPGPSGSPGLQG 639
Query: 409 VPGYDVQRGPVYEAQRAPSYIPQR---GPGYDLQRGQ-GYDMRRAPSYDPSRGTGFDGAP 464
+PG GP E + P+ GPG+ +G+ G R + P TG G P
Sbjct: 640 LPGGP---GPAGENGKPGEPGPKGDIGGPGFPGPKGENGIPGERG-AQGPPGPTGARGGP 695
Query: 465 RGAAPHG-QVPPPLNNVPYGSATPPARSGSGQPRG--GNP 501
A G + PP P G+ P + G+ RG G+P
Sbjct: 696 GPAGSEGAKGPPGPPGAPGGTGLPGLQGMPGE-RGASGSP 734
Score = 123 (48.4 bits), Expect = 0.00071, P = 0.00071
Identities = 84/275 (30%), Positives = 104/275 (37%)
Query: 253 SGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPR 312
+G P G G+P G P G+ G P TS + A G P +
Sbjct: 386 AGSP-GNKGEMGPSGIPGAPGLPGGR---GLPGP-PGTSGNPGAKGTPGEPGKNGAKGDP 440
Query: 313 GP-GYEASKG-PGYDASKAPSYDPTKGPSYDPAKG--PGYDPTKG-PGYDAQKGSN-YDA 366
GP G G PG A P + +G + +P + PG +G PG+ GSN
Sbjct: 441 GPKGERGENGTPG--APGPPGEEGKRGANGEPGQNGVPGTPGERGSPGFRGLPGSNGLPG 498
Query: 367 QRGPNYDIHR----GPSYDPQRGLGYDMQRGPNYDMQRG-PGYETQRVPGYDVQRGPVYE 421
++GP + GPS P G D GP RG PG PG D + GP
Sbjct: 499 EKGPAGERGSPGPPGPS-GPAGDRGQD--GGPGLPGMRGLPGIPGS--PGSDGKPGPPGN 553
Query: 422 AQRAPSYIPQRGP-GYDLQRG-QGYDMRR----APSYDPSRGTGFD-GAPRGAAPHGQV- 473
Q P GP G Q G G+ + AP + RG G G P A +G V
Sbjct: 554 -QGEPGRSGPPGPAGPRGQPGVMGFPGPKGNEGAPGKNGERGPGGPPGTPGPAGKNGDVG 612
Query: 474 -P-PPLNNVPYGSATPPARSGS----GQPRGGNPA 502
P PP P G P SGS G P G PA
Sbjct: 613 LPGPPGPAGPAGDRGEPGPSGSPGLQGLPGGPGPA 647
Score = 122 (48.0 bits), Expect = 0.00091, P = 0.00091
Identities = 80/269 (29%), Positives = 105/269 (39%)
Query: 256 PVGQNAYEDGYGVPQGHGPPPSATTAGVVG-AGPNTSTSAYAATQSGTPMRAA-YDIPRG 313
P G N Y+ G P GP AG++G AGP + G P R IP
Sbjct: 190 PPGSNGYQGPPGEPGQPGPSGPPGPAGMIGPAGPPGKDG-----EPGRPGRNGDRGIPGL 244
Query: 314 PGYEASKG-PGYDASK-APSYDPTKGPSYDPAKGPGYDPTKG-PGYDAQKGSNYDAQRGP 370
PG++ G PG K A +D G D PG G PG + G RGP
Sbjct: 245 PGHKGHPGMPGMPGMKGARGFDGKDGAKGDSG-APGPKGEAGQPGANGSPGQ--PGPRGP 301
Query: 371 NYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGP-------GYETQRVPGYDVQRGPVYEAQ 423
+ RG +P + Y + +GP G+ PG+ + GP A
Sbjct: 302 TGE--RGRPGNPGGPVTYRCDIVVFLSLFKGPPGPPGTAGFPGS--PGFKGEAGPPGPAG 357
Query: 424 RAPSYIP-QRG-PGYDLQRG----QGYDMRR-APSYDPSRG-TGFDGAPRGAAPHGQ-VP 474
+ S P +RG PG Q G QG R +P G +G GAP P G+ +P
Sbjct: 358 ASGS--PGERGEPGPQGQAGPPGPQGPPGRAGSPGNKGEMGPSGIPGAP--GLPGGRGLP 413
Query: 475 PPLNNVPYGSATPPARSGSGQPRGGNPAR 503
P P S P A+ G+P G N A+
Sbjct: 414 GP----PGTSGNPGAKGTPGEP-GKNGAK 437
>UNIPROTKB|F1RXW0 [details] [associations]
symbol:COL5A2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071230 "cellular response to amino acid stimulus"
evidence=IEA] [GO:0048592 "eye morphogenesis" evidence=IEA]
[GO:0046332 "SMAD binding" evidence=IEA] [GO:0043588 "skin
development" evidence=IEA] [GO:0030199 "collagen fibril
organization" evidence=IEA] [GO:0005588 "collagen type V"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=IEA] [GO:0005201 "extracellular matrix structural
constituent" evidence=IEA] InterPro:IPR000885 Pfam:PF01410
ProDom:PD002078 PROSITE:PS51461 SMART:SM00038 GO:GO:0043588
GO:GO:0030199 GO:GO:0001501 InterPro:IPR008160 Pfam:PF01391
GO:GO:0071230 GO:GO:0005201 GO:GO:0048592
GeneTree:ENSGT00660000095287 GO:GO:0005588 OMA:PDHKPVW
EMBL:CU467671 Ensembl:ENSSSCT00000017460 ArrayExpress:F1RXW0
Uniprot:F1RXW0
Length = 1269
Score = 137 (53.3 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 87/295 (29%), Positives = 109/295 (36%)
Query: 232 VDRRAADGSYG--GATGNSENETSGRPVGQNAYEDGYGVPQGH-GPPPSATTAGVVGAGP 288
+ + A+G+ G GA G P G E G P+G GPP S G G
Sbjct: 552 IGEKGAEGTAGNDGARGLPGPLGPPGPAGPTG-EKGEPGPRGLVGPPGSRGNPGSRGENG 610
Query: 289 NTSTSAYAATQS--GTP-MRAAYDIPRGPGYEASKGP-GYDASKAPSYDPTKGPSYDPAK 344
T +A Q G P ++ P G S GP G S P + P P +
Sbjct: 611 PTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGP-HGPNGVPGLKGGR 669
Query: 345 GPGYDP--TKGPGYDAQKGS-NYDAQRGPNYDIHRGPSYDPQRGLGYDM-------QRGP 394
G P T PG + G GP + P + GL D RGP
Sbjct: 670 GTQGPPGATGFPGSAGRVGPPGPTGAPGPAGPLGE-PGKEGPPGLRGDPGSHGRVGDRGP 728
Query: 395 NYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIP-QRG-PGYDLQRGQ-GYDMRRAPS 451
GPG + PG D Q GP + P+ QRG G QRG+ G P+
Sbjct: 729 A-GPPGGPGDKGD--PGEDGQPGP--DGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPA 783
Query: 452 YDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGS-GQP-RGGNPARR 504
P + G GAP P G V PP +N P G P +G+ G P R G R
Sbjct: 784 GTPGK-VGPTGAPGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGER 837
>UNIPROTKB|Q28009 [details] [associations]
symbol:FUS "RNA-binding protein FUS" species:9913 "Bos
taurus" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001876 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00641 PROSITE:PS01358 PROSITE:PS50102
PROSITE:PS50199 SMART:SM00360 SMART:SM00547 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003723
eggNOG:NOG240581 GeneTree:ENSGT00530000063105 KO:K13098
HOGENOM:HOG000038010 CTD:2521 EMBL:U26024 EMBL:BC119965
IPI:IPI00705463 RefSeq:NP_776337.1 UniGene:Bt.2474
ProteinModelPortal:Q28009 STRING:Q28009 PRIDE:Q28009
Ensembl:ENSBTAT00000007571 GeneID:280796 KEGG:bta:280796
InParanoid:Q28009 OrthoDB:EOG4DV5NH NextBio:20804952 Uniprot:Q28009
Length = 513
Score = 132 (51.5 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 67/237 (28%), Positives = 93/237 (39%)
Query: 239 GSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAAT 298
G+Y G ++ S +P GQ +Y GYG ++ +G G NT S +A
Sbjct: 15 GAYPTQPGQGYSQQSNQPYGQQSY-GGYGQSTDTSGYGQSSYSGSYGQTQNTGYSTQSAP 73
Query: 299 QSGTPMRAAYDIPRGP--GY-EASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPG 355
Q G Y + Y + S PGY APS T G ++ GY +G G
Sbjct: 74 Q-GYSSAGGYGSSQSSQSSYGQQSSYPGYGQQPAPS--GTSGSYGSSSQSSGYGQPQGGG 130
Query: 356 YDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPG--YETQRVPGYD 413
Y Q G Y Q+ +Y + SY+P +G G Q + G G Y +
Sbjct: 131 YGQQSG--YGGQQ-QSYGQQQ--SYNPPQGYGQQSQYNSSGGGGGGGGGSYGQDQPSMSS 185
Query: 414 VQRGPVYEAQ-RAPSY---IPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRG 466
G Y Q ++ Y RG G G GY+ R + Y+P RG G RG
Sbjct: 186 GGGGGGYGNQDQSGGYGGGQQDRG-GRGRGGGGGYN-RSSGGYEP-RGRGGGRGGRG 239
>UNIPROTKB|F1RFI8 [details] [associations]
symbol:EWSR1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001876 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00641 PROSITE:PS01358 PROSITE:PS50102
PROSITE:PS50199 SMART:SM00360 SMART:SM00547 GO:GO:0005634
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063105 OMA:EGTSTGY EMBL:CU640468
EMBL:CT737304 Ensembl:ENSSSCT00000010930 Uniprot:F1RFI8
Length = 606
Score = 121 (47.7 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 54/178 (30%), Positives = 75/178 (42%)
Query: 239 GSYGGATGNSENETSGRPV-GQNAYEDGYGVPQ-GHGPP--PSATTAGVVGAGP---NTS 291
G+YG T S + GQ AY YG P G+ P P A + V G G +T+
Sbjct: 43 GTYGQPTDVSYTQAQTTATYGQTAYATSYGQPPTGYSTPTAPQAYSQPVQGYGTGAYDTT 102
Query: 292 TSAYAATQSGTPMRAAYDI-PRGPGYEASKGPGYDASKAP-SYDPTKGPSYDPAKGPGYD 349
T+ TQ+ ++AY P P Y + P A+ AP SY T+ SYD + +
Sbjct: 103 TATVTTTQASYAAQSAYGTQPAYPAY--GQQP---AATAPASYSSTQPTSYDQSSYSQQN 157
Query: 350 PTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQ 407
P Q+ S+Y Q +Y SY PQ G Y + P+ Q+ Y Q
Sbjct: 158 TYGQPSSYGQQ-SSYGQQS--SYGQQPPTSYPPQTG-SYS--QAPSQYSQQSSSYGQQ 209
Score = 57 (25.1 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 19/46 (41%), Positives = 21/46 (45%)
Query: 465 RGAAP--HGQ-VPPPLNNVPYGSATP--PA--RSGSGQPRGGNPAR 503
RG P G+ +PPPL P G P P G G RGG P R
Sbjct: 404 RGGMPPREGRGMPPPLRGGPGGPGGPGGPMGRMGGRGGDRGGFPPR 449
Score = 49 (22.3 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 25/86 (29%), Positives = 33/86 (38%)
Query: 422 AQRAPSYIPQRGPGYDLQRGQGYD--MRRAPSYDPSRGTGFDGAPRG-----AAPHGQVP 474
A++ P RG G + G+G +R P G G G P G G P
Sbjct: 394 ARKKPPMNSMRG-GMPPREGRGMPPPLRGGPG-----GPGGPGGPMGRMGGRGGDRGGFP 447
Query: 475 PPLNNVPYGSATPPARSGSGQPRGGN 500
P P GS P+ G+ Q R G+
Sbjct: 448 P---RGPRGSRGNPSGGGNVQHRAGD 470
>UNIPROTKB|E2RS29 [details] [associations]
symbol:E2RS29 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063105 EMBL:AAEX03026460
Ensembl:ENSCAFT00000019701 Uniprot:E2RS29
Length = 538
Score = 132 (51.5 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 76/285 (26%), Positives = 103/285 (36%)
Query: 239 GSYGGATGNSENETSGRPV-GQNAYEDGYGVPQ-GHGPP--PSATTAGVVG--AGP-NTS 291
G+YG T S + GQ AY YG P G+ P P A + V G G +T+
Sbjct: 42 GTYGQPTDVSYTQAQTTATYGQTAYATSYGQPPAGYTTPTAPQAYSQPVQGYSTGAYDTT 101
Query: 292 TSAYAATQSGTPMRAAYDI-PRGPGY---EASKGPG--YDASK-APSYDP--TKGPSYDP 342
T+ TQ+ ++AY P P Y A+ P D +K A + P + G P
Sbjct: 102 TATVTTTQASYEAQSAYGTQPAYPAYGQQPAATAPARPQDGNKPAETSQPQSSTGGYNQP 161
Query: 343 AKGPG---YDPTKGPG-YDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDM 398
+ G G Y + PG Y Q + + +Y + SYD Q G G
Sbjct: 162 SLGYGQSNYSYPQVPGSYPMQPVTAPPSYPPTSYSSTQPTSYDQQNTYGQPSSYGQQSSY 221
Query: 399 QRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGT 458
+ Y Q Y Q G Y +APS Q+ Y Q D R+
Sbjct: 222 GQQSSYGQQLPTSYPPQTGS-YS--QAPSQYSQQSSSYGQQSSFQQDHPRSMGVYGQESG 278
Query: 459 GFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRGGNPAR 503
GF + G P + +R G G RGG AR
Sbjct: 279 GFSRPGENRSMSGPDNPGRGRGGFDRGDM-SRGGRGGGRGGMGAR 322
>UNIPROTKB|P0CG41 [details] [associations]
symbol:CTAGE8 "Cutaneous T-cell lymphoma-associated antigen
8" species:9606 "Homo sapiens" [GO:0016021 "integral to membrane"
evidence=IEA] GO:GO:0016021 HPA:HPA000387 HPA:HPA000922
EMBL:AC004889 UniGene:Hs.661442 IPI:IPI00969223
ProteinModelPortal:P0CG41 PhosphoSite:P0CG41 DMDM:300680906
PRIDE:P0CG41 Ensembl:ENST00000487179 GeneCards:GC07M143963
HGNC:HGNC:37294 neXtProt:NX_P0CG41 OMA:LERELMV ArrayExpress:P0CG41
Bgee:P0CG41 Uniprot:P0CG41
Length = 777
Score = 134 (52.2 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 107/459 (23%), Positives = 179/459 (38%)
Query: 56 ASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSER---ELQMRNLT 112
A +V ++ L E + + + ++ L Q ++SE E + + L
Sbjct: 322 AKLNVSLKSLEGERNHIIIQLSEVDKTKEELTEHIKNLQTQQASLQSENIYFESENQKLQ 381
Query: 113 EKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPA 172
+K+ K+ E +KL ++K E +N + EE +++V + + RA ++
Sbjct: 382 QKL-KIMTEFYQENEMKL-YRKLTVE-ENYRIEEEEKLSRVEE---KISRATEGLETYRK 435
Query: 173 LLSELES-LRQEYH-HCRGTYEYEKKFYNDHLESLQVMEKNYITMATE----VEKL-RAE 225
L +LE L + H + + YEK+ +++ L + + E+N + E +KL E
Sbjct: 436 LAKDLEEELERTVHFYQKQVISYEKRGHDNWLAA-RTAERNLSDLRKENAHNKQKLTETE 494
Query: 226 L-MNAPNVDRRAADGSYGGATGNSENETSGRPVGQNAYED-GYGVPQGHGPPPSATTAGV 283
L D A D S A G + S P+G+ + E + PQ P + +
Sbjct: 495 LKFELLEKDPNALDVS-NTAFGREHSPCSPSPLGRPSSETRAFPSPQTLLEDPLRLSPVL 553
Query: 284 VGAGPNTSTSAYAATQSGTPMRAAYDIPRG-PGYEA----SKGPGYDASKAPSYDPTKGP 338
G G +S G P+ RG P Y+ + P S + + +
Sbjct: 554 PGGGGRGPSSP------GNPLDHQITNERGEPSYDRLIDPHRAPSDTGSLSSPVEQDRRM 607
Query: 339 SYDPAKGPGY-DPTKGPGYDAQKGSNYDAQRGPNYD-IHRGPSYDPQ-RGLGYDMQRGPN 395
+ P G Y D T P + + SN + GP + S D R + +M+ N
Sbjct: 608 MFPPP-GQSYPDSTLPPQREDRFYSNSERLSGPAEPRSFKMTSLDKMDRSMPSEMESSRN 666
Query: 396 YDMQRGPG---YETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSY 452
D + G +P + GP + P P RGP + + +G MRR P +
Sbjct: 667 -DAKDDLGNLNVPDSSLPAENEATGPGFIP---PPLAPVRGPLFPVDT-RGPFMRRGPPF 721
Query: 453 DPSR-GTGFDGAPRGAAPHGQVPPPLNNVPYGSAT--PP 488
P GT F GA RG P P P + P+ PP
Sbjct: 722 PPPPPGTMF-GASRGYFPPRDFPGP-PHAPFAMRNIYPP 758
>ZFIN|ZDB-GENE-040426-1010 [details] [associations]
symbol:fus "fusion (involved in t(12;16) in
malignant liposarcoma)" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR000504
InterPro:IPR001876 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00641
PROSITE:PS01358 PROSITE:PS50102 PROSITE:PS50199 SMART:SM00360
SMART:SM00547 ZFIN:ZDB-GENE-040426-1010 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GeneTree:ENSGT00530000063105 KO:K13098 CTD:2521 EMBL:BX571714
IPI:IPI00785727 RefSeq:NP_957377.2 UniGene:Dr.114403
Ensembl:ENSDART00000055340 GeneID:394058 KEGG:dre:394058
NextBio:20815017 Bgee:F1R0M4 Uniprot:F1R0M4
Length = 541
Score = 132 (51.5 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 63/241 (26%), Positives = 88/241 (36%)
Query: 240 SYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQ 299
SYGG N +E+S P Q Y YG Q G A + G + + S+ Y+ T
Sbjct: 37 SYGGY--NQSSESSSAPYNQGGYSSNYGQSQSGGYGSQAPSQGYSQSSQSYSSGGYSNTS 94
Query: 300 SGTPMRAAYDIPRGPGY-EASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTK-GPGYD 357
P ++ GY + S GY+ S +P+ P S + G G + G GY
Sbjct: 95 QPPPAQSG-------GYSQQSSYSGYNQS-SPASAPGGYSSSSQSSGYGQQQQQSGGGYG 146
Query: 358 AQKGSN--YDAQRGPNYDIH-RGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRV---PG 411
G + Y + G + G + + G PNY Y Q G
Sbjct: 147 GSGGQSGGYGSSGGQSSGFGGSGGQHQSSQSGGGSYSPSPNYSSPPPQSYGQQSQYGQGG 206
Query: 412 YDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHG 471
Y+ P+ Y Q G GY Q G+G R + GFD RG P G
Sbjct: 207 YNQDSPPMSGGGGGGGYGGQDG-GYS-QDGRG-GRGRGGGFGGRGAGGFDRGGRGG-PRG 262
Query: 472 Q 472
+
Sbjct: 263 R 263
>ZFIN|ZDB-GENE-070912-607 [details] [associations]
symbol:col11a1b "collagen, type XI, alpha 1b"
species:7955 "Danio rerio" [GO:0005201 "extracellular matrix
structural constituent" evidence=IEA] [GO:0005581 "collagen"
evidence=IEA] InterPro:IPR000885 Pfam:PF01410 ProDom:PD002078
PROSITE:PS51461 SMART:SM00038 ZFIN:ZDB-GENE-070912-607
Gene3D:2.60.120.200 InterPro:IPR008985 InterPro:IPR013320
SUPFAM:SSF49899 GO:GO:0005581 InterPro:IPR008160 Pfam:PF01391
InterPro:IPR001791 SMART:SM00282 Pfam:PF02210 GO:GO:0005201
HOGENOM:HOG000085654 SMART:SM00210 GeneTree:ENSGT00700000104155
UniGene:Dr.3536 EMBL:BX510342 EMBL:BX547933 EMBL:CT583637
EMBL:GQ485665 IPI:IPI00511026 RefSeq:NP_001171883.1
UniGene:Dr.42128 Ensembl:ENSDART00000049589 GeneID:555202
KEGG:dre:555202 CTD:555202 NextBio:20880850 Uniprot:D6MUD3
Length = 1815
Score = 138 (53.6 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 71/250 (28%), Positives = 100/250 (40%)
Query: 267 GVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDA 326
G P HG P G G + T P RA + +GP A + A
Sbjct: 469 GSPGLHGDPGERGPPGRPGLPGGDGAPGPSGTILMLPFRAGGESSKGPVVSAQEAQA-QA 527
Query: 327 SKAPSYDPTKGPSYDPAKGPGYD-PTKGPGYDAQKGSNYDA-QRGPNYDIHRGPSYDP-- 382
A + +GP P G P GPG KG + D+ +GP +GP+ P
Sbjct: 528 ILAQARLTMRGPP-GPMGLTGRSGPVGGPGAPGAKGESGDSGPQGPRG--LQGPTGSPGK 584
Query: 383 --QRGL-GYDMQRG-PNYDMQRGP-GYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYD 437
+RG G D RG P +G G++ +PG ++G + ++ P +P PG D
Sbjct: 585 PGKRGRNGADGARGIPGESGAKGDRGFDG--LPGLPGEKG--HRGEQGPIGLPG-SPGED 639
Query: 438 LQRGQGYDM--RRAPSYDPSRGT-GFDGAPRGAAPHGQV----PP-PLNNV-PYGSATPP 488
RG+ ++ R P RG G G+P A G PP P N+ P G PP
Sbjct: 640 GPRGEDGEIGQRGMPGESGPRGLLGPRGSPGTAGQRGLTGLDGPPGPKGNMGPQGEPGPP 699
Query: 489 ARSGSGQPRG 498
+ G+ P G
Sbjct: 700 GQQGNTGPHG 709
>UNIPROTKB|F1N2Y2 [details] [associations]
symbol:COL5A2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071230 "cellular response to amino acid stimulus"
evidence=IEA] [GO:0048592 "eye morphogenesis" evidence=IEA]
[GO:0046332 "SMAD binding" evidence=IEA] [GO:0043588 "skin
development" evidence=IEA] [GO:0030199 "collagen fibril
organization" evidence=IEA] [GO:0005588 "collagen type V"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=IEA] [GO:0005201 "extracellular matrix structural
constituent" evidence=IEA] InterPro:IPR000885 InterPro:IPR001007
Pfam:PF00093 Pfam:PF01410 ProDom:PD002078 PROSITE:PS01208
PROSITE:PS50184 PROSITE:PS51461 SMART:SM00038 SMART:SM00214
GO:GO:0043588 GO:GO:0030199 GO:GO:0001501 InterPro:IPR008160
Pfam:PF01391 GO:GO:0071230 GO:GO:0005201 GO:GO:0048592
GeneTree:ENSGT00660000095287 GO:GO:0005588 OMA:PDHKPVW
EMBL:DAAA02003915 EMBL:DAAA02003916 EMBL:DAAA02003917
EMBL:DAAA02003918 IPI:IPI00826022 Ensembl:ENSBTAT00000038684
Uniprot:F1N2Y2
Length = 1491
Score = 137 (53.3 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 88/295 (29%), Positives = 110/295 (37%)
Query: 232 VDRRAADGSYG--GATGNSENETSGRPVGQNAYEDGYGVPQGH-GPPPSATTAGVVGAGP 288
+ + A+G+ G GA G P G E G P+G GPP S G G
Sbjct: 783 IGEKGAEGTAGNDGARGLPGPLGPPGPSGPTG-EKGEPGPRGLVGPPGSRGNPGSRGENG 841
Query: 289 NTSTSAYAATQS--GTP-MRAAYDIPRGPGYEASKGP-GYDASKAPSYDPTKGPSYDPAK 344
T +A Q G P ++ P G S GP G S P + P P +
Sbjct: 842 PTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGP-HGPNGVPGLKGGR 900
Query: 345 GPGYDP--TKGPGYDAQKGSNYDAQR-GPNYDIHRGPSYDPQRGLGYDM-------QRGP 394
G P T PG + G A GP + P + GL D RGP
Sbjct: 901 GTQGPPGATGFPGSAGRVGPPGPAGAPGPAGPLGE-PGKEGPPGLRGDPGSHGRVGDRGP 959
Query: 395 NYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIP-QRG-PGYDLQRGQ-GYDMRRAPS 451
GPG + PG D Q GP + P+ QRG G QRG+ G P+
Sbjct: 960 A-GPPGGPGDKGD--PGEDGQPGP--DGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPA 1014
Query: 452 YDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGS-GQP-RGGNPARR 504
P + G GAP P G V PP +N P G P +G+ G P R G R
Sbjct: 1015 GTPGK-VGPTGAPGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGER 1068
>UNIPROTKB|F1PG08 [details] [associations]
symbol:COL5A2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005581 "collagen" evidence=IEA] [GO:0005201
"extracellular matrix structural constituent" evidence=IEA]
InterPro:IPR000885 InterPro:IPR001007 Pfam:PF00093 Pfam:PF01410
ProDom:PD002078 PROSITE:PS01208 PROSITE:PS50184 PROSITE:PS51461
SMART:SM00038 SMART:SM00214 GO:GO:0005581 InterPro:IPR008160
Pfam:PF01391 GO:GO:0005201 GeneTree:ENSGT00660000095287
EMBL:AAEX03017882 EMBL:AAEX03017883 EMBL:AAEX03017884
Ensembl:ENSCAFT00000023545 OMA:ETCNGLD Uniprot:F1PG08
Length = 1499
Score = 137 (53.3 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 87/295 (29%), Positives = 109/295 (36%)
Query: 232 VDRRAADGSYG--GATGNSENETSGRPVGQNAYEDGYGVPQGH-GPPPSATTAGVVGAGP 288
+ + A+G+ G GA G P G E G P+G GPP S G G
Sbjct: 782 IGEKGAEGTAGNDGARGLPGPLGPPGPAGPTG-EKGEPGPRGLVGPPGSRGNPGSRGENG 840
Query: 289 NTSTSAYAATQS--GTP-MRAAYDIPRGPGYEASKGP-GYDASKAPSYDPTKGPSYDPAK 344
T +A Q G P ++ P G S GP G S P + P P +
Sbjct: 841 PTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGP-HGPNGVPGLKGGR 899
Query: 345 GPGYDP--TKGPGYDAQKGS-NYDAQRGPNYDIHRGPSYDPQRGLGYDM-------QRGP 394
G P T PG + G GP + P + GL D RGP
Sbjct: 900 GTQGPPGATGFPGSAGRVGPPGPPGAPGPAGPLGE-PGKEGPPGLRGDPGSHGRVGDRGP 958
Query: 395 NYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIP-QRG-PGYDLQRGQ-GYDMRRAPS 451
GPG + PG D Q GP + P+ QRG G QRG+ G P+
Sbjct: 959 A-GPPGGPGDKGD--PGEDGQPGP--DGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPA 1013
Query: 452 YDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGS-GQP-RGGNPARR 504
P + G GAP P G V PP +N P G P +G+ G P R G R
Sbjct: 1014 GTPGK-VGPTGAPGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGER 1067
>ZFIN|ZDB-GENE-050809-108 [details] [associations]
symbol:pygo2 "pygopus homolog 2 (Drosophila)"
species:7955 "Danio rerio" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00628 PROSITE:PS50016 SMART:SM00249
ZFIN:ZDB-GENE-050809-108 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
GeneTree:ENSGT00530000063948 CTD:90780 OrthoDB:EOG4QZ7MB
EMBL:CR628394 IPI:IPI00650328 RefSeq:NP_001028283.2
UniGene:Dr.159286 SMR:Q1L8T6 Ensembl:ENSDART00000131324
GeneID:613247 KEGG:dre:613247 InParanoid:Q1L8T6 OMA:RFGMPPQ
NextBio:20898499 Uniprot:Q1L8T6
Length = 571
Score = 132 (51.5 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 83/302 (27%), Positives = 105/302 (34%)
Query: 227 MNAPNVDRRAADGSYGGATGN-SENETSGRP-----VGQNAYEDGYGVPQ---GHGPPPS 277
M +P +R ++ S G A + SE P V N ++D +G P G G P
Sbjct: 16 MKSPEKKKRKSN-SQGAAFSHLSEFAPPPTPMVDHLVASNPFDDDFGPPSRSAGGGGPGG 74
Query: 278 ATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKG 337
AT GAG Y G M GPG S PG P P G
Sbjct: 75 ATFLPSPGAGGG----GYGGP--GR-MGGGMGFMGGPGGPGSGQPGRRPPFGPP-TPNTG 126
Query: 338 PSYDPAKG--PGYDPTKGPGYDA----QKGSNYDAQRGPNYD--IHRGPSYDPQRGLGYD 389
P + G PG+ G G G PN+ +H G ++P G
Sbjct: 127 PHHPLGFGGMPGFGGGGGGGGGGGGGFPPGGPSQFNMPPNFSPPMHPGQGFNPMLSPGA- 185
Query: 390 MQRGPNYDMQRGPGYET----QRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQR---GQ 442
M GP GP + Q+ P + Q G + + P RGP + G
Sbjct: 186 MGGGPGGG--GGPPHPRFGMPQQQPPHG-QGGHPFNSPPLPGGPGPRGPPHGPMNPMGGM 242
Query: 443 GYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPY-GSATPPARSGS--GQPRGG 499
G M G G G P GQ PPP + PY GS+ P G G P GG
Sbjct: 243 GGGMNMMGMGGGGGGGNMVGGHPGMPPQGQFPPPQDG-PYPGSSPPVGEEGKNFGGPGGG 301
Query: 500 NP 501
P
Sbjct: 302 PP 303
>UNIPROTKB|J9P8I1 [details] [associations]
symbol:CROCC "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051297 "centrosome organization"
evidence=IEA] [GO:0035253 "ciliary rootlet" evidence=IEA]
InterPro:IPR026733 GO:GO:0051297 GO:GO:0035253
GeneTree:ENSGT00700000104019 PANTHER:PTHR23159:SF5
EMBL:AAEX03001849 Ensembl:ENSCAFT00000047339 Uniprot:J9P8I1
Length = 2015
Score = 116 (45.9 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 38/135 (28%), Positives = 69/135 (51%)
Query: 51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG--GMKSERELQM 108
+E++ S E ++L T+ + L LR+EL AQ Q+ GQ G + E
Sbjct: 1147 LERQRESSTREAEELRTQLRLLEDARDGLRRELLEAQR--QVREGQDGREAQRQEASELR 1204
Query: 109 RNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ 168
R+L+E + + EA +T E ++ +K+++E +L +A E+ K+ LT+ + +
Sbjct: 1205 RSLSEGVQEREALRRTNEELRAAVKKAESERISLKLANEDKEQKLALLTEARVAVGKEAE 1264
Query: 169 QIPALLSELESLRQE 183
++ A L E+E R E
Sbjct: 1265 ELRAGLQEVERSRLE 1279
Score = 106 (42.4 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 52/200 (26%), Positives = 90/200 (45%)
Query: 43 DMMPPPEVMEQKIASQHVEMQKLATEN--QRLAATHGTLRQELAAAQHELQI-LHGQIGG 99
++M V ++ A + Q++A E QRL +EL A + +LQ L +
Sbjct: 969 ELMAQKLVQAEREAQASLREQRVAHEEDLQRLQQEKEAAWRELEAERAQLQSQLQREREE 1028
Query: 100 MKSERELQMRNLTEKIAKMEAE----LKTAEPVK---LEFQKSKTEA--QNLVVAREELI 150
+ + E + L+E+IA ++ E L AE K L ++S+ A + L+ + L
Sbjct: 1029 LLARLEAEKEELSEEIAALQQERDEGLLLAESEKQQALSLKESEKTALSEKLMGTQHSLA 1088
Query: 151 A---KVHQLTQDLQ-RAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQ 206
A ++ + +D Q R D + AL+SEL LR + T+ E K + +L
Sbjct: 1089 AISLEMERQKRDAQSRQEQDRSTVNALMSELRDLRAQLEEAADTHAQEVKRLQEQARNL- 1147
Query: 207 VMEKNYITMATEVEKLRAEL 226
E+ + E E+LR +L
Sbjct: 1148 --ERQRESSTREAEELRTQL 1165
Score = 73 (30.8 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 29/92 (31%), Positives = 39/92 (42%)
Query: 408 RVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFD--GAPR 465
R G + + V EAQR + G L+RG G + R+PS P T F AP
Sbjct: 1413 RGQGLEAELARV-EAQRRADEVQLGGLRSALRRGLG--LGRSPSPPPLPSTSFPTGSAPA 1469
Query: 466 GAAPHG-QVPPPLNNVPYGSATPPARSGSGQP 496
G + G + P PL P PP+ + P
Sbjct: 1470 GGSGEGLRSPSPLERSP--GCEPPSPGPTTSP 1499
>UNIPROTKB|F1Q2C0 [details] [associations]
symbol:CROCC "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051297 "centrosome organization"
evidence=IEA] [GO:0035253 "ciliary rootlet" evidence=IEA]
InterPro:IPR026733 GO:GO:0051297 GO:GO:0035253
GeneTree:ENSGT00700000104019 PANTHER:PTHR23159:SF5
EMBL:AAEX03001849 Ensembl:ENSCAFT00000025161 OMA:SDWRREE
Uniprot:F1Q2C0
Length = 2018
Score = 116 (45.9 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 38/135 (28%), Positives = 69/135 (51%)
Query: 51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG--GMKSERELQM 108
+E++ S E ++L T+ + L LR+EL AQ Q+ GQ G + E
Sbjct: 1147 LERQRESSTREAEELRTQLRLLEDARDGLRRELLEAQR--QVREGQDGREAQRQEASELR 1204
Query: 109 RNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ 168
R+L+E + + EA +T E ++ +K+++E +L +A E+ K+ LT+ + +
Sbjct: 1205 RSLSEGVQEREALRRTNEELRAAVKKAESERISLKLANEDKEQKLALLTEARVAVGKEAE 1264
Query: 169 QIPALLSELESLRQE 183
++ A L E+E R E
Sbjct: 1265 ELRAGLQEVERSRLE 1279
Score = 106 (42.4 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 52/200 (26%), Positives = 90/200 (45%)
Query: 43 DMMPPPEVMEQKIASQHVEMQKLATEN--QRLAATHGTLRQELAAAQHELQI-LHGQIGG 99
++M V ++ A + Q++A E QRL +EL A + +LQ L +
Sbjct: 969 ELMAQKLVQAEREAQASLREQRVAHEEDLQRLQQEKEAAWRELEAERAQLQSQLQREREE 1028
Query: 100 MKSERELQMRNLTEKIAKMEAE----LKTAEPVK---LEFQKSKTEA--QNLVVAREELI 150
+ + E + L+E+IA ++ E L AE K L ++S+ A + L+ + L
Sbjct: 1029 LLARLEAEKEELSEEIAALQQERDEGLLLAESEKQQALSLKESEKTALSEKLMGTQHSLA 1088
Query: 151 A---KVHQLTQDLQ-RAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQ 206
A ++ + +D Q R D + AL+SEL LR + T+ E K + +L
Sbjct: 1089 AISLEMERQKRDAQSRQEQDRSTVNALMSELRDLRAQLEEAADTHAQEVKRLQEQARNL- 1147
Query: 207 VMEKNYITMATEVEKLRAEL 226
E+ + E E+LR +L
Sbjct: 1148 --ERQRESSTREAEELRTQL 1165
Score = 73 (30.8 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 29/92 (31%), Positives = 39/92 (42%)
Query: 408 RVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFD--GAPR 465
R G + + V EAQR + G L+RG G + R+PS P T F AP
Sbjct: 1413 RGQGLEAELARV-EAQRRADEVQLGGLRSALRRGLG--LGRSPSPPPLPSTSFPTGSAPA 1469
Query: 466 GAAPHG-QVPPPLNNVPYGSATPPARSGSGQP 496
G + G + P PL P PP+ + P
Sbjct: 1470 GGSGEGLRSPSPLERSP--GCEPPSPGPTTSP 1499
>UNIPROTKB|Q767K9 [details] [associations]
symbol:PPP1R10 "Serine/threonine-protein phosphatase 1
regulatory subunit 10" species:9823 "Sus scrofa" [GO:0000785
"chromatin" evidence=ISS] [GO:0072357 "PTW/PP1 phosphatase complex"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0004864
"protein phosphatase inhibitor activity" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR000571
InterPro:IPR003617 InterPro:IPR017923 Pfam:PF00642 Pfam:PF08711
PROSITE:PS50103 PROSITE:PS51319 SMART:SM00356 SMART:SM00509
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0000785 GO:GO:0006351 GO:GO:0003723 EMBL:AB113357
GO:GO:0004864 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0072357
CTD:5514 eggNOG:NOG69306 HOGENOM:HOG000049285 HOVERGEN:HBG053646
OMA:PPPHEHR OrthoDB:EOG451DQK GeneTree:ENSGT00530000063820
RefSeq:NP_001116637.1 UniGene:Ssc.39454 ProteinModelPortal:Q767K9
Ensembl:ENSSSCT00000001463 Ensembl:ENSSSCT00000034462
GeneID:100144450 KEGG:ssc:100144450 ArrayExpress:Q767K9
Uniprot:Q767K9
Length = 925
Score = 134 (52.2 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 60/237 (25%), Positives = 80/237 (33%)
Query: 239 GSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAAT 298
G GG G P G + + DG G P GP G G GP
Sbjct: 659 GGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGP-----MRGGPGPGPGPYHRGRGGR 713
Query: 299 QSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDA 358
P P P + ++G G P+ GP G G+ P +GPG
Sbjct: 714 GGNEPP------PPPPPFRGARG-GRSGGGPPN--GRGGPGGGMVGGGGHRPHEGPGGGM 764
Query: 359 QKGSNYDAQRGPNYDIHRG--PSYDPQRGLG--YDMQRGPNYDMQRGPGYETQRVPGYDV 414
GS + GP + G P P G+G + GP M G G+ PG +
Sbjct: 765 SSGSGHRPHEGPGGGMGGGHRPHEGPGGGMGGGHRPHEGPGGGMGGGSGHRPHEGPGGGM 824
Query: 415 QRGPVYEAQRAPSYIPQRGPG-YDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPH 470
G + P + G +D+ +G+D R P P G DG G H
Sbjct: 825 GAGGGHRPHEGPGHGGPHGHRPHDVPGHRGHDHRGPP---PHEHRGHDGPGHGGGGH 878
>UNIPROTKB|F1S4P6 [details] [associations]
symbol:EIF3A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005852 "eukaryotic translation initiation factor 3
complex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0001732 "formation of translation initiation complex"
evidence=IEA] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
GO:GO:0005730 GO:GO:0003743 GO:GO:0005852 OMA:QDRDEND
GeneTree:ENSGT00690000102108 GO:GO:0001732 EMBL:CU407047
Ensembl:ENSSSCT00000011680 Uniprot:F1S4P6
Length = 1378
Score = 101 (40.6 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 64/224 (28%), Positives = 80/224 (35%)
Query: 247 NSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRA 306
+ E E+S RP G + GP G + ++ T P R
Sbjct: 943 DEERESSLRPDEDRGPRRG--MDDDRGPRRGLDEDRFSRRGADDDRPSWRNTDDDRPPRR 1000
Query: 307 AYDIPRGPGYEASKGPGYDASKAPSYDPTKGP--SYDPAKGP--GYDPTKGP---GYDAQ 359
D RG A D D +G + D +GP G D +GP G D +
Sbjct: 1001 IGDEDRGSWRHADD----DRPPRRGLDEDRGSWRTADEDRGPRRGMDEDRGPRRGGVDDE 1056
Query: 360 KGS--NYDAQRGPN-YDIHRGP--SYDPQRG--LGYDMQRGPN--YDMQRGPGYETQ--R 408
+ S N D R D RGP D RG G D RGP D RGP T R
Sbjct: 1057 RSSWRNADDDRPRRGMDDDRGPRRGMDDDRGPRRGMDDDRGPRRGLDDDRGPWRNTDDDR 1116
Query: 409 VP--GYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAP 450
+ G D RGP IP+RG + R +G D R P
Sbjct: 1117 ISRRGADDDRGPWRNMD--DDRIPRRGDDDRIPR-RGDDSRPGP 1157
Score = 85 (35.0 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 42/186 (22%), Positives = 80/186 (43%)
Query: 40 PPFDMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG 99
P MP ++ Q A V LA + + H + QE QH+L +
Sbjct: 509 PHLQSMPSEQIRNQLTAMSSV----LAKALEVIKPAH--ILQE-KEEQHQLAVTAYLKNS 561
Query: 100 MKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQD 159
K + + R T + K E + K E ++ + E Q + A EE + + + ++
Sbjct: 562 RKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAK-ERE 620
Query: 160 LQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEV 219
+R + +QI + +++R+ + T K F + +E L+ ++ ++I MA +V
Sbjct: 621 KERILQEHEQI-----KKKTVRERLEQIKKTELGAKAFKDIDIEDLEELDPDFI-MAKQV 674
Query: 220 EKLRAE 225
E+L E
Sbjct: 675 EQLEKE 680
Score = 72 (30.4 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 31/113 (27%), Positives = 48/113 (42%)
Query: 50 VMEQKIASQHVEMQKLATENQRLAAT-HGTLRQELAAAQHELQILHGQIGGMKSERELQM 108
VM K A Q V +KL +RLA H L + + E +I + + + E +
Sbjct: 761 VMRLKAARQSVYEEKLKQFEERLAEERHNRLEERKRQRKEERRITY-----YREKEEEEQ 815
Query: 109 RNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQ 161
R E++ K E + AE K E + E Q V EE+ K Q +++
Sbjct: 816 RRAEEQMLKEREERERAERAKRE--EELREYQERVKKLEEVERKKRQRELEIE 866
>WB|WBGene00000677 [details] [associations]
symbol:col-103 species:6239 "Caenorhabditis elegans"
[GO:0042302 "structural constituent of cuticle" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0040011
"locomotion" evidence=IMP] InterPro:IPR002486 Pfam:PF01484
SMART:SM01088 GO:GO:0040011 GeneTree:ENSGT00690000102663
GO:GO:0042302 HOGENOM:HOG000085656 EMBL:FO081484 PIR:E88633
RefSeq:NP_499982.1 ProteinModelPortal:O45114 STRING:O45114
EnsemblMetazoa:F56B3.1 GeneID:176901 KEGG:cel:CELE_F56B3.1
UCSC:F56B3.1 CTD:176901 WormBase:F56B3.1 eggNOG:NOG301529
InParanoid:O45114 OMA:SNTCPPG NextBio:894512 Uniprot:O45114
Length = 371
Score = 128 (50.1 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 87/287 (30%), Positives = 103/287 (35%)
Query: 229 APNVDRRA-----ADGSYGGATGNSE-NETSGRPVGQNA---YEDGYGVPQGHGPPPSAT 279
APN ++R G YGG G + G VG Y G+G GHG
Sbjct: 63 APNREKRGYAQYGGGGGYGGGHGGAAVGGGYGGAVGGGGGGGYGGGHG--GGHGGAVGGG 120
Query: 280 TAGVVGAGPNTSTSAYAAT----QSGTPMRAAYD-IPRGPGYEASKGPGYDASKAPSYDP 334
G G G S + T G P +A D +P PG S G S S
Sbjct: 121 YGGGGGGGGGCQCSPSSNTCPPGPRGPPGQAGLDGLPGAPGQPGSNGGA--GSNGASEGS 178
Query: 335 TKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGP 394
G PA PG P GP A + N D Q G PS+ G+G GP
Sbjct: 179 AGGCKTCPAGPPG--PP-GPAGQAGRPGN-DGQPG-------APSFGG--GVGAPGAPGP 225
Query: 395 NYDM-QRG-PGYETQRV-PGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPS 451
D G PG Q PG + Q G P+ P PG + G GY + P
Sbjct: 226 AGDAGSPGQPGAPGQPGRPGKNAQGGSSRPGPPGPAG-PPGPPGNNGAPGGGYGV--GPP 282
Query: 452 YDPSRGTGFDGAPRGAAPHGQVPPPLNN-VPYGSAT--P-PARSGSG 494
P +G GAP P GQ P N+ P A P P R G G
Sbjct: 283 GPPGP-SGRPGAPGQPGPDGQPGAPGNDGTPGTDAAYCPCPGRGGGG 328
>CGD|CAL0000919 [details] [associations]
symbol:RPO21 species:5476 "Candida albicans" [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0009267 "cellular response to starvation"
evidence=IMP] [GO:0036170 "filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0003968 "RNA-directed RNA
polymerase activity" evidence=IEA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 CGD:CAL0000919
GO:GO:0071216 GO:GO:0036180 GO:GO:0003677 GO:GO:0006366
GO:GO:0009267 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AACQ01000032 GO:GO:0036170 GO:GO:0003899 eggNOG:COG0086
GO:GO:0005665 KO:K03006 RefSeq:XP_719414.1 STRING:Q5ACI7
GeneID:3638991 KEGG:cal:CaO19.7655 Uniprot:Q5ACI7
Length = 1728
Score = 136 (52.9 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 68/221 (30%), Positives = 85/221 (38%)
Query: 237 ADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVG-AGPNTSTSAY 295
ADG GGAT + E NA ++ + G G P G G TS
Sbjct: 1465 ADG--GGATPYKDYE--------NARDENIDIDAGAGFSPIHIAQMNEGNIGGLTSYGGQ 1514
Query: 296 AATQSGT-PMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGP 354
+ + T P Y+ PGY S G GY + +PSY PT PSY P P Y PT P
Sbjct: 1515 PTSPAATSPFSYGYNSITSPGY-TSPGYGYSPT-SPSYSPTS-PSYAPTS-PAYSPTS-P 1569
Query: 355 GYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDV 414
Y A Y + P+Y P+Y P Y P+Y P Y P Y
Sbjct: 1570 SY-APTSPAY-SPTSPSY-APTSPAYSPTSP-AYS-PTSPSYS-PTSPQYSPTS-PSYS- 1621
Query: 415 QRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPS 455
P Y + +PSY P P Y +PSY P+
Sbjct: 1622 PTSPSY-SPTSPSYSPT-SPAYS---------PTSPSYSPT 1651
>UNIPROTKB|Q5ACI7 [details] [associations]
symbol:RPO21 "DNA-directed RNA polymerase" species:237561
"Candida albicans SC5314" [GO:0009267 "cellular response to
starvation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0036170 "filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP]
InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
SMART:SM00663 CGD:CAL0000919 GO:GO:0071216 GO:GO:0036180
GO:GO:0003677 GO:GO:0006366 GO:GO:0009267 Gene3D:2.40.40.20
InterPro:IPR009010 EMBL:AACQ01000032 GO:GO:0036170 GO:GO:0003899
eggNOG:COG0086 GO:GO:0005665 KO:K03006 RefSeq:XP_719414.1
STRING:Q5ACI7 GeneID:3638991 KEGG:cal:CaO19.7655 Uniprot:Q5ACI7
Length = 1728
Score = 136 (52.9 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 68/221 (30%), Positives = 85/221 (38%)
Query: 237 ADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVG-AGPNTSTSAY 295
ADG GGAT + E NA ++ + G G P G G TS
Sbjct: 1465 ADG--GGATPYKDYE--------NARDENIDIDAGAGFSPIHIAQMNEGNIGGLTSYGGQ 1514
Query: 296 AATQSGT-PMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGP 354
+ + T P Y+ PGY S G GY + +PSY PT PSY P P Y PT P
Sbjct: 1515 PTSPAATSPFSYGYNSITSPGY-TSPGYGYSPT-SPSYSPTS-PSYAPTS-PAYSPTS-P 1569
Query: 355 GYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDV 414
Y A Y + P+Y P+Y P Y P+Y P Y P Y
Sbjct: 1570 SY-APTSPAY-SPTSPSY-APTSPAYSPTSP-AYS-PTSPSYS-PTSPQYSPTS-PSYS- 1621
Query: 415 QRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPS 455
P Y + +PSY P P Y +PSY P+
Sbjct: 1622 PTSPSY-SPTSPSYSPT-SPAYS---------PTSPSYSPT 1651
>TAIR|locus:4010713902 [details] [associations]
symbol:AT4G22505 species:3702 "Arabidopsis thaliana"
[GO:0006869 "lipid transport" evidence=IEA] EMBL:CP002687
GO:GO:0006869 InterPro:IPR016140 SUPFAM:SSF47699 UniGene:At.22887
UniGene:At.74604 IPI:IPI00938995 RefSeq:NP_001154263.1 PRIDE:F4JLV7
EnsemblPlants:AT4G22505.1 GeneID:5008157 KEGG:ath:AT4G22505
OMA:GSEMAGM Uniprot:F4JLV7
Length = 530
Score = 130 (50.8 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 54/229 (23%), Positives = 67/229 (29%)
Query: 269 PQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASK 328
P+ PPP T A P T + P P+ P K P +
Sbjct: 74 PRTPPPPPPRTPRTPPTAPPRTPPVSPRIPPILPPKTPPTAPPQTPPVSPPKSPPNSPPR 133
Query: 329 APSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGY 388
AP P + P P + P P + P + R P+ R P P R
Sbjct: 134 APPLSPPRTPPTSPPRVPPLSPPRTPPTSPPRAPPIPPPRTPSTSPPRAPPLSPPRTPPT 193
Query: 389 DMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRR 448
R P P R P R P R P P R P R R
Sbjct: 194 SPPRAPPVPPPNTPPTSPPRAPPLSPPRTPPNSPPRTPPTSPPRAPPVPPPRISPTAPPR 253
Query: 449 APSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPR 497
AP P R T PR + PP + +PP + PR
Sbjct: 254 APPLSPPR-TPPTSPPRTPPLSPPITPPTSPPRAPPLSPPRTPPTSPPR 301
Score = 121 (47.7 bits), Expect = 0.00039, P = 0.00039
Identities = 58/231 (25%), Positives = 69/231 (29%)
Query: 269 PQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASK 328
P+ PPP T P T + A P+ PR P K P +
Sbjct: 63 PRTPPPPPPRTPRTPPPPPPRTPRTPPTAPPRTPPVS-----PRIPPILPPKTPPTAPPQ 117
Query: 329 APSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGY 388
P P K P P + P P + P + R P R P P R
Sbjct: 118 TPPVSPPKSPPNSPPRAPPLSPPRTPPTSPPRVPPLSPPRTPPTSPPRAPPIPPPRTPST 177
Query: 389 DMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRR 448
R P R P R P P RAP P R P R R
Sbjct: 178 SPPRAPPLSPPRTPPTSPPRAPPVPPPNTPPTSPPRAPPLSPPRTPPNSPPRTPPTSPPR 237
Query: 449 APSYDPSRGTGFDGAPRGAAPHGQVP--PPLNNVPYGSATPPARSGSGQPR 497
AP P R + PR AP P PP + +PP + PR
Sbjct: 238 APPVPPPRISP-TAPPR--APPLSPPRTPPTSPPRTPPLSPPITPPTSPPR 285
>MGI|MGI:88453 [details] [associations]
symbol:Col3a1 "collagen, type III, alpha 1" species:10090 "Mus
musculus" [GO:0001568 "blood vessel development" evidence=IMP]
[GO:0005178 "integrin binding" evidence=ISO] [GO:0005201
"extracellular matrix structural constituent" evidence=ISO]
[GO:0005576 "extracellular region" evidence=IEA] [GO:0005578
"proteinaceous extracellular matrix" evidence=IEA] [GO:0005581
"collagen" evidence=IDA] [GO:0005586 "collagen type III"
evidence=ISO;IDA] [GO:0005615 "extracellular space" evidence=ISO]
[GO:0007160 "cell-matrix adhesion" evidence=ISO] [GO:0007179
"transforming growth factor beta receptor signaling pathway"
evidence=ISO] [GO:0007229 "integrin-mediated signaling pathway"
evidence=ISO] [GO:0007507 "heart development" evidence=ISO]
[GO:0009314 "response to radiation" evidence=ISO] [GO:0018149
"peptide cross-linking" evidence=ISO] [GO:0030199 "collagen fibril
organization" evidence=ISO;IMP] [GO:0031012 "extracellular matrix"
evidence=ISO;IDA] [GO:0032964 "collagen biosynthetic process"
evidence=ISO] [GO:0034097 "response to cytokine stimulus"
evidence=ISO] [GO:0042060 "wound healing" evidence=ISO] [GO:0043206
"extracellular fibril organization" evidence=ISO] [GO:0043588 "skin
development" evidence=ISO] [GO:0046332 "SMAD binding" evidence=IPI]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0048407
"platelet-derived growth factor binding" evidence=ISO] [GO:0048565
"digestive tract development" evidence=IMP] [GO:0050777 "negative
regulation of immune response" evidence=ISO] [GO:0071230 "cellular
response to amino acid stimulus" evidence=IDA] InterPro:IPR000885
InterPro:IPR001007 Pfam:PF00093 Pfam:PF01410 ProDom:PD002078
PROSITE:PS01208 PROSITE:PS50184 PROSITE:PS51461 SMART:SM00038
SMART:SM00214 MGI:MGI:88453 GO:GO:0043588 GO:GO:0005615
GO:GO:0007507 GO:GO:0046872 GO:GO:0034097 GO:GO:0030199
GO:GO:0001501 GO:GO:0007179 GO:GO:0007229 GO:GO:0007160
InterPro:IPR008160 Pfam:PF01391 eggNOG:NOG12793 GO:GO:0042060
GO:GO:0001568 GO:GO:0048565 GO:GO:0050777 GO:GO:0009314
GO:GO:0018149 GO:GO:0032964 GO:GO:0071230 GO:GO:0043206
GO:GO:0005201 HOVERGEN:HBG004933 KO:K06236 OrthoDB:EOG4FTW1C
CTD:1281 OMA:EGSPGHP ChiTaRS:COL3A1 GO:GO:0005586 EMBL:X52046
EMBL:BC043089 EMBL:BC058724 EMBL:M18933 EMBL:K03037 EMBL:AK019448
EMBL:X57983 IPI:IPI00129571 PIR:A27353 PIR:S59856
RefSeq:NP_034060.2 UniGene:Mm.249555 ProteinModelPortal:P08121
SMR:P08121 STRING:P08121 PhosphoSite:P08121 PaxDb:P08121
PRIDE:P08121 Ensembl:ENSMUST00000087883 GeneID:12825 KEGG:mmu:12825
InParanoid:P08121 NextBio:282310 Bgee:P08121 CleanEx:MM_COL3A1
Genevestigator:P08121 Uniprot:P08121
Length = 1464
Score = 135 (52.6 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 85/278 (30%), Positives = 99/278 (35%)
Query: 238 DGSYGGATGNSENETSGR--PVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAY 295
DGS G N +G P G G+P GPP G G
Sbjct: 466 DGSPGEPGANGLPGAAGERGPSGFRGPAGPNGIPGEKGPPGERGGPGPAGPRGVAGEPGR 525
Query: 296 AATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDP-TKGPSYDPAKGPGYDPTKGP 354
T G +R P GPG + GP S+ S P GPS P PG GP
Sbjct: 526 DGTPGGPGIRGMPGSPGGPGNDGKPGP--PGSQGESGRPGPPGPS-GPRGQPGVMGFPGP 582
Query: 355 -GYDAQKGSNYDAQRGPNYDIHRGPS-YDPQRG-LGYDMQRGPNYDM-QRGP-GYE-TQR 408
G D G N + + GP GP+ + + G G GP D GP G + Q
Sbjct: 583 KGNDGAPGKNGE-RGGPGGPGLPGPAGKNGETGPQGPPGPTGPAGDKGDSGPPGPQGLQG 641
Query: 409 VPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGT-GFDGAPRGA 467
+PG GP E + P+ G G G AP GT G GA GA
Sbjct: 642 IPGTG---GPPGENGKPGEPGPKGEVGAPGAPG-GKGDSGAPGERGPPGTAGIPGARGGA 697
Query: 468 APHGQVPPPLNNVPYGSATPPARSGS----GQP--RGG 499
P G P P G PP SGS G P RGG
Sbjct: 698 GPPG---PEGGKGPAGPPGPPGASGSPGLQGMPGERGG 732
Score = 124 (48.7 bits), Expect = 0.00066, P = 0.00066
Identities = 82/290 (28%), Positives = 106/290 (36%)
Query: 233 DRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGA-GP--- 288
D ++ G GG G + P G + + G P GPP AG G GP
Sbjct: 160 DVKSGVGGMGGYPGPAGPPGPPGPPGSSGHPGSPGSPGYQGPPGEPGQAGPAGPPGPPGA 219
Query: 289 -NTSTSAYAATQSGTPMRAAY-DIPRGPGYEASKG-PGYDASKAP-SYDPTKGPSYDPAK 344
+ A +SG P R +P PG + G PG+ K +D G +
Sbjct: 220 LGPAGPAGKDGESGRPGRPGERGLPGPPGIKGPAGMPGFPGMKGHRGFDGRNGEKGETG- 278
Query: 345 GPGYDPTKG-PGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGL-GYDMQRGPNYDMQRGP 402
PG G PG + G RG + R P G G D RG D Q GP
Sbjct: 279 APGLKGENGLPGDNGAPGPM--GPRGAPGERGR-PGLPGAAGARGNDGARGS--DGQPGP 333
Query: 403 -GYE-TQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGF 460
G T PG +G V A S PG QRG+ A + P G
Sbjct: 334 PGPPGTAGFPGSPGAKGEVGPAGSPGS---NGSPG---QRGEPGPQGHAGAQGPPGPPGN 387
Query: 461 DGAPRGAAPHGQVPPPLNNVP--YGSATPPARSGS-GQP--RG--GNPAR 503
+G+P G G P + P G+ PP +G+ G P RG G P +
Sbjct: 388 NGSPGGKGEMG--PAGIPGAPGLIGARGPPGPAGTNGIPGTRGPSGEPGK 435
>UNIPROTKB|F1PG69 [details] [associations]
symbol:COL3A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005581 "collagen" evidence=IEA] [GO:0005201
"extracellular matrix structural constituent" evidence=IEA]
InterPro:IPR000885 InterPro:IPR001007 Pfam:PF00093 Pfam:PF01410
ProDom:PD002078 PROSITE:PS01208 PROSITE:PS50184 PROSITE:PS51461
SMART:SM00038 SMART:SM00214 GO:GO:0005581 InterPro:IPR008160
Pfam:PF01391 GO:GO:0005201 GeneTree:ENSGT00660000095287 OMA:EGSPGHP
EMBL:AAEX03017880 Ensembl:ENSCAFT00000023503 Uniprot:F1PG69
Length = 1467
Score = 135 (52.6 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 85/274 (31%), Positives = 106/274 (38%)
Query: 253 SGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVG-AGPNTSTSAYAATQSGTPMRAAYDIP 311
+G+P G+ +++ G P GPP +A G G AGP SG +R I
Sbjct: 653 NGKP-GEPSHQGDSGAPGERGPPGAAGPMGPRGGAGP---PGPEGGKVSGGDLRPP--IS 706
Query: 312 RGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKG-PGYDAQKGS-NYDAQRG 369
G G GP A P G P GPG KG PG G+ D RG
Sbjct: 707 AGAGAAGPPGPPGSAG-TPGLQGMPGERGGPG-GPGPKGDKGEPGSAGADGAPGKDGPRG 764
Query: 370 PNYDIHR-GPSYDP-QRGLG--------YDMQRGPNYDMQRGPGYETQRVPGYDVQRG-P 418
P I GP+ P +G G + GP + GP PG Q G P
Sbjct: 765 PTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGGPGERGEHGPPGPAG-FPGAPGQNGEP 823
Query: 419 VYEAQR-APSYIPQRGP-GYDLQRGQGYDMRRAPSYDPSRGT-GFDGAPRGAA--PHGQ- 472
+ +R AP + GP G G G P +G G G P GAA P G+
Sbjct: 824 GAKGERGAPGEKGEGGPPGVAGPPG-GAGPAGPPGPQGVKGERGSPGGP-GAAGFPGGRG 881
Query: 473 VP-PPLNNV---PYGSATPPARSGSGQPRGGNPA 502
+P PP NN P GS+ P + G P G N A
Sbjct: 882 LPGPPGNNGNPGPPGSSGAPGKDGPPGPPGNNGA 915
Score = 133 (51.9 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 84/286 (29%), Positives = 103/286 (36%)
Query: 231 NVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGA-GP- 288
+V A G GG G + P G + + G P GPP AG G GP
Sbjct: 159 DVKAGVAGGGIGGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPAGPPGPP 218
Query: 289 ---NTSTSAYAATQSGTPMRAAY-DIPRGPGYEASKG-PGYDASKAP-SYDPTKGPSYDP 342
S A +SG P R +P PG + G PG+ K +D G D
Sbjct: 219 GAMGPSGPAGKDGESGRPGRPGERGLPGPPGMKGPAGMPGFPGMKGHRGFDGRNGEKGDT 278
Query: 343 AKGPGYDPTKG-PGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGL-GYDMQRGPNYDMQR 400
PG G PG + G RG + R P G G D RG D Q
Sbjct: 279 G-APGLKGENGLPGENGAPGPM--GPRGAPGERGR-PGLPGAAGARGNDGARGS--DGQP 332
Query: 401 GP-GYE-TQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGT 458
GP G T PG +G V A S PG QRG+ A + P
Sbjct: 333 GPPGPPGTAGFPGSPGAKGEVGPAGSPGS---NGSPG---QRGEPGPQGHAGAPGPPGPP 386
Query: 459 GFDGAPRGAAPHGQVPPPLNNVP--YGSATPPARSGS-GQP--RGG 499
G +G+P G G P + P G+ PP G+ G P RGG
Sbjct: 387 GSNGSPGGKGEMG--PAGIPGAPGLIGARGPPGPPGTNGAPGQRGG 430
Score = 123 (48.4 bits), Expect = 0.00085, P = 0.00085
Identities = 78/261 (29%), Positives = 98/261 (37%)
Query: 258 GQNAYEDGYGVPQGHGPPPSATTAGVVGA----GPNTSTSAYAAT-QSGTPMRAAY-DIP 311
G + G P GPP +A G GA GP S + + Q G P + P
Sbjct: 321 GNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGSPGQRGEPGPQGHAGAP 380
Query: 312 RGPGYEASKG-PGYDASKAPSYDPTKGPSYDPAKGPGYDP-TKG-PGYDAQKGS-NYDAQ 367
PG S G PG P+ P P A+GP P T G PG G +
Sbjct: 381 GPPGPPGSNGSPGGKGEMGPAGIPG-APGLIGARGPPGPPGTNGAPGQRGGAGEPGKNGA 439
Query: 368 RG-PNYDIHRGPSYDPQ-RG-LGYDMQRG-PNYDMQRG-PGYETQR-VPGYDVQRGPV-- 419
+G P RG + P G G D + G P G PG +R PG+ RGP
Sbjct: 440 KGEPGPRGERGEAGSPGIPGPKGEDGKDGSPGEPGANGLPGAAGERGAPGF---RGPAGA 496
Query: 420 --YEAQRAPSYIPQRGPGYDLQRGQ-GYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPP 476
++ P+ + GPG RG G R P G G+P G G+ PP
Sbjct: 497 NGLPGEKGPAG-ERGGPGPAGPRGAPGEPGRDGVPGGPGM-RGMPGSPGGPGSDGKPGPP 554
Query: 477 LNNVPYGSATPPARSGS-GQP 496
+ G PP SG GQP
Sbjct: 555 GSQGESGRPGPPGPSGPRGQP 575
>UNIPROTKB|G5EF87 [details] [associations]
symbol:swsn-1 "SWI3-like protein" species:6239
"Caenorhabditis elegans" [GO:0042802 "identical protein binding"
evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001005 InterPro:IPR007526 InterPro:IPR009057
Pfam:PF00249 Pfam:PF04433 PROSITE:PS50934 SMART:SM00717
GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0003677 GO:GO:0040018
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0046662 GO:GO:0040035
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0040027 GO:GO:0035262
EMBL:AL110477 KO:K11649 GeneTree:ENSGT00390000018166 EMBL:AF230279
PIR:T26449 RefSeq:NP_001256906.1 UniGene:Cel.7072 SMR:G5EF87
IntAct:G5EF87 EnsemblMetazoa:Y113G7B.23 GeneID:180324
KEGG:cel:CELE_Y113G7B.23 CTD:180324 WormBase:Y113G7B.23a
OMA:HFDELEQ NextBio:908892 Uniprot:G5EF87
Length = 789
Score = 131 (51.2 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 71/248 (28%), Positives = 92/248 (37%)
Query: 267 GVPQGH---GPP---PSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASK 320
G+P G GPP P + A P ++ AAT + P + P+ P +A+
Sbjct: 551 GLPPGFEVTGPPQPTPQVQISAQEAAIPEKMDTSEAATAARPP--STPQAPQAPPVQAAP 608
Query: 321 GPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDI-HRGPS 379
P A +AP P +Y GPG P + Y Q+G Y P H+
Sbjct: 609 AP-VQAPQAPQAPPQ---AYQGYGGPGGPPQQAYRYPPQQGQQYSPYPPPQQQQQHQAQQ 664
Query: 380 YDPQRGLGYDMQ-RGPNYDMQRGPGYETQRVPG--YDVQRGPVYEAQRAPSYIPQRGPGY 436
Q G +GP Q Y PG Y G + QR P Y Q PG
Sbjct: 665 AQSQAHYGPPGGGQGPPPPPQGQQYYGGPPPPGQPYGPPGGYPPQQQRPP-YQAQPYPGP 723
Query: 437 ---DLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGS 493
QRG GY P P G P P+GQ+PPP P+G P + G
Sbjct: 724 PPPQQQRGYGYP----PPPQP-------GHPY-QQPYGQMPPP----PHGQYQPQQQQGG 767
Query: 494 GQ-PRGGN 500
P GG+
Sbjct: 768 PMGPPGGH 775
Score = 120 (47.3 bits), Expect = 0.00086, P = 0.00086
Identities = 105/465 (22%), Positives = 166/465 (35%)
Query: 36 PGAF-P-PFDMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQE---LAAAQHEL 90
P AF P PF P + + V+ Q A + G L++E L A HE
Sbjct: 328 PLAFQPVPFSQSGNPVMSTVAFLASVVDPQVAAAATKAAMEEFGKLKEEIPPLVAEAHEK 387
Query: 91 QILH-----GQIGGMKSERELQMRNLTEKIAKMEAEL--KTAEPVKLEFQKSKTEAQNLV 143
+ GQ+ G + ++ E + ++ T + V + + +
Sbjct: 388 NVAAMAEKTGQVDGAVGLTKSGLKPAEEAAGDSDEKMDTNTNDDVPSTTEAKSAIDKGVQ 447
Query: 144 VAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLE 203
A +A + L A + ++I +L+++L + + E + + + D LE
Sbjct: 448 AAAASCLAAAAVKAKHL--AQIEERRIKSLVAQLVETQMK------KLEMKLRHF-DELE 498
Query: 204 SLQVMEKNYITMATEVEKLRAELMNAPNVDRRAADGSYGGATGNSENETSGR-PVGQNAY 262
Q+M+K ++ + +L E A ++D+ + +S +SG P G
Sbjct: 499 --QIMDKERESLEYQRHQLILE-RQAFHMDQLKYLENRAKHEAHSRMTSSGALPAGLPPG 555
Query: 263 EDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRA-AYDIPRGPG-YEASK 320
+ G PQ + + +TS +A AA TP A + P +A +
Sbjct: 556 FEVTGPPQPTPQVQISAQEAAIPEKMDTSEAATAARPPSTPQAPQAPPVQAAPAPVQAPQ 615
Query: 321 GP-----GYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIH 375
P Y P P + Y P +G Y P P Q + AQ +Y
Sbjct: 616 APQAPPQAYQGYGGPGGPPQQAYRYPPQQGQQYSPYPPPQQQQQHQAQ-QAQSQAHYGPP 674
Query: 376 RGPSYDPQRGLGYDMQRGPNYDMQR-GP--GYETQRV-PGYDVQR--GPVY-EAQRAPSY 428
G P G GP Q GP GY Q+ P Y Q GP + QR Y
Sbjct: 675 GGGQGPPPPPQGQQYYGGPPPPGQPYGPPGGYPPQQQRPPYQAQPYPGPPPPQQQRGYGY 734
Query: 429 IPQRGPGYDLQRGQGYDMRRAP--SYDPSRGTGFDGAPRGAAPHG 471
P PG+ Q+ G M P Y P + G P G G
Sbjct: 735 PPPPQPGHPYQQPYG-QMPPPPHGQYQPQQQQGGPMGPPGGHHEG 778
>MGI|MGI:1925567 [details] [associations]
symbol:Ccdc88b "coiled-coil domain containing 88B"
species:10090 "Mus musculus" [GO:0000226 "microtubule cytoskeleton
organization" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0008017 "microtubule
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR008636 Pfam:PF05622 MGI:MGI:1925567
GO:GO:0005737 GO:GO:0000226 CTD:283234 eggNOG:NOG287357
HOVERGEN:HBG104809 OMA:EGLEVQE OrthoDB:EOG4NS39S EMBL:AC120557
EMBL:BC076600 EMBL:BC151001 EMBL:BC151009 IPI:IPI00608004
IPI:IPI00874526 RefSeq:NP_001074760.1 UniGene:Mm.329596 HSSP:Q09013
ProteinModelPortal:Q4QRL3 SMR:Q4QRL3 PhosphoSite:Q4QRL3
PaxDb:Q4QRL3 PRIDE:Q4QRL3 Ensembl:ENSMUST00000113440 GeneID:78317
KEGG:mmu:78317 UCSC:uc008gjb.1 GeneTree:ENSGT00690000101702
HOGENOM:HOG000060297 InParanoid:B2RX63 NextBio:348677 Bgee:Q4QRL3
CleanEx:MM_CCDC88B Genevestigator:Q4QRL3 Uniprot:Q4QRL3
Length = 1481
Score = 134 (52.2 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 51/189 (26%), Positives = 92/189 (48%)
Query: 51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRN 110
+E ++ S Q+L ++QR L+ E + + + Q LH ++G ++ E R
Sbjct: 1009 LEGQLGSLQGRAQELLLQSQRAQEHSSRLQAEKSMMEMQGQELHRKLGVLEEEVRAARRA 1068
Query: 111 LTEKIAKMEAELKTAEP-VKLEFQKSKTEAQNLVVAREELIAKVHQLT---QDLQ----- 161
E + +A L+ E V+L+ ++ +TE + L+V +L A + L ++LQ
Sbjct: 1069 QEETRGQQQALLRDHEALVQLQ-RRQETELEGLLVRHRDLKANMRALELAHRELQGRHEQ 1127
Query: 162 ----RAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMAT 217
RA+ + Q++ ALL+E E L Q+ H RG E ++ N+H E Q++
Sbjct: 1128 LQAQRANVEAQEV-ALLAERERLMQDGHRQRGLEEELRRLQNEH-ERAQMLLAEVSRERG 1185
Query: 218 EVEKLRAEL 226
E++ R EL
Sbjct: 1186 ELQGERGEL 1194
>ZFIN|ZDB-GENE-050302-9 [details] [associations]
symbol:col2a1b "collagen type II, alpha-1b"
species:7955 "Danio rerio" [GO:0003674 "molecular_function"
evidence=ND] [GO:0033333 "fin development" evidence=IMP]
[GO:0033334 "fin morphogenesis" evidence=IMP] [GO:0005581
"collagen" evidence=IEA] EMBL:HF563615 EMBL:HF563616 EMBL:HF563617
Uniprot:L0S5L0
Length = 1493
Score = 134 (52.2 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 91/310 (29%), Positives = 115/310 (37%)
Query: 226 LMNAPNVD-RRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVV 284
L P D A G G A E G+P G + ++ G+P GPP G
Sbjct: 634 LRGLPGKDGETGAAGPPGPAGSAGERGEQGQP-GPSGFQ---GLPGPPGPPGEGGKPGDQ 689
Query: 285 GAGPNTSTSAYAAT---QSGTPMRAAYDIPRG-PGYEASKG-PGYDASKAPSYDP--TKG 337
G P + A A + G P P+G G G PG D K P T G
Sbjct: 690 GV-PGEAGGAGATGPRGERGFPGERGGAGPQGLQGPRGLPGTPGTDGPKG-GVGPAGTAG 747
Query: 338 PSYDPA-KG-PGYDPTKG-PGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGL----GYDM 390
P +G PG T G PG +G N D +GP P D RGL G
Sbjct: 748 AQGPPGLQGMPGERGTSGNPGPKGDRGDNGD--KGPE----GAPGKDGSRGLTGPIGPTG 801
Query: 391 QRGPNYDM-QRGP----GYE-TQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGY 444
GPN + + GP G T+ VPG + GP A A PG ++G+G
Sbjct: 802 PAGPNGEKGESGPAGPSGVAGTRGVPGDRGETGPPGPAGFAGPPGADGQPGVKGEQGEGG 861
Query: 445 DMRRAPSYDPSRGTGFDG--APRGAA-PHG----QVPPPLNNVP--YGSATPPARSGSGQ 495
A + P +G G P G + P G Q PP P G PP +G+
Sbjct: 862 QKGDAGAPGPQGPSGAPGPQGPTGVSGPKGARGAQGPPGATGFPGAAGRVGPPGPNGNPG 921
Query: 496 PRG--GNPAR 503
P G G P +
Sbjct: 922 PAGPAGPPGK 931
Score = 133 (51.9 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 81/284 (28%), Positives = 97/284 (34%)
Query: 230 PNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGA-GP 288
P R GA GN P G G P G P + AG GA GP
Sbjct: 335 PGERGRPGPSGASGARGNDGLPGGAGPPGPVGTAGSPGFP---GSPGAKGEAGPTGARGP 391
Query: 289 NTSTSAYAATQSGTPMRAAYDIPRG-PGYEASKG-PGYDASK-APSYDPTKG-PSYDPAK 344
+ +SG P + P G G S G PG S AP G P P
Sbjct: 392 EGAQGPRG--ESGVPGASG---PSGVSGNPGSDGMPGAKGSVGAPGIGGAPGFPG--PRG 444
Query: 345 GPGYDPTKGP-GYDAQKGSN----YDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQ 399
PG GP G Q G + + + GP +I G + +RGP +
Sbjct: 445 PPGPQGATGPLGPKGQSGDSGLAGFKGEAGPKGEIGNAGLQGAPGPAGEEGKRGPRGEPG 504
Query: 400 RG--PGYETQR-VPGYDVQRG-PVYEAQRAPSYIP-QRGP-GYDLQRGQGYDMRRAPSYD 453
PG +R PG RG P + P P +RGP G +G G D R
Sbjct: 505 AAGPPGPTGERGTPG---NRGFPGQDGLAGPKGAPGERGPAGVSGPKGAGGDPGRPGEPG 561
Query: 454 PSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSG-SGQP 496
G G P A P G+V P G PP G GQP
Sbjct: 562 LPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGVRGQP 605
Score = 124 (48.7 bits), Expect = 0.00067, P = 0.00067
Identities = 78/259 (30%), Positives = 90/259 (34%)
Query: 258 GQNAYEDGYGVPQGHGPPPSATTAGVVG-AGPNTSTSAYAAT-QSGTPMRAAYDIPRGPG 315
G+ + G P GP + G G +GP + A +G P A P GP
Sbjct: 858 GEGGQKGDAGAPGPQGPSGAPGPQGPTGVSGPKGARGAQGPPGATGFPGAAGRVGPPGPN 917
Query: 316 YEASKGPGYDASKAPSYDPTKGPSYD--PAKGPGYDPTKGP-GYDAQKGS-NYDAQRGPN 371
+ GP A P D KG D P PG +G G +KG D GP
Sbjct: 918 --GNPGPAGPAGP-PGKDGPKGVRGDGGPPGRPGDAGLRGSAGPAGEKGDPGEDGPHGP- 973
Query: 372 YDIHRGPS-YDPQRGL-GYDMQRGPN-YDMQRGPGYET--QRVPGYDVQRGPVYEAQRAP 426
D GP QRG+ G QRG + GP E Q PG RGP AP
Sbjct: 974 -DGPAGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGPGDRGPPGPVG-AP 1031
Query: 427 SYIPQRG-PGYDLQRGQGYDMRRAPS--YDPSRG----TGFDGAPRGAAPHGQVPPPLNN 479
G PG + G R S RG G GAP G G V P
Sbjct: 1032 GLTGAAGEPGREGNPGSDGPPGRDGSAGIKGDRGDTGPAGAPGAPGGPGAPGPVGPTGKQ 1091
Query: 480 VPYGSATPPARSGSGQPRG 498
G A P SG P G
Sbjct: 1092 GDRGEAGPHGPSGPPGPAG 1110
>UNIPROTKB|F1NRH2 [details] [associations]
symbol:LOC100858979 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005581 "collagen" evidence=IEA] [GO:0005938
"cell cortex" evidence=IEA] InterPro:IPR008983 GO:GO:0005938
GO:GO:0005581 Gene3D:2.60.120.40 InterPro:IPR001073
InterPro:IPR008160 Pfam:PF00386 Pfam:PF01391 PRINTS:PR00007
SMART:SM00110 SUPFAM:SSF49842 PROSITE:PS50871
GeneTree:ENSGT00700000104270 OMA:IKGPPPN EMBL:AC147437
IPI:IPI01017314 RefSeq:XP_003641055.1 Ensembl:ENSGALT00000024133
GeneID:100858979 KEGG:gga:100858979 Uniprot:F1NRH2
Length = 674
Score = 130 (50.8 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 87/281 (30%), Positives = 106/281 (37%)
Query: 238 DGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGA-GPNTSTSAYA 296
D GA G + P G+ E G G P GPP A G G GP
Sbjct: 229 DRGLPGARGEAGIPGPQGPPGEPG-EVGIGKPGPMGPPGPAGIPGAKGLPGP-------- 279
Query: 297 ATQSGTPMRAAYDIPRGPGYEASKGP-GYDASKAPSYDPTKGPSYDPAK-GP-GYDPTKG 353
A G+P + P PG + +GP G P D +GP+ P + GP G G
Sbjct: 280 AGLPGSPGLPGFGKPGLPGMKGHRGPEGPPGFPGPKGD--QGPAGVPGEPGPAGPQGNMG 337
Query: 354 P-GYDAQKGSNYDAQRGPNYDIHR-GPSYDP----QRGL-GYDMQRGPNYDMQRG-PGYE 405
P G G N GP D+ GP+ P +RGL G D + P Y ++G PG +
Sbjct: 338 PQGLKGLPGEN--GLPGPKGDMGPVGPAGFPGAKGERGLPGLDGK--PGYPGEQGLPGPK 393
Query: 406 TQRVPGYDVQRGPVYEAQRAPSYIPQR-GP-GYDLQRG-QGYDMRRAPSYDPS-RGT-GF 460
PG Q+G A P +P GP G G G R PS P RG G
Sbjct: 394 GH--PGLPGQKGDTGHA--GPPGLPGPVGPQGVKGVPGINGEPGPRGPSGIPGIRGPIGP 449
Query: 461 DGAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRGGNP 501
G P G+ P P G AT R G P P
Sbjct: 450 PGMPGAPGAKGEAGAPGLPGPAGIATKGLRGPMGPPGPPGP 490
>UNIPROTKB|H7BZW9 [details] [associations]
symbol:SLMAP "Sarcolemmal membrane-associated protein"
species:9606 "Homo sapiens" [GO:0006457 "protein folding"
evidence=IEA] [GO:0016272 "prefoldin complex" evidence=IEA]
[GO:0051082 "unfolded protein binding" evidence=IEA]
InterPro:IPR002777 Pfam:PF01920 GO:GO:0006457 GO:GO:0016272
EMBL:AC114480 HGNC:HGNC:16643 ChiTaRS:SLMAP EMBL:AC099777
ProteinModelPortal:H7BZW9 PRIDE:H7BZW9 Ensembl:ENST00000438794
Uniprot:H7BZW9
Length = 316
Score = 125 (49.1 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 51/196 (26%), Positives = 91/196 (46%)
Query: 49 EVMEQKIASQHVEMQKLATE-NQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQ 107
+V++ ++ H++ + L E + + +T R EL +A+ E+ +LH + SER+
Sbjct: 84 QVLQAQLQRLHIDTENLREEKDSEITST----RDELLSARDEILLLHQAAAKVASERDTD 139
Query: 108 MRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDV 167
+ +L E++ K+ AEL+ E++K T QN R Q +D QR
Sbjct: 140 IASLQEELKKVRAELERWRKAASEYEKEITSLQNSFQLR-------CQQCEDQQR----- 187
Query: 168 QQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLES-LQVMEKNYITMATEVEKLRAEL 226
++ L ELE LR+E++ T + K N L S LQ EK + +L ++L
Sbjct: 188 EEATRLQGELEKLRKEWNALE-TECHSLKRENVLLSSELQRQEKELHNSQKQSLELTSDL 246
Query: 227 MNAPNVDRRAADGSYG 242
+ + R+ + G
Sbjct: 247 -SILQMSRKELENQVG 261
>UNIPROTKB|B7Z863 [details] [associations]
symbol:SLMAP "cDNA FLJ54742, highly similar to Mus musculus
sarcolemma associated protein (Slmap), mRNA" species:9606 "Homo
sapiens" [GO:0006457 "protein folding" evidence=IEA] [GO:0016272
"prefoldin complex" evidence=IEA] [GO:0051082 "unfolded protein
binding" evidence=IEA] InterPro:IPR002777 Pfam:PF01920
GO:GO:0006457 GO:GO:0016272 EMBL:AC114480 UniGene:Hs.476432
HGNC:HGNC:16643 ChiTaRS:SLMAP HOGENOM:HOG000072709 EMBL:AC099777
EMBL:AK302934 IPI:IPI00945565 STRING:B7Z863 Ensembl:ENST00000494088
UCSC:uc011bfc.1 HOVERGEN:HBG087998 Uniprot:B7Z863
Length = 318
Score = 125 (49.1 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 51/196 (26%), Positives = 91/196 (46%)
Query: 49 EVMEQKIASQHVEMQKLATE-NQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQ 107
+V++ ++ H++ + L E + + +T R EL +A+ E+ +LH + SER+
Sbjct: 39 QVLQAQLQRLHIDTENLREEKDSEITST----RDELLSARDEILLLHQAAAKVASERDTD 94
Query: 108 MRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDV 167
+ +L E++ K+ AEL+ E++K T QN R Q +D QR
Sbjct: 95 IASLQEELKKVRAELERWRKAASEYEKEITSLQNSFQLR-------CQQCEDQQR----- 142
Query: 168 QQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLES-LQVMEKNYITMATEVEKLRAEL 226
++ L ELE LR+E++ T + K N L S LQ EK + +L ++L
Sbjct: 143 EEATRLQGELEKLRKEWNALE-TECHSLKRENVLLSSELQRQEKELHNSQKQSLELTSDL 201
Query: 227 MNAPNVDRRAADGSYG 242
+ + R+ + G
Sbjct: 202 -SILQMSRKELENQVG 216
>RGD|628797 [details] [associations]
symbol:Prpmp5 "proline-rich protein MP5" species:10116 "Rattus
norvegicus" [GO:0005576 "extracellular region" evidence=IEA]
RGD:628797 GO:GO:0005576 InterPro:IPR026086 PANTHER:PTHR23203
CTD:5542 KO:K13911 EMBL:L17318 EMBL:M11899 IPI:IPI00187926
PIR:B48013 RefSeq:NP_742062.1 UniGene:Rn.29950 GeneID:257651
KEGG:rno:257651 UCSC:RGD:628797 NextBio:624204
Genevestigator:P10165 Uniprot:P10165
Length = 295
Score = 124 (48.7 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 63/200 (31%), Positives = 77/200 (38%)
Query: 311 PRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQR-- 368
P G + PG + + P P GP P +GP P GP Q GS
Sbjct: 101 PPAAGPQRPPQPG--SPQGPP--PPGGPQQRPPQGP--PPQGGPQRPPQPGSPQGPPPPG 154
Query: 369 GPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGP---GYETQRVP-GYDVQRGPVYEAQR 424
GP +GP PQ G QR P +GP G QR P G Q GP QR
Sbjct: 155 GPQQRPPQGPP--PQGG----PQRPPQPGSPQGPPPPGGPQQRAPQGPPPQGGP----QR 204
Query: 425 APSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPP--PLNNVPY 482
P +GP G +R P P +G G P+ +P G PP P P
Sbjct: 205 PPQPGSPQGPP-----PPGGPQQRPPQGPPPQG-GPQRPPQPGSPQGPPPPGGPQQRPPQ 258
Query: 483 GSATPPARSGSGQP-RGGNP 501
G PP + G +P + GNP
Sbjct: 259 G---PPPQGGPQRPPQPGNP 275
>ZFIN|ZDB-GENE-030131-8373 [details] [associations]
symbol:col10a1 "collagen, type X, alpha 1"
species:7955 "Danio rerio" [GO:0005576 "extracellular region"
evidence=IEA] [GO:0005581 "collagen" evidence=IEA]
InterPro:IPR008983 ZFIN:ZDB-GENE-030131-8373 GO:GO:0005581
Gene3D:2.60.120.40 InterPro:IPR001073 InterPro:IPR008160
Pfam:PF00386 Pfam:PF01391 PRINTS:PR00007 SMART:SM00110
SUPFAM:SSF49842 PROSITE:PS50871 GeneTree:ENSGT00700000104270
OMA:KPGHGSP EMBL:CU306817 IPI:IPI00491103
Ensembl:ENSDART00000091021 ArrayExpress:F1QXD5 Bgee:F1QXD5
Uniprot:F1QXD5
Length = 655
Score = 129 (50.5 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 81/269 (30%), Positives = 107/269 (39%)
Query: 256 PVGQNAYEDGYGVPQGHGPP----PSATTA-GVVGA--GPNTSTSAYAATQSGTPMRAAY 308
P G A +DG G+P GPP P+ +A G G+ GP + A G
Sbjct: 64 PPGP-AGQDGEGLPGPQGPPGAPGPAGYSAPGKPGSPGGPGKPGATGAPGLKGDTGAPGL 122
Query: 309 DIPRG-PGYEASKGP-GYDASKAPSYDPTKGPSYDP-AKGP-GYDPTKG----PGYDAQK 360
PRG PG S GP G A+ P GP+ P A GP G KG PG QK
Sbjct: 123 QGPRGMPGPSGSPGPAGISATGKP------GPAGLPGAMGPRGEQGFKGHPGIPGLPGQK 176
Query: 361 GSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRG-PGYETQR-VPGYDVQRGP 418
G +GP + RGP+ P G G + G PG + PG D + GP
Sbjct: 177 GEMGVGVQGPAGE--RGPT-GPVGPSGKPGAPGVGLPGKPGAPGEAGKSGSPGRDGESGP 233
Query: 419 VY-EAQRAPSYIPQRG-PGYDLQRGQ-GYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPP 475
+ + Q+ + P G PG + G G P P +G GAP G +G+ P
Sbjct: 234 MGPQGQKGQTGAPGVGIPGKPGENGAPGMPGPTGPK-GPQGASGAPGAP-GVPGYGK--P 289
Query: 476 PLNNVPYGSATPPARSGSGQPRGGNPARR 504
N + P + +GQ G P +
Sbjct: 290 GENGLKGDRGVPGSPGTTGQK--GEPGAK 316
>UNIPROTKB|Q04118 [details] [associations]
symbol:PRB3 "Basic salivary proline-rich protein 3"
species:9606 "Homo sapiens" [GO:0005576 "extracellular region"
evidence=NAS] [GO:0051636 "Gram-negative bacterial cell surface
binding" evidence=NAS] [GO:0008150 "biological_process"
evidence=ND] GO:GO:0005576 GO:GO:0051636 InterPro:IPR026086
PANTHER:PTHR23203 EMBL:X07637 EMBL:X07881 EMBL:BC096209
EMBL:BC096210 EMBL:BC096211 IPI:IPI00006699 PIR:A36298 PIR:B36298
PIR:S10889 RefSeq:NP_006240.4 UniGene:Hs.73031 STRING:Q04118
DMDM:229462763 PaxDb:Q04118 PRIDE:Q04118 Ensembl:ENST00000381842
GeneID:5544 KEGG:hsa:5544 CTD:5544 GeneCards:GC12M011418
H-InvDB:HIX0201930 HGNC:HGNC:9339 MIM:168840 neXtProt:NX_Q04118
PharmGKB:PA33701 HOGENOM:HOG000060075 GenomeRNAi:5544 NextBio:21478
ArrayExpress:Q04118 Bgee:Q04118 CleanEx:HS_PRB3
Genevestigator:Q04118 GermOnline:ENSG00000197870 Uniprot:Q04118
Length = 309
Score = 124 (48.7 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 79/271 (29%), Positives = 99/271 (36%)
Query: 248 SENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAA 307
S + SG+P G+ G PQ PPP G G N S G P R
Sbjct: 28 SPSVISGKPEGRRP--QGGNQPQ-RTPPPPGKPEGRPPQGGNQS--------QGPPPRPG 76
Query: 308 YDIPRGP---GYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNY 364
P GP G S+GP K P P +G + ++GP P K G Q G N
Sbjct: 77 K--PEGPPPQGGNQSQGPPPRPGK-PEGQPPQGGNQ--SQGPPPRPGKPEGPPPQ-GGNQ 130
Query: 365 DAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGP----GYETQRVPGYDVQ-RGPV 419
P GP P +G P+ GP G ++Q P + GP
Sbjct: 131 SQGPPPRPGKPEGP---PPQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRPGKPEGPP 187
Query: 420 YEAQRAPSYIPQRGPGY-DLQRGQGYDMRRAPSYDPSR--GTGFDGA--PRGAAPH-G-- 471
+ P R PG + QG + + P P + G+ G P+G PH G
Sbjct: 188 PQGGNQSQGPPPR-PGKPEGPPPQGGNQSQGPPPRPGKPEGSPSQGGNKPQGPPPHPGKP 246
Query: 472 QVPPPLN-NVPYGSATPPARSGSGQPRGGNP 501
Q PPP N P PP R P GGNP
Sbjct: 247 QGPPPQEGNKPQ-RPPPPGRPQGPPPPGGNP 276
>TAIR|locus:2204400 [details] [associations]
symbol:AT1G76010 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005576
"extracellular region" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR002775 Pfam:PF01918 EMBL:CP002684
GO:GO:0005829 GO:GO:0003676 EMBL:AF412102 EMBL:AY054208
EMBL:AF428441 EMBL:AY124847 IPI:IPI00531013 RefSeq:NP_565124.1
UniGene:At.24580 UniGene:At.67776 UniGene:At.75066 HSSP:P60849
ProteinModelPortal:Q93VA8 SMR:Q93VA8 STRING:Q93VA8 PRIDE:Q93VA8
EnsemblPlants:AT1G76010.1 GeneID:843932 KEGG:ath:AT1G76010
TAIR:At1g76010 HOGENOM:HOG000240806 InParanoid:Q93VA8 OMA:YDGPPQG
PhylomeDB:Q93VA8 ProtClustDB:CLSN2917456 Genevestigator:Q93VA8
Uniprot:Q93VA8
Length = 350
Score = 125 (49.1 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 70/207 (33%), Positives = 88/207 (42%)
Query: 255 RPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQ---SGTPMRAAYDIP 311
+P+G YE G P G G G G +AY + G +Y
Sbjct: 134 KPMGDIDYEGREGSPGGRGRGRGRGRGR--GRGRGGRGNAYVNVEHEDGGWEREQSYGRG 191
Query: 312 RGPGY-EASKGPGYDASKAP--SYDPTK--GPSYD-PAKGPGYDPTKGPGYDA--QKGSN 363
RG G +S+G G P YD + G YD P + GYD +G GYDA Q
Sbjct: 192 RGRGRGRSSRGRGRGGYNGPPNEYDAPQDGGYGYDAPHEHRGYDD-RG-GYDAPPQGRGG 249
Query: 364 YDAQRGPN-YDIHRGP-SYD--PQ-RGLGYDMQRGPNYDMQRGPGYE--TQRVPGYDVQR 416
YD +G YD +G YD PQ RG GYD GP+ RG GY+ +Q GYD
Sbjct: 250 YDGPQGRGGYDGPQGRRGYDGPPQGRG-GYD---GPSQG--RG-GYDGPSQGRGGYD--- 299
Query: 417 GPVYEAQRAPSYIPQRGPGYDLQRGQG 443
GP +Q Y +G G RG+G
Sbjct: 300 GP---SQGRGGYDGPQGRGRGRGRGRG 323
>UNIPROTKB|P08125 [details] [associations]
symbol:COL10A1 "Collagen alpha-1(X) chain" species:9031
"Gallus gallus" [GO:0005581 "collagen" evidence=IEA]
InterPro:IPR008983 HOGENOM:HOG000085653 HOVERGEN:HBG108220
GO:GO:0005581 Gene3D:2.60.120.40 InterPro:IPR001073
InterPro:IPR008160 Pfam:PF00386 Pfam:PF01391 PRINTS:PR00007
SMART:SM00110 SUPFAM:SSF49842 PROSITE:PS50871 eggNOG:NOG114228
OrthoDB:EOG4FFD29 EMBL:M13496 EMBL:J04194 IPI:IPI00600819
PIR:S23297 ProteinModelPortal:P08125 SMR:P08125 STRING:P08125
InParanoid:P08125 Reactome:REACT_132934 PMAP-CutDB:P08125
Uniprot:P08125
Length = 674
Score = 129 (50.5 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 91/291 (31%), Positives = 115/291 (39%)
Query: 238 DGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGA-GPNTSTSAYA 296
D GA G + P G+ E G G P GPP A G G GP
Sbjct: 229 DRGLPGARGEAGIPGPQGPPGEPG-EVGIGKPGPMGPPGPAGIPGAKGLPGP-------- 279
Query: 297 ATQSGTPMRAAYDIPRGPGYEASKGP-GYDASKAPSYDPTKGPSYDPAK-GP-GYDPTKG 353
A G+P + P PG + +GP G P D +GP+ P + GP G G
Sbjct: 280 AGLPGSPGLPGFGKPGLPGMKGHRGPEGPPGFPGPKGD--QGPAGVPGELGPAGPQGNMG 337
Query: 354 P-GYDAQKGSNYDAQRGPNYDIHR-GPSYDP----QRGL-GYDMQRGPNYDMQRG-PGYE 405
P G G N GP D+ GP+ P +RGL G D + P Y ++G PG +
Sbjct: 338 PQGLKGLPGEN--GLPGPKGDMGPVGPAGFPGAKGERGLPGLDGK--PGYPGEQGLPGPK 393
Query: 406 TQRVPGYDVQRGPVYEAQRA--PSYI-PQ--RG-PGYDLQRGQGYDMRRAPSYDPS-RGT 458
PG Q+G A P + PQ +G PG + + G R PS P RG
Sbjct: 394 GH--PGLPGQKGDTGHAGHPGLPGPVGPQGVKGVPGINGEPGP-----RGPSGIPGVRGP 446
Query: 459 ----GFDGAP--RGAAPHGQVPPPLNNV------PYGSATPPARSG-SGQP 496
G GAP +G A +P P V P G PP G SG+P
Sbjct: 447 IGPPGMPGAPGAKGEAGAPGLPGPAGIVTKGLRGPMGPLGPPGPKGNSGEP 497
>UNIPROTKB|F1RZK4 [details] [associations]
symbol:COL10A1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005938 "cell cortex" evidence=IEA] [GO:0005581
"collagen" evidence=IEA] InterPro:IPR008983 GO:GO:0005938
GO:GO:0005581 Gene3D:2.60.120.40 InterPro:IPR001073
InterPro:IPR008160 Pfam:PF00386 Pfam:PF01391 PRINTS:PR00007
SMART:SM00110 SUPFAM:SSF49842 PROSITE:PS50871
GeneTree:ENSGT00700000104270 OMA:IKGPPPN EMBL:CU062641
Ensembl:ENSSSCT00000004901 Uniprot:F1RZK4
Length = 675
Score = 129 (50.5 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 88/295 (29%), Positives = 112/295 (37%)
Query: 235 RAADGSYG--GATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVG--AGPNT 290
+ A G G G G + GRP G G P G PP G G P
Sbjct: 177 KGAPGVPGINGQKGETGYGAPGRP-GDRGLPGPQG-PMGPPGPPGVGKRGENGFPGQPGI 234
Query: 291 STSAYAATQSGTPMRAAYDIPRGP-GYEASKG---PGYD-ASKAPSYDPTKG----PSY- 340
+SG P A P+GP G + +G PG A+ P TKG P
Sbjct: 235 KGDRGFPGESG-P--AGPPGPQGPPGEQGREGIGKPGAPGAAGQPGLPGTKGHPGAPGMA 291
Query: 341 DPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDP-QRGL-GYDMQRGPNYDM 398
P PG+ PG Q+G P +GP+ P + GL G RGP
Sbjct: 292 GPPGAPGFGKPGLPGLKGQRGP-IGLPGAPGAKGEQGPAGHPGEPGLTGPPGSRGP---- 346
Query: 399 QRGPGYETQRVPGYDVQRGPVYEAQRA-PSYIP----QRGP-GYDLQRGQ-GYDMRRAPS 451
+GP + +PG + GP E A P+ P +RGP G D + G G P
Sbjct: 347 -QGP----KGIPGNNGVPGPKGEIGLAGPAGFPGAKGERGPSGLDGKPGYPGEPGLNGPK 401
Query: 452 YDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRG--GNPARR 504
+P G G P P G +P P+ P G+ P +G G PRG G P R
Sbjct: 402 GNPGL-PGPKGDPGIGGPPG-LPGPVG--PAGAKGVPGHNGEGGPRGAPGIPGTR 452
>UNIPROTKB|B7Z964 [details] [associations]
symbol:SLMAP "cDNA, FLJ79335, highly similar to Homo
sapiens sarcolemma associated protein (SLMAP), mRNA" species:9606
"Homo sapiens" [GO:0006457 "protein folding" evidence=IEA]
[GO:0016272 "prefoldin complex" evidence=IEA] [GO:0051082 "unfolded
protein binding" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] InterPro:IPR002777 Pfam:PF01920 GO:GO:0016021
GO:GO:0006457 GO:GO:0016272 EMBL:AC114480 UniGene:Hs.476432
HGNC:HGNC:16643 ChiTaRS:SLMAP HOGENOM:HOG000072709 EMBL:AC099777
HOVERGEN:HBG087998 EMBL:AK304493 EMBL:AK316436 IPI:IPI00946123
STRING:B7Z964 Ensembl:ENST00000495364 UCSC:uc011bfa.1
Uniprot:B7Z964
Length = 362
Score = 125 (49.1 bits), Expect = 7.6e-05, P = 7.6e-05
Identities = 51/196 (26%), Positives = 91/196 (46%)
Query: 49 EVMEQKIASQHVEMQKLATE-NQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQ 107
+V++ ++ H++ + L E + + +T R EL +A+ E+ +LH + SER+
Sbjct: 80 QVLQAQLQRLHIDTENLREEKDSEITST----RDELLSARDEILLLHQAAAKVASERDTD 135
Query: 108 MRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDV 167
+ +L E++ K+ AEL+ E++K T QN R Q +D QR
Sbjct: 136 IASLQEELKKVRAELERWRKAASEYEKEITSLQNSFQLR-------CQQCEDQQR----- 183
Query: 168 QQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLES-LQVMEKNYITMATEVEKLRAEL 226
++ L ELE LR+E++ T + K N L S LQ EK + +L ++L
Sbjct: 184 EEATRLQGELEKLRKEWNALE-TECHSLKRENVLLSSELQRQEKELHNSQKQSLELTSDL 242
Query: 227 MNAPNVDRRAADGSYG 242
+ + R+ + G
Sbjct: 243 -SILQMSRKELENQVG 257
>UNIPROTKB|G8ENL4 [details] [associations]
symbol:FUS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001876 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00641
PROSITE:PS01358 PROSITE:PS50102 PROSITE:PS50199 SMART:SM00360
SMART:SM00547 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063105 EMBL:CU464163 EMBL:JF940526
Ensembl:ENSSSCT00000036326 Uniprot:G8ENL4
Length = 517
Score = 127 (49.8 bits), Expect = 8.3e-05, P = 8.3e-05
Identities = 68/240 (28%), Positives = 93/240 (38%)
Query: 239 GSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAAT 298
G+Y G ++ S +P GQ +Y GYG ++ G NT A +A
Sbjct: 15 GAYPTQPGQGYSQQSNQPYGQQSYS-GYGQSADTSGYGQSSYGSSYGQTQNTGYGAQSAP 73
Query: 299 QSGTPMRAAYDIPRGP--GY-EASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPG 355
Q G Y +G Y + S PGY APS T G ++ GY + G
Sbjct: 74 Q-GYGSTGGYGSGQGSQSSYGQQSSYPGYGQQPAPS--STSGSYGTSSQSSGYGQPQSGG 130
Query: 356 YDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYET--QRVPGYD 413
Y Q G Y Q+ +Y + SY+P +G G Q + G G + Q P
Sbjct: 131 YGQQSG--YGGQQ-QSYGQQQ--SYNPPQGYGQQNQYNSSSGGGGGGGGGSYGQDQPSMS 185
Query: 414 VQRGPVYEAQ-RAPSYI--PQ----RGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRG 466
G Y Q ++ Y Q RG G G GY+ R + Y+P RG G RG
Sbjct: 186 GGGGGGYGNQDQSGGYGGGQQDRGGRGRGGGSGGGGGYN-RSSGGYEP-RGRGGGRGGRG 243
>UNIPROTKB|E2RA07 [details] [associations]
symbol:EWSR1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00641 PROSITE:PS01358
PROSITE:PS50102 PROSITE:PS50199 SMART:SM00360 SMART:SM00547
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 GeneTree:ENSGT00530000063105 OMA:EGTSTGY
EMBL:AAEX03014786 EMBL:AAEX03014787 Ensembl:ENSCAFT00000019384
Uniprot:E2RA07
Length = 671
Score = 117 (46.2 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 63/238 (26%), Positives = 87/238 (36%)
Query: 239 GSYGGATGNSENETSGRPV-GQNAYEDGYGVPQ-GHGPP--PSATTAGVVGAGP---NTS 291
G+YG T S + GQ AY YG P G+ P P A + V G G +T+
Sbjct: 43 GTYGQPTDVSYTQAQTTATYGQTAYATSYGQPPAGYTTPTAPQAYSQPVQGYGTGAYDTT 102
Query: 292 TSAYAATQSGTPMRAAYDI-PRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPG-YD 349
T+ TQ+ ++AY P P Y + P A P + P G Y+
Sbjct: 103 TATVTTTQASYAAQSAYGTQPAYPAY--GQQPAATAPARPQDGNKPAETSQPQSSTGGYN 160
Query: 350 -PTKGPGYDAQKGSNYDAQRG--PNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYET 406
P+ G G Q +Y G P + PSY P R ++ Y R Y +
Sbjct: 161 QPSLGYG---QSNYSYPQVPGSYPMQPVTAPPSYPPTR---FNSSSLKLYHYSRS--YSS 212
Query: 407 QRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAP 464
+ YD PS Q+ Y Q Y + SY P G+ + AP
Sbjct: 213 TQPTSYDQSSYSQQNTYGQPSSYGQQS-SYGQQ--SSYGQQPPTSYPPQTGS-YSQAP 266
Score = 57 (25.1 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 19/46 (41%), Positives = 21/46 (45%)
Query: 465 RGAAP--HGQ-VPPPLNNVPYGSATP--PA--RSGSGQPRGGNPAR 503
RG P G+ +PPPL P G P P G G RGG P R
Sbjct: 470 RGGMPPREGRGMPPPLRGGPGGPGGPGGPMGRMGGRGGDRGGFPPR 515
>RGD|71029 [details] [associations]
symbol:Col3a1 "collagen, type III, alpha 1" species:10116 "Rattus
norvegicus" [GO:0001501 "skeletal system development" evidence=IEP]
[GO:0001568 "blood vessel development" evidence=IEA;ISO] [GO:0005201
"extracellular matrix structural constituent" evidence=IEA]
[GO:0005581 "collagen" evidence=ISO] [GO:0005586 "collagen type III"
evidence=ISO;TAS] [GO:0005615 "extracellular space" evidence=IEA]
[GO:0007160 "cell-matrix adhesion" evidence=IEA] [GO:0007179
"transforming growth factor beta receptor signaling pathway"
evidence=IEA] [GO:0007229 "integrin-mediated signaling pathway"
evidence=IEA] [GO:0007507 "heart development" evidence=IEA]
[GO:0009314 "response to radiation" evidence=IEA] [GO:0018149
"peptide cross-linking" evidence=IEA] [GO:0030199 "collagen fibril
organization" evidence=IEA;ISO] [GO:0031012 "extracellular matrix"
evidence=ISO] [GO:0032964 "collagen biosynthetic process"
evidence=IEA] [GO:0034097 "response to cytokine stimulus"
evidence=IEA] [GO:0042060 "wound healing" evidence=IEA] [GO:0043206
"extracellular fibril organization" evidence=IEA] [GO:0043588 "skin
development" evidence=IEA] [GO:0046332 "SMAD binding"
evidence=IEA;ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0048407 "platelet-derived growth factor binding" evidence=IEA]
[GO:0048565 "digestive tract development" evidence=IEA;ISO]
[GO:0050777 "negative regulation of immune response" evidence=IEA]
[GO:0071230 "cellular response to amino acid stimulus"
evidence=IEA;ISO] InterPro:IPR000885 InterPro:IPR001007 Pfam:PF00093
Pfam:PF01410 ProDom:PD002078 PROSITE:PS01208 PROSITE:PS50184
PROSITE:PS51461 SMART:SM00038 SMART:SM00214 RGD:71029 GO:GO:0043588
GO:GO:0005615 GO:GO:0007507 GO:GO:0046872 GO:GO:0034097
GO:GO:0030199 GO:GO:0001501 GO:GO:0007179 GO:GO:0007229
GO:GO:0007160 InterPro:IPR008160 Pfam:PF01391 eggNOG:NOG12793
GO:GO:0042060 GO:GO:0001568 GO:GO:0048565 GO:GO:0050777
GO:GO:0009314 GO:GO:0018149 GO:GO:0032964 GO:GO:0071230
GO:GO:0043206 GO:GO:0005201 GeneTree:ENSGT00660000095287
HOGENOM:HOG000085654 HOVERGEN:HBG004933 KO:K06236 OrthoDB:EOG4FTW1C
CTD:1281 OMA:EGSPGHP GO:GO:0005586 EMBL:BC087039 EMBL:X70369
EMBL:AJ005395 EMBL:M21354 IPI:IPI00366944 PIR:S41067
RefSeq:NP_114474.1 UniGene:Rn.3247 ProteinModelPortal:P13941
IntAct:P13941 STRING:P13941 PRIDE:P13941 Ensembl:ENSRNOT00000004956
GeneID:84032 KEGG:rno:84032 UCSC:RGD:71029 InParanoid:P13941
NextBio:616623 Genevestigator:P13941 GermOnline:ENSRNOG00000003357
Uniprot:P13941
Length = 1463
Score = 132 (51.5 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 76/261 (29%), Positives = 102/261 (39%)
Query: 258 GQNAYEDGYGVPQGHGPPPSATTAGVVGA----GPNTSTSAYAAT-QSGTPMRAAYDIPR 312
G + G P GPP +A G GA GP S + + Q G P + +
Sbjct: 320 GNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGSPGQRGEPGPQGHAGAQ 379
Query: 313 GP-GYEASKG-PGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGP 370
GP G + G PG P+ P P A+GP P G Q+G + + G
Sbjct: 380 GPPGPPGNNGSPGGKGEMGPAGIPG-APGLLGARGPP-GPAGANGAPGQRGPS--GEPGK 435
Query: 371 NYDIHRGPSYDPQRG-LGYDMQRGPN-YDMQRG-PGYE-TQRVPGYDVQRG-PVYEAQRA 425
N P +RG G GP D + G PG VPG +RG P +
Sbjct: 436 N-GAKGEPGARGERGEAGSPGIPGPKGEDGKDGSPGEPGANGVPGNPGERGAPGFRGPAG 494
Query: 426 PSYIP-QRGPGYDLQRGQGYDMRRAPSYDPSR-GT-------GFDGAPRGAAPHGQVPPP 476
P+ P ++GP + + G G R + +P R GT G G+P G G+ PP
Sbjct: 495 PNGAPGEKGPAGE-RGGPGPAGPRGVAGEPGRDGTPGGPGIRGMPGSPGGPGNDGKPGPP 553
Query: 477 LNNVPYGSATPPARSGS-GQP 496
+ G PP SG GQP
Sbjct: 554 GSQGESGRPGPPGPSGPRGQP 574
Score = 129 (50.5 bits), Expect = 0.00019, P = 0.00019
Identities = 83/290 (28%), Positives = 106/290 (36%)
Query: 233 DRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGA-GP--- 288
D ++ G GG G + P G + + G P GPP AG G GP
Sbjct: 160 DVKSGVGGMGGYPGPAGPPGPPGPPGSSGHPGSPGSPGYQGPPGEPGQAGPAGPPGPPGA 219
Query: 289 -NTSTSAYAATQSGTPMRAAY-DIPRGPGYEASKG-PGYDASKAP-SYDPTKGPSYDPAK 344
S A +SG P R +P PG + G PG+ K +D G +
Sbjct: 220 IGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETG- 278
Query: 345 GPGYDPTKG-PGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGL-GYDMQRGPNYDMQRGP 402
PG G PG + G RG + R P G G D RG D Q GP
Sbjct: 279 APGLKGENGLPGDNGAPGPM--GPRGAPGERGR-PGLPGAAGARGNDGARGS--DGQPGP 333
Query: 403 -GYE-TQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGF 460
G T PG +G V A S PG QRG+ A + P G
Sbjct: 334 PGPPGTAGFPGSPGAKGEVGPAGSPGS---NGSPG---QRGEPGPQGHAGAQGPPGPPGN 387
Query: 461 DGAPRGAAPHGQVPPPLNNVP--YGSATPPARSGS-GQP--RG--GNPAR 503
+G+P G G P + P G+ PP +G+ G P RG G P +
Sbjct: 388 NGSPGGKGEMG--PAGIPGAPGLLGARGPPGPAGANGAPGQRGPSGEPGK 435
>UNIPROTKB|Q92734 [details] [associations]
symbol:TFG "Protein TFG" species:9606 "Homo sapiens"
[GO:0008219 "cell death" evidence=IEA] [GO:0042802 "identical
protein binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=NAS] [GO:0043123 "positive regulation of I-kappaB
kinase/NF-kappaB cascade" evidence=IMP] [GO:0004871 "signal
transducer activity" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007165 "signal transduction" evidence=IMP]
InterPro:IPR000270 Pfam:PF00564 SMART:SM00666 GO:GO:0005737
GO:GO:0008219 GO:GO:0043123 EMBL:CH471052 GO:GO:0004871 MIM:188550
Orphanet:146 EMBL:X85960 EMBL:Y07968 EMBL:AK093456 EMBL:BT007428
EMBL:CR456781 EMBL:AC068763 EMBL:BC001483 EMBL:BC009241
EMBL:BC023599 IPI:IPI00294619 RefSeq:NP_001007566.1
RefSeq:NP_001182407.1 RefSeq:NP_001182408.1 RefSeq:NP_006061.2
UniGene:Hs.518123 ProteinModelPortal:Q92734 SMR:Q92734
IntAct:Q92734 MINT:MINT-1156489 STRING:Q92734 PhosphoSite:Q92734
DMDM:223634676 PaxDb:Q92734 PRIDE:Q92734 DNASU:10342
Ensembl:ENST00000240851 Ensembl:ENST00000490574 GeneID:10342
KEGG:hsa:10342 UCSC:uc003due.3 CTD:10342 GeneCards:GC03P100428
H-InvDB:HIX0003505 HGNC:HGNC:11758 HPA:HPA019473 MIM:602498
MIM:604484 neXtProt:NX_Q92734 PharmGKB:PA36473 eggNOG:NOG85275
HOGENOM:HOG000132915 HOVERGEN:HBG009087 InParanoid:Q92734 KO:K09292
OMA:YTTQTSQ OrthoDB:EOG40K80D PhylomeDB:Q92734 ChiTaRS:TFG
GenomeRNAi:10342 NextBio:39217 ArrayExpress:Q92734 Bgee:Q92734
CleanEx:HS_TFG Genevestigator:Q92734 GermOnline:ENSG00000114354
Uniprot:Q92734
Length = 400
Score = 125 (49.1 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 84/306 (27%), Positives = 109/306 (35%)
Query: 216 ATEVEKLRAELMNAPNVDRRAAD-----GSYGGATGNSENET-SGRPVGQNAYEDGYGVP 269
+++V+ LR EL+ N R D G G +T EN+T GR + G
Sbjct: 99 SSQVKYLRRELIELRNKVNRLLDSLEPPGEPGPSTNIPENDTVDGREEKSASDSSGKQST 158
Query: 270 QGHGPPPSATTAGVVGAGPNTST-SAYAATQ---SGTPMRAAYDIPRGPGYEASKGPGYD 325
Q SA N + SA+ T SG P A D P AS
Sbjct: 159 QVMAASMSAFDPLKNQDEINKNVMSAFGLTDDQVSGPPSAPAEDRSGTPDSIASSS---S 215
Query: 326 ASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDA-QKGSNYDAQRGPNYDIHRGPSYDPQR 384
A+ P P + P Y A+ +G Y Q+ + Y AQ+ P + Y Q
Sbjct: 216 AAHPPGVQPQQ-PPYTGAQTQA-GQIEGQMYQQYQQQAGYGAQQ-PQAPPQQPQQYGIQY 272
Query: 385 GLGYDMQRGPNYDMQ-RGPGYE-TQRVPGYDVQRGPVY-EAQRAPSYIPQRGPG--YDLQ 439
Y Q GP Q +G G + T + P P AQ Y P Y Q
Sbjct: 273 SASYSQQTGPQQPQQFQGYGQQPTSQAPAPAFSGQPQQLPAQPPQQYQASNYPAQTYTAQ 332
Query: 440 RGQGYDMRRAPSYDPSRGTGFDGA--PR-G--AAPHGQV-PPPLNNVPYGSATPPARSGS 493
Q + AP+ P GA PR G + P + PPP PY PP G
Sbjct: 333 TSQPTNYTVAPASQPGMAPSQPGAYQPRPGFTSLPGSTMTPPPSGPNPYARNRPPFGQGY 392
Query: 494 GQPRGG 499
QP G
Sbjct: 393 TQPGPG 398
>UNIPROTKB|H7C3M8 [details] [associations]
symbol:SLMAP "Sarcolemmal membrane-associated protein"
species:9606 "Homo sapiens" [GO:0006457 "protein folding"
evidence=IEA] [GO:0016272 "prefoldin complex" evidence=IEA]
[GO:0051082 "unfolded protein binding" evidence=IEA]
InterPro:IPR002777 Pfam:PF01920 GO:GO:0006457 GO:GO:0016272
EMBL:AC114480 HGNC:HGNC:16643 ChiTaRS:SLMAP EMBL:AC099777
ProteinModelPortal:H7C3M8 PRIDE:H7C3M8 Ensembl:ENST00000417128
Uniprot:H7C3M8
Length = 409
Score = 125 (49.1 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 51/196 (26%), Positives = 91/196 (46%)
Query: 49 EVMEQKIASQHVEMQKLATE-NQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQ 107
+V++ ++ H++ + L E + + +T R EL +A+ E+ +LH + SER+
Sbjct: 130 QVLQAQLQRLHIDTENLREEKDSEITST----RDELLSARDEILLLHQAAAKVASERDTD 185
Query: 108 MRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDV 167
+ +L E++ K+ AEL+ E++K T QN R Q +D QR
Sbjct: 186 IASLQEELKKVRAELERWRKAASEYEKEITSLQNSFQLR-------CQQCEDQQR----- 233
Query: 168 QQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLES-LQVMEKNYITMATEVEKLRAEL 226
++ L ELE LR+E++ T + K N L S LQ EK + +L ++L
Sbjct: 234 EEATRLQGELEKLRKEWNALE-TECHSLKRENVLLSSELQRQEKELHNSQKQSLELTSDL 292
Query: 227 MNAPNVDRRAADGSYG 242
+ + R+ + G
Sbjct: 293 -SILQMSRKELENQVG 307
>UNIPROTKB|Q8WML4 [details] [associations]
symbol:MUC1 "Mucin-1" species:9913 "Bos taurus" [GO:0016324
"apical plasma membrane" evidence=IBA] [GO:0009986 "cell surface"
evidence=IBA] [GO:0005737 "cytoplasm" evidence=IBA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] PANTHER:PTHR10006 GO:GO:0016021 GO:GO:0005634
GO:GO:0005737 GO:GO:0009986 GO:GO:0016324 InterPro:IPR000082
Pfam:PF01390 SMART:SM00200 PROSITE:PS50024 EMBL:AJ400824
EMBL:AF399757 IPI:IPI00706283 RefSeq:NP_776540.1 UniGene:Bt.9561
HSSP:Q16615 ProteinModelPortal:Q8WML4 SMR:Q8WML4 STRING:Q8WML4
MEROPS:S71.001 Ensembl:ENSBTAT00000014051 GeneID:281333
KEGG:bta:281333 CTD:4582 eggNOG:NOG77744
GeneTree:ENSGT00700000104548 HOGENOM:HOG000290201
HOVERGEN:HBG003075 InParanoid:Q8WML4 KO:K06568 OMA:PPAHGVT
OrthoDB:EOG4NGGNM NextBio:20805343 PMAP-CutDB:Q8WML4
ArrayExpress:Q8WML4 InterPro:IPR023217 Uniprot:Q8WML4
Length = 580
Score = 127 (49.8 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 49/202 (24%), Positives = 71/202 (35%)
Query: 264 DGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRG-PGYEASKGP 322
DG P P A + G GA +T TS+ A + + +P P P + P
Sbjct: 81 DGASTPTSSPAPSPAASPGHDGA--STPTSSPAPSPAASPGHDGASTPTSSPAPSPAASP 138
Query: 323 GYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDP 382
G+D + P+ P P+ P PT P +D P P+ P
Sbjct: 139 GHDGASTPTSSPAPSPAASPGHNGTSSPTGSPAPSPAASPGHDGASTPT----SSPAPSP 194
Query: 383 QRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQ 442
G++ P P PG+D P + APS P PG++ G
Sbjct: 195 AASPGHNGTSSPTGSPAPSPAAS----PGHDGASTPT--SSPAPS--PAASPGHN---GT 243
Query: 443 GYDMRRAPSYDPSRGTGFDGAP 464
+P+ P+ G D AP
Sbjct: 244 S-SPTGSPAPSPTASPGHDSAP 264
Score = 121 (47.7 bits), Expect = 0.00044, P = 0.00044
Identities = 59/236 (25%), Positives = 82/236 (34%)
Query: 276 PSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASK----GPGYDASKAPS 331
P +TT + P TS T T A PG++ + P + +P
Sbjct: 40 PVSTTQSSPTSSPTKETSWSTTTTLLTASSPAPSPAASPGHDGASTPTSSPAPSPAASPG 99
Query: 332 YD----PTKGPSYDPAKGPGYD----PTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQ 383
+D PT P+ PA PG+D PT P +D P P+ P
Sbjct: 100 HDGASTPTSSPAPSPAASPGHDGASTPTSSPAPSPAASPGHDGASTPT----SSPAPSPA 155
Query: 384 RGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQG 443
G++ P P PG+D P + APS P PG++ G
Sbjct: 156 ASPGHNGTSSPTGSPAPSPAAS----PGHDGASTPT--SSPAPS--PAASPGHN---GTS 204
Query: 444 YDMRRAPSYDPSRGTGFDGA--PRGA-APHGQVPPPLNNV--PYGSATPPARSGSG 494
+P+ P+ G DGA P + AP P N P GS P + G
Sbjct: 205 -SPTGSPAPSPAASPGHDGASTPTSSPAPSPAASPGHNGTSSPTGSPAPSPTASPG 259
Score = 121 (47.7 bits), Expect = 0.00044, P = 0.00044
Identities = 55/234 (23%), Positives = 80/234 (34%)
Query: 275 PPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDP 334
P T + P +S + + + T + A P P AS PG+D + P+ P
Sbjct: 35 PRRTTPVSTTQSSPTSSPTKETSWSTTTTLLTASS-P-APSPAAS--PGHDGASTPTSSP 90
Query: 335 TKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGP 394
P+ P PT P +D P P+ P G+D P
Sbjct: 91 APSPAASPGHDGASTPTSSPAPSPAASPGHDGASTPT----SSPAPSPAASPGHDGASTP 146
Query: 395 NYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDP 454
P PG++ P APS P PG+D +P+ P
Sbjct: 147 TSSPAPSPAAS----PGHNGTSSPT--GSPAPS--PAASPGHDGASTPTSSPAPSPAASP 198
Query: 455 SR-GTGFD-GAPR---GAAP-HGQVPPPLNNVPYGSATPPARSGSGQPRGGNPA 502
GT G+P A+P H P ++ A P +G+ P G +PA
Sbjct: 199 GHNGTSSPTGSPAPSPAASPGHDGASTPTSSPAPSPAASPGHNGTSSPTG-SPA 251
>UNIPROTKB|H7BZK0 [details] [associations]
symbol:SLMAP "Sarcolemmal membrane-associated protein"
species:9606 "Homo sapiens" [GO:0006457 "protein folding"
evidence=IEA] [GO:0016272 "prefoldin complex" evidence=IEA]
[GO:0051082 "unfolded protein binding" evidence=IEA]
InterPro:IPR002777 Pfam:PF01920 GO:GO:0006457 GO:GO:0016272
EMBL:AC114480 HGNC:HGNC:16643 ChiTaRS:SLMAP EMBL:AC099777
ProteinModelPortal:H7BZK0 PRIDE:H7BZK0 Ensembl:ENST00000416658
Uniprot:H7BZK0
Length = 433
Score = 125 (49.1 bits), Expect = 0.00010, P = 0.00010
Identities = 51/196 (26%), Positives = 91/196 (46%)
Query: 49 EVMEQKIASQHVEMQKLATE-NQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQ 107
+V++ ++ H++ + L E + + +T R EL +A+ E+ +LH + SER+
Sbjct: 154 QVLQAQLQRLHIDTENLREEKDSEITST----RDELLSARDEILLLHQAAAKVASERDTD 209
Query: 108 MRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDV 167
+ +L E++ K+ AEL+ E++K T QN R Q +D QR
Sbjct: 210 IASLQEELKKVRAELERWRKAASEYEKEITSLQNSFQLR-------CQQCEDQQR----- 257
Query: 168 QQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLES-LQVMEKNYITMATEVEKLRAEL 226
++ L ELE LR+E++ T + K N L S LQ EK + +L ++L
Sbjct: 258 EEATRLQGELEKLRKEWNALE-TECHSLKRENVLLSSELQRQEKELHNSQKQSLELTSDL 316
Query: 227 MNAPNVDRRAADGSYG 242
+ + R+ + G
Sbjct: 317 -SILQMSRKELENQVG 331
>UNIPROTKB|G3N3C9 [details] [associations]
symbol:LDB3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030018 "Z disc" evidence=IEA] [GO:0008092
"cytoskeletal protein binding" evidence=IEA] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0005080 "protein kinase C binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00595 Pfam:PF00412 InterPro:IPR001478 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50106 SMART:SM00132
SMART:SM00228 GO:GO:0030018 GO:GO:0005856 GO:GO:0046872
GO:GO:0008270 Gene3D:2.10.110.10 SUPFAM:SSF50156 OMA:CTSQATT
InterPro:IPR006643 SMART:SM00735 GeneTree:ENSGT00700000104411
EMBL:DAAA02062163 Ensembl:ENSBTAT00000065403 Uniprot:G3N3C9
Length = 730
Score = 128 (50.1 bits), Expect = 0.00010, P = 0.00010
Identities = 50/180 (27%), Positives = 68/180 (37%)
Query: 252 TSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIP 311
TS P + Y + P P P T + P+ A+T S +P A Y P
Sbjct: 379 TSPAPAA-HTYSEAPAAP---APKPRVVTTASIR--PSVYQPVPASTYSPSP-GANYS-P 430
Query: 312 RGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPN 371
P Y S P Y S P+Y P+ P+Y P+ P Y P+ P Y+ S A+
Sbjct: 431 T-P-YTPSPAPAYTPSPTPAYTPSPAPTYSPSPAPAYTPSPAPSYNPTLYSGGPAESASR 488
Query: 372 YDIHRGPSYDPQRGLGYDMQRGPNYDMQRG-PGYETQRVPGYDVQ---RGPVYEAQRAPS 427
S+ + G + RG P Y T P V RG V A+R P+
Sbjct: 489 PPWVTDDSFSQKFAPGKTTTTVSKQSLPRGAPAY-TPPPPAPQVSPLARGTVQRAERFPA 547
>UNIPROTKB|F1NFF0 [details] [associations]
symbol:Gga.41084 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
GeneTree:ENSGT00530000063844 EMBL:AADN02019222 EMBL:AADN02019223
IPI:IPI00821338 Ensembl:ENSGALT00000039659 ArrayExpress:F1NFF0
Uniprot:F1NFF0
Length = 2253
Score = 129 (50.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 86/304 (28%), Positives = 116/304 (38%)
Query: 228 NAPNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVG-A 286
+ PN + D A G+ E E R + YE+ PQ H + + G
Sbjct: 1703 STPNDSQSLQDMHQENAGGHYEPE---RGLSSLQYEEQRN-PQPHQFVEQTESTSIQGEG 1758
Query: 287 GP-------NTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKG-P 338
GP N + + G P ++ P GP GP + AP + G P
Sbjct: 1759 GPLPQHFEENRLPFSLPGQKGGPPQPPIHNAPGGP-----HGPNF-RGPAPQFSEEHGSP 1812
Query: 339 SYDPAKGPG---YDPTKGPG---YDAQKGSN-YDAQRGP--NYDIHRG--PSYDPQRGLG 387
+ D +GP + P KGP + +Q GS + RGP +Y + RG PS
Sbjct: 1813 NSDGQRGPAPGRFGPQKGPIPSLFSSQHGSPLFGDNRGPAPSYGVPRGMSPSQFEDHMEP 1872
Query: 388 YDMQR---GPNY-DMQRGPG-YETQRVPGYDVQRGPV-YEAQRAP---SYIPQRG-PGYD 437
+ QR Y +M R PG +E P + RGP + QR P + QRG P +
Sbjct: 1873 HMEQREFSDSQYNEMIRPPGQFEGSDQPQFMGNRGPFPFGGQRRPPPAQFKGQRGGPQFG 1932
Query: 438 LQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAP-HGQVPPPLNNVPYGSATPPARSGSGQP 496
RG P P F+G RG AP HG P L P+ R GS P
Sbjct: 1933 GPRGPAPGHFGGPR-GPHTNQ-FEGQ-RGPAPNHGPGPRGLLPQPFEE-----RRGSPPP 1984
Query: 497 RGGN 500
R N
Sbjct: 1985 RFAN 1988
Score = 55 (24.4 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 30/123 (24%), Positives = 50/123 (40%)
Query: 30 GMRPPMPGAFP-PFDMMPPPEVME--QKIASQHVEMQK---LATENQRLAATHGTLRQEL 83
G PP P P P P V++ I S AT + + ATH + +
Sbjct: 1288 GSPPPPPPPLPVPESSAVTPSVLKILSSIKSGSTTTAPPPVSATASPSVTATHSSSSKTA 1347
Query: 84 AAAQHELQILHGQIGGMK-SERELQMRNLTEKIAKMEAE-----LKTAEPVKLEF-QKSK 136
+H LQ L G+ + + +E + + + A+ AE + +P+ +F Q SK
Sbjct: 1348 TPLEHILQTLFGKKKSFEPAAKESETAQSSNQKAQAAAEGGMAAVPLLDPIVQQFGQMSK 1407
Query: 137 TEA 139
+A
Sbjct: 1408 DKA 1410
>UNIPROTKB|A4FU28 [details] [associations]
symbol:CTAGE9 "Cutaneous T-cell lymphoma-associated antigen
9" species:9606 "Homo sapiens" [GO:0016021 "integral to membrane"
evidence=IEA] GO:GO:0016021 HOVERGEN:HBG051216 HOGENOM:HOG000112043
OrthoDB:EOG4WSWC5 EMBL:AC005587 EMBL:BC101322 IPI:IPI00740858
RefSeq:NP_001139131.1 UniGene:Hs.632613 ProteinModelPortal:A4FU28
PhosphoSite:A4FU28 PRIDE:A4FU28 Ensembl:ENST00000314099
GeneID:643854 KEGG:hsa:643854 UCSC:uc011ece.2 CTD:643854
GeneCards:GC06M132030 HGNC:HGNC:37275 neXtProt:NX_A4FU28
PharmGKB:PA165617886 OMA:CEGLESS PhylomeDB:A4FU28 GenomeRNAi:643854
NextBio:115484 Bgee:A4FU28 Uniprot:A4FU28
Length = 777
Score = 128 (50.1 bits), Expect = 0.00011, P = 0.00011
Identities = 108/471 (22%), Positives = 183/471 (38%)
Query: 46 PPPEVMEQKI--ASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSE 103
PP +++ I A +V ++ L E + + + ++ L Q ++SE
Sbjct: 310 PPKGALKKLIHAAKLNVSLKSLEGERNHIIIQLSEVDKTKEELTEHIKNLQTQQASLQSE 369
Query: 104 R---ELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDL 160
E + + L +K+ K+ E +KL ++K E +N + EE +++V + +
Sbjct: 370 NIYFESENQKLQQKL-KIMTEFYQENEMKL-YRKLTVE-ENYRIEEEEKLSRVEE---KI 423
Query: 161 QRAHTDVQQIPALLSELES-LRQEYH-HCRGTYEYEKKFYNDHLESLQVMEKNYITMATE 218
A +++ L +LE L + H + + YEK+ +++ L + + E+N + E
Sbjct: 424 SHATEELETYRKLAKDLEEELERTVHFYQKQVISYEKRGHDNWLAA-RTAERNLSDLRKE 482
Query: 219 ----VEKL-RAEL-MNAPNVDRRAADGSYGGATGNSENETSGRPVGQNAYED-GYGVPQG 271
+KL EL D A D S A G + S P+G+ + E + PQ
Sbjct: 483 NAHNKQKLTERELKFELLEKDPNALDVS-NTAFGREHSPCSPSPLGRPSSETRAFPSPQT 541
Query: 272 HGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRG-PGYEA----SKGPGYDA 326
P + + G G +S G P+ RG P Y+ + P
Sbjct: 542 LLEDPLRLSPVLPGGGGRGPSSP------GNPLDHQITNERGEPSYDRLIDPHRAPSDTG 595
Query: 327 SKAPSYDPTKGPSYDPAKGPGY-DPTKGPGYDAQKGSNYDAQRGPNYD-IHRGPSYDPQ- 383
S + + + + P G Y D T P + + SN + GP + S D
Sbjct: 596 SLSSPVEQDRRMMFPPP-GQSYPDSTLPPQREDRFYSNSERLSGPAEPRSFKMTSLDKMD 654
Query: 384 RGLGYDMQRGPNYDMQRGPG---YETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQR 440
R + +M+ N D + G +P + GP P P GP + +
Sbjct: 655 RSMPSEMESSRN-DAKDDLGNLNVPDSSLPAENEATGP---GLIPPPLAPISGPLFPVDT 710
Query: 441 GQGYDMRRAPSYDPSR-GTGFDGAPRGAAPHGQVPPPLNNVPYGSAT--PP 488
+G MRR P + P GT F GA RG P P P + P+ PP
Sbjct: 711 -RGPFMRRGPPFPPPPPGTMF-GASRGYFPPRDFPGP-PHAPFAMRNIYPP 758
>UNIPROTKB|F1NGH5 [details] [associations]
symbol:Gga.41084 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0006915 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 OMA:PNRMCAD GeneTree:ENSGT00530000063844
EMBL:AADN02019222 EMBL:AADN02019223 IPI:IPI00577866
Ensembl:ENSGALT00000009066 ArrayExpress:F1NGH5 Uniprot:F1NGH5
Length = 2287
Score = 129 (50.5 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 86/304 (28%), Positives = 116/304 (38%)
Query: 228 NAPNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVG-A 286
+ PN + D A G+ E E R + YE+ PQ H + + G
Sbjct: 1731 STPNDSQSLQDMHQENAGGHYEPE---RGLSSLQYEEQRN-PQPHQFVEQTESTSIQGEG 1786
Query: 287 GP-------NTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKG-P 338
GP N + + G P ++ P GP GP + AP + G P
Sbjct: 1787 GPLPQHFEENRLPFSLPGQKGGPPQPPIHNAPGGP-----HGPNF-RGPAPQFSEEHGSP 1840
Query: 339 SYDPAKGPG---YDPTKGPG---YDAQKGSN-YDAQRGP--NYDIHRG--PSYDPQRGLG 387
+ D +GP + P KGP + +Q GS + RGP +Y + RG PS
Sbjct: 1841 NSDGQRGPAPGRFGPQKGPIPSLFSSQHGSPLFGDNRGPAPSYGVPRGMSPSQFEDHMEP 1900
Query: 388 YDMQR---GPNY-DMQRGPG-YETQRVPGYDVQRGPV-YEAQRAP---SYIPQRG-PGYD 437
+ QR Y +M R PG +E P + RGP + QR P + QRG P +
Sbjct: 1901 HMEQREFSDSQYNEMIRPPGQFEGSDQPQFMGNRGPFPFGGQRRPPPAQFKGQRGGPQFG 1960
Query: 438 LQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAP-HGQVPPPLNNVPYGSATPPARSGSGQP 496
RG P P F+G RG AP HG P L P+ R GS P
Sbjct: 1961 GPRGPAPGHFGGPR-GPHTNQ-FEGQ-RGPAPNHGPGPRGLLPQPFEE-----RRGSPPP 2012
Query: 497 RGGN 500
R N
Sbjct: 2013 RFAN 2016
Score = 55 (24.4 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 30/123 (24%), Positives = 50/123 (40%)
Query: 30 GMRPPMPGAFP-PFDMMPPPEVME--QKIASQHVEMQK---LATENQRLAATHGTLRQEL 83
G PP P P P P V++ I S AT + + ATH + +
Sbjct: 1288 GSPPPPPPPLPVPESSAVTPSVLKILSSIKSGSTTTAPPPVSATASPSVTATHSSSSKTA 1347
Query: 84 AAAQHELQILHGQIGGMK-SERELQMRNLTEKIAKMEAE-----LKTAEPVKLEF-QKSK 136
+H LQ L G+ + + +E + + + A+ AE + +P+ +F Q SK
Sbjct: 1348 TPLEHILQTLFGKKKSFEPAAKESETAQSSNQKAQAAAEGGMAAVPLLDPIVQQFGQMSK 1407
Query: 137 TEA 139
+A
Sbjct: 1408 DKA 1410
>UNIPROTKB|F1SN69 [details] [associations]
symbol:F1SN69 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005581 "collagen" evidence=IEA] [GO:0005201
"extracellular matrix structural constituent" evidence=IEA]
InterPro:IPR000885 Pfam:PF01410 ProDom:PD002078 PROSITE:PS51461
SMART:SM00038 InterPro:IPR008985 SUPFAM:SSF49899 GO:GO:0005581
InterPro:IPR008160 Pfam:PF01391 InterPro:IPR001791 GO:GO:0005201
SMART:SM00210 GeneTree:ENSGT00700000104301 OMA:YSYPDRL
EMBL:CU618340 EMBL:CU606988 EMBL:CU861519
Ensembl:ENSSSCT00000006033 Uniprot:F1SN69
Length = 1869
Score = 132 (51.5 bits), Expect = 0.00012, P = 0.00012
Identities = 74/250 (29%), Positives = 98/250 (39%)
Query: 267 GVPQGHGPPPSATTAGVVGA-GPNTSTSAYAATQSGTPMRAAYDIPRG-------PGYEA 318
GVP GPP + G G+ GP + A G P A YD +G PG +
Sbjct: 1274 GVPGDPGPPGTPGPKGSRGSLGPTGAPGRMGA--QGEPGLAGYDGHKGIMGPLGPPGPKG 1331
Query: 319 SKGP-GYDA-SKAPSYDP-TKGPSYDPAKGPGYDPTKGPGYDAQKG-----SNYDAQRGP 370
KG G D ++ P P +GP D +G +P PGY Q+G N Q P
Sbjct: 1332 EKGEQGEDGKAEGPPGPPGDRGPVGD--RGDRGEPGD-PGYPGQEGVQGLRGNPGQQGQP 1388
Query: 371 NYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYE-TQRVPGYDVQRGPVYEAQRAPSYI 429
+ RG P+ G + +G PG TQ +PG RG V ++ P +
Sbjct: 1389 GHPGPRGRP-GPKGSKGEEGPKGKQ-GKAGAPGRRGTQGLPGLPGPRGVV--GRQGPEGV 1444
Query: 430 --PQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAA-PHGQVPPPL---NNVPYG 483
P PG D Q GQ + P G G P A P Q PP + +P G
Sbjct: 1445 AGPDGLPGLDGQAGQQGEQGDDGDPGPLGPAGKRGNPGVAGLPGAQGPPGFKGESGLP-G 1503
Query: 484 SATPPARSGS 493
PP + G+
Sbjct: 1504 QLGPPGKRGT 1513
>UNIPROTKB|P05997 [details] [associations]
symbol:COL5A2 "Collagen alpha-2(V) chain" species:9606
"Homo sapiens" [GO:0005201 "extracellular matrix structural
constituent" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=IEA] [GO:0046332 "SMAD binding" evidence=IEA] [GO:0071230
"cellular response to amino acid stimulus" evidence=IEA]
[GO:0030199 "collagen fibril organization" evidence=ISS;IMP]
[GO:0043588 "skin development" evidence=ISS;IMP] [GO:0031012
"extracellular matrix" evidence=NAS] [GO:0003674
"molecular_function" evidence=ND] [GO:0048592 "eye morphogenesis"
evidence=IMP] [GO:0005588 "collagen type V" evidence=IMP]
[GO:0005576 "extracellular region" evidence=TAS] [GO:0005788
"endoplasmic reticulum lumen" evidence=TAS] [GO:0007411 "axon
guidance" evidence=TAS] [GO:0030198 "extracellular matrix
organization" evidence=TAS] InterPro:IPR000885 InterPro:IPR001007
Pfam:PF00093 Pfam:PF01410 ProDom:PD002078 PROSITE:PS01208
PROSITE:PS50184 PROSITE:PS51461 SMART:SM00038 SMART:SM00214
Reactome:REACT_118779 Reactome:REACT_111045 Reactome:REACT_111102
GO:GO:0007411 GO:GO:0043588 GO:GO:0046872 GO:GO:0030199
GO:GO:0005788 GO:GO:0001501 InterPro:IPR008160 Pfam:PF01391
eggNOG:NOG12793 GO:GO:0071230 GO:GO:0005201 GO:GO:0048592
HOVERGEN:HBG004933 KO:K06236 MIM:130000 Orphanet:90309
EMBL:AY016295 PDB:1A9A PDBsum:1A9A MIM:130010 Orphanet:90318
GO:GO:0005588 EMBL:Y14690 EMBL:AB209045 EMBL:AC064833 EMBL:AC133106
EMBL:J04478 EMBL:AY016288 EMBL:AY016287 EMBL:AY016289 EMBL:AY016290
EMBL:AY016291 EMBL:AY016292 EMBL:AY016293 EMBL:AY016294 EMBL:M58529
EMBL:X04758 EMBL:BC043613 EMBL:M10956 EMBL:M11135 EMBL:M11718
EMBL:J03051 IPI:IPI00739099 PIR:A31427 RefSeq:NP_000384.2
UniGene:Hs.445827 ProteinModelPortal:P05997 SMR:P05997
STRING:P05997 PhosphoSite:P05997 DMDM:143811378 PaxDb:P05997
PRIDE:P05997 Ensembl:ENST00000374866 GeneID:1290 KEGG:hsa:1290
UCSC:uc002uqk.3 CTD:1290 GeneCards:GC02M189861 HGNC:HGNC:2210
MIM:120190 neXtProt:NX_P05997 PharmGKB:PA26725 InParanoid:P05997
OMA:PDHKPVW OrthoDB:EOG4K0QMS ChiTaRS:COL5A2 GenomeRNAi:1290
NextBio:5223 PMAP-CutDB:P05997 ArrayExpress:P05997 Bgee:P05997
Genevestigator:P05997 GermOnline:ENSG00000204262 Uniprot:P05997
Length = 1499
Score = 131 (51.2 bits), Expect = 0.00012, P = 0.00012
Identities = 87/295 (29%), Positives = 109/295 (36%)
Query: 232 VDRRAADGSYG--GATGNSENETSGRPVGQNAYEDGYGVPQGH-GPPPSATTAGVVGAGP 288
+ + A+G+ G GA G P G E G P+G GPP S G G
Sbjct: 782 IGEKGAEGTAGNDGARGLPGPLGPPGPAGPTG-EKGEPGPRGLVGPPGSRGNPGSRGENG 840
Query: 289 NTSTSAYAATQS--GTP-MRAAYDIPRGPGYEASKGP-GYDASKAPSYDPTKGPSYDPAK 344
T +A Q G P ++ P G S GP G S P + P P +
Sbjct: 841 PTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGP-HGPNGVPGLKGGR 899
Query: 345 GPGYDP--TKGPGYDAQKGSNYDAQR-GPNYDIHRGPSYDPQRGLGYDM-------QRGP 394
G P T PG + G A GP + P + GL D RGP
Sbjct: 900 GTQGPPGATGFPGSAGRVGPPGPAGAPGPAGPLGE-PGKEGPPGLRGDPGSHGRVGDRGP 958
Query: 395 NYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIP-QRG-PGYDLQRGQ-GYDMRRAPS 451
GPG + PG D Q GP + P+ QRG G QRG+ G P+
Sbjct: 959 A-GPPGGPGDKGD--PGEDGQPGP--DGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPA 1013
Query: 452 YDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGS-GQP-RGGNPARR 504
P + G GA P G V PP +N P G P +G+ G P R G R
Sbjct: 1014 GTPGK-VGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGER 1067
>UNIPROTKB|J9NW09 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 GO:GO:0003677 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 EMBL:AAEX03003616 EMBL:AAEX03003617
Ensembl:ENSCAFT00000050029 Uniprot:J9NW09
Length = 1789
Score = 144 (55.7 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 72/276 (26%), Positives = 99/276 (35%)
Query: 218 EVEKLRAELMNAPNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPP- 276
+ EK + + N+ A G G G++ + G + G G P
Sbjct: 1476 DAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSV 1535
Query: 277 -SATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPT 335
S T G G P+ ++ A + +P A P PG PG + PS
Sbjct: 1536 GSGMTPGAAGFSPSAASDASGFSPGYSP--AWSPTPGSPG-----SPGPSSPYIPSPGGA 1588
Query: 336 KGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPN 395
PSY P P Y+P GY Q S Y + P+Y PSY P Y P+
Sbjct: 1589 MSPSYSPTS-PAYEPRSPGGYTPQSPS-Y-SPTSPSYS-PTSPSYSPTSP-NYS-PTSPS 1642
Query: 396 YDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPS 455
Y P Y P Y P Y + +PSY P P Y Y +PSY P+
Sbjct: 1643 YS-PTSPSYSPTS-PSYS-PTSPSY-SPTSPSYSPT-SPSYS-PTSPSYSPT-SPSYSPT 1695
Query: 456 RGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARS 491
+ +P +P P + P S T P+ S
Sbjct: 1696 SPSYSPTSP-SYSPTSPSYSPTS--PSYSPTSPSYS 1728
Score = 37 (18.1 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 52 EQKIASQHVEMQKLAT 67
E +A + VE Q LAT
Sbjct: 893 EDGLAGESVEFQNLAT 908
>WB|WBGene00000694 [details] [associations]
symbol:col-120 species:6239 "Caenorhabditis elegans"
[GO:0042302 "structural constituent of cuticle" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] InterPro:IPR002486
Pfam:PF01484 SMART:SM01088 GO:GO:0042302 HOGENOM:HOG000085656
GeneTree:ENSGT00610000086159 EMBL:AL032632 PIR:T26465
RefSeq:NP_501617.1 ProteinModelPortal:Q9XWR2 DIP:DIP-26936N
IntAct:Q9XWR2 MINT:MINT-1070946 STRING:Q9XWR2
EnsemblMetazoa:Y11D7A.11 GeneID:177748 KEGG:cel:CELE_Y11D7A.11
UCSC:Y11D7A.11 CTD:177748 WormBase:Y11D7A.11 eggNOG:NOG265281
InParanoid:Q9XWR2 OMA:HWELLED NextBio:898216 Uniprot:Q9XWR2
Length = 313
Score = 122 (48.0 bits), Expect = 0.00012, P = 0.00012
Identities = 77/268 (28%), Positives = 97/268 (36%)
Query: 247 NSENE-TSGRPVGQNAY--EDGYGV--PQ---GHGPPPSATTAGVVGAGPNTSTSAYAAT 298
N EN S + VG + GYG P G P PS A A ++S+S+ +
Sbjct: 64 NLENMYESTKAVGSGPVKRQAGYGASSPSRASGSHPAPSPYDA----ASTSSSSSSDSCC 119
Query: 299 QSGTPMRAAYDIPRGPGYEASKGP----GYDASKAPSYDPTKGPSYD---PAKGPGYDPT 351
G + P PG + GP G D + G + PA PG P
Sbjct: 120 SCGIGLAGPAGFPGRPGRDGIDGPAGKPGRDGQDLDGESSSDGSQIELDCPAGPPG--PP 177
Query: 352 KGPGYDAQKGS-NYDAQRGPNYDIHRGPSYDPQRGL-GYDMQRGPNYDMQRGPGYETQRV 409
PG G D G N R P +RG G D + G D PG +
Sbjct: 178 GNPGPQGNSGRPGMDGMPGRNGRCGR-PGEQGERGPNGEDGRPGRRGD-DGMPG-TVNEI 234
Query: 410 PGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQ-GYDMRRAPSYDPSRGTGFDGAPRGAA 468
PG Q GP + AP +GP RG G + P+ P GFDGAP G
Sbjct: 235 PG---QAGPP-GLRGAPGATGSQGP-----RGNDGRPGNKGPAGPPG-DQGFDGAPGGPG 284
Query: 469 PHGQ--VPPPLNNVPYGSATPPARSGSG 494
G+ PL S PP R+ G
Sbjct: 285 ADGEPGAQGPLGAKGECSHCPPPRTAPG 312
>UNIPROTKB|F1NCR0 [details] [associations]
symbol:COL1A2 "Collagen alpha-2(I) chain" species:9031
"Gallus gallus" [GO:0005201 "extracellular matrix structural
constituent" evidence=IEA] [GO:0001501 "skeletal system
development" evidence=IEA] [GO:0001568 "blood vessel development"
evidence=IEA] [GO:0005584 "collagen type I" evidence=IEA]
[GO:0005615 "extracellular space" evidence=IEA] [GO:0007179
"transforming growth factor beta receptor signaling pathway"
evidence=IEA] [GO:0007266 "Rho protein signal transduction"
evidence=IEA] [GO:0008217 "regulation of blood pressure"
evidence=IEA] [GO:0030199 "collagen fibril organization"
evidence=IEA] [GO:0030674 "protein binding, bridging" evidence=IEA]
[GO:0042802 "identical protein binding" evidence=IEA] [GO:0043589
"skin morphogenesis" evidence=IEA] [GO:0046332 "SMAD binding"
evidence=IEA] [GO:0048407 "platelet-derived growth factor binding"
evidence=IEA] [GO:0070208 "protein heterotrimerization"
evidence=IEA] [GO:0071230 "cellular response to amino acid
stimulus" evidence=IEA] InterPro:IPR000885 Pfam:PF01410
ProDom:PD002078 PROSITE:PS51461 SMART:SM00038 GO:GO:0005615
GO:GO:0030199 GO:GO:0007179 GO:GO:0007266 GO:GO:0070208
InterPro:IPR008160 Pfam:PF01391 GO:GO:0071230 GO:GO:0005201
GeneTree:ENSGT00660000095287 GO:GO:0005584 EMBL:AADN02000724
IPI:IPI00821202 Ensembl:ENSGALT00000015706 ArrayExpress:F1NCR0
Uniprot:F1NCR0
Length = 1318
Score = 130 (50.8 bits), Expect = 0.00013, P = 0.00013
Identities = 81/262 (30%), Positives = 97/262 (37%)
Query: 256 PVGQNAYEDGYGVPQGH----GPPPSATTAGVVGA-GPNTSTSAYAATQSGTP-MRAAYD 309
PVG+ E G P G GP A AG G GP A G P R
Sbjct: 781 PVGRTG-EQGIAGPPGFAGEKGPSGEAGAAGPPGTPGPQGILGAPGIL--GLPGSRGERG 837
Query: 310 IPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGP-GYDAQKGSNYDAQR 368
+P G GP S P +GPS P PG + G G D G++ R
Sbjct: 838 LPGIAGATGEPGP-LGVSGPPG---ARGPS-GPVGSPGPNGAPGEAGRDGNPGNDGPPGR 892
Query: 369 --GPNYDIHRG-PSYD-PQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQR 424
P + RG P P LG GP+ Q GP + PG GPV
Sbjct: 893 DGAPGFKGERGAPGNPGPSGALGAP---GPHG--QVGPSGK----PGNRGDPGPVGPVGP 943
Query: 425 APSYIPQ--RGP-GYDLQRGQGYDM--RRAPSYDPSRG-TGFDGAPRGAAPHGQVPPPLN 478
A ++ P+ GP G ++G+ D R P +G G G P A HG PP N
Sbjct: 944 AGAFGPRGLAGPQGPRGEKGEPGDKGHRGLPGL---KGHNGLQGLPGLAGQHGDQGPPGN 1000
Query: 479 NVPYGSATPPARSGSGQPRGGN 500
N P G PP SG G N
Sbjct: 1001 NGPAGPRGPPGPSGPPGKDGRN 1022
>UNIPROTKB|F6UV28 [details] [associations]
symbol:TPR "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006606 "protein import into nucleus"
evidence=IEA] [GO:0006434 "seryl-tRNA aminoacylation" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005643 "nuclear pore"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004828
"serine-tRNA ligase activity" evidence=IEA] InterPro:IPR012929
InterPro:IPR015866 Pfam:PF07926 GO:GO:0005524 GO:GO:0005737
GO:GO:0005643 GO:GO:0006606 InterPro:IPR009053 SUPFAM:SSF46579
GeneTree:ENSGT00700000104019 GO:GO:0004828 GO:GO:0006434
Gene3D:1.10.287.40 OMA:RFIRREK EMBL:AAEX03005165
Ensembl:ENSCAFT00000021777 Uniprot:F6UV28
Length = 2127
Score = 126 (49.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 41/186 (22%), Positives = 87/186 (46%)
Query: 48 PEVME-QKIASQ---HVE-MQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS 102
P+ E +K+ S+ H + +Q+L E RL A L Q+ +Q L + +++
Sbjct: 1113 PDTEEYRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRT 1172
Query: 103 ERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR 162
E+E ++L KI ++ ++KT VK ++ KT+ + L +++++ Q + D Q
Sbjct: 1173 EKETIQKDLDAKIIDIQEKVKTITQVKKIGRRYKTQYEELKAQQDKVMETSAQSSGDHQE 1232
Query: 163 AHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKL 222
H VQ++ L L + E +K ++ + +++ + + E+ +L
Sbjct: 1233 QHVSVQEMQELKETLNQAETKAKSLESQVENLQKTLSEKEAEARNLQEQTVQLQCELSRL 1292
Query: 223 RAELMN 228
R +L +
Sbjct: 1293 RQDLQD 1298
Score = 57 (25.1 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 17/54 (31%), Positives = 22/54 (40%)
Query: 243 GATGNSENETSGRPVGQNAYE--DGYGVPQGHGPPPSATTAGVVGAGPNTSTSA 294
G G NE +G G + YE D G G G P T +G G + +A
Sbjct: 1746 GDEGEDSNEGTGSADGNDGYEADDAEG---GDGTDPGTETEESMGGGESNQRAA 1796
>UNIPROTKB|P02467 [details] [associations]
symbol:COL1A2 "Collagen alpha-2(I) chain" species:9031
"Gallus gallus" [GO:0005201 "extracellular matrix structural
constituent" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005583 "fibrillar collagen" evidence=IDA]
InterPro:IPR000885 Pfam:PF01410 ProDom:PD002078 PROSITE:PS51461
SMART:SM00038 GO:GO:0046872 InterPro:IPR008160 Pfam:PF01391
eggNOG:NOG12793 GO:GO:0005201 HOVERGEN:HBG004933 EMBL:M25963
EMBL:M25956 EMBL:M25959 EMBL:M25961 EMBL:M25962 EMBL:M25965
EMBL:M25964 EMBL:M25984 EMBL:M25957 EMBL:M25966 EMBL:M25967
EMBL:M25969 EMBL:M25970 EMBL:M25971 EMBL:M25972 EMBL:M25973
EMBL:M25974 EMBL:M25976 EMBL:M25977 EMBL:M25978 EMBL:M25979
EMBL:M25980 EMBL:M25981 EMBL:M25982 EMBL:M25983 EMBL:J00826
EMBL:J00821 EMBL:K00792 EMBL:J00830 EMBL:J00829 EMBL:J00837
EMBL:J00812 EMBL:J00811 EMBL:J00814 EMBL:J00815 EMBL:X02657
EMBL:K00794 EMBL:V00390 EMBL:M17608 EMBL:M10581 EMBL:M10540
EMBL:J00828 EMBL:J00827 EMBL:J00832 EMBL:J00831 EMBL:J00833
EMBL:J00822 IPI:IPI00914483 PIR:I50173 PIR:I50206 PIR:S10847
UniGene:Gga.5097 STRING:P02467 PRIDE:P02467 InParanoid:P02467
PMAP-CutDB:P02467 GO:GO:0005583 Uniprot:P02467
Length = 1362
Score = 130 (50.8 bits), Expect = 0.00014, P = 0.00014
Identities = 81/262 (30%), Positives = 97/262 (37%)
Query: 256 PVGQNAYEDGYGVPQGH----GPPPSATTAGVVGA-GPNTSTSAYAATQSGTP-MRAAYD 309
PVG+ E G P G GP A AG G GP A G P R
Sbjct: 825 PVGRTG-EQGIAGPPGFAGEKGPSGEAGAAGPPGTPGPQGILGAPGIL--GLPGSRGERG 881
Query: 310 IPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGP-GYDAQKGSNYDAQR 368
+P G GP S P +GPS P PG + G G D G++ R
Sbjct: 882 LPGIAGATGEPGP-LGVSGPPG---ARGPS-GPVGSPGPNGAPGEAGRDGNPGNDGPPGR 936
Query: 369 --GPNYDIHRG-PSYD-PQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQR 424
P + RG P P LG GP+ Q GP + PG GPV
Sbjct: 937 DGAPGFKGERGAPGNPGPSGALGAP---GPHG--QVGPSGK----PGNRGDPGPVGPVGP 987
Query: 425 APSYIPQ--RGP-GYDLQRGQGYDM--RRAPSYDPSRG-TGFDGAPRGAAPHGQVPPPLN 478
A ++ P+ GP G ++G+ D R P +G G G P A HG PP N
Sbjct: 988 AGAFGPRGLAGPQGPRGEKGEPGDKGHRGLPGL---KGHNGLQGLPGLAGQHGDQGPPGN 1044
Query: 479 NVPYGSATPPARSGSGQPRGGN 500
N P G PP SG G N
Sbjct: 1045 NGPAGPRGPPGPSGPPGKDGRN 1066
>UNIPROTKB|F1P0H9 [details] [associations]
symbol:COL1A2 "Collagen alpha-2(I) chain" species:9031
"Gallus gallus" [GO:0005201 "extracellular matrix structural
constituent" evidence=IEA] [GO:0001501 "skeletal system
development" evidence=IEA] [GO:0001568 "blood vessel development"
evidence=IEA] [GO:0005584 "collagen type I" evidence=IEA]
[GO:0005615 "extracellular space" evidence=IEA] [GO:0007179
"transforming growth factor beta receptor signaling pathway"
evidence=IEA] [GO:0007266 "Rho protein signal transduction"
evidence=IEA] [GO:0008217 "regulation of blood pressure"
evidence=IEA] [GO:0030199 "collagen fibril organization"
evidence=IEA] [GO:0030674 "protein binding, bridging" evidence=IEA]
[GO:0042802 "identical protein binding" evidence=IEA] [GO:0043589
"skin morphogenesis" evidence=IEA] [GO:0046332 "SMAD binding"
evidence=IEA] [GO:0048407 "platelet-derived growth factor binding"
evidence=IEA] [GO:0070208 "protein heterotrimerization"
evidence=IEA] [GO:0071230 "cellular response to amino acid
stimulus" evidence=IEA] InterPro:IPR000885 Pfam:PF01410
ProDom:PD002078 PROSITE:PS51461 SMART:SM00038 GO:GO:0005615
GO:GO:0030199 GO:GO:0007179 GO:GO:0007266 GO:GO:0070208
InterPro:IPR008160 Pfam:PF01391 GO:GO:0071230 GO:GO:0005201
GeneTree:ENSGT00660000095287 KO:K06236 GO:GO:0005584 CTD:1278
IPI:IPI00914483 UniGene:Gga.5097 EMBL:AADN02000724
RefSeq:NP_001073182.2 PRIDE:F1P0H9 Ensembl:ENSGALT00000015703
GeneID:396243 KEGG:gga:396243 OMA:IGMPGAR NextBio:20816295
ArrayExpress:F1P0H9 Uniprot:F1P0H9
Length = 1363
Score = 130 (50.8 bits), Expect = 0.00014, P = 0.00014
Identities = 81/262 (30%), Positives = 97/262 (37%)
Query: 256 PVGQNAYEDGYGVPQGH----GPPPSATTAGVVGA-GPNTSTSAYAATQSGTP-MRAAYD 309
PVG+ E G P G GP A AG G GP A G P R
Sbjct: 826 PVGRTG-EQGIAGPPGFAGEKGPSGEAGAAGPPGTPGPQGILGAPGIL--GLPGSRGERG 882
Query: 310 IPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGP-GYDAQKGSNYDAQR 368
+P G GP S P +GPS P PG + G G D G++ R
Sbjct: 883 LPGIAGATGEPGP-LGVSGPPG---ARGPS-GPVGSPGPNGAPGEAGRDGNPGNDGPPGR 937
Query: 369 --GPNYDIHRG-PSYD-PQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQR 424
P + RG P P LG GP+ Q GP + PG GPV
Sbjct: 938 DGAPGFKGERGAPGNPGPSGALGAP---GPHG--QVGPSGK----PGNRGDPGPVGPVGP 988
Query: 425 APSYIPQ--RGP-GYDLQRGQGYDM--RRAPSYDPSRG-TGFDGAPRGAAPHGQVPPPLN 478
A ++ P+ GP G ++G+ D R P +G G G P A HG PP N
Sbjct: 989 AGAFGPRGLAGPQGPRGEKGEPGDKGHRGLPGL---KGHNGLQGLPGLAGQHGDQGPPGN 1045
Query: 479 NVPYGSATPPARSGSGQPRGGN 500
N P G PP SG G N
Sbjct: 1046 NGPAGPRGPPGPSGPPGKDGRN 1067
>UNIPROTKB|F1SNP1 [details] [associations]
symbol:COL4A4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0032836 "glomerular basement membrane development"
evidence=IEA] [GO:0005605 "basal lamina" evidence=IEA] [GO:0005587
"collagen type IV" evidence=IEA] [GO:0005201 "extracellular matrix
structural constituent" evidence=IEA] InterPro:IPR001442
Pfam:PF01413 PROSITE:PS51403 SMART:SM00111 InterPro:IPR016187
SUPFAM:SSF56436 GO:GO:0005605 InterPro:IPR008160 Pfam:PF01391
GO:GO:0005201 GO:GO:0005587 Gene3D:2.170.240.10
GeneTree:ENSGT00690000101772 GO:GO:0032836 OMA:FRGDMGD
EMBL:CU466451 EMBL:FP690341 Ensembl:ENSSSCT00000017688
Uniprot:F1SNP1
Length = 1711
Score = 131 (51.2 bits), Expect = 0.00014, P = 0.00014
Identities = 76/260 (29%), Positives = 89/260 (34%)
Query: 254 GRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRG 313
G P G E G+P GPP G G G P G
Sbjct: 1207 GVP-GPRGPEGSMGLPGQRGPP-GPECKGEPGPDGRRGEDGLPGPP-GPPGHKGDMGEAG 1263
Query: 314 -PGYEASKG-PGYDASKAPSYDPTKGPSYDPAKG--PGYDPTKGPGYDAQKGSNYDAQRG 369
PG KG PG + PS +G + DP G G P PG G N QRG
Sbjct: 1264 CPGAPGPKGFPGRRGTPGPSLIGFRGDTGDPGFGGEKGSSPIGPPGSPGSPGMN--GQRG 1321
Query: 370 PNYDIHRG-PSYDPQRGL-GYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQRA-- 425
P D G P +RGL G +G D R +PG+ +GP RA
Sbjct: 1322 PPGDPALGYPGPPGKRGLFGSPGSKGLRGDPGRPGATGPAGMPGFPGLKGPKGREGRAGF 1381
Query: 426 PSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSA 485
P +P PG+ + G R P P G GAP G + PP G
Sbjct: 1382 PG-VPGP-PGHSCESGA--PGRPGPPGLPG-APGSPGAPGWKGQRGDMGPPGPAGMKGVP 1436
Query: 486 TPPARSGSGQPRG--GNPAR 503
P R G P G G P R
Sbjct: 1437 GVPGRPGPDGPPGPPGVPGR 1456
>TAIR|locus:2079502 [details] [associations]
symbol:RS31 "arginine/serine-rich splicing factor 31"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IDA;RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0043687 "post-translational
protein modification" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0005681 "spliceosomal complex" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0000398
EMBL:AL138642 HOGENOM:HOG000276234 KO:K12893 EMBL:X99435
EMBL:AF439831 EMBL:AY125565 IPI:IPI00530595 PIR:T47978 PIR:T51304
RefSeq:NP_567120.1 UniGene:At.24231 ProteinModelPortal:P92964
SMR:P92964 IntAct:P92964 STRING:P92964 PaxDb:P92964 PRIDE:P92964
EnsemblPlants:AT3G61860.1 GeneID:825359 KEGG:ath:AT3G61860
TAIR:At3g61860 eggNOG:NOG277933 InParanoid:P92964 OMA:FEYETRQ
PhylomeDB:P92964 ProtClustDB:CLSN2917489 Genevestigator:P92964
GermOnline:AT3G61860 Uniprot:P92964
Length = 264
Score = 120 (47.3 bits), Expect = 0.00014, P = 0.00014
Identities = 30/88 (34%), Positives = 41/88 (46%)
Query: 302 TPMRAAYDIPR---GPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPG-YDPTKGPGYD 357
+P R+ + R P Y PG +P Y + P YD KGP Y+ + P Y
Sbjct: 177 SPRRSLSPVYRRRPSPDYGRRPSPGQGRRPSPDYGRARSPEYDRYKGPAAYERRRSPDY- 235
Query: 358 AQKGSNYDAQRGPNYDIHRGPSYDPQRG 385
++ S+Y QR P YD +R S P RG
Sbjct: 236 GRRSSDYGRQRSPGYDRYRSRSPVP-RG 262
>UNIPROTKB|F1KQQ4 [details] [associations]
symbol:F1KQQ4 "Collagen alpha-1(IV) chain" species:6253
"Ascaris suum" [GO:0031012 "extracellular matrix" evidence=IDA]
InterPro:IPR001442 Pfam:PF01413 PROSITE:PS51403 SMART:SM00111
InterPro:IPR016187 SUPFAM:SSF56436 GO:GO:0005581 InterPro:IPR008160
Pfam:PF01391 GO:GO:0005201 Gene3D:2.170.240.10 EMBL:JI164326
Uniprot:F1KQQ4
Length = 1759
Score = 131 (51.2 bits), Expect = 0.00014, P = 0.00014
Identities = 88/302 (29%), Positives = 111/302 (36%)
Query: 226 LMNAPNVDRRAADGSYGGATGNSE-NETSGRP-----VGQNAYEDGYGVPQGHGPPPSAT 279
L P D + G G++ N +G P G+ + +G P GP +
Sbjct: 1147 LQGPPGFDGLQGQKGHRGIPGDAGFNGRAGLPGLPGIKGERGQDGQHGYPGEPGPVGAHG 1206
Query: 280 TAGVVGAGPNTSTSAYAATQSGTPMR----AAYDIPRGPGYEASKG----PGYDASKA-P 330
+G+ GA P + G P + A P PG E G G D P
Sbjct: 1207 ESGLTGA-PGLQGEPGLPGRMGLPGQPGELGAPGFPGAPGLEGIPGIRGERGDDGLPGLP 1265
Query: 331 SYD--PTKGPSYDPAKGPGYDPTKG-PGYDAQKGSNYDAQRG-PNYDIHRG----PSYDP 382
D P +GP D A PG D G PG Q+G D G P RG P Y
Sbjct: 1266 GIDGIPIQGPEGD-AGYPGRDGNDGLPGLPGQRGD--DGLPGLPGLIGERGDDGLPGYPG 1322
Query: 383 QRGL-GYDMQRGPNYDMQRG-PGYE-TQRVPGYDVQRGPVYEAQRAPSYIPQRG-PGYDL 438
+RGL G D +RGP D RG PG PG +RG P + + G PGY
Sbjct: 1323 ERGLRGIDGKRGP--DGARGLPGPPGLDGYPGAPGERG----MDGLPGFPGKDGIPGYPG 1376
Query: 439 QRGQGYDMRRAPSYDPSRGT-GFDGAPRGAAPHG-QVPPPLNNVPYGSATPPARSGSGQP 496
+RG+ P RG G G P A G + L +P G P G P
Sbjct: 1377 ERGEV----GLPGLPGMRGEDGLPGLPGLAGQKGARGDDGLPGLP-GLPGPVGARGRPGP 1431
Query: 497 RG 498
G
Sbjct: 1432 PG 1433
>UNIPROTKB|F1LNY9 [details] [associations]
symbol:Col2a1 "Collagen alpha-1(II) chain" species:10116
"Rattus norvegicus" [GO:0005201 "extracellular matrix structural
constituent" evidence=IEA] [GO:0005581 "collagen" evidence=IEA]
InterPro:IPR000885 InterPro:IPR001007 Pfam:PF00093 Pfam:PF01410
ProDom:PD002078 PROSITE:PS01208 PROSITE:PS50184 PROSITE:PS51461
SMART:SM00038 SMART:SM00214 RGD:2375 GO:GO:0005581
InterPro:IPR008160 Pfam:PF01391 GO:GO:0005201 IPI:IPI00558825
Ensembl:ENSRNOT00000049994 ArrayExpress:F1LNY9 Uniprot:F1LNY9
Length = 1441
Score = 130 (50.8 bits), Expect = 0.00014, P = 0.00014
Identities = 82/285 (28%), Positives = 106/285 (37%)
Query: 230 PNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGA-GP 288
P R GA GN P G G G P G P + AG GA GP
Sbjct: 283 PGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFP---GAPGAKGEAGPTGARGP 339
Query: 289 NTSTSAYAATQS-GTPMRAAYDIPRG----PGYEASKG-PGYDASKAPSYDPTKGPSYDP 342
+ + + G+P A G PG + S G PG + AP + +GP P
Sbjct: 340 EGAQGSRGEPGNPGSPGPAGASGNPGTDGIPGAKGSAGAPGI--AGAPGFPGPRGP---P 394
Query: 343 AKGP-GYDPTKGP-GYDAQKG-SNYDAQRGPNYDIH-RGPSYDPQRGLGYDMQRGPNYDM 398
GP G GP G + G + + ++GP + GP P G + +RG +
Sbjct: 395 --GPQGATGPLGPKGQTGEPGIAGFKGEQGPKGETGPAGPQGAPGPA-GEEGKRGARGEP 451
Query: 399 Q-RGP-GYETQR-VPGYDVQRG-PVYEAQRAPSYIP-QRGP-GYDLQRGQGYDMRRAPSY 452
GP G +R PG RG P + P P +RGP G +G D R
Sbjct: 452 GGAGPIGPPGERGAPG---NRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEP 508
Query: 453 DPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGS-GQP 496
G G P A P G+V P G PP G+ GQP
Sbjct: 509 GLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQP 553
Score = 126 (49.4 bits), Expect = 0.00039, P = 0.00039
Identities = 89/301 (29%), Positives = 117/301 (38%)
Query: 235 RAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPP-PSATTA--GVVGA-GPNT 290
R A G G G+ + P G + G G+ GPP P+ G VG GP+
Sbjct: 709 RGAAG-IAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPSG 767
Query: 291 STSAYAAT----QSGTPMRAAYDIPRGP-GYEASKGP-GYDASKAPSYDP-TKGPSYDPA 343
ST A A ++G P A + P G G +KG G K + P +GPS P
Sbjct: 768 STGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGDQGEAGQKGDAGAPGPQGPSGAPG 827
Query: 344 -KGP-GYDPTKGP-GYDAQKGSN-YDAQRG----PNYDIHRGPSYDPQRGLGYDMQRGPN 395
+GP G KG G G+ + G P + + GP+ P G D +G
Sbjct: 828 PQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPA-GPPGPAGKDGPKGAR 886
Query: 396 YDM----QRG-PGYETQR-VPGYDVQRG---PV-YEAQRAPSYIP-QRG-PGYDLQRGQ- 442
D + G PG + PG + G P + P + QRG G QRG+
Sbjct: 887 GDTGAPGRAGDPGLQGPAGAPGEKGEPGDDGPSGSDGPPGPQGLAGQRGIVGLPGQRGER 946
Query: 443 GYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRGGNPA 502
G+ PS +P + G GA P G V PP P G P R GS G P
Sbjct: 947 GFPGLPGPSGEPGK-QGAPGASGDRGPPGPVGPPGLTGPAGE---PGREGS-PGADGPPG 1001
Query: 503 R 503
R
Sbjct: 1002 R 1002
Score = 125 (49.1 bits), Expect = 0.00050, P = 0.00050
Identities = 87/281 (30%), Positives = 99/281 (35%)
Query: 237 ADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGA-GPNTSTS-A 294
ADG G E G G + G P GP G GA GP +T
Sbjct: 795 ADGQPGAKGDQGEAGQKG-DAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFP 853
Query: 295 YAATQSGTPMRAAYDIPRGPGYEASKGP-GYDASKAPSYDP-TKGPSYDPA-KGPGYDP- 350
AA + G P P GP GP G D K D G + DP +GP P
Sbjct: 854 GAAGRVGPPGSNGNPGPAGP-----PGPAGKDGPKGARGDTGAPGRAGDPGLQGPAGAPG 908
Query: 351 TKG-PGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGL-GYDMQRGPN-YDMQRGPGYET- 406
KG PG D GS D GP +G + QRG+ G QRG + GP E
Sbjct: 909 EKGEPGDDGPSGS--DGPPGP-----QGLA--GQRGIVGLPGQRGERGFPGLPGPSGEPG 959
Query: 407 -QRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRR--APSYDPSRG-TGFDG 462
Q PG RGP P PG + G R A RG TG G
Sbjct: 960 KQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGALG 1019
Query: 463 APRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRG-GNPA 502
AP P G P P P G +G+ P G PA
Sbjct: 1020 APGAPGPPGS-PGPAG--PTGKQGDRGEAGAQGPMGPSGPA 1057
>UNIPROTKB|F1LQ06 [details] [associations]
symbol:Col2a1 "Collagen alpha-1(II) chain" species:10116
"Rattus norvegicus" [GO:0005201 "extracellular matrix structural
constituent" evidence=IEA] [GO:0005581 "collagen" evidence=IEA]
InterPro:IPR000885 InterPro:IPR001007 Pfam:PF00093 Pfam:PF01410
ProDom:PD002078 PROSITE:PS01208 PROSITE:PS50184 PROSITE:PS51461
SMART:SM00038 SMART:SM00214 RGD:2375 GO:GO:0005581
InterPro:IPR008160 Pfam:PF01391 GO:GO:0005201 IPI:IPI00949996
Ensembl:ENSRNOT00000066385 ArrayExpress:F1LQ06 Uniprot:F1LQ06
Length = 1441
Score = 130 (50.8 bits), Expect = 0.00014, P = 0.00014
Identities = 82/285 (28%), Positives = 106/285 (37%)
Query: 230 PNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGA-GP 288
P R GA GN P G G G P G P + AG GA GP
Sbjct: 283 PGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFP---GAPGAKGEAGPTGARGP 339
Query: 289 NTSTSAYAATQS-GTPMRAAYDIPRG----PGYEASKG-PGYDASKAPSYDPTKGPSYDP 342
+ + + G+P A G PG + S G PG + AP + +GP P
Sbjct: 340 EGAQGSRGEPGNPGSPGPAGASGNPGTDGIPGAKGSAGAPGI--AGAPGFPGPRGP---P 394
Query: 343 AKGP-GYDPTKGP-GYDAQKG-SNYDAQRGPNYDIH-RGPSYDPQRGLGYDMQRGPNYDM 398
GP G GP G + G + + ++GP + GP P G + +RG +
Sbjct: 395 --GPQGATGPLGPKGQTGEPGIAGFKGEQGPKGETGPAGPQGAPGPA-GEEGKRGARGEP 451
Query: 399 Q-RGP-GYETQR-VPGYDVQRG-PVYEAQRAPSYIP-QRGP-GYDLQRGQGYDMRRAPSY 452
GP G +R PG RG P + P P +RGP G +G D R
Sbjct: 452 GGAGPIGPPGERGAPG---NRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEP 508
Query: 453 DPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGS-GQP 496
G G P A P G+V P G PP G+ GQP
Sbjct: 509 GLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQP 553
Score = 126 (49.4 bits), Expect = 0.00039, P = 0.00039
Identities = 89/301 (29%), Positives = 117/301 (38%)
Query: 235 RAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPP-PSATTA--GVVGA-GPNT 290
R A G G G+ + P G + G G+ GPP P+ G VG GP+
Sbjct: 709 RGAAG-IAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPSG 767
Query: 291 STSAYAAT----QSGTPMRAAYDIPRGP-GYEASKGP-GYDASKAPSYDP-TKGPSYDPA 343
ST A A ++G P A + P G G +KG G K + P +GPS P
Sbjct: 768 STGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGDQGEAGQKGDAGAPGPQGPSGAPG 827
Query: 344 -KGP-GYDPTKGP-GYDAQKGSN-YDAQRG----PNYDIHRGPSYDPQRGLGYDMQRGPN 395
+GP G KG G G+ + G P + + GP+ P G D +G
Sbjct: 828 PQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPA-GPPGPAGKDGPKGAR 886
Query: 396 YDM----QRG-PGYETQR-VPGYDVQRG---PV-YEAQRAPSYIP-QRG-PGYDLQRGQ- 442
D + G PG + PG + G P + P + QRG G QRG+
Sbjct: 887 GDTGAPGRAGDPGLQGPAGAPGEKGEPGDDGPSGSDGPPGPQGLAGQRGIVGLPGQRGER 946
Query: 443 GYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRGGNPA 502
G+ PS +P + G GA P G V PP P G P R GS G P
Sbjct: 947 GFPGLPGPSGEPGK-QGAPGASGDRGPPGPVGPPGLTGPAGE---PGREGS-PGADGPPG 1001
Query: 503 R 503
R
Sbjct: 1002 R 1002
Score = 125 (49.1 bits), Expect = 0.00050, P = 0.00050
Identities = 87/281 (30%), Positives = 99/281 (35%)
Query: 237 ADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGA-GPNTSTS-A 294
ADG G E G G + G P GP G GA GP +T
Sbjct: 795 ADGQPGAKGDQGEAGQKG-DAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFP 853
Query: 295 YAATQSGTPMRAAYDIPRGPGYEASKGP-GYDASKAPSYDP-TKGPSYDPA-KGPGYDP- 350
AA + G P P GP GP G D K D G + DP +GP P
Sbjct: 854 GAAGRVGPPGSNGNPGPAGP-----PGPAGKDGPKGARGDTGAPGRAGDPGLQGPAGAPG 908
Query: 351 TKG-PGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGL-GYDMQRGPN-YDMQRGPGYET- 406
KG PG D GS D GP +G + QRG+ G QRG + GP E
Sbjct: 909 EKGEPGDDGPSGS--DGPPGP-----QGLA--GQRGIVGLPGQRGERGFPGLPGPSGEPG 959
Query: 407 -QRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRR--APSYDPSRG-TGFDG 462
Q PG RGP P PG + G R A RG TG G
Sbjct: 960 KQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGALG 1019
Query: 463 APRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRG-GNPA 502
AP P G P P P G +G+ P G PA
Sbjct: 1020 APGAPGPPGS-PGPAG--PTGKQGDRGEAGAQGPMGPSGPA 1057
>MGI|MGI:88467 [details] [associations]
symbol:Col1a1 "collagen, type I, alpha 1" species:10090 "Mus
musculus" [GO:0001501 "skeletal system development"
evidence=ISO;IMP] [GO:0001568 "blood vessel development"
evidence=ISO;IMP] [GO:0001957 "intramembranous ossification"
evidence=IGI] [GO:0001958 "endochondral ossification" evidence=IMP]
[GO:0005201 "extracellular matrix structural constituent"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005576 "extracellular region" evidence=IEA] [GO:0005578
"proteinaceous extracellular matrix" evidence=IDA] [GO:0005581
"collagen" evidence=IMP;IDA] [GO:0005584 "collagen type I"
evidence=ISO;IMP;IDA] [GO:0005615 "extracellular space"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007601
"visual perception" evidence=ISO] [GO:0007605 "sensory perception
of sound" evidence=ISO] [GO:0010718 "positive regulation of
epithelial to mesenchymal transition" evidence=ISO] [GO:0010812
"negative regulation of cell-substrate adhesion" evidence=IDA]
[GO:0015031 "protein transport" evidence=IMP] [GO:0030199 "collagen
fibril organization" evidence=ISO] [GO:0030335 "positive regulation
of cell migration" evidence=ISO] [GO:0031012 "extracellular matrix"
evidence=IDA] [GO:0032964 "collagen biosynthetic process"
evidence=ISO] [GO:0034504 "protein localization to nucleus"
evidence=ISO] [GO:0034505 "tooth mineralization" evidence=ISO]
[GO:0042060 "wound healing" evidence=ISO] [GO:0042802 "identical
protein binding" evidence=ISO] [GO:0043588 "skin development"
evidence=IMP] [GO:0043589 "skin morphogenesis" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0048407 "platelet-derived growth factor binding" evidence=ISO]
[GO:0048705 "skeletal system morphogenesis" evidence=IGI]
[GO:0048706 "embryonic skeletal system development" evidence=ISO]
[GO:0060325 "face morphogenesis" evidence=IGI] [GO:0060346 "bone
trabecula formation" evidence=IGI] [GO:0060351 "cartilage
development involved in endochondral bone morphogenesis"
evidence=IMP] [GO:0070208 "protein heterotrimerization"
evidence=IDA] [GO:0071230 "cellular response to amino acid
stimulus" evidence=IDA] [GO:0090263 "positive regulation of
canonical Wnt receptor signaling pathway" evidence=ISO]
InterPro:IPR000885 InterPro:IPR001007 Pfam:PF00093 Pfam:PF01410
ProDom:PD002078 PROSITE:PS01208 PROSITE:PS50184 PROSITE:PS51461
SMART:SM00038 SMART:SM00214 MGI:MGI:88467 GO:GO:0005737
GO:GO:0045893 GO:GO:0043588 GO:GO:0005615 GO:GO:0071363
GO:GO:0046872 GO:GO:0015031 GO:GO:0007601 GO:GO:0071300
GO:GO:0043434 GO:GO:0030199 GO:GO:0007584 GO:GO:0010035
GO:GO:0007605 GO:GO:0010718 GO:GO:0030335 GO:GO:0042542
GO:GO:0070208 InterPro:IPR008160 Pfam:PF01391 eggNOG:NOG12793
GO:GO:0071260 GO:GO:0001568 GO:GO:0001649 GO:GO:0051591
GO:GO:0034505 GO:GO:0090263 GO:GO:0010812 GO:GO:0060325
GO:GO:0032964 GO:GO:0071230 GO:GO:0048706 GO:GO:0001957
GO:GO:0034504 GO:GO:0001958 GO:GO:0060351 GO:GO:0005201
GO:GO:0043589 CTD:1277 GeneTree:ENSGT00660000095287
HOVERGEN:HBG004933 KO:K06236 OMA:VAYMDQQ OrthoDB:EOG4S4PHP
GO:GO:0005584 GO:GO:0060346 ChiTaRS:COL1A1 GO:GO:0031960
EMBL:U08020 EMBL:AL662790 EMBL:AL606480 EMBL:BC050014 EMBL:BC059281
EMBL:K01688 EMBL:S67530 EMBL:S67482 EMBL:X54876 EMBL:M14423
EMBL:M17491 EMBL:K03036 EMBL:K03029 EMBL:K03030 EMBL:K03031
EMBL:K03032 EMBL:K03033 EMBL:K03034 EMBL:K03035 EMBL:X06753
EMBL:X15896 EMBL:X57981 IPI:IPI00329872 IPI:IPI00623191 PIR:I49558
PIR:S57243 RefSeq:NP_031768.2 UniGene:Mm.277735 UniGene:Mm.458212
ProteinModelPortal:P11087 SMR:P11087 IntAct:P11087 STRING:P11087
PhosphoSite:P11087 PaxDb:P11087 PRIDE:P11087
Ensembl:ENSMUST00000001547 GeneID:12842 KEGG:mmu:12842
UCSC:uc007kzn.1 InParanoid:P11087 NextBio:282376 PMAP-CutDB:P11087
Bgee:P11087 CleanEx:MM_COL1A1 Genevestigator:P11087
GermOnline:ENSMUSG00000001506 Uniprot:P11087
Length = 1453
Score = 130 (50.8 bits), Expect = 0.00015, P = 0.00015
Identities = 79/254 (31%), Positives = 95/254 (37%)
Query: 256 PVGQNAYEDGYGVPQGHGPPPSAT----TAGVVGAGPNTSTSAYAATQSGTPMRAAYDIP 311
P+G N G P+G PP AT AG VG P S +A G + P
Sbjct: 841 PIG-NVGAPGPKGPRGAAGPPGATGFPGAAGRVGP-PGPSGNAGPPGPPGPVGKEGGKGP 898
Query: 312 RGPGYEASKGPGYDASKAPSYDPTKGPSYDP-AKGPGYDP-TKGP-GYDAQKGS-NYDAQ 367
RG A + PG P P G P A GP P T GP G Q+G Q
Sbjct: 899 RGETGPAGR-PGEVGPPGPP-GPA-GEKGSPGADGPAGSPGTPGPQGIAGQRGVVGLPGQ 955
Query: 368 RGPN-YDIHRGPSYDP-QRG-LGYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQR 424
RG + GPS +P ++G G +RGP M GP PG GP E+ R
Sbjct: 956 RGERGFPGLPGPSGEPGKQGPSGSSGERGPPGPM--GP-------PGL---AGPPGESGR 1003
Query: 425 APSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGS 484
S + PG D G D P G GAP P G+ P G
Sbjct: 1004 EGSPGAEGSPGRDGAPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKNGDRGETGPAGP 1063
Query: 485 ATPPARSGSGQPRG 498
A P +G+ P G
Sbjct: 1064 AGPIGPAGARGPAG 1077
>UNIPROTKB|F1M8G1 [details] [associations]
symbol:Col2a1 "Collagen alpha-1(II) chain" species:10116
"Rattus norvegicus" [GO:0005201 "extracellular matrix structural
constituent" evidence=IEA] [GO:0005581 "collagen" evidence=IEA]
InterPro:IPR000885 InterPro:IPR001007 Pfam:PF00093 Pfam:PF01410
ProDom:PD002078 PROSITE:PS01208 PROSITE:PS50184 PROSITE:PS51461
SMART:SM00038 SMART:SM00214 RGD:2375 GO:GO:0005581
InterPro:IPR008160 Pfam:PF01391 GO:GO:0005201 IPI:IPI00475975
Ensembl:ENSRNOT00000050833 ArrayExpress:F1M8G1 Uniprot:F1M8G1
Length = 1458
Score = 130 (50.8 bits), Expect = 0.00015, P = 0.00015
Identities = 82/285 (28%), Positives = 106/285 (37%)
Query: 230 PNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGA-GP 288
P R GA GN P G G G P G P + AG GA GP
Sbjct: 300 PGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFP---GAPGAKGEAGPTGARGP 356
Query: 289 NTSTSAYAATQS-GTPMRAAYDIPRG----PGYEASKG-PGYDASKAPSYDPTKGPSYDP 342
+ + + G+P A G PG + S G PG + AP + +GP P
Sbjct: 357 EGAQGSRGEPGNPGSPGPAGASGNPGTDGIPGAKGSAGAPGI--AGAPGFPGPRGP---P 411
Query: 343 AKGP-GYDPTKGP-GYDAQKG-SNYDAQRGPNYDIH-RGPSYDPQRGLGYDMQRGPNYDM 398
GP G GP G + G + + ++GP + GP P G + +RG +
Sbjct: 412 --GPQGATGPLGPKGQTGEPGIAGFKGEQGPKGETGPAGPQGAPGPA-GEEGKRGARGEP 468
Query: 399 Q-RGP-GYETQR-VPGYDVQRG-PVYEAQRAPSYIP-QRGP-GYDLQRGQGYDMRRAPSY 452
GP G +R PG RG P + P P +RGP G +G D R
Sbjct: 469 GGAGPIGPPGERGAPG---NRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEP 525
Query: 453 DPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGS-GQP 496
G G P A P G+V P G PP G+ GQP
Sbjct: 526 GLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQP 570
Score = 126 (49.4 bits), Expect = 0.00040, P = 0.00040
Identities = 89/301 (29%), Positives = 117/301 (38%)
Query: 235 RAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPP-PSATTA--GVVGA-GPNT 290
R A G G G+ + P G + G G+ GPP P+ G VG GP+
Sbjct: 726 RGAAG-IAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPSG 784
Query: 291 STSAYAAT----QSGTPMRAAYDIPRGP-GYEASKGP-GYDASKAPSYDP-TKGPSYDPA 343
ST A A ++G P A + P G G +KG G K + P +GPS P
Sbjct: 785 STGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGDQGEAGQKGDAGAPGPQGPSGAPG 844
Query: 344 -KGP-GYDPTKGP-GYDAQKGSN-YDAQRG----PNYDIHRGPSYDPQRGLGYDMQRGPN 395
+GP G KG G G+ + G P + + GP+ P G D +G
Sbjct: 845 PQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPA-GPPGPAGKDGPKGAR 903
Query: 396 YDM----QRG-PGYETQR-VPGYDVQRG---PV-YEAQRAPSYIP-QRG-PGYDLQRGQ- 442
D + G PG + PG + G P + P + QRG G QRG+
Sbjct: 904 GDTGAPGRAGDPGLQGPAGAPGEKGEPGDDGPSGSDGPPGPQGLAGQRGIVGLPGQRGER 963
Query: 443 GYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRGGNPA 502
G+ PS +P + G GA P G V PP P G P R GS G P
Sbjct: 964 GFPGLPGPSGEPGK-QGAPGASGDRGPPGPVGPPGLTGPAGE---PGREGS-PGADGPPG 1018
Query: 503 R 503
R
Sbjct: 1019 R 1019
Score = 125 (49.1 bits), Expect = 0.00051, P = 0.00051
Identities = 87/281 (30%), Positives = 99/281 (35%)
Query: 237 ADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGA-GPNTSTS-A 294
ADG G E G G + G P GP G GA GP +T
Sbjct: 812 ADGQPGAKGDQGEAGQKG-DAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFP 870
Query: 295 YAATQSGTPMRAAYDIPRGPGYEASKGP-GYDASKAPSYDP-TKGPSYDPA-KGPGYDP- 350
AA + G P P GP GP G D K D G + DP +GP P
Sbjct: 871 GAAGRVGPPGSNGNPGPAGP-----PGPAGKDGPKGARGDTGAPGRAGDPGLQGPAGAPG 925
Query: 351 TKG-PGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGL-GYDMQRGPN-YDMQRGPGYET- 406
KG PG D GS D GP +G + QRG+ G QRG + GP E
Sbjct: 926 EKGEPGDDGPSGS--DGPPGP-----QGLA--GQRGIVGLPGQRGERGFPGLPGPSGEPG 976
Query: 407 -QRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRR--APSYDPSRG-TGFDG 462
Q PG RGP P PG + G R A RG TG G
Sbjct: 977 KQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGALG 1036
Query: 463 APRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRG-GNPA 502
AP P G P P P G +G+ P G PA
Sbjct: 1037 APGAPGPPGS-PGPAG--PTGKQGDRGEAGAQGPMGPSGPA 1074
Score = 123 (48.4 bits), Expect = 0.00084, P = 0.00084
Identities = 87/286 (30%), Positives = 109/286 (38%)
Query: 238 DGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAA 297
DG+ G + E T G P G G P G G A A + G + A
Sbjct: 113 DGAPGPRGRDGEPGTPGNP-GPPGPPGPPG-PPGLGGGNFA--AQMAGGFDEKAGGAQMG 168
Query: 298 TQSGTPMRAAYDIPRGP-GYEASKGP-GYDASKAPSYDP-TKGPSYDPAKGPGYDPTKGP 354
G PM PRGP G + GP G+ + +P GP P PG P P
Sbjct: 169 VMQG-PMGPMG--PRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPM-GPRGPPG--PAGKP 222
Query: 355 GYDAQKGSNYDA-QRG-PNYDIHRGPSYDPQRGL-GYDMQRG-PNYDMQRG----PGYET 406
G D + G A +RG P RG P GL G RG P D +G PG +
Sbjct: 223 GDDGEAGKPGKAGERGLPGPQGARGFPGTP--GLPGVKGHRGYPGLDGAKGEAGAPGVKG 280
Query: 407 QR-VPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPS-----YDPSRGTGF 460
+ PG + GP+ + P + GP +G D + P+ P+ G GF
Sbjct: 281 ESGSPGENGSPGPM-GPRGLPGERGRTGPA-GAAGARGNDGQPGPAGPPGPVGPAGGPGF 338
Query: 461 DGAP--RG-AAPHGQVPPPLNNVPYGSATPPARSGSGQPRG--GNP 501
GAP +G A P G P GS P GS P G GNP
Sbjct: 339 PGAPGAKGEAGPTGARGP---EGAQGSRGEPGNPGSPGPAGASGNP 381
>UNIPROTKB|F1LP41 [details] [associations]
symbol:Col2a1 "Collagen alpha-1(II) chain" species:10116
"Rattus norvegicus" [GO:0005201 "extracellular matrix structural
constituent" evidence=IEA] [GO:0005581 "collagen" evidence=IEA]
InterPro:IPR000885 InterPro:IPR001007 Pfam:PF00093 Pfam:PF01410
ProDom:PD002078 PROSITE:PS01208 PROSITE:PS50184 PROSITE:PS51461
SMART:SM00038 SMART:SM00214 RGD:2375 GO:GO:0005581
InterPro:IPR008160 Pfam:PF01391 GO:GO:0005201 IPI:IPI00205809
Ensembl:ENSRNOT00000012441 ArrayExpress:F1LP41 Uniprot:F1LP41
Length = 1458
Score = 130 (50.8 bits), Expect = 0.00015, P = 0.00015
Identities = 82/285 (28%), Positives = 106/285 (37%)
Query: 230 PNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGA-GP 288
P R GA GN P G G G P G P + AG GA GP
Sbjct: 300 PGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFP---GAPGAKGEAGPTGARGP 356
Query: 289 NTSTSAYAATQS-GTPMRAAYDIPRG----PGYEASKG-PGYDASKAPSYDPTKGPSYDP 342
+ + + G+P A G PG + S G PG + AP + +GP P
Sbjct: 357 EGAQGSRGEPGNPGSPGPAGASGNPGTDGIPGAKGSAGAPGI--AGAPGFPGPRGP---P 411
Query: 343 AKGP-GYDPTKGP-GYDAQKG-SNYDAQRGPNYDIH-RGPSYDPQRGLGYDMQRGPNYDM 398
GP G GP G + G + + ++GP + GP P G + +RG +
Sbjct: 412 --GPQGATGPLGPKGQTGEPGIAGFKGEQGPKGETGPAGPQGAPGPA-GEEGKRGARGEP 468
Query: 399 Q-RGP-GYETQR-VPGYDVQRG-PVYEAQRAPSYIP-QRGP-GYDLQRGQGYDMRRAPSY 452
GP G +R PG RG P + P P +RGP G +G D R
Sbjct: 469 GGAGPIGPPGERGAPG---NRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEP 525
Query: 453 DPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGS-GQP 496
G G P A P G+V P G PP G+ GQP
Sbjct: 526 GLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQP 570
Score = 126 (49.4 bits), Expect = 0.00040, P = 0.00040
Identities = 89/301 (29%), Positives = 117/301 (38%)
Query: 235 RAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPP-PSATTA--GVVGA-GPNT 290
R A G G G+ + P G + G G+ GPP P+ G VG GP+
Sbjct: 726 RGAAG-IAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPSG 784
Query: 291 STSAYAAT----QSGTPMRAAYDIPRGP-GYEASKGP-GYDASKAPSYDP-TKGPSYDPA 343
ST A A ++G P A + P G G +KG G K + P +GPS P
Sbjct: 785 STGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGDQGEAGQKGDAGAPGPQGPSGAPG 844
Query: 344 -KGP-GYDPTKGP-GYDAQKGSN-YDAQRG----PNYDIHRGPSYDPQRGLGYDMQRGPN 395
+GP G KG G G+ + G P + + GP+ P G D +G
Sbjct: 845 PQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPA-GPPGPAGKDGPKGAR 903
Query: 396 YDM----QRG-PGYETQR-VPGYDVQRG---PV-YEAQRAPSYIP-QRG-PGYDLQRGQ- 442
D + G PG + PG + G P + P + QRG G QRG+
Sbjct: 904 GDTGAPGRAGDPGLQGPAGAPGEKGEPGDDGPSGSDGPPGPQGLAGQRGIVGLPGQRGER 963
Query: 443 GYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRGGNPA 502
G+ PS +P + G GA P G V PP P G P R GS G P
Sbjct: 964 GFPGLPGPSGEPGK-QGAPGASGDRGPPGPVGPPGLTGPAGE---PGREGS-PGADGPPG 1018
Query: 503 R 503
R
Sbjct: 1019 R 1019
Score = 125 (49.1 bits), Expect = 0.00051, P = 0.00051
Identities = 87/281 (30%), Positives = 99/281 (35%)
Query: 237 ADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGA-GPNTSTS-A 294
ADG G E G G + G P GP G GA GP +T
Sbjct: 812 ADGQPGAKGDQGEAGQKG-DAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFP 870
Query: 295 YAATQSGTPMRAAYDIPRGPGYEASKGP-GYDASKAPSYDP-TKGPSYDPA-KGPGYDP- 350
AA + G P P GP GP G D K D G + DP +GP P
Sbjct: 871 GAAGRVGPPGSNGNPGPAGP-----PGPAGKDGPKGARGDTGAPGRAGDPGLQGPAGAPG 925
Query: 351 TKG-PGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGL-GYDMQRGPN-YDMQRGPGYET- 406
KG PG D GS D GP +G + QRG+ G QRG + GP E
Sbjct: 926 EKGEPGDDGPSGS--DGPPGP-----QGLA--GQRGIVGLPGQRGERGFPGLPGPSGEPG 976
Query: 407 -QRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRR--APSYDPSRG-TGFDG 462
Q PG RGP P PG + G R A RG TG G
Sbjct: 977 KQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGALG 1036
Query: 463 APRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRG-GNPA 502
AP P G P P P G +G+ P G PA
Sbjct: 1037 APGAPGPPGS-PGPAG--PTGKQGDRGEAGAQGPMGPSGPA 1074
>UNIPROTKB|P04280 [details] [associations]
symbol:PRB1 "Basic salivary proline-rich protein 1"
species:9606 "Homo sapiens" [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005576 "extracellular region" evidence=NAS] GO:GO:0005576
PIR:B40750 InterPro:IPR026086 PANTHER:PTHR23203 EMBL:K03204
EMBL:K03205 EMBL:K03206 EMBL:S52986 EMBL:M97220 EMBL:K02575
EMBL:K02576 EMBL:X07516 EMBL:X07517 EMBL:S62928 EMBL:S62941
IPI:IPI00023038 PIR:C38355 PIR:D40750 RefSeq:NP_005030.2
RefSeq:NP_955385.1 RefSeq:NP_955386.1 UniGene:Hs.631726
ProteinModelPortal:P04280 STRING:P04280 PhosphoSite:P04280
DMDM:52001469 PRIDE:P04280 GeneID:5542 KEGG:hsa:5542 CTD:5542
GeneCards:GC12M011504 HGNC:HGNC:9337 MIM:180989 neXtProt:NX_P04280
PharmGKB:PA33699 KO:K13911 GenomeRNAi:5542 NextBio:21470
ArrayExpress:P04280 CleanEx:HS_PRB1 Genevestigator:P04280
Uniprot:P04280
Length = 392
Score = 123 (48.4 bits), Expect = 0.00015, P = 0.00015
Identities = 76/279 (27%), Positives = 94/279 (33%)
Query: 242 GGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNT-STSAYAATQS 300
GG G+P G G PQG PPP G G + S +
Sbjct: 43 GGNKPQGPPPPPGKPQGPPP--QGGNKPQG--PPPPGKPQGPPPQGDKSRSPRSPPGKPQ 98
Query: 301 GTPMRAAYDIPRGPGYEASK--GPGYDASKAPSYDPTKG------PSYDPAKGPGYDPTK 352
G P + P+GP K GP P P G P D ++ P P K
Sbjct: 99 GPPPQGGNQ-PQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSQSPRSPPGK 157
Query: 353 GPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGP---GYETQ-- 407
G Q G N P +GP P +G G Q P +GP G ++Q
Sbjct: 158 PQGPPPQ-GGNQPQGPPPPPGKPQGP---PPQG-GNKPQGPPPPGKPQGPPPQGDKSQSP 212
Query: 408 RVP-----GYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDG 462
R P G Q G + P PQ P R QG P P +G
Sbjct: 213 RSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPQQGGNRPQGPPPPGKPQGPPPQGDK-SR 271
Query: 463 APRGAAPHGQVPPPLN-NVPYGSATPPARSGSGQPRGGN 500
+P+ Q PPP N P G PP + P+GGN
Sbjct: 272 SPQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGN 310
>UNIPROTKB|F1PGS0 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 GO:GO:0003677 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 OMA:KVLPWST EMBL:AAEX03003616
EMBL:AAEX03003617 Ensembl:ENSCAFT00000026237 Uniprot:F1PGS0
Length = 1969
Score = 144 (55.7 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 72/276 (26%), Positives = 99/276 (35%)
Query: 218 EVEKLRAELMNAPNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPP- 276
+ EK + + N+ A G G G++ + G + G G P
Sbjct: 1476 DAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSV 1535
Query: 277 -SATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPT 335
S T G G P+ ++ A + +P A P PG PG + PS
Sbjct: 1536 GSGMTPGAAGFSPSAASDASGFSPGYSP--AWSPTPGSPG-----SPGPSSPYIPSPGGA 1588
Query: 336 KGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPN 395
PSY P P Y+P GY Q S Y + P+Y PSY P Y P+
Sbjct: 1589 MSPSYSPTS-PAYEPRSPGGYTPQSPS-Y-SPTSPSYS-PTSPSYSPTSP-NYS-PTSPS 1642
Query: 396 YDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPS 455
Y P Y P Y P Y + +PSY P P Y Y +PSY P+
Sbjct: 1643 YS-PTSPSYSPTS-PSYS-PTSPSY-SPTSPSYSPT-SPSYS-PTSPSYSPT-SPSYSPT 1695
Query: 456 RGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARS 491
+ +P +P P + P S T P+ S
Sbjct: 1696 SPSYSPTSP-SYSPTSPSYSPTS--PSYSPTSPSYS 1728
Score = 37 (18.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 52 EQKIASQHVEMQKLAT 67
E +A + VE Q LAT
Sbjct: 893 EDGLAGESVEFQNLAT 908
>UNIPROTKB|G3MZY8 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0031625 "ubiquitin protein ligase binding"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0004672 "protein kinase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
SMART:SM00663 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 OMA:KVLPWST EMBL:DAAA02048777
EMBL:DAAA02048778 EMBL:DAAA02048779 EMBL:DAAA02048780
EMBL:DAAA02048781 Ensembl:ENSBTAT00000064788 Uniprot:G3MZY8
Length = 1970
Score = 144 (55.7 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 72/276 (26%), Positives = 99/276 (35%)
Query: 218 EVEKLRAELMNAPNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPP- 276
+ EK + + N+ A G G G++ + G + G G P
Sbjct: 1477 DAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSV 1536
Query: 277 -SATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPT 335
S T G G P+ ++ A + +P A P PG PG + PS
Sbjct: 1537 GSGMTPGAAGFSPSAASDASGFSPGYSP--AWSPTPGSPG-----SPGPSSPYIPSPGGA 1589
Query: 336 KGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPN 395
PSY P P Y+P GY Q S Y + P+Y PSY P Y P+
Sbjct: 1590 MSPSYSPTS-PAYEPRSPGGYTPQSPS-Y-SPTSPSYS-PTSPSYSPTSP-NYS-PTSPS 1643
Query: 396 YDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPS 455
Y P Y P Y P Y + +PSY P P Y Y +PSY P+
Sbjct: 1644 YS-PTSPSYSPTS-PSYS-PTSPSY-SPTSPSYSPT-SPSYS-PTSPSYSPT-SPSYSPT 1696
Query: 456 RGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARS 491
+ +P +P P + P S T P+ S
Sbjct: 1697 SPSYSPTSP-SYSPTSPSYSPTS--PSYSPTSPSYS 1729
Score = 37 (18.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 52 EQKIASQHVEMQKLAT 67
E +A + VE Q LAT
Sbjct: 893 EDGLAGESVEFQNLAT 908
>UNIPROTKB|P24928 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase II subunit RPB1"
species:9606 "Homo sapiens" [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003677 "DNA binding" evidence=NAS] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=NAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0006366
"transcription from RNA polymerase II promoter"
evidence=IDA;NAS;TAS] [GO:0005634 "nucleus" evidence=IDA;NAS]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IDA] [GO:0004672 "protein kinase activity" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0031625 "ubiquitin protein ligase binding" evidence=IPI]
[GO:0006468 "protein phosphorylation" evidence=IDA]
Reactome:REACT_216 Reactome:REACT_71 InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 Reactome:REACT_116125
EMBL:CH471108 GO:GO:0016032 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 Reactome:REACT_1675 GO:GO:0006468 GO:GO:0006368
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006367 GO:GO:0000398
Reactome:REACT_1788 GO:GO:0006370 GO:GO:0050434 GO:GO:0006283
Reactome:REACT_1892 EMBL:AC113189 GO:GO:0003899 PDB:2GHQ PDB:2GHT
PDBsum:2GHQ PDBsum:2GHT eggNOG:COG0086 GO:GO:0003968 GO:GO:0005665
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 EMBL:X63564 EMBL:X74874
EMBL:X74873 EMBL:X74872 EMBL:X74871 EMBL:X74870 EMBL:BC137231
IPI:IPI00031627 PIR:I38186 PIR:S21054 RefSeq:NP_000928.1
UniGene:Hs.270017 PDB:2LTO PDBsum:2LTO ProteinModelPortal:P24928
SMR:P24928 DIP:DIP-29011N IntAct:P24928 MINT:MINT-156582
STRING:P24928 PhosphoSite:P24928 DMDM:281185484 PaxDb:P24928
PRIDE:P24928 Ensembl:ENST00000322644 GeneID:5430 KEGG:hsa:5430
UCSC:uc002ghf.4 CTD:5430 GeneCards:GC17P007387 H-InvDB:HIX0173727
HGNC:HGNC:9187 HPA:CAB012226 HPA:CAB016388 HPA:CAB022311
HPA:HPA021563 MIM:180660 neXtProt:NX_P24928 PharmGKB:PA33507
HOVERGEN:HBG004339 InParanoid:P24928 OrthoDB:EOG4JWVCM
BindingDB:P24928 ChEMBL:CHEMBL1641353 ChiTaRS:POLR2A
EvolutionaryTrace:P24928 GenomeRNAi:5430 NextBio:21009
ArrayExpress:P24928 Bgee:P24928 CleanEx:HS_POLR2A
Genevestigator:P24928 GermOnline:ENSG00000181222 Uniprot:P24928
Length = 1970
Score = 144 (55.7 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 72/276 (26%), Positives = 99/276 (35%)
Query: 218 EVEKLRAELMNAPNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPP- 276
+ EK + + N+ A G G G++ + G + G G P
Sbjct: 1476 DAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSV 1535
Query: 277 -SATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPT 335
S T G G P+ ++ A + +P A P PG PG + PS
Sbjct: 1536 GSGMTPGAAGFSPSAASDASGFSPGYSP--AWSPTPGSPG-----SPGPSSPYIPSPGGA 1588
Query: 336 KGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPN 395
PSY P P Y+P GY Q S Y + P+Y PSY P Y P+
Sbjct: 1589 MSPSYSPTS-PAYEPRSPGGYTPQSPS-Y-SPTSPSYS-PTSPSYSPTSP-NYS-PTSPS 1642
Query: 396 YDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPS 455
Y P Y P Y P Y + +PSY P P Y Y +PSY P+
Sbjct: 1643 YS-PTSPSYSPTS-PSYS-PTSPSY-SPTSPSYSPT-SPSYS-PTSPSYSPT-SPSYSPT 1695
Query: 456 RGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARS 491
+ +P +P P + P S T P+ S
Sbjct: 1696 SPSYSPTSP-SYSPTSPSYSPTS--PSYSPTSPSYS 1728
Score = 37 (18.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 52 EQKIASQHVEMQKLAT 67
E +A + VE Q LAT
Sbjct: 893 EDGLAGESVEFQNLAT 908
>MGI|MGI:98086 [details] [associations]
symbol:Polr2a "polymerase (RNA) II (DNA directed) polypeptide
A" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0031625 "ubiquitin protein ligase binding" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 MGI:MGI:98086
GO:GO:0046872 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
EMBL:AL603707 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 GO:GO:0005665 GeneTree:ENSGT00700000104490
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 CTD:5430
HOVERGEN:HBG004339 OrthoDB:EOG4JWVCM ChiTaRS:POLR2A EMBL:M12130
EMBL:M14101 IPI:IPI00136207 PIR:A28490 RefSeq:NP_033115.1
UniGene:Mm.16533 DisProt:DP00181 ProteinModelPortal:P08775
SMR:P08775 DIP:DIP-46369N IntAct:P08775 STRING:P08775
PhosphoSite:P08775 PaxDb:P08775 PRIDE:P08775
Ensembl:ENSMUST00000058470 Ensembl:ENSMUST00000071213 GeneID:20020
KEGG:mmu:20020 UCSC:uc007jrj.1 InParanoid:Q5F298 NextBio:297535
Bgee:P08775 CleanEx:MM_POLR2A Genevestigator:P08775
GermOnline:ENSMUSG00000005198 Uniprot:P08775
Length = 1970
Score = 144 (55.7 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 72/276 (26%), Positives = 99/276 (35%)
Query: 218 EVEKLRAELMNAPNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPP- 276
+ EK + + N+ A G G G++ + G + G G P
Sbjct: 1476 DAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSV 1535
Query: 277 -SATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPT 335
S T G G P+ ++ A + +P A P PG PG + PS
Sbjct: 1536 GSGMTPGAAGFSPSAASDASGFSPGYSP--AWSPTPGSPG-----SPGPSSPYIPSPGGA 1588
Query: 336 KGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPN 395
PSY P P Y+P GY Q S Y + P+Y PSY P Y P+
Sbjct: 1589 MSPSYSPTS-PAYEPRSPGGYTPQSPS-Y-SPTSPSYS-PTSPSYSPTSP-NYS-PTSPS 1642
Query: 396 YDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPS 455
Y P Y P Y P Y + +PSY P P Y Y +PSY P+
Sbjct: 1643 YS-PTSPSYSPTS-PSYS-PTSPSY-SPTSPSYSPT-SPSYS-PTSPSYSPT-SPSYSPT 1695
Query: 456 RGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARS 491
+ +P +P P + P S T P+ S
Sbjct: 1696 SPSYSPTSP-SYSPTSPSYSPTS--PSYSPTSPSYS 1728
Score = 37 (18.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 52 EQKIASQHVEMQKLAT 67
E +A + VE Q LAT
Sbjct: 893 EDGLAGESVEFQNLAT 908
>RGD|1587326 [details] [associations]
symbol:Polr2a "polymerase (RNA) II (DNA directed) polypeptide A"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0004672 "protein kinase activity" evidence=IEA;ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA;ISO] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0006468 "protein
phosphorylation" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0031625 "ubiquitin protein ligase binding"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
SMART:SM00663 RGD:1587326 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 KO:K03006 CTD:5430 OrthoDB:EOG4JWVCM
IPI:IPI00952328 RefSeq:XP_001079162.1 RefSeq:XP_343923.3
UniGene:Rn.163136 Ensembl:ENSRNOT00000068013 GeneID:363633
KEGG:rno:363633 UCSC:RGD:1587326 NextBio:683839 ArrayExpress:D4A5A6
Uniprot:D4A5A6
Length = 1970
Score = 144 (55.7 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 72/276 (26%), Positives = 99/276 (35%)
Query: 218 EVEKLRAELMNAPNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPP- 276
+ EK + + N+ A G G G++ + G + G G P
Sbjct: 1476 DAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSV 1535
Query: 277 -SATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPT 335
S T G G P+ ++ A + +P A P PG PG + PS
Sbjct: 1536 GSGMTPGAAGFSPSAASDASGFSPGYSP--AWSPTPGSPG-----SPGPSSPYIPSPGGA 1588
Query: 336 KGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPN 395
PSY P P Y+P GY Q S Y + P+Y PSY P Y P+
Sbjct: 1589 MSPSYSPTS-PAYEPRSPGGYTPQSPS-Y-SPTSPSYS-PTSPSYSPTSP-NYS-PTSPS 1642
Query: 396 YDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPS 455
Y P Y P Y P Y + +PSY P P Y Y +PSY P+
Sbjct: 1643 YS-PTSPSYSPTS-PSYS-PTSPSY-SPTSPSYSPT-SPSYS-PTSPSYSPT-SPSYSPT 1695
Query: 456 RGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARS 491
+ +P +P P + P S T P+ S
Sbjct: 1696 SPSYSPTSP-SYSPTSPSYSPTS--PSYSPTSPSYS 1728
Score = 37 (18.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 52 EQKIASQHVEMQKLAT 67
E +A + VE Q LAT
Sbjct: 893 EDGLAGESVEFQNLAT 908
>UNIPROTKB|P12270 [details] [associations]
symbol:TPR "Nucleoprotein TPR" species:9606 "Homo sapiens"
[GO:0004828 "serine-tRNA ligase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006434 "seryl-tRNA aminoacylation"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0031965 "nuclear membrane" evidence=IDA] [GO:0005643 "nuclear
pore" evidence=IDA] [GO:0007094 "mitotic spindle assembly
checkpoint" evidence=IMP] [GO:0000776 "kinetochore" evidence=IDA]
[GO:0006404 "RNA import into nucleus" evidence=IDA] [GO:0006606
"protein import into nucleus" evidence=IMP;IDA] [GO:0005635
"nuclear envelope" evidence=IDA] [GO:0034399 "nuclear periphery"
evidence=IDA] [GO:0042803 "protein homodimerization activity"
evidence=IDA] [GO:0042405 "nuclear inclusion body" evidence=IDA]
[GO:0090267 "positive regulation of mitotic cell cycle spindle
assembly checkpoint" evidence=IMP] [GO:0090316 "positive regulation
of intracellular protein transport" evidence=IMP] [GO:1901673
"regulation of spindle assembly involved in mitosis" evidence=IMP]
[GO:0035457 "cellular response to interferon-alpha" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0046832 "negative regulation of RNA export from
nucleus" evidence=IDA;IMP] [GO:0045947 "negative regulation of
translational initiation" evidence=IMP] [GO:0031647 "regulation of
protein stability" evidence=IMP] [GO:0010793 "regulation of mRNA
export from nucleus" evidence=IMP] [GO:0042306 "regulation of
protein import into nucleus" evidence=IMP] [GO:0046825 "regulation
of protein export from nucleus" evidence=IMP] [GO:0005487
"nucleocytoplasmic transporter activity" evidence=IDA] [GO:0031453
"positive regulation of heterochromatin assembly" evidence=IMP]
[GO:0044615 "nuclear pore nuclear basket" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0019898 "extrinsic to membrane"
evidence=IDA] [GO:0043495 "protein anchor" evidence=IMP]
[GO:0051019 "mitogen-activated protein kinase binding"
evidence=IDA] [GO:0070849 "response to epidermal growth factor
stimulus" evidence=IDA] [GO:0000189 "MAPK import into nucleus"
evidence=IMP] [GO:0042307 "positive regulation of protein import
into nucleus" evidence=IMP] [GO:0070840 "dynein complex binding"
evidence=IDA] [GO:0005868 "cytoplasmic dynein complex"
evidence=IDA] [GO:0015631 "tubulin binding" evidence=IDA]
[GO:0072686 "mitotic spindle" evidence=IDA] [GO:0010965 "regulation
of mitotic sister chromatid separation" evidence=IMP] [GO:0046827
"positive regulation of protein export from nucleus" evidence=ISS]
[GO:0031990 "mRNA export from nucleus in response to heat stress"
evidence=IDA] [GO:0031072 "heat shock protein binding"
evidence=IDA] [GO:0034605 "cellular response to heat" evidence=IDA]
[GO:0003682 "chromatin binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0006999 "nuclear pore organization"
evidence=IMP] [GO:0043578 "nuclear matrix organization"
evidence=IMP] [GO:0006611 "protein export from nucleus"
evidence=IMP] [GO:0005215 "transporter activity" evidence=IMP]
[GO:0006405 "RNA export from nucleus" evidence=IMP] [GO:0051292
"nuclear pore complex assembly" evidence=IMP] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005975 "carbohydrate metabolic
process" evidence=TAS] [GO:0008645 "hexose transport" evidence=TAS]
[GO:0010827 "regulation of glucose transport" evidence=TAS]
[GO:0015758 "glucose transport" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019221 "cytokine-mediated
signaling pathway" evidence=TAS] [GO:0044281 "small molecule
metabolic process" evidence=TAS] [GO:0055085 "transmembrane
transport" evidence=TAS] Reactome:REACT_111217 Reactome:REACT_15518
InterPro:IPR012929 InterPro:IPR015866 Pfam:PF07926 GO:GO:0005524
GO:GO:0005737 Reactome:REACT_116125 Reactome:REACT_6900
GO:GO:0005654 GO:GO:0016032 GO:GO:0007094 GO:GO:0044281
GO:GO:0005975 GO:GO:0031965 EMBL:CH471067 GO:GO:0005643
GO:GO:0019221 GO:GO:0015758 GO:GO:0010827 GO:GO:0055085
GO:GO:0006606 eggNOG:NOG12793 KO:K09291 GO:GO:0051028 GO:GO:0000777
InterPro:IPR009053 SUPFAM:SSF46579 MIM:188550 Orphanet:146
EMBL:AL133553 EMBL:X62947 PIR:S23741 EMBL:AL596220 GO:GO:0004828
GO:GO:0006434 Gene3D:1.10.287.40 EMBL:X66397 EMBL:Y00672
IPI:IPI00742682 RefSeq:NP_003283.2 UniGene:Hs.279640
ProteinModelPortal:P12270 IntAct:P12270 MINT:MINT-1144652
STRING:P12270 PhosphoSite:P12270 DMDM:215274208 PaxDb:P12270
PRIDE:P12270 Ensembl:ENST00000367478 GeneID:7175 KEGG:hsa:7175
UCSC:uc001grv.3 CTD:7175 GeneCards:GC01M186281 HGNC:HGNC:12017
HPA:HPA019661 HPA:HPA019663 HPA:HPA024336 MIM:189940
neXtProt:NX_P12270 PharmGKB:PA36696 HOGENOM:HOG000139431
HOVERGEN:HBG009158 InParanoid:P12270 OMA:RFIRREK OrthoDB:EOG42RD6D
GenomeRNAi:7175 NextBio:28128 PMAP-CutDB:P12270 ArrayExpress:P12270
Bgee:P12270 CleanEx:HS_TPR Genevestigator:P12270
GermOnline:ENSG00000047410 Uniprot:P12270
Length = 2363
Score = 128 (50.1 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 41/186 (22%), Positives = 88/186 (47%)
Query: 48 PEVME-QKIASQ---HVE-MQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS 102
P+ E +K+ S+ H + +Q+L E RL A L Q+ +Q L + +++
Sbjct: 1349 PDTEEYRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRT 1408
Query: 103 ERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR 162
E+E ++L KI ++ ++KT VK ++ KT+ + L +++++ Q + D Q
Sbjct: 1409 EKETIQKDLDAKIIDIQEKVKTITQVKKIGRRYKTQYEELKAQQDKVMETSAQSSGDHQE 1468
Query: 163 AHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKL 222
H VQ++ L L + E +K ++ + +++ + + +E+ +L
Sbjct: 1469 QHVSVQEMQELKETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQSELSRL 1528
Query: 223 RAELMN 228
R +L +
Sbjct: 1529 RQDLQD 1534
Score = 55 (24.4 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 17/54 (31%), Positives = 21/54 (38%)
Query: 243 GATGNSENETSGRPVGQNAYE--DGYGVPQGHGPPPSATTAGVVGAGPNTSTSA 294
G G NE +G G + YE D G G G P T +G G +A
Sbjct: 1982 GDEGEDSNEGTGSADGNDGYEADDAEG---GDGTDPGTETEESMGGGEGNHRAA 2032
>UNIPROTKB|F1S300 [details] [associations]
symbol:TPR "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0031965 "nuclear membrane" evidence=IEA] [GO:0007094
"mitotic spindle assembly checkpoint" evidence=IEA] [GO:0005643
"nuclear pore" evidence=IEA] [GO:0000776 "kinetochore"
evidence=IEA] [GO:0006606 "protein import into nucleus"
evidence=IEA] [GO:0006434 "seryl-tRNA aminoacylation" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004828 "serine-tRNA ligase activity"
evidence=IEA] InterPro:IPR012929 InterPro:IPR015866 Pfam:PF07926
GO:GO:0005524 GO:GO:0005737 GO:GO:0000776 GO:GO:0007094
GO:GO:0031965 GO:GO:0005643 GO:GO:0006606 InterPro:IPR009053
SUPFAM:SSF46579 GeneTree:ENSGT00700000104019 GO:GO:0004828
GO:GO:0006434 Gene3D:1.10.287.40 OMA:RFIRREK EMBL:CU657929
EMBL:FP340191 Ensembl:ENSSSCT00000016969 Uniprot:F1S300
Length = 2365
Score = 128 (50.1 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 43/187 (22%), Positives = 88/187 (47%)
Query: 48 PEVME-QKIASQ---HVE-MQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS 102
P+ E +K+ S+ H + +Q+L E RL A L Q+ +Q L + +++
Sbjct: 1349 PDTEEYRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRT 1408
Query: 103 ERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR 162
E+E ++L KI ++ ++KT VK ++ KT+ + L +++++ Q + D Q
Sbjct: 1409 EKESIQKDLDAKIIDIQEKVKTITQVKKIGRRYKTQYEELKAQQDKVMETSAQSSGDHQE 1468
Query: 163 AHTDVQQIPALLSELESLRQEYHHCRGTYE-YEKKFYNDHLESLQVMEKNYITMATEVEK 221
H VQ++ L L + E +K +E+ + E+ + + +E+ +
Sbjct: 1469 QHVSVQEMQELKEALNQAEAKSKSLESQVENLQKTLSEKEMEARNLQEQT-VQLQSELSR 1527
Query: 222 LRAELMN 228
LR +L +
Sbjct: 1528 LRQDLQD 1534
Score = 55 (24.4 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 17/54 (31%), Positives = 22/54 (40%)
Query: 243 GATGNSENETSGRPVGQNAYE--DGYGVPQGHGPPPSATTAGVVGAGPNTSTSA 294
G G NE +G G + YE D G G G P T +G G + +A
Sbjct: 1984 GDEGEVSNEGTGSADGNDGYEADDAEG---GDGTDPGTETEESMGGGESNQRAA 2034
>ZFIN|ZDB-GENE-041008-78 [details] [associations]
symbol:polr2a "polymerase (RNA) II (DNA directed)
polypeptide A" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 ZFIN:ZDB-GENE-041008-78 GO:GO:0003677
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
GO:GO:0005665 GeneTree:ENSGT00700000104490 EMBL:AL929346
IPI:IPI00608319 Ensembl:ENSDART00000077495 Bgee:F1Q9K4
Uniprot:F1Q9K4
Length = 1965
Score = 131 (51.2 bits), Expect = 0.00016, P = 0.00016
Identities = 67/234 (28%), Positives = 87/234 (37%)
Query: 271 GHGPPPSATTAGVVGAGPNTSTSAYAATQ----SG-TPMRAAYDIPRGPGYEASKGPGYD 325
G P P + + + +T AY A SG TP A + P + PGY
Sbjct: 1501 GSAPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFS-PSAASDASGFSPGYS 1559
Query: 326 A--SKAPSYDPTKGPS--YDPAKG---PGYDPTKGPGYDAQK-GSNYDAQRGPNYDIHRG 377
S P + GP+ Y P+ G P Y PT P Y+ + G Y Q P Y
Sbjct: 1560 PAWSPTPGSPGSPGPASPYIPSPGALSPNYSPTS-PAYEPRSPGGGYTPQ-SPGYS-PTS 1616
Query: 378 PSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYD 437
PSY P Y PNY P Y P Y P Y + +PSY P P Y
Sbjct: 1617 PSYSPTSP-SYS-PTSPNYS-PTSPSYSPTS-PSYS-PTSPSY-SPTSPSYSPT-SPSYS 1669
Query: 438 LQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARS 491
Y +PSY P+ + +P +P P + P S T P+ S
Sbjct: 1670 -PTSPSYSPT-SPSYSPTSPSYSPTSP-SYSPTSPSYSPTS--PSYSPTSPSYS 1718
>ZFIN|ZDB-GENE-040426-2678 [details] [associations]
symbol:pdcd6ip "programmed cell death 6
interacting protein" species:7955 "Danio rerio" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR025304 Pfam:PF13949
ZFIN:ZDB-GENE-040426-2678 Gene3D:1.25.40.280 InterPro:IPR004328
Pfam:PF03097 SMART:SM01041 PROSITE:PS51180
GeneTree:ENSGT00670000098017 EMBL:CU469582 IPI:IPI00503522
Ensembl:ENSDART00000028592 ArrayExpress:F1Q5T7 Bgee:F1Q5T7
Uniprot:F1Q5T7
Length = 873
Score = 127 (49.8 bits), Expect = 0.00017, P = 0.00017
Identities = 74/329 (22%), Positives = 123/329 (37%)
Query: 79 LRQELAA---AQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKS 135
LR +LA + E ++L G++ + + + + + E+ T+ + +
Sbjct: 556 LRSQLAQLDEVKREREVLEGEVKSVTFDLTAKFLTALAQDGAINEEVMTSSELDARYGSH 615
Query: 136 KTEAQNLVVAREELIAKV---HQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYE 192
Q + +EEL++++ HQ L++++++ +L +L S Y +
Sbjct: 616 NQRVQQNLRRQEELLSQIQVSHQEFSALKQSNSEANTREDVLKKLASAHDSYIEISSNIK 675
Query: 193 YEKKFYNDHLESLQVMEKNY--ITMA--TEVEKLRAELMNAPNVDRRAADGSYGGATGNS 248
KFYND E L + I A TE ++L EL + + A S N+
Sbjct: 676 EGTKFYNDLTEILLKFQNKCSDIVFARKTERDELLKELQQSIAREPSAPSFSVPSYQSNT 735
Query: 249 ENETSG-RPVGQNAY--EDGYGVPQ--GHGPPPSATTAGVVGAGPNTSTSAYAATQSGTP 303
G P + + + PQ PPPS A P SA A S P
Sbjct: 736 PAPAGGPTPAPRTVFSQQQPQAKPQPPARPPPPSIAPQAASAAVP---VSAPMAPGSSNP 792
Query: 304 MRAAYDIPRGPGYEASKGPGYDASKA-PSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGS 362
A P GP ++GP Y + + P Y +Y+P Y+ P Y AQ +
Sbjct: 793 PPVA---PTGPSQ--AQGPPYPSYQGYPGYYQMP-MAYNPYAYGQYNMPYMP-YQAQGQA 845
Query: 363 NYDAQRGPNYDIHRGPSYDPQRGLGYDMQ 391
Y + P PQ+ Y Q
Sbjct: 846 GYPGAPATQQP-YPYPQQPPQQQPYYPQQ 873
>UNIPROTKB|O46392 [details] [associations]
symbol:COL1A2 "Collagen alpha-2(I) chain" species:9615
"Canis lupus familiaris" [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005581 "collagen" evidence=IEA] [GO:0005201
"extracellular matrix structural constituent" evidence=IEA]
InterPro:IPR000885 Pfam:PF01410 ProDom:PD002078 PROSITE:PS51461
SMART:SM00038 GO:GO:0046872 GO:GO:0005581 InterPro:IPR008160
Pfam:PF01391 eggNOG:NOG12793 GO:GO:0005201 HOGENOM:HOG000085654
HOVERGEN:HBG004933 KO:K06236 CTD:1278 EMBL:AF035120
RefSeq:NP_001003187.1 UniGene:Cfa.1262 STRING:O46392 GeneID:403824
KEGG:cfa:403824 NextBio:20817320 Uniprot:O46392
Length = 1366
Score = 129 (50.5 bits), Expect = 0.00017, P = 0.00017
Identities = 90/303 (29%), Positives = 110/303 (36%)
Query: 223 RAELMNAPNVDRRAADGSYGGATG-NSENETSGRP--VGQNAYEDGYGVPQGHGPPPSAT 279
R E+ P V GA G +G P G G+P G +
Sbjct: 282 RGEV-GLPGVSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATG 340
Query: 280 TAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGP-GYEASKGPGYDASKA-PSYDPTKG 337
G+VG P + S + G P A P GP G E +GP +A A PS P G
Sbjct: 341 ARGIVGE-PGPAGSKGESGNKGEPGSAGAQGPPGPSGEEGKRGPNGEAGSAGPSGPP--G 397
Query: 338 PSYDP-AKG-PGYDPTKGP-GYDAQKGSNYDAQ-RGPNYDIHRGPSYDPQRGLGYDMQRG 393
P ++G PG D G G +G+ A RGPN D R P +P G RG
Sbjct: 398 LRGSPGSRGLPGADGPAGVMGPPGPRGATGPAGVRGPNGDSGR-PG-EP----GLMGPRG 451
Query: 394 -PNYDMQRGP-GYE-TQRVPGYDVQRGPVYEA--QRAPSYIPQRGP-GYDLQRGQGYDMR 447
P GP G E +PG D + GP+ A + P I GP G G+ D
Sbjct: 452 FPGAPGNVGPAGKEGPMGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKG 511
Query: 448 RAPSYDPSRGT-GFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRG-----GNP 501
A +RG G DG P G G A PP G P G G P
Sbjct: 512 HA-GLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPAGTAGEVGKP 570
Query: 502 ARR 504
R
Sbjct: 571 GER 573
>UNIPROTKB|F1LQ00 [details] [associations]
symbol:Col5a2 "Protein Col5a2" species:10116 "Rattus
norvegicus" [GO:0005201 "extracellular matrix structural
constituent" evidence=IEA] [GO:0005581 "collagen" evidence=IEA]
InterPro:IPR000885 InterPro:IPR001007 Pfam:PF00093 Pfam:PF01410
ProDom:PD002078 PROSITE:PS01208 PROSITE:PS50184 PROSITE:PS51461
SMART:SM00038 SMART:SM00214 RGD:70921 GO:GO:0043588 GO:GO:0030199
GO:GO:0001501 InterPro:IPR008160 Pfam:PF01391 GO:GO:0071230
GO:GO:0005201 GO:GO:0048592 GeneTree:ENSGT00660000095287
GO:GO:0005588 IPI:IPI00366945 Ensembl:ENSRNOT00000005073
Uniprot:F1LQ00
Length = 1467
Score = 129 (50.5 bits), Expect = 0.00019, P = 0.00019
Identities = 88/292 (30%), Positives = 109/292 (37%)
Query: 232 VDRRAADGSYG--GATGNSENETSGRPVGQNAYEDGYGVPQGH-GPPPSATTAGVVGAGP 288
V + A+G+ G GA G + P G E G P+G GPP S G G
Sbjct: 750 VGEKGAEGTAGNDGARGLPGSLGPPGPAGPTG-EKGEPGPRGLVGPPGSRGNPGSRGENG 808
Query: 289 NTSTSAYAATQS--GTP-MRAAYDIPRGPGYEASKGP-GYDASKAPSYDPTKGPSYDPAK 344
T +A Q G P ++ P G S GP G S P + P P +
Sbjct: 809 PTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGP-HGPHGVPGLKGGR 867
Query: 345 GPGYDP--TKGPGYDAQKGSNYDAQR-GPNYDIHRGPSYDPQRGLGYDM-QRGPNYDM-Q 399
G P T PG + G A GP I P + GL D G D
Sbjct: 868 GTQGPPGATGFPGSAGRVGPPGPAGAPGPAGPIGE-PGKEGPPGLRGDPGSHGRVGDRGP 926
Query: 400 RGP-GYETQRV-PGYDVQRGPVYEAQRAPSYIP-QRG-PGYDLQRGQ-GYDMRRAPSYDP 454
GP G + PG D Q GP + P+ QRG G QRG+ G P+ P
Sbjct: 927 AGPPGSPGDKGDPGEDGQPGP--DGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTP 984
Query: 455 SRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGS-GQP-RGGNPARR 504
+ G GA P G V PP +N P G P +G+ G P R G R
Sbjct: 985 GK-VGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGER 1035
>RGD|1311417 [details] [associations]
symbol:Col7a1 "collagen, type VII, alpha 1" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005604 "basement
membrane" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR002035 InterPro:IPR003961 Pfam:PF00041
Pfam:PF00092 PROSITE:PS50234 PROSITE:PS50853 SMART:SM00060
SMART:SM00327 RGD:1311417 Gene3D:2.60.40.10 InterPro:IPR013783
SUPFAM:SSF49265 InterPro:IPR008160 Pfam:PF01391 IPI:IPI00951759
Ensembl:ENSRNOT00000066518 UCSC:RGD:1311417 ArrayExpress:D3ZQ14
Uniprot:D3ZQ14
Length = 2585
Score = 131 (51.2 bits), Expect = 0.00021, P = 0.00021
Identities = 75/262 (28%), Positives = 96/262 (36%)
Query: 254 GRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRG 313
G P G + G P GPP S GV G+ + ++ + R P+G
Sbjct: 1285 GAP-GSTQAKGERGFPGPEGPPGSPGLPGVPGSPGVKGSPGWSGPRGDRGERGPQG-PKG 1342
Query: 314 ----PGYEASKG-PGYDASKAPSYDPTKGPSYDPAK-GPGYDPTKGP-GYDAQKGSNYDA 366
PG G PG K DP GPS P GP DP GP G G++
Sbjct: 1343 EPGEPGQVIGGGRPGLPGKKG---DP--GPSGPPGPHGPLGDP--GPRGPPGLPGTSVKG 1395
Query: 367 QRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRG-PGYETQRVPGYDVQRGPVYEAQRA 425
+G + RGP P G G Q P G PG Q PG ++G + +
Sbjct: 1396 DKGDRGE--RGP---PGPGTGASEQGSPGLPGLPGSPG--PQGPPGRTGEKGEKGDCEDG 1448
Query: 426 PSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGT-GFDGAPRGAAPHGQVPPPLNNVPYGS 484
+P + PG + G +R AP +G G G P G+ PP P G
Sbjct: 1449 GPGLPGQ-PGVPGEPG----LRGAPGVTGPKGDRGLTGTPGEPGEKGERGPPGPVGPQGL 1503
Query: 485 ATPPARSGSGQPRG--GNPARR 504
R G P G G P RR
Sbjct: 1504 PGAAGRPGVEGPEGPPGPPGRR 1525
>WB|WBGene00001263 [details] [associations]
symbol:emb-9 species:6239 "Caenorhabditis elegans"
[GO:0005201 "extracellular matrix structural constituent"
evidence=IEA;TAS] [GO:0005581 "collagen" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040039
"inductive cell migration" evidence=IMP] [GO:0030198 "extracellular
matrix organization" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0050714 "positive regulation of protein
secretion" evidence=IMP] [GO:0007517 "muscle organ development"
evidence=IMP] [GO:0005604 "basement membrane" evidence=IDA]
InterPro:IPR001442 Pfam:PF01413 PROSITE:PS51403 SMART:SM00111
GO:GO:0008340 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 InterPro:IPR016187 SUPFAM:SSF56436
GO:GO:0030198 GO:GO:0000003 GO:GO:0050714 GO:GO:0007517
GO:GO:0040039 GO:GO:0005581 InterPro:IPR008160 Pfam:PF01391
eggNOG:NOG12793 GO:GO:0005604 GO:GO:0005201 HOGENOM:HOG000085652
Gene3D:2.170.240.10 EMBL:X56979 EMBL:Z27078 EMBL:J05067 PIR:S40991
RefSeq:NP_001022662.1 RefSeq:NP_001022663.1
ProteinModelPortal:P17139 SMR:P17139 IntAct:P17139
MINT:MINT-1091171 STRING:P17139 PaxDb:P17139 PRIDE:P17139
EnsemblMetazoa:K04H4.1a GeneID:176314 KEGG:cel:CELE_K04H4.1
UCSC:K04H4.1b CTD:176314 WormBase:K04H4.1a WormBase:K04H4.1b
GeneTree:ENSGT00690000101772 InParanoid:P17139 OMA:EEGIPGC
NextBio:892048 Uniprot:P17139
Length = 1759
Score = 129 (50.5 bits), Expect = 0.00023, P = 0.00023
Identities = 83/301 (27%), Positives = 108/301 (35%)
Query: 223 RAELMNAPNVDRRAADG---SYGGATGNSENETSGRP----VGQNAYEDGY-GVP--QGH 272
+ +L +A +R DG +YG E G P A E GY G P +G
Sbjct: 296 KGDLGDAGQRGKRGKDGVPGNYGEKGSQGEQGLGGTPGYPGTKGGAGEPGYPGRPGFEGD 355
Query: 273 GPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGP-GYEASKG-PGYDASKAP 330
P G AGP+ + Q G + +P GP G G PG A P
Sbjct: 356 CGPEGPLGEGTGEAGPH-GAQGFDGVQGGKGLPGHDGLP-GPVGPRGPVGAPG--APGQP 411
Query: 331 SYDPTKGPSYDPAKGP-GYDPTKG-PGYDAQKGS-NYDAQRG-PNYDIHRGPSYDPQRGL 386
D G + +G GY G PG + G Y + G P YDI P D Q G
Sbjct: 412 GIDGMPGYTEKGDRGEDGYPGFAGEPGLPGEPGDCGYPGEDGLPGYDIQGPPGLDGQSGR 471
Query: 387 -GYDMQRGPNYDMQRGPGYETQR-VPGYDVQR-GP--VYEAQRAPSYIPQR-G-PGYDLQ 439
G+ G D PGY ++ PG V + GP + P +P R G GY
Sbjct: 472 DGFPGIPGDIGD----PGYSGEKGFPGTGVNKVGPPGMTGLPGEPG-MPGRIGVDGYPGP 526
Query: 440 RGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRGG 499
G + Y P G G P +G PP N +G P G + G
Sbjct: 527 PGNNGERGEDCGYCPDGVPGNAGDPGFPGMNGYPGPPGPNGDHGDCGMPGAPGKPRSAGS 586
Query: 500 N 500
+
Sbjct: 587 D 587
>UNIPROTKB|F1MSR8 [details] [associations]
symbol:COL2A1 "Collagen alpha-1(II) chain" species:9913
"Bos taurus" [GO:0005581 "collagen" evidence=IEA] [GO:0005201
"extracellular matrix structural constituent" evidence=IEA]
InterPro:IPR000885 Pfam:PF01410 ProDom:PD002078 PROSITE:PS51461
SMART:SM00038 GO:GO:0005581 InterPro:IPR008160 Pfam:PF01391
GO:GO:0005201 GeneTree:ENSGT00660000095287 KO:K06236
UniGene:Bt.21390 GeneID:407142 KEGG:bta:407142 CTD:1280
NextBio:20818406 EMBL:DAAA02012985 EMBL:DAAA02012986
IPI:IPI00786510 RefSeq:NP_001106695.1 PRIDE:F1MSR8
Ensembl:ENSBTAT00000017509 Uniprot:F1MSR8
Length = 1418
Score = 128 (50.1 bits), Expect = 0.00023, P = 0.00023
Identities = 88/282 (31%), Positives = 102/282 (36%)
Query: 239 GSYGGATGNSENETSGRPVGQNAYEDGYGVP--QGH-GPPPSATTAGVVGAG--PNTSTS 293
G G A N E G P G G P +G GPP A AG GA P
Sbjct: 723 GPPGPAGANGEKGEVGPP-GPAGTAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGE 781
Query: 294 AYAATQSGTPMRAAYDIPRGP-GYEASKGP-GYDASKAP--SYDPTKGPSYDPAKG---- 345
A Q G A P+GP G +GP G K + P + A G
Sbjct: 782 QGEAGQKGD---AGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGP 838
Query: 346 PGYDPTKGP-GYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGY 404
PG + GP G G D +G RG S P R +Q GP GP
Sbjct: 839 PGSNGNPGPPGPPGPSGK--DGPKGA-----RGDSGPPGRAGDPGLQ-GP-----AGPPG 885
Query: 405 ETQRVPGYDVQRGPVYEAQRAPSYIP-QRG-PGYDLQRGQ-GYDMRRAPSYDPSRGTGFD 461
E PG D GP + P + QRG G QRG+ G+ PS +P + G
Sbjct: 886 EKGE-PGDDGPSGP--DGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGK-QGAP 941
Query: 462 GAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRGGNPAR 503
GA P G V PP P G P R GS G P R
Sbjct: 942 GASGDRGPPGPVGPPGLTGPAGE---PGREGS-PGADGPPGR 979
Score = 128 (50.1 bits), Expect = 0.00023, P = 0.00023
Identities = 89/296 (30%), Positives = 112/296 (37%)
Query: 230 PNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATT--AGVVGAG 287
P DR D GA G + G P G G P GPP A + G
Sbjct: 64 PRGDR--GDKGEKGAPGPRGRD--GEP-GTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGF 118
Query: 288 PNTSTSAYAATQSGTPMRAAYDIPRGP-GYEASKGP-GYDASKAPSYDP-TKGPSYDPAK 344
+ A G PM PRGP G + GP G+ + +P GP P +
Sbjct: 119 DEKAGGAQMGVMQG-PMGPMG--PRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPM-GP-R 173
Query: 345 GPGYDPTKGPGYDAQKGS-NYDAQRGP-NYDIHRGPSYDPQRGL-GYDMQRG-PNYDMQR 400
GP P K PG D + G +RGP RG P GL G RG P D +
Sbjct: 174 GPPGPPGK-PGDDGEAGKPGKSGERGPPGPQGARGFPGTP--GLPGVKGHRGYPGLDGAK 230
Query: 401 G----PGYETQR-VPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPS---- 451
G PG + + PG + GP+ + P + GP +G D + P+
Sbjct: 231 GEAGAPGVKGESGSPGENGSPGPM-GPRGLPGERGRTGPA-GAAGARGNDGQPGPAGPPG 288
Query: 452 -YDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATP---PARSGSGQPRG--GNP 501
P+ G GF GAP GA G+ P P G+ P P GS P G GNP
Sbjct: 289 PVGPAGGPGFPGAP-GAK--GEAGPTGARGPEGAQGPRGEPGTPGSPGPAGAAGNP 341
Score = 125 (49.1 bits), Expect = 0.00049, P = 0.00049
Identities = 82/285 (28%), Positives = 105/285 (36%)
Query: 230 PNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGA-GP 288
P R GA GN P G G G P G P + AG GA GP
Sbjct: 260 PGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFP---GAPGAKGEAGPTGARGP 316
Query: 289 NTSTSAYAATQS-GTPMRA-AYDIPRGPGYEASKG----PGYDASKAPSYDPTKGPSYDP 342
+ + G+P A A P G +KG PG + AP + +GP P
Sbjct: 317 EGAQGPRGEPGTPGSPGPAGAAGNPGTDGIPGAKGSAGAPGI--AGAPGFPGPRGP---P 371
Query: 343 AKGP-GYDPTKGP-GYDAQKG-SNYDAQRGPNYDIH-RGPSYDPQRGLGYDMQRGPNYDM 398
GP G GP G + G + + ++GP + GP P G + +RG +
Sbjct: 372 --GPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPA-GEEGKRGARGEP 428
Query: 399 Q-RGP-GYETQR-VPGYDVQRG-PVYEAQRAPSYIP-QRGP-GYDLQRGQGYDMRRAPSY 452
GP G +R PG RG P + P P +RGP G +G D R
Sbjct: 429 GGAGPAGPPGERGAPG---NRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEP 485
Query: 453 DPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGS-GQP 496
G G P A P G+V P G PP G+ GQP
Sbjct: 486 GLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQP 530
>UNIPROTKB|C9JPE6 [details] [associations]
symbol:SLMAP "Sarcolemmal membrane-associated protein"
species:9606 "Homo sapiens" [GO:0006457 "protein folding"
evidence=IEA] [GO:0016272 "prefoldin complex" evidence=IEA]
[GO:0051082 "unfolded protein binding" evidence=IEA]
InterPro:IPR002777 Pfam:PF01920 GO:GO:0006457 GO:GO:0016272
EMBL:AC114480 HGNC:HGNC:16643 ChiTaRS:SLMAP HOGENOM:HOG000072709
EMBL:AC099777 IPI:IPI01019103 ProteinModelPortal:C9JPE6
STRING:C9JPE6 Ensembl:ENST00000442599 UCSC:uc011bez.1
ArrayExpress:C9JPE6 Bgee:C9JPE6 Uniprot:C9JPE6
Length = 296
Score = 119 (46.9 bits), Expect = 0.00023, P = 0.00023
Identities = 50/195 (25%), Positives = 90/195 (46%)
Query: 50 VMEQKIASQHVEMQKLATE-NQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQM 108
+++ ++ H++ + L E + + +T R EL +A+ E+ +LH + SER+ +
Sbjct: 15 LLKAQLQRLHIDTENLREEKDSEITST----RDELLSARDEILLLHQAAAKVASERDTDI 70
Query: 109 RNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ 168
+L E++ K+ AEL+ E++K T QN R Q +D QR +
Sbjct: 71 ASLQEELKKVRAELERWRKAASEYEKEITSLQNSFQLR-------CQQCEDQQR-----E 118
Query: 169 QIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLES-LQVMEKNYITMATEVEKLRAELM 227
+ L ELE LR+E++ T + K N L S LQ EK + +L ++L
Sbjct: 119 EATRLQGELEKLRKEWNALE-TECHSLKRENVLLSSELQRQEKELHNSQKQSLELTSDL- 176
Query: 228 NAPNVDRRAADGSYG 242
+ + R+ + G
Sbjct: 177 SILQMSRKELENQVG 191
>UNIPROTKB|Q8IX94 [details] [associations]
symbol:CTAGE4 "Cutaneous T-cell lymphoma-associated antigen
4" species:9606 "Homo sapiens" [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] GO:GO:0016021
HPA:HPA000387 HPA:HPA000922 HOVERGEN:HBG051216 EMBL:AK292236
EMBL:AC004889 EMBL:AF338232 IPI:IPI00923407 RefSeq:NP_940897.2
UniGene:Hs.645204 UniGene:Hs.661442 UniGene:Hs.720693
ProteinModelPortal:Q8IX94 SMR:Q8IX94 PhosphoSite:Q8IX94
DMDM:229462987 PaxDb:Q8IX94 PRIDE:Q8IX94 Ensembl:ENST00000486333
GeneID:100128553 KEGG:hsa:100128553 UCSC:uc010lpc.3 CTD:100128553
GeneCards:GC07P143880 H-InvDB:HIX0033556 H-InvDB:HIX0151950
H-InvDB:HIX0167845 H-InvDB:HIX0167846 HGNC:HGNC:24772 MIM:608910
neXtProt:NX_Q8IX94 PharmGKB:PA134946406 eggNOG:NOG133684
HOGENOM:HOG000112043 OMA:LERTINF OrthoDB:EOG4WSWC5
GenomeRNAi:100128553 NextBio:20789174 CleanEx:HS_CTAGE4
Genevestigator:Q8IX94 GermOnline:ENSG00000196130 Uniprot:Q8IX94
Length = 777
Score = 125 (49.1 bits), Expect = 0.00024, P = 0.00024
Identities = 106/459 (23%), Positives = 177/459 (38%)
Query: 56 ASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSER---ELQMRNLT 112
A +V ++ L E + + + ++ L Q ++SE E + + L
Sbjct: 322 AKLNVSLKSLEGERNHIIIQLSEVDKTKEELTEHIKNLQTQQASLQSENIYFESENQKLQ 381
Query: 113 EKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPA 172
+K+ K+ E +KL ++K E +N + EE +++V + + RA ++
Sbjct: 382 QKL-KIMTEFYQENEMKL-YRKLTVE-ENYRIEEEEKLSRVEE---KISRATEGLETYRK 435
Query: 173 LLSELES-LRQEYH-HCRGTYEYEKKFYNDHLESLQVMEKNYITMATE----VEKL-RAE 225
L +LE L + H + + YEK+ +++ L + + E+N + E +KL E
Sbjct: 436 LAKDLEEELERTVHFYQKQVISYEKRGHDNWLAA-RTAERNLSDLRKENAHNKQKLTETE 494
Query: 226 L-MNAPNVDRRAADGSYGGATGNSENETSGRPVGQNAYED-GYGVPQGHGPPPSATTAGV 283
L D A D S A G + S P+G+ + E + PQ P + +
Sbjct: 495 LKFELLEKDPNALDVS-NTAFGREHSPCSPSPLGRPSSETRAFPSPQTLLEDPLRLSPVL 553
Query: 284 VGAGPNTSTSAYAATQSGTPMRAAYDIPRG-PGYEA----SKGPGYDASKAPSYDPTKGP 338
G G +S G P+ RG P Y+ + P S + + +
Sbjct: 554 PGGGGRGPSSP------GNPLDHQITNERGEPSYDRLIDPHRAPSDTGSLSSPVEQDRRM 607
Query: 339 SYDPAKGPGY-DPTKGPGYDAQKGSNYDAQRGPNYD-IHRGPSYDPQ-RGLGYDMQRGPN 395
+ P G Y D T P + + SN + GP + S D R + +M+ N
Sbjct: 608 MFPPP-GQSYPDSTLPPQREDRFYSNSERLSGPAEPRSFKMTSLDKMDRSMPSEMESSRN 666
Query: 396 YDMQRGPG---YETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSY 452
D + G +P + GP P P GP + + +G MRR P +
Sbjct: 667 -DAKDDLGNLNVPDSSLPAENEATGP---GLIPPPLAPISGPLFPVDT-RGPFMRRGPPF 721
Query: 453 DPSR-GTGFDGAPRGAAPHGQVPPPLNNVPYGSAT--PP 488
P GT F GA RG P P P + P+ PP
Sbjct: 722 PPPPPGTMF-GASRGYFPPRDFPGP-PHAPFAMRNIYPP 758
>UNIPROTKB|Q9XSK0 [details] [associations]
symbol:CRX "Cone-rod homeobox protein" species:9913 "Bos
taurus" [GO:0060041 "retina development in camera-type eye"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0043522 "leucine
zipper domain binding" evidence=IEA] [GO:0005667 "transcription
factor complex" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] InterPro:IPR001356 InterPro:IPR009057
InterPro:IPR013851 InterPro:IPR017970 Pfam:PF00046 Pfam:PF03529
PROSITE:PS00027 PROSITE:PS50071 SMART:SM00389 GO:GO:0043565
GO:GO:0045944 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667 GO:GO:0060041
EMBL:AF154123 IPI:IPI00695402 RefSeq:NP_776329.1 UniGene:Bt.283
ProteinModelPortal:Q9XSK0 SMR:Q9XSK0 STRING:Q9XSK0 PRIDE:Q9XSK0
Ensembl:ENSBTAT00000028232 GeneID:280756 KEGG:bta:280756 CTD:1406
eggNOG:NOG324074 GeneTree:ENSGT00700000104128 HOGENOM:HOG000082677
HOVERGEN:HBG004028 InParanoid:Q9XSK0 KO:K09337 OMA:QTKARPA
OrthoDB:EOG4NKBWG NextBio:20804923 Uniprot:Q9XSK0
Length = 299
Score = 119 (46.9 bits), Expect = 0.00024, P = 0.00024
Identities = 29/96 (30%), Positives = 42/96 (43%)
Query: 269 PQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASK 328
P P P A AG+V +GP+ +++ YA T + P A P G +S G D
Sbjct: 165 PASESPLPEAQRAGLVASGPSLTSAPYAMTYA--PASAFCSSPSAYGSPSSYFSGLDPYL 222
Query: 329 APSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNY 364
+P P GP+ P GP P+ + G +Y
Sbjct: 223 SPMVPPLGGPALSPLSGPSVGPSLTQSPTSLSGQSY 258
>UNIPROTKB|P02459 [details] [associations]
symbol:COL2A1 "Collagen alpha-1(II) chain" species:9913
"Bos taurus" [GO:0071773 "cellular response to BMP stimulus"
evidence=IEA] [GO:0071599 "otic vesicle development" evidence=IEA]
[GO:0060351 "cartilage development involved in endochondral bone
morphogenesis" evidence=IEA] [GO:0060272 "embryonic skeletal joint
morphogenesis" evidence=IEA] [GO:0060174 "limb bud formation"
evidence=IEA] [GO:0060021 "palate development" evidence=IEA]
[GO:0048407 "platelet-derived growth factor binding" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0042802 "identical protein binding" evidence=IEA]
[GO:0042472 "inner ear morphogenesis" evidence=IEA] [GO:0030903
"notochord development" evidence=IEA] [GO:0030199 "collagen fibril
organization" evidence=IEA] [GO:0010468 "regulation of gene
expression" evidence=IEA] [GO:0007605 "sensory perception of sound"
evidence=IEA] [GO:0007601 "visual perception" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0006029 "proteoglycan metabolic process" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005615 "extracellular
space" evidence=IEA] [GO:0005604 "basement membrane" evidence=IEA]
[GO:0005585 "collagen type II" evidence=IEA] [GO:0003007 "heart
morphogenesis" evidence=IEA] [GO:0002062 "chondrocyte
differentiation" evidence=IEA] [GO:0001958 "endochondral
ossification" evidence=IEA] [GO:0001894 "tissue homeostasis"
evidence=IEA] [GO:0001502 "cartilage condensation" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0005201
"extracellular matrix structural constituent" evidence=IEA]
InterPro:IPR000885 InterPro:IPR001007 Pfam:PF00093 Pfam:PF01410
ProDom:PD002078 PROSITE:PS01208 PROSITE:PS50184 PROSITE:PS51461
SMART:SM00038 SMART:SM00214 GO:GO:0005737 GO:GO:0043066
GO:GO:0005615 GO:GO:0046872 GO:GO:0003007 GO:GO:0007601
GO:GO:0030199 GO:GO:0007417 GO:GO:0042472 GO:GO:0001894
GO:GO:0007605 GO:GO:0071773 InterPro:IPR008160 Pfam:PF01391
eggNOG:NOG12793 GO:GO:0071599 GO:GO:0005604 GO:GO:0001502
GO:GO:0060021 GO:GO:0002062 GO:GO:0010468 GO:GO:0060272
GO:GO:0006029 GO:GO:0001958 GO:GO:0060351 GO:GO:0005201
GeneTree:ENSGT00660000095287 HOGENOM:HOG000085654
HOVERGEN:HBG004933 KO:K06236 EMBL:AAFC03017082 EMBL:AAFC03017085
EMBL:AAFC03056593 EMBL:L28918 EMBL:AF138883 EMBL:AF138957
EMBL:X02420 IPI:IPI01028216 PIR:A90369 PIR:I45876
RefSeq:NP_001001135.2 UniGene:Bt.21390 IntAct:P02459 STRING:P02459
PRIDE:P02459 Ensembl:ENSBTAT00000017505 GeneID:407142
KEGG:bta:407142 CTD:1280 InParanoid:Q9XT25 OMA:SSCRICV
Reactome:REACT_133391 NextBio:20818406 PMAP-CutDB:P02459
ArrayExpress:P02459 GO:GO:0005585 GO:GO:0060174 GO:GO:0030903
Uniprot:P02459
Length = 1487
Score = 128 (50.1 bits), Expect = 0.00025, P = 0.00025
Identities = 88/282 (31%), Positives = 102/282 (36%)
Query: 239 GSYGGATGNSENETSGRPVGQNAYEDGYGVP--QGH-GPPPSATTAGVVGAG--PNTSTS 293
G G A N E G P G G P +G GPP A AG GA P
Sbjct: 792 GPPGPAGANGEKGEVGPP-GPAGTAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGE 850
Query: 294 AYAATQSGTPMRAAYDIPRGP-GYEASKGP-GYDASKAP--SYDPTKGPSYDPAKG---- 345
A Q G A P+GP G +GP G K + P + A G
Sbjct: 851 QGEAGQKGD---AGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGP 907
Query: 346 PGYDPTKGP-GYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGY 404
PG + GP G G D +G RG S P R +Q GP GP
Sbjct: 908 PGSNGNPGPPGPPGPSGK--DGPKGA-----RGDSGPPGRAGDPGLQ-GP-----AGPPG 954
Query: 405 ETQRVPGYDVQRGPVYEAQRAPSYIP-QRG-PGYDLQRGQ-GYDMRRAPSYDPSRGTGFD 461
E PG D GP + P + QRG G QRG+ G+ PS +P + G
Sbjct: 955 EKGE-PGDDGPSGP--DGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGK-QGAP 1010
Query: 462 GAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRGGNPAR 503
GA P G V PP P G P R GS G P R
Sbjct: 1011 GASGDRGPPGPVGPPGLTGPAGE---PGREGS-PGADGPPGR 1048
Score = 128 (50.1 bits), Expect = 0.00025, P = 0.00025
Identities = 89/296 (30%), Positives = 112/296 (37%)
Query: 230 PNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATT--AGVVGAG 287
P DR D GA G + G P G G P GPP A + G
Sbjct: 133 PRGDR--GDKGEKGAPGPRGRD--GEP-GTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGF 187
Query: 288 PNTSTSAYAATQSGTPMRAAYDIPRGP-GYEASKGP-GYDASKAPSYDP-TKGPSYDPAK 344
+ A G PM PRGP G + GP G+ + +P GP P +
Sbjct: 188 DEKAGGAQMGVMQG-PMGPMG--PRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPM-GP-R 242
Query: 345 GPGYDPTKGPGYDAQKGS-NYDAQRGP-NYDIHRGPSYDPQRGL-GYDMQRG-PNYDMQR 400
GP P K PG D + G +RGP RG P GL G RG P D +
Sbjct: 243 GPPGPPGK-PGDDGEAGKPGKSGERGPPGPQGARGFPGTP--GLPGVKGHRGYPGLDGAK 299
Query: 401 G----PGYETQR-VPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPS---- 451
G PG + + PG + GP+ + P + GP +G D + P+
Sbjct: 300 GEAGAPGVKGESGSPGENGSPGPM-GPRGLPGERGRTGPA-GAAGARGNDGQPGPAGPPG 357
Query: 452 -YDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATP---PARSGSGQPRG--GNP 501
P+ G GF GAP GA G+ P P G+ P P GS P G GNP
Sbjct: 358 PVGPAGGPGFPGAP-GAK--GEAGPTGARGPEGAQGPRGEPGTPGSPGPAGAAGNP 410
Score = 125 (49.1 bits), Expect = 0.00052, P = 0.00052
Identities = 82/285 (28%), Positives = 105/285 (36%)
Query: 230 PNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGA-GP 288
P R GA GN P G G G P G P + AG GA GP
Sbjct: 329 PGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFP---GAPGAKGEAGPTGARGP 385
Query: 289 NTSTSAYAATQS-GTPMRA-AYDIPRGPGYEASKG----PGYDASKAPSYDPTKGPSYDP 342
+ + G+P A A P G +KG PG + AP + +GP P
Sbjct: 386 EGAQGPRGEPGTPGSPGPAGAAGNPGTDGIPGAKGSAGAPGI--AGAPGFPGPRGP---P 440
Query: 343 AKGP-GYDPTKGP-GYDAQKG-SNYDAQRGPNYDIH-RGPSYDPQRGLGYDMQRGPNYDM 398
GP G GP G + G + + ++GP + GP P G + +RG +
Sbjct: 441 --GPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPA-GEEGKRGARGEP 497
Query: 399 Q-RGP-GYETQR-VPGYDVQRG-PVYEAQRAPSYIP-QRGP-GYDLQRGQGYDMRRAPSY 452
GP G +R PG RG P + P P +RGP G +G D R
Sbjct: 498 GGAGPAGPPGERGAPG---NRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEP 554
Query: 453 DPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGS-GQP 496
G G P A P G+V P G PP G+ GQP
Sbjct: 555 GLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQP 599
>MGI|MGI:88452 [details] [associations]
symbol:Col2a1 "collagen, type II, alpha 1" species:10090 "Mus
musculus" [GO:0001501 "skeletal system development" evidence=ISO]
[GO:0001502 "cartilage condensation" evidence=IMP] [GO:0001894
"tissue homeostasis" evidence=IMP] [GO:0001958 "endochondral
ossification" evidence=IMP] [GO:0002062 "chondrocyte
differentiation" evidence=IMP] [GO:0003007 "heart morphogenesis"
evidence=IMP] [GO:0005201 "extracellular matrix structural
constituent" evidence=IEA] [GO:0005576 "extracellular region"
evidence=IEA] [GO:0005578 "proteinaceous extracellular matrix"
evidence=IEA] [GO:0005581 "collagen" evidence=IDA] [GO:0005585
"collagen type II" evidence=ISO;IDA;IMP] [GO:0005604 "basement
membrane" evidence=IDA] [GO:0005615 "extracellular space"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006029
"proteoglycan metabolic process" evidence=IMP] [GO:0007601 "visual
perception" evidence=ISO] [GO:0007605 "sensory perception of sound"
evidence=ISO] [GO:0010468 "regulation of gene expression"
evidence=IMP] [GO:0030199 "collagen fibril organization"
evidence=ISO;IMP] [GO:0031012 "extracellular matrix" evidence=IDA]
[GO:0035108 "limb morphogenesis" evidence=IMP] [GO:0042472 "inner
ear morphogenesis" evidence=IMP] [GO:0042802 "identical protein
binding" evidence=IPI] [GO:0043066 "negative regulation of
apoptotic process" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0048407 "platelet-derived growth factor binding"
evidence=ISO] [GO:0048705 "skeletal system morphogenesis"
evidence=IMP] [GO:0048839 "inner ear development" evidence=IMP]
[GO:0051216 "cartilage development" evidence=IMP] [GO:0060021
"palate development" evidence=IMP] [GO:0060272 "embryonic skeletal
joint morphogenesis" evidence=ISO] [GO:0060348 "bone development"
evidence=IMP] [GO:0060351 "cartilage development involved in
endochondral bone morphogenesis" evidence=IMP] [GO:0071773
"cellular response to BMP stimulus" evidence=IDA]
InterPro:IPR000885 InterPro:IPR001007 Pfam:PF00093 Pfam:PF01410
ProDom:PD002078 PROSITE:PS01208 PROSITE:PS50184 PROSITE:PS51461
SMART:SM00038 SMART:SM00214 MGI:MGI:88452 GO:GO:0005737
GO:GO:0043066 GO:GO:0005615 GO:GO:0046872 GO:GO:0003007
GO:GO:0007601 GO:GO:0030199 GO:GO:0007417 GO:GO:0042472
GO:GO:0001894 GO:GO:0007605 GO:GO:0071773 InterPro:IPR008160
Pfam:PF01391 eggNOG:NOG12793 GO:GO:0071599 GO:GO:0005604
GO:GO:0001502 GO:GO:0060021 GO:GO:0002062 GO:GO:0010468
GO:GO:0060272 GO:GO:0006029 GO:GO:0001958 GO:GO:0060351
GO:GO:0005201 GeneTree:ENSGT00660000095287 HOVERGEN:HBG004933
KO:K06236 CTD:1280 OMA:SSCRICV GO:GO:0005585 GO:GO:0060174
GO:GO:0030903 OrthoDB:EOG4FTW1C ChiTaRS:COL2A1 EMBL:M65161
EMBL:BC030913 EMBL:BC051383 EMBL:BC052326 EMBL:BC082331 EMBL:S63190
EMBL:M63708 EMBL:M63709 EMBL:M63710 EMBL:AK028295 EMBL:X57982
IPI:IPI00471183 IPI:IPI00621255 IPI:IPI00622890 IPI:IPI00623625
IPI:IPI00828467 IPI:IPI00828653 IPI:IPI00828753 PIR:A41182
PIR:B41182 RefSeq:NP_001106987.2 RefSeq:NP_112440.2 UniGene:Mm.2423
PDB:2W65 PDBsum:2W65 ProteinModelPortal:P28481 SMR:P28481
IntAct:P28481 STRING:P28481 PhosphoSite:P28481 PRIDE:P28481
Ensembl:ENSMUST00000023123 Ensembl:ENSMUST00000088355 GeneID:12824
KEGG:mmu:12824 UCSC:uc007xlp.2 UCSC:uc007xlq.2 InParanoid:P28481
EvolutionaryTrace:P28481 NextBio:282306 Bgee:P28481
CleanEx:MM_COL2A1 Genevestigator:P28481
GermOnline:ENSMUSG00000022483 Uniprot:P28481
Length = 1487
Score = 128 (50.1 bits), Expect = 0.00025, P = 0.00025
Identities = 82/285 (28%), Positives = 105/285 (36%)
Query: 230 PNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGA-GP 288
P R GA GN P G G G P G P + AG GA GP
Sbjct: 329 PGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFP---GAPGAKGEAGPTGARGP 385
Query: 289 NTSTSAYAATQS-GTPMRAAYDIPRG----PGYEASKG-PGYDASKAPSYDPTKGPSYDP 342
+ + + G+P A G PG + S G PG + AP + +GP P
Sbjct: 386 EGAQGSRGEPGNPGSPGPAGASGNPGTDGIPGAKGSAGAPGI--AGAPGFPGPRGP---P 440
Query: 343 AKGP-GYDPTKGP-GYDAQKG-SNYDAQRGPNYDIH-RGPSYDPQRGLGYDMQRGPNYDM 398
GP G GP G + G + + +GP + GP P G + +RG +
Sbjct: 441 --GPQGATGPLGPKGQAGEPGIAGFKGDQGPKGETGPAGPQGAPGPA-GEEGKRGARGEP 497
Query: 399 Q-RGP-GYETQR-VPGYDVQRG-PVYEAQRAPSYIP-QRGP-GYDLQRGQGYDMRRAPSY 452
GP G +R PG RG P + P P +RGP G +G D R
Sbjct: 498 GGAGPIGPPGERGAPG---NRGFPGQDGLAGPKGAPGERGPSGLTGPKGANGDPGRPGEP 554
Query: 453 DPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGS-GQP 496
G G P A P G+V P G PP G+ GQP
Sbjct: 555 GLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQP 599
Score = 127 (49.8 bits), Expect = 0.00032, P = 0.00032
Identities = 84/290 (28%), Positives = 110/290 (37%)
Query: 243 GATGNSENETSGRPVGQNAYEDGYGVPQGHGPP----PSATTAG-----VVGAGPNTSTS 293
G G+ + + P G++ G P GPP P +AG + G +
Sbjct: 134 GDRGDKGEKGAPGPRGRDGEPGTPGNPGPAGPPGPPGPPGLSAGNFAAQMAGGYDEKAGG 193
Query: 294 AYAATQSGTPMRAAYDIPRGP-GYEASKGP-GYDASKAPSYDP-TKGPSYDPAKGPGYDP 350
A G PM PRGP G + GP G+ + +P GP P PG P
Sbjct: 194 AQMGVMQG-PMGPMG--PRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPM-GPRGPPG--P 247
Query: 351 TKGPGYDAQKGS-NYDAQRG-PNYDIHRGPSYDPQRGL-GYDMQRG-PNYDMQRG----P 402
PG D + G +RG P RG P GL G RG P D +G P
Sbjct: 248 AGKPGDDGEAGKPGKSGERGLPGPQGARGFPGTP--GLPGVKGHRGYPGLDGAKGEAGAP 305
Query: 403 GYETQR-VPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPS-----YDPSR 456
G + + PG + GP+ + P + GP +G D + P+ P+
Sbjct: 306 GVKGESGSPGENGSPGPM-GPRGLPGERGRTGPA-GAAGARGNDGQPGPAGPPGPVGPAG 363
Query: 457 GTGFDGAP--RG-AAPHGQVPPPLNNVPYGSATPPARSGSGQPRG--GNP 501
G GF GAP +G A P G P GS P GS P G GNP
Sbjct: 364 GPGFPGAPGAKGEAGPTGARGP---EGAQGSRGEPGNPGSPGPAGASGNP 410
Score = 126 (49.4 bits), Expect = 0.00041, P = 0.00041
Identities = 89/301 (29%), Positives = 117/301 (38%)
Query: 235 RAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPP-PSATTA--GVVGA-GPNT 290
R A G G G+ + P G + G G+ GPP P+ G VG GP+
Sbjct: 755 RGAAG-IAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPSG 813
Query: 291 STSAYAAT----QSGTPMRAAYDIPRGP-GYEASKGP-GYDASKAPSYDP-TKGPSYDPA 343
ST A A ++G P A + P G G +KG G K + P +GPS P
Sbjct: 814 STGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGDQGEAGQKGDAGAPGPQGPSGAPG 873
Query: 344 -KGP-GYDPTKGP-GYDAQKGSN-YDAQRG----PNYDIHRGPSYDPQRGLGYDMQRGPN 395
+GP G KG G G+ + G P + + GP+ P G D +G
Sbjct: 874 PQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGANGNPGPA-GPPGPAGKDGPKGVR 932
Query: 396 YDM----QRG-PGYETQR-VPGYDVQRG---PV-YEAQRAPSYIP-QRG-PGYDLQRGQ- 442
D + G PG + PG + G P + P + QRG G QRG+
Sbjct: 933 GDSGPPGRAGDPGLQGPAGAPGEKGEPGDDGPSGLDGPPGPQGLAGQRGIVGLPGQRGER 992
Query: 443 GYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRGGNPA 502
G+ PS +P + G GA P G V PP P G P R GS G P
Sbjct: 993 GFPGLPGPSGEPGK-QGAPGASGDRGPPGPVGPPGLTGPAGE---PGREGS-PGADGPPG 1047
Query: 503 R 503
R
Sbjct: 1048 R 1048
>UNIPROTKB|P02458 [details] [associations]
symbol:COL2A1 "Collagen alpha-1(II) chain" species:9606
"Homo sapiens" [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0001502 "cartilage condensation" evidence=IEA] [GO:0001894
"tissue homeostasis" evidence=IEA] [GO:0001958 "endochondral
ossification" evidence=IEA] [GO:0002062 "chondrocyte
differentiation" evidence=IEA] [GO:0003007 "heart morphogenesis"
evidence=IEA] [GO:0005604 "basement membrane" evidence=IEA]
[GO:0005615 "extracellular space" evidence=IEA] [GO:0006029
"proteoglycan metabolic process" evidence=IEA] [GO:0007417 "central
nervous system development" evidence=IEA] [GO:0010468 "regulation
of gene expression" evidence=IEA] [GO:0030903 "notochord
development" evidence=IEA] [GO:0042472 "inner ear morphogenesis"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0060021 "palate development"
evidence=IEA] [GO:0060174 "limb bud formation" evidence=IEA]
[GO:0060351 "cartilage development involved in endochondral bone
morphogenesis" evidence=IEA] [GO:0071599 "otic vesicle development"
evidence=IEA] [GO:0071773 "cellular response to BMP stimulus"
evidence=IEA] [GO:0007601 "visual perception" evidence=IMP]
[GO:0048407 "platelet-derived growth factor binding" evidence=IDA]
[GO:0005576 "extracellular region" evidence=TAS] [GO:0005788
"endoplasmic reticulum lumen" evidence=TAS] [GO:0007411 "axon
guidance" evidence=TAS] [GO:0030198 "extracellular matrix
organization" evidence=TAS] [GO:0042802 "identical protein binding"
evidence=NAS] [GO:0001501 "skeletal system development"
evidence=IMP] [GO:0007605 "sensory perception of sound"
evidence=IMP] [GO:0060272 "embryonic skeletal joint morphogenesis"
evidence=IMP] [GO:0051216 "cartilage development" evidence=TAS]
[GO:0030199 "collagen fibril organization" evidence=IMP]
[GO:0005585 "collagen type II" evidence=IDA] [GO:0030020
"extracellular matrix structural constituent conferring tensile
strength" evidence=IC] InterPro:IPR000885 InterPro:IPR001007
Pfam:PF00093 Pfam:PF01410 ProDom:PD002078 PROSITE:PS01208
PROSITE:PS50184 PROSITE:PS51461 SMART:SM00038 SMART:SM00214
Reactome:REACT_118779 Reactome:REACT_111045 Reactome:REACT_111102
GO:GO:0007411 GO:GO:0043066 GO:GO:0005615 PDB:2FSE PDBsum:2FSE
PDB:2SEB PDBsum:2SEB GO:GO:0046872 GO:GO:0003007 GO:GO:0007601
GO:GO:0030199 GO:GO:0007417 GO:GO:0005788 GO:GO:0042472
GO:GO:0001894 GO:GO:0042802 GO:GO:0007605 GO:GO:0071773
GO:GO:0051216 InterPro:IPR008160 Pfam:PF01391 eggNOG:NOG12793
GO:GO:0071599 GO:GO:0005604 GO:GO:0001502 GO:GO:0060021
GO:GO:0002062 GO:GO:0010468 GO:GO:0060272 GO:GO:0006029
GO:GO:0001958 GO:GO:0060351 HOVERGEN:HBG004933 KO:K06236
DrugBank:DB00048 GO:GO:0048407 CTD:1280 OMA:SSCRICV GO:GO:0005585
GO:GO:0060174 GO:GO:0030903 OrthoDB:EOG4FTW1C EMBL:X16468
EMBL:L10347 EMBL:BT007205 EMBL:AC004801 EMBL:BC007252 EMBL:BC116449
EMBL:X16711 EMBL:M25730 EMBL:M32168 EMBL:M25655 EMBL:M25656
EMBL:M64345 EMBL:M60299 EMBL:M25698 EMBL:X58709 EMBL:X57010
EMBL:U15195 EMBL:X13783 EMBL:M25728 EMBL:X02371 EMBL:X02372
EMBL:X02373 EMBL:X02374 EMBL:X02375 EMBL:X02376 EMBL:X02377
EMBL:X02378 EMBL:X16158 EMBL:J00116 EMBL:L00977 EMBL:M63281
EMBL:M27468 EMBL:X06268 EMBL:X00339 EMBL:M12048 IPI:IPI00186460
IPI:IPI00748487 IPI:IPI00936892 PIR:A38513 RefSeq:NP_001835.3
RefSeq:NP_149162.2 UniGene:Hs.408182 PDB:1U5M PDBsum:1U5M
ProteinModelPortal:P02458 SMR:P02458 IntAct:P02458
MINT:MINT-6796075 STRING:P02458 PhosphoSite:P02458 DMDM:124056489
PaxDb:P02458 PRIDE:P02458 DNASU:1280 Ensembl:ENST00000337299
Ensembl:ENST00000380518 GeneID:1280 KEGG:hsa:1280 UCSC:uc001rqt.3
UCSC:uc001rqu.3 UCSC:uc001rqv.3 GeneCards:GC12M048266
HGNC:HGNC:2200 HPA:CAB002214 MIM:108300 MIM:120140 MIM:132450
MIM:150600 MIM:151210 MIM:156550 MIM:183900 MIM:184250 MIM:200610
MIM:271700 MIM:604864 MIM:608805 MIM:609162 MIM:609508
neXtProt:NX_P02458 Orphanet:93296 Orphanet:209867 Orphanet:137678
Orphanet:86820 Orphanet:93297 Orphanet:485 Orphanet:2380
Orphanet:93279 Orphanet:166011 Orphanet:1427 Orphanet:85166
Orphanet:93346 Orphanet:94068 Orphanet:93315 Orphanet:1856
Orphanet:90653 PharmGKB:PA26715 ChiTaRS:COL2A1
EvolutionaryTrace:P02458 GenomeRNAi:1280 NextBio:5171
PMAP-CutDB:P02458 Bgee:P02458 Genevestigator:P02458
GermOnline:ENSG00000139219 GO:GO:0030020 Uniprot:P02458
Length = 1487
Score = 128 (50.1 bits), Expect = 0.00025, P = 0.00025
Identities = 90/296 (30%), Positives = 113/296 (38%)
Query: 230 PNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATT--AGVVGAG 287
P DR D GA G + G P G G P GPP A + G
Sbjct: 133 PRGDR--GDKGEKGAPGPRGRD--GEP-GTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGF 187
Query: 288 PNTSTSAYAATQSGTPMRAAYDIPRGP-GYEASKGP-GYDASKAPSYDP-TKGPSYDPAK 344
+ A G PM PRGP G + GP G+ + +P GP P +
Sbjct: 188 DEKAGGAQLGVMQG-PMGPMG--PRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPM-GP-R 242
Query: 345 GPGYDPTKGPGYDAQKGSNYDA-QRGP-NYDIHRGPSYDPQRGL-GYDMQRG-PNYDMQR 400
GP P K PG D + G A +RGP RG P GL G RG P D +
Sbjct: 243 GPPGPPGK-PGDDGEAGKPGKAGERGPPGPQGARGFPGTP--GLPGVKGHRGYPGLDGAK 299
Query: 401 G----PGYETQR-VPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPS---- 451
G PG + + PG + GP+ + P + GP +G D + P+
Sbjct: 300 GEAGAPGVKGESGSPGENGSPGPM-GPRGLPGERGRTGPA-GAAGARGNDGQPGPAGPPG 357
Query: 452 -YDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATP---PARSGSGQPRG--GNP 501
P+ G GF GAP GA G+ P P G+ P P GS P G GNP
Sbjct: 358 PVGPAGGPGFPGAP-GAK--GEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNP 410
Score = 125 (49.1 bits), Expect = 0.00052, P = 0.00052
Identities = 82/285 (28%), Positives = 105/285 (36%)
Query: 230 PNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGA-GP 288
P R GA GN P G G G P G P + AG GA GP
Sbjct: 329 PGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFP---GAPGAKGEAGPTGARGP 385
Query: 289 NTSTSAYAATQS-GTPMRAAYDIPRG----PGYEASKG-PGYDASKAPSYDPTKGPSYDP 342
+ + G+P A G PG + S G PG + AP + +GP P
Sbjct: 386 EGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGI--AGAPGFPGPRGP---P 440
Query: 343 AKGP-GYDPTKGP-GYDAQKG-SNYDAQRGPNYDIH-RGPSYDPQRGLGYDMQRGPNYDM 398
GP G GP G + G + + ++GP + GP P G + +RG +
Sbjct: 441 --GPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPA-GEEGKRGARGEP 497
Query: 399 QR-GP-GYETQR-VPGYDVQRG-PVYEAQRAPSYIP-QRGP-GYDLQRGQGYDMRRAPSY 452
GP G +R PG RG P + P P +RGP G +G D R
Sbjct: 498 GGVGPIGPPGERGAPG---NRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEP 554
Query: 453 DPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGS-GQP 496
G G P A P G+V P G PP G+ GQP
Sbjct: 555 GLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQP 599
Score = 124 (48.7 bits), Expect = 0.00067, P = 0.00067
Identities = 88/282 (31%), Positives = 101/282 (35%)
Query: 239 GSYGGATGNSENETSGRPVGQNAYEDGYGVP--QGH-GPPPSATTAGVVGAG--PNTSTS 293
G G A N E G P G G P +G GPP A AG GA P
Sbjct: 792 GPPGPAGANGEKGEVGPP-GPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGE 850
Query: 294 AYAATQSGTPMRAAYDIPRGP-GYEASKGP-GYDASKAP--SYDPTKGPSYDPAKG---- 345
A Q G A P+GP G +GP G K + P + A G
Sbjct: 851 QGEAGQKGD---AGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGP 907
Query: 346 PGYDPTKGP-GYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGY 404
PG + GP G G D +G RG S P R G +GP GP
Sbjct: 908 PGSNGNPGPPGPPGPSGK--DGPKGA-----RGDSGPPGRA-GEPGLQGP-----AGPPG 954
Query: 405 ETQRVPGYDVQRGPVYEAQRAPSYIP-QRG-PGYDLQRGQ-GYDMRRAPSYDPSRGTGFD 461
E PG D G E P + QRG G QRG+ G+ PS +P + G
Sbjct: 955 EKGE-PGDDGPSGA--EGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGK-QGAP 1010
Query: 462 GAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRGGNPAR 503
GA P G V PP P G P R GS G P R
Sbjct: 1011 GASGDRGPPGPVGPPGLTGPAGE---PGREGS-PGADGPPGR 1048
>UNIPROTKB|F1PS24 [details] [associations]
symbol:COL2A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071773 "cellular response to BMP stimulus"
evidence=IEA] [GO:0071599 "otic vesicle development" evidence=IEA]
[GO:0060351 "cartilage development involved in endochondral bone
morphogenesis" evidence=IEA] [GO:0060272 "embryonic skeletal joint
morphogenesis" evidence=IEA] [GO:0060174 "limb bud formation"
evidence=IEA] [GO:0060021 "palate development" evidence=IEA]
[GO:0048407 "platelet-derived growth factor binding" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0042802 "identical protein binding" evidence=IEA]
[GO:0042472 "inner ear morphogenesis" evidence=IEA] [GO:0030903
"notochord development" evidence=IEA] [GO:0030199 "collagen fibril
organization" evidence=IEA] [GO:0010468 "regulation of gene
expression" evidence=IEA] [GO:0007605 "sensory perception of sound"
evidence=IEA] [GO:0007601 "visual perception" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0006029 "proteoglycan metabolic process" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005615 "extracellular
space" evidence=IEA] [GO:0005604 "basement membrane" evidence=IEA]
[GO:0005585 "collagen type II" evidence=IEA] [GO:0003007 "heart
morphogenesis" evidence=IEA] [GO:0002062 "chondrocyte
differentiation" evidence=IEA] [GO:0001958 "endochondral
ossification" evidence=IEA] [GO:0001894 "tissue homeostasis"
evidence=IEA] [GO:0001502 "cartilage condensation" evidence=IEA]
[GO:0005201 "extracellular matrix structural constituent"
evidence=IEA] InterPro:IPR000885 InterPro:IPR001007 Pfam:PF00093
Pfam:PF01410 ProDom:PD002078 PROSITE:PS01208 PROSITE:PS50184
PROSITE:PS51461 SMART:SM00038 SMART:SM00214 GO:GO:0005737
GO:GO:0043066 GO:GO:0005615 GO:GO:0003007 GO:GO:0007601
GO:GO:0030199 GO:GO:0007417 GO:GO:0042472 GO:GO:0001894
GO:GO:0007605 GO:GO:0071773 InterPro:IPR008160 Pfam:PF01391
GO:GO:0071599 GO:GO:0005604 GO:GO:0001502 GO:GO:0060021
GO:GO:0002062 GO:GO:0010468 GO:GO:0060272 GO:GO:0006029
GO:GO:0001958 GO:GO:0060351 GO:GO:0005201
GeneTree:ENSGT00660000095287 GO:GO:0005585 GO:GO:0060174
GO:GO:0030903 EMBL:AAEX03015088 EMBL:AAEX03015089
Ensembl:ENSCAFT00000014414 OMA:CPICPTE Uniprot:F1PS24
Length = 1489
Score = 128 (50.1 bits), Expect = 0.00025, P = 0.00025
Identities = 88/282 (31%), Positives = 102/282 (36%)
Query: 239 GSYGGATGNSENETSGRPVGQNAYEDGYGVP--QGH-GPPPSATTAGVVGAG--PNTSTS 293
G G A N E G P G G P +G GPP A AG GA P
Sbjct: 794 GPPGPAGANGEKGEVGPP-GPAGTAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGE 852
Query: 294 AYAATQSGTPMRAAYDIPRGP-GYEASKGP-GYDASKAP--SYDPTKGPSYDPAKG---- 345
A Q G A P+GP G +GP G K + P + A G
Sbjct: 853 QGEAGQKGD---AGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGP 909
Query: 346 PGYDPTKGP-GYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGY 404
PG + GP G G D +G RG S P R +Q GP GP
Sbjct: 910 PGSNGNPGPPGPPGPSGK--DGPKGA-----RGDSGPPGRAGDPGLQ-GP-----AGPPG 956
Query: 405 ETQRVPGYDVQRGPVYEAQRAPSYIP-QRG-PGYDLQRGQ-GYDMRRAPSYDPSRGTGFD 461
E PG D GP + P + QRG G QRG+ G+ PS +P + G
Sbjct: 957 EKGE-PGDDGPSGP--DGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGK-QGAP 1012
Query: 462 GAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRGGNPAR 503
GA P G V PP P G P R GS G P R
Sbjct: 1013 GASGDRGPPGPVGPPGLTGPSGE---PGREGS-PGADGPPGR 1050
Score = 125 (49.1 bits), Expect = 0.00052, P = 0.00052
Identities = 72/271 (26%), Positives = 92/271 (33%)
Query: 239 GSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAA- 297
G G + G P G + G P GPP G G G N +
Sbjct: 130 GEQGPRGDRGDKGEKGAP-GPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGF 188
Query: 298 -TQSGTPMRAAYDIPRGP-GYEASKGPGYDASKAPSYDPTKGPSYDPA-KGPGYDPTKGP 354
++G P GP G GP A + G +P GP P P
Sbjct: 189 DEKAGGAQMGVMQGPMGPMGPRGPPGPA-GAPGPQGFQGNPGEPGEPGVSGP-MGPRGPP 246
Query: 355 GYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRG-PNYDMQRG-PGYETQR---- 408
G + G + +A + P RGP PQ G+ G P RG PG + +
Sbjct: 247 GPPGKPGDDGEAGK-PGKSGERGPP-GPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAG 304
Query: 409 VPGYDVQRGPVYEAQRAPSYIPQRG-PGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGA 467
PG + G E +P + RG PG +RG R P+ + G DG P A
Sbjct: 305 APGVKGESGSPGE-NGSPGPMGPRGLPG---ERG-----RTGPA-GAAGARGNDGQPGPA 354
Query: 468 APHGQVPPPLNNVPYGSATPPARSGSGQPRG 498
P G V P P P A G P G
Sbjct: 355 GPPGPVSPA--GGPGFPGAPGASQGEAGPTG 383
Score = 125 (49.1 bits), Expect = 0.00052, P = 0.00052
Identities = 83/285 (29%), Positives = 106/285 (37%)
Query: 230 PNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGA-GP 288
P R GA GN P G + G G P G P S AG GA GP
Sbjct: 330 PGERGRTGPAGAAGARGNDGQPGPAGPPGPVSPAGGPGFP-G-APGASQGEAGPTGARGP 387
Query: 289 NTSTSAYAATQS-GTPMRAAYDIPRG----PGYEASKG-PGYDASKAPSYDPTKGPSYDP 342
+ + G+P A G PG + S G PG + AP + +GP P
Sbjct: 388 EGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGI--AGAPGFPGPRGP---P 442
Query: 343 AKGP-GYDPTKGP-GYDAQKG-SNYDAQRGPNYDIH-RGPSYDPQRGLGYDMQRGPNYDM 398
GP G GP G + G + + ++GP + GP P G + +RG +
Sbjct: 443 --GPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPA-GEEGKRGARGEP 499
Query: 399 Q-RGP-GYETQR-VPGYDVQRG-PVYEAQRAPSYIP-QRGP-GYDLQRGQGYDMRRAPSY 452
GP G +R PG RG P + P P +RGP G +G D R
Sbjct: 500 GGAGPVGPPGERGAPG---NRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEP 556
Query: 453 DPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGS-GQP 496
G G P A P G+V P G PP G+ GQP
Sbjct: 557 GLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQP 601
Score = 123 (48.4 bits), Expect = 0.00086, P = 0.00086
Identities = 84/287 (29%), Positives = 107/287 (37%)
Query: 236 AADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGH-GPPPSATTAGVVGAGPNTSTSA 294
A + GA G S+ E P G E G P+G G P S AG G P T
Sbjct: 363 AGGPGFPGAPGASQGEAG--PTGARGPEGAQG-PRGEPGTPGSPGPAGASG-NPGTDGIP 418
Query: 295 YAATQSGTPMRAA---YDIPRGP-GYEASKGP----GYDASKA-PSYDPTKGPSYDPAKG 345
A +G P A + PRGP G + + GP G + +GP +P G
Sbjct: 419 GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEP--G 476
Query: 346 PGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDP-QRGLGYDMQRG-PNYDMQRGP- 402
P P PG ++G A+ P GP P +RG + RG P D GP
Sbjct: 477 PA-GPQGAPGPAGEEGKR-GARGEPG---GAGPVGPPGERGAPGN--RGFPGQDGLAGPK 529
Query: 403 GYETQRVPGYDVQRGPVYEAQRAPSYIPQRG-PGYDLQRGQGYDMRRAPSYDPSRGTGFD 461
G +R P GP A P + G PG G+ D PS G D
Sbjct: 530 GAPGERGPSG--LAGPK-GANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGED 586
Query: 462 GAPRGAAPHG-QVPPPLNNVP--YGSATPPARSGS-GQPRGGNPARR 504
G P P G + P + P G+ P ++G G P G P R
Sbjct: 587 GRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLP--GAPGLR 631
>UNIPROTKB|Q14BN4 [details] [associations]
symbol:SLMAP "Sarcolemmal membrane-associated protein"
species:9606 "Homo sapiens" [GO:0006457 "protein folding"
evidence=IEA] [GO:0016272 "prefoldin complex" evidence=IEA]
[GO:0051082 "unfolded protein binding" evidence=IEA] [GO:0005815
"microtubule organizing center" evidence=IEA] [GO:0042383
"sarcolemma" evidence=IEA] [GO:0005790 "smooth endoplasmic
reticulum" evidence=TAS] [GO:0005887 "integral to plasma membrane"
evidence=TAS] [GO:0006936 "muscle contraction" evidence=TAS]
InterPro:IPR000253 InterPro:IPR002777 InterPro:IPR008984
Pfam:PF00498 Pfam:PF01920 PROSITE:PS50006 SMART:SM00240
GO:GO:0006457 GO:GO:0005887 Gene3D:2.60.200.20 SUPFAM:SSF49879
GO:GO:0005815 GO:GO:0042383 GO:GO:0006936 GO:GO:0016272
GO:GO:0005790 eggNOG:COG1716 EMBL:AF304450 EMBL:AF100750
EMBL:AY358410 EMBL:AK124200 EMBL:AL834538 EMBL:CR627321
EMBL:BC114627 EMBL:BC115701 EMBL:AB046821 IPI:IPI00026691
IPI:IPI00030531 IPI:IPI00432472 IPI:IPI00446339 IPI:IPI00791574
IPI:IPI00794462 IPI:IPI00794566 IPI:IPI00795406 RefSeq:NP_009090.2
UniGene:Hs.476432 ProteinModelPortal:Q14BN4 SMR:Q14BN4
IntAct:Q14BN4 STRING:Q14BN4 PhosphoSite:Q14BN4 DMDM:118597508
PaxDb:Q14BN4 PRIDE:Q14BN4 Ensembl:ENST00000295951
Ensembl:ENST00000295952 Ensembl:ENST00000383718
Ensembl:ENST00000416870 Ensembl:ENST00000428312
Ensembl:ENST00000449503 GeneID:7871 KEGG:hsa:7871 UCSC:uc003djc.1
UCSC:uc003djd.1 UCSC:uc003dje.1 UCSC:uc003djf.1 UCSC:uc003djg.1
UCSC:uc003djh.3 UCSC:uc003dji.1 CTD:7871 GeneCards:GC03P057802
H-InvDB:HIX0003396 HGNC:HGNC:16643 HPA:HPA002357 HPA:HPA002358
MIM:602701 neXtProt:NX_Q14BN4 PharmGKB:PA38179 HOVERGEN:HBG082442
OMA:RTSKQKC ChiTaRS:SLMAP GenomeRNAi:7871 NextBio:30324
ArrayExpress:Q14BN4 Bgee:Q14BN4 Genevestigator:Q14BN4
Uniprot:Q14BN4
Length = 828
Score = 125 (49.1 bits), Expect = 0.00026, P = 0.00026
Identities = 51/196 (26%), Positives = 91/196 (46%)
Query: 49 EVMEQKIASQHVEMQKLATE-NQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQ 107
+V++ ++ H++ + L E + + +T R EL +A+ E+ +LH + SER+
Sbjct: 546 QVLQAQLQRLHIDTENLREEKDSEITST----RDELLSARDEILLLHQAAAKVASERDTD 601
Query: 108 MRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDV 167
+ +L E++ K+ AEL+ E++K T QN R Q +D QR
Sbjct: 602 IASLQEELKKVRAELERWRKAASEYEKEITSLQNSFQLR-------CQQCEDQQR----- 649
Query: 168 QQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLES-LQVMEKNYITMATEVEKLRAEL 226
++ L ELE LR+E++ T + K N L S LQ EK + +L ++L
Sbjct: 650 EEATRLQGELEKLRKEWNALE-TECHSLKRENVLLSSELQRQEKELHNSQKQSLELTSDL 708
Query: 227 MNAPNVDRRAADGSYG 242
+ + R+ + G
Sbjct: 709 -SILQMSRKELENQVG 723
>UNIPROTKB|E1BF47 [details] [associations]
symbol:TPR "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0031965 "nuclear membrane" evidence=IEA] [GO:0007094
"mitotic spindle assembly checkpoint" evidence=IEA] [GO:0005643
"nuclear pore" evidence=IEA] [GO:0000776 "kinetochore"
evidence=IEA] [GO:0006606 "protein import into nucleus"
evidence=IEA] [GO:0006434 "seryl-tRNA aminoacylation" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004828 "serine-tRNA ligase activity"
evidence=IEA] InterPro:IPR012929 InterPro:IPR015866 Pfam:PF07926
GO:GO:0005524 GO:GO:0005737 GO:GO:0000776 GO:GO:0007094
GO:GO:0031965 GO:GO:0005643 GO:GO:0006606 KO:K09291
InterPro:IPR009053 SUPFAM:SSF46579 GeneTree:ENSGT00700000104019
GO:GO:0004828 GO:GO:0006434 Gene3D:1.10.287.40 CTD:7175 OMA:RFIRREK
EMBL:DAAA02043627 IPI:IPI00694835 RefSeq:NP_001192552.1
UniGene:Bt.1386 Ensembl:ENSBTAT00000015848 GeneID:507869
KEGG:bta:507869 NextBio:20868255 Uniprot:E1BF47
Length = 2360
Score = 124 (48.7 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 43/187 (22%), Positives = 87/187 (46%)
Query: 48 PEVME-QKIASQ---HVE-MQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS 102
P+ E +K+ S+ H + +Q+L E RL A L Q+ +Q L + +++
Sbjct: 1347 PDTEEYRKLLSEKEVHTKRIQQLTEELGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRT 1406
Query: 103 ERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR 162
E+E + L KI ++ ++KT VK ++ KT+ + L +++++ Q + D Q
Sbjct: 1407 EKENIQKELDAKIIDIQEKVKTITQVKKIGRRYKTQYEELKAQQDKVMETSAQSSGDHQE 1466
Query: 163 AHTDVQQIPALLSELESLRQEYHHCRGTYE-YEKKFYNDHLESLQVMEKNYITMATEVEK 221
H VQ++ L L + E +K +E+ + E+ + + +E+ +
Sbjct: 1467 QHVSVQEMQELKETLSQAETKSKSLENQVENLQKTLSEKEIEARSLQEQT-LELQSELAR 1525
Query: 222 LRAELMN 228
LR +L +
Sbjct: 1526 LRQDLQD 1532
Score = 57 (25.1 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 17/54 (31%), Positives = 22/54 (40%)
Query: 243 GATGNSENETSGRPVGQNAYE--DGYGVPQGHGPPPSATTAGVVGAGPNTSTSA 294
G G NE +G G + YE D G G G P T +G G + +A
Sbjct: 1979 GDEGEDSNEGTGSADGNDGYEADDAEG---GDGTDPGTETEESMGGGESNQRAA 2029
>UNIPROTKB|F1SEN8 [details] [associations]
symbol:LDB3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030018 "Z disc" evidence=IEA] [GO:0008092
"cytoskeletal protein binding" evidence=IEA] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0005080 "protein kinase C binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00595 Pfam:PF00412 InterPro:IPR001478 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50106 SMART:SM00132
SMART:SM00228 GO:GO:0030018 GO:GO:0005856 GO:GO:0046872
GO:GO:0008270 Gene3D:2.10.110.10 SUPFAM:SSF50156 CTD:11155
OMA:CTSQATT InterPro:IPR006643 SMART:SM00735
GeneTree:ENSGT00700000104411 EMBL:CU468409 RefSeq:XP_003359314.1
UniGene:Ssc.97236 Ensembl:ENSSSCT00000011341 GeneID:100151883
KEGG:ssc:100151883 Uniprot:F1SEN8
Length = 715
Score = 124 (48.7 bits), Expect = 0.00028, P = 0.00028
Identities = 50/192 (26%), Positives = 69/192 (35%)
Query: 244 ATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGP----NTSTSAYAATQ 299
AT ++ S Y P P+A T A P T+A
Sbjct: 344 ATASAAAPASSPADSPRPQASAYSPAVATSPAPAAHTYSEAPAAPAPKPRVVTTASIRPS 403
Query: 300 SGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQ 359
P+ A+ P PG S P Y S AP+Y P+ P+Y P+ P Y P+ P Y+
Sbjct: 404 VYQPVPASTYSP-SPGANYSPTP-YTPSPAPAYTPSPAPTYSPSPAPAYTPSPAPSYNPT 461
Query: 360 KGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRG-PGYETQRVPGYDVQ--- 415
S A+ S+ + G + RG P Y T + G V
Sbjct: 462 PYSGGPAESASRPPWVTDDSFSQKFAPGKSTTSISKQSLPRGAPAY-TPPLQGPQVSPLA 520
Query: 416 RGPVYEAQRAPS 427
RG V A+R P+
Sbjct: 521 RGTVQRAERFPA 532
>RGD|1311620 [details] [associations]
symbol:Zmiz1 "zinc finger, MIZ-type containing 1" species:10116
"Rattus norvegicus" [GO:0001570 "vasculogenesis" evidence=IEA;ISO]
[GO:0001701 "in utero embryonic development" evidence=IEA;ISO]
[GO:0003007 "heart morphogenesis" evidence=IEA;ISO] [GO:0007296
"vitellogenesis" evidence=IEA;ISO] [GO:0007569 "cell aging"
evidence=IEA;ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0048146 "positive
regulation of fibroblast proliferation" evidence=IEA;ISO]
[GO:0048589 "developmental growth" evidence=IEA;ISO] [GO:0048844
"artery morphogenesis" evidence=IEA;ISO] InterPro:IPR004181
Pfam:PF02891 PROSITE:PS51044 RGD:1311620 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 GeneTree:ENSGT00550000074410
CTD:57178 OMA:MNQYGPM OrthoDB:EOG45MN70 EMBL:CH474067
IPI:IPI00364462 RefSeq:NP_001101863.1 UniGene:Rn.1712
Ensembl:ENSRNOT00000014004 GeneID:361103 KEGG:rno:361103
UCSC:RGD:1311620 NextBio:675228 Uniprot:D4AE97
Length = 1072
Score = 126 (49.4 bits), Expect = 0.00028, P = 0.00028
Identities = 66/233 (28%), Positives = 87/233 (37%)
Query: 287 GPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYD-ASKAPSYDPT--KGP--SYD 341
GP S+ TQ+ PRGP AS G + AS A P+ GP +
Sbjct: 318 GPVCSSFQMGPTQAYNSQFMNQPGPRGP---ASMGGSMNPASMAAGMTPSGMSGPPMGMN 374
Query: 342 PAKGPGYDP--TKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQ 399
+ PG P T G Q Q P I R +P G + Q GPN
Sbjct: 375 QPRPPGISPFGTHGQRMPQQTYPGPRPQSLPIQSIKRSYPGEPNYG---NQQYGPNSQFP 431
Query: 400 RGPG-YETQRVPGYDVQRGPVYEAQRAPSYIPQRG--PGYDLQRGQGYDMRRAPSYDP-- 454
PG Y T P P Y QR PS P G P + GQ Y + +
Sbjct: 432 TQPGQYPTPNPPR--PLTSPNYPGQRMPSQ-PSTGQYPPPTVNMGQYYKPEQFNGQNNTF 488
Query: 455 SRGTGFDGAPRGAAPHGQVPPPLNNVPY----GSATPPARSGSGQPRGGNPAR 503
S G+ + +G+ P P+ N P+ G+ TPP GS P +P++
Sbjct: 489 SSGSSYSSYSQGSVNRPPRPVPVANYPHSPVPGNPTPPMTPGSSIPPYLSPSQ 541
>ZFIN|ZDB-GENE-030131-2281 [details] [associations]
symbol:col4a5 "collagen, type IV, alpha 5 (Alport
syndrome)" species:7955 "Danio rerio" [GO:0005201 "extracellular
matrix structural constituent" evidence=IEA] [GO:0005581 "collagen"
evidence=IEA] [GO:0031290 "retinal ganglion cell axon guidance"
evidence=IMP] [GO:0007412 "axon target recognition" evidence=IMP]
[GO:0030198 "extracellular matrix organization" evidence=IMP]
InterPro:IPR001442 Pfam:PF01413 PROSITE:PS51403 SMART:SM00111
ZFIN:ZDB-GENE-030131-2281 InterPro:IPR016187 SUPFAM:SSF56436
GO:GO:0030198 GO:GO:0005581 InterPro:IPR008160 Pfam:PF01391
eggNOG:NOG12793 GO:GO:0007412 GO:GO:0031290 GO:GO:0005201
HOVERGEN:HBG004933 HOGENOM:HOG000085652 OrthoDB:EOG45DWPF
Gene3D:2.170.240.10 GeneTree:ENSGT00690000101772 KO:K06237 CTD:1287
OMA:MPMNMEP EMBL:CR354588 EMBL:CR936978 IPI:IPI00835382
RefSeq:NP_001116702.1 UniGene:Dr.77841 SMR:B0UXF7
Ensembl:ENSDART00000073827 GeneID:323561 KEGG:dre:323561
NextBio:20808319 Uniprot:B0UXF7
Length = 1659
Score = 128 (50.1 bits), Expect = 0.00028, P = 0.00028
Identities = 86/286 (30%), Positives = 101/286 (35%)
Query: 234 RRAADGSYG--GATGNSENETSGR-PVGQNAYEDGYGVPQGHGPPPSATTAGVVGA-G-P 288
R A G G G G + E R P GQ+ G P GPP G+ G+ G P
Sbjct: 637 RPGAPGLPGQKGEPGMTVPEVGERGPPGQDGDPGSQGRPGDSGPPGQPGFPGLPGSKGEP 696
Query: 289 NTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKA-PSYDPTKG-PSYDPAKGP 346
P GPG PG D P +KG P Y P
Sbjct: 697 GLPGIGLPGPPGAKGFPGIAGSPGGPGIPGR--PGLDGLPGQPGLPGSKGDPGYGLPGPP 754
Query: 347 GYDPTKGPGYDAQKGSNYDAQRGPNYDI-HRGPSYDPQRGLGYDMQRGPNYD--MQRGPG 403
G PT PG KG GP D G P R G D GP D GPG
Sbjct: 755 G--PTGSPGI---KGGP-----GPKGDSGFPGSPGQPGRP-GLDGAPGPKGDAGFPGGPG 803
Query: 404 YE-TQRVPGYDVQRGPVYEAQRAPSYIPQRG-PGYDLQRG-QGYDMRRAPSYDPSRG-TG 459
P + +Q GP AP I G PG + ++G +G P + RG +G
Sbjct: 804 PRGPPGAPAFGLQ-GPP-GPPGAPGSIGSPGVPGANGEKGDRGPPGLSTPGFQGDRGISG 861
Query: 460 FDGAPRGAAPHGQVP--PPLNNVPYGSATPPARSGSGQPRG--GNP 501
G P P G VP P + +P G GS P G GNP
Sbjct: 862 LPGPPGPVGPPG-VPGRPGQDGLP-GLPGSKGEMGSMGPPGSKGNP 905
>ZFIN|ZDB-GENE-041221-2 [details] [associations]
symbol:prnpb "prion protein b" species:7955 "Danio
rerio" [GO:0051260 "protein homooligomerization" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0016338 "calcium-independent
cell-cell adhesion" evidence=IMP] [GO:0007156 "homophilic cell
adhesion" evidence=IDA] [GO:0055113 "epiboly involved in
gastrulation with mouth forming second" evidence=IGI;IMP]
[GO:2000047 "regulation of cell-cell adhesion mediated by cadherin"
evidence=IMP] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0007417 "central nervous system development" evidence=IGI]
[GO:0009986 "cell surface" evidence=IDA] InterPro:IPR022416
ZFIN:ZDB-GENE-041221-2 GO:GO:0005886 GO:GO:0009986 GO:GO:0051260
GO:GO:0007156 GO:GO:0055113 GO:GO:0016338 Gene3D:1.10.790.10
SUPFAM:SSF54098 EMBL:AJ850286 IPI:IPI00485089 UniGene:Dr.90045
ProteinModelPortal:Q5K0E1 PRIDE:Q5K0E1 HOVERGEN:HBG056090
InParanoid:Q5K0E1 Bgee:Q5K0E1 GO:GO:2000047 Uniprot:Q5K0E1
Length = 606
Score = 123 (48.4 bits), Expect = 0.00029, P = 0.00029
Identities = 90/294 (30%), Positives = 109/294 (37%)
Query: 230 PNVDRRAADGSYG--GATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAG 287
P A GSY G G+S + G +Y G P G P G G
Sbjct: 87 PGAGSYPAGGSYPYPGRGGSSPGGYPNQNPGAGSYPSGGSYPSAGGNPNQYPGRGGYNPG 146
Query: 288 --PNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKG 345
PN + A + G+ A + + PG + GY P+ +P G SY PA G
Sbjct: 147 GYPNQNPGAGSYPAGGSYPSAGGNPNQYPGRGGTSPAGY-----PNQNPGAG-SY-PAGG 199
Query: 346 PGYDPTKG-PG-YDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRG-PNYDMQRG- 401
Y G P Y + GSN PN + G SY P G Y G PN RG
Sbjct: 200 -SYPSAGGNPNQYPGRGGSNPGGY--PNQNPGAG-SY-PAGG-SYPSAGGNPNQYPGRGG 253
Query: 402 --PGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQR-GQ-GYDMRRAP---SYDP 454
PG + PG G Y P+ P G GY Q G+ GY P SY P
Sbjct: 254 SSPGGNPNQNPGAGTYAGGGY-----PNQYPGGG-GYSNQNPGRSGYSPGGYPGAGSY-P 306
Query: 455 SRGTGFDGAPRGAAPH--GQVPP--PLNNV--P-YGSATPPARSGSGQPRGGNP 501
R G G GA P G P P N + P YG + G G GG+P
Sbjct: 307 VRNAGQPGVYPGAHPSAGGGYPNWNPNNQILSPRYGGSF----GGGGFGTGGSP 356
>UNIPROTKB|F1PHY1 [details] [associations]
symbol:COL1A2 "Collagen alpha-2(I) chain" species:9615
"Canis lupus familiaris" [GO:0071230 "cellular response to amino
acid stimulus" evidence=IEA] [GO:0070208 "protein
heterotrimerization" evidence=IEA] [GO:0048407 "platelet-derived
growth factor binding" evidence=IEA] [GO:0046332 "SMAD binding"
evidence=IEA] [GO:0043589 "skin morphogenesis" evidence=IEA]
[GO:0042802 "identical protein binding" evidence=IEA] [GO:0030674
"protein binding, bridging" evidence=IEA] [GO:0030199 "collagen
fibril organization" evidence=IEA] [GO:0008217 "regulation of blood
pressure" evidence=IEA] [GO:0007266 "Rho protein signal
transduction" evidence=IEA] [GO:0007179 "transforming growth factor
beta receptor signaling pathway" evidence=IEA] [GO:0005615
"extracellular space" evidence=IEA] [GO:0005584 "collagen type I"
evidence=IEA] [GO:0001568 "blood vessel development" evidence=IEA]
[GO:0001501 "skeletal system development" evidence=IEA] [GO:0005201
"extracellular matrix structural constituent" evidence=IEA]
InterPro:IPR000885 Pfam:PF01410 ProDom:PD002078 PROSITE:PS51461
SMART:SM00038 GO:GO:0005615 GO:GO:0030199 GO:GO:0001501
GO:GO:0008217 GO:GO:0007179 GO:GO:0007266 GO:GO:0070208
InterPro:IPR008160 Pfam:PF01391 GO:GO:0001568 GO:GO:0071230
GO:GO:0005201 GO:GO:0043589 GeneTree:ENSGT00660000095287
GO:GO:0005584 OMA:TGPIGSA EMBL:AAEX03009315
Ensembl:ENSCAFT00000031580 Uniprot:F1PHY1
Length = 1366
Score = 127 (49.8 bits), Expect = 0.00029, P = 0.00029
Identities = 90/303 (29%), Positives = 110/303 (36%)
Query: 223 RAELMNAPNVDRRAADGSYGGATG-NSENETSGRP--VGQNAYEDGYGVPQGHGPPPSAT 279
R E+ P V GA G +G P G G+P G +
Sbjct: 282 RGEV-GLPGVSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATG 340
Query: 280 TAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGP-GYEASKGPGYDASKA-PSYDPTKG 337
G+VG P + S + G P A P GP G E +GP +A A PS P G
Sbjct: 341 ARGLVGE-PGPAGSKGESGNKGEPGSAGAQGPPGPSGEEGKRGPNGEAGSAGPSGPP--G 397
Query: 338 PSYDP-AKG-PGYDPTKGP-GYDAQKGSNYDAQ-RGPNYDIHRGPSYDPQRGLGYDMQRG 393
P ++G PG D G G +G+ A RGPN D R P +P G RG
Sbjct: 398 LRGSPGSRGLPGADGRAGVMGPPGPRGATGPAGVRGPNGDSGR-PG-EP----GLMGPRG 451
Query: 394 -PNYDMQRGP-GYE-TQRVPGYDVQRGPVYEA--QRAPSYIPQRGP-GYDLQRGQGYDMR 447
P GP G E +PG D + GP+ A + P I GP G G+ D
Sbjct: 452 FPGAPGNVGPAGKEGPMGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKG 511
Query: 448 RAPSYDPSRGT-GFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRG-----GNP 501
A +RG G DG P G G A PP G P G G P
Sbjct: 512 HA-GLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPAGTAGEVGKP 570
Query: 502 ARR 504
R
Sbjct: 571 GER 573
>UNIPROTKB|F1NI79 [details] [associations]
symbol:COL5A1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005201 "extracellular matrix structural
constituent" evidence=IEA] [GO:0005581 "collagen" evidence=IEA]
InterPro:IPR000885 Pfam:PF01410 ProDom:PD002078 PROSITE:PS51461
SMART:SM00038 Gene3D:2.60.120.200 InterPro:IPR008985
InterPro:IPR013320 SUPFAM:SSF49899 GO:GO:0005581 InterPro:IPR008160
Pfam:PF01391 InterPro:IPR001791 Pfam:PF02210 GO:GO:0005201
SMART:SM00210 GeneTree:ENSGT00700000104155 EMBL:AADN02026433
EMBL:AADN02026434 EMBL:AADN02026427 EMBL:AADN02026428
EMBL:AADN02026429 EMBL:AADN02026430 EMBL:AADN02026431
EMBL:AADN02026432 IPI:IPI00602965 Ensembl:ENSGALT00000004020
ArrayExpress:F1NI79 Uniprot:F1NI79
Length = 1702
Score = 128 (50.1 bits), Expect = 0.00029, P = 0.00029
Identities = 75/249 (30%), Positives = 96/249 (38%)
Query: 256 PVGQNAYEDGYGVPQGHGPPPSATTAGVVG-AGPNTSTSAYAATQSGTPMRAAYDIPRG- 313
P+G + G P GP S G G AGP Q G P A +G
Sbjct: 930 PIGSPGLKGNEGPPGPPGPAGSPGERGPAGSAGP-IGLPGRPGPQ-GPPGPAG---EKGA 984
Query: 314 PGYEASKGP-GYDASKAPSYDPTKGPSYDPAKGPGYDPTKGP-GYDAQKGSNYD-AQRGP 370
PG + +GP G D + P P GP+ P PG D KG G QKGS D ++GP
Sbjct: 985 PGEKGPQGPAGRDGIQGPVGLP--GPA-GPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGP 1041
Query: 371 NYDIHRGPSYDPQRGLGYDMQRGP-NYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYI 429
GP+ PQ +G Q GP D + GP + Q + G GP P +
Sbjct: 1042 P-----GPT-GPQGPIG---QPGPAGADGEPGPRGQ-QGLFGQKGDEGP-RGFPGPPGPV 1090
Query: 430 PQRG-PGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPP 488
+G PG ++G+ D+ + P G G P P G N G P
Sbjct: 1091 GLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGPPGADGPQGPAGGIGNPGAVGEKGEP 1150
Query: 489 ARSGS-GQP 496
SG G P
Sbjct: 1151 GESGEPGLP 1159
>UNIPROTKB|E1BF96 [details] [associations]
symbol:PPP1R10 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072357 "PTW/PP1 phosphatase complex" evidence=IEA]
[GO:0000785 "chromatin" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000571 InterPro:IPR003617
InterPro:IPR017923 Pfam:PF00642 Pfam:PF08711 PROSITE:PS50103
PROSITE:PS51319 SMART:SM00356 SMART:SM00509 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0000785 GO:GO:0006351
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0072357 CTD:5514
OMA:PPPHEHR GeneTree:ENSGT00530000063820 EMBL:DAAA02055402
IPI:IPI00698425 RefSeq:NP_001137335.1 UniGene:Bt.27784
Ensembl:ENSBTAT00000009104 GeneID:510825 KEGG:bta:510825
NextBio:20869636 Uniprot:E1BF96
Length = 924
Score = 125 (49.1 bits), Expect = 0.00030, P = 0.00030
Identities = 71/271 (26%), Positives = 87/271 (32%)
Query: 239 GSYGGATGNSENETS-GRPV-GQNAYEDGYGVPQGH---GPPPSATTAGVVGAGPNTSTS 293
G GG G G P+ G + G G P G GPPP GP
Sbjct: 631 GGPGGPKGMQHFPPGPGGPMPGPHGGPGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDP-- 688
Query: 294 AYAATQSGTPMRAAYDIPRGPG-YEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTK 352
G PMR P GPG Y +G P P +G + G +
Sbjct: 689 -----MRGGPMRGGPG-P-GPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRG 741
Query: 353 GPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGY 412
GPG G + GP ++ G + P G G M G + GPG G+
Sbjct: 742 GPGGGMVGGGGHRPHEGPGGGMNSGSGHRPHEGPGSGM--GGGHRPHEGPGGSMGG--GH 797
Query: 413 DVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQ 472
GP + P GPG + G G+ P G G G P G PH
Sbjct: 798 RPHEGPGGGMGGGSGHRPHEGPGGGMGAGGGHR--------PHEGPGH-GGPHGHRPH-D 847
Query: 473 VPPPLNNVPYGSATPPARSGSGQPRGGNPAR 503
VP + G R G GG R
Sbjct: 848 VPGHRGHDHRGPPPHEHRGHDGPGHGGGGHR 878
Score = 121 (47.7 bits), Expect = 0.00081, P = 0.00081
Identities = 49/192 (25%), Positives = 68/192 (35%)
Query: 243 GATGNSENETSGRPV-GQNAYEDGYGVPQGHGPPPSATTAGV-------VGAGPNTSTSA 294
G G +E P G G G P G G P G G G N+ +
Sbjct: 710 GGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGGGMNSGSGH 769
Query: 295 YAATQSGTPMRAAYDIPRGPG------YEASKGPGYDASKAPSYDPTKGPSYDPAKGPGY 348
G+ M + GPG + +GPG + P +GP G G+
Sbjct: 770 RPHEGPGSGMGGGHRPHEGPGGSMGGGHRPHEGPGGGMGGGSGHRPHEGPGGGMGAGGGH 829
Query: 349 DPTKGPGYDAQKGSN-YDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQ 407
P +GPG+ G +D +D HRGP P G+D GP + G++
Sbjct: 830 RPHEGPGHGGPHGHRPHDVPGHRGHD-HRGPP--PHEHRGHD---GPGHGGGGHRGHDGG 883
Query: 408 RVPGYDVQRGPV 419
G D+ PV
Sbjct: 884 HSHGGDMSNRPV 895
>ZFIN|ZDB-GENE-030707-4 [details] [associations]
symbol:anxa11a "annexin A11a" species:7955 "Danio
rerio" [GO:0005509 "calcium ion binding" evidence=IEA] [GO:0005544
"calcium-dependent phospholipid binding" evidence=IEA]
InterPro:IPR001464 InterPro:IPR008157 InterPro:IPR018252
InterPro:IPR018502 Pfam:PF00191 PRINTS:PR00196 PROSITE:PS00223
SMART:SM00335 ZFIN:ZDB-GENE-030707-4 GO:GO:0005509 eggNOG:NOG267770
GO:GO:0005544 Gene3D:1.10.220.10 PANTHER:PTHR10502 SUPFAM:SSF47874
HOVERGEN:HBG061815 PANTHER:PTHR10502:SF29 HSSP:P79134 EMBL:AY178801
IPI:IPI00498021 UniGene:Dr.77310 ProteinModelPortal:Q804G4
SMR:Q804G4 PRIDE:Q804G4 InParanoid:Q804G4 NextBio:20812811
ArrayExpress:Q804G4 Bgee:Q804G4 Uniprot:Q804G4
Length = 526
Score = 122 (48.0 bits), Expect = 0.00030, P = 0.00030
Identities = 58/201 (28%), Positives = 73/201 (36%)
Query: 301 GTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQK 360
G P ++ Y P+G GY PG A Y P G Y P G GY P G Y Q
Sbjct: 5 GYPPQSGYP-PQGGGYPPQ--PGAYPPAAGGYPPQPG-MYPPQAG-GYPPQPG-AYPPQP 58
Query: 361 GSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVY 420
G+ + Q G + G P +G D P ++ G Q P
Sbjct: 59 GA-FPGQPGQYPSVPSGGWGAP---IGLDNLPNPGFNASNIQGMANQFAADGGFAPNPSM 114
Query: 421 EAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNV 480
+ P PQ G + Q Y M P + G G P G P GQ P N+
Sbjct: 115 FSGGYPG--PQPGGPPAVSPNQPYGMYPQPGGGMPQNPGM-GYP-GGPPPGQQMPSYPNI 170
Query: 481 PYGSATPPARSGSGQPRGGNP 501
P + TP SG PR +P
Sbjct: 171 P--APTP---SGPSYPRAPSP 186
>UNIPROTKB|F1NR01 [details] [associations]
symbol:COL5A1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005201 "extracellular matrix structural
constituent" evidence=IEA] [GO:0005581 "collagen" evidence=IEA]
InterPro:IPR000885 Pfam:PF01410 ProDom:PD002078 PROSITE:PS51461
SMART:SM00038 Gene3D:2.60.120.200 InterPro:IPR008985
InterPro:IPR013320 SUPFAM:SSF49899 GO:GO:0005581 InterPro:IPR008160
Pfam:PF01391 InterPro:IPR001791 SMART:SM00282 Pfam:PF02210
GO:GO:0005201 SMART:SM00210 GeneTree:ENSGT00700000104155
EMBL:AADN02026433 EMBL:AADN02026434 EMBL:AADN02026427
EMBL:AADN02026428 EMBL:AADN02026429 EMBL:AADN02026430
EMBL:AADN02026431 EMBL:AADN02026432 IPI:IPI00822317
Ensembl:ENSGALT00000039037 ArrayExpress:F1NR01 Uniprot:F1NR01
Length = 1773
Score = 128 (50.1 bits), Expect = 0.00030, P = 0.00030
Identities = 75/249 (30%), Positives = 96/249 (38%)
Query: 256 PVGQNAYEDGYGVPQGHGPPPSATTAGVVG-AGPNTSTSAYAATQSGTPMRAAYDIPRG- 313
P+G + G P GP S G G AGP Q G P A +G
Sbjct: 1001 PIGSPGLKGNEGPPGPPGPAGSPGERGPAGSAGP-IGLPGRPGPQ-GPPGPAG---EKGA 1055
Query: 314 PGYEASKGP-GYDASKAPSYDPTKGPSYDPAKGPGYDPTKGP-GYDAQKGSNYD-AQRGP 370
PG + +GP G D + P P GP+ P PG D KG G QKGS D ++GP
Sbjct: 1056 PGEKGPQGPAGRDGIQGPVGLP--GPA-GPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGP 1112
Query: 371 NYDIHRGPSYDPQRGLGYDMQRGP-NYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYI 429
GP+ PQ +G Q GP D + GP + Q + G GP P +
Sbjct: 1113 P-----GPT-GPQGPIG---QPGPAGADGEPGPRGQ-QGLFGQKGDEGP-RGFPGPPGPV 1161
Query: 430 PQRG-PGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPP 488
+G PG ++G+ D+ + P G G P P G N G P
Sbjct: 1162 GLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGPPGADGPQGPAGGIGNPGAVGEKGEP 1221
Query: 489 ARSGS-GQP 496
SG G P
Sbjct: 1222 GESGEPGLP 1230
>UNIPROTKB|F1NR03 [details] [associations]
symbol:COL5A1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005201 "extracellular matrix structural
constituent" evidence=IEA] [GO:0005581 "collagen" evidence=IEA]
InterPro:IPR000885 Pfam:PF01410 ProDom:PD002078 PROSITE:PS51461
SMART:SM00038 Gene3D:2.60.120.200 InterPro:IPR008985
InterPro:IPR013320 SUPFAM:SSF49899 GO:GO:0005581 InterPro:IPR008160
Pfam:PF01391 InterPro:IPR001791 SMART:SM00282 Pfam:PF02210
GO:GO:0005201 SMART:SM00210 GeneTree:ENSGT00700000104155
EMBL:AADN02026433 EMBL:AADN02026434 EMBL:AADN02026427
EMBL:AADN02026428 EMBL:AADN02026429 EMBL:AADN02026430
EMBL:AADN02026431 EMBL:AADN02026432 IPI:IPI00818113
Ensembl:ENSGALT00000039034 ArrayExpress:F1NR03 Uniprot:F1NR03
Length = 1804
Score = 128 (50.1 bits), Expect = 0.00031, P = 0.00031
Identities = 75/249 (30%), Positives = 96/249 (38%)
Query: 256 PVGQNAYEDGYGVPQGHGPPPSATTAGVVG-AGPNTSTSAYAATQSGTPMRAAYDIPRG- 313
P+G + G P GP S G G AGP Q G P A +G
Sbjct: 1032 PIGSPGLKGNEGPPGPPGPAGSPGERGPAGSAGP-IGLPGRPGPQ-GPPGPAG---EKGA 1086
Query: 314 PGYEASKGP-GYDASKAPSYDPTKGPSYDPAKGPGYDPTKGP-GYDAQKGSNYD-AQRGP 370
PG + +GP G D + P P GP+ P PG D KG G QKGS D ++GP
Sbjct: 1087 PGEKGPQGPAGRDGIQGPVGLP--GPA-GPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGP 1143
Query: 371 NYDIHRGPSYDPQRGLGYDMQRGP-NYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYI 429
GP+ PQ +G Q GP D + GP + Q + G GP P +
Sbjct: 1144 P-----GPT-GPQGPIG---QPGPAGADGEPGPRGQ-QGLFGQKGDEGP-RGFPGPPGPV 1192
Query: 430 PQRG-PGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPP 488
+G PG ++G+ D+ + P G G P P G N G P
Sbjct: 1193 GLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGPPGADGPQGPAGGIGNPGAVGEKGEP 1252
Query: 489 ARSGS-GQP 496
SG G P
Sbjct: 1253 GESGEPGLP 1261
>UNIPROTKB|F1NR02 [details] [associations]
symbol:COL5A1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0001568 "blood vessel development"
evidence=IEA] [GO:0003007 "heart morphogenesis" evidence=IEA]
[GO:0005201 "extracellular matrix structural constituent"
evidence=IEA] [GO:0005588 "collagen type V" evidence=IEA]
[GO:0005604 "basement membrane" evidence=IEA] [GO:0007155 "cell
adhesion" evidence=IEA] [GO:0008201 "heparin binding" evidence=IEA]
[GO:0030199 "collagen fibril organization" evidence=IEA]
[GO:0032964 "collagen biosynthetic process" evidence=IEA]
[GO:0035313 "wound healing, spreading of epidermal cells"
evidence=IEA] [GO:0043206 "extracellular fibril organization"
evidence=IEA] [GO:0043394 "proteoglycan binding" evidence=IEA]
[GO:0043588 "skin development" evidence=IEA] [GO:0045112 "integrin
biosynthetic process" evidence=IEA] [GO:0048407 "platelet-derived
growth factor binding" evidence=IEA] [GO:0048592 "eye
morphogenesis" evidence=IEA] [GO:0051128 "regulation of cellular
component organization" evidence=IEA] InterPro:IPR000885
Pfam:PF01410 ProDom:PD002078 PROSITE:PS51461 SMART:SM00038
GO:GO:0030199 GO:GO:0008201 GO:GO:0007155 Gene3D:2.60.120.200
InterPro:IPR008985 InterPro:IPR013320 SUPFAM:SSF49899 GO:GO:0035313
InterPro:IPR008160 Pfam:PF01391 InterPro:IPR001791 SMART:SM00282
GO:GO:0005604 GO:GO:0043206 Pfam:PF02210 GO:GO:0005201 OMA:TIYEGIG
GO:GO:0005588 GO:GO:0045112 GO:GO:0051128 SMART:SM00210
GeneTree:ENSGT00700000104155 EMBL:AADN02026433 EMBL:AADN02026434
EMBL:AADN02026427 EMBL:AADN02026428 EMBL:AADN02026429
EMBL:AADN02026430 EMBL:AADN02026431 EMBL:AADN02026432
IPI:IPI00821684 Ensembl:ENSGALT00000039035 ArrayExpress:F1NR02
Uniprot:F1NR02
Length = 1815
Score = 128 (50.1 bits), Expect = 0.00031, P = 0.00031
Identities = 75/249 (30%), Positives = 96/249 (38%)
Query: 256 PVGQNAYEDGYGVPQGHGPPPSATTAGVVG-AGPNTSTSAYAATQSGTPMRAAYDIPRG- 313
P+G + G P GP S G G AGP Q G P A +G
Sbjct: 1043 PIGSPGLKGNEGPPGPPGPAGSPGERGPAGSAGP-IGLPGRPGPQ-GPPGPAG---EKGA 1097
Query: 314 PGYEASKGP-GYDASKAPSYDPTKGPSYDPAKGPGYDPTKGP-GYDAQKGSNYD-AQRGP 370
PG + +GP G D + P P GP+ P PG D KG G QKGS D ++GP
Sbjct: 1098 PGEKGPQGPAGRDGIQGPVGLP--GPA-GPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGP 1154
Query: 371 NYDIHRGPSYDPQRGLGYDMQRGP-NYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYI 429
GP+ PQ +G Q GP D + GP + Q + G GP P +
Sbjct: 1155 P-----GPT-GPQGPIG---QPGPAGADGEPGPRGQ-QGLFGQKGDEGP-RGFPGPPGPV 1203
Query: 430 PQRG-PGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPP 488
+G PG ++G+ D+ + P G G P P G N G P
Sbjct: 1204 GLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGPPGADGPQGPAGGIGNPGAVGEKGEP 1263
Query: 489 ARSGS-GQP 496
SG G P
Sbjct: 1264 GESGEPGLP 1272
>DICTYBASE|DDB_G0279193 [details] [associations]
symbol:rpb1 "RNA polymerase II core subunit"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA;ISS] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 dictyBase:DDB_G0279193
GO:GO:0006355 GenomeReviews:CM000152_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AAFI02000030 GO:GO:0003899 eggNOG:COG0086 GO:GO:0005665
OMA:KVLPWST EMBL:S52651 PIR:A56823 RefSeq:XP_641735.1 STRING:P35084
PRIDE:P35084 EnsemblProtists:DDB0215406 GeneID:8621932
KEGG:ddi:DDB_G0279193 KO:K03006 ProtClustDB:CLSZ2428993
Uniprot:P35084
Length = 1727
Score = 135 (52.6 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 65/219 (29%), Positives = 85/219 (38%)
Query: 288 PNTSTSAYA-ATQSGTPMRAAYDIPRGPGYEASKG---------PGYDASKA--PSYDP- 334
P + T +Y+ S TP YD P P E +G PGY+A+K+ SY
Sbjct: 1488 PGSQTPSYSYGDGSTTPFHNPYDAPLSPFNETFRGDFSPSAMNSPGYNANKSYGSSYQYF 1547
Query: 335 TKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGP 394
+ P+Y P P Y PT P Y S Y + P+Y PSY P Y P
Sbjct: 1548 PQSPTYSPTS-PSYSPTS-PSYSPTSPS-Y-SPTSPSYS-PTSPSYSPTSP-SYS-PTSP 1600
Query: 395 NYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDP 454
Y P Y P Y P Y + +PSY P P Y Y +PSY P
Sbjct: 1601 FYS-PTSPSYSPTS-PSYS-PTSPSY-SPTSPSYSPT-SPSYS-PTSPSYSPT-SPSYSP 1653
Query: 455 SRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGS 493
+ + +P +P P + P S T P+ S S
Sbjct: 1654 TSPSYSPTSP-SYSPTSPSYSPTS--PSYSPTSPSYSPS 1689
Score = 42 (19.8 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 195 KKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRAADGSYGGA 244
+K +N ++ +V + N + E+EKL A L D D ++ A
Sbjct: 978 QKLFN--IDIRRVSDLNPAVVVLEIEKLVARLKIIATADTTEDDENFNRA 1025
>UNIPROTKB|E9PQW6 [details] [associations]
symbol:ARID1A "AT-rich interactive domain-containing
protein 1A" species:9606 "Homo sapiens" [GO:0006325 "chromatin
organization" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] EMBL:AL034380 GO:GO:0016514
EMBL:AL512408 HGNC:HGNC:11110 ChiTaRS:ARID1A GO:GO:0006325
IPI:IPI00979164 Ensembl:ENST00000524572 ArrayExpress:E9PQW6
Bgee:E9PQW6 Uniprot:E9PQW6
Length = 123
Score = 98 (39.6 bits), Expect = 0.00032, P = 0.00032
Identities = 36/108 (33%), Positives = 47/108 (43%)
Query: 340 YDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQ 399
Y +GP P +G GY Q + QR P +G + GL Y Q P Y Q
Sbjct: 18 YSQQQGPPSGPQQGHGYPGQPYGSQTPQRYPM--TMQGRAQSAMGGLSYTQQIPP-YG-Q 73
Query: 400 RGP-GYETQ-RVPGYDVQ------RGPVYEAQRAPSYIPQRGPGYDLQ 439
+GP GY Q + P Y+ Q + P Y +Q+ PS P P Y Q
Sbjct: 74 QGPSGYGQQGQTPYYNQQSPHPQQQQPPY-SQQPPSQTPHAQPSYQQQ 120
>ZFIN|ZDB-GENE-030707-5 [details] [associations]
symbol:anxa11b "annexin A11b" species:7955 "Danio
rerio" [GO:0005509 "calcium ion binding" evidence=IEA] [GO:0005544
"calcium-dependent phospholipid binding" evidence=IEA]
InterPro:IPR001464 InterPro:IPR008157 InterPro:IPR018252
InterPro:IPR018502 Pfam:PF00191 PRINTS:PR00196 PROSITE:PS00223
SMART:SM00335 ZFIN:ZDB-GENE-030707-5 GO:GO:0005509 eggNOG:NOG267770
GO:GO:0005544 Gene3D:1.10.220.10 PANTHER:PTHR10502 SUPFAM:SSF47874
HOGENOM:HOG000158803 HOVERGEN:HBG061815 PANTHER:PTHR10502:SF29
OrthoDB:EOG4Z0B60 InterPro:IPR013286 PRINTS:PR01871 HSSP:P79134
EMBL:BC068366 EMBL:AY178802 IPI:IPI00484212 RefSeq:NP_861431.1
UniGene:Dr.76267 SMR:Q804G3 STRING:Q804G3 GeneID:353365
KEGG:dre:353365 CTD:353365 NextBio:20812741 Uniprot:Q804G3
Length = 485
Score = 121 (47.7 bits), Expect = 0.00034, P = 0.00034
Identities = 59/175 (33%), Positives = 71/175 (40%)
Query: 330 PSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYD 389
P Y P G SY PA GP P G Y Q G+ Y Q G Y G ++ PQ G +
Sbjct: 4 PGYPPAGG-SYPPASGPYQQPAAG--YPPQPGA-YPPQAG-YYPPQPG-AFPPQPG-AFP 56
Query: 390 MQRG--P---NYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSY--IPQRG-----PGYD 437
Q G P Y Q G GY G+ Q G Y A + +Y +P G PG+
Sbjct: 57 PQPGAFPPGAGYPPQAG-GYPAAPGGGFPPQAGG-YPAAQPGAYPNMPAAGGWGGHPGFG 114
Query: 438 LQRG---QGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPA 489
G QGY AP P + GAP P+ +P P G TPPA
Sbjct: 115 APAGGMPQGYPGVPAPGQQPM--PAYPGAP---VPNPGMPGYGGGAPTGP-TPPA 163
>UNIPROTKB|P02812 [details] [associations]
symbol:PRB2 "Basic salivary proline-rich protein 2"
species:9606 "Homo sapiens" [GO:0005576 "extracellular region"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] GO:GO:0005576 EMBL:AC078950
EMBL:BX484538 EMBL:S80905 EMBL:K03208 IPI:IPI00552432 PIR:B40750
PIR:E25372 UniGene:Hs.654486 STRING:P02812 DMDM:160409933
PaxDb:P02812 PRIDE:P02812 Ensembl:ENST00000389362 UCSC:uc010shk.1
GeneCards:GC12M011544 HGNC:HGNC:9338 MIM:168810 neXtProt:NX_P02812
ArrayExpress:P02812 Bgee:P02812 CleanEx:HS_PRB2
Genevestigator:P02812 GermOnline:ENSG00000173342 InterPro:IPR026086
PANTHER:PTHR23203 Uniprot:P02812
Length = 416
Score = 120 (47.3 bits), Expect = 0.00035, P = 0.00035
Identities = 69/257 (26%), Positives = 88/257 (34%)
Query: 253 SGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYA--ATQSGTPMRAAYDI 310
+G P Q A G PQG P P G G N G P + +
Sbjct: 33 AGNP--QGAPPQGGNKPQGP-PSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGG-NK 88
Query: 311 PRGP---GYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQ 367
P+GP G P D S++P P K P P +G G P +GP K Q
Sbjct: 89 PQGPPPPGKPQGPPPQGDKSRSPRSPPGK-PQGPPPQG-GNQP-QGPPPPPGKPQGPPPQ 145
Query: 368 RGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPS 427
G +GP P + G Q R P + Q P Q G + P
Sbjct: 146 GGNK---PQGPP-PPGKPQGPPPQGDNKSRSSRSPPGKPQGPPP---QGGNQPQGPPPPP 198
Query: 428 YIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLN-NVPYGSAT 486
PQ P + QG P P +G + R Q PPP N P G
Sbjct: 199 GKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPP 258
Query: 487 PPARSGSGQPRGGNPAR 503
PP + P+GGN ++
Sbjct: 259 PPGKPQGPPPQGGNKSQ 275
Score = 118 (46.6 bits), Expect = 0.00058, P = 0.00058
Identities = 76/272 (27%), Positives = 99/272 (36%)
Query: 246 GNSENETSGRPVG--QNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTP 303
G++++ +S P G Q G PQG PPP G P G P
Sbjct: 166 GDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQ----GPPPQGGNKPQGPPPPGKP 221
Query: 304 MRAAYDIPRGPGY-EASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGS 362
P+G ++++ P K P P +G + P +GP P K G Q G+
Sbjct: 222 QGPP---PQGDNKSQSARSP---PGK-PQGPPPQGGN-QP-QGPPPPPGKPQGPPPQGGN 272
Query: 363 NYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGP---GYETQRVPGYDVQ-RGP 418
+Q P +GP PQ G R P Q P G + Q P + +GP
Sbjct: 273 K--SQGPPPPGKPQGPP--PQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP 328
Query: 419 VYEAQRAPSYIPQRG-P-GYDLQRGQGYDMRRAPSYDPSRGTGFDGAPR--GAAPHGQVP 474
+ P P G P G Q G R+P P G P+ G P G P
Sbjct: 329 PPQGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQ------GPPQQEGNNPQGP-P 381
Query: 475 PPLNNVPYGSATPPARSGSGQPR---GGNPAR 503
PP P PPA G PR GG P+R
Sbjct: 382 PPAGGNPQQPQAPPAGQPQGPPRPPQGGRPSR 413
>ZFIN|ZDB-GENE-030516-3 [details] [associations]
symbol:col18a1 "collagen type XVIII, alpha 1"
species:7955 "Danio rerio" [GO:0031012 "extracellular matrix"
evidence=IEA] [GO:0005198 "structural molecule activity"
evidence=IEA] [GO:0007155 "cell adhesion" evidence=IEA] [GO:0005581
"collagen" evidence=IEA] InterPro:IPR010515 InterPro:IPR020067
Pfam:PF01392 Pfam:PF06482 PROSITE:PS50038 ZFIN:ZDB-GENE-030516-3
GO:GO:0005198 Gene3D:3.10.100.10 InterPro:IPR016186
InterPro:IPR016187 SUPFAM:SSF56436 GO:GO:0007155 InterPro:IPR008985
SUPFAM:SSF49899 GO:GO:0005581 InterPro:IPR008160 Pfam:PF01391
InterPro:IPR001791 SMART:SM00282 Gene3D:1.10.2000.10
SUPFAM:SSF63501 SMART:SM00210 GeneTree:ENSGT00700000104250
HOGENOM:HOG000231591 HOVERGEN:HBG053241 EMBL:BX927363 EMBL:CT030212
IPI:IPI00616856 UniGene:Dr.52833 SMR:B0S8G4
Ensembl:ENSDART00000130434 OMA:DRFNRYD Uniprot:B0S8G4
Length = 1645
Score = 127 (49.8 bits), Expect = 0.00035, P = 0.00035
Identities = 74/274 (27%), Positives = 99/274 (36%)
Query: 239 GSYGGATGNSENETSGRPVGQNAYE--DGYGVPQGHGP--PPSATTAGVVGA-GPNTSTS 293
GS G +G G P G+ + G+G P G PP G G GP ++
Sbjct: 613 GS-GSVSGGGSKGDKGVP-GEKGMKGTSGFGYPGSKGDRGPP-----GPPGPPGPQGPSA 665
Query: 294 AYAATQSGTPMRAAYDIPRGP-GYEASKGP-GYDASKAPSYDPTKGPSYDPAKGPGYDPT 351
G+ ++ PRGP G + GP G + + K P+ PG
Sbjct: 666 EVEVRGDGSVVQKVTG-PRGPPGPQGPPGPPGPEGEPGDPGEDGKAGQVGPSGFPGNPGN 724
Query: 352 KGP-GYDAQKGSNYDAQRGP-NYDIHRGPSYDPQRGLGYDMQRGPNYDMQ--RG-PGYET 406
GP G +G + RGP GPS R DM+ G +DM R PG
Sbjct: 725 PGPKGDKGDRGESQPGPRGPPGPPGPPGPSSGFDRPTFVDME-GSGFDMDSVRAVPGLPG 783
Query: 407 QRVPGYDVQRGPVYEAQRAPS-YIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPR 465
PG GP A + P PG + GQ + P D G +
Sbjct: 784 P--PGPPGPPGPPGSASSGSGGFGPPGPPGQNGAPGQP-GLSGVPGADGKPGLPGPKGEK 840
Query: 466 GAAPHGQVPPPLNNV-PYGSATPPARSGSGQPRG 498
G A +P P+ GS+ PP +G G P G
Sbjct: 841 GDAGELGLPGPVGEKGAKGSSGPPGTTGIGGPAG 874
>UNIPROTKB|F1Q0F7 [details] [associations]
symbol:COL4A5 "Collagen alpha-5(IV) chain" species:9615
"Canis lupus familiaris" [GO:0005581 "collagen" evidence=IEA]
[GO:0005201 "extracellular matrix structural constituent"
evidence=IEA] InterPro:IPR001442 Pfam:PF01413 PROSITE:PS51403
SMART:SM00111 InterPro:IPR016187 SUPFAM:SSF56436 GO:GO:0005581
InterPro:IPR008160 Pfam:PF01391 GO:GO:0005201 Gene3D:2.170.240.10
GeneTree:ENSGT00690000101772 EMBL:AAEX03026757 EMBL:AAEX03026761
EMBL:AAEX03026758 EMBL:AAEX03026759 EMBL:AAEX03026760
Ensembl:ENSCAFT00000018078 Uniprot:F1Q0F7
Length = 1678
Score = 127 (49.8 bits), Expect = 0.00036, P = 0.00036
Identities = 59/197 (29%), Positives = 72/197 (36%)
Query: 311 PRGPGYEASKGP--GYDASKAPSYDPTK-G-PSYDPAKG-PGYDPTKG-PGYDAQKGSNY 364
P PG GP G K +P K G P D G PG G PGY + G
Sbjct: 269 PGPPGIRGPPGPPGGMKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGDPGYPGEPGR-- 326
Query: 365 DAQRGPNYDI-HRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQR-VPGYDVQRG-PVYE 421
D ++G DI GP + G G + N + PG + +R PG G P
Sbjct: 327 DGEKGQKGDIGSTGPPGLSKPGTGVTVGEKGNMGLPGLPGEKGERGFPGIQGPPGLPGPP 386
Query: 422 AQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVP 481
P PG+ +RGQ D P G DG P G PP P
Sbjct: 387 VLGTAVMGPPGPPGFPGERGQKGD-EGPPGISIPGFPGLDGQPGAPGLRGPPGPP---GP 442
Query: 482 YGSATPPARSGSGQPRG 498
+ S +PP GS RG
Sbjct: 443 HISPSPPGPPGSPGDRG 459
>UNIPROTKB|E1BC70 [details] [associations]
symbol:VPS37C "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009851
Pfam:PF07200 PROSITE:PS51314 KO:K12185 GeneTree:ENSGT00530000063123
CTD:55048 OMA:VERCQEQ EMBL:DAAA02063396 IPI:IPI00692039
RefSeq:NP_001193079.1 UniGene:Bt.105953 Ensembl:ENSBTAT00000010607
GeneID:613817 KEGG:bta:613817 NextBio:20898788 Uniprot:E1BC70
Length = 350
Score = 91 (37.1 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 61/196 (31%), Positives = 71/196 (36%)
Query: 326 ASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRG 385
AS P+ D T P P PG T P DAQ + P Y + P Y P G
Sbjct: 162 ASLEPAGD-TPPPRPPPPLHPGPQTTPPPAEDAQPQPPQPSVVPP-YPL---P-YSPSPG 215
Query: 386 LGYDMQRGPNYDMQRGPG-YETQRVPG--YDVQRGPVYEAQ----RAPS---YIPQRG-- 433
M GP P + P Y GP Y A RAPS + PQR
Sbjct: 216 ----MPVGPTAHGALPPAPFPVVSQPSFSYSGPLGPPYAAAQPGTRAPSGYSWSPQRSMP 271
Query: 434 --PGYDLQ----RGQGYDM--RRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSA 485
PGY + G GY + RAPS P G+ P + G+ P P P G
Sbjct: 272 PRPGYPVAPTGASGPGYPVVGGRAPS--P----GYPQQPPYLSTGGKPPYPTQPQPSGPL 325
Query: 486 TPPARSGSGQPRGGNP 501
PP G P G P
Sbjct: 326 QPPYPPGPAPPYGFPP 341
Score = 71 (30.1 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 31/144 (21%), Positives = 66/144 (45%)
Query: 43 DMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS 102
+M PE ++ ++A E+Q L E + AT+ +L + Q L+I + S
Sbjct: 14 EMQNDPEAID-RLAQDSPEVQDLQLEREMALATNRSLAERNLEFQGPLEISRSNL----S 68
Query: 103 ERELQMRNLTEKIAKMEAEL-KTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQ 161
++ ++R L E+ + +A+L K + ++L + +++ + EE A + +
Sbjct: 69 DKYQELRKLVERYQEQKAKLEKFSSALQLGTLLDLLQIESMKI-EEESEAMAEKFLEGEV 127
Query: 162 RAHTDVQQIPAL--LSELESLRQE 183
T ++ ++ LS L +R E
Sbjct: 128 PLDTFLENFSSMRTLSHLRRVRVE 151
>UNIPROTKB|F1LRM7 [details] [associations]
symbol:Col2a1 "Collagen alpha-1(II) chain" species:10116
"Rattus norvegicus" [GO:0001502 "cartilage condensation"
evidence=IEA] [GO:0001894 "tissue homeostasis" evidence=IEA]
[GO:0001958 "endochondral ossification" evidence=IEA] [GO:0002062
"chondrocyte differentiation" evidence=IEA] [GO:0003007 "heart
morphogenesis" evidence=IEA] [GO:0005201 "extracellular matrix
structural constituent" evidence=IEA] [GO:0005585 "collagen type
II" evidence=IEA] [GO:0005604 "basement membrane" evidence=IEA]
[GO:0005615 "extracellular space" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006029 "proteoglycan metabolic
process" evidence=IEA] [GO:0007417 "central nervous system
development" evidence=IEA] [GO:0007601 "visual perception"
evidence=IEA] [GO:0007605 "sensory perception of sound"
evidence=IEA] [GO:0010468 "regulation of gene expression"
evidence=IEA] [GO:0030199 "collagen fibril organization"
evidence=IEA] [GO:0030903 "notochord development" evidence=IEA]
[GO:0042472 "inner ear morphogenesis" evidence=IEA] [GO:0042802
"identical protein binding" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0048407
"platelet-derived growth factor binding" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0060174 "limb bud formation"
evidence=IEA] [GO:0060272 "embryonic skeletal joint morphogenesis"
evidence=IEA] [GO:0060351 "cartilage development involved in
endochondral bone morphogenesis" evidence=IEA] [GO:0071599 "otic
vesicle development" evidence=IEA] [GO:0071773 "cellular response
to BMP stimulus" evidence=IEA] InterPro:IPR000885 Pfam:PF01410
ProDom:PD002078 PROSITE:PS51461 SMART:SM00038 RGD:2375
GO:GO:0005581 InterPro:IPR008160 Pfam:PF01391 GO:GO:0005201
GeneTree:ENSGT00660000095287 IPI:IPI00394380
Ensembl:ENSRNOT00000016044 ArrayExpress:F1LRM7 Uniprot:F1LRM7
Length = 1419
Score = 126 (49.4 bits), Expect = 0.00039, P = 0.00039
Identities = 89/301 (29%), Positives = 117/301 (38%)
Query: 235 RAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPP-PSATTA--GVVGA-GPNT 290
R A G G G+ + P G + G G+ GPP P+ G VG GP+
Sbjct: 687 RGAAG-IAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPSG 745
Query: 291 STSAYAAT----QSGTPMRAAYDIPRGP-GYEASKGP-GYDASKAPSYDP-TKGPSYDPA 343
ST A A ++G P A + P G G +KG G K + P +GPS P
Sbjct: 746 STGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGDQGEAGQKGDAGAPGPQGPSGAPG 805
Query: 344 -KGP-GYDPTKGP-GYDAQKGSN-YDAQRG----PNYDIHRGPSYDPQRGLGYDMQRGPN 395
+GP G KG G G+ + G P + + GP+ P G D +G
Sbjct: 806 PQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPA-GPPGPAGKDGPKGAR 864
Query: 396 YDM----QRG-PGYETQR-VPGYDVQRG---PV-YEAQRAPSYIP-QRG-PGYDLQRGQ- 442
D + G PG + PG + G P + P + QRG G QRG+
Sbjct: 865 GDTGAPGRAGDPGLQGPAGAPGEKGEPGDDGPSGSDGPPGPQGLAGQRGIVGLPGQRGER 924
Query: 443 GYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRGGNPA 502
G+ PS +P + G GA P G V PP P G P R GS G P
Sbjct: 925 GFPGLPGPSGEPGK-QGAPGASGDRGPPGPVGPPGLTGPAGE---PGREGS-PGADGPPG 979
Query: 503 R 503
R
Sbjct: 980 R 980
Score = 125 (49.1 bits), Expect = 0.00049, P = 0.00049
Identities = 87/281 (30%), Positives = 99/281 (35%)
Query: 237 ADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGA-GPNTSTS-A 294
ADG G E G G + G P GP G GA GP +T
Sbjct: 773 ADGQPGAKGDQGEAGQKG-DAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFP 831
Query: 295 YAATQSGTPMRAAYDIPRGPGYEASKGP-GYDASKAPSYDP-TKGPSYDPA-KGPGYDP- 350
AA + G P P GP GP G D K D G + DP +GP P
Sbjct: 832 GAAGRVGPPGSNGNPGPAGP-----PGPAGKDGPKGARGDTGAPGRAGDPGLQGPAGAPG 886
Query: 351 TKG-PGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGL-GYDMQRGPN-YDMQRGPGYET- 406
KG PG D GS D GP +G + QRG+ G QRG + GP E
Sbjct: 887 EKGEPGDDGPSGS--DGPPGP-----QGLA--GQRGIVGLPGQRGERGFPGLPGPSGEPG 937
Query: 407 -QRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRR--APSYDPSRG-TGFDG 462
Q PG RGP P PG + G R A RG TG G
Sbjct: 938 KQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGALG 997
Query: 463 APRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRG-GNPA 502
AP P G P P P G +G+ P G PA
Sbjct: 998 APGAPGPPGS-PGPAG--PTGKQGDRGEAGAQGPMGPSGPA 1035
Score = 123 (48.4 bits), Expect = 0.00081, P = 0.00081
Identities = 89/297 (29%), Positives = 110/297 (37%)
Query: 230 PNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSAT---TAGVVGA 286
P DR D GA G + G P G G P GPP A + G
Sbjct: 64 PRGDR--GDKGERGAPGPRGRD--GEP-GTPGNPGPPGPPGPPGPPGLGGGNFAAQMAGG 118
Query: 287 GPNTSTSAYAATQSGTPMRAAYDIPRGP-GYEASKGP-GYDASKAPSYDP-TKGPSYDPA 343
+ A G PM PRGP G + GP G+ + +P GP P
Sbjct: 119 FDEKAGGAQMGVMQG-PMGPMG--PRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPM-GPR 174
Query: 344 KGPGYDPTKGPGYDAQKGSNYDA-QRG-PNYDIHRGPSYDPQRGL-GYDMQRG-PNYDMQ 399
PG P PG D + G A +RG P RG P GL G RG P D
Sbjct: 175 GPPG--PAGKPGDDGEAGKPGKAGERGLPGPQGARGFPGTP--GLPGVKGHRGYPGLDGA 230
Query: 400 RG----PGYETQR-VPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPS--- 451
+G PG + + PG + GP+ + P + GP +G D + P+
Sbjct: 231 KGEAGAPGVKGESGSPGENGSPGPM-GPRGLPGERGRTGPA-GAAGARGNDGQPGPAGPP 288
Query: 452 --YDPSRGTGFDGAP--RG-AAPHGQVPPPLNNVPYGSATPPARSGSGQPRG--GNP 501
P+ G GF GAP +G A P G P GS P GS P G GNP
Sbjct: 289 GPVGPAGGPGFPGAPGAKGEAGPTGARGP---EGAQGSRGEPGNPGSPGPAGASGNP 342
>RGD|2375 [details] [associations]
symbol:Col2a1 "collagen, type II, alpha 1" species:10116 "Rattus
norvegicus" [GO:0001501 "skeletal system development" evidence=ISO]
[GO:0001502 "cartilage condensation" evidence=ISO] [GO:0001894
"tissue homeostasis" evidence=ISO] [GO:0001958 "endochondral
ossification" evidence=ISO] [GO:0002062 "chondrocyte differentiation"
evidence=ISO] [GO:0003007 "heart morphogenesis" evidence=ISO]
[GO:0005201 "extracellular matrix structural constituent"
evidence=TAS] [GO:0005581 "collagen" evidence=ISO] [GO:0005585
"collagen type II" evidence=ISO;TAS] [GO:0005604 "basement membrane"
evidence=ISO] [GO:0005615 "extracellular space" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006029 "proteoglycan
metabolic process" evidence=ISO] [GO:0007601 "visual perception"
evidence=ISO] [GO:0007605 "sensory perception of sound" evidence=ISO]
[GO:0010468 "regulation of gene expression" evidence=ISO] [GO:0030199
"collagen fibril organization" evidence=ISO] [GO:0031012
"extracellular matrix" evidence=ISO] [GO:0035108 "limb morphogenesis"
evidence=ISO] [GO:0042472 "inner ear morphogenesis" evidence=ISO]
[GO:0042802 "identical protein binding" evidence=ISO] [GO:0043066
"negative regulation of apoptotic process" evidence=ISO] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0048407 "platelet-derived
growth factor binding" evidence=ISO] [GO:0048705 "skeletal system
morphogenesis" evidence=ISO] [GO:0048839 "inner ear development"
evidence=ISO] [GO:0051216 "cartilage development" evidence=IEP;ISO]
[GO:0060021 "palate development" evidence=ISO] [GO:0060272 "embryonic
skeletal joint morphogenesis" evidence=ISO] [GO:0060348 "bone
development" evidence=ISO] [GO:0060351 "cartilage development
involved in endochondral bone morphogenesis" evidence=ISO]
[GO:0071773 "cellular response to BMP stimulus" evidence=ISO]
InterPro:IPR000885 Pfam:PF01410 ProDom:PD002078 PROSITE:PS51461
SMART:SM00038 RGD:2375 GO:GO:0046872 GO:GO:0051216 InterPro:IPR008160
Pfam:PF01391 eggNOG:NOG12793 GO:GO:0005201 HOGENOM:HOG000085654
HOVERGEN:HBG004933 KO:K06236 CTD:1280 Reactome:REACT_133391
GO:GO:0005585 EMBL:L48440 EMBL:K02804 EMBL:M10613 EMBL:X79816
IPI:IPI00394380 PIR:A05152 PIR:I60384 RefSeq:NP_037061.1
UniGene:Rn.10124 IntAct:P05539 STRING:P05539 PRIDE:P05539
GeneID:25412 KEGG:rno:25412 UCSC:RGD:2375 NextBio:606543
ArrayExpress:P05539 Genevestigator:P05539
GermOnline:ENSRNOG00000022282 Uniprot:P05539
Length = 1419
Score = 126 (49.4 bits), Expect = 0.00039, P = 0.00039
Identities = 89/301 (29%), Positives = 117/301 (38%)
Query: 235 RAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPP-PSATTA--GVVGA-GPNT 290
R A G G G+ + P G + G G+ GPP P+ G VG GP+
Sbjct: 687 RGAAG-IAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPSG 745
Query: 291 STSAYAAT----QSGTPMRAAYDIPRGP-GYEASKGP-GYDASKAPSYDP-TKGPSYDPA 343
ST A A ++G P A + P G G +KG G K + P +GPS P
Sbjct: 746 STGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGDQGEAGQKGDAGAPGPQGPSGAPG 805
Query: 344 -KGP-GYDPTKGP-GYDAQKGSN-YDAQRG----PNYDIHRGPSYDPQRGLGYDMQRGPN 395
+GP G KG G G+ + G P + + GP+ P G D +G
Sbjct: 806 PQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPA-GPPGPAGKDGPKGAR 864
Query: 396 YDM----QRG-PGYETQR-VPGYDVQRG---PV-YEAQRAPSYIP-QRG-PGYDLQRGQ- 442
D + G PG + PG + G P + P + QRG G QRG+
Sbjct: 865 GDTGAPGRAGDPGLQGPAGAPGEKGEPGDDGPSGSDGPPGPQGLAGQRGIVGLPGQRGER 924
Query: 443 GYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRGGNPA 502
G+ PS +P + G GA P G V PP P G P R GS G P
Sbjct: 925 GFPGLPGPSGEPGK-QGAPGASGDRGPPGPVGPPGLTGPAGE---PGREGS-PGADGPPG 979
Query: 503 R 503
R
Sbjct: 980 R 980
Score = 125 (49.1 bits), Expect = 0.00049, P = 0.00049
Identities = 87/281 (30%), Positives = 99/281 (35%)
Query: 237 ADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGA-GPNTSTS-A 294
ADG G E G G + G P GP G GA GP +T
Sbjct: 773 ADGQPGAKGDQGEAGQKG-DAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFP 831
Query: 295 YAATQSGTPMRAAYDIPRGPGYEASKGP-GYDASKAPSYDP-TKGPSYDPA-KGPGYDP- 350
AA + G P P GP GP G D K D G + DP +GP P
Sbjct: 832 GAAGRVGPPGSNGNPGPAGP-----PGPAGKDGPKGARGDTGAPGRAGDPGLQGPAGAPG 886
Query: 351 TKG-PGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGL-GYDMQRGPN-YDMQRGPGYET- 406
KG PG D GS D GP +G + QRG+ G QRG + GP E
Sbjct: 887 EKGEPGDDGPSGS--DGPPGP-----QGLA--GQRGIVGLPGQRGERGFPGLPGPSGEPG 937
Query: 407 -QRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRR--APSYDPSRG-TGFDG 462
Q PG RGP P PG + G R A RG TG G
Sbjct: 938 KQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGALG 997
Query: 463 APRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRG-GNPA 502
AP P G P P P G +G+ P G PA
Sbjct: 998 APGAPGPPGS-PGPAG--PTGKQGDRGEAGAQGPMGPSGPA 1035
>UNIPROTKB|E7ENY8 [details] [associations]
symbol:COL3A1 "Collagen alpha-1(III) chain" species:9606
"Homo sapiens" [GO:0005201 "extracellular matrix structural
constituent" evidence=IEA] [GO:0005581 "collagen" evidence=IEA]
InterPro:IPR000885 InterPro:IPR001007 Pfam:PF00093 Pfam:PF01410
ProDom:PD002078 PROSITE:PS01208 PROSITE:PS50184 PROSITE:PS51461
SMART:SM00038 SMART:SM00214 GO:GO:0005581 InterPro:IPR008160
Pfam:PF01391 GO:GO:0005201 EMBL:AC066694 HGNC:HGNC:2201
ChiTaRS:COL3A1 IPI:IPI00981037 PDB:4GYX PDBsum:4GYX
ProteinModelPortal:E7ENY8 SMR:E7ENY8 PRIDE:E7ENY8
Ensembl:ENST00000317840 ArrayExpress:E7ENY8 Bgee:E7ENY8
Uniprot:E7ENY8
Length = 1163
Score = 125 (49.1 bits), Expect = 0.00039, P = 0.00039
Identities = 82/286 (28%), Positives = 103/286 (36%)
Query: 231 NVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGA-GP- 288
+V A G G G + P G + + G P GPP AG G GP
Sbjct: 159 DVKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPP 218
Query: 289 ---NTSTSAYAATQSGTPMRAAY-DIPRGPGYEASKG-PGYDASKAP-SYDPTKGPSYDP 342
S A +SG P R +P PG + G PG+ K +D G +
Sbjct: 219 GAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGET 278
Query: 343 AKGPGYDPTKG-PGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGL-GYDMQRGPNYDMQR 400
PG G PG + G RG + R P G G D RG D Q
Sbjct: 279 G-APGLKGENGLPGENGAPGPM--GPRGAPGERGR-PGLPGAAGARGNDGARGS--DGQP 332
Query: 401 GP-GYE-TQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGT 458
GP G T PG +G V A S PG QRG+ A + P
Sbjct: 333 GPPGPPGTAGFPGSPGAKGEVGPAGSPGS---NGAPG---QRGEPGPQGHAGAQGPPGPP 386
Query: 459 GFDGAPRGAAPHGQVPPPLNNVP--YGSATPPARSGS-GQP--RGG 499
G +G+P G G P + P G+ PP +G+ G P RGG
Sbjct: 387 GINGSPGGKGEMG--PAGIPGAPGLMGARGPPGPAGANGAPGLRGG 430
>WB|WBGene00001734 [details] [associations]
symbol:grl-25 species:6239 "Caenorhabditis elegans"
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] GO:GO:0009792
GO:GO:0040010 GO:GO:0000003 EMBL:Z11126
GeneTree:ENSGT00570000079107 EMBL:Z12018 RefSeq:NP_001023025.1
ProteinModelPortal:G5EDQ6 EnsemblMetazoa:ZK643.8 GeneID:176265
KEGG:cel:CELE_ZK643.8 CTD:176265 WormBase:ZK643.8 OMA:QYLGAYA
NextBio:891834 Uniprot:G5EDQ6
Length = 774
Score = 123 (48.4 bits), Expect = 0.00039, P = 0.00039
Identities = 71/279 (25%), Positives = 102/279 (36%)
Query: 236 AADGSYGGATGNSENETSGRPV----GQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTS 291
A+ S GG +G E+ +SG G ++ G G G S++++G G ++S
Sbjct: 342 ASSSSGGGYSGGGESSSSGGSSYSSGGDSSSSSGGGYSSGGDSSSSSSSSGGYSGGSDSS 401
Query: 292 TSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGP----SYDPAKGPG 347
+S+ ++ SG D G E+S GY S + + + G S +PA P
Sbjct: 402 SSS--SSSSGGYSSGGGDAGASSGGESSSAGGYSGSSSSGGEASSGGYSGGSSEPAPAPE 459
Query: 348 YDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQ 407
P GY GS + P PS G + P G E
Sbjct: 460 AAPASSGGYSG--GSEAAPEAAP-----AAPS-GGYSGSEAAPEAAPAAPSGGYSGSEAA 511
Query: 408 RVPGYDVQRGPVYEAQRAPSYIPQR-GPGYDLQRGQGYDMRRAPSYDPSRG-TGFDGAPR 465
G ++ AP P GY G AP+ PS G +G + AP
Sbjct: 512 PEAAPAAPSGGYSGSEAAPEAAPAAPSGGYS---GSEAAPEAAPAA-PSGGYSGSEAAPE 567
Query: 466 GA--APHGQVPPPLNNVPYGSATPPARSGSGQPRGGNPA 502
A AP G ++ P +A PA S G GG A
Sbjct: 568 AAPAAPSGGYSGSESSAP--AAPEPAPSSGGYSGGGGDA 604
>RGD|61817 [details] [associations]
symbol:Col1a1 "collagen, type I, alpha 1" species:10116 "Rattus
norvegicus" [GO:0001501 "skeletal system development" evidence=ISO]
[GO:0001503 "ossification" evidence=IEP] [GO:0001568 "blood vessel
development" evidence=IEA;ISO] [GO:0001649 "osteoblast
differentiation" evidence=IEA] [GO:0001957 "intramembranous
ossification" evidence=IEA;ISO] [GO:0001958 "endochondral
ossification" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005201 "extracellular matrix structural
constituent" evidence=IEA;ISO] [GO:0005578 "proteinaceous
extracellular matrix" evidence=ISO] [GO:0005581 "collagen"
evidence=ISO] [GO:0005584 "collagen type I" evidence=IEA;ISO]
[GO:0005615 "extracellular space" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0007584 "response to nutrient"
evidence=IEP] [GO:0007601 "visual perception" evidence=IEA;ISO]
[GO:0007605 "sensory perception of sound" evidence=IEA;ISO]
[GO:0009612 "response to mechanical stimulus" evidence=IEP]
[GO:0010035 "response to inorganic substance" evidence=IEP]
[GO:0010718 "positive regulation of epithelial to mesenchymal
transition" evidence=IEA;ISO] [GO:0010812 "negative regulation of
cell-substrate adhesion" evidence=IEA;ISO] [GO:0015031 "protein
transport" evidence=IEA;ISO] [GO:0030199 "collagen fibril
organization" evidence=IEA;ISO] [GO:0030335 "positive regulation of
cell migration" evidence=IEA;ISO] [GO:0031012 "extracellular matrix"
evidence=ISO] [GO:0031960 "response to corticosteroid stimulus"
evidence=IEP] [GO:0032964 "collagen biosynthetic process"
evidence=IEA;ISO] [GO:0034504 "protein localization to nucleus"
evidence=IEA;ISO] [GO:0034505 "tooth mineralization"
evidence=IEA;ISO] [GO:0042060 "wound healing" evidence=IMP]
[GO:0042542 "response to hydrogen peroxide" evidence=IEP]
[GO:0042802 "identical protein binding" evidence=IEA;ISO]
[GO:0043434 "response to peptide hormone stimulus" evidence=IEP]
[GO:0043588 "skin development" evidence=ISO] [GO:0043589 "skin
morphogenesis" evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA;ISO] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0048407 "platelet-derived growth
factor binding" evidence=IEA;ISO] [GO:0048705 "skeletal system
morphogenesis" evidence=ISO] [GO:0048706 "embryonic skeletal system
development" evidence=IEA;ISO] [GO:0051591 "response to cAMP"
evidence=IEP] [GO:0060325 "face morphogenesis" evidence=IEA;ISO]
[GO:0060346 "bone trabecula formation" evidence=IEA;ISO] [GO:0060351
"cartilage development involved in endochondral bone morphogenesis"
evidence=IEA;ISO] [GO:0070208 "protein heterotrimerization"
evidence=IEA;ISO] [GO:0071230 "cellular response to amino acid
stimulus" evidence=IEA;ISO] [GO:0071260 "cellular response to
mechanical stimulus" evidence=IEA] [GO:0071300 "cellular response to
retinoic acid" evidence=IEP] [GO:0071363 "cellular response to
growth factor stimulus" evidence=IEP] [GO:0071560 "cellular response
to transforming growth factor beta stimulus" evidence=IEP]
[GO:0090263 "positive regulation of canonical Wnt receptor signaling
pathway" evidence=IEA;ISO] InterPro:IPR000885 InterPro:IPR001007
Pfam:PF00093 Pfam:PF01410 ProDom:PD002078 PROSITE:PS01208
PROSITE:PS50184 PROSITE:PS51461 SMART:SM00038 SMART:SM00214
RGD:61817 GO:GO:0005737 GO:GO:0045893 GO:GO:0005615 GO:GO:0009612
GO:GO:0071560 GO:GO:0046872 GO:GO:0015031 GO:GO:0007601
GO:GO:0071300 GO:GO:0043434 GO:GO:0030199 GO:GO:0007584
GO:GO:0010035 GO:GO:0007605 GO:GO:0010718 GO:GO:0030335
GO:GO:0042542 GO:GO:0070208 InterPro:IPR008160 Pfam:PF01391
eggNOG:NOG12793 GO:GO:0042060 GO:GO:0071260 GO:GO:0001568
GO:GO:0001649 GO:GO:0051591 GO:GO:0034505 GO:GO:0090263
GO:GO:0001503 GO:GO:0010812 GO:GO:0060325 EMBL:CH473948
GO:GO:0032964 GO:GO:0071230 GO:GO:0048706 GO:GO:0001957
GO:GO:0034504 GO:GO:0001958 GO:GO:0060351 GO:GO:0005201
GO:GO:0043589 CTD:1277 GeneTree:ENSGT00660000095287
HOGENOM:HOG000085654 HOVERGEN:HBG004933 KO:K06236 OMA:VAYMDQQ
GO:GO:0005584 GO:GO:0060346 GO:GO:0031960 EMBL:Z78279 EMBL:BC133728
EMBL:M11432 IPI:IPI00188909 PIR:A90559 RefSeq:NP_445756.1
UniGene:Rn.2953 PDB:3HQV PDB:3HR2 PDBsum:3HQV PDBsum:3HR2
ProteinModelPortal:P02454 IntAct:P02454 STRING:P02454 PRIDE:P02454
Ensembl:ENSRNOT00000005311 GeneID:29393 KEGG:rno:29393
UCSC:RGD:61817 InParanoid:A3KNA1 Reactome:REACT_150387
EvolutionaryTrace:P02454 NextBio:609017 ArrayExpress:P02454
Genevestigator:P02454 GermOnline:ENSRNOG00000003897 Uniprot:P02454
Length = 1453
Score = 126 (49.4 bits), Expect = 0.00040, P = 0.00040
Identities = 88/285 (30%), Positives = 108/285 (37%)
Query: 237 ADGSYG--GATGNSENETSGRPVGQNAYEDGYGVPQGH-GPPPSATTAGVVGAGPNTSTS 293
ADG G G G++ + P G A G P G+ G P + G G P +
Sbjct: 808 ADGQPGAKGEPGDTGVKGDAGPPGP-AGPAGPPGPIGNVGAPGPKGSRGAAGP-PGATGF 865
Query: 294 AYAATQSGTPMRAAYDIPRGP----GYEASKGPGYDASKA--PSYDPTKGPSYDPA--KG 345
AA + G P + P GP G E KGP + A P GP PA KG
Sbjct: 866 PGAAGRVGPPGPSGNAGPPGPPGPVGKEGGKGPRGETGPAGRPGEVGPPGPP-GPAGEKG 924
Query: 346 -PGYD-P-----TKGP-GYDAQKGS-NYDAQRGPN-YDIHRGPSYDP-QRG-LGYDMQRG 393
PG D P T GP G Q+G QRG + GPS +P ++G G +RG
Sbjct: 925 SPGADGPAGSPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERG 984
Query: 394 PNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYD 453
P M GP PG GP E+ R S + PG D G D
Sbjct: 985 PPGPM--GP-------PGL---AGPPGESGREGSPGAEGSPGRDGAPGAKGDRGETGPAG 1032
Query: 454 PSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRG 498
P G GAP P G+ P G A P +G+ P G
Sbjct: 1033 PPGAPGAPGAPGPVGPAGKNGDRGETGPAGPAGPIGPAGARGPAG 1077
>UNIPROTKB|Q02388 [details] [associations]
symbol:COL7A1 "Collagen alpha-1(VII) chain" species:9606
"Homo sapiens" [GO:0004867 "serine-type endopeptidase inhibitor
activity" evidence=IEA] [GO:0007155 "cell adhesion" evidence=IEA]
[GO:0005604 "basement membrane" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005590 "collagen type VII"
evidence=TAS] [GO:0008544 "epidermis development" evidence=TAS]
[GO:0005576 "extracellular region" evidence=TAS] [GO:0005788
"endoplasmic reticulum lumen" evidence=TAS] [GO:0030198
"extracellular matrix organization" evidence=TAS] [GO:0031012
"extracellular matrix" evidence=ISS] InterPro:IPR002035
InterPro:IPR002223 InterPro:IPR003961 Pfam:PF00014 Pfam:PF00041
Pfam:PF00092 PRINTS:PR00759 PROSITE:PS50234 PROSITE:PS50279
PROSITE:PS50853 SMART:SM00060 SMART:SM00327 Reactome:REACT_118779
Gene3D:2.60.40.10 InterPro:IPR013783 GO:GO:0004867 SUPFAM:SSF49265
GO:GO:0030198 GO:GO:0007155 Gene3D:4.10.410.10 InterPro:IPR020901
SUPFAM:SSF57362 PROSITE:PS00280 GO:GO:0005788 InterPro:IPR008160
Pfam:PF01391 eggNOG:NOG12793 GO:GO:0008544 GO:GO:0005604
EMBL:L23982 EMBL:L02870 EMBL:D13694 EMBL:M96984 EMBL:S51236
EMBL:M65158 EMBL:L06862 IPI:IPI00025418 IPI:IPI00795118 PIR:A54849
RefSeq:NP_000085.1 UniGene:Hs.476218 ProteinModelPortal:Q02388
SMR:Q02388 IntAct:Q02388 MINT:MINT-1390694 STRING:Q02388
MEROPS:I02.967 PhosphoSite:Q02388 DMDM:1345650 PaxDb:Q02388
PRIDE:Q02388 Ensembl:ENST00000328333 Ensembl:ENST00000454817
GeneID:1294 KEGG:hsa:1294 UCSC:uc003ctz.2 CTD:1294
GeneCards:GC03M048576 HGNC:HGNC:2214 HPA:CAB016357 MIM:120120
MIM:131705 MIM:131750 MIM:131850 MIM:132000 MIM:226600 MIM:604129
MIM:607523 neXtProt:NX_Q02388 Orphanet:158673 Orphanet:79407
Orphanet:216989 Orphanet:79408 Orphanet:89842 Orphanet:89841
Orphanet:79409 Orphanet:89839 Orphanet:158676 Orphanet:79410
Orphanet:89843 Orphanet:79411 PharmGKB:PA26730 HOGENOM:HOG000111866
HOVERGEN:HBG051053 InParanoid:Q02388 KO:K16628 OMA:RRVCTTA
OrthoDB:EOG4J117P PhylomeDB:Q02388 ChiTaRS:COL7A1 GenomeRNAi:1294
NextBio:5251 ArrayExpress:Q02388 Bgee:Q02388 CleanEx:HS_COL7A1
Genevestigator:Q02388 GermOnline:ENSG00000114270 GO:GO:0005590
Uniprot:Q02388
Length = 2944
Score = 129 (50.5 bits), Expect = 0.00041, P = 0.00041
Identities = 83/269 (30%), Positives = 99/269 (36%)
Query: 256 PVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPG 315
P G G P GPP SAT G G P A + G+P RA P PG
Sbjct: 1270 PPGDPGLPGRTGAPGPQGPPGSATAKGERGF-PG------ADGRPGSPGRAGN--PGTPG 1320
Query: 316 YEASKG-PGYDASKA-PSYDPTKGPSYDPAKGPGYD-PTKGPGYDAQKG----SNYDAQR 368
KG PG + P +GP +P PG +GPG +KG S R
Sbjct: 1321 APGLKGSPGLPGPRGDPGERGPRGPKGEPG-APGQVIGGEGPGLPGRKGDPGPSGPPGPR 1379
Query: 369 GPNYDIHRGPSYDPQRGLGYDMQRGPNYDM-QRGP-GY-ETQRVPGYDVQRG-PVYEAQR 424
GP D GP P GL +G D +RGP G E PG + G P
Sbjct: 1380 GPLGD--PGPRGPP--GLPGTAMKGDKGDRGERGPPGPGEGGIAPG---EPGLPGLPGSP 1432
Query: 425 APSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGA----APHGQ--VPPPLN 478
P P PG ++G D AP G+ + PRG P G P PL
Sbjct: 1433 GPQG-PVGPPGKKGEKGDSED--GAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGFPGPLG 1489
Query: 479 NV-PYGSATPPARSGS-GQPR-GGNPARR 504
G PP +GS G P G P +
Sbjct: 1490 EAGEKGERGPPGPAGSRGLPGVAGRPGAK 1518
>UNIPROTKB|F1LN37 [details] [associations]
symbol:Col2a1 "Collagen alpha-1(II) chain" species:10116
"Rattus norvegicus" [GO:0005201 "extracellular matrix structural
constituent" evidence=IEA] [GO:0005581 "collagen" evidence=IEA]
InterPro:IPR000885 InterPro:IPR001007 Pfam:PF00093 Pfam:PF01410
ProDom:PD002078 PROSITE:PS01208 PROSITE:PS50184 PROSITE:PS51461
SMART:SM00038 SMART:SM00214 RGD:2375 GO:GO:0005737 GO:GO:0043066
GO:GO:0005615 GO:GO:0003007 GO:GO:0007601 GO:GO:0030199
GO:GO:0007417 GO:GO:0042472 GO:GO:0001894 GO:GO:0007605
GO:GO:0071773 InterPro:IPR008160 Pfam:PF01391 GO:GO:0071599
GO:GO:0005604 GO:GO:0001502 GO:GO:0060021 GO:GO:0002062
GO:GO:0010468 GO:GO:0060272 GO:GO:0006029 GO:GO:0001958
GO:GO:0060351 GO:GO:0005201 GO:GO:0005585 GO:GO:0060174
GO:GO:0030903 IPI:IPI00388575 Ensembl:ENSRNOT00000037840
ArrayExpress:F1LN37 Uniprot:F1LN37
Length = 1487
Score = 126 (49.4 bits), Expect = 0.00041, P = 0.00041
Identities = 89/301 (29%), Positives = 117/301 (38%)
Query: 235 RAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPP-PSATTA--GVVGA-GPNT 290
R A G G G+ + P G + G G+ GPP P+ G VG GP+
Sbjct: 755 RGAAG-IAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPSG 813
Query: 291 STSAYAAT----QSGTPMRAAYDIPRGP-GYEASKGP-GYDASKAPSYDP-TKGPSYDPA 343
ST A A ++G P A + P G G +KG G K + P +GPS P
Sbjct: 814 STGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGDQGEAGQKGDAGAPGPQGPSGAPG 873
Query: 344 -KGP-GYDPTKGP-GYDAQKGSN-YDAQRG----PNYDIHRGPSYDPQRGLGYDMQRGPN 395
+GP G KG G G+ + G P + + GP+ P G D +G
Sbjct: 874 PQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPA-GPPGPAGKDGPKGAR 932
Query: 396 YDM----QRG-PGYETQR-VPGYDVQRG---PV-YEAQRAPSYIP-QRG-PGYDLQRGQ- 442
D + G PG + PG + G P + P + QRG G QRG+
Sbjct: 933 GDTGAPGRAGDPGLQGPAGAPGEKGEPGDDGPSGSDGPPGPQGLAGQRGIVGLPGQRGER 992
Query: 443 GYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRGGNPA 502
G+ PS +P + G GA P G V PP P G P R GS G P
Sbjct: 993 GFPGLPGPSGEPGK-QGAPGASGDRGPPGPVGPPGLTGPAGE---PGREGS-PGADGPPG 1047
Query: 503 R 503
R
Sbjct: 1048 R 1048
Score = 125 (49.1 bits), Expect = 0.00052, P = 0.00052
Identities = 87/281 (30%), Positives = 99/281 (35%)
Query: 237 ADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGA-GPNTSTS-A 294
ADG G E G G + G P GP G GA GP +T
Sbjct: 841 ADGQPGAKGDQGEAGQKG-DAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFP 899
Query: 295 YAATQSGTPMRAAYDIPRGPGYEASKGP-GYDASKAPSYDP-TKGPSYDPA-KGPGYDP- 350
AA + G P P GP GP G D K D G + DP +GP P
Sbjct: 900 GAAGRVGPPGSNGNPGPAGP-----PGPAGKDGPKGARGDTGAPGRAGDPGLQGPAGAPG 954
Query: 351 TKG-PGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGL-GYDMQRGPN-YDMQRGPGYET- 406
KG PG D GS D GP +G + QRG+ G QRG + GP E
Sbjct: 955 EKGEPGDDGPSGS--DGPPGP-----QGLA--GQRGIVGLPGQRGERGFPGLPGPSGEPG 1005
Query: 407 -QRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRR--APSYDPSRG-TGFDG 462
Q PG RGP P PG + G R A RG TG G
Sbjct: 1006 KQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGALG 1065
Query: 463 APRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRG-GNPA 502
AP P G P P P G +G+ P G PA
Sbjct: 1066 APGAPGPPGS-PGPAG--PTGKQGDRGEAGAQGPMGPSGPA 1103
Score = 123 (48.4 bits), Expect = 0.00086, P = 0.00086
Identities = 89/297 (29%), Positives = 110/297 (37%)
Query: 230 PNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSAT---TAGVVGA 286
P DR D GA G + G P G G P GPP A + G
Sbjct: 132 PRGDR--GDKGERGAPGPRGRD--GEP-GTPGNPGPPGPPGPPGPPGLGGGNFAAQMAGG 186
Query: 287 GPNTSTSAYAATQSGTPMRAAYDIPRGP-GYEASKGP-GYDASKAPSYDP-TKGPSYDPA 343
+ A G PM PRGP G + GP G+ + +P GP P
Sbjct: 187 FDEKAGGAQMGVMQG-PMGPMG--PRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPM-GPR 242
Query: 344 KGPGYDPTKGPGYDAQKGSNYDA-QRG-PNYDIHRGPSYDPQRGL-GYDMQRG-PNYDMQ 399
PG P PG D + G A +RG P RG P GL G RG P D
Sbjct: 243 GPPG--PAGKPGDDGEAGKPGKAGERGLPGPQGARGFPGTP--GLPGVKGHRGYPGLDGA 298
Query: 400 RG----PGYETQR-VPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPS--- 451
+G PG + + PG + GP+ + P + GP +G D + P+
Sbjct: 299 KGEAGAPGVKGESGSPGENGSPGPM-GPRGLPGERGRTGPA-GAAGARGNDGQPGPAGPP 356
Query: 452 --YDPSRGTGFDGAP--RG-AAPHGQVPPPLNNVPYGSATPPARSGSGQPRG--GNP 501
P+ G GF GAP +G A P G P GS P GS P G GNP
Sbjct: 357 GPVGPAGGPGFPGAPGAKGEAGPTGARGP---EGAQGSRGEPGNPGSPGPAGASGNP 410
>ZFIN|ZDB-GENE-980526-192 [details] [associations]
symbol:col2a1a "collagen type II, alpha-1a"
species:7955 "Danio rerio" [GO:0005581 "collagen" evidence=IEA;ISS]
[GO:0005201 "extracellular matrix structural constituent"
evidence=IEA] [GO:0030903 "notochord development" evidence=IGI]
InterPro:IPR000885 InterPro:IPR001007 Pfam:PF00093 Pfam:PF01410
ProDom:PD002078 PROSITE:PS01208 PROSITE:PS50184 PROSITE:PS51461
SMART:SM00038 SMART:SM00214 ZFIN:ZDB-GENE-980526-192 GO:GO:0005581
InterPro:IPR008160 Pfam:PF01391 GO:GO:0005201
GeneTree:ENSGT00660000095287 HOVERGEN:HBG004933 KO:K06236
GO:GO:0030903 EMBL:BX927144 EMBL:DQ335127 IPI:IPI00505438
RefSeq:NP_571367.1 UniGene:Dr.75057 SMR:Q2LDA1 STRING:Q2LDA1
Ensembl:ENSDART00000100234 GeneID:562496 KEGG:dre:562496 CTD:562496
InParanoid:Q2LDA1 NextBio:20884441 Uniprot:Q2LDA1
Length = 1491
Score = 126 (49.4 bits), Expect = 0.00041, P = 0.00041
Identities = 83/270 (30%), Positives = 96/270 (35%)
Query: 243 GATGNSENETSGRPVGQNAYEDGYGVPQG-HGPPPSATTAGVVGA-GPNTSTSAYAATQ- 299
GA G N+ GQ + G PQG G P GV G G + A AT
Sbjct: 844 GADGQPGNKGEQGESGQKG-DSGAPGPQGPSGAPGPVGPTGVTGPKGARGAQGAPGATGF 902
Query: 300 SGTPMRAAYDIPRG-PGYEASKGP-GYDASKAPSYDP-TKGPSYDPA-KGP-GYDPTKGP 354
G R P G PG GP G D K D G + D +GP G KG
Sbjct: 903 PGAAGRVGPPGPNGNPGAAGPAGPSGKDGPKGVRGDAGPPGRAGDAGLRGPPGAPGEKGE 962
Query: 355 -GYDAQKGSNYDAQRGP-NYDIHRGPSYDP-QRG-LGYDMQRGPNYD--MQRGPGYETQR 408
G D G D GP RG P QRG G+ GP+ + Q PG R
Sbjct: 963 AGEDGPPGP--DGPSGPAGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGSGDR 1020
Query: 409 VP----GYDVQRGPVYEAQRAPSYIPQRGPGYDLQRG-QGYDMRRAPSYDPSRGTGFDGA 463
P G GP E R + PG D G +G P P G GA
Sbjct: 1021 GPPGPVGPPGLTGPAGETGREGNPGSDGPPGRDGAAGVKGERGNTGPIGAPG-APGAPGA 1079
Query: 464 PRGAAPHGQVPPPLNNVPYGSATPPARSGS 493
P P G+ N P G A PP +G+
Sbjct: 1080 PGSVGPIGKQGDRGENGPQGPAGPPGPAGA 1109
>UNIPROTKB|A7E348 [details] [associations]
symbol:PYGO2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0060070 "canonical Wnt receptor signaling pathway"
evidence=IEA] [GO:0060021 "palate development" evidence=IEA]
[GO:0051569 "regulation of histone H3-K4 methylation" evidence=IEA]
[GO:0048589 "developmental growth" evidence=IEA] [GO:0042393
"histone binding" evidence=IEA] [GO:0033599 "regulation of mammary
gland epithelial cell proliferation" evidence=IEA] [GO:0030879
"mammary gland development" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0002088 "lens development in camera-type eye" evidence=IEA]
[GO:0001822 "kidney development" evidence=IEA] [GO:0001701 "in
utero embryonic development" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR019787
Pfam:PF00628 PROSITE:PS50016 SMART:SM00249 GO:GO:0005634
GO:GO:0007420 GO:GO:0046872 GO:GO:0008270 GO:GO:0001701
GO:GO:0009791 GO:GO:0001822 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0048589 InterPro:IPR019786
PROSITE:PS01359 GO:GO:0060021 GO:GO:0060070 GO:GO:0030879
GO:GO:0033599 GO:GO:0051569 GO:GO:0002088 eggNOG:NOG72798
HOGENOM:HOG000001580 HOVERGEN:HBG053774
GeneTree:ENSGT00530000063948 CTD:90780 OMA:PGLVYPC
OrthoDB:EOG4QZ7MB EMBL:DAAA02007156 EMBL:BC151715 IPI:IPI00866934
RefSeq:NP_001095712.1 UniGene:Bt.102068 SMR:A7E348
Ensembl:ENSBTAT00000005670 GeneID:540401 KEGG:bta:540401
InParanoid:A7E348 NextBio:20878610 Uniprot:A7E348
Length = 405
Score = 119 (46.9 bits), Expect = 0.00043, P = 0.00043
Identities = 70/263 (26%), Positives = 99/263 (37%)
Query: 257 VGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGY 316
V N +ED +G P+ G P + V G Q G A +P G G
Sbjct: 73 VASNPFEDDFGAPKVGGAAPPFLGSPVPFGG--------FRVQGGM----AGQVPPGYGT 120
Query: 317 EASKGPGYDASKAPSYDPTK-GPSYD-PAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDI 374
GP + P + P+ GP+++ P +GPGY P + +Q ++ G N+
Sbjct: 121 GGGGGPQPLRRQPPPFPPSPMGPAFNMPPQGPGYPPPGNMNFPSQP---FNQPLGQNFSP 177
Query: 375 HRGPSYD-PQRGLGY----DMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYE--AQRAPS 427
G P G G M + P ++ GP QR GP + Q PS
Sbjct: 178 PGGQMMPGPVGGFGPMISPTMGQPPRGEL--GPPSLPQRFAQPGAPFGPSLQRPGQGLPS 235
Query: 428 YIPQRGP--GYDLQ-RGQGYDMRRAPSYDPSRGTGFDGAPRGAAP----HGQVPP-PLNN 479
P P G D G G + P +P T F P +P +G P P N+
Sbjct: 236 LPPNTSPFPGPDPGFPGPGGEDGGKP-LNPPAATAFPQEPHSGSPAAAVNGNQPSFPPNS 294
Query: 480 VPYGSATPPARSGS--GQPRGGN 500
G TP A S + G+ GG+
Sbjct: 295 SGRGGGTPDANSLAPPGKAGGGS 317
>UNIPROTKB|G4MYW7 [details] [associations]
symbol:MGG_10829 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000571 PROSITE:PS50103 GO:GO:0008270 GO:GO:0003676
EMBL:CM001232 InterPro:IPR019496 Pfam:PF10453 RefSeq:XP_003713435.1
EnsemblFungi:MGG_10829T0 GeneID:2676344 KEGG:mgr:MGG_10829
Uniprot:G4MYW7
Length = 600
Score = 121 (47.7 bits), Expect = 0.00046, P = 0.00046
Identities = 61/238 (25%), Positives = 82/238 (34%)
Query: 271 GHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYD--IPRGPGYEASKGPGYDASK 328
G+GPPP GA P Y Q + PRG G A G G
Sbjct: 5 GYGPPPPPPA----GAPPQAYQQQYGQYQQPPATGHVHGGHAPRG-GRGAHSGRGDFHGS 59
Query: 329 APSYDPTKGPSYDPA-KGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLG 387
PSY P P+ GP + P P + NY P + ++ P Y Q+
Sbjct: 60 PPSYPYNNQPQPPPSYTGPHHAPP--PPHTPLAPQNYHPNYAPQH--YQQPQYAHQQQYP 115
Query: 388 YDMQRGPNYDMQRGPGYETQRVPGY-DVQRGPVYEAQRAPSYIPQR--GPG-YDLQRGQG 443
+ + P Q+ P Y P Y P ++ P+ + GP Y RG+G
Sbjct: 116 HQQPQQPPQPPQQAP-Y-AHHYPSYPQAPNAPPHQPWGGPATAGHQPAGPAHYGSGRGRG 173
Query: 444 YDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRGGNP 501
+ P+ G G G PP L V + PP G P+GG P
Sbjct: 174 GHQGDRGGHKPAAAMG-PPLRMGFDNRGPEPPAL--VSSATVYPP--QPFGPPQGGAP 226
>UNIPROTKB|Q5T171 [details] [associations]
symbol:PYGO2 "Pygopus homolog 2" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0001701
"in utero embryonic development" evidence=IEA] [GO:0001822 "kidney
development" evidence=IEA] [GO:0002088 "lens development in
camera-type eye" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007420 "brain development" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IEA] [GO:0030879 "mammary
gland development" evidence=IEA] [GO:0033599 "regulation of mammary
gland epithelial cell proliferation" evidence=IEA] [GO:0042393
"histone binding" evidence=IEA] [GO:0048589 "developmental growth"
evidence=IEA] [GO:0051569 "regulation of histone H3-K4 methylation"
evidence=IEA] [GO:0060021 "palate development" evidence=IEA]
[GO:0060070 "canonical Wnt receptor signaling pathway"
evidence=IEA] InterPro:IPR001965 InterPro:IPR019787 Pfam:PF00628
PROSITE:PS50016 SMART:SM00249 GO:GO:0005634 GO:GO:0007420
GO:GO:0046872 GO:GO:0008270 GO:GO:0001701 GO:GO:0009791
GO:GO:0001822 EMBL:AL451085 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0048589 InterPro:IPR019786
PROSITE:PS01359 GO:GO:0060021 EMBL:CH471121 GO:GO:0060070
GO:GO:0030879 GO:GO:0033599 GO:GO:0051569 GO:GO:0002088
HOGENOM:HOG000001580 HOVERGEN:HBG053774 UniGene:Hs.533597
HGNC:HGNC:30257 IPI:IPI00642524 SMR:Q5T171 STRING:Q5T171
Ensembl:ENST00000368456 Uniprot:Q5T171
Length = 369
Score = 118 (46.6 bits), Expect = 0.00047, P = 0.00047
Identities = 72/267 (26%), Positives = 101/267 (37%)
Query: 257 VGQNAYEDGYGVPQ-GHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPG 315
V N +ED +G P+ G PP + G Q G A +P PG
Sbjct: 36 VASNPFEDDFGAPKVGVAAPPFLGSPVPFGG---------FRVQGGM----AGQVP--PG 80
Query: 316 YEASKGPGYDASKA--PSYDPTK-GPSYD-PAKGPGYDPTKGPGYDAQKGSNYDAQRGPN 371
Y G G + P + P GP+++ P +GPGY P + +Q ++ G N
Sbjct: 81 YSTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQP---FNQPLGQN 137
Query: 372 YDIHRGPSYD-PQRGLGY----DMQRGPNYDMQRGPGYETQRV--PGYDVQRGPVYE-AQ 423
+ G P G G M + P ++ GP +QR PG P+ Q
Sbjct: 138 FSPPSGQMMPGPVGGFGPMISPTMGQPPRAEL--GPPSLSQRFAQPGAPFGPSPLQRPGQ 195
Query: 424 RAPSYIPQRGP--GYDLQ-RGQGYDMRRAPSYDPSRGTGFDGAPRGAAP----HGQVPP- 475
PS P P G D G G + P +P T F P +P +G P
Sbjct: 196 GLPSLPPNTSPFPGPDPGFPGPGGEDGGKP-LNPPASTAFPQEPHSGSPAAAVNGNQPSF 254
Query: 476 PLNNVPYGSATPPARSGS--GQPRGGN 500
P N+ G TP A S + G+ GG+
Sbjct: 255 PPNSSGRGGGTPDANSLAPPGKAGGGS 281
>WB|WBGene00010306 [details] [associations]
symbol:F59A2.6 species:6239 "Caenorhabditis elegans"
[GO:0000042 "protein targeting to Golgi" evidence=IEA]
InterPro:IPR000237 Pfam:PF01465 PROSITE:PS50913 SMART:SM00755
EMBL:Z34801 GeneTree:ENSGT00700000104373 GO:GO:0000042
Gene3D:1.10.220.60 SUPFAM:SSF101283 EMBL:Z66514 PIR:T22976
RefSeq:NP_497706.1 UniGene:Cel.10377 HSSP:Q13439
ProteinModelPortal:G5EEK2 SMR:G5EEK2 IntAct:G5EEK2
EnsemblMetazoa:F59A2.6 GeneID:175445 KEGG:cel:CELE_F59A2.6
CTD:175445 WormBase:F59A2.6 OMA:QTRKDID NextBio:888194
Uniprot:G5EEK2
Length = 1133
Score = 124 (48.7 bits), Expect = 0.00049, P = 0.00049
Identities = 51/194 (26%), Positives = 90/194 (46%)
Query: 51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRN 110
+E + + QKL T ++ L A T + A E+ +L + K ++ Q++N
Sbjct: 458 LENSNSETEILKQKLETLDKELQARQQTEK----ALTEEINVLTTSLAE-KEQQTAQIQN 512
Query: 111 LTEKIAKMEAELKT-AEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAH-TDVQ 168
L +I +ME E + E VK++ Q++ AQ+ A E L A++ QL L+ +
Sbjct: 513 LQTQIYQMEVEKEEKVELVKVQLQQA---AQSSSSAEEALRAEIEQLEAKLKAVEQAKAE 569
Query: 169 QIPALLSELESLRQEYHHCRGTYEYEK-KFYNDHLE-SLQVMEKNYITMATEVEKLRAEL 226
+ +LL+E E L+ + H G + EK + L+ + Q + E+EKL A+L
Sbjct: 570 ALNSLLAEKEHLQAQLHQL-GVEKEEKLEMVKVQLQQAAQSSSSVEQALRAEIEKLEAKL 628
Query: 227 MNAPNVDRRAADGS 240
+ A + S
Sbjct: 629 QEIEEEKKNALNAS 642
>UNIPROTKB|E1BT66 [details] [associations]
symbol:TAF15 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00641 PROSITE:PS01358
PROSITE:PS50102 PROSITE:PS50199 SMART:SM00360 SMART:SM00547
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00530000063105
OMA:YGNQGSQ EMBL:AADN02025953 EMBL:AADN02025954 IPI:IPI00575015
ProteinModelPortal:E1BT66 Ensembl:ENSGALT00000003204 Uniprot:E1BT66
Length = 443
Score = 119 (46.9 bits), Expect = 0.00049, P = 0.00049
Identities = 70/232 (30%), Positives = 89/232 (38%)
Query: 248 SENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAA 307
S++ + G+ GQ +Y YG G T G G G + S+Y QS
Sbjct: 3 SDSGSYGQSGGQQSYSS-YG---NQGNQSYGQTQGYSGYGQSGDNSSYG--QSYGNYHGN 56
Query: 308 YDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGP--GYDAQKGSNYD 365
Y GY GYD SYD SY+ KG G S+YD
Sbjct: 57 YG-QNQTGY-GQDSHGYDDES--SYDNQNQSSYNQQSYSNQGQQKGSSRGGRGSYSSSYD 112
Query: 366 AQRGPNYDIHRGPSYDPQRGLG----YDMQRGPNYDMQRGPGYETQRVPGYDVQRGPV-Y 420
Q G Y H+G SYD Q G G YD + G N Q G+ Q Y Q+G +
Sbjct: 113 QQSG--YG-HQG-SYDQQSGYGHQSSYDQKSGYNQH-QSSYGHSQQ---SYQSQKGSYSH 164
Query: 421 EAQ---RAPSYIPQRGPGYDLQRGQGYDMRRAPSYD-PSRG--TGFDGAPRG 466
+Q R S + GY +G G R YD RG +G+ G RG
Sbjct: 165 NSQDDRREKSRYGEDNRGYGGSQGGG----RG-GYDMDGRGHMSGYSGGDRG 211
>UNIPROTKB|F1RIA5 [details] [associations]
symbol:VPS37C "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009851
Pfam:PF07200 PROSITE:PS51314 KO:K12185 GeneTree:ENSGT00530000063123
OMA:VERCQEQ EMBL:CU914270 RefSeq:XP_003122720.1
Ensembl:ENSSSCT00000032280 GeneID:100511491 KEGG:ssc:100511491
Uniprot:F1RIA5
Length = 358
Score = 91 (37.1 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 38/117 (32%), Positives = 48/117 (41%)
Query: 273 GPP-PSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDI-PRGPGYEASKGPGYDA--SK 328
GPP PSA GP S + Q TP R Y + P G + GPGY +
Sbjct: 251 GPPYPSAQP------GPRASAGYSWSPQRSTPPRPGYPVAPTG-----ASGPGYPVVGGR 299
Query: 329 APSYD-PTKGPSYDPAKGPGYDPTKG--PGYDAQKGSNYDAQRGPNYDIH--RGPSY 380
APS P + P P P Y PT+ PG+ Q Y P Y +GP++
Sbjct: 300 APSPGYPQQPPYLSPGGKPPY-PTQPQPPGFAGQPQPPYPPGPAPPYGFPPPQGPTW 355
Score = 89 (36.4 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 53/188 (28%), Positives = 64/188 (34%)
Query: 311 PRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGP 370
PR P +A+ D P P PS P Y P+ PG ++ Q P
Sbjct: 179 PR-PSPQATPPVAEDRQPPPPLPPPPQPSVVPPYPLPYSPS--PGMSVGPTAHGALQPAP 235
Query: 371 NYDIHRGPSYDPQRGLG--Y-DMQRGPNYDM--QRGPGYETQRVPGYDVQ----RGPVYE 421
+ + PS+ LG Y Q GP P T PGY V GP Y
Sbjct: 236 -FPVVSQPSFSYSGPLGPPYPSAQPGPRASAGYSWSPQRSTPPRPGYPVAPTGASGPGYP 294
Query: 422 AQ--RAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNN 479
RAPS PGY Q + P + GF G P+ P G PP
Sbjct: 295 VVGGRAPS------PGYPQQPPYLSPGGKPPYPTQPQPPGFAGQPQPPYPPGPAPPYGFP 348
Query: 480 VPYGSATP 487
P G P
Sbjct: 349 PPQGPTWP 356
Score = 70 (29.7 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 31/143 (21%), Positives = 65/143 (45%)
Query: 44 MMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSE 103
M PE ++ ++A + E+Q L E + AT+ +L + Q L+I + S+
Sbjct: 15 MQNDPEAID-RLAQESPEVQDLQLEREMALATNRSLAERNLEFQGPLEISRSNL----SD 69
Query: 104 RELQMRNLTEKIAKMEAEL-KTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR 162
+ ++R L E+ + +A+L K + ++L + + + + EE A + +
Sbjct: 70 KYQELRKLVERCQEQKAKLEKFSSALQLGTLLDLLQIEGMKI-EEESEAMAEKFLEGEVP 128
Query: 163 AHTDVQQIPAL--LSELESLRQE 183
T ++ ++ LS L +R E
Sbjct: 129 LETFLETFSSMRMLSHLRRVRVE 151
>UNIPROTKB|P02453 [details] [associations]
symbol:COL1A1 "Collagen alpha-1(I) chain" species:9913 "Bos
taurus" [GO:0090263 "positive regulation of canonical Wnt receptor
signaling pathway" evidence=IEA] [GO:0071260 "cellular response to
mechanical stimulus" evidence=IEA] [GO:0071230 "cellular response
to amino acid stimulus" evidence=IEA] [GO:0070208 "protein
heterotrimerization" evidence=IEA] [GO:0060351 "cartilage
development involved in endochondral bone morphogenesis"
evidence=IEA] [GO:0060346 "bone trabecula formation" evidence=IEA]
[GO:0060325 "face morphogenesis" evidence=IEA] [GO:0048706
"embryonic skeletal system development" evidence=IEA] [GO:0048407
"platelet-derived growth factor binding" evidence=IEA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043589 "skin morphogenesis" evidence=IEA] [GO:0042802
"identical protein binding" evidence=IEA] [GO:0034505 "tooth
mineralization" evidence=IEA] [GO:0034504 "protein localization to
nucleus" evidence=IEA] [GO:0032964 "collagen biosynthetic process"
evidence=IEA] [GO:0030335 "positive regulation of cell migration"
evidence=IEA] [GO:0030199 "collagen fibril organization"
evidence=IEA] [GO:0015031 "protein transport" evidence=IEA]
[GO:0010812 "negative regulation of cell-substrate adhesion"
evidence=IEA] [GO:0010718 "positive regulation of epithelial to
mesenchymal transition" evidence=IEA] [GO:0007605 "sensory
perception of sound" evidence=IEA] [GO:0007601 "visual perception"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005615
"extracellular space" evidence=IEA] [GO:0005584 "collagen type I"
evidence=IEA] [GO:0005201 "extracellular matrix structural
constituent" evidence=IEA] [GO:0001958 "endochondral ossification"
evidence=IEA] [GO:0001957 "intramembranous ossification"
evidence=IEA] [GO:0001649 "osteoblast differentiation"
evidence=IEA] [GO:0001568 "blood vessel development" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000885
InterPro:IPR001007 Pfam:PF00093 Pfam:PF01410 ProDom:PD002078
PROSITE:PS01208 PROSITE:PS50184 PROSITE:PS51461 SMART:SM00038
SMART:SM00214 GO:GO:0005737 GO:GO:0045893 GO:GO:0005615
GO:GO:0046872 GO:GO:0015031 GO:GO:0007601 GO:GO:0030199
GO:GO:0007605 GO:GO:0010718 GO:GO:0030335 GO:GO:0070208
InterPro:IPR008160 Pfam:PF01391 eggNOG:NOG12793 GO:GO:0071260
GO:GO:0001568 GO:GO:0001649 GO:GO:0034505 GO:GO:0090263
GO:GO:0010812 GO:GO:0060325 GO:GO:0032964 GO:GO:0071230
GO:GO:0048706 GO:GO:0001957 GO:GO:0034504 GO:GO:0001958
GO:GO:0060351 GO:GO:0005201 GO:GO:0043589 EMBL:BC105184
IPI:IPI00707857 PIR:A91193 RefSeq:NP_001029211.1 UniGene:Bt.23316
IntAct:P02453 STRING:P02453 PRIDE:P02453 Ensembl:ENSBTAT00000017420
GeneID:282187 KEGG:bta:282187 CTD:1277 GeneTree:ENSGT00660000095287
HOGENOM:HOG000085654 HOVERGEN:HBG004933 InParanoid:P02453 KO:K06236
OMA:VAYMDQQ OrthoDB:EOG4S4PHP NextBio:20806015 PMAP-CutDB:P02453
ArrayExpress:P02453 GO:GO:0005584 GO:GO:0060346 Uniprot:P02453
Length = 1463
Score = 125 (49.1 bits), Expect = 0.00051, P = 0.00051
Identities = 83/280 (29%), Positives = 109/280 (38%)
Query: 236 AADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAY 295
A + GA G ++ E G P G E GV GPP A AG G P
Sbjct: 339 AGPPGFPGAVG-AKGE--GGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAG-NPGADGQPG 394
Query: 296 AATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDP-TKGPSYDPAKGPGYDPTKGP 354
A +G P I PG+ ++GP + PS P KG S +P PG +KG
Sbjct: 395 AKGANGAP-----GIAGAPGFPGARGPS--GPQGPSGPPGPKGNSGEPG-APG---SKGD 443
Query: 355 -GYDAQKG-SNYDAQRGP-NYDIHRGPSYDP-QRGL-GYDMQRGPNYDMQRGPGYETQRV 409
G + G + GP + RG +P GL G +RG GPG ++
Sbjct: 444 TGAKGEPGPTGIQGPPGPAGEEGKRGARGEPGPAGLPGPPGERG-------GPG--SRGF 494
Query: 410 PGYDVQRGPVYEA-QR-APSYI-PQRGPGYDLQRGQGYDMRRAPSYDPSRGT-GFDGAPR 465
PG D GP A +R AP P+ PG + G+ + A S G+ G DG
Sbjct: 495 PGADGVAGPKGPAGERGAPGPAGPKGSPGEAGRPGEA-GLPGAKGLTGSPGSPGPDGKTG 553
Query: 466 GAAPHGQVPPPLNNVPYGSATPPARSGSGQPRG--GNPAR 503
P GQ P P G+ G P+G G P +
Sbjct: 554 PPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGK 593
Score = 125 (49.1 bits), Expect = 0.00051, P = 0.00051
Identities = 90/286 (31%), Positives = 109/286 (38%)
Query: 237 ADGSYG--GATGNSENETSGRPVGQNAYEDGYGVPQGH-GPPPSATTAGVVGAGPNTSTS 293
ADG G G G++ + P G A G P G+ G P G AGP +T
Sbjct: 818 ADGQPGAKGEPGDAGAKGDAGPPGP-AGPAGPPGPIGNVGAPGPKGARG--SAGPPGATG 874
Query: 294 -AYAATQSGTPMRAAYDIPRGP----GYEASKGPGYDASKA--PSYDPTKGPSYDPA--K 344
AA + G P + P GP G E SKGP + A P GP PA K
Sbjct: 875 FPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGPP-GPAGEK 933
Query: 345 G-PGYD-P-----TKGP-GYDAQKGS-NYDAQRGPN-YDIHRGPSYDP-QRG-LGYDMQR 392
G PG D P T GP G Q+G QRG + GPS +P ++G G +R
Sbjct: 934 GAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGER 993
Query: 393 GPNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSY 452
GP M GP PG GP E+ R + + PG D G D
Sbjct: 994 GPPGPM--GP-------PGL---AGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPA 1041
Query: 453 DPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRG 498
P G GAP P G+ P G A P G+ P G
Sbjct: 1042 GPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPIGPVGARGPAG 1087
>UNIPROTKB|P02461 [details] [associations]
symbol:COL3A1 "Collagen alpha-1(III) chain" species:9606
"Homo sapiens" [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0001501 "skeletal system development" evidence=IEA] [GO:0001568
"blood vessel development" evidence=IEA] [GO:0046332 "SMAD binding"
evidence=IEA] [GO:0048565 "digestive tract development"
evidence=IEA] [GO:0071230 "cellular response to amino acid
stimulus" evidence=IEA] [GO:0031012 "extracellular matrix"
evidence=IMP;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0007160 "cell-matrix adhesion" evidence=IDA] [GO:0018149
"peptide cross-linking" evidence=IDA] [GO:0050777 "negative
regulation of immune response" evidence=IMP] [GO:0005178 "integrin
binding" evidence=NAS;IMP] [GO:0030168 "platelet activation"
evidence=NAS] [GO:0007179 "transforming growth factor beta receptor
signaling pathway" evidence=IDA] [GO:0034097 "response to cytokine
stimulus" evidence=IDA] [GO:0009314 "response to radiation"
evidence=IDA] [GO:0042060 "wound healing" evidence=IDA;NAS]
[GO:0043206 "extracellular fibril organization" evidence=IMP]
[GO:0030199 "collagen fibril organization" evidence=NAS;IMP]
[GO:0007507 "heart development" evidence=IMP] [GO:0032964 "collagen
biosynthetic process" evidence=IMP;TAS] [GO:0005615 "extracellular
space" evidence=IDA;NAS] [GO:0043588 "skin development"
evidence=IMP] [GO:0005201 "extracellular matrix structural
constituent" evidence=IMP] [GO:0007229 "integrin-mediated signaling
pathway" evidence=IMP] [GO:0005586 "collagen type III"
evidence=NAS;IMP] [GO:0048407 "platelet-derived growth factor
binding" evidence=IDA] [GO:0005576 "extracellular region"
evidence=TAS] [GO:0005788 "endoplasmic reticulum lumen"
evidence=TAS] [GO:0007411 "axon guidance" evidence=TAS] [GO:0030198
"extracellular matrix organization" evidence=TAS]
InterPro:IPR000885 InterPro:IPR001007 Pfam:PF00093 Pfam:PF01410
ProDom:PD002078 PROSITE:PS01208 PROSITE:PS50184 PROSITE:PS51461
SMART:SM00038 SMART:SM00214 Reactome:REACT_118779
Reactome:REACT_111045 Reactome:REACT_111102 GO:GO:0007411
GO:GO:0043588 GO:GO:0005615 GO:GO:0030168 GO:GO:0007507
GO:GO:0046872 GO:GO:0034097 GO:GO:0030199 GO:GO:0005788
GO:GO:0001501 EMBL:CH471058 GO:GO:0005178 GO:GO:0007179
GO:GO:0007229 GO:GO:0007160
Pathway_Interaction_DB:endothelinpathway InterPro:IPR008160
Pfam:PF01391 eggNOG:NOG12793 GO:GO:0001568 GO:GO:0048565
GO:GO:0050777 GO:GO:0009314 GO:GO:0018149 GO:GO:0032964
GO:GO:0071230 GO:GO:0043206 GO:GO:0005201 HOVERGEN:HBG004933
KO:K06236 DrugBank:DB00048 DrugBank:DB00039 GO:GO:0048407
OrthoDB:EOG4FTW1C EMBL:X14420 EMBL:AY054301 EMBL:AY016295
EMBL:AC066694 EMBL:BC028178 EMBL:M26939 EMBL:X07240 EMBL:X15332
EMBL:S62925 EMBL:S79877 EMBL:M59312 EMBL:M59227 EMBL:M55603
EMBL:X06700 EMBL:X01655 EMBL:X01742 EMBL:M13146 EMBL:M11134
IPI:IPI00021033 IPI:IPI00167087 PIR:S05272 RefSeq:NP_000081.1
UniGene:Hs.443625 PDB:2V53 PDB:3DMW PDB:4AE2 PDB:4AEJ PDB:4AK3
PDBsum:2V53 PDBsum:3DMW PDBsum:4AE2 PDBsum:4AEJ PDBsum:4AK3
ProteinModelPortal:P02461 SMR:P02461 DIP:DIP-57177N IntAct:P02461
STRING:P02461 PhosphoSite:P02461 DMDM:124056490 PaxDb:P02461
PRIDE:P02461 Ensembl:ENST00000304636 GeneID:1281 KEGG:hsa:1281
UCSC:uc002uqj.1 CTD:1281 GeneCards:GC02P189803 HGNC:HGNC:2201
HPA:CAB016766 HPA:HPA007583 MIM:100070 MIM:120180 MIM:130020
MIM:130050 neXtProt:NX_P02461 Orphanet:2500 Orphanet:285
Orphanet:286 Orphanet:86 PharmGKB:PA26716 InParanoid:P02461
OMA:EGSPGHP PhylomeDB:P02461 ChiTaRS:COL3A1
EvolutionaryTrace:P02461 GenomeRNAi:1281 NextBio:5177
ArrayExpress:P02461 Bgee:P02461 Genevestigator:P02461
GermOnline:ENSG00000168542 GO:GO:0005586 Uniprot:P02461
Length = 1466
Score = 125 (49.1 bits), Expect = 0.00051, P = 0.00051
Identities = 82/286 (28%), Positives = 103/286 (36%)
Query: 231 NVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGA-GP- 288
+V A G G G + P G + + G P GPP AG G GP
Sbjct: 159 DVKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPP 218
Query: 289 ---NTSTSAYAATQSGTPMRAAY-DIPRGPGYEASKG-PGYDASKAP-SYDPTKGPSYDP 342
S A +SG P R +P PG + G PG+ K +D G +
Sbjct: 219 GAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGET 278
Query: 343 AKGPGYDPTKG-PGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGL-GYDMQRGPNYDMQR 400
PG G PG + G RG + R P G G D RG D Q
Sbjct: 279 G-APGLKGENGLPGENGAPGPM--GPRGAPGERGR-PGLPGAAGARGNDGARGS--DGQP 332
Query: 401 GP-GYE-TQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGT 458
GP G T PG +G V A S PG QRG+ A + P
Sbjct: 333 GPPGPPGTAGFPGSPGAKGEVGPAGSPGS---NGAPG---QRGEPGPQGHAGAQGPPGPP 386
Query: 459 GFDGAPRGAAPHGQVPPPLNNVP--YGSATPPARSGS-GQP--RGG 499
G +G+P G G P + P G+ PP +G+ G P RGG
Sbjct: 387 GINGSPGGKGEMG--PAGIPGAPGLMGARGPPGPAGANGAPGLRGG 430
>UNIPROTKB|O43186 [details] [associations]
symbol:CRX "Cone-rod homeobox protein" species:9606 "Homo
sapiens" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0007601 "visual perception" evidence=IEA] [GO:0050896 "response
to stimulus" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0060041 "retina development in camera-type eye"
evidence=IEA] [GO:0043522 "leucine zipper domain binding"
evidence=IPI] [GO:0009887 "organ morphogenesis" evidence=TAS]
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR013851
InterPro:IPR017970 Pfam:PF00046 Pfam:PF03529 PROSITE:PS00027
PROSITE:PS50071 SMART:SM00389 GO:GO:0007601 GO:GO:0043565
GO:GO:0045944 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
Orphanet:1872 Orphanet:791 GO:GO:0050896 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0005667 GO:GO:0009887 GO:GO:0060041
Orphanet:65 MIM:268000 CTD:1406 eggNOG:NOG324074
HOGENOM:HOG000082677 HOVERGEN:HBG004028 KO:K09337 OMA:QTKARPA
OrthoDB:EOG4NKBWG EMBL:AF024711 EMBL:BT007364 EMBL:AC008745
EMBL:BC016664 EMBL:BC053672 IPI:IPI00011226 RefSeq:NP_000545.1
UniGene:Hs.617342 UniGene:Hs.633434 UniGene:Hs.639114
ProteinModelPortal:O43186 SMR:O43186 IntAct:O43186
MINT:MINT-1442706 STRING:O43186 PhosphoSite:O43186 PRIDE:O43186
DNASU:1406 Ensembl:ENST00000221996 Ensembl:ENST00000539067
Ensembl:ENST00000556900 Ensembl:ENST00000557738 GeneID:1406
KEGG:hsa:1406 UCSC:uc002phq.4 GeneCards:GC19P048327 HGNC:HGNC:2383
HPA:HPA036762 HPA:HPA036763 MIM:120970 MIM:602225 MIM:613829
neXtProt:NX_O43186 PharmGKB:PA26903 InParanoid:O43186
PhylomeDB:O43186 ChiTaRS:CRX GenomeRNAi:1406 NextBio:5749
ArrayExpress:O43186 Bgee:O43186 CleanEx:HS_CRX
Genevestigator:O43186 GermOnline:ENSG00000105392 Uniprot:O43186
Length = 299
Score = 116 (45.9 bits), Expect = 0.00052, P = 0.00052
Identities = 29/98 (29%), Positives = 42/98 (42%)
Query: 269 PQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASK 328
P P P A AG+V +GP+ +++ YA T + P A P G +S G D
Sbjct: 165 PASESPLPEAQRAGLVASGPSLTSAPYAMTYA--PASAFCSSPSAYGSPSSYFSGLDPYL 222
Query: 329 APSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDA 366
+P GP+ P GP P+ + G +Y A
Sbjct: 223 SPMVPQLGGPALSPLSGPSVGPSLAQSPTSLSGQSYGA 260
>FB|FBgn0052685 [details] [associations]
symbol:ZAP3 species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IEA] [GO:0008157 "protein
phosphatase 1 binding" evidence=IPI] [GO:0048812 "neuron projection
morphogenesis" evidence=IMP] InterPro:IPR026314 GO:GO:0005634
EMBL:AE014298 PANTHER:PTHR13413 GeneTree:ENSGT00440000039837
FlyBase:FBgn0052685 RefSeq:NP_727393.1 UniGene:Dm.10734
ProteinModelPortal:Q9W2Y5 SMR:Q9W2Y5 IntAct:Q9W2Y5 MINT:MINT-741898
STRING:Q9W2Y5 EnsemblMetazoa:FBtr0071489 GeneID:31942
KEGG:dme:Dmel_CG32685 UCSC:CG32685-RC InParanoid:Q9W2Y5
PhylomeDB:Q9W2Y5 GenomeRNAi:31942 NextBio:776058
ArrayExpress:Q9W2Y5 Bgee:Q9W2Y5 Uniprot:Q9W2Y5
Length = 1884
Score = 133 (51.9 bits), Expect = 0.00053, Sum P(3) = 0.00053
Identities = 76/276 (27%), Positives = 107/276 (38%)
Query: 247 NSENETSGRPVGQNAYEDGYGVPQGHGPP----PSATTAGVVGAGPNTSTSA----YAAT 298
NS NE + G + + P +GPP P G G+GP + + +
Sbjct: 994 NSGNENKSQDAGDSVSTNNGEKPDNNGPPGGFGPGNGPGGGPGSGPGQNDGSRFDVFGPN 1053
Query: 299 Q-SGTP-MRAAYDIPRG---PGYE-ASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTK 352
Q SG + + P G PG GPG + P++ GP P GP P
Sbjct: 1054 QVSGNNFIDLDNNGPPGFGPPGRNFGPNGPGPRGNFGPNFGHNFGPR-GPG-GPFIRPNG 1111
Query: 353 G-PGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGP-GYETQRVP 410
PG G ++ GPN+ + GP++ P+ G RGP+ GP G P
Sbjct: 1112 PLPGPGPNFGPHF-RPNGPNFGPNFGPNFGPRPGSRNFGPRGPD-----GPFG------P 1159
Query: 411 GYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAP--SYDPSRGTGFDGAPRGAA 468
G D GP + R P P GPG++++ G + P G GF GA
Sbjct: 1160 GRDDFGGPPFGGPR-PHMGPN-GPGHNMRGFNGGPISDNPFRRQGGPPGPGFGNDDLGAG 1217
Query: 469 PHGQVPPPLNNVPYGSATPPARSGSGQPRGGNPARR 504
P + P N +G+ P G G GGN R+
Sbjct: 1218 PP-RGPRNFGN-RFGN---PGGGGGGGGGGGNNNRK 1248
Score = 47 (21.6 bits), Expect = 0.00053, Sum P(3) = 0.00053
Identities = 8/16 (50%), Positives = 8/16 (50%)
Query: 33 PPMPGAFPPFDMMPPP 48
PP P PP PPP
Sbjct: 18 PPQPSVPPPLPDAPPP 33
Score = 40 (19.1 bits), Expect = 0.00053, Sum P(3) = 0.00053
Identities = 14/61 (22%), Positives = 25/61 (40%)
Query: 192 EYEKKFYNDHLESLQVMEKN-YITMATEVEKLRAELMNAPNVDRRAADGSYGGATGNSEN 250
++E++F L + +++ Y E EK R + RR GG+ G S
Sbjct: 601 QWEQQFEEWKLANANHPDRDEYRRYEEEFEKQRRRIAERREQMRRRRQLQMGGSAGGSTT 660
Query: 251 E 251
+
Sbjct: 661 D 661
>UNIPROTKB|F1NI72 [details] [associations]
symbol:COL3A1 "Collagen alpha-1(III) chain" species:9031
"Gallus gallus" [GO:0001568 "blood vessel development"
evidence=IEA] [GO:0005201 "extracellular matrix structural
constituent" evidence=IEA] [GO:0005586 "collagen type III"
evidence=IEA] [GO:0005615 "extracellular space" evidence=IEA]
[GO:0007160 "cell-matrix adhesion" evidence=IEA] [GO:0007179
"transforming growth factor beta receptor signaling pathway"
evidence=IEA] [GO:0007229 "integrin-mediated signaling pathway"
evidence=IEA] [GO:0007507 "heart development" evidence=IEA]
[GO:0009314 "response to radiation" evidence=IEA] [GO:0018149
"peptide cross-linking" evidence=IEA] [GO:0030199 "collagen fibril
organization" evidence=IEA] [GO:0032964 "collagen biosynthetic
process" evidence=IEA] [GO:0034097 "response to cytokine stimulus"
evidence=IEA] [GO:0042060 "wound healing" evidence=IEA] [GO:0043206
"extracellular fibril organization" evidence=IEA] [GO:0043588 "skin
development" evidence=IEA] [GO:0046332 "SMAD binding" evidence=IEA]
[GO:0048407 "platelet-derived growth factor binding" evidence=IEA]
[GO:0048565 "digestive tract development" evidence=IEA] [GO:0050777
"negative regulation of immune response" evidence=IEA] [GO:0071230
"cellular response to amino acid stimulus" evidence=IEA]
InterPro:IPR000885 InterPro:IPR001007 Pfam:PF00093 Pfam:PF01410
ProDom:PD002078 PROSITE:PS01208 PROSITE:PS50184 PROSITE:PS51461
SMART:SM00038 SMART:SM00214 GO:GO:0005615 GO:GO:0034097
GO:GO:0030199 GO:GO:0007179 GO:GO:0007229 GO:GO:0007160
InterPro:IPR008160 Pfam:PF01391 GO:GO:0042060 GO:GO:0050777
GO:GO:0009314 GO:GO:0018149 GO:GO:0071230 GO:GO:0043206
GO:GO:0005201 GeneTree:ENSGT00660000095287 GO:GO:0005586
EMBL:AADN02034558 EMBL:AADN02034559 IPI:IPI00589264
Ensembl:ENSGALT00000004033 OMA:ETCLSAN ArrayExpress:F1NI72
Uniprot:F1NI72
Length = 1498
Score = 125 (49.1 bits), Expect = 0.00053, P = 0.00053
Identities = 78/276 (28%), Positives = 97/276 (35%)
Query: 243 GATGN-SENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSG 301
G G +N G P G G P GPP G G P + + G
Sbjct: 464 GTPGEPGKNGAKGDP-GPKGERGENGTPGAPGPPGEEGKRGANGE-PGQNGVPGTPGERG 521
Query: 302 TPMRAAYDIPRGPGYEASKGP-GYDASKAPSYDPTKGPSYDPAK--GPGYDPTKG-PGYD 357
+P +P G KGP G S P P+ GP+ D + GPG +G PG
Sbjct: 522 SP--GFRGLPGSNGLPGEKGPAGERGSPGPP-GPS-GPAGDRGQDGGPGLPGMRGLPGIP 577
Query: 358 AQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYD--MQRGPGYE-TQRVPGYDV 414
GS D + GP G +P R G GP + PG + + PG +
Sbjct: 578 GSPGS--DGKPGPP-----GNQGEPGRS-GPPGPAGPRGQPGVMGFPGPKGNEGAPGKNG 629
Query: 415 QRGPVYEAQRAPSYIPQRG----PGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPH 470
+RGP P + G PG G D R P PS G G P G P
Sbjct: 630 ERGPG-GPPGTPGPAGKNGDVGLPGPPGPAGPAGD-RGEPG--PSGSPGLQGLPGGPGPA 685
Query: 471 GQVPPPLNNVPYGSATPPARSGSGQPRGGN--PARR 504
G+ P P G P G P+G N P R
Sbjct: 686 GENGKPGEPGPKGDIGGPGFPG---PKGENGIPGER 718
Score = 123 (48.4 bits), Expect = 0.00087, P = 0.00087
Identities = 84/275 (30%), Positives = 104/275 (37%)
Query: 253 SGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPR 312
+G P G G+P G P G+ G P TS + A G P +
Sbjct: 424 AGSP-GNKGEMGPSGIPGAPGLPGGR---GLPGP-PGTSGNPGAKGTPGEPGKNGAKGDP 478
Query: 313 GP-GYEASKG-PGYDASKAPSYDPTKGPSYDPAKG--PGYDPTKG-PGYDAQKGSN-YDA 366
GP G G PG A P + +G + +P + PG +G PG+ GSN
Sbjct: 479 GPKGERGENGTPG--APGPPGEEGKRGANGEPGQNGVPGTPGERGSPGFRGLPGSNGLPG 536
Query: 367 QRGPNYDIHR----GPSYDPQRGLGYDMQRGPNYDMQRG-PGYETQRVPGYDVQRGPVYE 421
++GP + GPS P G D GP RG PG PG D + GP
Sbjct: 537 EKGPAGERGSPGPPGPS-GPAGDRGQD--GGPGLPGMRGLPGIPGS--PGSDGKPGPPGN 591
Query: 422 AQRAPSYIPQRGP-GYDLQRG-QGYDMRR----APSYDPSRGTGFD-GAPRGAAPHGQV- 473
Q P GP G Q G G+ + AP + RG G G P A +G V
Sbjct: 592 -QGEPGRSGPPGPAGPRGQPGVMGFPGPKGNEGAPGKNGERGPGGPPGTPGPAGKNGDVG 650
Query: 474 -P-PPLNNVPYGSATPPARSGS----GQPRGGNPA 502
P PP P G P SGS G P G PA
Sbjct: 651 LPGPPGPAGPAGDRGEPGPSGSPGLQGLPGGPGPA 685
Score = 123 (48.4 bits), Expect = 0.00087, P = 0.00087
Identities = 87/288 (30%), Positives = 109/288 (37%)
Query: 237 ADGSYG--GATG-NSENETSGRPVGQNAY-EDGY-GVPQGHGPPPSATTAGVVGAGPNTS 291
A+GS G G G E G P G A+ +DG G GPP TAG G+ P
Sbjct: 327 ANGSPGQPGPRGPTGERGRPGNPGGPGAHGKDGAPGAAGPPGPPGPPGTAGFPGS-PGFK 385
Query: 292 TSAYA---ATQSGTPMRAAYDIPRGP-GYEASKGPGYDASKAPSYDPTKGPSYDPAKGPG 347
A A SG+P P+G G +GP A +P GPS P PG
Sbjct: 386 GEAGPPGPAGASGSPGERGEPGPQGQAGPPGPQGPPGRAG-SPGNKGEMGPSGIPG-APG 443
Query: 348 YDPTKG-PGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYET 406
+G PG G N A+ P G DP G +RG N PG
Sbjct: 444 LPGGRGLPGPPGTSG-NPGAKGTPGEPGKNGAKGDP----GPKGERGEN-GTPGAPG--- 494
Query: 407 QRVPGYDVQRGPVYEAQR--APSYIPQRG-PGY-DLQRGQGYDMRRAPSYDPSRGTGFDG 462
PG + +RG E + P +RG PG+ L G + P+ + RG+
Sbjct: 495 --PPGEEGKRGANGEPGQNGVPGTPGERGSPGFRGLPGSNGLPGEKGPAGE--RGSPGPP 550
Query: 463 APRG-AAPHGQV--P--PPLNNVPYGSATPPARSGSGQPRG--GNPAR 503
P G A GQ P P + +P G P G P G G P R
Sbjct: 551 GPSGPAGDRGQDGGPGLPGMRGLP-GIPGSPGSDGKPGPPGNQGEPGR 597
>UNIPROTKB|E2QSE6 [details] [associations]
symbol:TPR "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006606 "protein import into nucleus"
evidence=IEA] [GO:0006434 "seryl-tRNA aminoacylation" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005643 "nuclear pore"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004828
"serine-tRNA ligase activity" evidence=IEA] InterPro:IPR012929
InterPro:IPR015866 Pfam:PF07926 GO:GO:0005524 GO:GO:0005737
GO:GO:0005643 GO:GO:0006606 InterPro:IPR009053 SUPFAM:SSF46579
GO:GO:0004828 GO:GO:0006434 Gene3D:1.10.287.40
Ensembl:ENSCAFT00000021777 Uniprot:E2QSE6
Length = 2366
Score = 127 (49.8 bits), Expect = 0.00053, P = 0.00053
Identities = 42/187 (22%), Positives = 88/187 (47%)
Query: 48 PEVME-QKIASQ---HVE-MQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS 102
P+ E +K+ S+ H + +Q+L E RL A L Q+ +Q L + +++
Sbjct: 1351 PDTEEYRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRT 1410
Query: 103 ERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR 162
E+E ++L KI ++ ++KT VK ++ KT+ + L +++++ Q + D Q
Sbjct: 1411 EKETIQKDLDAKIIDIQEKVKTITQVKKIGRRYKTQYEELKAQQDKVMETSAQSSGDHQE 1470
Query: 163 AHTDVQQIPALLSELESLRQEYHHCRGTYE-YEKKFYNDHLESLQVMEKNYITMATEVEK 221
H VQ++ L L + E +KK ++ + +++ + + E+ +
Sbjct: 1471 QHVSVQEMQELKETLNQAETKAKSLESQVENLQKKTLSEKEAEARNLQEQTVQLQCELSR 1530
Query: 222 LRAELMN 228
LR +L +
Sbjct: 1531 LRQDLQD 1537
>ZFIN|ZDB-GENE-030131-4487 [details] [associations]
symbol:sec24c "SEC24 family, member C (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0030127 "COPII vesicle
coat" evidence=IEA] [GO:0006886 "intracellular protein transport"
evidence=IEA] [GO:0006888 "ER to Golgi vesicle-mediated transport"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006810 "transport" evidence=IEA] [GO:0015031 "protein
transport" evidence=IEA] InterPro:IPR006895 InterPro:IPR006896
InterPro:IPR006900 Pfam:PF04810 Pfam:PF04811 Pfam:PF04815
ZFIN:ZDB-GENE-030131-4487 GO:GO:0006886 GO:GO:0008270
InterPro:IPR007123 Pfam:PF00626 GO:GO:0006888 GO:GO:0030127
SUPFAM:SSF82919 InterPro:IPR012990 Pfam:PF08033 SUPFAM:SSF81811
GeneTree:ENSGT00590000082962 EMBL:CU469520 EMBL:CU694198
IPI:IPI00972073 Ensembl:ENSDART00000085476 ArrayExpress:F1R9P2
Bgee:F1R9P2 Uniprot:F1R9P2
Length = 1241
Score = 124 (48.7 bits), Expect = 0.00054, P = 0.00054
Identities = 82/291 (28%), Positives = 110/291 (37%)
Query: 242 GGATGNSENETSGRPV--GQNAYED-GYGVPQGHGPPPS-ATTAGVVGAGPNTSTSAYAA 297
G G E TSG P G +Y G G Q +GPPP A G + + P+T + +
Sbjct: 70 GPPQGMREPPTSGTPPVSGAQSYSQFGQGETQ-NGPPPMVAPPQGTLVSQPHTPNAVSLS 128
Query: 298 TQSGTPMRAAYDIPR-GPGYEASKGPGYDA-SKAPSYDPTKGPSYDP---AKGP---GYD 349
+ P + P G ++ S APS P GP Y P A+ P Y
Sbjct: 129 GPTQPPYGQQFGSPPIGMQQMTNQMASMQVGSTAPS--PA-GPGYAPPSTAQAPISAAYT 185
Query: 350 PTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRG-PNYDM---QRGPGYE 405
P+ P + S+ +Q P + + P P G Q+ PN GP +
Sbjct: 186 PSAPPTFPPT--SSAPSQPPPTEAVAQAPP-QPYYGAPPPAQQPFPNAVSTFSSAGPT-Q 241
Query: 406 TQRVPGYDVQRGPVYEAQRAPSY--IPQRGP----GYDLQRGQGYDMRRAPSYDPSRGTG 459
Q P Q P A P + P GP G L Q +RAP G
Sbjct: 242 PQAPPSVSQQSFPQAPAVSQPPFSTAPPPGPSQSYGGPLPPTQP-SFQRAPLPTSQPGV- 299
Query: 460 FDGAPRGAAPHGQVP------PPLNNV-PYGSATPPARSGSGQPRGGNPAR 503
F G P + H Q+P PP++ PY S PP + S P+ G P R
Sbjct: 300 FPGGPPPTSTHSQLPGPMPPQPPVSQPSPYYSEPPPT-TASFPPQVGAPPR 349
>UNIPROTKB|P15941 [details] [associations]
symbol:MUC1 "Mucin-1" species:9606 "Homo sapiens"
[GO:0005576 "extracellular region" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IBA] [GO:0009986 "cell surface" evidence=IBA]
[GO:0016324 "apical plasma membrane" evidence=IBA] [GO:0005887
"integral to plasma membrane" evidence=TAS] [GO:0005796 "Golgi
lumen" evidence=TAS] [GO:0016266 "O-glycan processing"
evidence=TAS] [GO:0043687 "post-translational protein modification"
evidence=TAS] [GO:0044267 "cellular protein metabolic process"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0002039 "p53 binding" evidence=IPI] [GO:0006977 "DNA damage
response, signal transduction by p53 class mediator resulting in
cell cycle arrest" evidence=IDA] [GO:0000790 "nuclear chromatin"
evidence=IDA] [GO:0090240 "positive regulation of histone H4
acetylation" evidence=IDA] [GO:0000978 "RNA polymerase II core
promoter proximal region sequence-specific DNA binding"
evidence=IDA] [GO:0043618 "regulation of transcription from RNA
polymerase II promoter in response to stress" evidence=IDA]
[GO:0006978 "DNA damage response, signal transduction by p53 class
mediator resulting in transcription of p21 class mediator"
evidence=IDA] [GO:0010944 "negative regulation of transcription by
competitive promoter binding" evidence=IDA] [GO:0003712
"transcription cofactor activity" evidence=IDA] [GO:0036003
"positive regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IDA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IDA] Reactome:REACT_17015
PANTHER:PTHR10006 GO:GO:0043066 GO:GO:0005576 GO:GO:0009986
GO:GO:0005887 GO:GO:0006977 GO:GO:0016324 GO:GO:0000978
GO:GO:0000790 GO:GO:0003712 GO:GO:0043687 InterPro:IPR000082
Pfam:PF01390 SMART:SM00200 PROSITE:PS50024 GO:GO:0005796
EMBL:CH471121 GO:GO:0010944 GO:GO:0090240 PDB:2FO4 PDBsum:2FO4
GO:GO:0016266 GO:GO:0006978 EMBL:AL713999 GO:GO:0036003
MEROPS:S71.001 CTD:4582 eggNOG:NOG77744 KO:K06568
InterPro:IPR023217 EMBL:J05582 EMBL:M32738 EMBL:M32739 EMBL:M34089
EMBL:M34088 EMBL:J05581 EMBL:M61170 EMBL:X52229 EMBL:X52228
EMBL:M35093 EMBL:X80761 EMBL:U60259 EMBL:U60260 EMBL:U60261
EMBL:AF125525 EMBL:AF348143 EMBL:AY327582 EMBL:AY463543
EMBL:BC120974 EMBL:Z17324 EMBL:Z17325 EMBL:M31823 EMBL:S81781
EMBL:S81736 EMBL:M21868 IPI:IPI00013955 IPI:IPI00218163
IPI:IPI00218164 IPI:IPI00218165 IPI:IPI00218166 IPI:IPI00218168
IPI:IPI00218169 IPI:IPI00607673 IPI:IPI00902840 IPI:IPI00978078
PIR:A35175 RefSeq:NP_001018016.1 RefSeq:NP_001018017.1
RefSeq:NP_001037855.1 RefSeq:NP_001037856.1 RefSeq:NP_001037857.1
RefSeq:NP_001037858.1 RefSeq:NP_001191214.1 RefSeq:NP_001191215.1
RefSeq:NP_001191216.1 RefSeq:NP_001191217.1 RefSeq:NP_001191218.1
RefSeq:NP_001191219.1 RefSeq:NP_001191220.1 RefSeq:NP_001191221.1
RefSeq:NP_001191222.1 RefSeq:NP_001191223.1 RefSeq:NP_001191224.1
RefSeq:NP_001191225.1 RefSeq:NP_001191226.1 RefSeq:NP_002447.4
UniGene:Hs.89603 PDB:2ACM PDBsum:2ACM ProteinModelPortal:P15941
SMR:P15941 IntAct:P15941 MINT:MINT-156679 STRING:P15941
GlycoSuiteDB:P15941 PhosphoSite:P15941 DMDM:296439295 PaxDb:P15941
PRIDE:P15941 DNASU:4582 Ensembl:ENST00000337604
Ensembl:ENST00000343256 Ensembl:ENST00000368389
Ensembl:ENST00000368390 Ensembl:ENST00000368398 GeneID:4582
KEGG:hsa:4582 UCSC:uc001fib.3 GeneCards:GC01M155158 HGNC:HGNC:7508
HPA:CAB000036 HPA:CAB001986 HPA:HPA004179 HPA:HPA007235
HPA:HPA008855 MIM:113720 MIM:158340 neXtProt:NX_P15941
PharmGKB:PA31309 ChiTaRS:MUC1 EvolutionaryTrace:P15941
GenomeRNAi:4582 NextBio:17597 Bgee:P15941 Genevestigator:P15941
GermOnline:ENSG00000185499 Uniprot:P15941
Length = 1255
Score = 124 (48.7 bits), Expect = 0.00055, P = 0.00055
Identities = 65/275 (23%), Positives = 91/275 (33%)
Query: 237 ADGSYGGATGNSENETSGRPVG--QNAYEDGYGVPQGHGPPP-SATTAGV-VGAGPNTST 292
A + GG S + S P +NA V H P S+TT G V P T
Sbjct: 27 ASSTPGGEKETSATQRSSVPSSTEKNAVSMTSSVLSSHSPGSGSSTTQGQDVTLAPATEP 86
Query: 293 SAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTK 352
++ +A G + + + R P ++ P +D + AP P G + PA G P
Sbjct: 87 ASGSAATWGQDVTSV-PVTR-PALGSTTPPAHDVTSAPDNKPAPGSTAPPAHGVTSAPDT 144
Query: 353 GPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGL--GYDMQRGPNYDMQRGPGY----ET 406
P + + P+ G + P G+ D + P G +T
Sbjct: 145 RPAPGSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDT 204
Query: 407 QRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRG--QGYDMRRAPSYDPSRGTGFDGAP 464
+ PG P + AP P G G D R AP G AP
Sbjct: 205 RPAPGSTAP--PAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAP 262
Query: 465 RGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRGG 499
G PP + V T PA + P G
Sbjct: 263 DTRPAPGSTAPPAHGVTSAPDTRPAPGSTAPPAHG 297
>UNIPROTKB|Q9BRQ0 [details] [associations]
symbol:PYGO2 "Pygopus homolog 2" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0001701
"in utero embryonic development" evidence=IEA] [GO:0001822 "kidney
development" evidence=IEA] [GO:0002088 "lens development in
camera-type eye" evidence=IEA] [GO:0007420 "brain development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0030879 "mammary gland development" evidence=IEA]
[GO:0033599 "regulation of mammary gland epithelial cell
proliferation" evidence=IEA] [GO:0042393 "histone binding"
evidence=IEA] [GO:0048589 "developmental growth" evidence=IEA]
[GO:0051569 "regulation of histone H3-K4 methylation" evidence=IEA]
[GO:0060021 "palate development" evidence=IEA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00628 PROSITE:PS50016 SMART:SM00249
GO:GO:0005634 GO:GO:0007420 GO:GO:0046872 GO:GO:0008270
GO:GO:0001701 GO:GO:0009791 GO:GO:0001822 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0048589
InterPro:IPR019786 PROSITE:PS01359 GO:GO:0060021 GO:GO:0060070
GO:GO:0030879 GO:GO:0033599 PDB:2XB1 PDBsum:2XB1 GO:GO:0051569
GO:GO:0002088 eggNOG:NOG72798 HOGENOM:HOG000001580
HOVERGEN:HBG053774 EMBL:AF457208 EMBL:BC006132 EMBL:BC013725
EMBL:BC032099 EMBL:AF289598 IPI:IPI00042099 RefSeq:NP_612157.1
UniGene:Hs.533597 ProteinModelPortal:Q9BRQ0 SMR:Q9BRQ0
IntAct:Q9BRQ0 STRING:Q9BRQ0 PhosphoSite:Q9BRQ0 DMDM:23396825
PaxDb:Q9BRQ0 PRIDE:Q9BRQ0 DNASU:90780 Ensembl:ENST00000368457
GeneID:90780 KEGG:hsa:90780 UCSC:uc001fft.3 CTD:90780
GeneCards:GC01M154929 HGNC:HGNC:30257 HPA:HPA023689 MIM:606903
neXtProt:NX_Q9BRQ0 PharmGKB:PA134881185 InParanoid:Q9BRQ0
OMA:PGLVYPC OrthoDB:EOG4QZ7MB PhylomeDB:Q9BRQ0 GenomeRNAi:90780
NextBio:76956 ArrayExpress:Q9BRQ0 Bgee:Q9BRQ0 CleanEx:HS_PYGO2
Genevestigator:Q9BRQ0 GermOnline:ENSG00000163348 Uniprot:Q9BRQ0
Length = 406
Score = 118 (46.6 bits), Expect = 0.00055, P = 0.00055
Identities = 72/267 (26%), Positives = 101/267 (37%)
Query: 257 VGQNAYEDGYGVPQ-GHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPG 315
V N +ED +G P+ G PP + G Q G A +P PG
Sbjct: 73 VASNPFEDDFGAPKVGVAAPPFLGSPVPFGG---------FRVQGGM----AGQVP--PG 117
Query: 316 YEASKGPGYDASKA--PSYDPTK-GPSYD-PAKGPGYDPTKGPGYDAQKGSNYDAQRGPN 371
Y G G + P + P GP+++ P +GPGY P + +Q ++ G N
Sbjct: 118 YSTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQP---FNQPLGQN 174
Query: 372 YDIHRGPSYD-PQRGLGY----DMQRGPNYDMQRGPGYETQRV--PGYDVQRGPVYE-AQ 423
+ G P G G M + P ++ GP +QR PG P+ Q
Sbjct: 175 FSPPSGQMMPGPVGGFGPMISPTMGQPPRAEL--GPPSLSQRFAQPGAPFGPSPLQRPGQ 232
Query: 424 RAPSYIPQRGP--GYDLQ-RGQGYDMRRAPSYDPSRGTGFDGAPRGAAP----HGQVPP- 475
PS P P G D G G + P +P T F P +P +G P
Sbjct: 233 GLPSLPPNTSPFPGPDPGFPGPGGEDGGKP-LNPPASTAFPQEPHSGSPAAAVNGNQPSF 291
Query: 476 PLNNVPYGSATPPARSGS--GQPRGGN 500
P N+ G TP A S + G+ GG+
Sbjct: 292 PPNSSGRGGGTPDANSLAPPGKAGGGS 318
>WB|WBGene00001076 [details] [associations]
symbol:dpy-17 species:6239 "Caenorhabditis elegans"
[GO:0042302 "structural constituent of cuticle" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0040002 "collagen and
cuticulin-based cuticle development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR002486 Pfam:PF01484 SMART:SM01088
GO:GO:0040007 GO:GO:0002119 GO:GO:0010171 GO:GO:0040035
InterPro:IPR008160 Pfam:PF01391 GO:GO:0040002 EMBL:FO080874
GO:GO:0042302 HOGENOM:HOG000085656 GeneTree:ENSGT00390000012316
RefSeq:NP_498086.1 ProteinModelPortal:Q20778 SMR:Q20778
DIP:DIP-26150N MINT:MINT-1080630 STRING:Q20778 PaxDb:Q20778
EnsemblMetazoa:F54D8.1.1 EnsemblMetazoa:F54D8.1.2 GeneID:175696
KEGG:cel:CELE_F54D8.1 UCSC:F54D8.1.1 CTD:175696 WormBase:F54D8.1
eggNOG:NOG253878 InParanoid:Q20778 OMA:TEMEAWR NextBio:889252
Uniprot:Q20778
Length = 352
Score = 117 (46.2 bits), Expect = 0.00056, P = 0.00056
Identities = 78/305 (25%), Positives = 105/305 (34%)
Query: 215 MATEVEKLRAE----LMNAPNVDR-RAADGSYGGATGNSENETSGRPVGQNAYEDGY-GV 268
+ TE+E R E M+ R R G YGG G SG P G + G+ G
Sbjct: 38 LTTEMEAWRLESDQIYMDMQKFGRVRRQAGGYGGYGGYGSGP-SG-PSGPSGPHGGFPGG 95
Query: 269 PQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASK 328
PQGH P + ++ G + G+P+ GPG + +
Sbjct: 96 PQGHFPGNTGSSNTPTLPGVIGVPPSVTGHPGGSPINPDGSPSAGPGDKCNCNTENSCPA 155
Query: 329 APSYDPTKGPSYDPAKG-PGYDPTKGPGYDAQKGSNYDAQRGPNYD----IHRGPSYDP- 382
P+ P P +D G PG PG D + + AQ YD GP P
Sbjct: 156 GPA-GPKGTPGHDGPDGIPGV-----PGVDGEDADDAKAQT-QQYDGCFTCPAGPQGPPG 208
Query: 383 QRGL-GYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRG 441
+G G RG PG + PG GP+ A P PG D++
Sbjct: 209 SQGKPGARGMRGARGQAAM-PGRDGS--PGMPGSLGPIGPPGAAGEEGPTGEPGADVEHQ 265
Query: 442 QGYD-MRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGS-GQP-RG 498
G + P G + RGA G PP P G +G+ G P
Sbjct: 266 IGLPGAKGTPGAPGESGDQGEQGDRGAT--GIAGPPGERGPQGEKGDDGPNGAAGSPGEE 323
Query: 499 GNPAR 503
G P +
Sbjct: 324 GEPGQ 328
>UNIPROTKB|F1LNH3 [details] [associations]
symbol:Col6a2 "Protein Col6a2" species:10116 "Rattus
norvegicus" [GO:0005615 "extracellular space" evidence=IEA]
[GO:0031012 "extracellular matrix" evidence=IEA] [GO:0042383
"sarcolemma" evidence=IEA] [GO:0043234 "protein complex"
evidence=IEA] [GO:0070208 "protein heterotrimerization"
evidence=IEA] InterPro:IPR002035 Pfam:PF00092 PROSITE:PS50234
SMART:SM00327 RGD:1305585 GO:GO:0005615 GO:GO:0043234 GO:GO:0042383
GO:GO:0070208 InterPro:IPR008160 Pfam:PF01391 GO:GO:0031012
GeneTree:ENSGT00530000063022 OMA:RALCNHD IPI:IPI00372839
Ensembl:ENSRNOT00000001695 ArrayExpress:F1LNH3 Uniprot:F1LNH3
Length = 1025
Score = 123 (48.4 bits), Expect = 0.00056, P = 0.00056
Identities = 88/284 (30%), Positives = 99/284 (34%)
Query: 237 ADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVG-AG-PNTSTSA 294
+DG G +N T G Q G P G P S G G AG P
Sbjct: 320 SDGRKGAPGLAGKNGTDG----QKGKLGRIGPPGCKGDPGSRGPDGYPGEAGSPGEQGDQ 375
Query: 295 YAATQSGTPMRAAYDIPRGPGYEASKGPGYDA-SKAPSYDPTKGPSYDPA----KG-PGY 348
A SG P R P PG + SKG Y S AP KG P KG PG
Sbjct: 376 GAKGDSGRPGRRGP--PGNPGDKGSKG--YRGNSGAPGSPGVKGGKGGPGPRGPKGEPGR 431
Query: 349 --DP-TKG-PGYDAQKGSNYD-AQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPG 403
DP TKG PG D KG D GP S + G RGP + PG
Sbjct: 432 RGDPGTKGGPGSDGPKGEKGDPGPEGPRGLAGEIGSKGAKGDRGLPGPRGPQGALGE-PG 490
Query: 404 YETQRV-PGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRA----PSYDPSRGT 458
+ R PG RG Q P P R PG+ +G + P + RG
Sbjct: 491 KQGSRGDPGDAGPRGD--SGQPGPKGDPGR-PGFSYPGPRGTPGEKGEPGPPGPEGGRGD 547
Query: 459 -GFDGAPRGAAPHGQV--P-PPLNNVPYGSATPPARSGSGQPRG 498
G GAP G+ P PP P G P G P G
Sbjct: 548 FGLKGAPGRKGEKGEPADPGPPGEPGPRGPRGIPGPEGEPGPPG 591
>FB|FBgn0003980 [details] [associations]
symbol:Vm26Ab "Vitelline membrane 26Ab" species:7227
"Drosophila melanogaster" [GO:0007304 "chorion-containing eggshell
formation" evidence=IMP] [GO:0007305 "vitelline membrane formation
involved in chorion-containing eggshell formation" evidence=NAS]
[GO:0008316 "structural constituent of vitelline membrane"
evidence=NAS] [GO:0007343 "egg activation" evidence=IMP]
[GO:0060388 "vitelline envelope" evidence=IDA] GO:GO:0005576
EMBL:AE014134 GO:GO:0007304 GO:GO:0007343 eggNOG:NOG295326
PROSITE:PS51137 GeneTree:ENSGT00540000073505 GO:GO:0060388
InterPro:IPR013135 Pfam:PF10542 EMBL:M20936 EMBL:EF441676
PIR:A45943 RefSeq:NP_476784.1 UniGene:Dm.26740 DIP:DIP-19185N
IntAct:P13238 MINT:MINT-1563965 STRING:P13238
EnsemblMetazoa:FBtr0079171 GeneID:33827 KEGG:dme:Dmel_CG9046
CTD:33827 FlyBase:FBgn0003980 InParanoid:P13238 OMA:RAAYGGY
PhylomeDB:P13238 GenomeRNAi:33827 NextBio:785460 Bgee:P13238
GermOnline:CG9046 Uniprot:P13238
Length = 168
Score = 108 (43.1 bits), Expect = 0.00056, P = 0.00056
Identities = 28/92 (30%), Positives = 35/92 (38%)
Query: 277 SATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTK 336
S G GA P + +Y+A + P AY P P Y A P Y A AP+Y
Sbjct: 45 SRAAYGGYGAAP--AAPSYSAPAA--PAAQAYSAPAAPAYSAPAAPAYSAPAAPAYSAPA 100
Query: 337 GPSYDPAKGPGYD-PTKGPGYDAQKGSNYDAQ 367
P+Y P Y P P K + Q
Sbjct: 101 APAYSAPAAPAYSAPASIPSPPCPKNYLFSCQ 132
>UNIPROTKB|Q749V3 [details] [associations]
symbol:GSU2639 "Uncharacterized protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] EMBL:AE017180
GenomeReviews:AE017180_GR RefSeq:NP_953684.1
ProteinModelPortal:Q749V3 GeneID:2686067 KEGG:gsu:GSU2639
PATRIC:22028131 HOGENOM:HOG000131095 OMA:VAWSLTA
ProtClustDB:CLSK828924 BioCyc:GSUL243231:GH27-2644-MONOMER
Uniprot:Q749V3
Length = 699
Score = 121 (47.7 bits), Expect = 0.00057, P = 0.00057
Identities = 60/234 (25%), Positives = 97/234 (41%)
Query: 34 PMPGAFPPFDMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQIL 93
P P P P E M +K + V+ + L E +R+ A + L +E A L+ L
Sbjct: 154 PEPPRAPSPPSPQPAEPMPKKTPA--VDTKALEAEARRMEAENTALEREGNA---RLEEL 208
Query: 94 HGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKS---KTEAQNLVVAREELI 150
+ +I + ERE R L K +EAE+ E K E ++ +T A + VAR L
Sbjct: 209 NARIAELGREREEIRRALAGKEKSLEAEIAQLERRKAEDEQELAKRTAAHDAEVAR--LK 266
Query: 151 AKVHQLTQDLQRAHT-DVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESL---- 205
A + QL +L R + + ++ L +EL L E + E + D L L
Sbjct: 267 ADIDQLGAELARLGSGESTEVAELTAELSRLTAERERAESSAESAESELRDRLARLSAEW 326
Query: 206 ----QVMEKNYITMATEVEKLRAELMNAPNV-DRRAADGSYGGATGNSENETSG 254
+ E+ T+A ++ ++ E A + R + G E E +G
Sbjct: 327 EEVRKASEERQETLARDIARMAREKEEAERLGSERVRELEQAVRRGEEEREAAG 380
>TIGR_CMR|GSU_2639 [details] [associations]
symbol:GSU_2639 "hypothetical protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] EMBL:AE017180
GenomeReviews:AE017180_GR RefSeq:NP_953684.1
ProteinModelPortal:Q749V3 GeneID:2686067 KEGG:gsu:GSU2639
PATRIC:22028131 HOGENOM:HOG000131095 OMA:VAWSLTA
ProtClustDB:CLSK828924 BioCyc:GSUL243231:GH27-2644-MONOMER
Uniprot:Q749V3
Length = 699
Score = 121 (47.7 bits), Expect = 0.00057, P = 0.00057
Identities = 60/234 (25%), Positives = 97/234 (41%)
Query: 34 PMPGAFPPFDMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQIL 93
P P P P E M +K + V+ + L E +R+ A + L +E A L+ L
Sbjct: 154 PEPPRAPSPPSPQPAEPMPKKTPA--VDTKALEAEARRMEAENTALEREGNA---RLEEL 208
Query: 94 HGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKS---KTEAQNLVVAREELI 150
+ +I + ERE R L K +EAE+ E K E ++ +T A + VAR L
Sbjct: 209 NARIAELGREREEIRRALAGKEKSLEAEIAQLERRKAEDEQELAKRTAAHDAEVAR--LK 266
Query: 151 AKVHQLTQDLQRAHT-DVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESL---- 205
A + QL +L R + + ++ L +EL L E + E + D L L
Sbjct: 267 ADIDQLGAELARLGSGESTEVAELTAELSRLTAERERAESSAESAESELRDRLARLSAEW 326
Query: 206 ----QVMEKNYITMATEVEKLRAELMNAPNV-DRRAADGSYGGATGNSENETSG 254
+ E+ T+A ++ ++ E A + R + G E E +G
Sbjct: 327 EEVRKASEERQETLARDIARMAREKEEAERLGSERVRELEQAVRRGEEEREAAG 380
>UNIPROTKB|I3L781 [details] [associations]
symbol:I3L781 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005581 "collagen" evidence=IEA] [GO:0005201
"extracellular matrix structural constituent" evidence=IEA]
InterPro:IPR000885 Pfam:PF01410 ProDom:PD002078 PROSITE:PS51461
SMART:SM00038 GO:GO:0005581 InterPro:IPR008160 Pfam:PF01391
GO:GO:0005201 GeneTree:ENSGT00660000095287
Ensembl:ENSSSCT00000024528 OMA:EVSMPEI Uniprot:I3L781
Length = 1087
Score = 123 (48.4 bits), Expect = 0.00060, P = 0.00060
Identities = 83/271 (30%), Positives = 99/271 (36%)
Query: 243 GATGNSENETSGRPVGQNAYEDGYGVPQGHGPP-----PS-ATTAGVVGAGPNTSTSAYA 296
GA G N + P G + G G GPP P A TAG VG
Sbjct: 518 GAPGPDGNNGAQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPAGTAGEVGKPGERGIPG-- 575
Query: 297 ATQSGTPMRAAYDIPRGP-GYEASKGP-GYDASKAPSYDPTKGPSYDPAKG-PGYDPTKG 353
+ G P A RGP G + GP G S+ PS P GP D KG PG
Sbjct: 576 --EFGLPGPAGPRGERGPPGESGAAGPAGPIGSRGPSGPP--GP--DGNKGEPGV--LGA 627
Query: 354 PGYDAQKG-SNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRG-PGYETQRVP- 410
PG G S +RG I G + GL D+ P D RG PG P
Sbjct: 628 PGTAGPSGPSGLPGERGAA-GIPGGKGEKGETGLRGDVG-SPGRDGARGAPGAVGAPGPA 685
Query: 411 GYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAP--RGA- 467
G + RG A A P+ PG +RG+ P+ G GA RG
Sbjct: 686 GANGDRGEAGPAGPAGPAGPRGSPG---ERGEVGPAGPNGFAGPAGAAGQPGAKGERGTK 742
Query: 468 APHGQVPPPLNNVPYGSATPPARSGSGQPRG 498
P G+ P P G+A P +G P G
Sbjct: 743 GPKGENGPVGPTGPVGAAGPAGPNGPPGPAG 773
>UNIPROTKB|B0QYK0 [details] [associations]
symbol:EWSR1 "RNA-binding protein EWS" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001876 InterPro:IPR012677
Pfam:PF00641 PROSITE:PS01358 PROSITE:PS50102 PROSITE:PS50199
SMART:SM00360 SMART:SM00547 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622 EMBL:AC002059
EMBL:AL031186 EMBL:AC000026 UniGene:Hs.374477 HGNC:HGNC:3508
HOGENOM:HOG000038010 HOVERGEN:HBG000970 ChiTaRS:EWSR1
IPI:IPI00879242 SMR:B0QYK0 STRING:B0QYK0 Ensembl:ENST00000331029
Uniprot:B0QYK0
Length = 618
Score = 120 (47.3 bits), Expect = 0.00062, P = 0.00062
Identities = 75/279 (26%), Positives = 102/279 (36%)
Query: 239 GSYGGATGNSENETSGRPV-GQNAYEDGYGVPQ-GHGPP--PSATTAGVVGAGP---NTS 291
G+YG T S + GQ AY YG P G+ P P A + V G G +T+
Sbjct: 42 GTYGQPTDVSYTQAQTTATYGQTAYATSYGQPPTGYTTPTAPQAYSQPVQGYGTGAYDTT 101
Query: 292 TSAYAATQSGTPMRAAYDI-PRGPGYEASKGPGYDASKAPS--YDPTKGPSYDPAKGPGY 348
T+ TQ+ ++AY P P Y + P A P PT+ + G GY
Sbjct: 102 TATVTTTQASYAAQSAYGTQPAYPAY--GQQPAATAPTRPQDGNKPTETSQPQSSTG-GY 158
Query: 349 D-PTKGPGYDAQKGSNYDAQRG--PNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYE 405
+ P+ G G Q +Y G P + PSY P Y + +YD
Sbjct: 159 NQPSLGYG---QSNYSYPQVPGSYPMQPVTAPPSYPPT---SYSSTQPTSYDQSSYSQQN 212
Query: 406 TQRVPG-YDVQRG----PVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGF 460
T P Y Q Y Q SY PQ G Y Q Y +++ SY
Sbjct: 213 TYGQPSSYGQQSSYGQQSSYGQQPPTSYPPQTG-SYSQAPSQ-YS-QQSSSYGQQSSFRQ 269
Query: 461 DGAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRGG 499
D P +GQ + P + + G+ RGG
Sbjct: 270 DH-PSSMGVYGQESGGFSG-PGENRSMSGPDNRGRGRGG 306
>UNIPROTKB|D4A458 [details] [associations]
symbol:Ewsr1 "Protein Ewsr1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR012677 Pfam:PF00641 PROSITE:PS01358 PROSITE:PS50102
PROSITE:PS50199 SMART:SM00360 SMART:SM00547 RGD:1307258
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 IPI:IPI00767290 Ensembl:ENSRNOT00000057377
ArrayExpress:D4A458 Uniprot:D4A458
Length = 618
Score = 120 (47.3 bits), Expect = 0.00062, P = 0.00062
Identities = 74/278 (26%), Positives = 100/278 (35%)
Query: 239 GSYGGATGNSENET-SGRPVGQNAYEDGYGVPQ-GHGPP--PSATTAGVVGAGP---NTS 291
G+YG T S + S GQ AY YG P G+ P P A + V G G +T+
Sbjct: 42 GTYGQPTDVSYTQAQSTATXGQTAYATSYGQPPTGYTTPTAPQAYSQPVQGYGTGAYDTT 101
Query: 292 TSAYAATQSGTPMRAAYDI-PRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPG-YD 349
T+ TQ+ ++AY P P Y + P A P + P G Y+
Sbjct: 102 TATVTTTQASYAAQSAYGTQPAYPAY--GQQPAATAPTRPQDGNKPAETSQPQSSTGGYN 159
Query: 350 -PTKGPGYDAQKGSNYDAQRG--PNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYET 406
P+ G G Q +Y G P + PSY P Y + +YD T
Sbjct: 160 QPSLGYG---QSNYSYPQVPGSYPMQPVTAPPSYPPT---SYSSSQPTSYDQSSYSQQNT 213
Query: 407 QRVPG-YDVQRG----PVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFD 461
P Y Q Y Q SY PQ G Y Q Y +++ SY D
Sbjct: 214 YGQPSSYGQQSSYGQQSSYGQQPPTSYPPQTG-SYSQAPSQ-YS-QQSSSYGQQSSFRQD 270
Query: 462 GAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRGG 499
P +GQ + P + + G+ RGG
Sbjct: 271 H-PSSMGVYGQESGGFSG-PGENRSLSGPDNRGRGRGG 306
>MGI|MGI:1346056 [details] [associations]
symbol:Ctage5 "CTAGE family, member 5" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0016020 "membrane" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] MGI:MGI:1346056 GO:GO:0016021
HOVERGEN:HBG051216 eggNOG:NOG133684 HOGENOM:HOG000112043
EMBL:BC024076 EMBL:BC026864 IPI:IPI00153633 UniGene:Mm.244118
UniGene:Mm.438038 ProteinModelPortal:Q8R311 SMR:Q8R311
PhosphoSite:Q8R311 PaxDb:Q8R311 PRIDE:Q8R311 UCSC:uc007nqf.2
InParanoid:Q8R311 ChiTaRS:CTAGE5 CleanEx:MM_CTAGE5
Genevestigator:Q8R311 GermOnline:ENSMUSG00000021000 Uniprot:Q8R311
Length = 779
Score = 121 (47.7 bits), Expect = 0.00065, P = 0.00065
Identities = 99/425 (23%), Positives = 162/425 (38%)
Query: 79 LRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTE 138
++++L L+ + K+E E + + L +K+ K+ EL +KL + T
Sbjct: 324 VKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKL-KVITELYQENEMKLH--RKLTV 380
Query: 139 AQNLVVAREELIAKVHQ-LTQDLQRAHTDVQQIPALLSELESLRQEYHHCRG-TYEYEKK 196
+N + +EE ++KV + ++ + T Q+ L ELE + H +G +EKK
Sbjct: 381 EENYRLEKEEKLSKVDEKISHATEELETCRQRAKDLEEELE---RTIHSYQGQVISHEKK 437
Query: 197 FYNDHLESLQVMEKNYITMATEVEKLRAELMNAP------NVDRRAADGSYGGATGNSEN 250
+++ L + + +E+N + E R +L D A D A G +
Sbjct: 438 AHDNWLAA-RTLERNLNDLRKENAHNRQKLTETEFKFELLEKDPYALDVP-NTAFGREHS 495
Query: 251 ETSGRPVGQNAYED-GYGVPQG--HGP---PPSATTAGVVGA-GPNTSTSAYAATQSG-T 302
P+G+ E + P GP P G G+ GP T+ G +
Sbjct: 496 PYGPSPLGRPPSETRAFLSPPTLLEGPLRLSPLLPGGGGRGSRGPENLLDHQMNTERGES 555
Query: 303 PMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSY-DPA--KGPGYDPTKGPGYDAQ 359
D PR P + S P ++ + + P G Y DPA + + P G
Sbjct: 556 SYDRLSDAPRAPS-DRSLSPPWEQDRRMTAHPPPGQPYSDPALQRQDRFYPNSGRLSGPA 614
Query: 360 KGSNYDAQRGPNYDIHRGP--SYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRG 417
+ +Y+ P+ D GP S G G G N ++ P +P G
Sbjct: 615 ELRSYNM---PSLDKVDGPVPSEMESSGNGTKDNLG-NSNVPDSP------IPAECEAAG 664
Query: 418 PVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVP-PP 476
+ P + P R P + + + MRR PS+ P APR P P PP
Sbjct: 665 RGFFP---PPFPPVRDPLFPVDPRSQF-MRRGPSFPPPPPGSIYAAPRDYFPPRDFPGPP 720
Query: 477 LNNVP 481
L P
Sbjct: 721 LPPFP 725
>UNIPROTKB|B4DR34 [details] [associations]
symbol:SS18 "Protein SSXT" species:9606 "Homo sapiens"
[GO:0000226 "microtubule cytoskeleton organization" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0005881
"cytoplasmic microtubule" evidence=IEA] [GO:0007243 "intracellular
protein kinase cascade" evidence=IEA] [GO:0042493 "response to
drug" evidence=IEA] [GO:0048013 "ephrin receptor signaling pathway"
evidence=IEA] GO:GO:0000226 GO:GO:0042493 GO:GO:0007243
GO:GO:0000902 GO:GO:0048013 GO:GO:0005881 HOVERGEN:HBG003892
InterPro:IPR007726 PANTHER:PTHR23107 UniGene:Hs.129261
EMBL:AC091021 HGNC:HGNC:11340 ChiTaRS:SS18 EMBL:AK299082
IPI:IPI01015658 STRING:B4DR34 Ensembl:ENST00000539849
Uniprot:B4DR34
Length = 336
Score = 116 (45.9 bits), Expect = 0.00066, P = 0.00066
Identities = 66/236 (27%), Positives = 88/236 (37%)
Query: 239 GSYGGATGNSENETSGRPVGQNAYEDGYGVPQG---H--GPPPSATTAGVVGAGPNT--- 290
G+YG S G + Q Y +PQG H G P G V G +
Sbjct: 106 GNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQ 165
Query: 291 -STSAYAATQSGTPMR-AAYDIPRGPGYE-ASKGP--GYDASKAPSYDPTKG---PSYDP 342
Y Q G P + + + G Y +GP G + P G PSY P
Sbjct: 166 RQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQPSY-P 224
Query: 343 AKGPGYD-PTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRG 401
+G YD P + +G N +Q G D ++GP PQ+G Q+ P G
Sbjct: 225 EQG--YDRPYEDSSQHYYEGGN--SQYGQQQDAYQGPP--PQQGYPPQQQQYPGQQGYPG 278
Query: 402 P--GY-ETQRVPGYDVQRGPVYEAQRAPSYIP-QRGPGYD-LQRGQGYDMRRAPSY 452
GY +Q PG P + Q+ Y P Q GP QR GYD + +Y
Sbjct: 279 QQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNY 334
>UNIPROTKB|O18740 [details] [associations]
symbol:KRT9 "Keratin, type I cytoskeletal 9" species:9615
"Canis lupus familiaris" [GO:0045109 "intermediate filament
organization" evidence=ISS] [GO:0043588 "skin development"
evidence=ISS] [GO:0005882 "intermediate filament" evidence=IEA]
[GO:0005198 "structural molecule activity" evidence=IEA]
InterPro:IPR001664 InterPro:IPR002957 PRINTS:PR01248 GO:GO:0043588
GO:GO:0005198 GO:GO:0005882 GO:GO:0045109 HOVERGEN:HBG013015
InterPro:IPR016044 PANTHER:PTHR23239 Pfam:PF00038 PROSITE:PS00226
HSSP:P08670 eggNOG:NOG148410 KO:K07604 EMBL:AF000949
RefSeq:NP_001014307.1 UniGene:Cfa.38225 ProteinModelPortal:O18740
PRIDE:O18740 GeneID:490980 KEGG:cfa:490980 CTD:3857
InParanoid:O18740 OrthoDB:EOG4BCDNC NextBio:20863900 Uniprot:O18740
Length = 786
Score = 121 (47.7 bits), Expect = 0.00066, P = 0.00066
Identities = 95/451 (21%), Positives = 158/451 (35%)
Query: 62 MQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAE 121
+ + E +R++A + R+++ Q+E Q+ + M S +E++ + +++ ++
Sbjct: 307 LNDMREEYERISAKN---RKDIEE-QYETQMSQMEQEVMSSGQEMESNH--KEVTQLRHS 360
Query: 122 LKTAEPVKLEFQKSKTEA--QNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELES 179
++ E ++L+ Q SK A ++L + ++ QL + ++ QI + E+E
Sbjct: 361 IQEME-IELQSQLSKKSALEKSLEDTKNHYCGQLQQLQEQIRSLEG---QITEIRGEIEC 416
Query: 180 LRQEYH---HCRGTYEYEKKFYNDHLES----LQVMEKNYITMATEVEKLRAELMNAPNV 232
QEY + + E E K Y LE + E + + + + +
Sbjct: 417 QNQEYSLLLNIKTRLEQEIKTYRSLLEGGQEDFESHESGQSHFGSGGSRQQGGIGGSHGR 476
Query: 233 DRRAADG-SYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTS 291
R G SYGG + +S + G G + G G G G + G G G +
Sbjct: 477 GSRGGSGGSYGGGS-SSGGGSGGSHGGGSGGSYGGGSSSGGGSGGRGGSGGSYGGGSGSG 535
Query: 292 TSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPT 351
+ + G+ G G S G G + G SY G G
Sbjct: 536 GGSSGSYGGGSSSGGGSGGSHGGGSGGSYGGGSSSGGGSGGRGGSGGSYGGGSGSG---- 591
Query: 352 KGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPG 411
G G ++GS + G +Y G G G G G + G
Sbjct: 592 GGRGGGCEEGSGSGGRSGGSYGGGSGSGGGSSCSYGGGSSSGGGSGGSYGGGSSSGGGSG 651
Query: 412 YDVQRGPVYE--AQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAP 469
G Y + G G RG G A SY G+G G G
Sbjct: 652 GKGGSGCSYSGGSSSGGGSGGSYGGGSSSGRGSGGRGGSAGSYGGGSGSG--GGRGGGCE 709
Query: 470 HGQVPPPLNNVPYGSATPPARSGSGQPRGGN 500
G + YG SGSG GG+
Sbjct: 710 EGSGSGGRSGGSYGGG-----SGSGGRSGGS 735
>MGI|MGI:88462 [details] [associations]
symbol:Col7a1 "collagen, type VII, alpha 1" species:10090 "Mus
musculus" [GO:0004867 "serine-type endopeptidase inhibitor
activity" evidence=IEA] [GO:0005576 "extracellular region"
evidence=IEA] [GO:0005578 "proteinaceous extracellular matrix"
evidence=IEA] [GO:0005581 "collagen" evidence=IEA] [GO:0005604
"basement membrane" evidence=IDA] [GO:0007155 "cell adhesion"
evidence=IEA] [GO:0010466 "negative regulation of peptidase
activity" evidence=IEA] [GO:0030414 "peptidase inhibitor activity"
evidence=IEA] InterPro:IPR002035 InterPro:IPR002223
InterPro:IPR003961 Pfam:PF00014 Pfam:PF00041 Pfam:PF00092
PRINTS:PR00759 PROSITE:PS50234 PROSITE:PS50279 PROSITE:PS50853
SMART:SM00060 SMART:SM00327 MGI:MGI:88462 Gene3D:2.60.40.10
InterPro:IPR013783 GO:GO:0004867 SUPFAM:SSF49265 GO:GO:0007155
Gene3D:4.10.410.10 InterPro:IPR020901 SUPFAM:SSF57362
PROSITE:PS00280 GO:GO:0005581 InterPro:IPR008160 Pfam:PF01391
eggNOG:NOG12793 GO:GO:0005604 EMBL:AC174646 MEROPS:I02.967 CTD:1294
HOGENOM:HOG000111866 HOVERGEN:HBG051053 KO:K16628 OMA:RRVCTTA
OrthoDB:EOG4J117P EMBL:U32107 EMBL:S63654 IPI:IPI00134652
PIR:A45748 RefSeq:NP_031764.2 UniGene:Mm.6200 HSSP:P12111
ProteinModelPortal:Q63870 SMR:Q63870 STRING:Q63870
PhosphoSite:Q63870 PaxDb:Q63870 PRIDE:Q63870
Ensembl:ENSMUST00000026740 Ensembl:ENSMUST00000112070 GeneID:12836
KEGG:mmu:12836 UCSC:uc009rrh.1 GeneTree:ENSGT00700000104250
InParanoid:Q63870 NextBio:282356 Bgee:Q63870 CleanEx:MM_COL7A1
Genevestigator:Q63870 Uniprot:Q63870
Length = 2944
Score = 127 (49.8 bits), Expect = 0.00067, P = 0.00067
Identities = 86/270 (31%), Positives = 103/270 (38%)
Query: 256 PVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRG-- 313
P G + G P GPP S GV G+ P S G P+G
Sbjct: 1289 PPGSTQAKGERGFPGPEGPPGSPGLPGVPGS-PGIKGSTGRPGPRGEQGERGPQGPKGEP 1347
Query: 314 --PGY-EASKGPGYDASKAPSYDPTKGPSYDP-AKGPGYDP-TKGP-GYD--AQKGSNYD 365
PG GPG+ K DP GPS P ++GP DP +GP G + KG D
Sbjct: 1348 GEPGQITGGGGPGFPGKKG---DP--GPSGPPGSRGPVGDPGPRGPPGLPGISVKGDKGD 1402
Query: 366 -AQRGP-NYDIHRGPSYDPQRGL-GYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEA 422
+RGP I DP GL G GP R PG + ++ G GP
Sbjct: 1403 RGERGPPGPGIGASEQGDP--GLPGLPGSPGPQGPAGR-PGEKGEK--GDCEDGGPGLPG 1457
Query: 423 QRAPSYIPQ-RG-PGYDLQRG-QGYDMRRA-PSYDPSRG----TGFDGAPRGAAPHGQVP 474
Q P P RG PG +G +G P RG G G P GAA H
Sbjct: 1458 QPGPPGEPGLRGAPGMTGPKGDRGLTGTPGEPGVKGERGHPGPVGPQGLP-GAAGH---- 1512
Query: 475 PPLNNVPYGSATPPARSGS-GQP-RGGNPA 502
P + P G P R G G+P R G+PA
Sbjct: 1513 PGVEG-PEGPPGPTGRRGEKGEPGRPGDPA 1541
>UNIPROTKB|F1MA98 [details] [associations]
symbol:Tpr "Protein Tpr" species:10116 "Rattus norvegicus"
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0000189 "MAPK import into
nucleus" evidence=ISS] [GO:0000776 "kinetochore" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0004828 "serine-tRNA ligase activity"
evidence=IEA] [GO:0005487 "nucleocytoplasmic transporter activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005635
"nuclear envelope" evidence=ISS] [GO:0005643 "nuclear pore"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005868
"cytoplasmic dynein complex" evidence=ISS] [GO:0006404 "RNA import
into nucleus" evidence=ISS] [GO:0006405 "RNA export from nucleus"
evidence=ISS] [GO:0006434 "seryl-tRNA aminoacylation" evidence=IEA]
[GO:0006999 "nuclear pore organization" evidence=ISS] [GO:0007094
"mitotic spindle assembly checkpoint" evidence=ISS] [GO:0010965
"regulation of mitotic sister chromatid separation" evidence=ISS]
[GO:0019898 "extrinsic to membrane" evidence=ISS] [GO:0031072 "heat
shock protein binding" evidence=ISS] [GO:0031453 "positive
regulation of heterochromatin assembly" evidence=ISS] [GO:0031965
"nuclear membrane" evidence=IDA] [GO:0031990 "mRNA export from
nucleus in response to heat stress" evidence=ISS] [GO:0034399
"nuclear periphery" evidence=IDA] [GO:0034605 "cellular response to
heat" evidence=ISS] [GO:0035457 "cellular response to
interferon-alpha" evidence=ISS] [GO:0042307 "positive regulation of
protein import into nucleus" evidence=ISS] [GO:0042405 "nuclear
inclusion body" evidence=IDA] [GO:0042803 "protein homodimerization
activity" evidence=ISS] [GO:0044615 "nuclear pore nuclear basket"
evidence=IDA] [GO:0045947 "negative regulation of translational
initiation" evidence=ISS] [GO:0046827 "positive regulation of
protein export from nucleus" evidence=IMP] [GO:0046832 "negative
regulation of RNA export from nucleus" evidence=ISS] [GO:0051019
"mitogen-activated protein kinase binding" evidence=ISS]
[GO:0070849 "response to epidermal growth factor stimulus"
evidence=ISS] [GO:0072686 "mitotic spindle" evidence=ISS]
[GO:0090267 "positive regulation of mitotic cell cycle spindle
assembly checkpoint" evidence=ISS] [GO:0090316 "positive regulation
of intracellular protein transport" evidence=ISS] [GO:1901673
"regulation of spindle assembly involved in mitosis" evidence=ISS]
[GO:0005215 "transporter activity" evidence=ISS] [GO:0006606
"protein import into nucleus" evidence=ISS] [GO:0006611 "protein
export from nucleus" evidence=ISS] [GO:0031647 "regulation of
protein stability" evidence=ISS] [GO:0042306 "regulation of protein
import into nucleus" evidence=IMP] [GO:0043495 "protein anchor"
evidence=ISS] [GO:0043578 "nuclear matrix organization"
evidence=ISS] [GO:0051292 "nuclear pore complex assembly"
evidence=IMP] InterPro:IPR012929 InterPro:IPR015866 Pfam:PF07926
RGD:1310664 GO:GO:0005524 GO:GO:0005737 GO:GO:0005643 GO:GO:0006606
KO:K09291 InterPro:IPR009053 SUPFAM:SSF46579
GeneTree:ENSGT00700000104019 GO:GO:0004828 GO:GO:0006434
Gene3D:1.10.287.40 CTD:7175 IPI:IPI00950468 RefSeq:NP_001100655.1
UniGene:Rn.58980 Ensembl:ENSRNOT00000063833 GeneID:304862
KEGG:rno:304862 NextBio:653738 ArrayExpress:F1MA98 Uniprot:F1MA98
Length = 2360
Score = 124 (48.7 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 44/186 (23%), Positives = 88/186 (47%)
Query: 48 PEVME-QKIASQ---HVE-MQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS 102
P+ E +K+ S+ H + +Q+L E RL A L Q+ +Q L + +++
Sbjct: 1349 PDTEEYRKLLSEKEIHTKRIQQLNEEVGRLKAEIARSNASLTNNQNLIQSLKEDLSKVRT 1408
Query: 103 ERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR 162
E+E ++L KI ++ ++KT VK ++ KT+ + L A+++ + Q + D Q
Sbjct: 1409 EKESIQKDLDAKIIDIQEKVKTITQVKKIGRRYKTQFEELK-AQQKAMETSTQSSGDHQE 1467
Query: 163 AHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKL 222
H VQ++ L L + G E +K ++ + +++ + +E+ +L
Sbjct: 1468 QHISVQEMQELKDNLSQSETKTKSLEGQVENLQKTLSEKETEARSLQEQTAQLQSELSRL 1527
Query: 223 RAELMN 228
R EL +
Sbjct: 1528 RQELQD 1533
Score = 53 (23.7 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 19/61 (31%), Positives = 25/61 (40%)
Query: 243 GATGNSENETSGRPVGQNAYE--DGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQS 300
G G NE +G G + YE D G G G P T +G G ++ A + S
Sbjct: 1979 GDEGEDSNEGTGSADGNDGYEADDAEG---GDGTDPGTETEESMG-GAESNQRAADSQNS 2034
Query: 301 G 301
G
Sbjct: 2035 G 2035
>UNIPROTKB|I3LNI2 [details] [associations]
symbol:TFG "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043123 "positive regulation of I-kappaB
kinase/NF-kappaB cascade" evidence=IEA] [GO:0042802 "identical
protein binding" evidence=IEA] [GO:0004871 "signal transducer
activity" evidence=IEA] GO:GO:0043123 GO:GO:0004871 OMA:YTTQTSQ
GeneTree:ENSGT00510000047809 EMBL:CU928320 EMBL:AEMK01189642
Ensembl:ENSSSCT00000026186 Uniprot:I3LNI2
Length = 340
Score = 116 (45.9 bits), Expect = 0.00067, P = 0.00067
Identities = 75/301 (24%), Positives = 112/301 (37%)
Query: 216 ATEVEKLRAELMNAPNVDRRAAD-----GSYGGATGNSENET-SGRPVGQNAYEDGYGVP 269
+++V+ LR EL+ N R D G G +T +EN+T GR + A D G
Sbjct: 38 SSQVKYLRRELIELRNKVNRLLDSLEPPGEPGPSTNITENDTVDGREE-KPAASDSSGKQ 96
Query: 270 QGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKA 329
S + + + + +A G P P + S P AS +
Sbjct: 97 STQVMAASMSAFDPLKNQDEINKNVMSAF--GLTDDQVSGPPSAPAEDRSGTPDSIASSS 154
Query: 330 PSYDPTKGPSYDPAKGPGYDPTKGPGY-DAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGY 388
+ P P P + P G + Q Y Q G + P PQ+ G
Sbjct: 155 SAAHP---PGVQPQQPPYTGALTQAGQSEGQMYQQYPQQAGYGTQQPQAPPQPPQQS-GS 210
Query: 389 DMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYI--PQRGPGYDLQRGQGYDM 446
+ +G Y Q GP + Q+ GY Q P +A AP++ PQ+ P Q+ Q
Sbjct: 211 SLSKG--YSQQTGP-QQPQQFQGYGQQ--PTSQAP-APAFSGQPQQMPAQPPQQYQASSY 264
Query: 447 R-RAPSYDPSRGTGFDGAPRGAAPHGQVP--PPLNNVPYGSATPPARSGSGQPRGGNPAR 503
+ + S+ T + AP A+ G P P G PP + + P G NP
Sbjct: 265 PPQTYTTQTSQPTNYTVAP--ASQPGMAPSQPGAYQPRPGFTPPPGSTMTPLPSGSNPYA 322
Query: 504 R 504
R
Sbjct: 323 R 323
>UNIPROTKB|A8E651 [details] [associations]
symbol:EWSR1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001876 InterPro:IPR012677
Pfam:PF00641 PROSITE:PS01358 PROSITE:PS50102 PROSITE:PS50199
SMART:SM00360 SMART:SM00547 GO:GO:0005634 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG240581
GeneTree:ENSGT00530000063105 CTD:2130 HOGENOM:HOG000038010
HOVERGEN:HBG000970 KO:K13209 OMA:EGTSTGY OrthoDB:EOG42NJ15
EMBL:DAAA02045602 EMBL:BC153844 IPI:IPI00871084
RefSeq:NP_001103270.1 UniGene:Bt.33949 SMR:A8E651 STRING:A8E651
Ensembl:ENSBTAT00000023612 GeneID:534073 KEGG:bta:534073
InParanoid:A8E651 NextBio:20876260 Uniprot:A8E651
Length = 655
Score = 120 (47.3 bits), Expect = 0.00067, P = 0.00067
Identities = 73/278 (26%), Positives = 99/278 (35%)
Query: 239 GSYGGATGNSENETSGRPV-GQNAYEDGYGVPQ-GHGPP--PSATTAGVVGAGP---NTS 291
G+YG T S + GQ AY YG P G+ P P A + V G G +T+
Sbjct: 42 GTYGQPTDVSYTQAQTTATYGQTAYATSYGQPPTGYSTPAAPQAYSQPVQGYGTGAYDTT 101
Query: 292 TSAYAATQSGTPMRAAYDI-PRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPG-YD 349
T+ TQ+ ++AY P P Y + P A P + P G Y+
Sbjct: 102 TATVTTTQASYAAQSAYGTQPAYPAY--GQQPAATAPARPQDGNKPAETSQPQSSTGGYN 159
Query: 350 -PTKGPGYDAQKGSNYDAQRG--PNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYET 406
P+ G G Q +Y G P + PSY P Y + +YD T
Sbjct: 160 QPSLGYG---QSNYSYPQVPGSYPMQPVSAPPSYPPT---SYSSTQPTSYDQSSYSQQNT 213
Query: 407 QRVPG-YDVQRG----PVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFD 461
P Y Q Y Q SY PQ G Y Q Y +++ SY D
Sbjct: 214 YGQPSSYGQQSSYGQQSSYGQQPPTSYPPQTG-SYSQAPSQ-YS-QQSSSYGQQSSFRQD 270
Query: 462 GAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRGG 499
P +GQ + P + + G+ RGG
Sbjct: 271 H-PSSMGVYGQESGGFSG-PGENRSMSGPDNRGRGRGG 306
>UNIPROTKB|Q01844 [details] [associations]
symbol:EWSR1 "RNA-binding protein EWS" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005516 "calmodulin binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR001876 InterPro:IPR012677
Pfam:PF00641 PROSITE:PS01358 PROSITE:PS50096 PROSITE:PS50102
PROSITE:PS50199 SMART:SM00360 SMART:SM00547 GO:GO:0005886
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0046872 EMBL:CH471095 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 EMBL:AC002059 MIM:612160 Orphanet:97338
Pathway_Interaction_DB:bard1pathway eggNOG:NOG240581 EMBL:AL031186
MIM:612219 Orphanet:319 EMBL:X66899 EMBL:X72990 EMBL:X72991
EMBL:X72992 EMBL:X72993 EMBL:X72994 EMBL:X72995 EMBL:X72996
EMBL:X72997 EMBL:X72998 EMBL:X72999 EMBL:X73000 EMBL:X73001
EMBL:X73002 EMBL:X73003 EMBL:X73004 EMBL:Y07848 EMBL:CR456490
EMBL:AK056309 EMBL:AK056681 EMBL:AC000026 EMBL:BC000527
EMBL:BC004817 EMBL:BC011048 EMBL:BC072442 EMBL:Y08806 EMBL:AB016435
IPI:IPI00065554 IPI:IPI00293254 IPI:IPI00335961 IPI:IPI00872855
IPI:IPI00879259 PIR:A49358 RefSeq:NP_001156757.1
RefSeq:NP_001156759.1 RefSeq:NP_005234.1 RefSeq:NP_053733.2
UniGene:Hs.374477 PDB:2CPE PDBsum:2CPE ProteinModelPortal:Q01844
SMR:Q01844 IntAct:Q01844 MINT:MINT-2858561 STRING:Q01844
PhosphoSite:Q01844 DMDM:544261 PaxDb:Q01844 PRIDE:Q01844 DNASU:2130
Ensembl:ENST00000332035 Ensembl:ENST00000333395
Ensembl:ENST00000397938 Ensembl:ENST00000406548
Ensembl:ENST00000414183 GeneID:2130 KEGG:hsa:2130 UCSC:uc003aet.3
CTD:2130 GeneCards:GC22P029663 HGNC:HGNC:3508 HPA:CAB004230
MIM:133450 neXtProt:NX_Q01844 Orphanet:83469 PharmGKB:PA27921
HOGENOM:HOG000038010 HOVERGEN:HBG000970 KO:K13209 OMA:EGTSTGY
OrthoDB:EOG42NJ15 PhylomeDB:Q01844 ChiTaRS:EWSR1
EvolutionaryTrace:Q01844 GenomeRNAi:2130 NextBio:8605
ArrayExpress:Q01844 Bgee:Q01844 CleanEx:HS_EWSR1
Genevestigator:Q01844 GermOnline:ENSG00000182944 Uniprot:Q01844
Length = 656
Score = 120 (47.3 bits), Expect = 0.00068, P = 0.00067
Identities = 75/279 (26%), Positives = 102/279 (36%)
Query: 239 GSYGGATGNSENETSGRPV-GQNAYEDGYGVPQ-GHGPP--PSATTAGVVGAGP---NTS 291
G+YG T S + GQ AY YG P G+ P P A + V G G +T+
Sbjct: 42 GTYGQPTDVSYTQAQTTATYGQTAYATSYGQPPTGYTTPTAPQAYSQPVQGYGTGAYDTT 101
Query: 292 TSAYAATQSGTPMRAAYDI-PRGPGYEASKGPGYDASKAPS--YDPTKGPSYDPAKGPGY 348
T+ TQ+ ++AY P P Y + P A P PT+ + G GY
Sbjct: 102 TATVTTTQASYAAQSAYGTQPAYPAY--GQQPAATAPTRPQDGNKPTETSQPQSSTG-GY 158
Query: 349 D-PTKGPGYDAQKGSNYDAQRG--PNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYE 405
+ P+ G G Q +Y G P + PSY P Y + +YD
Sbjct: 159 NQPSLGYG---QSNYSYPQVPGSYPMQPVTAPPSYPPT---SYSSTQPTSYDQSSYSQQN 212
Query: 406 TQRVPG-YDVQRG----PVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGF 460
T P Y Q Y Q SY PQ G Y Q Y +++ SY
Sbjct: 213 TYGQPSSYGQQSSYGQQSSYGQQPPTSYPPQTG-SYSQAPSQ-YS-QQSSSYGQQSSFRQ 269
Query: 461 DGAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRGG 499
D P +GQ + P + + G+ RGG
Sbjct: 270 DH-PSSMGVYGQESGGFSG-PGENRSMSGPDNRGRGRGG 306
>UNIPROTKB|F1LN98 [details] [associations]
symbol:Ewsr1 "Protein Ewsr1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR012677 Pfam:PF00641 PROSITE:PS01358 PROSITE:PS50102
PROSITE:PS50199 SMART:SM00360 SMART:SM00547 RGD:1307258
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 GeneTree:ENSGT00530000063105 IPI:IPI00364603
Ensembl:ENSRNOT00000012634 ArrayExpress:F1LN98 Uniprot:F1LN98
Length = 656
Score = 120 (47.3 bits), Expect = 0.00068, P = 0.00067
Identities = 74/278 (26%), Positives = 100/278 (35%)
Query: 239 GSYGGATGNSENET-SGRPVGQNAYEDGYGVPQ-GHGPP--PSATTAGVVGAGP---NTS 291
G+YG T S + S GQ AY YG P G+ P P A + V G G +T+
Sbjct: 42 GTYGQPTDVSYTQAQSTATXGQTAYATSYGQPPTGYTTPTAPQAYSQPVQGYGTGAYDTT 101
Query: 292 TSAYAATQSGTPMRAAYDI-PRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPG-YD 349
T+ TQ+ ++AY P P Y + P A P + P G Y+
Sbjct: 102 TATVTTTQASYAAQSAYGTQPAYPAY--GQQPAATAPTRPQDGNKPAETSQPQSSTGGYN 159
Query: 350 -PTKGPGYDAQKGSNYDAQRG--PNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYET 406
P+ G G Q +Y G P + PSY P Y + +YD T
Sbjct: 160 QPSLGYG---QSNYSYPQVPGSYPMQPVTAPPSYPPT---SYSSSQPTSYDQSSYSQQNT 213
Query: 407 QRVPG-YDVQRG----PVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFD 461
P Y Q Y Q SY PQ G Y Q Y +++ SY D
Sbjct: 214 YGQPSSYGQQSSYGQQSSYGQQPPTSYPPQTG-SYSQAPSQ-YS-QQSSSYGQQSSFRQD 270
Query: 462 GAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRGG 499
P +GQ + P + + G+ RGG
Sbjct: 271 H-PSSMGVYGQESGGFSG-PGENRSLSGPDNRGRGRGG 306
>ZFIN|ZDB-GENE-030131-6410 [details] [associations]
symbol:tprb "translocated promoter region b (to
activated MET oncogene)" species:7955 "Danio rerio" [GO:0006606
"protein import into nucleus" evidence=IEA] [GO:0005643 "nuclear
pore" evidence=IEA] InterPro:IPR012929 Pfam:PF07926
ZFIN:ZDB-GENE-030131-6410 GO:GO:0005643 GO:GO:0006606 KO:K09291
EMBL:BX323056 GeneTree:ENSGT00700000104019 HOGENOM:HOG000139431
HOVERGEN:HBG009158 IPI:IPI00507729 RefSeq:NP_001025294.1
UniGene:Dr.52426 Ensembl:ENSDART00000017941 GeneID:558883
KEGG:dre:558883 CTD:558883 InParanoid:Q5RI09 OMA:RVSWEEQ
NextBio:20882676 Uniprot:Q5RI09
Length = 2352
Score = 125 (49.1 bits), Expect = 0.00071, Sum P(4) = 0.00071
Identities = 41/179 (22%), Positives = 75/179 (41%)
Query: 59 HVE-MQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAK 117
H++ +Q+L E RL A L Q ++Q L +G + ER+ ++ KI
Sbjct: 1367 HLKRIQQLVEETGRLKADAARSSGSLTTLQSQVQNLRENLGKVMVERDNLKKDQEAKILD 1426
Query: 118 MEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQL-TQDLQRAHTDVQQIPALLSE 176
++ ++KT VK ++ KT+ + L V E+L+A QD + Q++ L
Sbjct: 1427 IQEKIKTITQVKKIGRRYKTQYEELKVEYEKLVAAAASAPAQDQEAQQASAQELQNLKES 1486
Query: 177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRR 235
L G E + + + ++ + TE+ +LR EL + + R
Sbjct: 1487 LNQSETRIRELEGQLENLNRTVGEREMEARSAQEQASRLQTELTRLRQELQEKSSQEER 1545
Score = 48 (22.0 bits), Expect = 0.00071, Sum P(4) = 0.00071
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 276 PSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPT 335
P +T+ G+ A P+TS+ A+ S +P A PR E S + P+ PT
Sbjct: 1810 PLSTSTGLWSATPSTSS---ASAVSASPGSALSKRPREEEQE-SMSADTQSQDEPNDSPT 1865
Score = 46 (21.3 bits), Expect = 0.00071, Sum P(4) = 0.00071
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 469 PHGQVPPPLNNVPYGSATPP-ARSGSGQPRGGNPARR 504
P P ++ S+ PP ARSGSG+ G+ R
Sbjct: 2297 PSTSQEPSSSSADTSSSQPPKARSGSGRQWTGSRGSR 2333
Score = 45 (20.9 bits), Expect = 0.00071, Sum P(4) = 0.00071
Identities = 37/153 (24%), Positives = 55/153 (35%)
Query: 325 DASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQK--GSNYDAQR---GPNYDIHRGPS 379
D S S D + D +GP DPT PG + ++ G+ QR +++ +
Sbjct: 2004 DESNEESRDDNEAYEGDDTEGP--DPTD-PGTETEESLGATDSTQRMADSQSFESNTLEM 2060
Query: 380 YD-PQRGLGYDMQRGPNYDMQR-GPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYD 437
++ P + P P P ++ GP + QR P+ G G
Sbjct: 2061 FEVPVTSSAPRPPQSPRRPQHPLPPRLNILAAPAQEL--GPPAQVQRLPARRQSVGRGLQ 2118
Query: 438 LQRG-----QGY---DMRRAPSYD--PSRGTGF 460
L G Q + D R PS P R GF
Sbjct: 2119 LASGMASSAQPFFEDDDRMVPSTPTLPLRSDGF 2151
>FB|FBgn0038642 [details] [associations]
symbol:Muc91C "Mucin 91C" species:7227 "Drosophila
melanogaster" [GO:0005201 "extracellular matrix structural
constituent" evidence=ISM] [GO:0031012 "extracellular matrix"
evidence=ISM] [GO:0022008 "neurogenesis" evidence=IMP]
EMBL:AE014297 GO:GO:0022008 eggNOG:NOG12793 GO:GO:0031012
GO:GO:0005201 GeneTree:ENSGT00700000104744 RefSeq:NP_650744.1
UniGene:Dm.10760 EnsemblMetazoa:FBtr0083687 GeneID:42246
KEGG:dme:Dmel_CG7709 UCSC:CG7709-RA CTD:42246 FlyBase:FBgn0038642
InParanoid:Q9VE45 OMA:GPYPSAP PhylomeDB:Q9VE45 GenomeRNAi:42246
NextBio:827869 ArrayExpress:Q9VE45 Bgee:Q9VE45 Uniprot:Q9VE45
Length = 950
Score = 130 (50.8 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 68/278 (24%), Positives = 105/278 (37%)
Query: 224 AELMNAPNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGV 283
+ L +AP+ + ++ GS+ A +S + S +Y + P S++++G
Sbjct: 580 SSLYSAPS--KGSSGGSFQSAPSSSYSAPSASANSGGSYPSAPS--SSYSAPSSSSSSG- 634
Query: 284 VGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPA 343
G + +S+Y+A SG+ Y P P S P A+ SY SY A
Sbjct: 635 -GPYASAPSSSYSAPSSGSNSGGPY--PAAPSSSYS-APSASANSGGSYPSAPSSSYS-A 689
Query: 344 KGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPG 403
PG + + GP Y A S+Y A P+ + G Y Y P+ G
Sbjct: 690 PSPGSN-SGGP-YPAAPSSSYSA---PSPSANSGGPYASAPSSSYS---APSSSSNSGGP 741
Query: 404 Y-----ETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGT 458
Y + P G Y + + SY P L G Y + SY +
Sbjct: 742 YAAAPSSSYSAPSSSSSSGGPYPSAPSSSY---SAPSSSLSSGGPYPSAPSSSYAAPSPS 798
Query: 459 GFDGAPRGAAPHGQVPPPLN--NVPYGS-ATPPARSGS 493
G P AAP P+ + YG+ A+ P+ S S
Sbjct: 799 SNSGGPYPAAPSNSYSAPIAPPSSSYGAPASGPSPSFS 836
Score = 38 (18.4 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 28 VSGMRPPMPGAFPPFDMMP 46
VS PP G P F+ P
Sbjct: 142 VSSYLPPASGPAPSFNSAP 160
>ZFIN|ZDB-GENE-041221-3 [details] [associations]
symbol:prnprs3 "prion protein, related sequence 3"
species:7955 "Danio rerio" [GO:0005509 "calcium ion binding"
evidence=IEA] [GO:0005544 "calcium-dependent phospholipid binding"
evidence=IEA] [GO:0051260 "protein homooligomerization"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0048854
"brain morphogenesis" evidence=IMP] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0007156 "homophilic cell adhesion" evidence=IDA]
[GO:0021731 "trigeminal motor nucleus development" evidence=IMP]
[GO:0042981 "regulation of apoptotic process" evidence=IMP]
InterPro:IPR001464 InterPro:IPR022416 ZFIN:ZDB-GENE-041221-3
GO:GO:0005886 GO:GO:0042981 GO:GO:0051260 GO:GO:0005509
GO:GO:0007156 GO:GO:0005544 PANTHER:PTHR10502 GO:GO:0048854
Gene3D:1.10.790.10 SUPFAM:SSF54098 HOVERGEN:HBG056090 EMBL:AJ620614
IPI:IPI00679275 RefSeq:NP_001013316.1 UniGene:Dr.162496
UniGene:Dr.84038 ProteinModelPortal:Q5K4F8 GeneID:503702
KEGG:dre:503702 CTD:503702 InParanoid:Q5K4F8 NextBio:20866258
ArrayExpress:Q5K4F8 GO:GO:0021731 Uniprot:Q5K4F8
Length = 567
Score = 119 (46.9 bits), Expect = 0.00071, P = 0.00071
Identities = 69/217 (31%), Positives = 92/217 (42%)
Query: 236 AADGSYGGATGNSENETSGRPVGQNAYEDGYG----VPQ--GHGPPPSATTAGVVGAGPN 289
++ G+ GG++ +S + +S + + G PQ PPP G G P
Sbjct: 43 SSSGNKGGSSSSSSSSSSSKGTSSHGTHTSPGNYPRQPQVPNQNPPPYP---GAGGGYPG 99
Query: 290 TSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYD 349
A + G P + +Y P GY ++G GY A Y P +G Y PA+G GY
Sbjct: 100 QGRYPPAGSNPGYPNQGSY--PGRAGYP-NQG-GYPAQGG--Y-PAQG-GY-PAQG-GY- 148
Query: 350 PTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRG-PNYDMQRGPGYET-- 406
P +G GY AQ G Y AQ G + G S P +G GY Q G P G G +
Sbjct: 149 PAQG-GYPAQGG--YPAQGGYPQGNYPGRSGYPGQG-GYPAQGGYPGGASYPGAGAGSYP 204
Query: 407 QRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQG 443
R PG + PV + P Y P RG Q G G
Sbjct: 205 NRYPGGNPY--PVGGSY--PGY-PVRGGSSPNQFGGG 236
>UNIPROTKB|F1NL02 [details] [associations]
symbol:COL22A1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005198 "structural molecule activity"
evidence=IEA] [GO:0005587 "collagen type IV" evidence=IEA]
[GO:0030198 "extracellular matrix organization" evidence=IEA]
[GO:0071230 "cellular response to amino acid stimulus"
evidence=IEA] InterPro:IPR002035 Pfam:PF00092 PROSITE:PS50234
SMART:SM00327 InterPro:IPR008985 SUPFAM:SSF49899 InterPro:IPR008160
Pfam:PF01391 InterPro:IPR001791 SMART:SM00210
GeneTree:ENSGT00700000104250 OMA:KRENGAQ EMBL:AADN02037495
EMBL:AADN02037496 EMBL:AADN02037497 EMBL:AADN02037498
IPI:IPI00577055 Ensembl:ENSGALT00000026109 Uniprot:F1NL02
Length = 1588
Score = 124 (48.7 bits), Expect = 0.00072, P = 0.00072
Identities = 78/265 (29%), Positives = 99/265 (37%)
Query: 256 PVGQNAYEDGYGVPQGHGPPPSAT-TAGVVGA-GPNTSTSAYAATQSGTPMRAAYDIPRG 313
P G E G P G G PP G +G GP ++G P A P G
Sbjct: 1248 PPGPRG-EPGATGPAGRGGPPGKDGDTGPIGPQGPRGLRGQPG--KNGLPGSAGEPGPAG 1304
Query: 314 -PGYEASKG-------PGYDASKAPSYDP-TKGP-SYDPAKG-PGYDPTKG----PGYDA 358
PG + +KG PG+ + P DP KGP + A G PG +KG PG
Sbjct: 1305 NPGPKGNKGENGSPGLPGFIGPRGPPGDPGEKGPPGKEGAPGKPGETGSKGERGEPGIKG 1364
Query: 359 QKGSNYDAQRGPNYDIHRGPSYDPQRGL-GYDMQRGPNYDM-QRGP-GYETQRVPGYDVQ 415
+KG Q+GP + P +G G GP D Q GP G Q PG+
Sbjct: 1365 EKGPQ--GQKGPPGE----PGIPGHKGHPGLMGPHGPPGDTGQVGPPGPPGQ--PGFPGP 1416
Query: 416 RG--PVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQV 473
RG P E R + Q L Y + + P P+ G P P G+
Sbjct: 1417 RGEPPSLETLRR---LIQEELAKQLDAKLAYLLAQIP---PAHVKASHGRPGPPGPPGKE 1470
Query: 474 PPPLNNVPYGSATPPARSGSGQPRG 498
P P G P ++GS P G
Sbjct: 1471 GLPGRTGPPGEPGRPGQTGSEGPPG 1495
>UNIPROTKB|P10163 [details] [associations]
symbol:PRB4 "Basic salivary proline-rich protein 4"
species:9606 "Homo sapiens" [GO:0005576 "extracellular region"
evidence=NAS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] GO:GO:0005576
InterPro:IPR026086 PANTHER:PTHR23203 EMBL:K03207 EMBL:X07882
EMBL:X07715 EMBL:AC010176 EMBL:BC130386 EMBL:S80916 EMBL:X07704
IPI:IPI00019482 PIR:S03176 RefSeq:NP_001248328.1 RefSeq:NP_002714.2
UniGene:Hs.528651 DisProt:DP00119 STRING:P10163 DMDM:158517854
PaxDb:P10163 PRIDE:P10163 GeneID:5545 KEGG:hsa:5545 CTD:5545
GeneCards:GC12M011460 H-InvDB:HIX0079490 HGNC:HGNC:9340 MIM:180990
neXtProt:NX_P10163 PharmGKB:PA33702 GenomeRNAi:5545 NextBio:21484
CleanEx:HS_PRB4 Genevestigator:P10163 GermOnline:ENSG00000121335
Uniprot:P10163
Length = 310
Score = 115 (45.5 bits), Expect = 0.00073, P = 0.00073
Identities = 72/250 (28%), Positives = 92/250 (36%)
Query: 267 GVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGP-GYD 325
G P+G PP + G P+ Q G + P PG S+ P G
Sbjct: 76 GKPEGR-PPQGGNQSQ--GPPPHPGKPERPPPQGGNQSQGP---PPHPGKPESRPPQGGH 129
Query: 326 ASKAPSYDPTKGPSYDPAKG----PGYDPTKG-PGYDAQKGSNYDAQRGPNYDIHRG-PS 379
S+ P P K P P +G G P G P +G N +GP H G P
Sbjct: 130 QSQGPPPTPGK-PEGPPPQGGNQSQGTPPPPGKPEGRPPQGGNQS--QGP--PPHPGKPE 184
Query: 380 YDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQ 439
P +G G R P PG + +R P Q G ++Q P + P + G Q
Sbjct: 185 RPPPQG-GNQSHRPPP-----PPG-KPERPPP---QGGN--QSQGPPPH-PGKPEGPPPQ 231
Query: 440 RGQGYDMRRAPSYDPSRGTGFDG-APRGAAPHG--QVPPPLNNVPYGSATPPARSGSGQP 496
G R+P P +G P+G P G Q PPP P PPA G P
Sbjct: 232 EGNKSRSARSPPGKPQGPPQQEGNKPQGPPPPGKPQGPPPPGGNPQQPQAPPAGKPQGPP 291
Query: 497 ---RGGNPAR 503
+GG P R
Sbjct: 292 PPPQGGRPPR 301
>MGI|MGI:1932491 [details] [associations]
symbol:Prp2 "proline rich protein 2" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0005576 "extracellular
region" evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
MGI:MGI:1932491 GO:GO:0005576 InterPro:IPR026086 PANTHER:PTHR23203
UniGene:Mm.425348 UniGene:Mm.484054 CleanEx:MM_PRH1 EMBL:M23236
EMBL:M12100 EMBL:M19419 IPI:IPI00474263 IPI:IPI00855123 PIR:A28996
PIR:D29149 UniGene:Mm.333439 Genevestigator:P05143
GermOnline:ENSMUSG00000058295 Uniprot:P05143
Length = 317
Score = 115 (45.5 bits), Expect = 0.00076, P = 0.00076
Identities = 67/242 (27%), Positives = 77/242 (31%)
Query: 267 GVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGP-GYD 325
G P GP P GP G R P PG + P G
Sbjct: 79 GPPPPGGPQPRPPQGPPPPGGPQPRPPQGPPPPGGPQPRPPQG-PPPPGGPQPRPPQGPP 137
Query: 326 ASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRG 385
P P +GP P GP P +GP A G +GP GP P +G
Sbjct: 138 PPGGPQQRPPQGPP--PPGGPQPRPPQGPPPPA--GPQPRPPQGPPPPA--GPHLRPTQG 191
Query: 386 ---LGYDMQRGPNYDMQRGPGYETQRVP-GYDVQRGPVYEAQRAPSYIPQRGPGYDLQRG 441
G QR P PG R P G GP + P P GP +
Sbjct: 192 PPPTGGPQQRYPQSPPP--PGGPQPRPPQGPPPPGGPHPRPTQGP---PPTGP--QPRPT 244
Query: 442 QGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQ--PRGG 499
QG P P +G G P+ P G PPP P + P G Q P G
Sbjct: 245 QGPPPTGGPQQRPPQGPPPPGGPQPRPPQGP-PPPTGPQPRPTQGPHPTGGPQQTPPLAG 303
Query: 500 NP 501
NP
Sbjct: 304 NP 305
>UNIPROTKB|F1SFA7 [details] [associations]
symbol:COL1A2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005581 "collagen" evidence=IEA] [GO:0005201
"extracellular matrix structural constituent" evidence=IEA]
InterPro:IPR000885 Pfam:PF01410 ProDom:PD002078 PROSITE:PS51461
SMART:SM00038 GO:GO:0005581 InterPro:IPR008160 Pfam:PF01391
GO:GO:0005201 GeneTree:ENSGT00660000095287 EMBL:CU915372
Ensembl:ENSSSCT00000016699 OMA:KGETGNK ArrayExpress:F1SFA7
Uniprot:F1SFA7
Length = 1366
Score = 123 (48.4 bits), Expect = 0.00078, P = 0.00078
Identities = 83/271 (30%), Positives = 99/271 (36%)
Query: 243 GATGNSENETSGRPVGQNAYEDGYGVPQGHGPP-----PS-ATTAGVVGAGPNTSTSAYA 296
GA G N + P G + G G GPP P A TAG VG
Sbjct: 520 GAPGPDGNNGAQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPAGTAGEVGKPGERGIPG-- 577
Query: 297 ATQSGTPMRAAYDIPRGP-GYEASKGP-GYDASKAPSYDPTKGPSYDPAKG-PGYDPTKG 353
+ G P A RGP G + GP G S+ PS P GP D KG PG
Sbjct: 578 --EFGLPGPAGPRGERGPPGESGAAGPAGPIGSRGPSGPP--GP--DGNKGEPGV--LGA 629
Query: 354 PGYDAQKG-SNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRG-PGYETQRVP- 410
PG G S +RG I G + GL D+ P D RG PG P
Sbjct: 630 PGTAGPSGPSGLPGERGAA-GIPGGKGEKGETGLRGDVG-SPGRDGARGAPGAVGAPGPA 687
Query: 411 GYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAP--RGA- 467
G + RG A A P+ PG +RG+ P+ G GA RG
Sbjct: 688 GANGDRGEAGPAGPAGPAGPRGSPG---ERGEVGPAGPNGFAGPAGAAGQPGAKGERGTK 744
Query: 468 APHGQVPPPLNNVPYGSATPPARSGSGQPRG 498
P G+ P P G+A P +G P G
Sbjct: 745 GPKGENGPVGPTGPVGAAGPAGPNGPPGPAG 775
>UNIPROTKB|Q9XSJ7 [details] [associations]
symbol:COL1A1 "Collagen alpha-1(I) chain" species:9615
"Canis lupus familiaris" [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005581 "collagen" evidence=IEA] [GO:0005201
"extracellular matrix structural constituent" evidence=IEA]
InterPro:IPR000885 InterPro:IPR001007 Pfam:PF00093 Pfam:PF01410
ProDom:PD002078 PROSITE:PS01208 PROSITE:PS50184 PROSITE:PS51461
SMART:SM00038 SMART:SM00214 GO:GO:0046872 GO:GO:0005581
InterPro:IPR008160 Pfam:PF01391 eggNOG:NOG12793 GO:GO:0005201
CTD:1277 HOGENOM:HOG000085654 HOVERGEN:HBG004933 KO:K06236
OrthoDB:EOG4S4PHP EMBL:AF153062 RefSeq:NP_001003090.1
UniGene:Cfa.100 STRING:Q9XSJ7 GeneID:403651 KEGG:cfa:403651
InParanoid:Q9XSJ7 NextBio:20817156 Uniprot:Q9XSJ7
Length = 1460
Score = 123 (48.4 bits), Expect = 0.00084, P = 0.00084
Identities = 86/288 (29%), Positives = 101/288 (35%)
Query: 230 PNVDRR-AADGSYG--GATGNSENETSGRPVGQNAYEDGYGVP-----QGHGPPPSATT- 280
P D + A G G GA G++ P G G P +G PP AT
Sbjct: 813 PGADGQPGAKGEPGDAGAKGDAGPPGPAGPTGPPGPIGNVGAPGPKGARGSAGPPGATGF 872
Query: 281 AGVVG-AGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGP-GYDASKAPSYDP-TKG 337
G G GP S A G P A + G G GP G P P G
Sbjct: 873 PGAAGRVGP-PGPSGNAGPP-GPPGPAGKE--GGKGARGETGPAGRPGEVGPPGPPGPAG 928
Query: 338 PSYDP-AKGPGYDP-TKGP-GYDAQKGS-NYDAQRGPN-YDIHRGPSYDP-QRG-LGYDM 390
P A GP P T GP G Q+G QRG + GPS +P ++G G
Sbjct: 929 EKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGTSG 988
Query: 391 QRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAP 450
+RGP M GP PG GP E+ R S + PG D G D
Sbjct: 989 ERGPPGPM--GP-------PGL---AGPPGESGREGSPGAEGSPGRDGSPGPKGDRGETG 1036
Query: 451 SYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRG 498
P G GAP P G+ P G A P G+ P G
Sbjct: 1037 PAGPPGAPGAPGAPGPVGPAGKNGDRGETGPAGPAGPIGPVGARGPAG 1084
>UNIPROTKB|F1Q3I5 [details] [associations]
symbol:COL1A1 "Collagen alpha-1(I) chain" species:9615
"Canis lupus familiaris" [GO:0005581 "collagen" evidence=IEA]
[GO:0005201 "extracellular matrix structural constituent"
evidence=IEA] InterPro:IPR000885 InterPro:IPR001007 Pfam:PF00093
Pfam:PF01410 ProDom:PD002078 PROSITE:PS01208 PROSITE:PS50184
PROSITE:PS51461 SMART:SM00038 SMART:SM00214 GO:GO:0005581
InterPro:IPR008160 Pfam:PF01391 GO:GO:0005201
GeneTree:ENSGT00660000095287 OMA:VAYMDQQ EMBL:AAEX03006535
Ensembl:ENSCAFT00000026953 Uniprot:F1Q3I5
Length = 1464
Score = 123 (48.4 bits), Expect = 0.00084, P = 0.00084
Identities = 86/288 (29%), Positives = 101/288 (35%)
Query: 230 PNVDRR-AADGSYG--GATGNSENETSGRPVGQNAYEDGYGVP-----QGHGPPPSATT- 280
P D + A G G GA G++ P G G P +G PP AT
Sbjct: 817 PGADGQPGAKGEPGDAGAKGDAGPPGPAGPTGPPGPIGNVGAPGPKGARGSAGPPGATGF 876
Query: 281 AGVVG-AGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGP-GYDASKAPSYDP-TKG 337
G G GP S A G P A + G G GP G P P G
Sbjct: 877 PGAAGRVGP-PGPSGNAGPP-GPPGPAGKE--GGKGARGETGPAGRPGEVGPPGPPGPAG 932
Query: 338 PSYDP-AKGPGYDP-TKGP-GYDAQKGS-NYDAQRGPN-YDIHRGPSYDP-QRG-LGYDM 390
P A GP P T GP G Q+G QRG + GPS +P ++G G
Sbjct: 933 EKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASG 992
Query: 391 QRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAP 450
+RGP M GP PG GP E+ R S + PG D G D
Sbjct: 993 ERGPPGPM--GP-------PGL---AGPPGESGREGSPGAEGSPGRDGSPGPKGDRGETG 1040
Query: 451 SYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRG 498
P G GAP P G+ P G A P G+ P G
Sbjct: 1041 PAGPPGAPGAPGAPGPVGPAGKNGDRGETGPAGPAGPIGPVGARGPAG 1088
>UNIPROTKB|E1B7H2 [details] [associations]
symbol:COL7A1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0004867 "serine-type endopeptidase inhibitor activity"
evidence=IEA] InterPro:IPR002035 InterPro:IPR002223
InterPro:IPR003961 Pfam:PF00014 Pfam:PF00041 Pfam:PF00092
PRINTS:PR00759 PROSITE:PS50234 PROSITE:PS50279 PROSITE:PS50853
SMART:SM00060 SMART:SM00327 Gene3D:2.60.40.10 InterPro:IPR013783
GO:GO:0004867 SUPFAM:SSF49265 Gene3D:4.10.410.10 InterPro:IPR020901
SUPFAM:SSF57362 PROSITE:PS00280 InterPro:IPR008160 Pfam:PF01391
GO:GO:0005604 OMA:RRVCTTA GeneTree:ENSGT00700000104301
EMBL:DAAA02054431 IPI:IPI00706167 Ensembl:ENSBTAT00000025418
Uniprot:E1B7H2
Length = 2934
Score = 126 (49.4 bits), Expect = 0.00085, P = 0.00085
Identities = 83/296 (28%), Positives = 107/296 (36%)
Query: 230 PNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPN 289
P + +A + GA G G E G P GP G GA
Sbjct: 1642 PGLPGKAGERGLRGAPGARGPVGEKGDQGDPGEEGRNGSPGPSGPKGDRGEPGPPGAPGR 1701
Query: 290 TSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPS-YDPTKGPSYDPA-KGP- 346
A + G P + PRGP + PG + S GP DP +GP
Sbjct: 1702 LVDVGLGAGEKGEPGDRGQEGPRGPKGDPGP-PGASGERGVSGLRGPPGPQGDPGVRGPA 1760
Query: 347 GYDPTKGP-GYDAQKGSN----YDAQRGPNYDIHRGPSYDPQR-GL-GYDMQRGPNYDMQ 399
G +GP G D + G + GPN + G + DP R GL G ++GP
Sbjct: 1761 GEKGDRGPPGLDGRSGLDGKPGASGPPGPNGAM--GKAGDPGRDGLPGLRGEQGP--PGP 1816
Query: 400 RGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYD----PS 455
GP + PG D + G + P PG D ++G+ D AP + P
Sbjct: 1817 AGPPGAPGK-PGEDGKPG-LNGKNGEPG-----DPGEDGRKGEKGDSG-APGREGRDGPK 1868
Query: 456 RGTGFDGAPRGAAPHG---QVPPPLNNVPY--GSATPPARSGSGQPRG--GNPARR 504
G G+P P G QV PP P GS+ P G PRG G P R
Sbjct: 1869 GERGAPGSPGLQGPPGLPGQVGPPGQGFPGVPGSSGPKGDRGETGPRGEQGLPGER 1924
>MGI|MGI:88458 [details] [associations]
symbol:Col5a2 "collagen, type V, alpha 2" species:10090 "Mus
musculus" [GO:0001501 "skeletal system development" evidence=IMP]
[GO:0005201 "extracellular matrix structural constituent"
evidence=IEA] [GO:0005576 "extracellular region" evidence=IEA]
[GO:0005578 "proteinaceous extracellular matrix" evidence=IEA]
[GO:0005581 "collagen" evidence=IDA] [GO:0005588 "collagen type V"
evidence=ISO] [GO:0030199 "collagen fibril organization"
evidence=ISO;IMP] [GO:0043588 "skin development" evidence=ISO;IMP]
[GO:0046332 "SMAD binding" evidence=IPI] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0048592 "eye morphogenesis"
evidence=ISO] [GO:0071230 "cellular response to amino acid
stimulus" evidence=IDA] InterPro:IPR000885 InterPro:IPR001007
Pfam:PF00093 Pfam:PF01410 ProDom:PD002078 PROSITE:PS01208
PROSITE:PS50184 PROSITE:PS51461 SMART:SM00038 SMART:SM00214
MGI:MGI:88458 GO:GO:0043588 GO:GO:0046872 GO:GO:0030199
GO:GO:0001501 GO:GO:0005581 InterPro:IPR008160 Pfam:PF01391
eggNOG:NOG12793 GO:GO:0071230 GO:GO:0005201 GO:GO:0048592
GeneTree:ENSGT00660000095287 HOVERGEN:HBG004933 KO:K06236
GO:GO:0005588 CTD:1290 OMA:PDHKPVW OrthoDB:EOG4K0QMS ChiTaRS:COL5A2
EMBL:L02918 EMBL:AK132413 EMBL:AK139130 EMBL:AK147220 EMBL:AK147328
EMBL:AK151929 EMBL:AK160008 EMBL:BC043696 EMBL:BC055077
IPI:IPI00121120 PIR:I49607 RefSeq:NP_031763.2 UniGene:Mm.10299
ProteinModelPortal:Q3U962 SMR:Q3U962 STRING:Q3U962
PhosphoSite:Q3U962 PRIDE:Q3U962 Ensembl:ENSMUST00000086430
GeneID:12832 KEGG:mmu:12832 UCSC:uc007awr.1 InParanoid:Q3U962
NextBio:282338 Bgee:Q3U962 CleanEx:MM_COL5A2 Genevestigator:Q3U962
Uniprot:Q3U962
Length = 1497
Score = 123 (48.4 bits), Expect = 0.00087, P = 0.00086
Identities = 88/296 (29%), Positives = 111/296 (37%)
Query: 232 VDRRAADGSYG--GATGNSENETSGRPVGQNAYEDGYGVPQGH-GPPPSATTAGVVGAGP 288
+ + A+G+ G GA G P G E G P+G GPP S G G
Sbjct: 780 IGEKGAEGTAGNDGARGLPGPLGPPGPAGPTG-EKGEPGPRGLVGPPGSRGNPGSRGENG 838
Query: 289 NTSTSAYAATQS--GTP-MRAAYDIPRGPGYEASKGP-GYDASKAPSYDPTKGPSYDPAK 344
T +A Q G P ++ P G S GP G S P + P P +
Sbjct: 839 PTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGP-HGPHGVPGLKGGR 897
Query: 345 GPGYDP--TKGPGYDAQKGSNYDAQR-GPNYDIHRGPSYDPQR----GLGYDM-QRGPNY 396
G P T PG + G A GP GP+ +P + GL D G
Sbjct: 898 GTQGPPGATGFPGSAGRVGPPGPAGAPGP-----AGPAGEPGKEGPPGLRGDPGSHGRVG 952
Query: 397 DM-QRGP-GYETQRV-PGYDVQRGPVYEAQRAPSYIP-QRG-PGYDLQRGQ-GYDMRRAP 450
D GP G + PG D Q GP + P+ QRG G QRG+ G P
Sbjct: 953 DRGPAGPPGSPGDKGDPGEDGQPGP--DGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGP 1010
Query: 451 SYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGS-GQP-RGGNPARR 504
+ P + G GA P G V PP +N P G P +G+ G P R G R
Sbjct: 1011 AGTPGK-VGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGER 1065
>UNIPROTKB|B4DLD3 [details] [associations]
symbol:SS18 "cDNA FLJ58120, highly similar to SSXT protein"
species:9606 "Homo sapiens" [GO:0000226 "microtubule cytoskeleton
organization" evidence=IEA] [GO:0000902 "cell morphogenesis"
evidence=IEA] [GO:0005881 "cytoplasmic microtubule" evidence=IEA]
[GO:0007243 "intracellular protein kinase cascade" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0048013 "ephrin
receptor signaling pathway" evidence=IEA] GO:GO:0000226
GO:GO:0042493 GO:GO:0007243 GO:GO:0000902 GO:GO:0048013
GO:GO:0005881 HOVERGEN:HBG003892 InterPro:IPR007726
PANTHER:PTHR23107 Pfam:PF05030 UniGene:Hs.129261 EMBL:AC091021
HGNC:HGNC:11340 ChiTaRS:SS18 EMBL:AK296949 IPI:IPI01011245
STRING:B4DLD3 Ensembl:ENST00000542420 Uniprot:B4DLD3
Length = 395
Score = 116 (45.9 bits), Expect = 0.00087, P = 0.00087
Identities = 66/236 (27%), Positives = 88/236 (37%)
Query: 239 GSYGGATGNSENETSGRPVGQNAYEDGYGVPQG---H--GPPPSATTAGVVGAGPNT--- 290
G+YG S G + Q Y +PQG H G P G V G +
Sbjct: 165 GNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQ 224
Query: 291 -STSAYAATQSGTPMR-AAYDIPRGPGYE-ASKGP--GYDASKAPSYDPTKG---PSYDP 342
Y Q G P + + + G Y +GP G + P G PSY P
Sbjct: 225 RQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQPSY-P 283
Query: 343 AKGPGYD-PTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRG 401
+G YD P + +G N +Q G D ++GP PQ+G Q+ P G
Sbjct: 284 EQG--YDRPYEDSSQHYYEGGN--SQYGQQQDAYQGPP--PQQGYPPQQQQYPGQQGYPG 337
Query: 402 P--GY-ETQRVPGYDVQRGPVYEAQRAPSYIP-QRGPGYD-LQRGQGYDMRRAPSY 452
GY +Q PG P + Q+ Y P Q GP QR GYD + +Y
Sbjct: 338 QQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNY 393
>UNIPROTKB|J9P0I3 [details] [associations]
symbol:ZNF768 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] Pfam:PF00096 InterPro:IPR007087
InterPro:IPR013087 InterPro:IPR015880 PROSITE:PS00028
PROSITE:PS50157 SMART:SM00355 GO:GO:0008270 GO:GO:0003676
GO:GO:0005622 Gene3D:3.30.160.60 GeneTree:ENSGT00700000104520
KO:K09228 CTD:79724 OMA:SRYESQN EMBL:AAEX03004391
RefSeq:XP_547025.2 Ensembl:ENSCAFT00000045233 GeneID:489906
KEGG:cfa:489906 Uniprot:J9P0I3
Length = 554
Score = 118 (46.6 bits), Expect = 0.00089, P = 0.00089
Identities = 27/71 (38%), Positives = 42/71 (59%)
Query: 303 PMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQ--- 359
P Y+ P+ PGYE + PGY+ K+P Y+P K P Y+P + PGY+ ++ PGY+ Q
Sbjct: 116 PQSPRYE-PQSPGYEP-RSPGYEP-KSPGYEP-KSPGYEP-RSPGYE-SQSPGYEPQNPE 169
Query: 360 ---KGSNYDAQ 367
+ ++AQ
Sbjct: 170 FKTQSPEFEAQ 180
>UNIPROTKB|E1BYQ6 [details] [associations]
symbol:TPR "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006606 "protein import into nucleus" evidence=IEA]
[GO:0000776 "kinetochore" evidence=IEA] [GO:0005643 "nuclear pore"
evidence=IEA] [GO:0007094 "mitotic spindle assembly checkpoint"
evidence=IEA] [GO:0031965 "nuclear membrane" evidence=IEA]
InterPro:IPR012929 Pfam:PF07926 GO:GO:0000776 GO:GO:0007094
GO:GO:0031965 GO:GO:0005643 GO:GO:0006606 KO:K09291
GeneTree:ENSGT00700000104019 CTD:7175 OMA:RFIRREK EMBL:AADN02061595
IPI:IPI00591857 RefSeq:XP_422300.2 UniGene:Gga.14251
Ensembl:ENSGALT00000008185 GeneID:424457 KEGG:gga:424457
NextBio:20826784 Uniprot:E1BYQ6
Length = 2368
Score = 119 (46.9 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 36/179 (20%), Positives = 83/179 (46%)
Query: 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQM 108
+++ +K A+ +Q+++ E RL A L +Q+ LQ L ++ +++E+E
Sbjct: 1359 KLLSEKEANTK-RIQQMSEETGRLKAEIARTTASLTTSQNLLQNLKDEVAKIRTEKETLQ 1417
Query: 109 RNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVH-QLTQDLQRAHTDV 167
+ L K+A ++ ++KT VK ++ KT+ + L ++++A+ Q + Q V
Sbjct: 1418 KELDAKVADIQEKVKTITQVKKIGRRYKTQYEELKAQHDKMVAEAATQSFVEQQEEQVSV 1477
Query: 168 QQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 226
Q++ L L + E +K + + +++ + +E+ + R +L
Sbjct: 1478 QEVQELKDSLSQAEGKTKTLENQVENLQKTVAEKETEARNLQEQISQLQSELARFRQDL 1536
Score = 57 (25.1 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 26/103 (25%), Positives = 37/103 (35%)
Query: 243 GATGNSENETSGRPVGQNAYE--DGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQ- 299
G G+ NE +G G + YE D G G P T +G G + +A +
Sbjct: 1986 GDEGDDSNEGTGSADGNDGYEADDAEGAD---GTDPGTETEESLGGGESNQRAADSQNSC 2042
Query: 300 SGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDP 342
G+ A P E P AS+ + P + P P
Sbjct: 2043 EGSTSTAESTFPHESSREQQ--PS-SASERQAPRPPQSPRRPP 2082
>WB|WBGene00000653 [details] [associations]
symbol:col-77 species:6239 "Caenorhabditis elegans"
[GO:0042302 "structural constituent of cuticle" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] InterPro:IPR002486
Pfam:PF01484 SMART:SM01088 InterPro:IPR008160 Pfam:PF01391
EMBL:Z66498 GO:GO:0042302 HOGENOM:HOG000085656
GeneTree:ENSGT00610000086159 PIR:T23801 RefSeq:NP_495759.1
ProteinModelPortal:Q21562 DIP:DIP-26119N MINT:MINT-1050309
STRING:Q21562 EnsemblMetazoa:M195.1 GeneID:174336
KEGG:cel:CELE_M195.1 UCSC:M195.1 CTD:174336 WormBase:M195.1
eggNOG:NOG315089 InParanoid:Q21562 OMA:IAFFGIC NextBio:883606
Uniprot:Q21562
Length = 304
Score = 114 (45.2 bits), Expect = 0.00090, P = 0.00090
Identities = 71/238 (29%), Positives = 87/238 (36%)
Query: 265 GYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRG-PGYEASKGPG 323
GYG P + + + G G S + A GTP D G PG + G
Sbjct: 85 GYGAPAEYSTDAAVSAGGSEAGGQCCSCGSGPAGPPGTPGEDGRDGNDGQPGPDGQPGSD 144
Query: 324 YDASKAPSYDPTKGPSYD-PAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDP 382
A P+ D +D PA PG GP KG+ +A P D G P
Sbjct: 145 APAEAIPTADDF---CFDCPAGPPGPAGNAGP-----KGAPGNAG-APGNDGQAGAPGAP 195
Query: 383 QRGLGYDMQRGP-NYDMQRG-PGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQR 440
G D +GP D G PG + Q PG V+ V P PQ PG D Q
Sbjct: 196 ----GNDGPQGPPGQDGAAGQPGPDGQ--PGV-VEEVAVPAGPPGPPG-PQGAPGTDGQP 247
Query: 441 GQ-GYDMRRAPSYDPSRGTGFDGAP--RGAA-PHGQVPPPLNNVPYGSATPPARSGSG 494
G G + P P+ G DGAP GAA G+ P PP R+ G
Sbjct: 248 GSAGQPGQDGPQ-GPAGDAGTDGAPGQAGAAGEQGEAGQPGEGGGCDHCPPP-RTAPG 303
>UNIPROTKB|Q15532 [details] [associations]
symbol:SS18 "Protein SSXT" species:9606 "Homo sapiens"
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0000226 "microtubule cytoskeleton organization" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0005881
"cytoplasmic microtubule" evidence=IEA] [GO:0007243 "intracellular
protein kinase cascade" evidence=IEA] [GO:0042493 "response to
drug" evidence=IEA] [GO:0048013 "ephrin receptor signaling pathway"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] GO:GO:0005634 GO:GO:0000226
GO:GO:0042493 GO:GO:0045944 GO:GO:0007243 GO:GO:0006351
EMBL:CH471088 GO:GO:0000902 Orphanet:3273 GO:GO:0048013
GO:GO:0005881 GO:GO:0030374 HOVERGEN:HBG003892 InterPro:IPR007726
PANTHER:PTHR23107 Pfam:PF05030 UniGene:Hs.129261 EMBL:X79200
EMBL:S79894 EMBL:X79201 EMBL:AF343880 EMBL:EF445031 EMBL:BC096223
IPI:IPI00452919 IPI:IPI00940186 PIR:S46269 RefSeq:NP_001007560.1
RefSeq:NP_005628.2 ProteinModelPortal:Q15532 IntAct:Q15532
STRING:Q15532 PhosphoSite:Q15532 DMDM:20141795 PaxDb:Q15532
PRIDE:Q15532 DNASU:6760 Ensembl:ENST00000269137
Ensembl:ENST00000415083 GeneID:6760 KEGG:hsa:6760 UCSC:uc002kvm.3
CTD:6760 GeneCards:GC18M023596 HGNC:HGNC:11340 MIM:600192
neXtProt:NX_Q15532 PharmGKB:PA36164 eggNOG:NOG274014
InParanoid:Q15532 KO:K15623 OrthoDB:EOG4RFKTH PhylomeDB:Q15532
ChiTaRS:SS18 GenomeRNAi:6760 NextBio:26388 ArrayExpress:Q15532
Bgee:Q15532 CleanEx:HS_SS18 Genevestigator:Q15532
GermOnline:ENSG00000141380 Uniprot:Q15532
Length = 418
Score = 116 (45.9 bits), Expect = 0.00096, P = 0.00096
Identities = 66/236 (27%), Positives = 88/236 (37%)
Query: 239 GSYGGATGNSENETSGRPVGQNAYEDGYGVPQG---H--GPPPSATTAGVVGAGPNT--- 290
G+YG S G + Q Y +PQG H G P G V G +
Sbjct: 188 GNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQ 247
Query: 291 -STSAYAATQSGTPMR-AAYDIPRGPGYE-ASKGP--GYDASKAPSYDPTKG---PSYDP 342
Y Q G P + + + G Y +GP G + P G PSY P
Sbjct: 248 RQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQPSY-P 306
Query: 343 AKGPGYD-PTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRG 401
+G YD P + +G N +Q G D ++GP PQ+G Q+ P G
Sbjct: 307 EQG--YDRPYEDSSQHYYEGGN--SQYGQQQDAYQGPP--PQQGYPPQQQQYPGQQGYPG 360
Query: 402 P--GY-ETQRVPGYDVQRGPVYEAQRAPSYIP-QRGPGYD-LQRGQGYDMRRAPSY 452
GY +Q PG P + Q+ Y P Q GP QR GYD + +Y
Sbjct: 361 QQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNY 416
>WB|WBGene00000627 [details] [associations]
symbol:col-50 species:6239 "Caenorhabditis elegans"
[GO:0042302 "structural constituent of cuticle" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] InterPro:IPR002486
Pfam:PF01484 SMART:SM01088 InterPro:IPR008160 Pfam:PF01391
GO:GO:0042302 HOGENOM:HOG000085656 GeneTree:ENSGT00530000064217
EMBL:FO080999 PIR:T15142 RefSeq:NP_491194.1 UniGene:Cel.16665
ProteinModelPortal:O01662 EnsemblMetazoa:T28F2.6 GeneID:189050
KEGG:cel:CELE_T28F2.6 UCSC:T28F2.6 CTD:189050 WormBase:T28F2.6
eggNOG:NOG279371 InParanoid:O01662 OMA:AGNCITC NextBio:941028
Uniprot:O01662
Length = 418
Score = 116 (45.9 bits), Expect = 0.00096, P = 0.00096
Identities = 89/355 (25%), Positives = 124/355 (34%)
Query: 172 ALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 231
+++ +L+S ++ ++++ ND + V + + + E+L E +
Sbjct: 29 SIIGDLQSFETDFVDDMSAFKHKA---NDAWSQMMVARR----VESPTERLAFEGLFG-R 80
Query: 232 VDRRAADG-SYGGATGNSEN--ETSGRPVGQNAYEDGYGVPQGH-GPPPSATTAGVVG-- 285
V R+ A G + AT E E +G G G P G GPP A G G
Sbjct: 81 VKRQYAGGDAAAAATPAKEGYAEGAGGGGGCQCAAQASGCPAGPPGPPGEAGADGEPGEA 140
Query: 286 -----AGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKA-PSYDPT---- 335
AG S YA +G + P PG + + GP A A P +
Sbjct: 141 GQDGAAGEAGSADTYAGA-AGNCITCPAGPPGPPGPDGNAGPAGPAGAAGPDGEGAGYAE 199
Query: 336 KGPSYDPAKGPGYDPTKG-PGYDAQKGSNYDAQRG-PNYDIHRGPSYDPQRGLGYDMQRG 393
GP+ PA PG D G PG D Q G+ P GP P G D
Sbjct: 200 PGPA-GPAGPPGPDGQPGAPGPDGQPGAGGTTSTNQPGPPGPAGPP-GPAGPAGEDAYAQ 257
Query: 394 PNYDMQRGP----GYETQR-------VPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQ 442
P+ GP G + + PG D GP +A P G G + G
Sbjct: 258 PSPAGTPGPPGPPGKDGEAGPDGPAGAPGTDGAPGP--DAAYCPCPPRTLGAGAYPEGGD 315
Query: 443 GYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNV-PYGSATPPARSGSGQP 496
A YD G + AP AA P P P G A +G+ P
Sbjct: 316 AAAAAPAGGYDGGAGAAPEAAPAAAAAPQPAPAPAAAAAPAGGYQGGAAAGAAAP 370
>MGI|MGI:3040693 [details] [associations]
symbol:Zmiz1 "zinc finger, MIZ-type containing 1"
species:10090 "Mus musculus" [GO:0001570 "vasculogenesis"
evidence=IMP] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003007 "heart morphogenesis" evidence=IMP]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0007296 "vitellogenesis"
evidence=IMP] [GO:0007569 "cell aging" evidence=IDA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0048146 "positive
regulation of fibroblast proliferation" evidence=IMP] [GO:0048589
"developmental growth" evidence=IMP] [GO:0048844 "artery
morphogenesis" evidence=IMP] InterPro:IPR004181 Pfam:PF02891
PROSITE:PS51044 MGI:MGI:3040693 GO:GO:0005737 GO:GO:0046872
GO:GO:0016607 GO:GO:0003007 GO:GO:0008270 GO:GO:0001701
GO:GO:0045944 GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0048589 GO:GO:0001570 GO:GO:0048146 GO:GO:0048844
GO:GO:0007569 GO:GO:0007296 GeneTree:ENSGT00550000074410 CTD:57178
eggNOG:NOG237400 HOGENOM:HOG000253014 HOVERGEN:HBG056252
OMA:MNQYGPM OrthoDB:EOG45MN70 ChiTaRS:ZMIZ1 EMBL:BC057691
EMBL:BC058646 EMBL:BC065120 EMBL:AK054366 IPI:IPI00226072
IPI:IPI00480418 RefSeq:NP_899031.2 UniGene:Mm.227484
UniGene:Mm.486339 UniGene:Mm.489608 ProteinModelPortal:Q6P1E1
SMR:Q6P1E1 IntAct:Q6P1E1 STRING:Q6P1E1 PhosphoSite:Q6P1E1
PaxDb:Q6P1E1 PRIDE:Q6P1E1 Ensembl:ENSMUST00000007961
Ensembl:ENSMUST00000162645 GeneID:328365 KEGG:mmu:328365
UCSC:uc007srn.1 UCSC:uc007sro.1 InParanoid:Q6P1E1 NextBio:398259
Bgee:Q6P1E1 CleanEx:MM_ZMIZ1 Genevestigator:Q6P1E1
GermOnline:ENSMUSG00000007817 Uniprot:Q6P1E1
Length = 1072
Score = 121 (47.7 bits), Expect = 0.00097, P = 0.00097
Identities = 65/232 (28%), Positives = 84/232 (36%)
Query: 287 GPNTSTSAYAATQSGTPMRAAYDIPRGPG-YEASKGP-GYDASKAPSYDPTKGP--SYDP 342
GP S+ TQ+ PRGP S P G A PS GP +
Sbjct: 318 GPVCSSFQMGPTQAYNSQFMNQPGPRGPASMGGSLNPAGMAAGMTPS--GMSGPPMGMNQ 375
Query: 343 AKGPGYDP--TKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQR 400
+ PG P T G Q Q P I R +P G + Q GPN
Sbjct: 376 PRPPGISPFGTHGQRMPQQTYPGPRPQSLPIQSIKRPYPGEPNYG---NQQYGPNSQFPT 432
Query: 401 GPG-YETQRVPGYDVQRGPVYEAQRAPSYIPQRG--PGYDLQRGQGYDMRRAPSYDP--S 455
PG Y T P P Y QR PS P G P + GQ Y + + S
Sbjct: 433 QPGQYPTPNPPR--PLTSPNYPGQRMPSQ-PSTGQYPPPTVNMGQYYKPEQFNGQNNTFS 489
Query: 456 RGTGFDGAPRGAAPHGQVPPPLNNVPY----GSATPPARSGSGQPRGGNPAR 503
G+ + +G+ P P+ N P+ G+ TPP GS P +P++
Sbjct: 490 SGSSYSSYSQGSVNRPPRPVPVANYPHSPVPGNPTPPMTPGSSIPPYLSPSQ 541
>UNIPROTKB|F1RLL9 [details] [associations]
symbol:COL4A2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0031012 "extracellular matrix" evidence=IDA]
[GO:0071560 "cellular response to transforming growth factor beta
stimulus" evidence=IEA] [GO:0016525 "negative regulation of
angiogenesis" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005587 "collagen type IV"
evidence=IEA] [GO:0005201 "extracellular matrix structural
constituent" evidence=IEA] InterPro:IPR001442 Pfam:PF01413
PROSITE:PS51403 SMART:SM00111 GO:GO:0071560 InterPro:IPR016187
SUPFAM:SSF56436 GO:GO:0006351 InterPro:IPR008160 Pfam:PF01391
GO:GO:0016525 GO:GO:0005201 GO:GO:0005587 Gene3D:2.170.240.10
GeneTree:ENSGT00690000101772 OMA:TTIPEQN EMBL:CT954227
EMBL:CU041289 Ensembl:ENSSSCT00000010463 Uniprot:F1RLL9
Length = 1654
Score = 123 (48.4 bits), Expect = 0.00097, P = 0.00097
Identities = 81/291 (27%), Positives = 106/291 (36%)
Query: 230 PNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGH-GPPPSATTAGVVG--- 285
P D GG G ++ VG Y G P G GPP G G
Sbjct: 55 PGADGIPGHPGQGGPRGRPGSDGCNGTVGDTGYAGPVG-PDGFLGPPGPQGPKGQKGEPY 113
Query: 286 AGPNTSTSAYAATQSGTPMRAAYDIPRG-PGYEASKGPGYDASKAPSYDPTKGPSYDPAK 344
A Y + G P + P G PG GP AP GP P
Sbjct: 114 ALSREDRDKYRG-EPGEPGLVGFQGPPGRPGPVGQMGP----VGAPGRPGPPGPP-GPKG 167
Query: 345 GPGYDPTKGPGYDAQKGSNYDA-QRGPN---YDIHRGPSYDPQRGLGY-DMQRGPNYDMQ 399
PG +G G+ +KG D Q GPN D H P P R Y D +G +
Sbjct: 168 QPG---NRGLGFYGEKGEKGDVGQPGPNGIPSDNHH-PIIGPTRETIYLDQYKGEK-GSE 222
Query: 400 RGPGYETQRVPGYDVQRGPVYEAQRA-PSYIPQRG-PGYDLQRG-QGYDMRRAPS-YDPS 455
PG + + G + G + R P + ++G PG RG GY+ P Y
Sbjct: 223 GEPGRKGISLKGEEGIMG--FSGSRGVPGFDGEKGSPGQKGSRGLDGYE---GPDGYPGP 277
Query: 456 RGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGS-GQP--RG--GNP 501
+G D P GA + P P ++ G+ P G+ G+P RG G+P
Sbjct: 278 KGERGDPGPPGAPAYS--PHP--SLAKGARGEPGFPGALGEPGARGEPGDP 324
>MGI|MGI:2147661 [details] [associations]
symbol:Vps37c "vacuolar protein sorting 37C (yeast)"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005768 "endosome" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0015031 "protein transport"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] MGI:MGI:2147661
GO:GO:0031902 GO:GO:0015031 InterPro:IPR009851 Pfam:PF07200
PROSITE:PS51314 KO:K12185 GeneTree:ENSGT00530000063123
HOGENOM:HOG000234744 HOVERGEN:HBG073355 CTD:55048 eggNOG:NOG311749
OMA:VERCQEQ OrthoDB:EOG4B2SZG EMBL:AK158833 EMBL:AK159309
EMBL:BC025865 IPI:IPI00153241 IPI:IPI00877200 RefSeq:NP_852068.1
UniGene:Mm.19091 ProteinModelPortal:Q8R105 IntAct:Q8R105
STRING:Q8R105 PhosphoSite:Q8R105 PaxDb:Q8R105 PRIDE:Q8R105
Ensembl:ENSMUST00000087951 GeneID:107305 KEGG:mmu:107305
UCSC:uc008gqr.1 UCSC:uc008gqs.1 InParanoid:Q8R105 NextBio:358674
Bgee:Q8R105 CleanEx:MM_VPS37C Genevestigator:Q8R105 Uniprot:Q8R105
Length = 352
Score = 90 (36.7 bits), Expect = 0.00099, Sum P(2) = 0.00099
Identities = 46/178 (25%), Positives = 60/178 (33%)
Query: 268 VPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPG-YDA 326
VP PPP T P + +P GP + + P +
Sbjct: 170 VPPKRPPPPRPVPQATPPETEEQPPQPSVVTPYPLPYSPSPGLPVGPTAQGALQPAPFPV 229
Query: 327 SKAPS-YDPTKGPSYDPAKGP----GYDPTKGPGYDAQKG--SNYDAQRGPNYDIHRGPS 379
PS Y GP P GP GY + Q G + + GP Y + G +
Sbjct: 230 VAQPSSYGGPLGPYPSPHPGPRAMVGYSWSPQRSGPPQPGYPTAPTSTSGPGYPLVGGRT 289
Query: 380 YDPQRGLGYDMQRGPNYDMQRGPGYETQ-RVPGYDVQRGPVYEAQRAPSYIPQRGPGY 436
P GY Q+ P P Y TQ ++PG+ Q P Q P Y P P Y
Sbjct: 290 PGP----GYP-QQSPYLPSGNKPPYPTQPQLPGFPGQPQPPVPPQ--PPYPPGTTPSY 340
Score = 68 (29.0 bits), Expect = 0.00099, Sum P(2) = 0.00099
Identities = 20/81 (24%), Positives = 42/81 (51%)
Query: 43 DMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS 102
+M PE + ++A + E+Q L E + AT+ +L ++ Q L+I + S
Sbjct: 14 EMQNDPEAIA-RLALESPEVQDLQLEREMALATNRSLAEQNLEFQGPLEISRSNL----S 68
Query: 103 ERELQMRNLTEKIAKMEAELK 123
++ ++R L E+ + +A+L+
Sbjct: 69 DKYQELRKLVERCQEQKAKLE 89
>UNIPROTKB|P02465 [details] [associations]
symbol:COL1A2 "Collagen alpha-2(I) chain" species:9913 "Bos
taurus" [GO:0071230 "cellular response to amino acid stimulus"
evidence=IEA] [GO:0070208 "protein heterotrimerization"
evidence=IEA] [GO:0048407 "platelet-derived growth factor binding"
evidence=IEA] [GO:0046332 "SMAD binding" evidence=IEA] [GO:0043589
"skin morphogenesis" evidence=IEA] [GO:0042802 "identical protein
binding" evidence=IEA] [GO:0030674 "protein binding, bridging"
evidence=IEA] [GO:0030199 "collagen fibril organization"
evidence=IEA] [GO:0008217 "regulation of blood pressure"
evidence=IEA] [GO:0007266 "Rho protein signal transduction"
evidence=IEA] [GO:0007179 "transforming growth factor beta receptor
signaling pathway" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0005584 "collagen type I" evidence=IEA]
[GO:0001568 "blood vessel development" evidence=IEA] [GO:0001501
"skeletal system development" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005201 "extracellular matrix structural
constituent" evidence=IEA] InterPro:IPR000885 Pfam:PF01410
ProDom:PD002078 PROSITE:PS51461 SMART:SM00038 GO:GO:0005615
GO:GO:0046872 GO:GO:0030199 GO:GO:0001501 GO:GO:0008217
GO:GO:0007179 GO:GO:0007266 GO:GO:0070208 InterPro:IPR008160
Pfam:PF01391 eggNOG:NOG12793 GO:GO:0001568 GO:GO:0071230
GO:GO:0005201 GO:GO:0043589 GeneTree:ENSGT00660000095287
HOGENOM:HOG000085654 HOVERGEN:HBG004933 KO:K06236 GO:GO:0005584
EMBL:AB008683 EMBL:BC149095 IPI:IPI00708244 PIR:A90596
RefSeq:NP_776945.1 UniGene:Bt.53485 IntAct:P02465 MINT:MINT-1346303
STRING:P02465 Allergome:3550 Allergome:896 PRIDE:P02465
Ensembl:ENSBTAT00000033863 GeneID:282188 KEGG:bta:282188 CTD:1278
InParanoid:P02465 OMA:TGPIGSA OrthoDB:EOG412M65 NextBio:20806016
PMAP-CutDB:P02465 Uniprot:P02465
Length = 1364
Score = 122 (48.0 bits), Expect = 0.0010, P = 0.0010
Identities = 78/267 (29%), Positives = 94/267 (35%)
Query: 243 GATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAAT--QS 300
GA G N + P G + G G GPP G G +
Sbjct: 518 GAPGPDGNNGAQGPPGLQGVQGGKGEQGPAGPPGFQGLPGPAGTAGEAGKPGERGIPGEF 577
Query: 301 GTPMRAAYDIPRGP-GYEASKGP-GYDASKAPSYDPTKGPSYDPAKG-PGYDPTKGPGYD 357
G P A RGP G + GP G S+ PS P GP D KG PG PG
Sbjct: 578 GLPGPAGARGERGPPGESGAAGPTGPIGSRGPSGPP--GP--DGNKGEPGV--VGAPGTA 631
Query: 358 AQKG-SNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRG-PGYETQRVP-GYDV 414
G S +RG I G + GL D+ P D RG PG P G +
Sbjct: 632 GPSGPSGLPGERGAA-GIPGGKGEKGETGLRGDIG-SPGRDGARGAPGAIGAPGPAGANG 689
Query: 415 QRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAP--RGA-APHG 471
RG A A P+ PG +RG+ P+ G GA RG P G
Sbjct: 690 DRGEAGPAGPAGPAGPRGSPG---ERGEVGPAGPNGFAGPAGAAGQPGAKGERGTKGPKG 746
Query: 472 QVPPPLNNVPYGSATPPARSGSGQPRG 498
+ P P G+A P +G P G
Sbjct: 747 ENGPVGPTGPVGAAGPSGPNGPPGPAG 773
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.311 0.132 0.391 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 504 485 0.00081 119 3 11 23 0.36 35
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 241
No. of states in DFA: 586 (62 KB)
Total size of DFA: 256 KB (2132 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 58.90u 0.09s 58.99t Elapsed: 00:00:04
Total cpu time: 59.00u 0.10s 59.10t Elapsed: 00:00:04
Start: Sat May 11 02:18:22 2013 End: Sat May 11 02:18:26 2013
WARNINGS ISSUED: 1