Query 010679
Match_columns 504
No_of_seqs 313 out of 1254
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 03:19:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010679.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010679hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11637 AmiB activator; Provi 99.1 8.3E-08 1.8E-12 103.0 27.4 75 49-123 43-120 (428)
2 PRK11637 AmiB activator; Provi 99.0 1.2E-07 2.6E-12 101.7 26.6 78 46-123 47-127 (428)
3 PF09726 Macoilin: Transmembra 99.0 1.3E-07 2.9E-12 106.6 27.2 183 49-231 421-657 (697)
4 COG4372 Uncharacterized protei 99.0 1.3E-07 2.8E-12 97.5 23.7 50 182-231 231-280 (499)
5 TIGR02169 SMC_prok_A chromosom 98.9 3.5E-07 7.7E-12 108.2 27.6 47 51-97 292-338 (1164)
6 TIGR02169 SMC_prok_A chromosom 98.9 3.8E-07 8.2E-12 108.0 27.3 12 214-225 480-491 (1164)
7 PF00038 Filament: Intermediat 98.9 1.2E-06 2.7E-11 89.7 27.0 117 48-164 6-137 (312)
8 PF07888 CALCOCO1: Calcium bin 98.9 6.3E-07 1.4E-11 97.5 25.8 52 48-99 138-189 (546)
9 TIGR02168 SMC_prok_B chromosom 98.9 5.5E-07 1.2E-11 106.3 27.6 31 49-79 701-731 (1179)
10 COG4942 Membrane-bound metallo 98.9 2.9E-06 6.2E-11 89.8 29.8 72 50-121 35-109 (420)
11 KOG0977 Nuclear envelope prote 98.9 4.8E-07 1E-11 98.4 24.6 76 48-123 44-130 (546)
12 PF07888 CALCOCO1: Calcium bin 98.8 1.2E-06 2.7E-11 95.3 26.2 51 46-96 143-193 (546)
13 TIGR02168 SMC_prok_B chromosom 98.8 1.3E-06 2.7E-11 103.3 27.4 42 49-90 673-714 (1179)
14 COG4942 Membrane-bound metallo 98.8 3E-06 6.4E-11 89.7 26.7 51 48-98 40-90 (420)
15 PHA02562 46 endonuclease subun 98.8 2.3E-06 4.9E-11 94.3 25.7 15 27-42 130-144 (562)
16 PHA02562 46 endonuclease subun 98.7 2.1E-06 4.5E-11 94.6 24.7 41 185-225 361-401 (562)
17 KOG0250 DNA repair protein RAD 98.7 2.5E-06 5.3E-11 98.0 25.5 103 129-231 350-464 (1074)
18 KOG0996 Structural maintenance 98.7 1.6E-06 3.5E-11 99.6 23.8 58 175-232 542-599 (1293)
19 KOG0964 Structural maintenance 98.7 2.3E-06 5E-11 96.7 23.6 177 50-229 696-894 (1200)
20 KOG0977 Nuclear envelope prote 98.7 2.9E-06 6.3E-11 92.4 23.7 104 61-164 107-217 (546)
21 PF00261 Tropomyosin: Tropomyo 98.7 3E-06 6.4E-11 84.2 21.6 49 49-97 4-52 (237)
22 KOG0996 Structural maintenance 98.7 2.9E-06 6.3E-11 97.5 23.5 36 61-96 385-420 (1293)
23 COG1196 Smc Chromosome segrega 98.7 4.2E-06 9.2E-11 100.2 26.2 16 213-228 477-492 (1163)
24 COG4372 Uncharacterized protei 98.7 1.9E-05 4.2E-10 81.8 26.7 190 36-228 71-284 (499)
25 KOG0933 Structural maintenance 98.7 3.4E-06 7.3E-11 95.7 23.0 43 195-237 898-940 (1174)
26 COG1196 Smc Chromosome segrega 98.7 6E-06 1.3E-10 98.9 26.5 53 176-228 864-916 (1163)
27 PRK02224 chromosome segregatio 98.7 4.9E-06 1.1E-10 96.7 25.1 13 26-39 128-140 (880)
28 KOG0161 Myosin class II heavy 98.6 7.3E-06 1.6E-10 100.0 26.3 29 200-228 1115-1143(1930)
29 PRK03918 chromosome segregatio 98.6 1E-05 2.2E-10 93.8 26.8 37 107-143 215-251 (880)
30 PF00261 Tropomyosin: Tropomyo 98.6 1.7E-05 3.6E-10 78.9 24.6 179 49-227 11-228 (237)
31 KOG0250 DNA repair protein RAD 98.6 1E-05 2.2E-10 93.0 25.8 38 128-165 335-372 (1074)
32 PF14662 CCDC155: Coiled-coil 98.6 2.9E-05 6.3E-10 74.1 24.7 33 197-229 152-184 (193)
33 TIGR00606 rad50 rad50. This fa 98.6 5.9E-06 1.3E-10 100.0 25.1 56 106-161 799-860 (1311)
34 KOG0971 Microtubule-associated 98.6 1.5E-05 3.3E-10 89.5 26.0 37 128-164 401-437 (1243)
35 PRK02224 chromosome segregatio 98.6 1.2E-05 2.7E-10 93.3 26.8 34 195-228 362-395 (880)
36 KOG0161 Myosin class II heavy 98.6 1.1E-05 2.5E-10 98.5 27.0 47 173-219 1095-1141(1930)
37 KOG0971 Microtubule-associated 98.6 1.3E-05 2.8E-10 90.1 25.1 19 43-61 228-246 (1243)
38 KOG0933 Structural maintenance 98.6 1.4E-05 3E-10 90.9 25.4 54 46-99 677-733 (1174)
39 PF05701 WEMBL: Weak chloropla 98.6 2.3E-05 5E-10 86.4 26.2 40 127-166 313-352 (522)
40 COG1579 Zn-ribbon protein, pos 98.6 1.7E-05 3.6E-10 78.7 22.4 18 105-122 65-82 (239)
41 COG1579 Zn-ribbon protein, pos 98.6 2.6E-05 5.6E-10 77.4 23.7 59 62-124 12-70 (239)
42 KOG1029 Endocytic adaptor prot 98.6 1.3E-05 2.8E-10 88.8 23.6 28 177-204 551-578 (1118)
43 PRK03918 chromosome segregatio 98.6 2.2E-05 4.7E-10 91.2 27.1 47 106-152 221-267 (880)
44 KOG1029 Endocytic adaptor prot 98.5 1.2E-05 2.6E-10 89.0 22.3 21 103-123 441-461 (1118)
45 PRK09039 hypothetical protein; 98.5 1.2E-05 2.6E-10 84.2 21.5 57 170-226 139-199 (343)
46 PF14662 CCDC155: Coiled-coil 98.5 0.0001 2.2E-09 70.4 24.2 33 196-228 158-190 (193)
47 COG3883 Uncharacterized protei 98.5 0.00014 2.9E-09 73.1 26.3 52 48-99 33-84 (265)
48 PF00038 Filament: Intermediat 98.5 0.00015 3.2E-09 74.4 27.6 42 49-90 50-91 (312)
49 KOG0995 Centromere-associated 98.5 2.4E-05 5.2E-10 84.8 22.4 120 107-226 267-390 (581)
50 PRK04863 mukB cell division pr 98.5 4.9E-05 1.1E-09 92.3 27.5 43 57-99 290-332 (1486)
51 KOG2991 Splicing regulator [RN 98.5 0.00012 2.6E-09 72.4 25.1 22 102-123 139-160 (330)
52 PRK04863 mukB cell division pr 98.5 3.7E-05 8E-10 93.3 25.9 36 54-89 294-329 (1486)
53 PF05701 WEMBL: Weak chloropla 98.5 7.7E-05 1.7E-09 82.3 26.3 20 206-225 368-387 (522)
54 PRK09039 hypothetical protein; 98.4 5E-05 1.1E-09 79.6 23.4 49 50-98 43-91 (343)
55 PF09726 Macoilin: Transmembra 98.4 2.5E-05 5.5E-10 88.4 22.7 20 149-168 543-562 (697)
56 COG1340 Uncharacterized archae 98.4 0.00018 4E-09 73.0 26.4 82 132-213 160-245 (294)
57 KOG0999 Microtubule-associated 98.4 0.00013 2.8E-09 78.7 25.9 60 174-233 193-259 (772)
58 TIGR03185 DNA_S_dndD DNA sulfu 98.4 7.5E-05 1.6E-09 84.4 25.6 45 51-95 207-251 (650)
59 COG1340 Uncharacterized archae 98.4 0.00016 3.4E-09 73.6 24.4 48 178-225 203-250 (294)
60 TIGR01000 bacteriocin_acc bact 98.4 0.00012 2.6E-09 79.3 25.4 33 46-78 90-122 (457)
61 PF08317 Spc7: Spc7 kinetochor 98.4 2.7E-05 5.9E-10 80.9 19.3 23 108-130 179-201 (325)
62 KOG0976 Rho/Rac1-interacting s 98.4 0.00012 2.7E-09 81.5 24.5 37 54-90 107-143 (1265)
63 KOG4643 Uncharacterized coiled 98.3 3.2E-05 6.9E-10 88.0 20.0 159 49-209 173-335 (1195)
64 PF04849 HAP1_N: HAP1 N-termin 98.3 0.00021 4.6E-09 73.1 24.2 170 63-232 86-305 (306)
65 PF05667 DUF812: Protein of un 98.3 8E-05 1.7E-09 83.0 22.8 50 50-99 318-367 (594)
66 KOG0995 Centromere-associated 98.3 0.0002 4.4E-09 77.9 24.9 48 50-97 225-275 (581)
67 KOG1003 Actin filament-coating 98.3 0.00026 5.6E-09 67.7 22.7 38 52-89 3-40 (205)
68 PF15070 GOLGA2L5: Putative go 98.3 0.00019 4.2E-09 80.3 25.6 47 52-98 21-67 (617)
69 PF12128 DUF3584: Protein of u 98.3 0.00017 3.6E-09 86.9 27.0 53 47-99 601-653 (1201)
70 KOG0979 Structural maintenance 98.3 0.00011 2.5E-09 83.9 23.8 124 42-165 155-297 (1072)
71 PF05667 DUF812: Protein of un 98.3 6.5E-05 1.4E-09 83.7 21.7 47 50-96 325-371 (594)
72 COG3883 Uncharacterized protei 98.3 0.00067 1.5E-08 68.2 26.7 74 49-126 27-100 (265)
73 KOG1999 RNA polymerase II tran 98.3 1E-05 2.2E-10 91.8 15.4 57 312-370 742-799 (1024)
74 COG5185 HEC1 Protein involved 98.3 0.0001 2.2E-09 78.1 21.5 95 132-226 332-426 (622)
75 PF09730 BicD: Microtubule-ass 98.3 0.00023 5.1E-09 80.4 25.5 107 127-233 80-186 (717)
76 KOG0994 Extracellular matrix g 98.3 0.00016 3.4E-09 83.2 24.0 52 180-231 1687-1738(1758)
77 PF12128 DUF3584: Protein of u 98.3 0.0002 4.4E-09 86.2 26.6 25 205-229 850-874 (1201)
78 PF08317 Spc7: Spc7 kinetochor 98.3 0.00037 8.1E-09 72.5 25.0 63 174-236 229-295 (325)
79 PF10174 Cast: RIM-binding pro 98.3 0.00036 7.9E-09 79.8 26.9 6 182-187 443-448 (775)
80 KOG4643 Uncharacterized coiled 98.3 0.00035 7.7E-09 79.8 26.1 45 51-95 413-457 (1195)
81 PRK01156 chromosome segregatio 98.3 0.00028 6E-09 82.5 26.6 11 46-56 159-169 (895)
82 KOG0980 Actin-binding protein 98.3 0.00031 6.7E-09 79.4 25.0 51 170-220 496-546 (980)
83 PRK04778 septation ring format 98.2 0.00026 5.6E-09 79.0 24.4 11 107-117 283-293 (569)
84 KOG0994 Extracellular matrix g 98.2 0.00043 9.3E-09 79.8 25.8 55 174-228 1688-1742(1758)
85 TIGR03007 pepcterm_ChnLen poly 98.2 0.0002 4.3E-09 78.2 22.9 28 69-96 163-190 (498)
86 PF12718 Tropomyosin_1: Tropom 98.2 0.00025 5.4E-09 65.4 20.0 17 148-164 77-93 (143)
87 PF15066 CAGE1: Cancer-associa 98.2 0.00046 9.9E-09 73.3 24.2 38 58-95 315-352 (527)
88 PF15070 GOLGA2L5: Putative go 98.2 0.00031 6.7E-09 78.7 24.5 23 204-226 238-260 (617)
89 PF15619 Lebercilin: Ciliary p 98.2 0.001 2.2E-08 64.5 24.7 22 206-227 167-188 (194)
90 COG5185 HEC1 Protein involved 98.2 0.00031 6.7E-09 74.6 22.6 105 124-228 331-435 (622)
91 smart00787 Spc7 Spc7 kinetocho 98.2 0.00062 1.3E-08 70.5 24.6 68 169-236 219-290 (312)
92 PF07926 TPR_MLP1_2: TPR/MLP1/ 98.2 0.0002 4.2E-09 65.1 18.6 89 111-205 40-128 (132)
93 PF15619 Lebercilin: Ciliary p 98.2 0.00095 2E-08 64.6 24.3 16 214-229 168-183 (194)
94 KOG0979 Structural maintenance 98.2 0.00025 5.5E-09 81.1 23.2 73 52-125 194-267 (1072)
95 PF09755 DUF2046: Uncharacteri 98.2 0.0023 5E-08 65.6 28.0 174 49-228 23-203 (310)
96 TIGR01843 type_I_hlyD type I s 98.2 0.00051 1.1E-08 72.6 24.4 27 203-229 246-272 (423)
97 KOG4674 Uncharacterized conser 98.2 0.00028 6E-09 85.6 24.4 119 47-165 1154-1285(1822)
98 KOG0964 Structural maintenance 98.2 0.0003 6.4E-09 80.2 23.1 37 195-231 459-495 (1200)
99 KOG0963 Transcription factor/C 98.2 0.0008 1.7E-08 73.9 25.8 100 130-229 235-343 (629)
100 PF05622 HOOK: HOOK protein; 98.2 3.4E-07 7.4E-12 104.2 0.0 68 163-230 351-418 (713)
101 TIGR02680 conserved hypothetic 98.2 0.00044 9.4E-09 84.2 26.2 30 48-77 751-780 (1353)
102 PF05010 TACC: Transforming ac 98.2 0.0028 6.2E-08 61.9 26.9 180 50-229 6-201 (207)
103 TIGR02680 conserved hypothetic 98.2 0.00054 1.2E-08 83.4 26.8 50 177-226 923-972 (1353)
104 KOG0612 Rho-associated, coiled 98.2 0.00021 4.6E-09 83.0 21.8 18 63-80 468-485 (1317)
105 TIGR01843 type_I_hlyD type I s 98.2 0.00041 9E-09 73.3 22.9 58 174-231 209-267 (423)
106 PF12718 Tropomyosin_1: Tropom 98.2 0.00036 7.8E-09 64.4 19.5 25 202-226 114-138 (143)
107 KOG4674 Uncharacterized conser 98.2 0.00058 1.3E-08 82.9 26.2 16 108-123 1309-1324(1822)
108 smart00787 Spc7 Spc7 kinetocho 98.1 0.00016 3.5E-09 74.8 18.8 25 108-132 174-198 (312)
109 KOG4593 Mitotic checkpoint pro 98.1 0.00092 2E-08 74.2 25.4 14 106-119 151-164 (716)
110 KOG0980 Actin-binding protein 98.1 0.00089 1.9E-08 75.8 25.5 21 177-197 496-516 (980)
111 PF06818 Fez1: Fez1; InterPro 98.1 0.0011 2.3E-08 64.2 22.9 53 174-226 144-200 (202)
112 PF06160 EzrA: Septation ring 98.1 0.0012 2.5E-08 73.7 26.6 183 49-231 104-334 (560)
113 TIGR03185 DNA_S_dndD DNA sulfu 98.1 0.0008 1.7E-08 76.2 25.5 49 178-226 424-472 (650)
114 PRK04778 septation ring format 98.1 0.00047 1E-08 76.9 23.1 33 194-226 474-506 (569)
115 KOG1003 Actin filament-coating 98.1 0.0017 3.6E-08 62.3 23.2 32 62-93 6-37 (205)
116 PF14915 CCDC144C: CCDC144C pr 98.1 0.0018 3.9E-08 65.8 24.6 100 131-230 138-241 (305)
117 TIGR01005 eps_transp_fam exopo 98.1 0.0005 1.1E-08 78.9 23.5 28 69-96 196-223 (754)
118 PF05010 TACC: Transforming ac 98.1 0.0038 8.2E-08 61.0 26.0 23 132-154 78-100 (207)
119 TIGR01000 bacteriocin_acc bact 98.1 0.0015 3.2E-08 70.9 25.4 23 48-70 99-121 (457)
120 KOG0982 Centrosomal protein Nu 98.1 0.0014 3E-08 69.1 23.6 51 49-99 218-268 (502)
121 PF15397 DUF4618: Domain of un 98.1 0.0039 8.6E-08 62.6 26.0 21 211-231 201-221 (258)
122 PF06160 EzrA: Septation ring 98.1 0.00029 6.2E-09 78.5 19.9 55 172-226 348-402 (560)
123 KOG0249 LAR-interacting protei 98.0 0.00011 2.4E-09 81.2 15.8 12 150-161 169-180 (916)
124 KOG0963 Transcription factor/C 98.0 0.0014 3E-08 72.1 24.1 18 214-231 321-338 (629)
125 PF10473 CENP-F_leu_zip: Leuci 98.0 0.0011 2.4E-08 60.9 19.9 29 61-89 11-39 (140)
126 KOG2129 Uncharacterized conser 98.0 0.00096 2.1E-08 70.0 21.8 35 173-207 251-285 (552)
127 KOG1853 LIS1-interacting prote 98.0 0.0013 2.8E-08 65.1 21.5 18 103-120 49-66 (333)
128 PF09728 Taxilin: Myosin-like 98.0 0.0024 5.3E-08 66.0 24.8 58 174-231 243-300 (309)
129 PF09789 DUF2353: Uncharacteri 98.0 0.0027 5.8E-08 65.7 24.8 38 191-228 191-228 (319)
130 KOG0612 Rho-associated, coiled 98.0 0.00093 2E-08 77.9 23.6 17 215-231 672-688 (1317)
131 KOG0999 Microtubule-associated 98.0 0.0015 3.2E-08 70.7 23.3 54 47-100 9-76 (772)
132 KOG4673 Transcription factor T 98.0 0.0013 2.9E-08 72.6 23.2 53 48-100 404-458 (961)
133 PF04849 HAP1_N: HAP1 N-termin 98.0 0.00046 9.9E-09 70.7 18.6 36 54-89 161-196 (306)
134 PF14915 CCDC144C: CCDC144C pr 98.0 0.0043 9.3E-08 63.1 24.9 102 50-151 3-112 (305)
135 KOG4360 Uncharacterized coiled 98.0 0.0016 3.5E-08 70.0 22.9 99 135-233 203-305 (596)
136 KOG0249 LAR-interacting protei 98.0 0.00037 8E-09 77.2 18.4 36 49-84 94-129 (916)
137 PF09730 BicD: Microtubule-ass 98.0 0.0015 3.3E-08 73.9 23.9 107 125-231 71-177 (717)
138 PF04012 PspA_IM30: PspA/IM30 98.0 0.0026 5.6E-08 62.3 22.9 49 49-97 26-74 (221)
139 TIGR03007 pepcterm_ChnLen poly 98.0 0.00046 1E-08 75.3 19.5 50 48-97 170-227 (498)
140 KOG0978 E3 ubiquitin ligase in 98.0 0.0045 9.8E-08 69.7 27.2 56 178-233 569-624 (698)
141 PF15397 DUF4618: Domain of un 98.0 0.0052 1.1E-07 61.8 24.9 39 193-231 190-228 (258)
142 PF13514 AAA_27: AAA domain 98.0 0.0028 6.2E-08 75.9 27.4 36 62-97 738-773 (1111)
143 PF05622 HOOK: HOOK protein; 98.0 1.6E-06 3.4E-11 98.8 0.0 94 136-229 331-424 (713)
144 PF13851 GAS: Growth-arrest sp 98.0 0.004 8.6E-08 60.7 23.4 21 208-228 148-168 (201)
145 PF04912 Dynamitin: Dynamitin 97.9 0.003 6.5E-08 67.3 24.5 24 49-72 90-113 (388)
146 KOG0018 Structural maintenance 97.9 0.0014 3E-08 75.7 22.9 35 196-230 856-890 (1141)
147 KOG0946 ER-Golgi vesicle-tethe 97.9 0.00091 2E-08 75.1 20.7 69 51-123 648-716 (970)
148 TIGR01005 eps_transp_fam exopo 97.9 0.0019 4.1E-08 74.3 24.2 30 71-100 191-220 (754)
149 PF06008 Laminin_I: Laminin Do 97.9 0.005 1.1E-07 62.1 24.2 21 46-66 17-37 (264)
150 PF15066 CAGE1: Cancer-associa 97.9 0.0013 2.9E-08 69.9 20.2 56 44-100 295-350 (527)
151 TIGR03017 EpsF chain length de 97.9 0.0024 5.2E-08 68.6 23.0 26 71-96 175-200 (444)
152 PRK11281 hypothetical protein; 97.9 0.0011 2.4E-08 78.7 21.8 16 45-60 35-50 (1113)
153 KOG4673 Transcription factor T 97.9 0.0028 6E-08 70.2 23.1 30 48-77 411-440 (961)
154 PF04111 APG6: Autophagy prote 97.9 0.00022 4.9E-09 73.8 14.3 62 175-236 78-139 (314)
155 PF10168 Nup88: Nuclear pore c 97.9 0.0015 3.3E-08 74.5 22.2 27 204-230 686-712 (717)
156 PF10481 CENP-F_N: Cenp-F N-te 97.9 0.0016 3.5E-08 65.2 19.4 27 204-230 163-189 (307)
157 KOG0946 ER-Golgi vesicle-tethe 97.9 0.0015 3.3E-08 73.4 21.0 11 87-97 705-715 (970)
158 PF09789 DUF2353: Uncharacteri 97.9 0.0096 2.1E-07 61.6 25.6 87 145-231 127-224 (319)
159 COG4477 EzrA Negative regulato 97.9 0.0015 3.2E-08 70.8 20.4 29 181-209 381-409 (570)
160 TIGR02977 phageshock_pspA phag 97.9 0.0061 1.3E-07 60.0 23.0 47 50-96 28-74 (219)
161 TIGR00634 recN DNA repair prot 97.9 0.0045 9.9E-08 69.0 24.8 42 52-93 160-201 (563)
162 PF05911 DUF869: Plant protein 97.8 0.0007 1.5E-08 77.4 18.5 25 205-229 735-759 (769)
163 PF10473 CENP-F_leu_zip: Leuci 97.8 0.0033 7.2E-08 57.8 19.4 33 128-160 57-89 (140)
164 KOG1103 Predicted coiled-coil 97.8 0.0093 2E-07 61.6 24.5 69 49-117 89-157 (561)
165 PF09728 Taxilin: Myosin-like 97.8 0.008 1.7E-07 62.3 24.5 47 52-98 21-67 (309)
166 PF13514 AAA_27: AAA domain 97.8 0.0065 1.4E-07 72.9 27.2 36 61-96 674-709 (1111)
167 PRK10698 phage shock protein P 97.8 0.0066 1.4E-07 60.0 22.8 46 50-95 28-73 (222)
168 COG0419 SbcC ATPase involved i 97.8 0.0064 1.4E-07 71.5 26.6 44 180-223 693-739 (908)
169 PRK10929 putative mechanosensi 97.8 0.011 2.3E-07 70.4 28.0 53 47-99 103-162 (1109)
170 KOG2991 Splicing regulator [RN 97.8 0.012 2.7E-07 58.5 23.8 15 50-64 70-84 (330)
171 PRK10246 exonuclease subunit S 97.8 0.0087 1.9E-07 71.5 27.6 35 52-86 529-563 (1047)
172 KOG0260 RNA polymerase II, lar 97.8 0.00062 1.3E-08 78.8 17.0 6 449-454 1595-1600(1605)
173 PF09787 Golgin_A5: Golgin sub 97.8 0.0083 1.8E-07 66.2 25.5 26 47-72 110-135 (511)
174 PRK10869 recombination and rep 97.8 0.0027 5.9E-08 70.6 21.7 25 198-222 343-367 (553)
175 PF06008 Laminin_I: Laminin Do 97.8 0.016 3.6E-07 58.4 25.5 48 41-88 19-66 (264)
176 PF12325 TMF_TATA_bd: TATA ele 97.8 0.0014 3E-08 58.7 15.7 70 126-195 19-88 (120)
177 PF12815 CTD: Spt5 C-terminal 97.8 5.1E-06 1.1E-10 74.6 0.0 18 433-450 103-121 (123)
178 PRK10929 putative mechanosensi 97.8 0.0024 5.2E-08 75.8 21.9 16 45-60 22-37 (1109)
179 KOG0978 E3 ubiquitin ligase in 97.8 0.0035 7.6E-08 70.5 22.1 37 57-93 437-473 (698)
180 TIGR03017 EpsF chain length de 97.8 0.0089 1.9E-07 64.2 24.8 57 46-102 141-199 (444)
181 PF13870 DUF4201: Domain of un 97.8 0.012 2.6E-07 55.9 22.9 16 107-122 50-65 (177)
182 PF09787 Golgin_A5: Golgin sub 97.8 0.0035 7.6E-08 69.1 22.0 32 127-158 278-309 (511)
183 COG0419 SbcC ATPase involved i 97.8 0.01 2.2E-07 69.9 27.0 33 196-228 403-435 (908)
184 PF06818 Fez1: Fez1; InterPro 97.8 0.0069 1.5E-07 58.7 21.1 19 177-195 133-151 (202)
185 PF10481 CENP-F_N: Cenp-F N-te 97.7 0.0024 5.3E-08 63.9 17.9 28 198-225 164-191 (307)
186 PRK11281 hypothetical protein; 97.7 0.0093 2E-07 71.1 26.0 42 49-90 124-165 (1113)
187 PF10168 Nup88: Nuclear pore c 97.7 0.0017 3.8E-08 74.1 19.3 29 198-226 687-715 (717)
188 COG0497 RecN ATPase involved i 97.7 0.004 8.6E-08 68.7 20.8 15 62-76 166-180 (557)
189 KOG2129 Uncharacterized conser 97.7 0.0061 1.3E-07 64.2 20.8 19 469-487 524-543 (552)
190 KOG1937 Uncharacterized conser 97.7 0.012 2.6E-07 62.6 22.8 34 54-87 235-268 (521)
191 PLN03229 acetyl-coenzyme A car 97.7 0.0095 2.1E-07 67.3 23.1 19 47-65 430-448 (762)
192 PRK10246 exonuclease subunit S 97.7 0.029 6.4E-07 67.0 28.9 38 49-86 533-570 (1047)
193 KOG4593 Mitotic checkpoint pro 97.7 0.025 5.3E-07 63.3 26.0 17 50-66 95-111 (716)
194 PF09755 DUF2046: Uncharacteri 97.6 0.035 7.6E-07 57.1 25.1 61 171-231 138-199 (310)
195 PF12795 MscS_porin: Mechanose 97.6 0.024 5.2E-07 56.4 23.7 29 67-95 38-66 (240)
196 PF13166 AAA_13: AAA domain 97.6 0.011 2.5E-07 67.2 24.3 52 178-229 420-471 (712)
197 TIGR00634 recN DNA repair prot 97.6 0.0096 2.1E-07 66.4 23.1 41 59-99 160-200 (563)
198 KOG0018 Structural maintenance 97.6 0.0066 1.4E-07 70.3 21.6 35 127-161 314-348 (1141)
199 PF15254 CCDC14: Coiled-coil d 97.6 0.01 2.2E-07 66.8 22.3 48 178-225 497-544 (861)
200 PF08614 ATG16: Autophagy prot 97.6 0.00026 5.7E-09 68.3 8.9 13 110-122 71-83 (194)
201 PLN03188 kinesin-12 family pro 97.6 0.023 4.9E-07 67.3 26.0 64 170-233 1157-1241(1320)
202 KOG1937 Uncharacterized conser 97.6 0.022 4.7E-07 60.8 23.4 9 55-63 233-241 (521)
203 PF06705 SF-assemblin: SF-asse 97.6 0.078 1.7E-06 53.0 26.8 12 216-227 203-214 (247)
204 PF05911 DUF869: Plant protein 97.6 0.027 5.9E-07 64.7 26.0 23 203-225 183-205 (769)
205 PF10212 TTKRSYEDQ: Predicted 97.6 0.019 4E-07 62.7 23.4 55 173-230 460-514 (518)
206 KOG0993 Rab5 GTPase effector R 97.6 0.032 7E-07 58.8 24.1 73 52-124 291-363 (542)
207 PRK10869 recombination and rep 97.6 0.018 4E-07 64.1 24.1 24 191-214 343-366 (553)
208 PF15035 Rootletin: Ciliary ro 97.6 0.01 2.2E-07 56.9 19.1 113 54-166 3-117 (182)
209 PF14073 Cep57_CLD: Centrosome 97.6 0.043 9.4E-07 52.2 22.9 162 54-228 5-173 (178)
210 PF13870 DUF4201: Domain of un 97.6 0.03 6.4E-07 53.2 22.2 13 215-227 157-169 (177)
211 PF12325 TMF_TATA_bd: TATA ele 97.6 0.0043 9.4E-08 55.6 15.3 83 127-209 27-109 (120)
212 KOG3091 Nuclear pore complex, 97.6 0.004 8.6E-08 67.0 17.6 32 49-80 337-368 (508)
213 KOG0982 Centrosomal protein Nu 97.6 0.018 3.9E-07 61.0 22.0 16 59-74 221-236 (502)
214 PLN03229 acetyl-coenzyme A car 97.5 0.004 8.7E-08 70.2 18.3 12 217-228 695-706 (762)
215 COG1842 PspA Phage shock prote 97.5 0.019 4E-07 57.0 21.0 47 50-96 28-74 (225)
216 KOG4807 F-actin binding protei 97.5 0.026 5.7E-07 59.2 22.7 54 175-228 519-576 (593)
217 PF12815 CTD: Spt5 C-terminal 97.5 1.9E-05 4.2E-10 70.9 0.0 6 352-357 34-39 (123)
218 KOG0962 DNA repair protein RAD 97.5 0.007 1.5E-07 71.8 20.8 6 177-182 887-892 (1294)
219 KOG4807 F-actin binding protei 97.5 0.025 5.5E-07 59.3 22.5 24 49-72 294-317 (593)
220 KOG4572 Predicted DNA-binding 97.5 0.0078 1.7E-07 67.7 19.8 30 131-160 1003-1032(1424)
221 PRK10361 DNA recombination pro 97.5 0.048 1E-06 59.4 25.6 123 106-228 67-197 (475)
222 KOG4360 Uncharacterized coiled 97.5 0.0088 1.9E-07 64.5 19.4 83 141-226 202-284 (596)
223 KOG1899 LAR transmembrane tyro 97.5 0.0048 1E-07 67.8 17.7 45 49-93 107-151 (861)
224 PF07926 TPR_MLP1_2: TPR/MLP1/ 97.5 0.016 3.4E-07 52.6 18.7 16 128-143 64-79 (132)
225 KOG4809 Rab6 GTPase-interactin 97.5 0.027 5.8E-07 61.3 23.0 67 59-125 330-406 (654)
226 COG4477 EzrA Negative regulato 97.5 0.042 9.2E-07 59.9 24.5 52 47-98 105-156 (570)
227 PLN02939 transferase, transfer 97.5 0.014 3E-07 68.2 22.4 21 141-161 261-281 (977)
228 PF07798 DUF1640: Protein of u 97.5 0.019 4.1E-07 54.7 19.8 29 109-137 76-105 (177)
229 PLN02939 transferase, transfer 97.5 0.018 3.9E-07 67.4 23.2 13 148-160 328-340 (977)
230 PRK09841 cryptic autophosphory 97.5 0.0038 8.1E-08 71.7 17.8 22 76-97 269-290 (726)
231 PF13166 AAA_13: AAA domain 97.5 0.056 1.2E-06 61.6 26.8 10 48-57 267-276 (712)
232 PF05483 SCP-1: Synaptonemal c 97.5 0.077 1.7E-06 59.3 26.2 11 77-87 292-302 (786)
233 KOG1850 Myosin-like coiled-coi 97.4 0.099 2.1E-06 53.7 24.9 9 177-185 252-260 (391)
234 KOG0243 Kinesin-like protein [ 97.4 0.019 4.2E-07 66.9 22.1 13 46-58 369-381 (1041)
235 PF08614 ATG16: Autophagy prot 97.4 0.0018 4E-08 62.4 12.0 29 51-79 72-100 (194)
236 PF01576 Myosin_tail_1: Myosin 97.4 3.4E-05 7.4E-10 89.6 0.0 31 130-160 412-442 (859)
237 PF08580 KAR9: Yeast cortical 97.4 0.042 9.1E-07 62.7 24.5 16 108-123 93-108 (683)
238 PRK11519 tyrosine kinase; Prov 97.4 0.007 1.5E-07 69.4 18.5 24 182-205 370-393 (719)
239 KOG1899 LAR transmembrane tyro 97.4 0.003 6.5E-08 69.3 14.5 12 219-230 276-287 (861)
240 PF00015 MCPsignal: Methyl-acc 97.4 0.073 1.6E-06 50.7 22.9 16 107-122 83-98 (213)
241 cd07664 BAR_SNX2 The Bin/Amphi 97.4 0.18 3.8E-06 50.4 27.5 89 106-194 83-185 (234)
242 KOG0962 DNA repair protein RAD 97.4 0.063 1.4E-06 64.1 26.2 122 43-165 162-289 (1294)
243 PF07111 HCR: Alpha helical co 97.4 0.066 1.4E-06 60.1 25.0 49 182-230 556-609 (739)
244 PF03915 AIP3: Actin interacti 97.4 0.0053 1.2E-07 66.0 16.3 60 136-195 212-273 (424)
245 PF15035 Rootletin: Ciliary ro 97.4 0.041 8.8E-07 52.9 20.7 34 128-161 86-119 (182)
246 COG4913 Uncharacterized protei 97.4 0.041 9E-07 61.7 23.2 45 52-96 615-659 (1104)
247 PF06785 UPF0242: Uncharacteri 97.4 0.047 1E-06 56.3 22.0 35 128-162 139-173 (401)
248 PF12795 MscS_porin: Mechanose 97.4 0.038 8.3E-07 55.0 21.4 34 67-100 31-64 (240)
249 PRK10698 phage shock protein P 97.4 0.056 1.2E-06 53.5 22.1 12 215-226 206-217 (222)
250 PF05557 MAD: Mitotic checkpoi 97.4 4.1E-05 8.9E-10 87.5 0.0 32 200-231 285-319 (722)
251 PF11559 ADIP: Afadin- and alp 97.4 0.026 5.6E-07 52.2 18.5 55 109-163 38-92 (151)
252 KOG4809 Rab6 GTPase-interactin 97.3 0.029 6.3E-07 61.1 21.0 15 109-123 369-383 (654)
253 PF15254 CCDC14: Coiled-coil d 97.3 0.016 3.4E-07 65.4 19.6 22 77-98 390-411 (861)
254 PF10498 IFT57: Intra-flagella 97.3 0.019 4.2E-07 60.6 19.6 13 49-61 194-206 (359)
255 cd07667 BAR_SNX30 The Bin/Amph 97.3 0.21 4.5E-06 50.1 26.0 143 49-194 54-200 (240)
256 PF04111 APG6: Autophagy prote 97.3 0.0038 8.2E-08 64.8 14.0 51 191-243 101-152 (314)
257 PF07111 HCR: Alpha helical co 97.3 0.091 2E-06 59.0 25.2 34 127-160 246-279 (739)
258 COG2433 Uncharacterized conser 97.3 0.0094 2E-07 65.7 17.3 28 177-204 476-503 (652)
259 PF15294 Leu_zip: Leucine zipp 97.3 0.0058 1.2E-07 62.0 14.6 43 55-97 127-169 (278)
260 PF01442 Apolipoprotein: Apoli 97.3 0.14 3.1E-06 47.6 25.1 19 51-69 3-21 (202)
261 smart00806 AIP3 Actin interact 97.3 0.089 1.9E-06 56.3 23.8 51 144-194 217-276 (426)
262 PF14992 TMCO5: TMCO5 family 97.3 0.0085 1.8E-07 60.8 15.5 60 63-122 14-79 (280)
263 PF09325 Vps5: Vps5 C terminal 97.3 0.063 1.4E-06 52.6 21.5 34 135-168 119-152 (236)
264 TIGR02977 phageshock_pspA phag 97.3 0.12 2.7E-06 50.7 23.5 20 141-160 110-129 (219)
265 COG2433 Uncharacterized conser 97.3 0.016 3.6E-07 63.8 18.6 26 204-229 482-507 (652)
266 PF05384 DegS: Sensor protein 97.3 0.11 2.5E-06 48.8 21.8 9 141-149 102-110 (159)
267 PF14988 DUF4515: Domain of un 97.3 0.17 3.6E-06 49.6 23.9 29 196-224 170-198 (206)
268 PF05276 SH3BP5: SH3 domain-bi 97.3 0.25 5.4E-06 49.5 27.0 45 187-231 182-226 (239)
269 PF01576 Myosin_tail_1: Myosin 97.3 6.3E-05 1.4E-09 87.5 0.0 59 173-231 572-630 (859)
270 cd07627 BAR_Vps5p The Bin/Amph 97.3 0.12 2.5E-06 50.8 22.9 64 131-194 95-169 (216)
271 cd00176 SPEC Spectrin repeats, 97.3 0.06 1.3E-06 50.2 20.2 33 170-202 141-173 (213)
272 KOG4438 Centromere-associated 97.3 0.1 2.2E-06 55.5 23.4 36 127-162 245-280 (446)
273 KOG1103 Predicted coiled-coil 97.2 0.047 1E-06 56.6 20.3 20 177-196 247-266 (561)
274 cd07627 BAR_Vps5p The Bin/Amph 97.2 0.24 5.1E-06 48.6 27.8 13 134-146 119-131 (216)
275 PF06637 PV-1: PV-1 protein (P 97.2 0.18 3.8E-06 53.0 24.5 28 200-227 353-380 (442)
276 KOG4403 Cell surface glycoprot 97.2 0.0079 1.7E-07 63.6 14.9 53 109-161 238-290 (575)
277 cd07666 BAR_SNX7 The Bin/Amphi 97.2 0.29 6.2E-06 49.2 25.6 90 131-226 143-233 (243)
278 PF06548 Kinesin-related: Kine 97.2 0.077 1.7E-06 56.8 21.9 181 54-234 223-472 (488)
279 PRK09841 cryptic autophosphory 97.2 0.017 3.8E-07 66.3 18.7 24 72-95 272-295 (726)
280 TIGR01010 BexC_CtrB_KpsE polys 97.2 0.022 4.7E-07 59.9 18.0 24 200-223 282-305 (362)
281 PF12777 MT: Microtubule-bindi 97.2 0.13 2.9E-06 54.0 23.5 58 179-236 239-297 (344)
282 PF07798 DUF1640: Protein of u 97.2 0.061 1.3E-06 51.2 19.1 14 216-229 137-150 (177)
283 KOG3958 Putative dynamitin [Cy 97.1 0.26 5.6E-06 50.3 23.9 48 183-230 322-370 (371)
284 PF03148 Tektin: Tektin family 97.1 0.3 6.6E-06 52.1 26.2 24 55-78 66-89 (384)
285 PF15450 DUF4631: Domain of un 97.1 0.11 2.4E-06 56.6 22.4 38 86-123 356-393 (531)
286 PF15450 DUF4631: Domain of un 97.1 0.15 3.3E-06 55.6 23.4 19 175-193 455-473 (531)
287 COG3096 MukB Uncharacterized p 97.1 0.1 2.3E-06 58.7 22.5 52 177-228 1061-1112(1480)
288 COG3096 MukB Uncharacterized p 97.1 0.19 4E-06 56.8 24.0 72 46-120 832-907 (1480)
289 PF03148 Tektin: Tektin family 97.1 0.49 1.1E-05 50.5 27.0 31 49-79 119-149 (384)
290 PF00769 ERM: Ezrin/radixin/mo 97.1 0.025 5.4E-07 56.8 16.2 18 214-231 186-203 (246)
291 KOG0804 Cytoplasmic Zn-finger 97.1 0.027 5.7E-07 60.2 16.9 8 200-207 439-446 (493)
292 PF12777 MT: Microtubule-bindi 97.1 0.094 2E-06 55.1 21.2 55 175-229 221-275 (344)
293 PF15290 Syntaphilin: Golgi-lo 97.1 0.017 3.6E-07 58.3 14.5 48 177-224 119-166 (305)
294 KOG0239 Kinesin (KAR3 subfamil 97.1 0.042 9E-07 62.5 19.6 52 180-231 260-314 (670)
295 PF10234 Cluap1: Clusterin-ass 97.1 0.036 7.9E-07 56.1 17.2 58 173-230 195-259 (267)
296 cd07624 BAR_SNX7_30 The Bin/Am 97.0 0.35 7.5E-06 46.9 25.2 134 48-191 16-157 (200)
297 PF06785 UPF0242: Uncharacteri 97.0 0.12 2.6E-06 53.4 20.8 17 215-231 246-262 (401)
298 PF05384 DegS: Sensor protein 97.0 0.1 2.3E-06 49.0 18.9 20 211-230 134-153 (159)
299 TIGR03794 NHPM_micro_HlyD NHPM 97.0 0.056 1.2E-06 58.0 19.5 24 204-227 228-251 (421)
300 KOG4677 Golgi integral membran 97.0 0.079 1.7E-06 56.6 19.7 22 139-160 325-346 (554)
301 PF05700 BCAS2: Breast carcino 97.0 0.028 6.1E-07 55.4 15.8 32 197-228 183-214 (221)
302 PF10498 IFT57: Intra-flagella 97.0 0.043 9.4E-07 58.0 18.1 17 213-229 331-347 (359)
303 PF11559 ADIP: Afadin- and alp 97.0 0.051 1.1E-06 50.2 16.7 7 76-82 54-60 (151)
304 PF09738 DUF2051: Double stran 97.0 0.076 1.7E-06 54.9 19.4 52 48-99 79-130 (302)
305 KOG0993 Rab5 GTPase effector R 97.0 0.28 6.1E-06 52.0 23.5 31 86-116 343-373 (542)
306 KOG4302 Microtubule-associated 97.0 0.079 1.7E-06 59.7 20.9 57 104-160 122-190 (660)
307 PRK11519 tyrosine kinase; Prov 97.0 0.045 9.8E-07 62.9 19.6 40 155-194 350-389 (719)
308 KOG2196 Nuclear porin [Nuclear 97.0 0.12 2.7E-06 51.2 19.7 51 49-99 74-124 (254)
309 PF00769 ERM: Ezrin/radixin/mo 97.0 0.051 1.1E-06 54.6 17.7 20 209-228 109-128 (246)
310 cd07596 BAR_SNX The Bin/Amphip 97.0 0.22 4.8E-06 47.6 21.6 56 139-194 105-171 (218)
311 PF13805 Pil1: Eisosome compon 97.0 0.3 6.5E-06 49.6 22.9 26 169-194 166-191 (271)
312 KOG0239 Kinesin (KAR3 subfamil 97.0 0.035 7.7E-07 63.1 18.0 48 173-220 246-293 (670)
313 KOG0243 Kinesin-like protein [ 96.9 0.14 3.1E-06 60.0 22.8 24 72-95 446-469 (1041)
314 PF09738 DUF2051: Double stran 96.9 0.047 1E-06 56.4 17.2 58 42-99 80-137 (302)
315 KOG1850 Myosin-like coiled-coi 96.9 0.63 1.4E-05 48.0 25.1 46 186-231 219-264 (391)
316 PF15294 Leu_zip: Leucine zipp 96.9 0.033 7.1E-07 56.6 15.4 10 71-80 78-87 (278)
317 PF10146 zf-C4H2: Zinc finger- 96.9 0.03 6.5E-07 55.7 14.8 19 175-193 60-78 (230)
318 TIGR03794 NHPM_micro_HlyD NHPM 96.9 0.1 2.2E-06 56.0 20.1 22 210-231 227-248 (421)
319 KOG0992 Uncharacterized conser 96.9 0.3 6.6E-06 53.0 23.0 17 215-231 401-417 (613)
320 PRK10884 SH3 domain-containing 96.9 0.013 2.8E-07 57.4 12.0 11 136-146 145-155 (206)
321 PF10234 Cluap1: Clusterin-ass 96.9 0.16 3.4E-06 51.6 20.0 65 127-194 173-237 (267)
322 COG1322 Predicted nuclease of 96.9 0.68 1.5E-05 50.4 26.0 41 196-236 157-197 (448)
323 KOG1655 Protein involved in va 96.9 0.15 3.3E-06 49.1 18.4 18 206-223 161-178 (218)
324 KOG4637 Adaptor for phosphoino 96.8 0.15 3.3E-06 53.4 19.8 52 48-99 134-185 (464)
325 COG3206 GumC Uncharacterized p 96.8 0.08 1.7E-06 57.5 19.0 22 50-71 199-220 (458)
326 COG0497 RecN ATPase involved i 96.8 0.13 2.9E-06 57.0 20.7 31 49-79 167-197 (557)
327 TIGR02971 heterocyst_DevB ABC 96.8 0.086 1.9E-06 54.3 18.4 24 206-229 182-205 (327)
328 cd07596 BAR_SNX The Bin/Amphip 96.8 0.48 1E-05 45.2 27.3 22 53-74 11-32 (218)
329 KOG4687 Uncharacterized coiled 96.8 0.18 3.9E-06 50.9 19.6 18 48-65 11-28 (389)
330 KOG0804 Cytoplasmic Zn-finger 96.8 0.082 1.8E-06 56.5 18.1 14 200-213 432-445 (493)
331 cd07623 BAR_SNX1_2 The Bin/Amp 96.8 0.59 1.3E-05 46.1 27.6 62 134-195 106-176 (224)
332 PRK10476 multidrug resistance 96.8 0.041 8.9E-07 57.4 16.0 21 210-230 190-210 (346)
333 KOG2685 Cystoskeletal protein 96.8 0.77 1.7E-05 49.0 25.1 41 189-229 351-391 (421)
334 PF04949 Transcrip_act: Transc 96.8 0.13 2.8E-06 47.5 16.8 42 82-123 60-101 (159)
335 PF12252 SidE: Dot/Icm substra 96.8 0.2 4.3E-06 58.4 21.9 17 75-91 1132-1148(1439)
336 TIGR02971 heterocyst_DevB ABC 96.8 0.089 1.9E-06 54.2 18.1 20 211-230 180-199 (327)
337 COG3206 GumC Uncharacterized p 96.8 0.17 3.6E-06 55.1 21.0 23 70-92 198-220 (458)
338 KOG2008 BTK-associated SH3-dom 96.8 0.41 8.8E-06 49.3 21.9 24 208-231 188-211 (426)
339 PF14992 TMCO5: TMCO5 family 96.8 0.028 6E-07 57.1 13.6 36 64-99 8-43 (280)
340 PF04912 Dynamitin: Dynamitin 96.8 0.1 2.2E-06 55.7 18.7 22 208-229 366-387 (388)
341 PLN03188 kinesin-12 family pro 96.8 0.44 9.5E-06 57.0 25.0 16 53-68 1045-1060(1320)
342 PF09325 Vps5: Vps5 C terminal 96.8 0.63 1.4E-05 45.5 27.6 26 169-194 164-189 (236)
343 KOG2273 Membrane coat complex 96.7 0.4 8.6E-06 52.8 23.8 26 52-77 273-298 (503)
344 PF11932 DUF3450: Protein of u 96.7 0.18 3.9E-06 50.6 19.3 6 221-226 157-162 (251)
345 PF12252 SidE: Dot/Icm substra 96.7 0.058 1.3E-06 62.6 17.2 14 83-96 1133-1146(1439)
346 COG5074 t-SNARE complex subuni 96.7 0.6 1.3E-05 46.3 21.8 28 52-79 24-51 (280)
347 cd07666 BAR_SNX7 The Bin/Amphi 96.7 0.79 1.7E-05 46.1 23.9 28 49-76 57-84 (243)
348 cd07664 BAR_SNX2 The Bin/Amphi 96.7 0.72 1.6E-05 46.0 23.0 12 55-66 31-42 (234)
349 PTZ00464 SNF-7-like protein; P 96.7 0.37 8E-06 47.4 20.6 24 51-74 16-39 (211)
350 KOG0972 Huntingtin interacting 96.7 0.18 3.9E-06 51.4 18.4 14 177-190 310-323 (384)
351 PF04582 Reo_sigmaC: Reovirus 96.7 0.003 6.4E-08 65.3 6.0 19 80-98 27-45 (326)
352 PF14735 HAUS4: HAUS augmin-li 96.7 0.84 1.8E-05 45.7 24.7 27 202-228 201-227 (238)
353 KOG4403 Cell surface glycoprot 96.6 0.19 4.1E-06 53.6 18.8 16 130-145 309-324 (575)
354 KOG3478 Prefoldin subunit 6, K 96.6 0.058 1.3E-06 47.3 12.6 48 181-231 64-111 (120)
355 PF15290 Syntaphilin: Golgi-lo 96.6 0.059 1.3E-06 54.4 14.5 15 127-141 121-135 (305)
356 PRK03947 prefoldin subunit alp 96.6 0.034 7.4E-07 50.7 12.1 27 200-226 105-131 (140)
357 KOG4687 Uncharacterized coiled 96.6 0.29 6.3E-06 49.5 19.2 37 192-228 163-206 (389)
358 PF05149 Flagellar_rod: Parafl 96.6 0.92 2E-05 46.6 23.3 19 109-127 62-80 (289)
359 COG4487 Uncharacterized protei 96.6 1.2 2.6E-05 48.0 24.9 14 131-144 115-128 (438)
360 PF04740 LXG: LXG domain of WX 96.6 0.74 1.6E-05 44.2 22.1 16 73-88 16-31 (204)
361 TIGR01010 BexC_CtrB_KpsE polys 96.6 0.36 7.8E-06 50.7 21.3 27 203-229 278-304 (362)
362 PTZ00464 SNF-7-like protein; P 96.6 0.29 6.3E-06 48.1 19.0 31 49-79 21-51 (211)
363 PF09304 Cortex-I_coil: Cortex 96.6 0.19 4.2E-06 44.0 15.6 34 177-210 60-93 (107)
364 PRK10476 multidrug resistance 96.6 0.071 1.5E-06 55.6 15.8 17 51-67 84-100 (346)
365 cd00176 SPEC Spectrin repeats, 96.6 0.22 4.8E-06 46.4 17.7 19 177-195 141-159 (213)
366 PF09731 Mitofilin: Mitochondr 96.6 1 2.3E-05 50.4 26.0 17 83-99 253-269 (582)
367 cd07665 BAR_SNX1 The Bin/Amphi 96.6 0.95 2.1E-05 45.2 27.7 88 107-194 84-185 (234)
368 PF04108 APG17: Autophagy prot 96.6 1.2 2.5E-05 48.1 25.3 49 103-151 252-304 (412)
369 PF05700 BCAS2: Breast carcino 96.6 0.19 4.2E-06 49.6 17.8 25 127-151 147-171 (221)
370 KOG0288 WD40 repeat protein Ti 96.6 0.12 2.6E-06 54.8 16.9 21 73-93 12-32 (459)
371 KOG4677 Golgi integral membran 96.6 0.35 7.6E-06 51.9 20.3 37 173-209 307-343 (554)
372 COG4717 Uncharacterized conser 96.5 0.42 9.1E-06 55.0 22.2 63 39-101 174-239 (984)
373 COG4026 Uncharacterized protei 96.5 0.083 1.8E-06 51.8 14.5 34 127-160 132-165 (290)
374 PF12072 DUF3552: Domain of un 96.5 0.88 1.9E-05 44.2 24.3 12 54-65 28-39 (201)
375 PF10267 Tmemb_cc2: Predicted 96.5 0.13 2.9E-06 54.9 17.4 43 175-223 276-318 (395)
376 PF05278 PEARLI-4: Arabidopsis 96.5 0.13 2.8E-06 52.1 16.3 61 170-230 202-262 (269)
377 KOG3647 Predicted coiled-coil 96.5 0.49 1.1E-05 47.7 20.0 41 127-167 116-156 (338)
378 KOG2196 Nuclear porin [Nuclear 96.5 0.6 1.3E-05 46.5 20.3 32 200-231 216-247 (254)
379 KOG4460 Nuclear pore complex, 96.5 0.32 7E-06 53.3 20.0 12 145-156 670-681 (741)
380 PF04108 APG17: Autophagy prot 96.5 0.78 1.7E-05 49.4 23.4 20 212-231 362-381 (412)
381 PF06120 Phage_HK97_TLTM: Tail 96.5 1.1 2.5E-05 46.3 23.2 24 53-76 41-64 (301)
382 KOG2751 Beclin-like protein [S 96.5 0.12 2.6E-06 55.2 16.3 55 181-235 217-271 (447)
383 PF06637 PV-1: PV-1 protein (P 96.5 1.3 2.7E-05 46.8 23.4 26 206-231 352-377 (442)
384 cd07599 BAR_Rvs167p The Bin/Am 96.5 0.85 1.9E-05 44.5 21.6 45 49-93 5-49 (216)
385 PF10267 Tmemb_cc2: Predicted 96.5 0.088 1.9E-06 56.2 15.6 33 65-97 53-85 (395)
386 PF04582 Reo_sigmaC: Reovirus 96.5 0.0048 1E-07 63.8 5.9 26 203-228 133-158 (326)
387 COG5293 Predicted ATPase [Gene 96.4 0.92 2E-05 49.0 22.7 66 128-194 340-405 (591)
388 PF07058 Myosin_HC-like: Myosi 96.4 0.33 7.1E-06 49.7 18.6 13 179-191 119-131 (351)
389 KOG0810 SNARE protein Syntaxin 96.4 0.51 1.1E-05 48.7 20.5 28 49-76 36-63 (297)
390 PF10212 TTKRSYEDQ: Predicted 96.4 0.43 9.3E-06 52.4 20.7 49 172-223 466-514 (518)
391 PF05276 SH3BP5: SH3 domain-bi 96.4 1.2 2.6E-05 44.7 23.0 51 45-98 6-56 (239)
392 cd07648 F-BAR_FCHO The F-BAR ( 96.4 1.2 2.6E-05 44.7 24.0 16 215-230 220-235 (261)
393 KOG3091 Nuclear pore complex, 96.4 0.14 3E-06 55.5 16.7 29 132-160 413-444 (508)
394 COG1382 GimC Prefoldin, chaper 96.4 0.064 1.4E-06 48.0 12.0 36 194-229 75-110 (119)
395 cd07598 BAR_FAM92 The Bin/Amph 96.4 1.1 2.4E-05 44.0 25.5 46 52-97 3-48 (211)
396 TIGR02338 gimC_beta prefoldin, 96.4 0.096 2.1E-06 46.0 13.0 25 132-156 12-36 (110)
397 PF13949 ALIX_LYPXL_bnd: ALIX 96.4 1.3 2.7E-05 45.0 23.0 34 64-97 33-66 (296)
398 PRK09343 prefoldin subunit bet 96.4 0.094 2E-06 47.1 13.0 26 203-228 85-110 (121)
399 KOG2685 Cystoskeletal protein 96.4 1.1 2.3E-05 47.9 22.6 37 195-231 277-313 (421)
400 PF11172 DUF2959: Protein of u 96.3 1.1 2.4E-05 43.5 21.0 14 177-190 165-178 (201)
401 COG3264 Small-conductance mech 96.3 0.12 2.6E-06 59.4 16.6 13 109-121 68-80 (835)
402 PRK15178 Vi polysaccharide exp 96.3 1 2.2E-05 48.9 22.8 22 170-191 316-337 (434)
403 PF14735 HAUS4: HAUS augmin-li 96.3 0.83 1.8E-05 45.8 20.5 50 177-230 187-236 (238)
404 PF09486 HrpB7: Bacterial type 96.3 1 2.2E-05 42.4 20.0 32 64-95 12-43 (158)
405 PRK15178 Vi polysaccharide exp 96.3 0.32 6.9E-06 52.7 18.6 23 77-99 245-267 (434)
406 KOG1655 Protein involved in va 96.2 0.78 1.7E-05 44.3 18.9 36 49-84 15-50 (218)
407 KOG4787 Uncharacterized conser 96.2 0.32 7E-06 53.6 18.3 32 49-80 335-366 (852)
408 PRK09343 prefoldin subunit bet 96.2 0.1 2.2E-06 46.8 12.5 32 193-224 82-113 (121)
409 cd07621 BAR_SNX5_6 The Bin/Amp 96.2 1.5 3.2E-05 43.5 26.2 59 107-165 85-148 (219)
410 COG4717 Uncharacterized conser 96.2 1.2 2.5E-05 51.6 23.1 39 177-215 813-851 (984)
411 PF13805 Pil1: Eisosome compon 96.2 1.3 2.8E-05 45.1 21.4 27 176-202 166-192 (271)
412 PRK03947 prefoldin subunit alp 96.2 0.12 2.5E-06 47.2 12.9 34 192-225 104-137 (140)
413 TIGR02338 gimC_beta prefoldin, 96.2 0.088 1.9E-06 46.3 11.7 25 136-160 9-33 (110)
414 COG1382 GimC Prefoldin, chaper 96.2 0.15 3.2E-06 45.7 13.0 25 131-155 14-38 (119)
415 KOG1666 V-SNARE [Intracellular 96.2 1 2.3E-05 44.1 19.7 77 47-123 4-89 (220)
416 TIGR00998 8a0101 efflux pump m 96.1 0.36 7.7E-06 49.7 17.9 18 212-229 188-205 (334)
417 KOG4302 Microtubule-associated 96.1 0.4 8.6E-06 54.3 19.2 15 212-226 228-242 (660)
418 PF09486 HrpB7: Bacterial type 96.1 1.2 2.6E-05 41.9 19.5 27 73-99 14-40 (158)
419 KOG4572 Predicted DNA-binding 96.1 0.92 2E-05 51.9 21.5 23 208-230 1202-1224(1424)
420 PF05769 DUF837: Protein of un 96.1 1.4 3E-05 42.4 22.8 20 207-226 157-176 (181)
421 cd07663 BAR_SNX5 The Bin/Amphi 96.1 1.6 3.5E-05 43.2 26.0 18 106-123 83-100 (218)
422 COG5074 t-SNARE complex subuni 96.1 1.5 3.3E-05 43.6 20.6 15 51-65 30-44 (280)
423 PF07889 DUF1664: Protein of u 96.1 0.12 2.7E-06 46.7 12.4 36 127-162 86-121 (126)
424 PF07106 TBPIP: Tat binding pr 96.1 0.054 1.2E-06 51.0 10.7 64 132-196 74-137 (169)
425 PF07058 Myosin_HC-like: Myosi 96.1 0.42 9.1E-06 49.0 17.4 35 46-80 7-41 (351)
426 PF10191 COG7: Golgi complex c 96.1 0.55 1.2E-05 54.5 20.8 23 75-97 71-93 (766)
427 PF02841 GBP_C: Guanylate-bind 96.1 1.7 3.8E-05 44.6 22.4 15 215-229 282-296 (297)
428 cd00632 Prefoldin_beta Prefold 96.1 0.11 2.4E-06 45.1 11.7 29 129-157 5-33 (105)
429 cd07623 BAR_SNX1_2 The Bin/Amp 96.1 1.7 3.7E-05 42.9 25.6 15 54-68 20-34 (224)
430 KOG1962 B-cell receptor-associ 96.1 0.11 2.5E-06 50.9 12.7 55 173-227 156-210 (216)
431 TIGR00998 8a0101 efflux pump m 96.0 0.23 4.9E-06 51.2 15.8 41 49-89 76-116 (334)
432 KOG2008 BTK-associated SH3-dom 96.0 2.2 4.8E-05 44.0 24.1 37 192-228 193-229 (426)
433 COG1730 GIM5 Predicted prefold 96.0 0.14 3.1E-06 47.4 12.7 38 191-228 96-133 (145)
434 cd07662 BAR_SNX6 The Bin/Amphi 96.0 1.8 4E-05 42.7 25.6 18 106-123 83-100 (218)
435 COG5293 Predicted ATPase [Gene 96.0 1.1 2.3E-05 48.5 20.4 30 174-203 378-407 (591)
436 PF13949 ALIX_LYPXL_bnd: ALIX 96.0 1.6 3.4E-05 44.3 21.5 32 197-228 256-287 (296)
437 PF12004 DUF3498: Domain of un 96.0 0.0018 3.9E-08 70.6 0.0 26 72-97 374-399 (495)
438 PRK03598 putative efflux pump 96.0 0.18 4E-06 52.1 14.8 26 205-230 180-205 (331)
439 PF01540 Lipoprotein_7: Adhesi 96.0 2 4.3E-05 43.4 21.0 48 49-96 93-140 (353)
440 PRK03598 putative efflux pump 96.0 0.28 6.1E-06 50.8 16.1 54 176-231 146-199 (331)
441 KOG4603 TBP-1 interacting prot 96.0 0.28 6.1E-06 46.4 14.2 65 132-197 81-145 (201)
442 PF00015 MCPsignal: Methyl-acc 95.9 1.6 3.4E-05 41.5 23.8 7 112-118 81-87 (213)
443 KOG0972 Huntingtin interacting 95.9 0.26 5.7E-06 50.2 14.9 83 127-212 270-358 (384)
444 PF04100 Vps53_N: Vps53-like, 95.9 0.94 2E-05 48.4 20.1 7 44-50 13-19 (383)
445 cd00890 Prefoldin Prefoldin is 95.9 0.2 4.4E-06 44.4 12.9 37 192-228 90-126 (129)
446 KOG2072 Translation initiation 95.9 4.6 9.9E-05 46.7 25.8 22 139-160 672-693 (988)
447 cd07667 BAR_SNX30 The Bin/Amph 95.9 2.2 4.8E-05 42.8 23.3 15 144-158 136-150 (240)
448 cd07643 I-BAR_IMD_MIM Inverse 95.9 1.7 3.7E-05 43.1 20.0 48 183-230 174-221 (231)
449 KOG2273 Membrane coat complex 95.9 3.5 7.5E-05 45.4 25.1 38 48-85 276-313 (503)
450 PF14073 Cep57_CLD: Centrosome 95.9 1.8 3.8E-05 41.5 22.3 52 177-228 115-166 (178)
451 PF03915 AIP3: Actin interacti 95.9 0.35 7.7E-06 52.2 16.6 17 59-75 150-166 (424)
452 KOG0577 Serine/threonine prote 95.9 2.8 6E-05 47.2 23.4 7 50-56 484-490 (948)
453 cd07651 F-BAR_PombeCdc15_like 95.8 2.2 4.7E-05 42.3 23.1 162 58-222 58-223 (236)
454 COG3599 DivIVA Cell division i 95.8 2.2 4.7E-05 42.1 21.7 178 47-231 24-211 (212)
455 PF01920 Prefoldin_2: Prefoldi 95.8 0.16 3.5E-06 43.4 11.4 83 147-229 1-102 (106)
456 PF10211 Ax_dynein_light: Axon 95.8 2 4.3E-05 41.5 20.2 156 66-229 32-189 (189)
457 PF15233 SYCE1: Synaptonemal c 95.8 0.87 1.9E-05 41.2 16.0 120 46-170 6-131 (134)
458 PF02403 Seryl_tRNA_N: Seryl-t 95.8 0.36 7.9E-06 41.9 13.7 95 108-202 4-101 (108)
459 PRK12705 hypothetical protein; 95.8 2.6 5.7E-05 46.7 23.3 160 55-219 21-181 (508)
460 PRK06975 bifunctional uroporph 95.8 0.51 1.1E-05 53.9 18.4 151 58-208 344-501 (656)
461 cd07675 F-BAR_FNBP1L The F-BAR 95.8 1.9 4.1E-05 43.6 20.4 160 63-228 69-234 (252)
462 KOG3647 Predicted coiled-coil 95.8 2.4 5.1E-05 43.0 20.5 152 73-227 45-199 (338)
463 COG4913 Uncharacterized protei 95.8 2.2 4.8E-05 48.6 22.3 179 53-232 242-441 (1104)
464 COG4487 Uncharacterized protei 95.7 3.8 8.1E-05 44.3 23.6 181 49-237 27-211 (438)
465 PF05816 TelA: Toxic anion res 95.7 3.2 7E-05 43.4 24.4 180 49-228 112-327 (333)
466 PRK15374 pathogenicity island 95.7 4.4 9.5E-05 44.9 25.0 180 48-231 101-312 (593)
467 COG1322 Predicted nuclease of 95.7 1.5 3.2E-05 47.9 20.7 153 43-199 32-188 (448)
468 PF05266 DUF724: Protein of un 95.7 0.54 1.2E-05 45.5 15.8 123 108-230 52-179 (190)
469 PF02994 Transposase_22: L1 tr 95.7 0.017 3.7E-07 61.3 5.9 155 80-236 36-191 (370)
470 KOG4637 Adaptor for phosphoino 95.7 0.79 1.7E-05 48.2 17.6 168 44-221 115-287 (464)
471 PF15358 TSKS: Testis-specific 95.7 1.9 4.1E-05 46.0 20.5 182 48-229 127-380 (558)
472 PF02050 FliJ: Flagellar FliJ 95.7 0.93 2E-05 38.8 15.9 110 119-228 1-112 (123)
473 PF05335 DUF745: Protein of un 95.7 1.5 3.2E-05 42.4 18.6 126 83-211 62-187 (188)
474 KOG1962 B-cell receptor-associ 95.7 0.13 2.9E-06 50.5 11.4 96 135-231 112-207 (216)
475 PF13094 CENP-Q: CENP-Q, a CEN 95.7 0.089 1.9E-06 49.1 10.0 147 39-185 6-160 (160)
476 PF06548 Kinesin-related: Kine 95.7 4 8.8E-05 44.1 25.4 182 49-230 298-486 (488)
477 KOG3478 Prefoldin subunit 6, K 95.7 0.81 1.8E-05 40.3 14.9 108 120-227 2-114 (120)
478 KOG0811 SNARE protein PEP12/VA 95.6 3.1 6.6E-05 42.5 22.8 185 42-228 13-226 (269)
479 PF08580 KAR9: Yeast cortical 95.6 2.5 5.5E-05 48.5 23.0 168 55-231 93-297 (683)
480 PF02994 Transposase_22: L1 tr 95.6 0.032 7E-07 59.2 7.5 131 76-212 57-188 (370)
481 PF04949 Transcrip_act: Transc 95.6 1.2 2.6E-05 41.3 16.4 116 112-230 30-146 (159)
482 PF13863 DUF4200: Domain of un 95.6 1.1 2.4E-05 39.7 16.3 106 124-229 1-107 (126)
483 cd07595 BAR_RhoGAP_Rich-like T 95.6 2.9 6.2E-05 42.1 20.8 174 49-222 18-231 (244)
484 TIGR02231 conserved hypothetic 95.5 0.1 2.2E-06 57.8 11.5 93 137-229 71-171 (525)
485 KOG0163 Myosin class VI heavy 95.5 1.3 2.9E-05 50.4 19.8 163 50-212 851-1014(1259)
486 PF14817 HAUS5: HAUS augmin-li 95.5 2.2 4.7E-05 48.5 22.0 167 62-229 255-436 (632)
487 PRK12705 hypothetical protein; 95.5 2.6 5.6E-05 46.7 22.0 162 50-221 34-195 (508)
488 KOG0811 SNARE protein PEP12/VA 95.5 2.5 5.4E-05 43.1 20.3 171 50-229 55-234 (269)
489 PF07200 Mod_r: Modifier of ru 95.5 1.7 3.7E-05 39.9 17.8 139 81-222 7-150 (150)
490 cd07653 F-BAR_CIP4-like The F- 95.5 3 6.4E-05 41.5 22.7 161 62-228 67-233 (251)
491 KOG4657 Uncharacterized conser 95.5 1.2 2.7E-05 43.8 17.2 121 84-207 18-143 (246)
492 PF01920 Prefoldin_2: Prefoldi 95.5 0.4 8.6E-06 41.0 12.7 81 133-213 1-100 (106)
493 PF13863 DUF4200: Domain of un 95.5 0.81 1.8E-05 40.6 15.1 104 54-157 1-108 (126)
494 PTZ00446 vacuolar sorting prot 95.5 1.7 3.7E-05 42.2 18.1 151 48-202 22-187 (191)
495 cd07593 BAR_MUG137_fungi The B 95.5 2.5 5.5E-05 41.7 19.7 161 50-210 11-203 (215)
496 PF07889 DUF1664: Protein of u 95.5 0.31 6.7E-06 44.2 12.2 86 69-157 38-123 (126)
497 cd07676 F-BAR_FBP17 The F-BAR 95.5 3.1 6.7E-05 42.0 20.9 161 65-228 72-235 (253)
498 PF10211 Ax_dynein_light: Axon 95.5 2.3 5E-05 41.1 19.1 152 53-208 33-189 (189)
499 PF07106 TBPIP: Tat binding pr 95.5 0.26 5.6E-06 46.4 12.4 87 60-148 72-163 (169)
500 smart00806 AIP3 Actin interact 95.5 4.7 0.0001 43.5 25.0 183 48-230 87-323 (426)
No 1
>PRK11637 AmiB activator; Provisional
Probab=99.07 E-value=8.3e-08 Score=102.95 Aligned_cols=75 Identities=12% Similarity=0.180 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchH---HHHHHHHHHHHHHHHHHHHHH
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS---ERELQMRNLTEKIAKMEAELK 123 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~a---e~E~eL~eL~eki~kLEaEL~ 123 (504)
..++++|..++.+|+.++.++..+..++..+..+|..+..+|..+...|..+.. +.+.+|..++++|.++++++.
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777766666666666666666666666655555555544221 234444444444444444443
No 2
>PRK11637 AmiB activator; Provisional
Probab=99.02 E-value=1.2e-07 Score=101.72 Aligned_cols=78 Identities=15% Similarity=0.218 Sum_probs=52.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchH---HHHHHHHHHHHHHHHHHHHH
Q 010679 46 PPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS---ERELQMRNLTEKIAKMEAEL 122 (504)
Q Consensus 46 p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~a---e~E~eL~eL~eki~kLEaEL 122 (504)
=....++++|..+..+|..+..++..+..++..+..+|..++.+|..++.+|..+.. .++.+|..+++++.+.+..+
T Consensus 47 ~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 47 DQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777777777777777777666666666666666655443 35667777777777766666
Q ss_pred H
Q 010679 123 K 123 (504)
Q Consensus 123 ~ 123 (504)
.
T Consensus 127 ~ 127 (428)
T PRK11637 127 A 127 (428)
T ss_pred H
Confidence 5
No 3
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=99.01 E-value=1.3e-07 Score=106.56 Aligned_cols=183 Identities=16% Similarity=0.268 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhccchH----------HHHHHHHHH
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATH-------GTLRQELAAAQHELQILHGQIGGMKS----------ERELQMRNL 111 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi-------~~LkqELa~lqqEL~~L~~~L~~l~a----------e~E~eL~eL 111 (504)
..||.+|..++.||+.....-++|..++ ..++.+|..++.+.+.|+..+..+.. .+|.+|.+.
T Consensus 421 ~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE 500 (697)
T PF09726_consen 421 SRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEE 500 (697)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888876655555555442 34555666666666666665554332 234445555
Q ss_pred HHHHHHHHHHHHHHh--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 112 TEKIAKMEAELKTAE--------------------------PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT 165 (504)
Q Consensus 112 ~eki~kLEaEL~ele--------------------------~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~ 165 (504)
+.....+|++|.+.. .++....+|+.|+.+|+.++...+.++..|+.+++.++.
T Consensus 501 ~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 501 RRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555554221 123334445555555555555555555555555544433
Q ss_pred h----hhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679 166 D----VQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLES-------LQVMEKNYITMATEVEKLRAELMNAPN 231 (504)
Q Consensus 166 e----lqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eq-------lqemek~L~sme~EiekLraELekle~ 231 (504)
. ...++.|...|.+++.+-.+|+..|..+.+-+.+|-.. ++.++..+.+.++||..|+++|+.+..
T Consensus 581 ~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a 657 (697)
T PF09726_consen 581 YEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA 657 (697)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 22355666677777788888887777776665555544 444455555678888888888887654
No 4
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=98.99 E-value=1.3e-07 Score=97.50 Aligned_cols=50 Identities=12% Similarity=0.145 Sum_probs=27.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679 182 QEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 231 (504)
Q Consensus 182 qELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~ 231 (504)
++++.....+......+..-.+++++-+.+++.++.+...|+.|++.+++
T Consensus 231 q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~ 280 (499)
T COG4372 231 QAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEA 280 (499)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444555666666666666666666666666654
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.92 E-value=3.5e-07 Score=108.18 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010679 51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI 97 (504)
Q Consensus 51 LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L 97 (504)
++.++..+..++..+..++.++..++..++.++..+..++..+...+
T Consensus 292 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~ 338 (1164)
T TIGR02169 292 VKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEI 338 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555444444444444444444433
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.91 E-value=3.8e-07 Score=107.95 Aligned_cols=12 Identities=33% Similarity=0.523 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 010679 214 TMATEVEKLRAE 225 (504)
Q Consensus 214 sme~EiekLraE 225 (504)
.+..++.+++.+
T Consensus 480 ~l~~~l~~l~~~ 491 (1164)
T TIGR02169 480 RVEKELSKLQRE 491 (1164)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 7
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.89 E-value=1.2e-06 Score=89.70 Aligned_cols=117 Identities=21% Similarity=0.350 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhhccch---HHHHHHHHHHHHHHH
Q 010679 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQEL--------AAAQHELQILHGQIGGMK---SERELQMRNLTEKIA 116 (504)
Q Consensus 48 ~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqEL--------a~lqqEL~~L~~~L~~l~---ae~E~eL~eL~eki~ 116 (504)
...|+.+|....++++.|+.+|..|..+|..++... .....+|..++..|..+. +.++.++..+...+.
T Consensus 6 L~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~ 85 (312)
T PF00038_consen 6 LQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELE 85 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHH
Confidence 357899999999999999999999999998887762 234556666666655432 234445555555555
Q ss_pred HHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 117 KMEAEL----KTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAH 164 (504)
Q Consensus 117 kLEaEL----~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~ 164 (504)
.++..+ .....++.++..++.++.+....+.+|+.+++.|+.+|..++
T Consensus 86 ~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~ 137 (312)
T PF00038_consen 86 DLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLK 137 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 444433 344567777788888888888888888888888877776443
No 8
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.89 E-value=6.3e-07 Score=97.50 Aligned_cols=52 Identities=19% Similarity=0.334 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010679 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG 99 (504)
Q Consensus 48 ~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~ 99 (504)
-..++.+|+.+..+...|...+..|+.+...|+.++..++.+|...+.+...
T Consensus 138 a~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~ 189 (546)
T PF07888_consen 138 AQLLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQ 189 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777777777777777777766666666665544
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.89 E-value=5.5e-07 Score=106.28 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATHGTL 79 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~L 79 (504)
..++.++..+..+++.+..++..+..++..+
T Consensus 701 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 731 (1179)
T TIGR02168 701 AELRKELEELEEELEQLRKELEELSRQISAL 731 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333333333333
No 10
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=98.89 E-value=2.9e-06 Score=89.79 Aligned_cols=72 Identities=14% Similarity=0.257 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchH---HHHHHHHHHHHHHHHHHHH
Q 010679 50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS---ERELQMRNLTEKIAKMEAE 121 (504)
Q Consensus 50 ~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~a---e~E~eL~eL~eki~kLEaE 121 (504)
..+++|.....+|..++..+.....+...|+.+|..++.++..+..+|.+... ++++.|..+...+.+++.+
T Consensus 35 a~~~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q 109 (420)
T COG4942 35 ADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ 109 (420)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 33345555555555555555544444445555555555554444444433221 2344455555555444443
No 11
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.88 E-value=4.8e-07 Score=98.39 Aligned_cols=76 Identities=16% Similarity=0.288 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhhccc---hHHHHHHHHHHHHHHH
Q 010679 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELA--------AAQHELQILHGQIGGM---KSERELQMRNLTEKIA 116 (504)
Q Consensus 48 ~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa--------~lqqEL~~L~~~L~~l---~ae~E~eL~eL~eki~ 116 (504)
+..|+.+|....+++.+|+.+|.+|..++..|+.-.. -...||..+...|++. .+.++.+|..|.+++.
T Consensus 44 l~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~ 123 (546)
T KOG0977|consen 44 LQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELK 123 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3667888888889999999999999999988876432 1233444444444332 2234555555555555
Q ss_pred HHHHHHH
Q 010679 117 KMEAELK 123 (504)
Q Consensus 117 kLEaEL~ 123 (504)
+++..+.
T Consensus 124 elr~~~~ 130 (546)
T KOG0977|consen 124 ELRKKLE 130 (546)
T ss_pred HHHHHHH
Confidence 5544443
No 12
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.85 E-value=1.2e-06 Score=95.28 Aligned_cols=51 Identities=22% Similarity=0.226 Sum_probs=27.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010679 46 PPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQ 96 (504)
Q Consensus 46 p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~ 96 (504)
-..+.++++.+.+..+...|+.++..|..++..|+.+|...+++...|...
T Consensus 143 ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~ 193 (546)
T PF07888_consen 143 NQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQ 193 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555544444444433
No 13
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.82 E-value=1.3e-06 Score=103.26 Aligned_cols=42 Identities=21% Similarity=0.287 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHEL 90 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL 90 (504)
..++.++..+..++..+..++..+..++..++.++..++.++
T Consensus 673 ~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~ 714 (1179)
T TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEEL 714 (1179)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555554444444444444333333
No 14
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=98.81 E-value=3e-06 Score=89.67 Aligned_cols=51 Identities=14% Similarity=0.236 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010679 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG 98 (504)
Q Consensus 48 ~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~ 98 (504)
...++.+|+.+..+|.....+.++|+.++..++.++..+..+|.+....+.
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~ 90 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLK 90 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 345555555555555555555555555555555555544444444444433
No 15
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.77 E-value=2.3e-06 Score=94.29 Aligned_cols=15 Identities=20% Similarity=0.350 Sum_probs=7.6
Q ss_pred CCCCCCCCCCCCCCCC
Q 010679 27 FVSGMRPPMPGAFPPF 42 (504)
Q Consensus 27 ~~~~~~~~~~~~~~~~ 42 (504)
|-..+.+| .|.|-+|
T Consensus 130 f~~~v~l~-q~~f~~f 144 (562)
T PHA02562 130 FKQIVVLG-TAGYVPF 144 (562)
T ss_pred HhHHheec-cCchhhH
Confidence 43333334 6666665
No 16
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.75 E-value=2.1e-06 Score=94.58 Aligned_cols=41 Identities=15% Similarity=0.187 Sum_probs=16.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 185 HHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAE 225 (504)
Q Consensus 185 q~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraE 225 (504)
..++.+++.++....++.+++.+++.++..+..++.++..+
T Consensus 361 ~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke 401 (562)
T PHA02562 361 KKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKE 401 (562)
T ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334444444444444443333333
No 17
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.75 E-value=2.5e-06 Score=97.97 Aligned_cols=103 Identities=16% Similarity=0.217 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h----hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 010679 129 KLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDV-Q----QIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLE 203 (504)
Q Consensus 129 kaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~el-q----ql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~e 203 (504)
+.+..+++.++....+.+.+++..+..|+..|..++.+. + ++.+...+++.|+.|++.++..+..++.+..++.+
T Consensus 350 ~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~ 429 (1074)
T KOG0250|consen 350 RREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKE 429 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444555554444443332 1 12333344555555555555555555555555555
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHhccc
Q 010679 204 SLQVMEKNYIT-------MATEVEKLRAELMNAPN 231 (504)
Q Consensus 204 qlqemek~L~s-------me~EiekLraELekle~ 231 (504)
.+.+.++++.. +.+.|+....+|..|++
T Consensus 430 ~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 430 KAKEEEEEKEHIEGEILQLRKKIENISEELKDLKK 464 (1074)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555544 44444444444544443
No 18
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.74 E-value=1.6e-06 Score=99.58 Aligned_cols=58 Identities=14% Similarity=0.203 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010679 175 SELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNV 232 (504)
Q Consensus 175 ~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~~ 232 (504)
.++..++.+|.++..++....+.+..+.+..+.+..++..+.++++.++..+...+.+
T Consensus 542 ~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~ 599 (1293)
T KOG0996|consen 542 TELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSR 599 (1293)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3344444455555445444445555555555555555555555555555555544443
No 19
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.72 E-value=2.3e-06 Score=96.67 Aligned_cols=177 Identities=20% Similarity=0.265 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch---HHHHHHHHHHHHHHHHHHHHHH---
Q 010679 50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMK---SERELQMRNLTEKIAKMEAELK--- 123 (504)
Q Consensus 50 ~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~---ae~E~eL~eL~eki~kLEaEL~--- 123 (504)
.+.++|+.+..++|+++.+...+..++..|++++..++.+...+++.+.-.. ..+...+..+.+....+++++.
T Consensus 696 ~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el~sel 775 (1200)
T KOG0964|consen 696 DIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFESELGSEL 775 (1200)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHH
Confidence 3445555566666666666666666667777777777777666666654321 2233344444444444555443
Q ss_pred ----------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhhhHHHHHHHH-----HHHHHHHH
Q 010679 124 ----------TAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQ-RAHTDVQQIPALLSELES-----LRQEYHHC 187 (504)
Q Consensus 124 ----------ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq-~l~~elqql~~L~~EIea-----LrqELq~L 187 (504)
.+..|..+|..+..++..+..++.++...+..|+..|. +|..... .+.++|.. ++.++..+
T Consensus 776 ~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l~~kL~~r~~---~l~~ei~~~~d~~~~~el~~~ 852 (1200)
T KOG0964|consen 776 FSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEANLNTKLYKRVN---ELEQEIGDLNDSSRRSELELE 852 (1200)
T ss_pred HhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHhhhcccccchhhhhHH
Confidence 33456677777777777777777777777777777664 2222222 12222211 22334444
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010679 188 RGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 229 (504)
Q Consensus 188 R~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekl 229 (504)
..+++.+.+.++....++..++..++....++..++.+++++
T Consensus 853 ~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~ 894 (1200)
T KOG0964|consen 853 KSELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKA 894 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444443
No 20
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.71 E-value=2.9e-06 Score=92.40 Aligned_cols=104 Identities=24% Similarity=0.333 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---chHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHH
Q 010679 61 EMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG---MKSERELQMRNLTEKIAKMEAELKTAE----PVKLEFQ 133 (504)
Q Consensus 61 EIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~---l~ae~E~eL~eL~eki~kLEaEL~ele----~LkaELe 133 (504)
+...++.++.+|..++..++..+..+.+.+....+.+.. ..++++.++..++.++..|+.++..+. .|..+|.
T Consensus 107 ~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~ 186 (546)
T KOG0977|consen 107 ERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELA 186 (546)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 334444444555555555555555444444444444432 234567777778888888888776543 6777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 134 KSKTEAQNLVVAREELIAKVHQLTQDLQRAH 164 (504)
Q Consensus 134 qLr~ELqeL~aerqeL~aqvq~L~~ELq~l~ 164 (504)
.++.++.+....+.+++.+++.|.++|..+.
T Consensus 187 ~~r~~ld~Etllr~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 187 RARKQLDDETLLRVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 8888888888888889999999999987554
No 21
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.70 E-value=3e-06 Score=84.23 Aligned_cols=49 Identities=10% Similarity=0.245 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI 97 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L 97 (504)
..++.+|+....++..+...+.........+..++..++++|..+...+
T Consensus 4 ~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~l 52 (237)
T PF00261_consen 4 QQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEEL 52 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555554444444444444444444444444444443
No 22
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.68 E-value=2.9e-06 Score=97.51 Aligned_cols=36 Identities=14% Similarity=0.191 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010679 61 EMQKLATENQRLAATHGTLRQELAAAQHELQILHGQ 96 (504)
Q Consensus 61 EIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~ 96 (504)
++..+..+.+.++.+...+++.|..+.+.+..+.++
T Consensus 385 ~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke 420 (1293)
T KOG0996|consen 385 KFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKE 420 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444433333333333
No 23
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.68 E-value=4.2e-06 Score=100.15 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHh
Q 010679 213 ITMATEVEKLRAELMN 228 (504)
Q Consensus 213 ~sme~EiekLraELek 228 (504)
..+..+++.++..+..
T Consensus 477 ~~~~~~l~~~~~~~~~ 492 (1163)
T COG1196 477 QRLEKELSSLEARLDR 492 (1163)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 24
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=98.67 E-value=1.9e-05 Score=81.78 Aligned_cols=190 Identities=16% Similarity=0.227 Sum_probs=92.4
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-------chH---HHH
Q 010679 36 PGAFPPFDMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG-------MKS---ERE 105 (504)
Q Consensus 36 ~~~~~~~~~~p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~-------l~a---e~E 105 (504)
-|.|--=|+.|++..+..+|.....+....+.+.+....++...++|-+..++++..++..+.+ +.+ +++
T Consensus 71 ~gVfqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lq 150 (499)
T COG4372 71 SGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQ 150 (499)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566333666777777666666666665555544444444444433333333333333333222 111 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHH-------HHHHH---HHHHHHHHHHHHHHhhhhhh
Q 010679 106 LQMRNLTEKIAKMEAELKTAEP----VKLEFQKSKTEAQNLVVAR-------EELIA---KVHQLTQDLQRAHTDVQQIP 171 (504)
Q Consensus 106 ~eL~eL~eki~kLEaEL~ele~----LkaELeqLr~ELqeL~aer-------qeL~a---qvq~L~~ELq~l~~elqql~ 171 (504)
.++..|.++..++++++..+.. |.....+|+.+..+|...- ++|.. .++.++.+|.+.... ..
T Consensus 151 trl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~aa---~Q 227 (499)
T COG4372 151 TRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAA---AQ 227 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 4444455554555544433221 1111122222222222222 12211 122222222222211 22
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 172 ALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 172 ~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELek 228 (504)
...++|..+-..++.+..++..-...+.+-+++++.+|.++..+++|+++|++-...
T Consensus 228 q~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~yyQ~ 284 (499)
T COG4372 228 QTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQA 284 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666666666666666666667777788888888888888888888765443
No 25
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.66 E-value=3.4e-06 Score=95.68 Aligned_cols=43 Identities=12% Similarity=0.030 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Q 010679 195 KKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRAA 237 (504)
Q Consensus 195 kk~~~el~eqlqemek~L~sme~EiekLraELekle~~~~~~~ 237 (504)
..++...+..++.++..+..+..+-..++.+++++.+.+.|-.
T Consensus 898 ~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~ 940 (1174)
T KOG0933|consen 898 LSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIG 940 (1174)
T ss_pred HHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchh
Confidence 3334444445677777788888888888888999988898854
No 26
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.66 E-value=6e-06 Score=98.89 Aligned_cols=53 Identities=26% Similarity=0.313 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 176 ELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 176 EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELek 228 (504)
+++.++.++..+...+...+....++.+++.+++..+..+..++++++..+..
T Consensus 864 ~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 916 (1163)
T COG1196 864 ELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEE 916 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444455555555555555555555554444443
No 27
>PRK02224 chromosome segregation protein; Provisional
Probab=98.65 E-value=4.9e-06 Score=96.68 Aligned_cols=13 Identities=23% Similarity=0.281 Sum_probs=5.3
Q ss_pred CCCCCCCCCCCCCC
Q 010679 26 PFVSGMRPPMPGAF 39 (504)
Q Consensus 26 ~~~~~~~~~~~~~~ 39 (504)
.|-..+--| +|=|
T Consensus 128 ~f~~~~~i~-Qge~ 140 (880)
T PRK02224 128 AFVNCAYVR-QGEV 140 (880)
T ss_pred HhcceeEee-ccCh
Confidence 444433333 5544
No 28
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.63 E-value=7.3e-06 Score=100.04 Aligned_cols=29 Identities=24% Similarity=0.292 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 200 DHLESLQVMEKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 200 el~eqlqemek~L~sme~EiekLraELek 228 (504)
.....+..++++...+..+++.|+.+|+.
T Consensus 1115 ~er~~r~K~ek~r~dL~~ele~l~~~Lee 1143 (1930)
T KOG0161|consen 1115 AERASRAKAERQRRDLSEELEELKEELEE 1143 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444443
No 29
>PRK03918 chromosome segregation protein; Provisional
Probab=98.63 E-value=1e-05 Score=93.85 Aligned_cols=37 Identities=30% Similarity=0.465 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 010679 107 QMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLV 143 (504)
Q Consensus 107 eL~eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL~ 143 (504)
++..+.+.+..++.++..++....+++.++.++..+.
T Consensus 215 e~~~l~~~~~~~~~~l~~l~~~~~~~~~l~~~~~~l~ 251 (880)
T PRK03918 215 ELPELREELEKLEKEVKELEELKEEIEELEKELESLE 251 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333333333333333333333
No 30
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.63 E-value=1.7e-05 Score=78.91 Aligned_cols=179 Identities=13% Similarity=0.238 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchH-----------------HHHHHHHHH
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS-----------------ERELQMRNL 111 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~a-----------------e~E~eL~eL 111 (504)
...++++..+..++.........+..++..|...|..+..+|.+....+..... .++......
T Consensus 11 d~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~ 90 (237)
T PF00261_consen 11 DEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSD 90 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 345556666666666666666666666666666666655555555544433211 112222233
Q ss_pred HHHHHHHHHHHHHHh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----------
Q 010679 112 TEKIAKMEAELKTAE-----------PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI---------- 170 (504)
Q Consensus 112 ~eki~kLEaEL~ele-----------~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql---------- 170 (504)
.++|..|+.+++.+. .+...|..+..+|..+......+..++..|+.+|..+...++.+
T Consensus 91 eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~r 170 (237)
T PF00261_consen 91 EERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASER 170 (237)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Confidence 334444444443222 11122333444444444444444444444444444333333222
Q ss_pred -hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 171 -PALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 227 (504)
Q Consensus 171 -~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELe 227 (504)
..+...|..|...|..+....+.....+..|..++..++..|.....+...++.+|+
T Consensus 171 e~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld 228 (237)
T PF00261_consen 171 EDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELD 228 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122233444444444444444444444444545555555555555555555555543
No 31
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.62 E-value=1e-05 Score=92.98 Aligned_cols=38 Identities=8% Similarity=0.289 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT 165 (504)
Q Consensus 128 LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~ 165 (504)
...|++.+++.+..+..+..+++.++......+++++.
T Consensus 335 ~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~ 372 (1074)
T KOG0250|consen 335 QDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKK 372 (1074)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444443
No 32
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=98.62 E-value=2.9e-05 Score=74.06 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010679 197 FYNDHLESLQVMEKNYITMATEVEKLRAELMNA 229 (504)
Q Consensus 197 ~~~el~eqlqemek~L~sme~EiekLraELekl 229 (504)
.+.+...++.++..-++....-.+.|+.++.+|
T Consensus 152 ~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~L 184 (193)
T PF14662_consen 152 ILSERTQQIEELKKTIEEYRSITEELRLEKSRL 184 (193)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444443
No 33
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.62 E-value=5.9e-06 Score=100.04 Aligned_cols=56 Identities=23% Similarity=0.332 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 106 LQMRNLTEKIAKMEAELK------TAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQ 161 (504)
Q Consensus 106 ~eL~eL~eki~kLEaEL~------ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq 161 (504)
.++..+..+|..++.++. .++.+..++..++.++..+..++..+..+.+.++.+|.
T Consensus 799 ~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~ 860 (1311)
T TIGR00606 799 MELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQ 860 (1311)
T ss_pred HHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433 12234444444444444443333333333333333333
No 34
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.62 E-value=1.5e-05 Score=89.49 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAH 164 (504)
Q Consensus 128 LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~ 164 (504)
+..|++.++.|+.+|...+..|..+++.++..|..++
T Consensus 401 ~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlk 437 (1243)
T KOG0971|consen 401 LQKELEKKNSELEELRRQKERLSRELDQAESTIADLK 437 (1243)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555554433
No 35
>PRK02224 chromosome segregation protein; Provisional
Probab=98.61 E-value=1.2e-05 Score=93.35 Aligned_cols=34 Identities=15% Similarity=0.152 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 195 KKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 195 kk~~~el~eqlqemek~L~sme~EiekLraELek 228 (504)
+..+..+.+++.+++.++..++.++..++.+++.
T Consensus 362 ~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~e 395 (880)
T PRK02224 362 REEAAELESELEEAREAVEDRREEIEELEEEIEE 395 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444444444443
No 36
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.61 E-value=1.1e-05 Score=98.46 Aligned_cols=47 Identities=11% Similarity=0.127 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 173 LLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEV 219 (504)
Q Consensus 173 L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~Ei 219 (504)
+...|..|...+.+|..+++.++.....++.+..++...++.+..++
T Consensus 1095 l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~L 1141 (1930)
T KOG0161|consen 1095 LQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEEL 1141 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555544444444443333
No 37
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.61 E-value=1.3e-05 Score=90.07 Aligned_cols=19 Identities=5% Similarity=0.239 Sum_probs=14.3
Q ss_pred CCCCChHHHHHHHHHHHHH
Q 010679 43 DMMPPPEVMEQKIASQHVE 61 (504)
Q Consensus 43 ~~~p~~~~LEqeLe~~~eE 61 (504)
++-++...|.++|+.++.+
T Consensus 228 eLr~QvrdLtEkLetlR~k 246 (1243)
T KOG0971|consen 228 ELRAQVRDLTEKLETLRLK 246 (1243)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3447789999999987654
No 38
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.60 E-value=1.4e-05 Score=90.89 Aligned_cols=54 Identities=22% Similarity=0.334 Sum_probs=38.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhcc
Q 010679 46 PPPEVMEQKIASQHVEMQKLATENQRLAA---THGTLRQELAAAQHELQILHGQIGG 99 (504)
Q Consensus 46 p~~~~LEqeLe~~~eEIq~Le~e~qrLe~---qi~~LkqELa~lqqEL~~L~~~L~~ 99 (504)
.....++.+|...+.++..++.+++.|+. ....|+++|+....++..+...+++
T Consensus 677 ~~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~ 733 (1174)
T KOG0933|consen 677 QKLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQ 733 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34456777888888888888877766654 4556778888777777777776654
No 39
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.57 E-value=2.3e-05 Score=86.37 Aligned_cols=40 Identities=23% Similarity=0.400 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTD 166 (504)
Q Consensus 127 ~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~e 166 (504)
.|+.||+..+.++..++.........+..|..+|.+++.+
T Consensus 313 sL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~e 352 (522)
T PF05701_consen 313 SLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSE 352 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHH
Confidence 4455555555555555554444444555555555444443
No 40
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=98.57 E-value=1.7e-05 Score=78.74 Aligned_cols=18 Identities=28% Similarity=0.582 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010679 105 ELQMRNLTEKIAKMEAEL 122 (504)
Q Consensus 105 E~eL~eL~eki~kLEaEL 122 (504)
+.+|+.+.+++.+.+..+
T Consensus 65 e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 65 ESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 41
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=98.57 E-value=2.6e-05 Score=77.37 Aligned_cols=59 Identities=27% Similarity=0.511 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 62 MQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKT 124 (504)
Q Consensus 62 Iq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~e 124 (504)
|+.|..++.+|+..+......|..++.++.+++..+.. ++.++..|..++..++.++.+
T Consensus 12 iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~----~~~e~e~le~qv~~~e~ei~~ 70 (239)
T COG1579 12 IQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEA----LEIELEDLENQVSQLESEIQE 70 (239)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555444 333444444444444444443
No 42
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=1.3e-05 Score=88.82 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 010679 177 LESLRQEYHHCRGTYEYEKKFYNDHLES 204 (504)
Q Consensus 177 IeaLrqELq~LR~eLe~~kk~~~el~eq 204 (504)
+++|..|.+...++++..+..+.++++.
T Consensus 551 ldelskE~esk~~eidi~n~qlkelk~~ 578 (1118)
T KOG1029|consen 551 LDELSKETESKLNEIDIFNNQLKELKED 578 (1118)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4444444444444444444444444443
No 43
>PRK03918 chromosome segregation protein; Provisional
Probab=98.57 E-value=2.2e-05 Score=91.19 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 106 LQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAK 152 (504)
Q Consensus 106 ~eL~eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aq 152 (504)
.++..+...+..++.....++.++.++..+..++..+...+.++..+
T Consensus 221 ~~~~~~~~~l~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~e 267 (880)
T PRK03918 221 EELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEER 267 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443333333333333333333
No 44
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=1.2e-05 Score=89.01 Aligned_cols=21 Identities=14% Similarity=0.368 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010679 103 ERELQMRNLTEKIAKMEAELK 123 (504)
Q Consensus 103 e~E~eL~eL~eki~kLEaEL~ 123 (504)
.++.++..|..++.+|...|.
T Consensus 441 ql~~eletLn~k~qqls~kl~ 461 (1118)
T KOG1029|consen 441 QLQQELETLNFKLQQLSGKLQ 461 (1118)
T ss_pred HHHHHHHHHHHHHHHHhhhhh
Confidence 345566666666666666554
No 45
>PRK09039 hypothetical protein; Validated
Probab=98.53 E-value=1.2e-05 Score=84.21 Aligned_cols=57 Identities=12% Similarity=0.239 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 010679 170 IPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITM----ATEVEKLRAEL 226 (504)
Q Consensus 170 l~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sm----e~EiekLraEL 226 (504)
+..|+++|++|+.+|..++.+|+..++...+.+.++.+++..|+.+ ..++++++.++
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~ 199 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4455556666666666666666666666666666666665555543 34566666666
No 46
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=98.48 E-value=0.0001 Score=70.44 Aligned_cols=33 Identities=9% Similarity=0.113 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 196 KFYNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 196 k~~~el~eqlqemek~L~sme~EiekLraELek 228 (504)
..+.++..-+.+...-...++.|+.+|+..|..
T Consensus 158 ~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~q 190 (193)
T PF14662_consen 158 QQIEELKKTIEEYRSITEELRLEKSRLEEQLSQ 190 (193)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444445556666666665543
No 47
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.48 E-value=0.00014 Score=73.11 Aligned_cols=52 Identities=13% Similarity=0.210 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010679 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG 99 (504)
Q Consensus 48 ~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~ 99 (504)
+..-+.+|..++.+...++.+++.|..++.++..++..++.++..++.+|..
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~ 84 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKK 84 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555555555555555554444443
No 48
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.48 E-value=0.00015 Score=74.43 Aligned_cols=42 Identities=21% Similarity=0.394 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHEL 90 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL 90 (504)
..++.+|..++..|..+..++.+|..++..++.++..++.++
T Consensus 50 ~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~ 91 (312)
T PF00038_consen 50 EMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKY 91 (312)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHH
Confidence 456777777777777776666666666666666555544433
No 49
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.48 E-value=2.4e-05 Score=84.83 Aligned_cols=120 Identities=12% Similarity=0.132 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 010679 107 QMRNLTEKIAKMEAELKTAE----PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQ 182 (504)
Q Consensus 107 eL~eL~eki~kLEaEL~ele----~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrq 182 (504)
..+.|+..+.++++-+..++ .+...|+.++.+++....+++.|+.+++.|...|....--..+++.+..|.++|.+
T Consensus 267 ~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r 346 (581)
T KOG0995|consen 267 KKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKR 346 (581)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 33444444444444333322 34445555666666666666666666666666655432223445666677777777
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 183 EYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 226 (504)
Q Consensus 183 ELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraEL 226 (504)
++.++..+++.+.+..-++..++++.-++++++-.++.++..+|
T Consensus 347 ~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i 390 (581)
T KOG0995|consen 347 ELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRI 390 (581)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777766666666555555555555555554444
No 50
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.47 E-value=4.9e-05 Score=92.32 Aligned_cols=43 Identities=12% Similarity=-0.024 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010679 57 SQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG 99 (504)
Q Consensus 57 ~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~ 99 (504)
..+.++.....++.+.+..+..+...+..+..++..|+.++++
T Consensus 290 g~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEk 332 (1486)
T PRK04863 290 ELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQA 332 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444445455554444433
No 51
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=98.47 E-value=0.00012 Score=72.37 Aligned_cols=22 Identities=18% Similarity=0.364 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010679 102 SERELQMRNLTEKIAKMEAELK 123 (504)
Q Consensus 102 ae~E~eL~eL~eki~kLEaEL~ 123 (504)
+.++++++++...|..|++.+.
T Consensus 139 A~kEQEmqe~~sqi~~lK~qq~ 160 (330)
T KOG2991|consen 139 ATKEQEMQECTSQIQYLKQQQQ 160 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHhhC
Confidence 3478888888888888887654
No 52
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.46 E-value=3.7e-05 Score=93.32 Aligned_cols=36 Identities=6% Similarity=0.084 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 54 KIASQHVEMQKLATENQRLAATHGTLRQELAAAQHE 89 (504)
Q Consensus 54 eLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqE 89 (504)
++.....+|...+..+.++...+.++..+|..++.+
T Consensus 294 rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQ 329 (1486)
T PRK04863 294 ELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQD 329 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333
No 53
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.45 E-value=7.7e-05 Score=82.31 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010679 206 QVMEKNYITMATEVEKLRAE 225 (504)
Q Consensus 206 qemek~L~sme~EiekLraE 225 (504)
.+|...|+.+..|.+.++.+
T Consensus 368 ~~l~~~Lqql~~Eae~Ak~e 387 (522)
T PF05701_consen 368 SELPKALQQLSSEAEEAKKE 387 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 54
>PRK09039 hypothetical protein; Validated
Probab=98.45 E-value=5e-05 Score=79.57 Aligned_cols=49 Identities=16% Similarity=0.237 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010679 50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG 98 (504)
Q Consensus 50 ~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~ 98 (504)
-|.++|+...+++..|+.++..|.+.+.--+.....++.+|..++.++.
T Consensus 43 fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~ 91 (343)
T PRK09039 43 FLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLS 91 (343)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3456666666666666666555555444444444445555555544443
No 55
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.45 E-value=2.5e-05 Score=88.43 Aligned_cols=20 Identities=15% Similarity=0.336 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 010679 149 LIAKVHQLTQDLQRAHTDVQ 168 (504)
Q Consensus 149 L~aqvq~L~~ELq~l~~elq 168 (504)
+..++++|+.|+.+|+.|++
T Consensus 543 ~r~r~~~lE~E~~~lr~elk 562 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELK 562 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555544443
No 56
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=98.44 E-value=0.00018 Score=73.02 Aligned_cols=82 Identities=18% Similarity=0.283 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 010679 132 FQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ----QIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQV 207 (504)
Q Consensus 132 LeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elq----ql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqe 207 (504)
+..+.+++..+.....++..+++.|..+++....++- .+.+++.+++.+..++..+...++.+...+..+...+.+
T Consensus 160 ~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre 239 (294)
T COG1340 160 LKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRE 239 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444443333321 123344444444444444444444444444444444444
Q ss_pred HHHHHH
Q 010679 208 MEKNYI 213 (504)
Q Consensus 208 mek~L~ 213 (504)
+++.+.
T Consensus 240 ~~k~ik 245 (294)
T COG1340 240 LEKKIK 245 (294)
T ss_pred HHHHHH
Confidence 444333
No 57
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=0.00013 Score=78.70 Aligned_cols=60 Identities=20% Similarity=0.238 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH---HHHHHHHHhccccc
Q 010679 174 LSELESLRQEYHHCRGTYEYEKKFYNDHLESL----QVMEKNYITMATEV---EKLRAELMNAPNVD 233 (504)
Q Consensus 174 ~~EIeaLrqELq~LR~eLe~~kk~~~el~eql----qemek~L~sme~Ei---ekLraELekle~~~ 233 (504)
+-|.+.|+.|+.++..+++.++..+++...-. +.|++.|..+..|. -.|++||+...+.+
T Consensus 193 QVEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk~alkkEL~q~~n~e 259 (772)
T KOG0999|consen 193 QVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQKNALKKELSQYRNAE 259 (772)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcchh
Confidence 44567778888888888888877766554322 22555555555544 45778888776644
No 58
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=98.41 E-value=7.5e-05 Score=84.41 Aligned_cols=45 Identities=27% Similarity=0.364 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHG 95 (504)
Q Consensus 51 LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~ 95 (504)
+..+++.+..++..+..+.+.+..++..++.+++.++.++..++.
T Consensus 207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555544444444444
No 59
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=98.39 E-value=0.00016 Score=73.55 Aligned_cols=48 Identities=17% Similarity=0.284 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 178 ESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAE 225 (504)
Q Consensus 178 eaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraE 225 (504)
+.++.+.+.+-.++....+...++.+.+..+.+.|..+.+.|..|+..
T Consensus 203 De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~ 250 (294)
T COG1340 203 DELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAK 250 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333344444444444444444444444444433
No 60
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=98.38 E-value=0.00012 Score=79.32 Aligned_cols=33 Identities=9% Similarity=0.070 Sum_probs=24.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 46 PPPEVMEQKIASQHVEMQKLATENQRLAATHGT 78 (504)
Q Consensus 46 p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~ 78 (504)
..+..++.++..++.++..+..+..+|.+.+..
T Consensus 90 ld~~~~~~~~~~~~~~~~~~~~~~~rL~a~~~~ 122 (457)
T TIGR01000 90 YDNGNEENQKQLLEQQLDNLKDQKKSLDTLKQS 122 (457)
T ss_pred ECchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677788888888888888888887776654
No 61
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=98.37 E-value=2.7e-05 Score=80.87 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Q 010679 108 MRNLTEKIAKMEAELKTAEPVKL 130 (504)
Q Consensus 108 L~eL~eki~kLEaEL~ele~Lka 130 (504)
+..|.++...|+.++..++.+..
T Consensus 179 ~~~l~~~~~~L~~e~~~Lk~~~~ 201 (325)
T PF08317_consen 179 LPKLRERKAELEEELENLKQLVE 201 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444443333
No 62
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.36 E-value=0.00012 Score=81.50 Aligned_cols=37 Identities=19% Similarity=0.216 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 54 KIASQHVEMQKLATENQRLAATHGTLRQELAAAQHEL 90 (504)
Q Consensus 54 eLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL 90 (504)
+|.+++.+++.++.+.+.|++.+..++.+|...+-+|
T Consensus 107 QiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etel 143 (1265)
T KOG0976|consen 107 QIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEI 143 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444433333333333
No 63
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.34 E-value=3.2e-05 Score=87.96 Aligned_cols=159 Identities=16% Similarity=0.209 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHH----H
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK----T 124 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~----e 124 (504)
..|+.+|+.++.+|..|+.++..-...+..|+++|+.++.|+..++.++.++..+.. ..+.-.++++.+-.... .
T Consensus 173 ~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~-ra~~yrdeldalre~aer~d~~ 251 (1195)
T KOG4643|consen 173 LHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAH-RADRYRDELDALREQAERPDTT 251 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHhhhcCCCc
Confidence 457778888888888888888777777788888888888888888777766544311 11111111111111111 1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 010679 125 AEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLES 204 (504)
Q Consensus 125 le~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eq 204 (504)
......+++-++..+++++..-..|..+.+.|+.+|++++.+... ..+..+|-.+++.+..++.+.+..+.+.++|.++
T Consensus 252 ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~-~tleseiiqlkqkl~dm~~erdtdr~kteeL~eE 330 (1195)
T KOG4643|consen 252 YKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEG-ATLESEIIQLKQKLDDMRSERDTDRHKTEELHEE 330 (1195)
T ss_pred cchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccc-CChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 123334455566666677777677777777888888777765433 3445555555666666655555555555555555
Q ss_pred HHHHH
Q 010679 205 LQVME 209 (504)
Q Consensus 205 lqeme 209 (504)
...|+
T Consensus 331 nstLq 335 (1195)
T KOG4643|consen 331 NSTLQ 335 (1195)
T ss_pred HHHHH
Confidence 44433
No 64
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=98.34 E-value=0.00021 Score=73.11 Aligned_cols=170 Identities=21% Similarity=0.296 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch------H-H------------------------HHHHHHHH
Q 010679 63 QKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMK------S-E------------------------RELQMRNL 111 (504)
Q Consensus 63 q~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~------a-e------------------------~E~eL~eL 111 (504)
+.|..+|..|......+.++|....+++..|+.++..-. . + ....+..|
T Consensus 86 qsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~L 165 (306)
T PF04849_consen 86 QSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEAL 165 (306)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHH
Confidence 566777777777778888888888777777777764200 0 0 01235667
Q ss_pred HHHHHHHHHHHHHHh----HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhhHHHHHHHH
Q 010679 112 TEKIAKMEAELKTAE----PVKLEFQKSKTE----AQNLVVAREELIAKVHQLTQDLQRAHTDV----QQIPALLSELES 179 (504)
Q Consensus 112 ~eki~kLEaEL~ele----~LkaELeqLr~E----LqeL~aerqeL~aqvq~L~~ELq~l~~el----qql~~L~~EIea 179 (504)
+.++..|+.|...+. .|+.+...+..+ +.++..+..+...++..|..+|.+...+. .+|..|..+|-.
T Consensus 166 q~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqivd 245 (306)
T PF04849_consen 166 QEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVD 245 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777766644332 222222222221 22233344444555566666665433322 123333333333
Q ss_pred HH-------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010679 180 LR-------QEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNV 232 (504)
Q Consensus 180 Lr-------qELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~~ 232 (504)
++ .|-+++...|...+.....|..++++++.+...+..-+...+.||.+++++
T Consensus 246 lQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR~~ 305 (306)
T PF04849_consen 246 LQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLRKR 305 (306)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 33 333334444444444444555566666666666666666777777777654
No 65
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=98.33 E-value=8e-05 Score=83.02 Aligned_cols=50 Identities=18% Similarity=0.258 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010679 50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG 99 (504)
Q Consensus 50 ~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~ 99 (504)
..+.+......+++.|..+++.|..+++.+..++..++.++..+..++..
T Consensus 318 ~~~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~ 367 (594)
T PF05667_consen 318 TEEDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEE 367 (594)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666666666666666666666666666555555554443
No 66
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.32 E-value=0.0002 Score=77.87 Aligned_cols=48 Identities=15% Similarity=0.193 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhh
Q 010679 50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQ---ELAAAQHELQILHGQI 97 (504)
Q Consensus 50 ~LEqeLe~~~eEIq~Le~e~qrLe~qi~~Lkq---ELa~lqqEL~~L~~~L 97 (504)
.+++..+.+..+|..|...+..|.+++.+.+. .++.+++..++|+..+
T Consensus 225 ~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~ 275 (581)
T KOG0995|consen 225 RLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDV 275 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHH
Confidence 45555666667777788777777777664432 2333444444444433
No 67
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=98.32 E-value=0.00026 Score=67.69 Aligned_cols=38 Identities=26% Similarity=0.274 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHE 89 (504)
Q Consensus 52 EqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqE 89 (504)
+.++..++.+|+.|+.+..+.+..+..+.++|..+.+.
T Consensus 3 e~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~ 40 (205)
T KOG1003|consen 3 EADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQA 40 (205)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34566666777766666666666666666665554443
No 68
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.32 E-value=0.00019 Score=80.34 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010679 52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG 98 (504)
Q Consensus 52 EqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~ 98 (504)
..+.....++++.+..++..|..+.......+..+...|..|+..+.
T Consensus 21 k~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~ 67 (617)
T PF15070_consen 21 KEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMA 67 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33333444444444444444444444444444444444444444443
No 69
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.32 E-value=0.00017 Score=86.91 Aligned_cols=53 Identities=8% Similarity=0.215 Sum_probs=34.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010679 47 PPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG 99 (504)
Q Consensus 47 ~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~ 99 (504)
..+.|+++++.+...|+.+..+.+.++..+.....++..++.++..+...+..
T Consensus 601 ~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~ 653 (1201)
T PF12128_consen 601 SEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQ 653 (1201)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44577777777777777777666666666666666666666666555555544
No 70
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.32 E-value=0.00011 Score=83.86 Aligned_cols=124 Identities=17% Similarity=0.285 Sum_probs=61.2
Q ss_pred CCCCCChHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchH--HHHHHHHHH
Q 010679 42 FDMMPPPEVMEQKIA--------SQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS--ERELQMRNL 111 (504)
Q Consensus 42 ~~~~p~~~~LEqeLe--------~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~a--e~E~eL~eL 111 (504)
|-.|++.+.|++.+. ..+.++..|..+.++|+..+..-...|..++++++.+...++.+.. .+...|+.|
T Consensus 155 Fa~L~pi~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l 234 (1072)
T KOG0979|consen 155 FARLSPIELLVETEKAIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELL 234 (1072)
T ss_pred HHcCChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777655443 4444555555555555555555555555555555555555444322 122223333
Q ss_pred HHHH---------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 112 TEKI---------AKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT 165 (504)
Q Consensus 112 ~eki---------~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~ 165 (504)
..+. .++.+.....+.++.++..+..++..+...+.+|+.++.++..++.....
T Consensus 235 ~~k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~ 297 (1072)
T KOG0979|consen 235 EKKKKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQR 297 (1072)
T ss_pred HHhccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHH
Confidence 2211 11122222234555566666666555555555666555555555544333
No 71
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=98.32 E-value=6.5e-05 Score=83.72 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010679 50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQ 96 (504)
Q Consensus 50 ~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~ 96 (504)
.-+++|+.+..+|+.|..++..+..++..++.++..+..++......
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~ 371 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAE 371 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555544444444444333
No 72
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.31 E-value=0.00067 Score=68.19 Aligned_cols=74 Identities=16% Similarity=0.371 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAE 126 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele 126 (504)
+.+...|.....+|..+..+...++.+++.|..++..+..++..+++++.+ .+.+|..|+.+|..+++.|.+..
T Consensus 27 ~~~~~~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~----~~~eik~l~~eI~~~~~~I~~r~ 100 (265)
T COG3883 27 ALLSDKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQ----SKAEIKKLQKEIAELKENIVERQ 100 (265)
T ss_pred hhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566888888888888888888888888888888888888888888877 44556666666666666665443
No 73
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=98.31 E-value=1e-05 Score=91.77 Aligned_cols=57 Identities=21% Similarity=0.408 Sum_probs=25.5
Q ss_pred CCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 010679 312 RGPGYEASKGPGYDASKAPS-YDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGP 370 (504)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~-~~~s~~~~y~~~~~~~y~~~~~p~y~~~~~~~y~~~~~~ 370 (504)
-++.|+ -+.++|+..+.+. ...|+.|.|++ ++|.++-+++|+|+.+++|.++-+|+|
T Consensus 742 ~~~sYg-~~~~~~g~~~~~~~~~Gs~tp~~~s-~tpl~~~s~tp~~~~~~Tp~~dG~rTP 799 (1024)
T KOG1999|consen 742 ETSSYG-ERTPGYGRVTPARYGMGSSTPMYGS-NTPLWGGSRTPARDGGATPSHDGSRTP 799 (1024)
T ss_pred Cccccc-cccccccccCccccCCCCcCccCCC-CCCCCCcccCccccCCCCcCCCCCcCC
Confidence 344454 4455566555444 24455555543 344444344444433333333333333
No 74
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=98.30 E-value=0.0001 Score=78.12 Aligned_cols=95 Identities=16% Similarity=0.130 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 010679 132 FQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKN 211 (504)
Q Consensus 132 LeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~ 211 (504)
+++++.+++....+++.|+++++.|..+|.+..--..+.+.+.+|.+.|-.||+.+.-+.+.+.+.+.+-+-..+..-+.
T Consensus 332 l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~s 411 (622)
T COG5185 332 LEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKS 411 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHH
Confidence 34444444444444444445555554444432222233444455555555566555555555555554444444444444
Q ss_pred HHHHHHHHHHHHHHH
Q 010679 212 YITMATEVEKLRAEL 226 (504)
Q Consensus 212 L~sme~EiekLraEL 226 (504)
|+..-+.+..|..+|
T Consensus 412 lek~~~~~~sl~~~i 426 (622)
T COG5185 412 LEKTLRQYDSLIQNI 426 (622)
T ss_pred HHHHHHHHHHHHHHh
Confidence 433334444444333
No 75
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=98.29 E-value=0.00023 Score=80.37 Aligned_cols=107 Identities=16% Similarity=0.162 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 010679 127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQ 206 (504)
Q Consensus 127 ~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlq 206 (504)
.|+.||.+++..-..+.++..+|+.+.-.|...+..|+.-..+.+.++.||..|..|++-|..+++.......-.+.++.
T Consensus 80 ~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qle 159 (717)
T PF09730_consen 80 RLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLE 159 (717)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555566666666666666665555544445566666666666666666666666555555556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccc
Q 010679 207 VMEKNYITMATEVEKLRAELMNAPNVD 233 (504)
Q Consensus 207 emek~L~sme~EiekLraELekle~~~ 233 (504)
+.-..|+.-+..-..|++||+...+..
T Consensus 160 EALesl~~EReqk~~LrkEL~~~~~~~ 186 (717)
T PF09730_consen 160 EALESLKSEREQKNALRKELDQHLNIE 186 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 655555555556677888888855533
No 76
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.29 E-value=0.00016 Score=83.19 Aligned_cols=52 Identities=23% Similarity=0.240 Sum_probs=25.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679 180 LRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 231 (504)
Q Consensus 180 LrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~ 231 (504)
.++..+.|+.+.+.+-....+..+.+++|+..+...++.|+.+.++|..|++
T Consensus 1687 ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~ 1738 (1758)
T KOG0994|consen 1687 ARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEK 1738 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHH
Confidence 3344444554444444444444455555554444444444555555544444
No 77
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.29 E-value=0.0002 Score=86.21 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 010679 205 LQVMEKNYITMATEVEKLRAELMNA 229 (504)
Q Consensus 205 lqemek~L~sme~EiekLraELekl 229 (504)
+.++++++..++..+.++...+.++
T Consensus 850 ~~~le~~~~~~~~~~~~~~~~l~~l 874 (1201)
T PF12128_consen 850 RKELEEELKALEEQLEQLEEQLRRL 874 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 78
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=98.28 E-value=0.00037 Score=72.47 Aligned_cols=63 Identities=19% Similarity=0.180 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcccccccc
Q 010679 174 LSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYIT----MATEVEKLRAELMNAPNVDRRA 236 (504)
Q Consensus 174 ~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~s----me~EiekLraELekle~~~~~~ 236 (504)
+.++..++.+++.++.+++.....+.++.++++++++.+.. -..||.+|++++..|++..-|.
T Consensus 229 k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~gw~ 295 (325)
T PF08317_consen 229 KKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKLTGWK 295 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHCcE
Confidence 33444444444444444444444455555555555444433 2467778888888888777775
No 79
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.28 E-value=0.00036 Score=79.77 Aligned_cols=6 Identities=17% Similarity=0.141 Sum_probs=2.1
Q ss_pred HHHHHH
Q 010679 182 QEYHHC 187 (504)
Q Consensus 182 qELq~L 187 (504)
.+.+++
T Consensus 443 ~eker~ 448 (775)
T PF10174_consen 443 REKERL 448 (775)
T ss_pred HHHHHH
Confidence 333333
No 80
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.27 E-value=0.00035 Score=79.76 Aligned_cols=45 Identities=16% Similarity=0.145 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHG 95 (504)
Q Consensus 51 LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~ 95 (504)
|+-+++++.++|..+...+..|+.....|..|++.+.++......
T Consensus 413 Ls~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~ 457 (1195)
T KOG4643|consen 413 LSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTR 457 (1195)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555554444444433
No 81
>PRK01156 chromosome segregation protein; Provisional
Probab=98.27 E-value=0.00028 Score=82.50 Aligned_cols=11 Identities=9% Similarity=0.069 Sum_probs=4.4
Q ss_pred CChHHHHHHHH
Q 010679 46 PPPEVMEQKIA 56 (504)
Q Consensus 46 p~~~~LEqeLe 56 (504)
.....++....
T Consensus 159 ~~~~~~~~~~~ 169 (895)
T PRK01156 159 LEINSLERNYD 169 (895)
T ss_pred hChHHHHHHHH
Confidence 34444433333
No 82
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=98.25 E-value=0.00031 Score=79.38 Aligned_cols=51 Identities=24% Similarity=0.199 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 170 IPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVE 220 (504)
Q Consensus 170 l~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~Eie 220 (504)
++.+++|+..+..|+++++..+............++.+..++.+.+..++.
T Consensus 496 le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~ 546 (980)
T KOG0980|consen 496 LESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELV 546 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 344445555555555555555555544455555555555555444444443
No 83
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.24 E-value=0.00026 Score=78.95 Aligned_cols=11 Identities=18% Similarity=0.453 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 010679 107 QMRNLTEKIAK 117 (504)
Q Consensus 107 eL~eL~eki~k 117 (504)
.+..+.++|+.
T Consensus 283 ~~~~i~~~Id~ 293 (569)
T PRK04778 283 KNEEIQERIDQ 293 (569)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 84
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.23 E-value=0.00043 Score=79.78 Aligned_cols=55 Identities=18% Similarity=0.080 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 174 LSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 174 ~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELek 228 (504)
++..+.|+.|..+|-.+.....+.+.+|+-.+.+-+..|+..+.+|..|+++|+.
T Consensus 1688 r~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~ 1742 (1758)
T KOG0994|consen 1688 RERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVES 1742 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH
Confidence 3335555555555544444444444444444444444455555555555555444
No 85
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=98.23 E-value=0.0002 Score=78.20 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010679 69 NQRLAATHGTLRQELAAAQHELQILHGQ 96 (504)
Q Consensus 69 ~qrLe~qi~~LkqELa~lqqEL~~L~~~ 96 (504)
.+-|+.++..++++|+.++.++...+.+
T Consensus 163 ~~fl~~ql~~~~~~L~~ae~~l~~f~~~ 190 (498)
T TIGR03007 163 QRFIDEQIKTYEKKLEAAENRLKAFKQE 190 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566666666666666666655443
No 86
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=98.23 E-value=0.00025 Score=65.41 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010679 148 ELIAKVHQLTQDLQRAH 164 (504)
Q Consensus 148 eL~aqvq~L~~ELq~l~ 164 (504)
.|..+|+.|+.+|....
T Consensus 77 ~l~rriq~LEeele~ae 93 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAE 93 (143)
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 44444444544444333
No 87
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=98.23 E-value=0.00046 Score=73.32 Aligned_cols=38 Identities=16% Similarity=0.105 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 58 QHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHG 95 (504)
Q Consensus 58 ~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~ 95 (504)
+++-|++|...+.+-+..|..|+-.-.-+...+..|+.
T Consensus 315 LNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~ 352 (527)
T PF15066_consen 315 LNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQM 352 (527)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHH
Confidence 34445555555555555555554433334444444433
No 88
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.22 E-value=0.00031 Score=78.73 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010679 204 SLQVMEKNYITMATEVEKLRAEL 226 (504)
Q Consensus 204 qlqemek~L~sme~EiekLraEL 226 (504)
+++......+.+..+.+.|..++
T Consensus 238 ~Lqqy~a~~q~l~~e~e~L~~q~ 260 (617)
T PF15070_consen 238 HLQQYVAAYQQLASEKEELHKQL 260 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444555555555554
No 89
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=98.21 E-value=0.001 Score=64.49 Aligned_cols=22 Identities=14% Similarity=0.342 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010679 206 QVMEKNYITMATEVEKLRAELM 227 (504)
Q Consensus 206 qemek~L~sme~EiekLraELe 227 (504)
.++...+..+..||..|...|.
T Consensus 167 ~~~~~~~~~l~~ei~~L~~klk 188 (194)
T PF15619_consen 167 KEAQEEVKSLQEEIQRLNQKLK 188 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555544443
No 90
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=98.21 E-value=0.00031 Score=74.62 Aligned_cols=105 Identities=15% Similarity=0.166 Sum_probs=65.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 010679 124 TAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLE 203 (504)
Q Consensus 124 ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~e 203 (504)
.++.|+.|++..+.+|+.|++.+..|..++..-.....+.+.-.++-..|..+++.+.-+.+.|+..+...+-..+..-+
T Consensus 331 ~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~ 410 (622)
T COG5185 331 KLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFK 410 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHH
Confidence 45567777777777777777777777776665443334333333334455666666666667776666665555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 204 SLQVMEKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 204 qlqemek~L~sme~EiekLraELek 228 (504)
.+.+.-.+++++..+|...++.|-.
T Consensus 411 slek~~~~~~sl~~~i~~~~~~i~~ 435 (622)
T COG5185 411 SLEKTLRQYDSLIQNITRSRSQIGH 435 (622)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHhh
Confidence 5555566666677777666666544
No 91
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=98.20 E-value=0.00062 Score=70.49 Aligned_cols=68 Identities=19% Similarity=0.174 Sum_probs=53.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcccccccc
Q 010679 169 QIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITM----ATEVEKLRAELMNAPNVDRRA 236 (504)
Q Consensus 169 ql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sm----e~EiekLraELekle~~~~~~ 236 (504)
++...+.+++.++.+++.++..|+...+++.++.++++++++.++.. ..|+.+|++++..+++.+-|.
T Consensus 219 ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l~g~~ 290 (312)
T smart00787 219 EIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSLTGWK 290 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCe
Confidence 34555666777777777777788877888888888888888777653 689999999999999888775
No 92
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=98.20 E-value=0.0002 Score=65.10 Aligned_cols=89 Identities=21% Similarity=0.152 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhh
Q 010679 111 LTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGT 190 (504)
Q Consensus 111 L~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~e 190 (504)
+.+--.+++.|+........+|..++.++..+..++.+|+.+++.....|...+..- ..+-..|..++..++..
T Consensus 40 a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw------~~qk~~le~e~~~~~~r 113 (132)
T PF07926_consen 40 AQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASW------EEQKEQLEKELSELEQR 113 (132)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHHHH
Confidence 333344556665555555566666666666666666666666666655554333221 12223344444444444
Q ss_pred HHHHHHHHHHHHHHH
Q 010679 191 YEYEKKFYNDHLESL 205 (504)
Q Consensus 191 Le~~kk~~~el~eql 205 (504)
++.+...+.-|-.++
T Consensus 114 ~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 114 IEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 93
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=98.20 E-value=0.00095 Score=64.64 Aligned_cols=16 Identities=25% Similarity=0.360 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHhc
Q 010679 214 TMATEVEKLRAELMNA 229 (504)
Q Consensus 214 sme~EiekLraELekl 229 (504)
.+..++..+..+|..|
T Consensus 168 ~~~~~~~~l~~ei~~L 183 (194)
T PF15619_consen 168 EAQEEVKSLQEEIQRL 183 (194)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 94
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.20 E-value=0.00025 Score=81.14 Aligned_cols=73 Identities=12% Similarity=0.280 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMK-SERELQMRNLTEKIAKMEAELKTA 125 (504)
Q Consensus 52 EqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~-ae~E~eL~eL~eki~kLEaEL~el 125 (504)
++.++...+.|+.|++++++|..+.+.++++ ...+..|+.+......+. .+...+...+.+....++.+++++
T Consensus 194 e~~~~~~~~~l~~L~~~~~~l~kdVE~~rer-~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l 267 (1072)
T KOG0979|consen 194 EDKLTTKTEKLNRLEDEIDKLEKDVERVRER-ERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDRAKKELRKL 267 (1072)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccchHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444322 222333333333222211 123444555555555555555443
No 95
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=98.20 E-value=0.0023 Score=65.57 Aligned_cols=174 Identities=18% Similarity=0.163 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHh-H
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAE-P 127 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele-~ 127 (504)
..+..+|..+..+-..|..++..+......|..++..++..-..+...... +-+--...|..+|..++.+...+. .
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEq---EEE~isN~LlKkl~~l~keKe~L~~~ 99 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQ---EEEFISNTLLKKLQQLKKEKETLALK 99 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555444444444444444444444444333333333222211 112223566677777776655442 3
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 010679 128 VKLEFQ----KSKTEAQNLVVAREELIAKVHQLT-QDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHL 202 (504)
Q Consensus 128 LkaELe----qLr~ELqeL~aerqeL~aqvq~L~-~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~ 202 (504)
+..|-+ .|...|.+|+.+..+|...+..-. -.+.+|.. +|..+..++..++.++++|+.+...+...++...
T Consensus 100 ~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k---~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQ 176 (310)
T PF09755_consen 100 YEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQK---KIERLEKEKSAKQEELERLRREKVDLENTLEQEQ 176 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHH
Confidence 333322 222233333333333333222111 01112222 2223333344444444444444333333333333
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 203 E-SLQVMEKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 203 e-qlqemek~L~sme~EiekLraELek 228 (504)
+ -+..+.+++..|..+-..|+++|+.
T Consensus 177 E~lvN~L~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 177 EALVNRLWKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3 2455777888888888888888876
No 96
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=98.19 E-value=0.00051 Score=72.58 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010679 203 ESLQVMEKNYITMATEVEKLRAELMNA 229 (504)
Q Consensus 203 eqlqemek~L~sme~EiekLraELekl 229 (504)
+++.+++.++..++.+++.++.+++++
T Consensus 246 ~~l~~~~~~l~~~~~~l~~~~~~l~~~ 272 (423)
T TIGR01843 246 EELTEAQARLAELRERLNKARDRLQRL 272 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455555555555555555555543
No 97
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.19 E-value=0.00028 Score=85.61 Aligned_cols=119 Identities=16% Similarity=0.183 Sum_probs=68.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch------H---HHHHHHHHHHHHHHH
Q 010679 47 PPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMK------S---ERELQMRNLTEKIAK 117 (504)
Q Consensus 47 ~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~------a---e~E~eL~eL~eki~k 117 (504)
.+..|..+.+++..++.-+..++.+|..++..+...++.++..|...+....... . ..-.++..|.+.-..
T Consensus 1154 iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~ 1233 (1822)
T KOG4674|consen 1154 IVSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKV 1233 (1822)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHH
Confidence 3456666777777777778888888888888888888887777777666542211 0 111222323333222
Q ss_pred HHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 118 MEAEL----KTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT 165 (504)
Q Consensus 118 LEaEL----~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~ 165 (504)
|.+++ ..++.|..+|+.++.++..++..+.+|..+++..+.++..++.
T Consensus 1234 LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~ 1285 (1822)
T KOG4674|consen 1234 LREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEE 1285 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32222 2344555666666666666666666666665555555554443
No 98
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.18 E-value=0.0003 Score=80.18 Aligned_cols=37 Identities=11% Similarity=0.169 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679 195 KKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 231 (504)
Q Consensus 195 kk~~~el~eqlqemek~L~sme~EiekLraELekle~ 231 (504)
+..++++....+.+=.+-..+...|+.++.+|+..++
T Consensus 459 k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~ 495 (1200)
T KOG0964|consen 459 KRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEK 495 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333444555555555555443
No 99
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=98.18 E-value=0.0008 Score=73.90 Aligned_cols=100 Identities=23% Similarity=0.215 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--h---hhHHHHHHHHHHHHHHHHHhhHHHHH----HHHHH
Q 010679 130 LEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ--Q---IPALLSELESLRQEYHHCRGTYEYEK----KFYND 200 (504)
Q Consensus 130 aELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elq--q---l~~L~~EIeaLrqELq~LR~eLe~~k----k~~~e 200 (504)
+|+.-+..++...+..+..|+.++..|..++.......+ + +..+...+..+..++..|-.+++.++ +..+.
T Consensus 235 aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~ 314 (629)
T KOG0963|consen 235 AEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREK 314 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666667777777777777777754433221 1 11222222223334444444444333 23344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010679 201 HLESLQVMEKNYITMATEVEKLRAELMNA 229 (504)
Q Consensus 201 l~eqlqemek~L~sme~EiekLraELekl 229 (504)
+..+++.+++++.....+|++|+.+|.+.
T Consensus 315 ~~~qI~~le~~l~~~~~~leel~~kL~~~ 343 (629)
T KOG0963|consen 315 HKAQISALEKELKAKISELEELKEKLNSR 343 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45566667777777777777776666554
No 100
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=98.18 E-value=3.4e-07 Score=104.24 Aligned_cols=68 Identities=16% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010679 163 AHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP 230 (504)
Q Consensus 163 l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle 230 (504)
+..++++...++.+++.+++++.++..++.........+..++..+.+.+..+..+.+.+..+.+.++
T Consensus 351 LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~ 418 (713)
T PF05622_consen 351 LEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLR 418 (713)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455556666666666666666666666666665666666666666666666655555554
No 101
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.17 E-value=0.00044 Score=84.22 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 48 PEVMEQKIASQHVEMQKLATENQRLAATHG 77 (504)
Q Consensus 48 ~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~ 77 (504)
++.|+.+|..+..++..|......|..+..
T Consensus 751 IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~ 780 (1353)
T TIGR02680 751 LAAVDDELAELARELRALGARQRALADELA 780 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888777777766543
No 102
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=98.17 E-value=0.0028 Score=61.88 Aligned_cols=180 Identities=17% Similarity=0.190 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHH-------HHHHHHHHHHHHHHHH
Q 010679 50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSEREL-------QMRNLTEKIAKMEAEL 122 (504)
Q Consensus 50 ~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~-------eL~eL~eki~kLEaEL 122 (504)
.++..|.....++...+.++..|...+..+.........-+..+...|.++..+.+. ++..+....+.+.++|
T Consensus 6 d~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL 85 (207)
T PF05010_consen 6 DLDAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADL 85 (207)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHH
Confidence 455556666666555555555555555555555444444444444444444333332 3333333333333333
Q ss_pred HHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH-HHHHHHHHHHHHHHHHhhHHH----
Q 010679 123 KTAE----PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPA-LLSELESLRQEYHHCRGTYEY---- 193 (504)
Q Consensus 123 ~ele----~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~-L~~EIeaLrqELq~LR~eLe~---- 193 (504)
..++ .|-...+.++..+..+...-..|...++.....|....++.+.+.. ....|+.+..||..++...+.
T Consensus 86 ~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~a 165 (207)
T PF05010_consen 86 NSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLA 165 (207)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3222 1222223333333333333333333333333333322222222211 123355556666665554332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010679 194 EKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 229 (504)
Q Consensus 194 ~kk~~~el~eqlqemek~L~sme~EiekLraELekl 229 (504)
++..+...+-+++.++..|+...+|.+.|..=.+.|
T Consensus 166 Lqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeL 201 (207)
T PF05010_consen 166 LQASLKKEEMKVQSLEESLEQKTKENEELTKICDEL 201 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333445555555555555555554444433
No 103
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.16 E-value=0.00054 Score=83.42 Aligned_cols=50 Identities=14% Similarity=0.123 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 226 (504)
Q Consensus 177 IeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraEL 226 (504)
++++.++|+.++.+|+.+.+.+..+.+++.++.+.+..+..++..++..+
T Consensus 923 ~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~~~a~~~~ 972 (1353)
T TIGR02680 923 VDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKRAEADATL 972 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566666666666655555555555555555555555554333333
No 104
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.16 E-value=0.00021 Score=83.02 Aligned_cols=18 Identities=17% Similarity=0.351 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010679 63 QKLATENQRLAATHGTLR 80 (504)
Q Consensus 63 q~Le~e~qrLe~qi~~Lk 80 (504)
..|+....++..+..+|+
T Consensus 468 keL~e~i~~lk~~~~el~ 485 (1317)
T KOG0612|consen 468 KELEETIEKLKSEESELQ 485 (1317)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 105
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=98.16 E-value=0.00041 Score=73.27 Aligned_cols=58 Identities=14% Similarity=0.082 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679 174 LSELESLRQEYHHCRGTYEYEKKFYNDHLE-SLQVMEKNYITMATEVEKLRAELMNAPN 231 (504)
Q Consensus 174 ~~EIeaLrqELq~LR~eLe~~kk~~~el~e-qlqemek~L~sme~EiekLraELekle~ 231 (504)
+.++..++.++..++.+++..+..+..+.. ...+....+..+..++.+++.+++.++.
T Consensus 209 ~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~ 267 (423)
T TIGR01843 209 QGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARD 267 (423)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433333322 2344556677788888888888877654
No 106
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=98.16 E-value=0.00036 Score=64.37 Aligned_cols=25 Identities=12% Similarity=0.185 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 202 LESLQVMEKNYITMATEVEKLRAEL 226 (504)
Q Consensus 202 ~eqlqemek~L~sme~EiekLraEL 226 (504)
..+++.++.....++..++.|..++
T Consensus 114 eRkv~~le~~~~~~E~k~eel~~k~ 138 (143)
T PF12718_consen 114 ERKVKALEQERDQWEEKYEELEEKY 138 (143)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3333333333334444444444333
No 107
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.15 E-value=0.00058 Score=82.94 Aligned_cols=16 Identities=25% Similarity=0.565 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 010679 108 MRNLTEKIAKMEAELK 123 (504)
Q Consensus 108 L~eL~eki~kLEaEL~ 123 (504)
++.|...|..|+.++.
T Consensus 1309 ~~kL~~ei~~Lk~el~ 1324 (1822)
T KOG4674|consen 1309 YEKLKSEISRLKEELE 1324 (1822)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555555554
No 108
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=98.14 E-value=0.00016 Score=74.77 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH
Q 010679 108 MRNLTEKIAKMEAELKTAEPVKLEF 132 (504)
Q Consensus 108 L~eL~eki~kLEaEL~ele~LkaEL 132 (504)
+..|.++...|+.++..+..+..++
T Consensus 174 ~~~l~~~~~~L~~e~~~L~~~~~e~ 198 (312)
T smart00787 174 KPKLRDRKDALEEELRQLKQLEDEL 198 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3444444555555555444444443
No 109
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.14 E-value=0.00092 Score=74.24 Aligned_cols=14 Identities=14% Similarity=0.176 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 010679 106 LQMRNLTEKIAKME 119 (504)
Q Consensus 106 ~eL~eL~eki~kLE 119 (504)
.++.++...+.+++
T Consensus 151 ~k~ae~~~lr~k~d 164 (716)
T KOG4593|consen 151 DKLAELGTLRNKLD 164 (716)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 110
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=98.14 E-value=0.00089 Score=75.81 Aligned_cols=21 Identities=38% Similarity=0.222 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHH
Q 010679 177 LESLRQEYHHCRGTYEYEKKF 197 (504)
Q Consensus 177 IeaLrqELq~LR~eLe~~kk~ 197 (504)
++.+++|+..+..+++.++..
T Consensus 496 le~l~~El~~l~~e~~~lq~~ 516 (980)
T KOG0980|consen 496 LESLRQELALLLIELEELQRT 516 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444433
No 111
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=98.13 E-value=0.0011 Score=64.25 Aligned_cols=53 Identities=28% Similarity=0.440 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 010679 174 LSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEK----NYITMATEVEKLRAEL 226 (504)
Q Consensus 174 ~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek----~L~sme~EiekLraEL 226 (504)
.++|...++..++.+..++.++..+.+.++++-...+ +...|-+....|+.+|
T Consensus 144 ~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~~l 200 (202)
T PF06818_consen 144 RAELQRERQRREEQRSSFEQERRTWQEEKEKVIRYQKQLQQNYVQMYQRNQALEREL 200 (202)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333344444566666666666666544444 4445666666666665
No 112
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=98.13 E-value=0.0012 Score=73.67 Aligned_cols=183 Identities=15% Similarity=0.204 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch-------HHHHHHHHHHHHHHHHHHHH
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMK-------SERELQMRNLTEKIAKMEAE 121 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~-------ae~E~eL~eL~eki~kLEaE 121 (504)
..+++.|+.+..+|+.+..++..|...-...+.++..++...+.+++.+.... ..++.++..+.....+++.-
T Consensus 104 ~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~l 183 (560)
T PF06160_consen 104 KEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEEL 183 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666677777666666666666666666666666666666654322 23344444444444433332
Q ss_pred HH---------HHhHHHHHHHHHHHHHHH------------------HHHHHHH------------HHHHHHHHHHHHHH
Q 010679 122 LK---------TAEPVKLEFQKSKTEAQN------------------LVVAREE------------LIAKVHQLTQDLQR 162 (504)
Q Consensus 122 L~---------ele~LkaELeqLr~ELqe------------------L~aerqe------------L~aqvq~L~~ELq~ 162 (504)
.. .+..++.++..++..+.+ |..-..+ +..+++.+..+|..
T Consensus 184 t~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~ 263 (560)
T PF06160_consen 184 TENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEE 263 (560)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Confidence 21 011222222222222211 1111111 11122222222222
Q ss_pred HHHhhhh--hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679 163 AHTDVQQ--IPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 231 (504)
Q Consensus 163 l~~elqq--l~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~ 231 (504)
+...+.+ +......++.+..+|+.+-..++.+-.....+.+.+..+.+.+..+......|..+++.+..
T Consensus 264 ~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~ 334 (560)
T PF06160_consen 264 ALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQ 334 (560)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222 22334445555666666666666666666666666666666666666666666666666554
No 113
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=98.12 E-value=0.0008 Score=76.16 Aligned_cols=49 Identities=8% Similarity=0.126 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 178 ESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 226 (504)
Q Consensus 178 eaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraEL 226 (504)
..+..+++.++.++..++..+..+.+++..++++++.+++++++++...
T Consensus 424 ~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 472 (650)
T TIGR03185 424 AQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQK 472 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444444444444443333
No 114
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.11 E-value=0.00047 Score=76.88 Aligned_cols=33 Identities=6% Similarity=0.174 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 194 EKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 226 (504)
Q Consensus 194 ~kk~~~el~eqlqemek~L~sme~EiekLraEL 226 (504)
..+.+.++.+.+..+.++...+......++.-|
T Consensus 474 i~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~I 506 (569)
T PRK04778 474 VNRLLEEATEDVETLEEETEELVENATLTEQLI 506 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443333333
No 115
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=98.11 E-value=0.0017 Score=62.25 Aligned_cols=32 Identities=22% Similarity=0.199 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 62 MQKLATENQRLAATHGTLRQELAAAQHELQIL 93 (504)
Q Consensus 62 Iq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L 93 (504)
|..|...++-|+.+++..+..+..+++.|..+
T Consensus 6 va~lnrri~~leeele~aqErl~~a~~KL~Ea 37 (205)
T KOG1003|consen 6 VAALNRRIQLLEEELDRAQERLATALQKLEEA 37 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443
No 116
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=98.10 E-value=0.0018 Score=65.76 Aligned_cols=100 Identities=15% Similarity=0.221 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 010679 131 EFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQ----IPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQ 206 (504)
Q Consensus 131 ELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqq----l~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlq 206 (504)
++..++....-|..++.+.+.++..|+.++...+..+.+ ++.++.++...+.++.+++..+..++..+.....+-.
T Consensus 138 d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqe 217 (305)
T PF14915_consen 138 DVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQE 217 (305)
T ss_pred hHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344455545555556666666666666666544433221 3445556666666666666666666666666555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q 010679 207 VMEKNYITMATEVEKLRAELMNAP 230 (504)
Q Consensus 207 emek~L~sme~EiekLraELekle 230 (504)
.+++.|..+..|-.-|+.+|+.+.
T Consensus 218 s~eERL~QlqsEN~LLrQQLddA~ 241 (305)
T PF14915_consen 218 SLEERLSQLQSENMLLRQQLDDAH 241 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666665544
No 117
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=98.09 E-value=0.0005 Score=78.93 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010679 69 NQRLAATHGTLRQELAAAQHELQILHGQ 96 (504)
Q Consensus 69 ~qrLe~qi~~LkqELa~lqqEL~~L~~~ 96 (504)
.+=|..++.+++++|+.++.++...+.+
T Consensus 196 ~~~L~~ql~~l~~~l~~aE~~l~~fk~~ 223 (754)
T TIGR01005 196 ADFLAPEIADLSKQSRDAEAEVAAYRAQ 223 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777766666666554
No 118
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=98.09 E-value=0.0038 Score=61.00 Aligned_cols=23 Identities=9% Similarity=0.096 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010679 132 FQKSKTEAQNLVVAREELIAKVH 154 (504)
Q Consensus 132 LeqLr~ELqeL~aerqeL~aqvq 154 (504)
.+++..+|..+.....+|-.+..
T Consensus 78 rdq~~~dL~s~E~sfsdl~~rye 100 (207)
T PF05010_consen 78 RDQAYADLNSLEKSFSDLHKRYE 100 (207)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 33333333333333333333333
No 119
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=98.07 E-value=0.0015 Score=70.92 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 010679 48 PEVMEQKIASQHVEMQKLATENQ 70 (504)
Q Consensus 48 ~~~LEqeLe~~~eEIq~Le~e~q 70 (504)
...++.++..+..++.+|..+..
T Consensus 99 ~~~~~~~~~~~~~~~~rL~a~~~ 121 (457)
T TIGR01000 99 KQLLEQQLDNLKDQKKSLDTLKQ 121 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555443
No 120
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.06 E-value=0.0014 Score=69.14 Aligned_cols=51 Identities=20% Similarity=0.205 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG 99 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~ 99 (504)
..++.++..++.+++.|+.+-.-.......+++|...+..+...|++.+++
T Consensus 218 ~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~re 268 (502)
T KOG0982|consen 218 IDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRRE 268 (502)
T ss_pred hhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 456667777777777666654444455667777777777777766666544
No 121
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=98.06 E-value=0.0039 Score=62.63 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHhccc
Q 010679 211 NYITMATEVEKLRAELMNAPN 231 (504)
Q Consensus 211 ~L~sme~EiekLraELekle~ 231 (504)
.++.++.+|.+|+++|+.|..
T Consensus 201 ~i~el~e~I~~L~~eV~~L~~ 221 (258)
T PF15397_consen 201 EIDELEEEIPQLRAEVEQLQA 221 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555443
No 122
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=98.06 E-value=0.00029 Score=78.48 Aligned_cols=55 Identities=22% Similarity=0.341 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 172 ALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 226 (504)
Q Consensus 172 ~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraEL 226 (504)
.+..+|+.+...+..+...++.....+..+.+.++++.++|..++.+...+...|
T Consensus 348 ~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l 402 (560)
T PF06160_consen 348 ELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESL 402 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433333333333333333333333333333333333333
No 123
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=98.04 E-value=0.00011 Score=81.22 Aligned_cols=12 Identities=25% Similarity=0.457 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 010679 150 IAKVHQLTQDLQ 161 (504)
Q Consensus 150 ~aqvq~L~~ELq 161 (504)
..+++++.++|+
T Consensus 169 ~~~~qe~naeL~ 180 (916)
T KOG0249|consen 169 EEQLEELNAELQ 180 (916)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 124
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=98.04 E-value=0.0014 Score=72.11 Aligned_cols=18 Identities=17% Similarity=0.222 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHhccc
Q 010679 214 TMATEVEKLRAELMNAPN 231 (504)
Q Consensus 214 sme~EiekLraELekle~ 231 (504)
.+++++..+..+|+++++
T Consensus 321 ~le~~l~~~~~~leel~~ 338 (629)
T KOG0963|consen 321 ALEKELKAKISELEELKE 338 (629)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555555544
No 125
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=98.04 E-value=0.0011 Score=60.88 Aligned_cols=29 Identities=21% Similarity=0.360 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 61 EMQKLATENQRLAATHGTLRQELAAAQHE 89 (504)
Q Consensus 61 EIq~Le~e~qrLe~qi~~LkqELa~lqqE 89 (504)
++.....+...|...+..|..+|+..+..
T Consensus 11 kLK~~~~e~dsle~~v~~LEreLe~~q~~ 39 (140)
T PF10473_consen 11 KLKESESEKDSLEDHVESLERELEMSQEN 39 (140)
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHh
Confidence 33334444444444444444444444333
No 126
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=98.04 E-value=0.00096 Score=70.03 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 010679 173 LLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQV 207 (504)
Q Consensus 173 L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqe 207 (504)
+..-|+.|+.|++++|..+...++.+.+...++.+
T Consensus 251 ~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~ 285 (552)
T KOG2129|consen 251 EKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRA 285 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34447778888888888777777666655555443
No 127
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=98.03 E-value=0.0013 Score=65.15 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010679 103 ERELQMRNLTEKIAKMEA 120 (504)
Q Consensus 103 e~E~eL~eL~eki~kLEa 120 (504)
+++.+|..|+.+..+++.
T Consensus 49 elesqL~q~etrnrdl~t 66 (333)
T KOG1853|consen 49 ELESQLDQLETRNRDLET 66 (333)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 128
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=98.03 E-value=0.0024 Score=66.04 Aligned_cols=58 Identities=16% Similarity=0.212 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679 174 LSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 231 (504)
Q Consensus 174 ~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~ 231 (504)
+.|++.+...+..|+.+...++..++.....+-+|......+..+++.++.++++|++
T Consensus 243 k~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~ 300 (309)
T PF09728_consen 243 KKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEK 300 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555544444444444444444544545555556666666655554
No 129
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=98.03 E-value=0.0027 Score=65.68 Aligned_cols=38 Identities=11% Similarity=0.048 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 191 YEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 191 Le~~kk~~~el~eqlqemek~L~sme~EiekLraELek 228 (504)
|+.+-.++..+.+++..++++...+...|.+-+.-|+.
T Consensus 191 IDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~ 228 (319)
T PF09789_consen 191 IDALIMENRYLKERLKQLQEEKELLKQTINKYKSALER 228 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444556677777888888888888888888888774
No 130
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.03 E-value=0.00093 Score=77.91 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHhccc
Q 010679 215 MATEVEKLRAELMNAPN 231 (504)
Q Consensus 215 me~EiekLraELekle~ 231 (504)
++.+++-+..+++++.+
T Consensus 672 ~e~~lk~~q~~~eq~~~ 688 (1317)
T KOG0612|consen 672 LERKLKMLQNELEQENA 688 (1317)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555556666655544
No 131
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.0015 Score=70.73 Aligned_cols=54 Identities=24% Similarity=0.300 Sum_probs=32.5
Q ss_pred ChHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 010679 47 PPEVMEQKIASQHVEMQK--------------LATENQRLAATHGTLRQELAAAQHELQILHGQIGGM 100 (504)
Q Consensus 47 ~~~~LEqeLe~~~eEIq~--------------Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l 100 (504)
.++.+.++|+.+..++.. +..+...|+.++++|+.+++.++.||+.++..+.+.
T Consensus 9 ~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~ 76 (772)
T KOG0999|consen 9 EVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQY 76 (772)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666665555542 334445566666666667777777777777666543
No 132
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.01 E-value=0.0013 Score=72.55 Aligned_cols=53 Identities=28% Similarity=0.357 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhccc
Q 010679 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAA--AQHELQILHGQIGGM 100 (504)
Q Consensus 48 ~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~--lqqEL~~L~~~L~~l 100 (504)
.+..-++|..+..+++.+..++..|..++..|+.+|+. ..++|......|..+
T Consensus 404 ~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~l 458 (961)
T KOG4673|consen 404 REEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQL 458 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 35556677777777777777777777777767666654 233444444444443
No 133
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=98.01 E-value=0.00046 Score=70.68 Aligned_cols=36 Identities=17% Similarity=0.350 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 54 KIASQHVEMQKLATENQRLAATHGTLRQELAAAQHE 89 (504)
Q Consensus 54 eLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqE 89 (504)
.++.++.+++.|+.+|..|..+...|+.+-..+.++
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~Eek 196 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEK 196 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHH
Confidence 345556666666666666666666666554444333
No 134
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=97.99 E-value=0.0043 Score=63.06 Aligned_cols=102 Identities=13% Similarity=0.214 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHH--
Q 010679 50 VMEQKIASQHVEMQKLATENQ----RLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK-- 123 (504)
Q Consensus 50 ~LEqeLe~~~eEIq~Le~e~q----rLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~-- 123 (504)
.|..+|..++-||..+..+++ +...+++-+++..+.++..|..-...|.+.......++..|.++...|..+|.
T Consensus 3 ~Lq~eia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~E 82 (305)
T PF14915_consen 3 MLQDEIAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKE 82 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHh
Confidence 467888888888887776654 34556666666666666665555555544444455666677766555555443
Q ss_pred --HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 124 --TAEPVKLEFQKSKTEAQNLVVAREELIA 151 (504)
Q Consensus 124 --ele~LkaELeqLr~ELqeL~aerqeL~a 151 (504)
.-+.|..||+..+..|.....+..+-..
T Consensus 83 Kq~kerLEtEiES~rsRLaaAi~d~dqsq~ 112 (305)
T PF14915_consen 83 KQNKERLETEIESYRSRLAAAIQDHDQSQT 112 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 3346667776666665555444443333
No 135
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=97.99 E-value=0.0016 Score=69.97 Aligned_cols=99 Identities=16% Similarity=0.179 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 010679 135 SKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ----QIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEK 210 (504)
Q Consensus 135 Lr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elq----ql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek 210 (504)
+..++.+++.++..++..++.++.++.++..+.. +|.+++.+|..+..|.+.+..-|...+..-.++..++++|+.
T Consensus 203 ~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleD 282 (596)
T KOG4360|consen 203 CVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELED 282 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444555555555555555555555555444432 234445555555555555555555556666667777788888
Q ss_pred HHHHHHHHHHHHHHHHHhccccc
Q 010679 211 NYITMATEVEKLRAELMNAPNVD 233 (504)
Q Consensus 211 ~L~sme~EiekLraELekle~~~ 233 (504)
+..+...++...++||.+|+..+
T Consensus 283 kyAE~m~~~~EaeeELk~lrs~~ 305 (596)
T KOG4360|consen 283 KYAECMQMLHEAEEELKCLRSCD 305 (596)
T ss_pred HHHHHHHHHHHHHHHHHhhccCC
Confidence 88888888888899999987644
No 136
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=97.98 E-value=0.00037 Score=77.18 Aligned_cols=36 Identities=14% Similarity=0.304 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELA 84 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa 84 (504)
.++|.+|+....++..++..+..|...++.++++|.
T Consensus 94 dklE~~Lankda~lrq~eekn~slqerLelaE~~l~ 129 (916)
T KOG0249|consen 94 DKLENELANKDADLRQNEEKNRSLQERLELAEPKLQ 129 (916)
T ss_pred HHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhH
Confidence 566777777777776666666666666665555544
No 137
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.98 E-value=0.0015 Score=73.94 Aligned_cols=107 Identities=14% Similarity=0.170 Sum_probs=76.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 010679 125 AEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLES 204 (504)
Q Consensus 125 le~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eq 204 (504)
.+.+..+...|+.+|.+++..-..|-....+|+.+.-.++..+.-+..-+-|.+.++.||.++..+++.++..++++...
T Consensus 71 ~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rL 150 (717)
T PF09730_consen 71 CEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARL 150 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777788877777777777777778777777777777777777888999999999999999888888887776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679 205 LQVMEKNYITMATEVEKLRAELMNAPN 231 (504)
Q Consensus 205 lqemek~L~sme~EiekLraELekle~ 231 (504)
..-.+++|+..-.-|+.-+.+-..|++
T Consensus 151 k~iae~qleEALesl~~EReqk~~Lrk 177 (717)
T PF09730_consen 151 KEIAEKQLEEALESLKSEREQKNALRK 177 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665666655544444444444444444
No 138
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=97.98 E-value=0.0026 Score=62.30 Aligned_cols=49 Identities=22% Similarity=0.298 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI 97 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L 97 (504)
..|++.|....+.|..+...+.++......++.++..+..++..+....
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A 74 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQA 74 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666666666666555555544
No 139
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=97.98 E-value=0.00046 Score=75.32 Aligned_cols=50 Identities=22% Similarity=0.232 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010679 48 PEVMEQKIASQHVEMQKLATENQ--------RLAATHGTLRQELAAAQHELQILHGQI 97 (504)
Q Consensus 48 ~~~LEqeLe~~~eEIq~Le~e~q--------rLe~qi~~LkqELa~lqqEL~~L~~~L 97 (504)
...++++++....++.....++. .+..++..+++++..++.++..++..+
T Consensus 170 l~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~ 227 (498)
T TIGR03007 170 IKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQR 227 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777665543221 233444555555554444444444433
No 140
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=0.0045 Score=69.68 Aligned_cols=56 Identities=18% Similarity=0.245 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010679 178 ESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVD 233 (504)
Q Consensus 178 eaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~~~ 233 (504)
+.|+.+++.....++.++..+.++...+..+..++..++.|+++|+.+|+.+.+.+
T Consensus 569 ~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~ 624 (698)
T KOG0978|consen 569 EDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEE 624 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 33333333444444444444444444444444555556666666666666665544
No 141
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=97.97 E-value=0.0052 Score=61.80 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679 193 YEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 231 (504)
Q Consensus 193 ~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~ 231 (504)
..++.+....+.+.++++.+..+..|+++|+.++.+.++
T Consensus 190 ~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~Re 228 (258)
T PF15397_consen 190 VMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPRE 228 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
Confidence 345666667777788888888888888888888775443
No 142
>PF13514 AAA_27: AAA domain
Probab=97.97 E-value=0.0028 Score=75.95 Aligned_cols=36 Identities=17% Similarity=0.275 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010679 62 MQKLATENQRLAATHGTLRQELAAAQHELQILHGQI 97 (504)
Q Consensus 62 Iq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L 97 (504)
+..+..+...+...+..++.++.....++..+...+
T Consensus 738 l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l 773 (1111)
T PF13514_consen 738 LREALAEIRELRRRIEQMEADLAAFEEQVAALAERL 773 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444444455555555555555555555555554443
No 143
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.96 E-value=1.6e-06 Score=98.83 Aligned_cols=94 Identities=16% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 136 KTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITM 215 (504)
Q Consensus 136 r~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sm 215 (504)
+.+++.|+.+...|..++..|+.++.+......++..++.+|..|+.++......++.+...+..+.+++..++...+.+
T Consensus 331 k~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l 410 (713)
T PF05622_consen 331 KRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERL 410 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444445554444444444444445555555554444444444444444445554444444444
Q ss_pred HHHHHHHHHHHHhc
Q 010679 216 ATEVEKLRAELMNA 229 (504)
Q Consensus 216 e~EiekLraELekl 229 (504)
..+++.|+..++.+
T Consensus 411 ~~e~~~L~e~~eeL 424 (713)
T PF05622_consen 411 QEERDSLRETNEEL 424 (713)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHh
Confidence 44444444444443
No 144
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=97.96 E-value=0.004 Score=60.66 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 010679 208 MEKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 208 mek~L~sme~EiekLraELek 228 (504)
+++.+..|...+++..++|..
T Consensus 148 LEkKl~~l~~~lE~keaqL~e 168 (201)
T PF13851_consen 148 LEKKLQALSEQLEKKEAQLNE 168 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 145
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=97.95 E-value=0.003 Score=67.28 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 49 EVMEQKIASQHVEMQKLATENQRL 72 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrL 72 (504)
+.+++++..++.||+.|..+++++
T Consensus 90 Es~~~kl~RL~~Ev~EL~eEl~~~ 113 (388)
T PF04912_consen 90 ESPEQKLQRLRREVEELKEELEKR 113 (388)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777776664
No 146
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.95 E-value=0.0014 Score=75.68 Aligned_cols=35 Identities=11% Similarity=0.199 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010679 196 KFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP 230 (504)
Q Consensus 196 k~~~el~eqlqemek~L~sme~EiekLraELekle 230 (504)
..+.++.+.++.+-+++..+.++|..++.++++++
T Consensus 856 ~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~ 890 (1141)
T KOG0018|consen 856 DEINEVKKILRRLVKELTKLDKEITSIESKIERKE 890 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Confidence 33344444445555555555555555555555543
No 147
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=0.00091 Score=75.14 Aligned_cols=69 Identities=16% Similarity=0.065 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHH
Q 010679 51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK 123 (504)
Q Consensus 51 LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ 123 (504)
.++.++.+..-++.+...+.++..+++.+++...+++.+.+.++.++.. ...+...|+++..-++.++.
T Consensus 648 ~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~----~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 648 AEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQD----FISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhc
Confidence 3344444444444555555555555555555555555555555544443 22233344444444444443
No 148
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=97.93 E-value=0.0019 Score=74.26 Aligned_cols=30 Identities=13% Similarity=0.129 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 010679 71 RLAATHGTLRQELAAAQHELQILHGQIGGM 100 (504)
Q Consensus 71 rLe~qi~~LkqELa~lqqEL~~L~~~L~~l 100 (504)
......+-|..+|..++++++..+.++.+.
T Consensus 191 ~~~~a~~~L~~ql~~l~~~l~~aE~~l~~f 220 (754)
T TIGR01005 191 SNTAAADFLAPEIADLSKQSRDAEAEVAAY 220 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555555555543
No 149
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=97.91 E-value=0.005 Score=62.13 Aligned_cols=21 Identities=14% Similarity=0.276 Sum_probs=9.6
Q ss_pred CChHHHHHHHHHHHHHHHHHH
Q 010679 46 PPPEVMEQKIASQHVEMQKLA 66 (504)
Q Consensus 46 p~~~~LEqeLe~~~eEIq~Le 66 (504)
|+|..|+..|+....+++...
T Consensus 17 ~~~~~l~~~~e~~~~~L~~~~ 37 (264)
T PF06008_consen 17 PAPYKLLSSIEDLTNQLRSYR 37 (264)
T ss_pred hhHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444333
No 150
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=97.90 E-value=0.0013 Score=69.93 Aligned_cols=56 Identities=16% Similarity=0.164 Sum_probs=27.9
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 010679 44 MMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGM 100 (504)
Q Consensus 44 ~~p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l 100 (504)
++|..+..=+.+.-+.+++. |...+++|..+....+..|..++-.-.-|++.++++
T Consensus 295 ~~~d~eqs~Eslqpleedma-LNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeL 350 (527)
T PF15066_consen 295 KTPDTEQSFESLQPLEEDMA-LNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKEL 350 (527)
T ss_pred cCCCHHhhhhccCCcHHHHH-HHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHH
Confidence 34555444445555544432 333455565555555555555555555555555443
No 151
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=97.90 E-value=0.0024 Score=68.62 Aligned_cols=26 Identities=27% Similarity=0.380 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010679 71 RLAATHGTLRQELAAAQHELQILHGQ 96 (504)
Q Consensus 71 rLe~qi~~LkqELa~lqqEL~~L~~~ 96 (504)
-|+.++..++++|..++.+|...+.+
T Consensus 175 fl~~ql~~~~~~l~~ae~~l~~fr~~ 200 (444)
T TIGR03017 175 WFVQQIAALREDLARAQSKLSAYQQE 200 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555544443
No 152
>PRK11281 hypothetical protein; Provisional
Probab=97.90 E-value=0.0011 Score=78.74 Aligned_cols=16 Identities=6% Similarity=0.277 Sum_probs=9.5
Q ss_pred CCChHHHHHHHHHHHH
Q 010679 45 MPPPEVMEQKIASQHV 60 (504)
Q Consensus 45 ~p~~~~LEqeLe~~~e 60 (504)
+|..+.++.+|+.+.+
T Consensus 35 ~p~~~~iq~~l~~~~~ 50 (1113)
T PRK11281 35 LPTEADVQAQLDALNK 50 (1113)
T ss_pred CCCHHHHHHHHHHhhc
Confidence 4666666666665543
No 153
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.89 E-value=0.0028 Score=70.16 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 48 PEVMEQKIASQHVEMQKLATENQRLAATHG 77 (504)
Q Consensus 48 ~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~ 77 (504)
++.+|.++.+...|...|..+...|..++.
T Consensus 411 va~lEkKvqa~~kERDalr~e~kslk~ela 440 (961)
T KOG4673|consen 411 VATLEKKVQALTKERDALRREQKSLKKELA 440 (961)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 466777777777777777766665555543
No 154
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=97.89 E-value=0.00022 Score=73.83 Aligned_cols=62 Identities=18% Similarity=0.126 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 010679 175 SELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRA 236 (504)
Q Consensus 175 ~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~~~~~~ 236 (504)
++|..++.|++.+..+.+...+....+..++.++.++++++...++.+..+|++|++.+.++
T Consensus 78 ~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv~n 139 (314)
T PF04111_consen 78 QELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTNVYN 139 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--TTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 34455555555555555566666777777888888889999999999999999999988765
No 155
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=97.89 E-value=0.0015 Score=74.55 Aligned_cols=27 Identities=11% Similarity=0.208 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010679 204 SLQVMEKNYITMATEVEKLRAELMNAP 230 (504)
Q Consensus 204 qlqemek~L~sme~EiekLraELekle 230 (504)
|.+.+.+.|..+..+|+++..+|.+++
T Consensus 686 Q~~~I~~iL~~~~~~I~~~v~~ik~i~ 712 (717)
T PF10168_consen 686 QKRTIKEILKQQGEEIDELVKQIKNIK 712 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555543
No 156
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=97.89 E-value=0.0016 Score=65.16 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010679 204 SLQVMEKNYITMATEVEKLRAELMNAP 230 (504)
Q Consensus 204 qlqemek~L~sme~EiekLraELekle 230 (504)
.+.++.+++..-..|..+|++||..|.
T Consensus 163 k~e~L~ekynkeveerkrle~e~k~lq 189 (307)
T PF10481_consen 163 KYEELQEKYNKEVEERKRLEAEVKALQ 189 (307)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 344444444444455555555555544
No 157
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.0015 Score=73.43 Aligned_cols=11 Identities=27% Similarity=0.661 Sum_probs=4.1
Q ss_pred HHHHHHHHhhh
Q 010679 87 QHELQILHGQI 97 (504)
Q Consensus 87 qqEL~~L~~~L 97 (504)
++++..|+.++
T Consensus 705 ~~q~~~Lk~qL 715 (970)
T KOG0946|consen 705 KDQLDLLKNQL 715 (970)
T ss_pred HHHHHHHHHHh
Confidence 33333333333
No 158
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=97.87 E-value=0.0096 Score=61.64 Aligned_cols=87 Identities=15% Similarity=0.268 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHHHHH
Q 010679 145 AREELIAKVHQLTQDLQRAHTDVQQ----IPALLSELESLRQEYHHCRGTYEYEKKF-------YNDHLESLQVMEKNYI 213 (504)
Q Consensus 145 erqeL~aqvq~L~~ELq~l~~elqq----l~~L~~EIeaLrqELq~LR~eLe~~kk~-------~~el~eqlqemek~L~ 213 (504)
++.+|..+++.+..++.+++.+++. .+++..|.+..+...++|-.+|.+.-.. ++.+..+.+-+.+++.
T Consensus 127 ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~ 206 (319)
T PF09789_consen 127 EREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLK 206 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHH
Confidence 3444445555555555444444332 2345555666666666666666655322 4455555566777888
Q ss_pred HHHHHHHHHHHHHHhccc
Q 010679 214 TMATEVEKLRAELMNAPN 231 (504)
Q Consensus 214 sme~EiekLraELekle~ 231 (504)
.++.|+.-++..|.+...
T Consensus 207 q~qeE~~l~k~~i~KYK~ 224 (319)
T PF09789_consen 207 QLQEEKELLKQTINKYKS 224 (319)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888887665
No 159
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=97.87 E-value=0.0015 Score=70.78 Aligned_cols=29 Identities=7% Similarity=0.012 Sum_probs=11.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 010679 181 RQEYHHCRGTYEYEKKFYNDHLESLQVME 209 (504)
Q Consensus 181 rqELq~LR~eLe~~kk~~~el~eqlqeme 209 (504)
+..++.++..|...++....+.+.+..++
T Consensus 381 q~~l~~~~~~l~~i~~~q~~~~e~L~~Lr 409 (570)
T COG4477 381 QDNLEEIEKALTDIEDEQEKVQEHLTSLR 409 (570)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33344444444444443334333333333
No 160
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=97.85 E-value=0.0061 Score=59.99 Aligned_cols=47 Identities=11% Similarity=0.154 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010679 50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQ 96 (504)
Q Consensus 50 ~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~ 96 (504)
.|++-|....+.|..+...+.++......++.++..++..+..+...
T Consensus 28 ~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~ 74 (219)
T TIGR02977 28 MIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEK 74 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444433
No 161
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=97.85 E-value=0.0045 Score=68.98 Aligned_cols=42 Identities=17% Similarity=0.052 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQIL 93 (504)
Q Consensus 52 EqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L 93 (504)
.+++..+..+++.+..+++++..+...+.++++.++.++.++
T Consensus 160 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~EL 201 (563)
T TIGR00634 160 VKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEEL 201 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444444443
No 162
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=97.85 E-value=0.0007 Score=77.36 Aligned_cols=25 Identities=8% Similarity=0.157 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 010679 205 LQVMEKNYITMATEVEKLRAELMNA 229 (504)
Q Consensus 205 lqemek~L~sme~EiekLraELekl 229 (504)
+.....+|...++-|..|-.+|..|
T Consensus 735 iaaAA~KLAECQeTI~sLGkQLksL 759 (769)
T PF05911_consen 735 IAAAAEKLAECQETIASLGKQLKSL 759 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334444444455555555555444
No 163
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=97.84 E-value=0.0033 Score=57.78 Aligned_cols=33 Identities=18% Similarity=0.323 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDL 160 (504)
Q Consensus 128 LkaELeqLr~ELqeL~aerqeL~aqvq~L~~EL 160 (504)
++.++..+..++..+..++..+..+...|...+
T Consensus 57 L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~l 89 (140)
T PF10473_consen 57 LEEELEELTSELNQLELELDTLRSEKENLDKEL 89 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 164
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=97.84 E-value=0.0093 Score=61.63 Aligned_cols=69 Identities=13% Similarity=0.134 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAK 117 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~k 117 (504)
..|+.-+..+++-.++....+..++..+..|-.+|++-++...+-.++-+++...++.+...|+.+|+-
T Consensus 89 ~iL~~mM~qcKnmQe~~~s~LaAaE~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEF 157 (561)
T KOG1103|consen 89 DILDKMMAQCKNMQENAASLLAAAEKKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEF 157 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444445555555544554444333333333333333444455555555443
No 165
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=97.83 E-value=0.008 Score=62.26 Aligned_cols=47 Identities=21% Similarity=0.286 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010679 52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG 98 (504)
Q Consensus 52 EqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~ 98 (504)
+++|+.+..+...+..++.++..++..++.....+..+.+.+..++.
T Consensus 21 eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~ 67 (309)
T PF09728_consen 21 EEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELS 67 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666666655555555555554443
No 166
>PF13514 AAA_27: AAA domain
Probab=97.83 E-value=0.0065 Score=72.93 Aligned_cols=36 Identities=25% Similarity=0.259 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010679 61 EMQKLATENQRLAATHGTLRQELAAAQHELQILHGQ 96 (504)
Q Consensus 61 EIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~ 96 (504)
+.+.+..++.++..++..++.++..++.++...+..
T Consensus 674 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (1111)
T PF13514_consen 674 RREQLEEELQQLEQELEEAEAELQEAQEALEEWQEE 709 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444
No 167
>PRK10698 phage shock protein PspA; Provisional
Probab=97.83 E-value=0.0066 Score=59.98 Aligned_cols=46 Identities=11% Similarity=0.135 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHG 95 (504)
Q Consensus 50 ~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~ 95 (504)
.|++-|....+.+..+...+.++..+...+++++..++.++..+..
T Consensus 28 ~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~ 73 (222)
T PRK10698 28 LVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQE 73 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444433
No 168
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.82 E-value=0.0064 Score=71.47 Aligned_cols=44 Identities=25% Similarity=0.292 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 010679 180 LRQEYHHCRGTYEYEKKFYND---HLESLQVMEKNYITMATEVEKLR 223 (504)
Q Consensus 180 LrqELq~LR~eLe~~kk~~~e---l~eqlqemek~L~sme~EiekLr 223 (504)
+..+++.++++++...+.+.. ..++++....++..+.++++++.
T Consensus 693 ~~~el~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 739 (908)
T COG0419 693 LEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLE 739 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444433333 33333333333333444444443
No 169
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=97.81 E-value=0.011 Score=70.44 Aligned_cols=53 Identities=13% Similarity=0.240 Sum_probs=35.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhcc
Q 010679 47 PPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQEL-------AAAQHELQILHGQIGG 99 (504)
Q Consensus 47 ~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqEL-------a~lqqEL~~L~~~L~~ 99 (504)
+...||+++.....+++.+..+.+....++.++...+ .++++++.+++..+..
T Consensus 103 s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~pq~~~~~~~~l~~i~~~L~~ 162 (1109)
T PRK10929 103 STDALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQT 162 (1109)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhchhhHHHHHHHHHHHHHHHhC
Confidence 3478889888888888888777776666664444444 5566666666655543
No 170
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=97.81 E-value=0.012 Score=58.48 Aligned_cols=15 Identities=13% Similarity=-0.055 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHH
Q 010679 50 VMEQKIASQHVEMQK 64 (504)
Q Consensus 50 ~LEqeLe~~~eEIq~ 64 (504)
...+.+..++.+|+.
T Consensus 70 seq~~~~~a~~elq~ 84 (330)
T KOG2991|consen 70 SEQDFKVMARDELQL 84 (330)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334555566666653
No 171
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.80 E-value=0.0087 Score=71.45 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAA 86 (504)
Q Consensus 52 EqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~l 86 (504)
+.++..+..+++.+......+..++..+.+.+..+
T Consensus 529 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (1047)
T PRK10246 529 QSRLDALEKEVKKLGEEGAALRGQLDALTKQLQRD 563 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555554444444444444443333333
No 172
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=97.80 E-value=0.00062 Score=78.81 Aligned_cols=6 Identities=67% Similarity=1.486 Sum_probs=2.3
Q ss_pred CCCCCC
Q 010679 449 APSYDP 454 (504)
Q Consensus 449 ~p~y~~ 454 (504)
||+|-|
T Consensus 1595 sp~ysp 1600 (1605)
T KOG0260|consen 1595 SPSYSP 1600 (1605)
T ss_pred CCCCCC
Confidence 334433
No 173
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=97.80 E-value=0.0083 Score=66.21 Aligned_cols=26 Identities=15% Similarity=0.310 Sum_probs=12.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 47 PPEVMEQKIASQHVEMQKLATENQRL 72 (504)
Q Consensus 47 ~~~~LEqeLe~~~eEIq~Le~e~qrL 72 (504)
.++.+.-+|..+.+|+..+..+++.+
T Consensus 110 e~a~lk~~l~e~~~El~~l~~~l~~l 135 (511)
T PF09787_consen 110 ELAVLKIRLQELDQELRRLRRQLEEL 135 (511)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455445555555555444444444
No 174
>PRK10869 recombination and repair protein; Provisional
Probab=97.79 E-value=0.0027 Score=70.64 Aligned_cols=25 Identities=4% Similarity=0.060 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 198 YNDHLESLQVMEKNYITMATEVEKL 222 (504)
Q Consensus 198 ~~el~eqlqemek~L~sme~EiekL 222 (504)
+.++++++..+.+++..+..+|.+.
T Consensus 343 l~~Le~e~~~l~~~l~~~A~~LS~~ 367 (553)
T PRK10869 343 LETLALAVEKHHQQALETAQKLHQS 367 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444333
No 175
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=97.79 E-value=0.016 Score=58.36 Aligned_cols=48 Identities=15% Similarity=0.288 Sum_probs=20.3
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 41 PFDMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQH 88 (504)
Q Consensus 41 ~~~~~p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqq 88 (504)
|+.++-..+.+..+|......+......+..++.++..|..++..+..
T Consensus 19 ~~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~ 66 (264)
T PF06008_consen 19 PYKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQE 66 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555544444433333333333333333333333333
No 176
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=97.79 E-value=0.0014 Score=58.74 Aligned_cols=70 Identities=20% Similarity=0.281 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHH
Q 010679 126 EPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEK 195 (504)
Q Consensus 126 e~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~k 195 (504)
+.+.++|..+..|+..++.++..|..+++.+..+|-++..+...+.....++..|+.++++++..++..-
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~L 88 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLL 88 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555555555544444444555555555555555444433
No 177
>PF12815 CTD: Spt5 C-terminal nonapeptide repeat binding Spt4; PDB: 2E70_A.
Probab=97.78 E-value=5.1e-06 Score=74.57 Aligned_cols=18 Identities=28% Similarity=0.278 Sum_probs=0.0
Q ss_pred CCCCC-CCCCCCCCCCCCC
Q 010679 433 GPGYD-LQRGQGYDMRRAP 450 (504)
Q Consensus 433 ~p~~~-~~~~~~~~~~~~p 450 (504)
+|++- ...++++..+.+|
T Consensus 103 TPg~~~~~~TPg~~~~~~p 121 (123)
T PF12815_consen 103 TPGAYNNAPTPGASAYSAP 121 (123)
T ss_dssp -------------------
T ss_pred ccccccccccccccccccc
Confidence 44443 2445554444444
No 178
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=97.78 E-value=0.0024 Score=75.77 Aligned_cols=16 Identities=13% Similarity=0.318 Sum_probs=11.4
Q ss_pred CCChHHHHHHHHHHHH
Q 010679 45 MPPPEVMEQKIASQHV 60 (504)
Q Consensus 45 ~p~~~~LEqeLe~~~e 60 (504)
+|..+.++++|+.+.+
T Consensus 22 ~p~~~~iq~~l~~~~~ 37 (1109)
T PRK10929 22 APDEKQITQELEQAKA 37 (1109)
T ss_pred CCCHHHHHHHHHHhhc
Confidence 5777788888886544
No 179
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.0035 Score=70.53 Aligned_cols=37 Identities=22% Similarity=0.160 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 57 SQHVEMQKLATENQRLAATHGTLRQELAAAQHELQIL 93 (504)
Q Consensus 57 ~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L 93 (504)
.+.++|+.+.....-|..++...-+..+..+.++.+|
T Consensus 437 ~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL 473 (698)
T KOG0978|consen 437 ELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKL 473 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444443333333333333333333333333333
No 180
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=97.77 E-value=0.0089 Score=64.23 Aligned_cols=57 Identities=9% Similarity=0.073 Sum_probs=34.2
Q ss_pred CChHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchH
Q 010679 46 PPPEVMEQKIASQHVEMQK--LATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS 102 (504)
Q Consensus 46 p~~~~LEqeLe~~~eEIq~--Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~a 102 (504)
+.|+....-++...+.... ++..+........-|+++|..++++|...+..+.+++.
T Consensus 141 ~dp~~A~~i~n~~~~~y~~~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~ 199 (444)
T TIGR03017 141 VDPRFAATVANAFAQAYIDTNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQ 199 (444)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555554444444443322 22334555666677777888888888888877777543
No 181
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=97.77 E-value=0.012 Score=55.88 Aligned_cols=16 Identities=38% Similarity=0.513 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 010679 107 QMRNLTEKIAKMEAEL 122 (504)
Q Consensus 107 eL~eL~eki~kLEaEL 122 (504)
+...|.++|++-..+|
T Consensus 50 en~~l~~kIeERn~eL 65 (177)
T PF13870_consen 50 ENQQLNEKIEERNKEL 65 (177)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 182
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=97.77 E-value=0.0035 Score=69.14 Aligned_cols=32 Identities=28% Similarity=0.233 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQ 158 (504)
Q Consensus 127 ~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ 158 (504)
.++.|.+.++.+++.+..++.++..+++.++.
T Consensus 278 ~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~ 309 (511)
T PF09787_consen 278 ELKQERDHLQEEIQLLERQIEQLRAELQDLEA 309 (511)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333333
No 183
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.77 E-value=0.01 Score=69.90 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 196 KFYNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 196 k~~~el~eqlqemek~L~sme~EiekLraELek 228 (504)
.....+.+.+.++.+.+..+.+++++++.++.+
T Consensus 403 ~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~ 435 (908)
T COG0419 403 AALEEIQEELEELEKELEELERELEELEEEIKK 435 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444333
No 184
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=97.76 E-value=0.0069 Score=58.72 Aligned_cols=19 Identities=37% Similarity=0.508 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHhhHHHHH
Q 010679 177 LESLRQEYHHCRGTYEYEK 195 (504)
Q Consensus 177 IeaLrqELq~LR~eLe~~k 195 (504)
+..|+.++++|+++|..++
T Consensus 133 ~~~l~~e~erL~aeL~~er 151 (202)
T PF06818_consen 133 LGSLRREVERLRAELQRER 151 (202)
T ss_pred chhHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 185
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=97.74 E-value=0.0024 Score=63.88 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 198 YNDHLESLQVMEKNYITMATEVEKLRAE 225 (504)
Q Consensus 198 ~~el~eqlqemek~L~sme~EiekLraE 225 (504)
+++|.+.+..--+....++.|+..|+..
T Consensus 164 ~e~L~ekynkeveerkrle~e~k~lq~k 191 (307)
T PF10481_consen 164 YEELQEKYNKEVEERKRLEAEVKALQAK 191 (307)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhcc
Confidence 3444444444334444555566666543
No 186
>PRK11281 hypothetical protein; Provisional
Probab=97.74 E-value=0.0093 Score=71.09 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHEL 90 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL 90 (504)
..+|++|....++++..+.++..+..++..++...+.++.++
T Consensus 124 ~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~l 165 (1113)
T PRK11281 124 RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAAL 165 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHH
Confidence 558888888888888777777777776666665444444333
No 187
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=97.73 E-value=0.0017 Score=74.12 Aligned_cols=29 Identities=7% Similarity=0.110 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 198 YNDHLESLQVMEKNYITMATEVEKLRAEL 226 (504)
Q Consensus 198 ~~el~eqlqemek~L~sme~EiekLraEL 226 (504)
...+++-+.++.+++..+-++|+.+++.|
T Consensus 687 ~~~I~~iL~~~~~~I~~~v~~ik~i~~~~ 715 (717)
T PF10168_consen 687 KRTIKEILKQQGEEIDELVKQIKNIKKIV 715 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555666666666666666554
No 188
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.70 E-value=0.004 Score=68.72 Aligned_cols=15 Identities=13% Similarity=0.142 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 010679 62 MQKLATENQRLAATH 76 (504)
Q Consensus 62 Iq~Le~e~qrLe~qi 76 (504)
.+.+..+++++...-
T Consensus 166 w~~~~~~l~~~~~~~ 180 (557)
T COG0497 166 WKQARRELEDLQEKE 180 (557)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 189
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=97.69 E-value=0.0061 Score=64.20 Aligned_cols=19 Identities=47% Similarity=0.595 Sum_probs=10.8
Q ss_pred CCCCCCCCCCCCCC-CCCCC
Q 010679 469 PHGQVPPPLNNVPY-GSATP 487 (504)
Q Consensus 469 ~~~~~~~~~~~~~~-~~~~~ 487 (504)
-|-|++|.+-.|-| -+|||
T Consensus 524 ~~p~~~Psla~v~~~q~atp 543 (552)
T KOG2129|consen 524 SHPQVAPSLATVHPTQRATP 543 (552)
T ss_pred cCcccCchhheecccccCCc
Confidence 37777776665544 44443
No 190
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.012 Score=62.64 Aligned_cols=34 Identities=15% Similarity=0.186 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 54 KIASQHVEMQKLATENQRLAATHGTLRQELAAAQ 87 (504)
Q Consensus 54 eLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lq 87 (504)
+++...++...+.++.......+.+|+++-....
T Consensus 235 el~eq~eeneel~ae~kqh~v~~~ales~~sq~~ 268 (521)
T KOG1937|consen 235 ELTEQNEENEELQAEYKQHLVEYKALESKRSQFE 268 (521)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4444444555555665555556666655444333
No 191
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=97.66 E-value=0.0095 Score=67.27 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=13.7
Q ss_pred ChHHHHHHHHHHHHHHHHH
Q 010679 47 PPEVMEQKIASQHVEMQKL 65 (504)
Q Consensus 47 ~~~~LEqeLe~~~eEIq~L 65 (504)
+-..|+.+|+.++++|-..
T Consensus 430 ~~~~Le~elekLk~eilKA 448 (762)
T PLN03229 430 PVRELEGEVEKLKEQILKA 448 (762)
T ss_pred CCccHHHHHHHHHHHHHhc
Confidence 3466788888888877655
No 192
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.66 E-value=0.029 Score=67.04 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAA 86 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~l 86 (504)
..+++++..+..++..+..++..+...+..+...+..+
T Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (1047)
T PRK10246 533 DALEKEVKKLGEEGAALRGQLDALTKQLQRDESEAQSL 570 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666655555555544444444444444433333
No 193
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.66 E-value=0.025 Score=63.27 Aligned_cols=17 Identities=18% Similarity=0.329 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010679 50 VMEQKIASQHVEMQKLA 66 (504)
Q Consensus 50 ~LEqeLe~~~eEIq~Le 66 (504)
..+.+++..+.....|.
T Consensus 95 ~~~~~~dr~~~~~~~l~ 111 (716)
T KOG4593|consen 95 NYEAEVDRKHKLLTRLR 111 (716)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445554444444333
No 194
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=97.64 E-value=0.035 Score=57.08 Aligned_cols=61 Identities=18% Similarity=0.150 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccc
Q 010679 171 PALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKN-YITMATEVEKLRAELMNAPN 231 (504)
Q Consensus 171 ~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~-L~sme~EiekLraELekle~ 231 (504)
..|...|..|..+...+..+++.+++.+.+++..+..-++. +..|-+.+.+|.++-..|+.
T Consensus 138 ~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~ 199 (310)
T PF09755_consen 138 NKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQE 199 (310)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555544332222 23455666666665555443
No 195
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=97.64 E-value=0.024 Score=56.42 Aligned_cols=29 Identities=17% Similarity=0.215 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 67 TENQRLAATHGTLRQELAAAQHELQILHG 95 (504)
Q Consensus 67 ~e~qrLe~qi~~LkqELa~lqqEL~~L~~ 95 (504)
.+...+...+...-.++..++.+|..++.
T Consensus 38 ~~~~~~~~~i~~aP~~~~~l~~~l~~l~~ 66 (240)
T PF12795_consen 38 KRAAEYQKQIDQAPKEIRELQKELEALKS 66 (240)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhhc
Confidence 33444444444444455555555555544
No 196
>PF13166 AAA_13: AAA domain
Probab=97.64 E-value=0.011 Score=67.22 Aligned_cols=52 Identities=12% Similarity=0.172 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010679 178 ESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 229 (504)
Q Consensus 178 eaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekl 229 (504)
..++.+++.+..+++..+..+..+..++.+++.++.....-++.+..+|..+
T Consensus 420 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 420 KELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3333344444444444444444455555555555554455555555666555
No 197
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=97.64 E-value=0.0096 Score=66.40 Aligned_cols=41 Identities=12% Similarity=0.029 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010679 59 HVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG 99 (504)
Q Consensus 59 ~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~ 99 (504)
..+++.+..+.+++..++.+++.+....+++++.++.++++
T Consensus 160 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~E 200 (563)
T TIGR00634 160 VKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEE 200 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555555555555555555544
No 198
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.62 E-value=0.0066 Score=70.33 Aligned_cols=35 Identities=9% Similarity=0.210 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQ 161 (504)
Q Consensus 127 ~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq 161 (504)
..+.+...++.+++++..++..+....+.++.+++
T Consensus 314 ~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~ 348 (1141)
T KOG0018|consen 314 TAKKDYRALKETIERLEKELKAVEGAKEEFEKEIE 348 (1141)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555555555555555544
No 199
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=97.61 E-value=0.01 Score=66.81 Aligned_cols=48 Identities=13% Similarity=0.070 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 178 ESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAE 225 (504)
Q Consensus 178 eaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraE 225 (504)
..++.|++++-..++.++-+++..+++-+-+.--|..-..||.+|+.-
T Consensus 497 ~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eL 544 (861)
T PF15254_consen 497 TRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLREL 544 (861)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHH
Confidence 334444444444444444444433333333333333334444444433
No 200
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=97.60 E-value=0.00026 Score=68.31 Aligned_cols=13 Identities=46% Similarity=0.774 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH
Q 010679 110 NLTEKIAKMEAEL 122 (504)
Q Consensus 110 eL~eki~kLEaEL 122 (504)
.+..++.++..||
T Consensus 71 ~le~~~~~l~~EL 83 (194)
T PF08614_consen 71 SLEQKLAKLQEEL 83 (194)
T ss_dssp -------------
T ss_pred ccccccccccccc
Confidence 3334444444443
No 201
>PLN03188 kinesin-12 family protein; Provisional
Probab=97.60 E-value=0.023 Score=67.34 Aligned_cols=64 Identities=22% Similarity=0.212 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHH--------------HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHh
Q 010679 170 IPALLSELESLRQEYHHCRGTYEYEKKFYN--------------DHLESLQVME-------KNYITMATEVEKLRAELMN 228 (504)
Q Consensus 170 l~~L~~EIeaLrqELq~LR~eLe~~kk~~~--------------el~eqlqeme-------k~L~sme~EiekLraELek 228 (504)
+..|.+||.+|+.|.++-|.-+..+++.+. +|.-++++.| ++...+++|.+++.++|+|
T Consensus 1157 ~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~k 1236 (1320)
T PLN03188 1157 INALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDK 1236 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777665544433333322221 2222233332 3334466777778887888
Q ss_pred ccccc
Q 010679 229 APNVD 233 (504)
Q Consensus 229 le~~~ 233 (504)
|++.|
T Consensus 1237 lkrkh 1241 (1320)
T PLN03188 1237 LKRKH 1241 (1320)
T ss_pred HHHHH
Confidence 77655
No 202
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.022 Score=60.80 Aligned_cols=9 Identities=0% Similarity=0.029 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 010679 55 IASQHVEMQ 63 (504)
Q Consensus 55 Le~~~eEIq 63 (504)
|+.+.++.+
T Consensus 233 ~eel~eq~e 241 (521)
T KOG1937|consen 233 VEELTEQNE 241 (521)
T ss_pred HHHHHhhhh
Confidence 444444443
No 203
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=97.59 E-value=0.078 Score=53.03 Aligned_cols=12 Identities=25% Similarity=0.410 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 010679 216 ATEVEKLRAELM 227 (504)
Q Consensus 216 e~EiekLraELe 227 (504)
..||..++..|.
T Consensus 203 ~~Ei~~lk~~l~ 214 (247)
T PF06705_consen 203 LEEIAALKNALA 214 (247)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 204
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=97.59 E-value=0.027 Score=64.70 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010679 203 ESLQVMEKNYITMATEVEKLRAE 225 (504)
Q Consensus 203 eqlqemek~L~sme~EiekLraE 225 (504)
+|..+--+++..++.|-.+|+.-
T Consensus 183 kqhle~vkkiakLEaEC~rLr~l 205 (769)
T PF05911_consen 183 KQHLESVKKIAKLEAECQRLRAL 205 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444445444444433
No 205
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=97.58 E-value=0.019 Score=62.66 Aligned_cols=55 Identities=24% Similarity=0.345 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010679 173 LLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP 230 (504)
Q Consensus 173 L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle 230 (504)
+..++..+...+.+|+.+|+..+..+ ++|+..|-+.|..|...|.+-+.+|+.++
T Consensus 460 l~eeL~~a~~~i~~LqDEL~TTr~NY---E~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 460 LEEELKEANQNISRLQDELETTRRNY---EEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455556666666666655554443 34677777777778888888888877765
No 206
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.58 E-value=0.032 Score=58.82 Aligned_cols=73 Identities=15% Similarity=0.203 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKT 124 (504)
Q Consensus 52 EqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~e 124 (504)
+..-.++..+=+.|..++..+..+..+|+.-+...++++......|-......+..+..|+..|.+++.++.+
T Consensus 291 dt~w~~lqkegrqlqrdlE~~~~~r~ele~~~~qs~ed~t~q~~~ll~~~q~sE~ll~tlq~~iSqaq~~vq~ 363 (542)
T KOG0993|consen 291 DTLWFILQKEGRQLQRDLEELIETRAELEHTEQQSQEDITVQRAQLLEERQHSEDLLVTLQAEISQAQSEVQK 363 (542)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555555555555555554444443333222223344556666666666665543
No 207
>PRK10869 recombination and repair protein; Provisional
Probab=97.57 E-value=0.018 Score=64.13 Aligned_cols=24 Identities=8% Similarity=-0.064 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 191 YEYEKKFYNDHLESLQVMEKNYIT 214 (504)
Q Consensus 191 Le~~kk~~~el~eqlqemek~L~s 214 (504)
++.+++++.++.+++.++.++|..
T Consensus 343 l~~Le~e~~~l~~~l~~~A~~LS~ 366 (553)
T PRK10869 343 LETLALAVEKHHQQALETAQKLHQ 366 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555554444443
No 208
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=97.57 E-value=0.01 Score=56.95 Aligned_cols=113 Identities=21% Similarity=0.237 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccc-hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 010679 54 KIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHG-QIGGM-KSERELQMRNLTEKIAKMEAELKTAEPVKLE 131 (504)
Q Consensus 54 eLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~-~L~~l-~ae~E~eL~eL~eki~kLEaEL~ele~LkaE 131 (504)
+|.+..++.+....-+++|...+...++.+..+...+..-.. ..... ..........|.+.+.+|++|....+.|..-
T Consensus 3 rl~a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qv 82 (182)
T PF15035_consen 3 RLDAYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQV 82 (182)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHH
Confidence 455555555555555566666666666555555555522100 00000 0000111234555566666665555554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 132 FQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTD 166 (504)
Q Consensus 132 LeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~e 166 (504)
-.-|+.++++....-+.|...++.|+.++..+..+
T Consensus 83 N~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~e 117 (182)
T PF15035_consen 83 NALLREQLEQARKANEALQEDLQKLTQDWERLRDE 117 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555544443
No 209
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=97.57 E-value=0.043 Score=52.24 Aligned_cols=162 Identities=16% Similarity=0.203 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch-------HHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 54 KIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMK-------SERELQMRNLTEKIAKMEAELKTAE 126 (504)
Q Consensus 54 eLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~-------ae~E~eL~eL~eki~kLEaEL~ele 126 (504)
-|..+.++|.+|+-+....+..+..|..+....+.-+......-.... .++..++.....+..-||.+
T Consensus 5 ALK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEKQ----- 79 (178)
T PF14073_consen 5 ALKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEKQ----- 79 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHHH-----
Confidence 466777888888888777777777776665554433332211111111 12222233333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 010679 127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQ 206 (504)
Q Consensus 127 ~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlq 206 (504)
|+-++.-+.....++..+..+-..|..+-. .+...+..-...++.|..|+.+|...-.....++..|++++.
T Consensus 80 -----LeyMRkmv~~ae~er~~~le~q~~l~~e~~---~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~ 151 (178)
T PF14073_consen 80 -----LEYMRKMVESAEKERNAVLEQQVSLQRERQ---QDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQ 151 (178)
T ss_pred -----HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333233222222111111110 111122233344666667777776666666666667777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 010679 207 VMEKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 207 emek~L~sme~EiekLraELek 228 (504)
+-+.+..-+...-.+|+..++.
T Consensus 152 eEehqRKlvQdkAaqLQt~lE~ 173 (178)
T PF14073_consen 152 EEEHQRKLVQDKAAQLQTGLET 173 (178)
T ss_pred HHHHHHHHHHHHHHHHHhhHHH
Confidence 6655555555555566665553
No 210
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=97.56 E-value=0.03 Score=53.19 Aligned_cols=13 Identities=15% Similarity=0.417 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 010679 215 MATEVEKLRAELM 227 (504)
Q Consensus 215 me~EiekLraELe 227 (504)
++++|..++..++
T Consensus 157 l~~~i~~l~rk~~ 169 (177)
T PF13870_consen 157 LRKEIKELERKVE 169 (177)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444333
No 211
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=97.56 E-value=0.0043 Score=55.62 Aligned_cols=83 Identities=18% Similarity=0.221 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 010679 127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQ 206 (504)
Q Consensus 127 ~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlq 206 (504)
.+..|+..++.++..+..++..+..++-.|..+...++...+++..++.++++|+..++.+-.-+-.....+++|+..++
T Consensus 27 ~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~ 106 (120)
T PF12325_consen 27 RLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQ 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 34444555555555555555556666666666665555555556666666666666666555554444444445544444
Q ss_pred HHH
Q 010679 207 VME 209 (504)
Q Consensus 207 eme 209 (504)
++.
T Consensus 107 DlK 109 (120)
T PF12325_consen 107 DLK 109 (120)
T ss_pred HHH
Confidence 443
No 212
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.004 Score=67.04 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLR 80 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~Lk 80 (504)
+.|.++|..+.+++......+..+.+++.+|+
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLq 368 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIGERVTELQ 368 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888887777766666666666666665
No 213
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.55 E-value=0.018 Score=61.00 Aligned_cols=16 Identities=19% Similarity=0.189 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 010679 59 HVEMQKLATENQRLAA 74 (504)
Q Consensus 59 ~eEIq~Le~e~qrLe~ 74 (504)
..++..|+.+.+.|..
T Consensus 221 ~~kv~flerkv~eled 236 (502)
T KOG0982|consen 221 ERKVRFLERKVQELED 236 (502)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 3333444444333333
No 214
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=97.55 E-value=0.004 Score=70.19 Aligned_cols=12 Identities=17% Similarity=0.429 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHh
Q 010679 217 TEVEKLRAELMN 228 (504)
Q Consensus 217 ~EiekLraELek 228 (504)
..|+.|+.+|.+
T Consensus 695 ~kieal~~qik~ 706 (762)
T PLN03229 695 EKIEALEQQIKQ 706 (762)
T ss_pred HHHHHHHHHHHH
Confidence 556666666664
No 215
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=97.54 E-value=0.019 Score=56.96 Aligned_cols=47 Identities=23% Similarity=0.272 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010679 50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQ 96 (504)
Q Consensus 50 ~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~ 96 (504)
.|++.|.....++..+.....++......++.++..++.+...++..
T Consensus 28 ~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~ 74 (225)
T COG1842 28 MLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEK 74 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444433
No 216
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=97.54 E-value=0.026 Score=59.19 Aligned_cols=54 Identities=13% Similarity=0.180 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Q 010679 175 SELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYI----TMATEVEKLRAELMN 228 (504)
Q Consensus 175 ~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~----sme~EiekLraELek 228 (504)
.||.=|++|+..|+.+|+...+.+.....+.+++-.+|. ....+|.+|+..|..
T Consensus 519 sEiQYLKqEissLkDELQtalrDKkyaSdKYkDiYtELSiaKakadcdIsrLKEqLka 576 (593)
T KOG4807|consen 519 SEIQYLKQEISSLKDELQTALRDKKYASDKYKDIYTELSIAKAKADCDISRLKEQLKA 576 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHhhhccHHHHHHHHHH
Confidence 345555555555555555554444444444444433332 234566666666644
No 217
>PF12815 CTD: Spt5 C-terminal nonapeptide repeat binding Spt4; PDB: 2E70_A.
Probab=97.53 E-value=1.9e-05 Score=70.89 Aligned_cols=6 Identities=17% Similarity=0.772 Sum_probs=0.0
Q ss_pred CCCCCC
Q 010679 352 KGPGYD 357 (504)
Q Consensus 352 ~~p~y~ 357 (504)
|+|+|+
T Consensus 34 rTPa~~ 39 (123)
T PF12815_consen 34 RTPAWG 39 (123)
T ss_dssp ------
T ss_pred cCcccc
Confidence 444443
No 218
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=97.53 E-value=0.007 Score=71.83 Aligned_cols=6 Identities=33% Similarity=0.673 Sum_probs=2.1
Q ss_pred HHHHHH
Q 010679 177 LESLRQ 182 (504)
Q Consensus 177 IeaLrq 182 (504)
+..++.
T Consensus 887 ~~~l~e 892 (1294)
T KOG0962|consen 887 IEELSE 892 (1294)
T ss_pred HHHHHH
Confidence 333333
No 219
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=97.53 E-value=0.025 Score=59.29 Aligned_cols=24 Identities=8% Similarity=0.279 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 49 EVMEQKIASQHVEMQKLATENQRL 72 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrL 72 (504)
+.|+++|..++..+.....+...+
T Consensus 294 ~~L~k~vQ~L~AQle~~R~q~e~~ 317 (593)
T KOG4807|consen 294 EALEKEVQALRAQLEAWRLQGEAP 317 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCc
Confidence 667788888777776655444433
No 220
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=97.53 E-value=0.0078 Score=67.74 Aligned_cols=30 Identities=17% Similarity=0.381 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 131 EFQKSKTEAQNLVVAREELIAKVHQLTQDL 160 (504)
Q Consensus 131 ELeqLr~ELqeL~aerqeL~aqvq~L~~EL 160 (504)
+...++.+++++..+.+.+..++++|..+|
T Consensus 1003 ~mrdhrselEe~kKe~eaiineiee~eaeI 1032 (1424)
T KOG4572|consen 1003 EMRDHRSELEEKKKELEAIINEIEELEAEI 1032 (1424)
T ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555554
No 221
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=97.52 E-value=0.048 Score=59.43 Aligned_cols=123 Identities=16% Similarity=0.206 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhh--hhhHHHHHHHHHH
Q 010679 106 LQMRNLTEKIAKMEAELKTAE-PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAH-TDVQ--QIPALLSELESLR 181 (504)
Q Consensus 106 ~eL~eL~eki~kLEaEL~ele-~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~-~elq--ql~~L~~EIeaLr 181 (504)
.++..+.+.+..++.++.+++ .+..+.+....++..+....++|..+.+.|-.+|=..+ .... .-..+..-+.=++
T Consensus 67 ~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~ 146 (475)
T PRK10361 67 NEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLR 146 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 344445555555555544443 33334444444555555555666666666655551111 1110 0112222244455
Q ss_pred HHHHHHHhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 182 QEYHHCRGTYEYEK----KFYNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 182 qELq~LR~eLe~~k----k~~~el~eqlqemek~L~sme~EiekLraELek 228 (504)
+.|+..+..++... +....|.++++.|.+.-..|..|-.+|..-|..
T Consensus 147 e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ALkg 197 (475)
T PRK10361 147 EQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTRALKG 197 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 55555555555432 344566666666666666667777777766644
No 222
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=97.51 E-value=0.0088 Score=64.51 Aligned_cols=83 Identities=14% Similarity=0.157 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 141 NLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVE 220 (504)
Q Consensus 141 eL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~Eie 220 (504)
.+..++.++..++..+.++|+.+..++ .....++..|..+|.+++.++.++.-+++++.+.++.+...-..|..|++
T Consensus 202 ~~~KelrdtN~q~~s~~eel~~kt~el---~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~ 278 (596)
T KOG4360|consen 202 DCVKELRDTNTQARSGQEELQSKTKEL---SRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELE 278 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 444445555555555555555544443 33455666677777777777777766677777777776666555555555
Q ss_pred HHHHHH
Q 010679 221 KLRAEL 226 (504)
Q Consensus 221 kLraEL 226 (504)
.++.+-
T Consensus 279 EleDky 284 (596)
T KOG4360|consen 279 ELEDKY 284 (596)
T ss_pred HHHHHH
Confidence 555443
No 223
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=97.51 E-value=0.0048 Score=67.76 Aligned_cols=45 Identities=7% Similarity=0.104 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQIL 93 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L 93 (504)
..++++|..+....+.|.-+..-|.+++++..++|..++--|+..
T Consensus 107 ~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~k 151 (861)
T KOG1899|consen 107 PEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEK 151 (861)
T ss_pred hHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 344445544444444444444444444444444444444333333
No 224
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=97.51 E-value=0.016 Score=52.63 Aligned_cols=16 Identities=25% Similarity=0.362 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 010679 128 VKLEFQKSKTEAQNLV 143 (504)
Q Consensus 128 LkaELeqLr~ELqeL~ 143 (504)
++.++..++.++..++
T Consensus 64 lr~e~~~~~~~~~~l~ 79 (132)
T PF07926_consen 64 LREELQELQQEINELK 79 (132)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 225
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.027 Score=61.31 Aligned_cols=67 Identities=28% Similarity=0.376 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchH----------HHHHHHHHHHHHHHHHHHHHHHH
Q 010679 59 HVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS----------ERELQMRNLTEKIAKMEAELKTA 125 (504)
Q Consensus 59 ~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~a----------e~E~eL~eL~eki~kLEaEL~el 125 (504)
.++|+..+.++++|.+.+..|+.+|......+..++++...+.+ .++.-|..-.+++.+|+++|.+.
T Consensus 330 ~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkA 406 (654)
T KOG4809|consen 330 LEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKA 406 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777788888888888877777666666666665444332 34445566667777888877643
No 226
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=97.50 E-value=0.042 Score=59.88 Aligned_cols=52 Identities=10% Similarity=0.150 Sum_probs=36.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010679 47 PPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG 98 (504)
Q Consensus 47 ~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~ 98 (504)
.+..+|+.|+...+.|+.+...+..|..+-+....++..+....+.|+..+.
T Consensus 105 ~i~~ie~~l~~iE~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr~~vl 156 (570)
T COG4477 105 EIDDIEQQLTLIEEDIEQILEDLNELVESEEKNSEEIDHVLELYEELRRDVL 156 (570)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3466778888888888887777777777776666666666666666655543
No 227
>PLN02939 transferase, transferring glycosyl groups
Probab=97.50 E-value=0.014 Score=68.21 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010679 141 NLVVAREELIAKVHQLTQDLQ 161 (504)
Q Consensus 141 eL~aerqeL~aqvq~L~~ELq 161 (504)
.+..++.-|.+.+.+|+..+.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~ 281 (977)
T PLN02939 261 KLEKERSLLDASLRELESKFI 281 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555554443
No 228
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=97.49 E-value=0.019 Score=54.70 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHh-HHHHHHHHHHH
Q 010679 109 RNLTEKIAKMEAELKTAE-PVKLEFQKSKT 137 (504)
Q Consensus 109 ~eL~eki~kLEaEL~ele-~LkaELeqLr~ 137 (504)
..|....++|+.++..++ .++.|+..++.
T Consensus 76 ~~lr~~~e~L~~eie~l~~~L~~ei~~l~a 105 (177)
T PF07798_consen 76 AELRSENEKLQREIEKLRQELREEINKLRA 105 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444433332 23344444443
No 229
>PLN02939 transferase, transferring glycosyl groups
Probab=97.49 E-value=0.018 Score=67.36 Aligned_cols=13 Identities=38% Similarity=0.531 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 010679 148 ELIAKVHQLTQDL 160 (504)
Q Consensus 148 eL~aqvq~L~~EL 160 (504)
+|..++++|+..|
T Consensus 328 ~~~~~~~~~~~~~ 340 (977)
T PLN02939 328 DLRDKVDKLEASL 340 (977)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444333
No 230
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=97.49 E-value=0.0038 Score=71.70 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 010679 76 HGTLRQELAAAQHELQILHGQI 97 (504)
Q Consensus 76 i~~LkqELa~lqqEL~~L~~~L 97 (504)
++-|.++|..++++|...+..+
T Consensus 269 ~~fL~~qL~~l~~~L~~aE~~l 290 (726)
T PRK09841 269 LEFLQRQLPEVRSELDQAEEKL 290 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444433333
No 231
>PF13166 AAA_13: AAA domain
Probab=97.46 E-value=0.056 Score=61.62 Aligned_cols=10 Identities=10% Similarity=0.298 Sum_probs=5.1
Q ss_pred hHHHHHHHHH
Q 010679 48 PEVMEQKIAS 57 (504)
Q Consensus 48 ~~~LEqeLe~ 57 (504)
...+.++|+.
T Consensus 267 ~~~~~~~l~~ 276 (712)
T PF13166_consen 267 SEERKERLEK 276 (712)
T ss_pred cHHHHHHHHH
Confidence 3445556654
No 232
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.45 E-value=0.077 Score=59.31 Aligned_cols=11 Identities=36% Similarity=0.347 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 010679 77 GTLRQELAAAQ 87 (504)
Q Consensus 77 ~~LkqELa~lq 87 (504)
+.|.++|..++
T Consensus 292 e~L~~eL~~~K 302 (786)
T PF05483_consen 292 EHLLQELEDIK 302 (786)
T ss_pred HHHHHHHHHHH
Confidence 33333443333
No 233
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=97.44 E-value=0.099 Score=53.71 Aligned_cols=9 Identities=11% Similarity=0.434 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 010679 177 LESLRQEYH 185 (504)
Q Consensus 177 IeaLrqELq 185 (504)
++.+...+.
T Consensus 252 ~ekmtKk~k 260 (391)
T KOG1850|consen 252 MEKMTKKIK 260 (391)
T ss_pred HHHHHHHHH
Confidence 333333333
No 234
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=97.42 E-value=0.019 Score=66.93 Aligned_cols=13 Identities=15% Similarity=0.450 Sum_probs=7.9
Q ss_pred CChHHHHHHHHHH
Q 010679 46 PPPEVMEQKIASQ 58 (504)
Q Consensus 46 p~~~~LEqeLe~~ 58 (504)
|.+..||+.|.-+
T Consensus 369 Pa~~~lEETlSTL 381 (1041)
T KOG0243|consen 369 PAKHNLEETLSTL 381 (1041)
T ss_pred CCcccHHHHHHHH
Confidence 5556667666544
No 235
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=97.42 E-value=0.0018 Score=62.45 Aligned_cols=29 Identities=31% Similarity=0.342 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 51 MEQKIASQHVEMQKLATENQRLAATHGTL 79 (504)
Q Consensus 51 LEqeLe~~~eEIq~Le~e~qrLe~qi~~L 79 (504)
+++.+..+..|+..+...+..+..++..+
T Consensus 72 le~~~~~l~~ELael~r~~~el~~~L~~~ 100 (194)
T PF08614_consen 72 LEQKLAKLQEELAELYRSKGELAQQLVEL 100 (194)
T ss_dssp -----------------------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 33444444444444333333333333333
No 236
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.41 E-value=3.4e-05 Score=89.64 Aligned_cols=31 Identities=35% Similarity=0.340 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 130 LEFQKSKTEAQNLVVAREELIAKVHQLTQDL 160 (504)
Q Consensus 130 aELeqLr~ELqeL~aerqeL~aqvq~L~~EL 160 (504)
.++..++.++.++...+..|..+...|..+|
T Consensus 412 te~~~Lk~~lee~~e~~e~lere~k~L~~El 442 (859)
T PF01576_consen 412 TELFKLKNELEELQEQLEELERENKQLQDEL 442 (859)
T ss_dssp -------------------------------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 3333344444443333333333333443333
No 237
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=97.41 E-value=0.042 Score=62.65 Aligned_cols=16 Identities=31% Similarity=0.627 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 010679 108 MRNLTEKIAKMEAELK 123 (504)
Q Consensus 108 L~eL~eki~kLEaEL~ 123 (504)
+..|.+.+.+|+.+++
T Consensus 93 ~~dl~e~vsqm~~~vK 108 (683)
T PF08580_consen 93 LFDLIEEVSQMELDVK 108 (683)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 238
>PRK11519 tyrosine kinase; Provisional
Probab=97.40 E-value=0.007 Score=69.44 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=9.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHH
Q 010679 182 QEYHHCRGTYEYEKKFYNDHLESL 205 (504)
Q Consensus 182 qELq~LR~eLe~~kk~~~el~eql 205 (504)
.++.+|+.+.+..++.+..+.+++
T Consensus 370 ~~~~~L~Re~~~~~~lY~~lL~r~ 393 (719)
T PRK11519 370 QEIVRLTRDVESGQQVYMQLLNKQ 393 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333343433333
No 239
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=97.40 E-value=0.003 Score=69.29 Aligned_cols=12 Identities=17% Similarity=0.108 Sum_probs=6.0
Q ss_pred HHHHHHHHHhcc
Q 010679 219 VEKLRAELMNAP 230 (504)
Q Consensus 219 iekLraELekle 230 (504)
+++|+.-|+.+.
T Consensus 276 d~~lk~a~eslm 287 (861)
T KOG1899|consen 276 DNTLKNALESLM 287 (861)
T ss_pred HHHHHHHHHHHH
Confidence 345555555543
No 240
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=97.40 E-value=0.073 Score=50.72 Aligned_cols=16 Identities=25% Similarity=0.536 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 010679 107 QMRNLTEKIAKMEAEL 122 (504)
Q Consensus 107 eL~eL~eki~kLEaEL 122 (504)
+++.|.++..+.-.++
T Consensus 83 eir~LA~~t~~~~~~I 98 (213)
T PF00015_consen 83 EIRKLAEQTSESAKEI 98 (213)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhHHHHH
Confidence 4455554444444443
No 241
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=97.40 E-value=0.18 Score=50.41 Aligned_cols=89 Identities=12% Similarity=0.160 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------hhh
Q 010679 106 LQMRNLTEKIAKMEAELKTA-----EPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ---------QIP 171 (504)
Q Consensus 106 ~eL~eL~eki~kLEaEL~el-----e~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elq---------ql~ 171 (504)
.++.++.++|..+.++.... .....|.-.+-.-+..+-.+|..+-...+.+..+|++.+..+. ++.
T Consensus 83 ~~laev~~ki~~~~~~qa~~d~~~l~e~L~eYiR~i~svK~~f~~R~k~~~~~~~a~~~L~kkr~~~~Kl~~~~k~dK~~ 162 (234)
T cd07664 83 SQLAEVEEKIDQLHQDQAFADFYLFSELLGDYIRLIAAVKGVFDQRMKCWQKWQDAQVTLQKKREAEAKLQYANKPDKLQ 162 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHH
Confidence 34555555555554443322 2233344444444555555555555555556555554443322 233
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHH
Q 010679 172 ALLSELESLRQEYHHCRGTYEYE 194 (504)
Q Consensus 172 ~L~~EIeaLrqELq~LR~eLe~~ 194 (504)
.++.+|.+++.....++.+++..
T Consensus 163 ~~~~ev~~~e~~~~~a~~~fe~I 185 (234)
T cd07664 163 QAKDEIKEWEAKVQQGERDFEQI 185 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 242
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=97.40 E-value=0.063 Score=64.12 Aligned_cols=122 Identities=17% Similarity=0.183 Sum_probs=55.7
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc------chHHHHHHHHHHHHHHH
Q 010679 43 DMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG------MKSERELQMRNLTEKIA 116 (504)
Q Consensus 43 ~~~p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~------l~ae~E~eL~eL~eki~ 116 (504)
-+|--|..|..++...-+......+ +..+..-+.+..+++...+..|..++...+. ...+.+..+....+++.
T Consensus 162 WPLsEp~~LKkkfD~IF~~tky~KA-ld~~kk~rkd~~~evk~~~~~l~~lk~~K~~~e~~~l~i~~~~~ki~~~ke~v~ 240 (1294)
T KOG0962|consen 162 WPLSEPKNLKKKFDDIFSATKYTKA-LDSLKKLRKDQSQEVKTKKQELEHLKTLKERAEVLRLNIHSGQRKIEKSKEEVS 240 (1294)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888766665443322 1222222222222333233333222222111 01123344444555555
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 117 KMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT 165 (504)
Q Consensus 117 kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~ 165 (504)
+++.++..++....+|.....+++++..+...|..+...++.++..+..
T Consensus 241 e~e~e~~~~~~~i~ei~~~~~el~k~~~~~~~l~~e~~~l~~~~~~l~~ 289 (1294)
T KOG0962|consen 241 ELENELGPIEAKIEEIEKSLKELEKLLKQVKLLDSEHKNLKKQISRLRE 289 (1294)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555444455555555555555555555555555555554443
No 243
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=97.39 E-value=0.066 Score=60.08 Aligned_cols=49 Identities=18% Similarity=0.243 Sum_probs=30.9
Q ss_pred HHHHHHHhhHHHHHHHHH-HHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcc
Q 010679 182 QEYHHCRGTYEYEKKFYN-DHLESLQVME----KNYITMATEVEKLRAELMNAP 230 (504)
Q Consensus 182 qELq~LR~eLe~~kk~~~-el~eqlqeme----k~L~sme~EiekLraELekle 230 (504)
.+...+|.++...+..+. .+.+++.+++ ++|..|++.+...++|..|+.
T Consensus 556 eea~~lR~EL~~QQ~~y~~alqekvsevEsrl~E~L~~~E~rLNeARREHtKaV 609 (739)
T PF07111_consen 556 EEAAELRRELTQQQEVYERALQEKVSEVESRLREQLSEMEKRLNEARREHTKAV 609 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555554444 4444555544 456678899999999999986
No 244
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=97.39 E-value=0.0053 Score=65.98 Aligned_cols=60 Identities=17% Similarity=0.297 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHH
Q 010679 136 KTEAQNLVVAREELIAKVHQLTQDLQR--AHTDVQQIPALLSELESLRQEYHHCRGTYEYEK 195 (504)
Q Consensus 136 r~ELqeL~aerqeL~aqvq~L~~ELq~--l~~elqql~~L~~EIeaLrqELq~LR~eLe~~k 195 (504)
..+.+.|...+.+|+.-|+.|..++.. .+-...++..+..+|..+..+|..+..-|..++
T Consensus 212 ~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~k 273 (424)
T PF03915_consen 212 SEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEK 273 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333444444445555555555544422 222344566777777777777777776666554
No 245
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=97.39 E-value=0.041 Score=52.88 Aligned_cols=34 Identities=12% Similarity=0.303 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQ 161 (504)
Q Consensus 128 LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq 161 (504)
|+..+++.+...+.|..++..|..+...+..+|.
T Consensus 86 LReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444443
No 246
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.39 E-value=0.041 Score=61.73 Aligned_cols=45 Identities=9% Similarity=0.064 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010679 52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQ 96 (504)
Q Consensus 52 EqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~ 96 (504)
..+++.+++.++.++...+-+-..+...+.++..+++++..+.+.
T Consensus 615 ~~Kv~TL~~~~k~~~~~~~~~~~~i~~~q~e~~klqeq~~Al~~i 659 (1104)
T COG4913 615 DAKVETLRETVKAMLSREDFYMIKIMRQQGEYIKLQEQANALAHI 659 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666666666666665555443
No 247
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=97.39 E-value=0.047 Score=56.32 Aligned_cols=35 Identities=17% Similarity=0.120 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR 162 (504)
Q Consensus 128 LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~ 162 (504)
++.|-..++.+|+.+..++.+.+.+.++|..||.+
T Consensus 139 ~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE 173 (401)
T PF06785_consen 139 LREENQCLQLQLDALQQECGEKEEESQTLNRELAE 173 (401)
T ss_pred HHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555543
No 248
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=97.39 E-value=0.038 Score=54.97 Aligned_cols=34 Identities=12% Similarity=0.277 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 010679 67 TENQRLAATHGTLRQELAAAQHELQILHGQIGGM 100 (504)
Q Consensus 67 ~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l 100 (504)
.+.++.......+++.|..+-.++..++.+|..+
T Consensus 31 ~~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l 64 (240)
T PF12795_consen 31 DEIKKQKKRAAEYQKQIDQAPKEIRELQKELEAL 64 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 3456667777777777888888888888777665
No 249
>PRK10698 phage shock protein PspA; Provisional
Probab=97.37 E-value=0.056 Score=53.47 Aligned_cols=12 Identities=17% Similarity=0.548 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q 010679 215 MATEVEKLRAEL 226 (504)
Q Consensus 215 me~EiekLraEL 226 (504)
++.||..|++++
T Consensus 206 ve~ELa~LK~~~ 217 (222)
T PRK10698 206 ISEQLAALKAKM 217 (222)
T ss_pred HHHHHHHHHHHh
Confidence 445555555443
No 250
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.37 E-value=4.1e-05 Score=87.54 Aligned_cols=32 Identities=13% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccc
Q 010679 200 DHLESLQVMEKNYITM---ATEVEKLRAELMNAPN 231 (504)
Q Consensus 200 el~eqlqemek~L~sm---e~EiekLraELekle~ 231 (504)
-++++...++.++..+ +.++..++-++..|+.
T Consensus 285 lLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~ 319 (722)
T PF05557_consen 285 LLEEEKRSLQRKLERLEELEEELAELQLENEKLED 319 (722)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445455444433 3445555545555443
No 251
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=97.36 E-value=0.026 Score=52.15 Aligned_cols=55 Identities=13% Similarity=0.294 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 109 RNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRA 163 (504)
Q Consensus 109 ~eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l 163 (504)
.-+.+-|...+.++...+.+..++..+..++..+...+..|+.++..++.++..+
T Consensus 38 n~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~ 92 (151)
T PF11559_consen 38 NCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASA 92 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444455555555555555555555555555555555554433
No 252
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.029 Score=61.07 Aligned_cols=15 Identities=27% Similarity=0.293 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 010679 109 RNLTEKIAKMEAELK 123 (504)
Q Consensus 109 ~eL~eki~kLEaEL~ 123 (504)
..|...+.++..+|+
T Consensus 369 ssLas~glk~ds~Lk 383 (654)
T KOG4809|consen 369 SSLASAGLKRDSKLK 383 (654)
T ss_pred HHHHHHhhhhhhhhh
Confidence 334444444444444
No 253
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=97.35 E-value=0.016 Score=65.40 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 010679 77 GTLRQELAAAQHELQILHGQIG 98 (504)
Q Consensus 77 ~~LkqELa~lqqEL~~L~~~L~ 98 (504)
..|+.|.+.++++|+.|+.+|.
T Consensus 390 QplrsENaqLrRrLrilnqqlr 411 (861)
T PF15254_consen 390 QPLRSENAQLRRRLRILNQQLR 411 (861)
T ss_pred hhhhhhhHHHHHHHHHHHHHHH
Confidence 3444444455555555544443
No 254
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=97.35 E-value=0.019 Score=60.60 Aligned_cols=13 Identities=0% Similarity=-0.066 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 010679 49 EVMEQKIASQHVE 61 (504)
Q Consensus 49 ~~LEqeLe~~~eE 61 (504)
..++.+++...-+
T Consensus 194 ~eWklEvERV~Pq 206 (359)
T PF10498_consen 194 AEWKLEVERVLPQ 206 (359)
T ss_pred HHHHHHHHHHhhh
Confidence 4444444444333
No 255
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.35 E-value=0.21 Score=50.06 Aligned_cols=143 Identities=10% Similarity=0.146 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHH-H
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQ---ELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK-T 124 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~Lkq---ELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~-e 124 (504)
..+.+.+..+.+.|..++.=.+|+......+.. ++...-..+..++..|..-+.....-+..+...+..+...+. .
T Consensus 54 ~e~~ey~d~l~~~l~~ieki~~Rv~kr~~~l~~d~~e~~~~f~~ws~lE~~l~~~L~~~a~~~~~~s~~l~~l~~~~~~~ 133 (240)
T cd07667 54 AAIGDYLDTFALKLGTIDRIAQRIIKEEIEYLVELREYGPVYSTWSGLEGELAEPLEGVSACIGNCSTALEELTEDMTED 133 (240)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 455556666666666555555555555544444 333333444444444433222222222222222222222221 1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHH
Q 010679 125 AEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYE 194 (504)
Q Consensus 125 le~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~ 194 (504)
......++..--.-+..+...+.+.+.+.++|.+.+.. +.+++..|..+|++++.+.+...+++..+
T Consensus 134 yl~~Lke~~~Y~~slk~vlK~RdqkQ~d~E~l~E~l~~---rre~~~kLe~~ie~~~~~ve~f~~~~~~E 200 (240)
T cd07667 134 FLPVLREYILYSESMKNVLKKRDQVQAEYEAKLEAVAL---RKEERPKVPTDVEKCQDRVECFNADLKAD 200 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112222222223333444444555555555555421 22334455556666666665555444433
No 256
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=97.33 E-value=0.0038 Score=64.78 Aligned_cols=51 Identities=16% Similarity=0.249 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccccccCCCCCC
Q 010679 191 YEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN-VDRRAADGSYGG 243 (504)
Q Consensus 191 Le~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~-~~~~~~~~~yg~ 243 (504)
....+..+.++.++++.++.++..+..++++|++- .-+.. =+.|. ++.+|.
T Consensus 101 ~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~kt-Nv~n~~F~I~h-dG~fGT 152 (314)
T PF04111_consen 101 YNELQLELIEFQEERDSLKNQYEYASNQLDRLRKT-NVYNDTFHIWH-DGPFGT 152 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT---TTTTT--EEE-ETTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchhceeeEee-cCCeee
Confidence 33334445555556666666666777777776653 22222 23444 445554
No 257
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=97.33 E-value=0.091 Score=59.00 Aligned_cols=34 Identities=24% Similarity=0.221 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDL 160 (504)
Q Consensus 127 ~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~EL 160 (504)
.|...++.|+.+-..|.....-|...++.|+.-|
T Consensus 246 ~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL 279 (739)
T PF07111_consen 246 ELLETVQHLQEDRDALQATAELLQVRVQSLTDIL 279 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555444
No 258
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.0094 Score=65.67 Aligned_cols=28 Identities=11% Similarity=0.065 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 010679 177 LESLRQEYHHCRGTYEYEKKFYNDHLES 204 (504)
Q Consensus 177 IeaLrqELq~LR~eLe~~kk~~~el~eq 204 (504)
+..+..++..|+.+|+..++..++|+..
T Consensus 476 i~~~~~~I~~L~~~L~e~~~~ve~L~~~ 503 (652)
T COG2433 476 IRARDRRIERLEKELEEKKKRVEELERK 503 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444333333
No 259
>PF15294 Leu_zip: Leucine zipper
Probab=97.32 E-value=0.0058 Score=61.99 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010679 55 IASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI 97 (504)
Q Consensus 55 Le~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L 97 (504)
...+..||.+|..+|++|...+..++..-...-++...++.+|
T Consensus 127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L 169 (278)
T PF15294_consen 127 SELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQL 169 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677766676666666666555444444444444443
No 260
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=97.32 E-value=0.14 Score=47.64 Aligned_cols=19 Identities=11% Similarity=0.265 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010679 51 MEQKIASQHVEMQKLATEN 69 (504)
Q Consensus 51 LEqeLe~~~eEIq~Le~e~ 69 (504)
|++.+..+...+..+...+
T Consensus 3 l~~~~~~l~~~~~~l~~~l 21 (202)
T PF01442_consen 3 LDDRLDSLSSRTEELEERL 21 (202)
T ss_dssp HHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555554433
No 261
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=97.30 E-value=0.089 Score=56.26 Aligned_cols=51 Identities=25% Similarity=0.393 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---------hhhhHHHHHHHHHHHHHHHHHhhHHHH
Q 010679 144 VAREELIAKVHQLTQDLQRAHTDV---------QQIPALLSELESLRQEYHHCRGTYEYE 194 (504)
Q Consensus 144 aerqeL~aqvq~L~~ELq~l~~el---------qql~~L~~EIeaLrqELq~LR~eLe~~ 194 (504)
.+.+.|..+++.|+.-+..++.+. .++..+..+|+.++.+|+.++.-|+.+
T Consensus 217 ~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~e 276 (426)
T smart00806 217 EDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIE 276 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455555666655555555543 346667777777777777777665554
No 262
>PF14992 TMCO5: TMCO5 family
Probab=97.30 E-value=0.0085 Score=60.76 Aligned_cols=60 Identities=23% Similarity=0.294 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc------chHHHHHHHHHHHHHHHHHHHHH
Q 010679 63 QKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG------MKSERELQMRNLTEKIAKMEAEL 122 (504)
Q Consensus 63 q~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~------l~ae~E~eL~eL~eki~kLEaEL 122 (504)
|+|...|+.+-..|.+.+..+..+..|+..+...+.. +..+.+..+++|..+.++||.+-
T Consensus 14 Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~~~~e~~l~~le~e~~~LE~~n 79 (280)
T PF14992_consen 14 QRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRSEEEDIISEERETDLQELELETAKLEKEN 79 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHhhhhhchHHHHHHHHhhhHHHhhhh
Confidence 3444444444444444444444444444444333222 12234444555555555555443
No 263
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=97.29 E-value=0.063 Score=52.56 Aligned_cols=34 Identities=9% Similarity=0.241 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010679 135 SKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ 168 (504)
Q Consensus 135 Lr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elq 168 (504)
.-..+..+...|..+..+.+.+..+|++.+.++.
T Consensus 119 ~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~ 152 (236)
T PF09325_consen 119 YIESVKEALNRRDKKLIEYQNAEKELQKKKAQLE 152 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334445555555555666666666655554443
No 264
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=97.29 E-value=0.12 Score=50.75 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010679 141 NLVVAREELIAKVHQLTQDL 160 (504)
Q Consensus 141 eL~aerqeL~aqvq~L~~EL 160 (504)
.+...+.+|..++..|+.+|
T Consensus 110 ~~~~~v~~l~~~l~~L~~ki 129 (219)
T TIGR02977 110 AVEETLAKLQEDIAKLQAKL 129 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 265
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.016 Score=63.81 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010679 204 SLQVMEKNYITMATEVEKLRAELMNA 229 (504)
Q Consensus 204 qlqemek~L~sme~EiekLraELekl 229 (504)
.+..++++|.....+++.|+++|+.+
T Consensus 482 ~I~~L~~~L~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 482 RIERLEKELEEKKKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444333
No 266
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=97.28 E-value=0.11 Score=48.77 Aligned_cols=9 Identities=44% Similarity=0.564 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 010679 141 NLVVAREEL 149 (504)
Q Consensus 141 eL~aerqeL 149 (504)
.|+..+.+|
T Consensus 102 qLr~rRD~L 110 (159)
T PF05384_consen 102 QLRERRDEL 110 (159)
T ss_pred HHHHHHHHH
Confidence 333333333
No 267
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=97.28 E-value=0.17 Score=49.60 Aligned_cols=29 Identities=14% Similarity=0.158 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 196 KFYNDHLESLQVMEKNYITMATEVEKLRA 224 (504)
Q Consensus 196 k~~~el~eqlqemek~L~sme~EiekLra 224 (504)
+.+..+.++.+.++.....|+.....|..
T Consensus 170 k~L~~l~~e~~~L~~~~~~Le~qk~~L~~ 198 (206)
T PF14988_consen 170 KELLQLIQEAQKLEARKSQLEKQKQQLQQ 198 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444333333333333333
No 268
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=97.27 E-value=0.25 Score=49.46 Aligned_cols=45 Identities=11% Similarity=0.166 Sum_probs=27.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679 187 CRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 231 (504)
Q Consensus 187 LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~ 231 (504)
+...|+..+..+..|+.++..........-+.|+++..+|..-+.
T Consensus 182 ~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~ISeeIH~~R~ 226 (239)
T PF05276_consen 182 FNQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQISEEIHEQRR 226 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555666666666666666666666666777777665443
No 269
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.27 E-value=6.3e-05 Score=87.48 Aligned_cols=59 Identities=22% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679 173 LLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 231 (504)
Q Consensus 173 L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~ 231 (504)
+...|..++..|.++...++.......++..++..+++.+..|..+++.++..++.+..
T Consensus 572 ~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r 630 (859)
T PF01576_consen 572 AQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAER 630 (859)
T ss_dssp -----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666667777777777777777777777777777776654
No 270
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=97.27 E-value=0.12 Score=50.77 Aligned_cols=64 Identities=19% Similarity=0.304 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----------hHHHHHHHHHHHHHHHHHhhHHHH
Q 010679 131 EFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI-----------PALLSELESLRQEYHHCRGTYEYE 194 (504)
Q Consensus 131 ELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql-----------~~L~~EIeaLrqELq~LR~eLe~~ 194 (504)
+...+-.-+..+..+|..+....+.+..+|.+++..+.++ ..+..+|..++...+.++.+++..
T Consensus 95 ey~r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~i 169 (216)
T cd07627 95 EYIRSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEV 169 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555556666666666666666555444433 344444444444444444444433
No 271
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=97.26 E-value=0.06 Score=50.23 Aligned_cols=33 Identities=15% Similarity=0.224 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 010679 170 IPALLSELESLRQEYHHCRGTYEYEKKFYNDHL 202 (504)
Q Consensus 170 l~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~ 202 (504)
+..+..+++.++.++......++.+......+.
T Consensus 141 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 173 (213)
T cd00176 141 VEELLKKHKELEEELEAHEPRLKSLNELAEELL 173 (213)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 344444455555555544444444444444333
No 272
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.25 E-value=0.1 Score=55.52 Aligned_cols=36 Identities=22% Similarity=0.160 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR 162 (504)
Q Consensus 127 ~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~ 162 (504)
.|+.-+++++.-+++.+..+.+|+.+...|...+..
T Consensus 245 KL~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~ 280 (446)
T KOG4438|consen 245 KLKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTN 280 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Confidence 344444444445555555555555555555544443
No 273
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=97.24 E-value=0.047 Score=56.59 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHhhHHHHHH
Q 010679 177 LESLRQEYHHCRGTYEYEKK 196 (504)
Q Consensus 177 IeaLrqELq~LR~eLe~~kk 196 (504)
|+++..|.+.||.+++.+.+
T Consensus 247 i~EfdiEre~LRAel~ree~ 266 (561)
T KOG1103|consen 247 IEEFDIEREFLRAELEREEK 266 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444333
No 274
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=97.24 E-value=0.24 Score=48.62 Aligned_cols=13 Identities=8% Similarity=0.033 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 010679 134 KSKTEAQNLVVAR 146 (504)
Q Consensus 134 qLr~ELqeL~aer 146 (504)
.+..+|.+++.++
T Consensus 119 ~~~~~L~k~~~~~ 131 (216)
T cd07627 119 SAESELSKKKAQL 131 (216)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 275
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=97.24 E-value=0.18 Score=53.04 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 200 DHLESLQVMEKNYITMATEVEKLRAELM 227 (504)
Q Consensus 200 el~eqlqemek~L~sme~EiekLraELe 227 (504)
.+.++...++++|+..++|+++++.+|+
T Consensus 353 aLrkerd~L~keLeekkreleql~~q~~ 380 (442)
T PF06637_consen 353 ALRKERDSLAKELEEKKRELEQLKMQLA 380 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555543
No 276
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=97.23 E-value=0.0079 Score=63.59 Aligned_cols=53 Identities=11% Similarity=0.218 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 109 RNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQ 161 (504)
Q Consensus 109 ~eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq 161 (504)
+..++.+.+|-.+|..++.++.+++.++..|.+.+.+-.....+...|+..+.
T Consensus 238 k~akehv~km~kdle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ 290 (575)
T KOG4403|consen 238 KKAKEHVNKMMKDLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLD 290 (575)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHh
Confidence 33455566666666666666677777777766666665555555555554443
No 277
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.22 E-value=0.29 Score=49.19 Aligned_cols=90 Identities=13% Similarity=0.178 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHH
Q 010679 131 EFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLE-SLQVME 209 (504)
Q Consensus 131 ELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~e-qlqeme 209 (504)
|...+-.-+..+..+|.+++.+++.+.+.+.+.+.+.. .+..+|+.++.+++.+.+.++. .++..++ +.+++.
T Consensus 143 eyv~y~~slK~vlk~R~~~Q~~le~k~e~l~k~~~dr~---~~~~ev~~~e~kve~a~~~~k~---e~~Rf~~~k~~D~k 216 (243)
T cd07666 143 EYVLYSETLMGVIKRRDQIQAELDSKVEALANKKADRD---LLKEEIEKLEDKVECANNALKA---DWERWKQNMQTDLR 216 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH---HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 33333444445555555666666666655555444432 3444555555555555444332 2222222 234455
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010679 210 KNYITMATEVEKLRAEL 226 (504)
Q Consensus 210 k~L~sme~EiekLraEL 226 (504)
..+..+.....++..++
T Consensus 217 ~~~~~yae~~i~~~~~~ 233 (243)
T cd07666 217 SAFTDMAENNISYYEEC 233 (243)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555444444444444
No 278
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=97.20 E-value=0.077 Score=56.78 Aligned_cols=181 Identities=17% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH---------------------HHHH------HHHHHHHHHHHHHHHHHHHHhhhccchHHHHH
Q 010679 54 KIASQHVEMQKLATENQ---------------------RLAA------THGTLRQELAAAQHELQILHGQIGGMKSEREL 106 (504)
Q Consensus 54 eLe~~~eEIq~Le~e~q---------------------rLe~------qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~ 106 (504)
+-+++.+||+.|..+++ .+.. .......+|+.-+.+-...+..-..+..++..
T Consensus 223 EkE~Ll~EIq~Lk~qL~~~~~ss~s~~~~~~sll~~s~~~~~~~~~~~~~~~~~~~le~er~~wtE~ES~WIsLteeLR~ 302 (488)
T PF06548_consen 223 EKEVLLEEIQDLKSQLQYYTDSSMSTDRLRSSLLQRSYQLRPSAIPESGDENAEEELEQERQRWTEAESKWISLTEELRV 302 (488)
T ss_pred hHHHHHHHHHHHHHHHHhccccccccccccccHHhhhhccCCCCCcccCCCchhhhHHHHHHHHHHHHhhhhhhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------
Q 010679 107 QMRNLTEKIAKMEAELKTAEPVKLEFQ-----------KSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQ------ 169 (504)
Q Consensus 107 eL~eL~eki~kLEaEL~ele~LkaELe-----------qLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqq------ 169 (504)
+|..-.....+++.||..-+....||+ .+-....+|+..-.+|......+..-|...+....+
T Consensus 303 dle~~r~~aek~~~EL~~Ek~c~eEL~~al~~A~~GhaR~lEqYadLqEk~~~Ll~~Hr~i~egI~dVKkaAakAg~kG~ 382 (488)
T PF06548_consen 303 DLESSRSLAEKLEMELDSEKKCTEELDDALQRAMEGHARMLEQYADLQEKHNDLLARHRRIMEGIEDVKKAAAKAGVKGA 382 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q ss_pred ----hhHHHHHHHHHHHHHHHHHhhHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 170 ----IPALLSELESLRQEYHHCRGTYEYEKKFYN---------------------DHLESLQVMEKNYITMATEVEKLRA 224 (504)
Q Consensus 170 ----l~~L~~EIeaLrqELq~LR~eLe~~kk~~~---------------------el~eqlqemek~L~sme~EiekLra 224 (504)
+..|-+||.+|+.|.++-|.-+..+++.+. +.++.....+++...+++|-+++..
T Consensus 383 ~~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~ek~~k 462 (488)
T PF06548_consen 383 ESRFINSLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAMDAEQENEKAKK 462 (488)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhcccccc
Q 010679 225 ELMNAPNVDR 234 (504)
Q Consensus 225 ELekle~~~~ 234 (504)
++++|++.|+
T Consensus 463 qiekLK~kh~ 472 (488)
T PF06548_consen 463 QIEKLKRKHK 472 (488)
T ss_pred HHHHHHHHHH
No 279
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=97.19 E-value=0.017 Score=66.32 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 72 LAATHGTLRQELAAAQHELQILHG 95 (504)
Q Consensus 72 Le~qi~~LkqELa~lqqEL~~L~~ 95 (504)
|.+++..++++|+.++.+|...+.
T Consensus 272 L~~qL~~l~~~L~~aE~~l~~fr~ 295 (726)
T PRK09841 272 LQRQLPEVRSELDQAEEKLNVYRQ 295 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 280
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=97.18 E-value=0.022 Score=59.91 Aligned_cols=24 Identities=8% Similarity=0.119 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 200 DHLESLQVMEKNYITMATEVEKLR 223 (504)
Q Consensus 200 el~eqlqemek~L~sme~EiekLr 223 (504)
+|+.+++..++.++.+...+++++
T Consensus 282 ~L~re~~~a~~~y~~~l~r~~~a~ 305 (362)
T TIGR01010 282 RLVLQNELAQQQLKAALTSLQQTR 305 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444
No 281
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=97.16 E-value=0.13 Score=53.96 Aligned_cols=58 Identities=12% Similarity=0.127 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccccc
Q 010679 179 SLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN-VDRRA 236 (504)
Q Consensus 179 aLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~-~~~~~ 236 (504)
.++.++..++..++.+++.+++...+.+.++.+++.++..++....-+..|.. ..+|.
T Consensus 239 ~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~ 297 (344)
T PF12777_consen 239 EKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWS 297 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHH
Confidence 33333333333333333333333333333444444444444444444444433 44554
No 282
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=97.16 E-value=0.061 Score=51.25 Aligned_cols=14 Identities=36% Similarity=0.551 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHhc
Q 010679 216 ATEVEKLRAELMNA 229 (504)
Q Consensus 216 e~EiekLraELekl 229 (504)
..+|..|+.+++.+
T Consensus 137 ~~ei~~lr~~iE~~ 150 (177)
T PF07798_consen 137 DTEIANLRTEIESL 150 (177)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555555553
No 283
>KOG3958 consensus Putative dynamitin [Cytoskeleton]
Probab=97.14 E-value=0.26 Score=50.34 Aligned_cols=48 Identities=13% Similarity=0.137 Sum_probs=26.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcc
Q 010679 183 EYHHCRGTYEYEKKFYNDHLESLQV-MEKNYITMATEVEKLRAELMNAP 230 (504)
Q Consensus 183 ELq~LR~eLe~~kk~~~el~eqlqe-mek~L~sme~EiekLraELekle 230 (504)
+|+..+..|...-+...++.-+++. |.++|.+.+..+.++++.++++.
T Consensus 322 hl~t~q~~i~~sl~~n~ell~~vqtt~~qnl~tV~~k~a~ie~rva~l~ 370 (371)
T KOG3958|consen 322 HLDTTQQMIANSLKDNTELLTQVQTTMRQNLATVEGKFASIEERVAKLG 370 (371)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444444444444445444 56667777777777777766653
No 284
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=97.14 E-value=0.3 Score=52.10 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 55 IASQHVEMQKLATENQRLAATHGT 78 (504)
Q Consensus 55 Le~~~eEIq~Le~e~qrLe~qi~~ 78 (504)
+.....||..|.....+|+..+..
T Consensus 66 l~~~~~Ei~~L~~~K~~le~aL~~ 89 (384)
T PF03148_consen 66 LEELDEEIDLLEEEKRRLEKALEA 89 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 285
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=97.11 E-value=0.11 Score=56.59 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHH
Q 010679 86 AQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK 123 (504)
Q Consensus 86 lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ 123 (504)
+...|..|...+..+...++.+.+.|..+|..+..++.
T Consensus 356 l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~~e~~ 393 (531)
T PF15450_consen 356 LMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAKNEWE 393 (531)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444455555566666665555444
No 286
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=97.11 E-value=0.15 Score=55.58 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHhhHHH
Q 010679 175 SELESLRQEYHHCRGTYEY 193 (504)
Q Consensus 175 ~EIeaLrqELq~LR~eLe~ 193 (504)
.+|.++++||..+-..++.
T Consensus 455 ~eV~~vRqELa~lLssvQ~ 473 (531)
T PF15450_consen 455 REVGAVRQELATLLSSVQL 473 (531)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555444433333
No 287
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=97.11 E-value=0.1 Score=58.74 Aligned_cols=52 Identities=8% Similarity=0.117 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 177 IeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELek 228 (504)
.++|.+.|..-|+...++.+.+.-.+.+++.+.+.+.++++....++..|-+
T Consensus 1061 RDELh~~Lst~RsRr~~~EkqlT~~E~E~~~L~~~~rK~ErDY~~~Re~VV~ 1112 (1480)
T COG3096 1061 RDELHAQLSTNRSRRNQLEKQLTFCEAEMDNLTRKLRKLERDYFEMREQVVT 1112 (1480)
T ss_pred HHHHHHHHhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3444444444444444444555555555555555555555555555555443
No 288
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=97.08 E-value=0.19 Score=56.85 Aligned_cols=72 Identities=13% Similarity=0.193 Sum_probs=31.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--h--HHHHHHHHHHHHHHHHHHH
Q 010679 46 PPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGM--K--SERELQMRNLTEKIAKMEA 120 (504)
Q Consensus 46 p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l--~--ae~E~eL~eL~eki~kLEa 120 (504)
|.|+..-.+|...+.+| +..+...+.+-..++.+|..+++.+..|++-|-++ . ..+...+.++.++++..++
T Consensus 832 ~dPE~~~~~~~~~Rnei---~R~l~~~~~~~QQ~R~Q~d~aKe~~~~LnkLiPql~ll~dE~L~dRveE~~E~L~~a~e 907 (1480)
T COG3096 832 ADPEAEIRQLNSRRNEL---ERALSNHENDNQQQRIQFDQAKEGVTALNRLIPQLNLLADESLADRVEEIRERLDEAQE 907 (1480)
T ss_pred CCHHHHHHHHHHHHHHH---HHHHHhhhchHHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHH
Confidence 45544333343333333 33333444444445555555555555555444331 1 1233445555555554443
No 289
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=97.08 E-value=0.49 Score=50.54 Aligned_cols=31 Identities=6% Similarity=-0.031 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATHGTL 79 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~L 79 (504)
..|-.+++.+..=...|...++++.+++..|
T Consensus 119 ~eL~kE~~li~~~~~lL~~~l~~~~eQl~~l 149 (384)
T PF03148_consen 119 KELLKEVELIENIKRLLQRTLEQAEEQLRLL 149 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455544443333444444444444433
No 290
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=97.07 E-value=0.025 Score=56.81 Aligned_cols=18 Identities=17% Similarity=0.422 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHhccc
Q 010679 214 TMATEVEKLRAELMNAPN 231 (504)
Q Consensus 214 sme~EiekLraELekle~ 231 (504)
.+...|..|+.+|+.++.
T Consensus 186 ~lq~QL~~L~~EL~~~kd 203 (246)
T PF00769_consen 186 RLQEQLKELKSELEQLKD 203 (246)
T ss_dssp HHHHHHHHHHHHHHTTB-
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 344455555555555553
No 291
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.07 E-value=0.027 Score=60.16 Aligned_cols=8 Identities=38% Similarity=0.318 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 010679 200 DHLESLQV 207 (504)
Q Consensus 200 el~eqlqe 207 (504)
+|++|+++
T Consensus 439 dLqEQlrD 446 (493)
T KOG0804|consen 439 DLQEQLRD 446 (493)
T ss_pred HHHHHHHh
Confidence 33333333
No 292
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=97.06 E-value=0.094 Score=55.07 Aligned_cols=55 Identities=18% Similarity=0.254 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010679 175 SELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 229 (504)
Q Consensus 175 ~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekl 229 (504)
.+++.++.+++.++..|+..+..+.++.+++..+.++++...++..+|+.+++.+
T Consensus 221 ~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~ 275 (344)
T PF12777_consen 221 QKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEET 275 (344)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444544455555555555555555555555555555554443
No 293
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=97.05 E-value=0.017 Score=58.26 Aligned_cols=48 Identities=15% Similarity=0.128 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRA 224 (504)
Q Consensus 177 IeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLra 224 (504)
|+++++||++|++-++..+..+.+..+-+|..-..++.-.+.++.|-.
T Consensus 119 LKEARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN~KLEsLLq 166 (305)
T PF15290_consen 119 LKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKLESLLQ 166 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHHHHHHH
Confidence 555666666666666666666666655565555444444444444433
No 294
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=97.05 E-value=0.042 Score=62.54 Aligned_cols=52 Identities=19% Similarity=0.197 Sum_probs=25.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhccc
Q 010679 180 LRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMA---TEVEKLRAELMNAPN 231 (504)
Q Consensus 180 LrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme---~EiekLraELekle~ 231 (504)
++.++..+..+++...+....+..++.+.+.++.... .+..+|..+|..|+.
T Consensus 260 l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkG 314 (670)
T KOG0239|consen 260 LNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKG 314 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3333333334444444444444444444444444444 555566666666664
No 295
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=97.05 E-value=0.036 Score=56.13 Aligned_cols=58 Identities=12% Similarity=0.168 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcc
Q 010679 173 LLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYIT-------MATEVEKLRAELMNAP 230 (504)
Q Consensus 173 L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~s-------me~EiekLraELekle 230 (504)
|...|+..+.||++.+..|+.+++-.-..+++...+|.+|+. .-+.+.=|+.+|+...
T Consensus 195 Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe~qle~~~ 259 (267)
T PF10234_consen 195 LEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYLEHQLEEYN 259 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344566666666666666666654444444444444443333 3455555555555543
No 296
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.04 E-value=0.35 Score=46.94 Aligned_cols=134 Identities=13% Similarity=0.202 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHH---
Q 010679 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKT--- 124 (504)
Q Consensus 48 ~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~e--- 124 (504)
-..+.+.|..+...|..++.-+++|.....+|-..+..+-..+..+... ..++..-|..+-..++++...+..
T Consensus 16 F~e~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~~ls~~----E~~L~~~L~~~~~~~~~~~~~~~~l~~ 91 (200)
T cd07624 16 FDKMNEYLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQLWSAS----ETELAPLLEGVSSAVERCTAALEVLLS 91 (200)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777777777777777777777776666666555544433333211 111222222222222222222211
Q ss_pred -----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhH
Q 010679 125 -----AEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTY 191 (504)
Q Consensus 125 -----le~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eL 191 (504)
+..-..|....-.-+..+...|.....+.+.+.+.|.+.+.+ +..+++.++.+++.+..++
T Consensus 92 ~~~~~f~e~Lkey~~y~~svk~~l~~R~~~q~~~e~~~e~L~~k~~~------l~~ev~~a~~~~e~~~~~~ 157 (200)
T cd07624 92 DHEFVFLPPLREYLLYSDAVKDVLKRRDQFQIEYELSVEELNKKRLE------LLKEVEKLQDKLECANADL 157 (200)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 112223333344444444455555555555555555544433 4455555555555555444
No 297
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=97.04 E-value=0.12 Score=53.38 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHhccc
Q 010679 215 MATEVEKLRAELMNAPN 231 (504)
Q Consensus 215 me~EiekLraELekle~ 231 (504)
|..|++++.-.+++.+.
T Consensus 246 l~selkkivf~~enie~ 262 (401)
T PF06785_consen 246 LVSELKKIVFKVENIEA 262 (401)
T ss_pred HHHHHHHHHHHHhhHHH
Confidence 44455555555555443
No 298
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=97.03 E-value=0.1 Score=49.03 Aligned_cols=20 Identities=5% Similarity=0.204 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 010679 211 NYITMATEVEKLRAELMNAP 230 (504)
Q Consensus 211 ~L~sme~EiekLraELekle 230 (504)
.|.-+...+..+...|+.+.
T Consensus 134 vl~yL~~dl~~v~~~~e~~~ 153 (159)
T PF05384_consen 134 VLNYLSGDLQQVSEQIEDAQ 153 (159)
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 33344555555555555443
No 299
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=97.02 E-value=0.056 Score=57.99 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 204 SLQVMEKNYITMATEVEKLRAELM 227 (504)
Q Consensus 204 qlqemek~L~sme~EiekLraELe 227 (504)
++..++.++...+.++.+++.+++
T Consensus 228 ~~~~~~~~l~~~~~~l~~~~~~l~ 251 (421)
T TIGR03794 228 ELETVEARIKEARYEIEELENKLN 251 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566666677777777777775
No 300
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=97.02 E-value=0.079 Score=56.61 Aligned_cols=22 Identities=5% Similarity=0.018 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010679 139 AQNLVVAREELIAKVHQLTQDL 160 (504)
Q Consensus 139 LqeL~aerqeL~aqvq~L~~EL 160 (504)
++.++.++..|..+++.++.++
T Consensus 325 ~~~~q~q~~~Lrs~~~d~EAq~ 346 (554)
T KOG4677|consen 325 SAHIQDQYTLLRSQIIDIEAQD 346 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333
No 301
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=97.01 E-value=0.028 Score=55.43 Aligned_cols=32 Identities=13% Similarity=0.208 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 197 FYNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 197 ~~~el~eqlqemek~L~sme~EiekLraELek 228 (504)
...++..+.-+++.....|+.||.+++++..+
T Consensus 183 ~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~ 214 (221)
T PF05700_consen 183 RWKELVSKNLEIEVACEELEQEIEQLKRKAAE 214 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444555555544444
No 302
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=97.01 E-value=0.043 Score=57.99 Aligned_cols=17 Identities=18% Similarity=0.427 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHhc
Q 010679 213 ITMATEVEKLRAELMNA 229 (504)
Q Consensus 213 ~sme~EiekLraELekl 229 (504)
..+.+.|.+|+.|+..+
T Consensus 331 v~IKqAl~kLk~EI~qM 347 (359)
T PF10498_consen 331 VKIKQALTKLKQEIKQM 347 (359)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34555555666665554
No 303
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=97.01 E-value=0.051 Score=50.20 Aligned_cols=7 Identities=14% Similarity=0.273 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 010679 76 HGTLRQE 82 (504)
Q Consensus 76 i~~LkqE 82 (504)
.+.|..+
T Consensus 54 ~e~l~~~ 60 (151)
T PF11559_consen 54 REDLSDK 60 (151)
T ss_pred HHHHHHH
Confidence 3333333
No 304
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=97.01 E-value=0.076 Score=54.85 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010679 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG 99 (504)
Q Consensus 48 ~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~ 99 (504)
...|..+|....++.++....+.+|..+...|.-++..+++.|..++..+.+
T Consensus 79 ~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~ 130 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQ 130 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666555555555555555555555555555555554443
No 305
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=0.28 Score=51.97 Aligned_cols=31 Identities=26% Similarity=0.259 Sum_probs=14.3
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Q 010679 86 AQHELQILHGQIGGMKSERELQMRNLTEKIA 116 (504)
Q Consensus 86 lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~ 116 (504)
....+..+...|..++.+.+.++..|.....
T Consensus 343 sE~ll~tlq~~iSqaq~~vq~qma~lv~a~e 373 (542)
T KOG0993|consen 343 SEDLLVTLQAEISQAQSEVQKQMARLVVASE 373 (542)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555544444444444444333
No 306
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.01 E-value=0.079 Score=59.73 Aligned_cols=57 Identities=18% Similarity=0.329 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 104 RELQMRNLTEKIAKMEAELKTA-----------EPV-KLEFQKSKTEAQNLVVAREELIAKVHQLTQDL 160 (504)
Q Consensus 104 ~E~eL~eL~eki~kLEaEL~el-----------e~L-kaELeqLr~ELqeL~aerqeL~aqvq~L~~EL 160 (504)
...++.++..+|+++-.+|..- ..+ ..++++++.+|.+|+.++..=..++..+..+|
T Consensus 122 R~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I 190 (660)
T KOG4302|consen 122 RRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEI 190 (660)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666421 011 13455555555555554444333444444333
No 307
>PRK11519 tyrosine kinase; Provisional
Probab=97.00 E-value=0.045 Score=62.88 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHH
Q 010679 155 QLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYE 194 (504)
Q Consensus 155 ~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~ 194 (504)
.|+.++..++.+...++..+.++..|+.+.+-.++-++.+
T Consensus 350 ~L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~~~~~lY~~l 389 (719)
T PRK11519 350 ALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQL 389 (719)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333344444444444444433333
No 308
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=97.00 E-value=0.12 Score=51.21 Aligned_cols=51 Identities=12% Similarity=0.118 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG 99 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~ 99 (504)
..||+-|..-..||..-+.--.....++.++.+.|-.....|..|..++.+
T Consensus 74 ~~LeeliNkWs~el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~ 124 (254)
T KOG2196|consen 74 KTLEELINKWSLELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVK 124 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHH
Confidence 556777776666666555555555666666666666555555555554433
No 309
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=96.99 E-value=0.051 Score=54.56 Aligned_cols=20 Identities=15% Similarity=0.302 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 010679 209 EKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 209 ek~L~sme~EiekLraELek 228 (504)
...+..+...+.+...+|..
T Consensus 109 q~el~~ar~~~~~ak~~L~~ 128 (246)
T PF00769_consen 109 QEELEEAREDEEEAKEELLE 128 (246)
T ss_dssp HHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444433
No 310
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.99 E-value=0.22 Score=47.56 Aligned_cols=56 Identities=20% Similarity=0.341 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------hhhHHHHHHHHHHHHHHHHHhhHHHH
Q 010679 139 AQNLVVAREELIAKVHQLTQDLQRAHTDVQ-----------QIPALLSELESLRQEYHHCRGTYEYE 194 (504)
Q Consensus 139 LqeL~aerqeL~aqvq~L~~ELq~l~~elq-----------ql~~L~~EIeaLrqELq~LR~eLe~~ 194 (504)
+.++...+..+..+++.+...+.+.+.++. ++..+..+|..++.+++.++..++..
T Consensus 105 ~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i 171 (218)
T cd07596 105 VKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEI 171 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555555544444333 33344444444444444444444443
No 311
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=96.98 E-value=0.3 Score=49.62 Aligned_cols=26 Identities=15% Similarity=0.057 Sum_probs=13.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhHHHH
Q 010679 169 QIPALLSELESLRQEYHHCRGTYEYE 194 (504)
Q Consensus 169 ql~~L~~EIeaLrqELq~LR~eLe~~ 194 (504)
+|..|++||..+..+....+.+|...
T Consensus 166 kl~~LeqELvraEae~lvaEAqL~n~ 191 (271)
T PF13805_consen 166 KLVVLEQELVRAEAENLVAEAQLSNI 191 (271)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 45555555555555554444444443
No 312
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=96.96 E-value=0.035 Score=63.09 Aligned_cols=48 Identities=15% Similarity=0.236 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 173 LLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVE 220 (504)
Q Consensus 173 L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~Eie 220 (504)
|+.++..|++++.+++.++..+.+.+++....+..+...|.+++.++.
T Consensus 246 l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~ 293 (670)
T KOG0239|consen 246 LQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLV 293 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444444443
No 313
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=96.95 E-value=0.14 Score=59.98 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 72 LAATHGTLRQELAAAQHELQILHG 95 (504)
Q Consensus 72 Le~qi~~LkqELa~lqqEL~~L~~ 95 (504)
...++++++.+|+.+..+|..+..
T Consensus 446 ~~~~ieele~el~~~~~~l~~~~e 469 (1041)
T KOG0243|consen 446 MAEQIEELEEELENLEKQLKDLTE 469 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 314
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=96.94 E-value=0.047 Score=56.41 Aligned_cols=58 Identities=19% Similarity=0.194 Sum_probs=44.2
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010679 42 FDMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG 99 (504)
Q Consensus 42 ~~~~p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~ 99 (504)
.+|......+|++.....-.-..|.++...|.-+++-|+.+|..+++.+..++.++.+
T Consensus 80 r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~e 137 (302)
T PF09738_consen 80 RDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYRE 137 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666777888888887777777777787888888888888887777777777777644
No 315
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=96.93 E-value=0.63 Score=48.01 Aligned_cols=46 Identities=11% Similarity=0.199 Sum_probs=26.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679 186 HCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 231 (504)
Q Consensus 186 ~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~ 231 (504)
.|..++......++++..-+....+-......|+++|...+.++++
T Consensus 219 qlK~ql~lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEK 264 (391)
T KOG1850|consen 219 QLKEQLALYMAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEK 264 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555666677777666666665
No 316
>PF15294 Leu_zip: Leucine zipper
Probab=96.91 E-value=0.033 Score=56.61 Aligned_cols=10 Identities=20% Similarity=0.322 Sum_probs=5.0
Q ss_pred HHHHHHHHHH
Q 010679 71 RLAATHGTLR 80 (504)
Q Consensus 71 rLe~qi~~Lk 80 (504)
+|..++.+|.
T Consensus 78 kl~~diselE 87 (278)
T PF15294_consen 78 KLQTDISELE 87 (278)
T ss_pred HhcccHHHHH
Confidence 4555555543
No 317
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=96.89 E-value=0.03 Score=55.69 Aligned_cols=19 Identities=5% Similarity=0.174 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHhhHHH
Q 010679 175 SELESLRQEYHHCRGTYEY 193 (504)
Q Consensus 175 ~EIeaLrqELq~LR~eLe~ 193 (504)
++|..|...+.+++.+.+.
T Consensus 60 ~DIn~lE~iIkqa~~er~~ 78 (230)
T PF10146_consen 60 QDINTLENIIKQAESERNK 78 (230)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 318
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=96.89 E-value=0.1 Score=56.04 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccc
Q 010679 210 KNYITMATEVEKLRAELMNAPN 231 (504)
Q Consensus 210 k~L~sme~EiekLraELekle~ 231 (504)
.++..++.++..++++++.++.
T Consensus 227 ~~~~~~~~~l~~~~~~l~~~~~ 248 (421)
T TIGR03794 227 KELETVEARIKEARYEIEELEN 248 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666554
No 319
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=0.3 Score=52.97 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHhccc
Q 010679 215 MATEVEKLRAELMNAPN 231 (504)
Q Consensus 215 me~EiekLraELekle~ 231 (504)
...-|..|..|++..+.
T Consensus 401 ~a~tikeL~~El~~yrr 417 (613)
T KOG0992|consen 401 HAETIKELEIELEEYRR 417 (613)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34556666666666443
No 320
>PRK10884 SH3 domain-containing protein; Provisional
Probab=96.88 E-value=0.013 Score=57.36 Aligned_cols=11 Identities=9% Similarity=-0.200 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 010679 136 KTEAQNLVVAR 146 (504)
Q Consensus 136 r~ELqeL~aer 146 (504)
+.+++.++.++
T Consensus 145 ~~~l~~~~~~~ 155 (206)
T PRK10884 145 KNQLIVAQKKV 155 (206)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 321
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=96.88 E-value=0.16 Score=51.57 Aligned_cols=65 Identities=22% Similarity=0.325 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHH
Q 010679 127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYE 194 (504)
Q Consensus 127 ~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~ 194 (504)
.+..++++.+..+..+..+...|..+++..+.||++.+++++.| +.--.+...|.++++.+|+.+
T Consensus 173 ~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sL---q~vRPAfmdEyEklE~EL~~l 237 (267)
T PF10234_consen 173 AVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSL---QSVRPAFMDEYEKLEEELQKL 237 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcChHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555555555555544333 333344555666666555433
No 322
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=96.86 E-value=0.68 Score=50.41 Aligned_cols=41 Identities=17% Similarity=0.134 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 010679 196 KFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRA 236 (504)
Q Consensus 196 k~~~el~eqlqemek~L~sme~EiekLraELekle~~~~~~ 236 (504)
+....+.+++..+...+..|.+++..|.+-|..-..+-.|.
T Consensus 157 ~~~~~~~~~i~~~lg~~~~la~e~~~Lt~~Lk~~ktrG~wG 197 (448)
T COG1322 157 EERSTLLEEIDRLLGEIQQLAQEAGNLTAALKGNKTRGNWG 197 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccHH
Confidence 44555666777777777888888888888888754466563
No 323
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=0.15 Score=49.08 Aligned_cols=18 Identities=11% Similarity=0.263 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010679 206 QVMEKNYITMATEVEKLR 223 (504)
Q Consensus 206 qemek~L~sme~EiekLr 223 (504)
.+++.+|..+..|..-+.
T Consensus 161 ~dL~aELdaL~~E~d~~~ 178 (218)
T KOG1655|consen 161 ADLDAELDALGQELDMLE 178 (218)
T ss_pred HHHHHHHHHHHhHhhccc
Confidence 445566666666655443
No 324
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=96.85 E-value=0.15 Score=53.40 Aligned_cols=52 Identities=19% Similarity=0.227 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010679 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG 99 (504)
Q Consensus 48 ~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~ 99 (504)
+..+..++...++.++.+..+.+++.++.....+||+..+.-++.+.+.++-
T Consensus 134 ~~~~~~~~~~~~q~lq~~~~~~er~~~~y~~~~qElq~k~t~~~afn~tiki 185 (464)
T KOG4637|consen 134 INAVGKKLREYHQQLQEKSLEYERLYEEYTRTSQELQMKRTAIEAFNETIKI 185 (464)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3555666666777777777777777777777777777666666666555544
No 325
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=96.84 E-value=0.08 Score=57.54 Aligned_cols=22 Identities=5% Similarity=0.280 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010679 50 VMEQKIASQHVEMQKLATENQR 71 (504)
Q Consensus 50 ~LEqeLe~~~eEIq~Le~e~qr 71 (504)
.+..+|..+..+++..+..++.
T Consensus 199 ~l~~~l~~lr~~~~~ae~~~~~ 220 (458)
T COG3206 199 SLDERLEELRARLQEAEAQVED 220 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555544443
No 326
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.84 E-value=0.13 Score=56.96 Aligned_cols=31 Identities=10% Similarity=0.074 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATHGTL 79 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~L 79 (504)
..++++|....++.+.+..+.+.|.-++++|
T Consensus 167 ~~~~~~l~~~~~~~~e~~~~~d~L~fq~~El 197 (557)
T COG0497 167 KQARRELEDLQEKERERAQRADLLQFQLEEL 197 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777776666666666666655544
No 327
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=96.84 E-value=0.086 Score=54.31 Aligned_cols=24 Identities=13% Similarity=0.079 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 010679 206 QVMEKNYITMATEVEKLRAELMNA 229 (504)
Q Consensus 206 qemek~L~sme~EiekLraELekl 229 (504)
...+.++..++.+++.++..++++
T Consensus 182 ~~~~~~~~~~~~~l~~a~~~l~~~ 205 (327)
T TIGR02971 182 DLAQAEVKSALEAVQQAEALLELT 205 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344455555566666666666554
No 328
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.83 E-value=0.48 Score=45.21 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010679 53 QKIASQHVEMQKLATENQRLAA 74 (504)
Q Consensus 53 qeLe~~~eEIq~Le~e~qrLe~ 74 (504)
+.|..+...+..+.....++..
T Consensus 11 ~~v~~le~~l~~l~~~~~~~~k 32 (218)
T cd07596 11 DYILKLEEQLKKLSKQAQRLVK 32 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 329
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.83 E-value=0.18 Score=50.87 Aligned_cols=18 Identities=6% Similarity=0.097 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 010679 48 PEVMEQKIASQHVEMQKL 65 (504)
Q Consensus 48 ~~~LEqeLe~~~eEIq~L 65 (504)
+..+..+.++++.++...
T Consensus 11 iae~k~e~sAlhqK~~aK 28 (389)
T KOG4687|consen 11 IAELKKEFSALHQKCGAK 28 (389)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 344555555555544433
No 330
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.83 E-value=0.082 Score=56.53 Aligned_cols=14 Identities=7% Similarity=0.114 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 010679 200 DHLESLQVMEKNYI 213 (504)
Q Consensus 200 el~eqlqemek~L~ 213 (504)
...+++++++++|.
T Consensus 432 s~d~~I~dLqEQlr 445 (493)
T KOG0804|consen 432 SKDEKITDLQEQLR 445 (493)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444443
No 331
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=96.82 E-value=0.59 Score=46.14 Aligned_cols=62 Identities=8% Similarity=0.095 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------hhhHHHHHHHHHHHHHHHHHhhHHHHH
Q 010679 134 KSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ---------QIPALLSELESLRQEYHHCRGTYEYEK 195 (504)
Q Consensus 134 qLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elq---------ql~~L~~EIeaLrqELq~LR~eLe~~k 195 (504)
.+-.-+..+-.+|..+-...+.+..+|.+.+..+. ++..+..+|.+++...+.++.+++...
T Consensus 106 r~i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~~~e~~~~~a~~~fe~is 176 (224)
T cd07623 106 GLIGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELSGRTDKLDQAQQEIKEWEAKVDRGQKEFEEIS 176 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444555555555555555554444322 244445555555555555555544443
No 332
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=96.81 E-value=0.041 Score=57.39 Aligned_cols=21 Identities=5% Similarity=0.006 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcc
Q 010679 210 KNYITMATEVEKLRAELMNAP 230 (504)
Q Consensus 210 k~L~sme~EiekLraELekle 230 (504)
.++..++.+++..+..|+.+.
T Consensus 190 a~~~~~~a~l~~a~~~l~~~~ 210 (346)
T PRK10476 190 AQRAAREAALAIAELHLEDTT 210 (346)
T ss_pred HHHHHHHHHHHHHHHHhhcCE
Confidence 334445555666666666544
No 333
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=96.81 E-value=0.77 Score=48.97 Aligned_cols=41 Identities=10% Similarity=0.038 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010679 189 GTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 229 (504)
Q Consensus 189 ~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekl 229 (504)
.++..++..+..|++++.+.+..+..+..-..+|+.+|+..
T Consensus 351 ~EV~~l~~t~~~L~~kL~eA~~~l~~L~~~~~rLe~di~~k 391 (421)
T KOG2685|consen 351 DEVHELDDTVAALKEKLDEAEDSLKLLVNHRARLERDIAIK 391 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555556666666666666666666666666553
No 334
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=96.81 E-value=0.13 Score=47.48 Aligned_cols=42 Identities=14% Similarity=0.242 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHH
Q 010679 82 ELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK 123 (504)
Q Consensus 82 ELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ 123 (504)
.++....+|..+..+|..+..-..+++..+..+|+....+|+
T Consensus 60 rveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLk 101 (159)
T PF04949_consen 60 RVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELK 101 (159)
T ss_pred HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhh
Confidence 333444444444444444333344455555555555555544
No 335
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=96.79 E-value=0.2 Score=58.41 Aligned_cols=17 Identities=29% Similarity=0.292 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010679 75 THGTLRQELAAAQHELQ 91 (504)
Q Consensus 75 qi~~LkqELa~lqqEL~ 91 (504)
.+..|++||..++.|..
T Consensus 1132 ~lnnlqqElklLRnEK~ 1148 (1439)
T PF12252_consen 1132 NLNNLQQELKLLRNEKI 1148 (1439)
T ss_pred HHHHHHHHHHHHHhHHH
Confidence 33333344433333333
No 336
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=96.79 E-value=0.089 Score=54.19 Aligned_cols=20 Identities=15% Similarity=0.069 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 010679 211 NYITMATEVEKLRAELMNAP 230 (504)
Q Consensus 211 ~L~sme~EiekLraELekle 230 (504)
++...+.+++.++++++.++
T Consensus 180 ~~~~~~~~~~~~~~~l~~a~ 199 (327)
T TIGR02971 180 DVDLAQAEVKSALEAVQQAE 199 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555543
No 337
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=96.79 E-value=0.17 Score=55.07 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010679 70 QRLAATHGTLRQELAAAQHELQI 92 (504)
Q Consensus 70 qrLe~qi~~LkqELa~lqqEL~~ 92 (504)
.-+..++.+++.++...+.+++.
T Consensus 198 ~~l~~~l~~lr~~~~~ae~~~~~ 220 (458)
T COG3206 198 DSLDERLEELRARLQEAEAQVED 220 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555444443333
No 338
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=96.78 E-value=0.41 Score=49.26 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Q 010679 208 MEKNYITMATEVEKLRAELMNAPN 231 (504)
Q Consensus 208 mek~L~sme~EiekLraELekle~ 231 (504)
+-..|+...+-+.-|++||....+
T Consensus 188 ~t~~le~qk~tv~~Leaev~~~K~ 211 (426)
T KOG2008|consen 188 YTVQLEQQKKTVDDLEAEVTLAKG 211 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334445555556666666655443
No 339
>PF14992 TMCO5: TMCO5 family
Probab=96.77 E-value=0.028 Score=57.13 Aligned_cols=36 Identities=25% Similarity=0.375 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010679 64 KLATENQRLAATHGTLRQELAAAQHELQILHGQIGG 99 (504)
Q Consensus 64 ~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~ 99 (504)
.++.+.++|.+....+-+++......+.+|..+|..
T Consensus 8 dle~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~ 43 (280)
T PF14992_consen 8 DLEKDEQRLDEANQSLLQKIQEKEGAIQSLEREITK 43 (280)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777777777777777777777777776655
No 340
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=96.76 E-value=0.1 Score=55.74 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 010679 208 MEKNYITMATEVEKLRAELMNA 229 (504)
Q Consensus 208 mek~L~sme~EiekLraELekl 229 (504)
|.++++.+...++.|+..|++|
T Consensus 366 ~~~N~~~i~~n~~~le~Ri~~L 387 (388)
T PF04912_consen 366 FKENMETIEKNVKKLEERIAKL 387 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 6666777788888888877765
No 341
>PLN03188 kinesin-12 family protein; Provisional
Probab=96.76 E-value=0.44 Score=57.00 Aligned_cols=16 Identities=6% Similarity=0.034 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 010679 53 QKIASQHVEMQKLATE 68 (504)
Q Consensus 53 qeLe~~~eEIq~Le~e 68 (504)
.++++..++++-++.+
T Consensus 1045 ~e~~l~~er~~w~e~e 1060 (1320)
T PLN03188 1045 PEKKLEQERLRWTEAE 1060 (1320)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 3444455555544443
No 342
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=96.75 E-value=0.63 Score=45.48 Aligned_cols=26 Identities=12% Similarity=0.247 Sum_probs=12.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhHHHH
Q 010679 169 QIPALLSELESLRQEYHHCRGTYEYE 194 (504)
Q Consensus 169 ql~~L~~EIeaLrqELq~LR~eLe~~ 194 (504)
++..+..+|++++..++.++.+++..
T Consensus 164 k~~~~~~ei~~~~~~~~~~~~~~~~i 189 (236)
T PF09325_consen 164 KVEQAENEIEEAERRVEQAKDEFEEI 189 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555444444
No 343
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.74 E-value=0.4 Score=52.77 Aligned_cols=26 Identities=12% Similarity=0.307 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 52 EQKIASQHVEMQKLATENQRLAATHG 77 (504)
Q Consensus 52 EqeLe~~~eEIq~Le~e~qrLe~qi~ 77 (504)
.+++..+.+.|+.|+..+.+|...+.
T Consensus 273 ~~~f~e~~~~i~~l~~~l~~l~~~~~ 298 (503)
T KOG2273|consen 273 DKEFTEKKEKIDKLEQQLKKLSKQVQ 298 (503)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555544444433
No 344
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=96.74 E-value=0.18 Score=50.56 Aligned_cols=6 Identities=17% Similarity=0.373 Sum_probs=2.2
Q ss_pred HHHHHH
Q 010679 221 KLRAEL 226 (504)
Q Consensus 221 kLraEL 226 (504)
-+..|+
T Consensus 157 a~~~E~ 162 (251)
T PF11932_consen 157 AYQIEM 162 (251)
T ss_pred HHHHHH
Confidence 333333
No 345
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=96.73 E-value=0.058 Score=62.61 Aligned_cols=14 Identities=36% Similarity=0.589 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHhh
Q 010679 83 LAAAQHELQILHGQ 96 (504)
Q Consensus 83 La~lqqEL~~L~~~ 96 (504)
|..+++||.-|+.+
T Consensus 1133 lnnlqqElklLRnE 1146 (1439)
T PF12252_consen 1133 LNNLQQELKLLRNE 1146 (1439)
T ss_pred HHHHHHHHHHHHhH
Confidence 33444444444443
No 346
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=96.72 E-value=0.6 Score=46.29 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 52 EQKIASQHVEMQKLATENQRLAATHGTL 79 (504)
Q Consensus 52 EqeLe~~~eEIq~Le~e~qrLe~qi~~L 79 (504)
..++...+..+..++.+..+....+..+
T Consensus 24 ~~~i~si~~n~s~~e~~i~qi~~~h~d~ 51 (280)
T COG5074 24 MNKILSINKNLSVYEKEINQIDNLHKDL 51 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555554444444443
No 347
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.71 E-value=0.79 Score=46.06 Aligned_cols=28 Identities=14% Similarity=0.194 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATH 76 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi 76 (504)
..+.+.+..+...|..++.-.+|+....
T Consensus 57 ~Emkey~d~L~~~L~~ieki~~Rl~kr~ 84 (243)
T cd07666 57 TEMNEYVEAFSQKINVLDKISQRIYKEQ 84 (243)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 3444445555555444444444444433
No 348
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=96.70 E-value=0.72 Score=46.05 Aligned_cols=12 Identities=17% Similarity=0.324 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 010679 55 IASQHVEMQKLA 66 (504)
Q Consensus 55 Le~~~eEIq~Le 66 (504)
|+.+...|..|.
T Consensus 31 i~~Le~~Lk~l~ 42 (234)
T cd07664 31 FENLDQQLRKLH 42 (234)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 349
>PTZ00464 SNF-7-like protein; Provisional
Probab=96.70 E-value=0.37 Score=47.39 Aligned_cols=24 Identities=8% Similarity=0.070 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 51 MEQKIASQHVEMQKLATENQRLAA 74 (504)
Q Consensus 51 LEqeLe~~~eEIq~Le~e~qrLe~ 74 (504)
+.+.+..++.++..|...+.+|..
T Consensus 16 ~~d~~~~l~~r~~~l~kKi~~ld~ 39 (211)
T PTZ00464 16 LEDASKRIGGRSEVVDARINKIDA 39 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444554444444444444433333
No 350
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=96.68 E-value=0.18 Score=51.35 Aligned_cols=14 Identities=14% Similarity=0.299 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHhh
Q 010679 177 LESLRQEYHHCRGT 190 (504)
Q Consensus 177 IeaLrqELq~LR~e 190 (504)
++++..|++.++++
T Consensus 310 L~eVm~e~E~~Kqe 323 (384)
T KOG0972|consen 310 LDEVMDEIEQLKQE 323 (384)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 351
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=96.68 E-value=0.003 Score=65.33 Aligned_cols=19 Identities=16% Similarity=0.347 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 010679 80 RQELAAAQHELQILHGQIG 98 (504)
Q Consensus 80 kqELa~lqqEL~~L~~~L~ 98 (504)
.-+|..+.++|..|+..+.
T Consensus 27 ~GDLs~I~eRLsaLEssv~ 45 (326)
T PF04582_consen 27 PGDLSPIRERLSALESSVA 45 (326)
T ss_dssp -------------------
T ss_pred cccHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 352
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=96.66 E-value=0.84 Score=45.73 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 202 LESLQVMEKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 202 ~eqlqemek~L~sme~EiekLraELek 228 (504)
.+..+.+....+.+.+|..+++.+|++
T Consensus 201 L~~Ye~lg~~F~~ivreY~~l~~~ie~ 227 (238)
T PF14735_consen 201 LESYEGLGPEFEEIVREYTDLQQEIEN 227 (238)
T ss_pred HHHHhcccHhHHHHHHHHHHHHHHHHH
Confidence 334444555666677777777777766
No 353
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=96.63 E-value=0.19 Score=53.57 Aligned_cols=16 Identities=6% Similarity=0.081 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 010679 130 LEFQKSKTEAQNLVVA 145 (504)
Q Consensus 130 aELeqLr~ELqeL~ae 145 (504)
.||++++.+|.+...+
T Consensus 309 kelE~lR~~L~kAEke 324 (575)
T KOG4403|consen 309 KELEQLRVALEKAEKE 324 (575)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555544433
No 354
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.058 Score=47.30 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=27.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679 181 RQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 231 (504)
Q Consensus 181 rqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~ 231 (504)
+++++++|.. ..+.++.+..++...++++..++++.++.+..|.++.+
T Consensus 64 kqel~EAr~n---V~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~ 111 (120)
T KOG3478|consen 64 KQELEEARTN---VGKRLEFISKEIKRLENQIRDSQEEFEKQREAVIKLQQ 111 (120)
T ss_pred HHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555543 23445555555666666666666666666666666554
No 355
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=96.62 E-value=0.059 Score=54.42 Aligned_cols=15 Identities=13% Similarity=0.189 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 010679 127 PVKLEFQKSKTEAQN 141 (504)
Q Consensus 127 ~LkaELeqLr~ELqe 141 (504)
+.+.||++|++-++.
T Consensus 121 EARkEIkQLkQvieT 135 (305)
T PF15290_consen 121 EARKEIKQLKQVIET 135 (305)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444433333
No 356
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=96.62 E-value=0.034 Score=50.71 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 200 DHLESLQVMEKNYITMATEVEKLRAEL 226 (504)
Q Consensus 200 el~eqlqemek~L~sme~EiekLraEL 226 (504)
.+.+.+..+.+++..+.++++++...+
T Consensus 105 ~l~~~~~~l~~~l~~~~~~~~~~~~~l 131 (140)
T PRK03947 105 ELEKALEKLEEALQKLASRIAQLAQEL 131 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 357
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.61 E-value=0.29 Score=49.46 Aligned_cols=37 Identities=22% Similarity=0.095 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Q 010679 192 EYEKKFYNDHLESLQVMEKNY-------ITMATEVEKLRAELMN 228 (504)
Q Consensus 192 e~~kk~~~el~eqlqemek~L-------~sme~EiekLraELek 228 (504)
+.+++....+.-.++.|-... +.|.....+|..||--
T Consensus 163 EgLkak~a~LafDLkamideKEELimERDa~kcKa~RLnhELfv 206 (389)
T KOG4687|consen 163 EGLKAKCAGLAFDLKAMIDEKEELIMERDAMKCKAARLNHELFV 206 (389)
T ss_pred HHHHHHhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 334444444444444443333 3344444444445443
No 358
>PF05149 Flagellar_rod: Paraflagellar rod protein; InterPro: IPR007824 This family consists of several eukaryotic paraflagellar rod component proteins. The eukaryotic flagellum represents one of the most complex macromolecular structures found in any organism and contains more than 250 proteins []. In addition to its locomotive role, the flagellum is probably involved in nutrient uptake since receptors for host low-density lipoproteins are localised on the flagellar membrane as well as on the flagellar pocket membrane [].; GO: 0005516 calmodulin binding, 0009434 microtubule-based flagellum
Probab=96.60 E-value=0.92 Score=46.62 Aligned_cols=19 Identities=26% Similarity=0.400 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q 010679 109 RNLTEKIAKMEAELKTAEP 127 (504)
Q Consensus 109 ~eL~eki~kLEaEL~ele~ 127 (504)
..|-..|..++.+|..+..
T Consensus 62 ~~lw~~i~el~~~L~~l~~ 80 (289)
T PF05149_consen 62 QELWREIQELERELQDLAE 80 (289)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444455555555554443
No 359
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.60 E-value=1.2 Score=48.05 Aligned_cols=14 Identities=21% Similarity=0.238 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 010679 131 EFQKSKTEAQNLVV 144 (504)
Q Consensus 131 ELeqLr~ELqeL~a 144 (504)
+++.+..+|.++..
T Consensus 115 e~~~le~~L~~~~~ 128 (438)
T COG4487 115 ELELLEKELDELSK 128 (438)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 360
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=96.60 E-value=0.74 Score=44.24 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 010679 73 AATHGTLRQELAAAQH 88 (504)
Q Consensus 73 e~qi~~LkqELa~lqq 88 (504)
...+..+.+.|+.+.+
T Consensus 16 ~~~~~~~~~~l~~l~~ 31 (204)
T PF04740_consen 16 NSSLKELKEQLESLQK 31 (204)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 361
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=96.59 E-value=0.36 Score=50.74 Aligned_cols=27 Identities=7% Similarity=0.007 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010679 203 ESLQVMEKNYITMATEVEKLRAELMNA 229 (504)
Q Consensus 203 eqlqemek~L~sme~EiekLraELekl 229 (504)
.++.+++.+++..+.-++.+...++++
T Consensus 278 ~~~~~L~re~~~a~~~y~~~l~r~~~a 304 (362)
T TIGR01010 278 ADYQRLVLQNELAQQQLKAALTSLQQT 304 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 362
>PTZ00464 SNF-7-like protein; Provisional
Probab=96.59 E-value=0.29 Score=48.15 Aligned_cols=31 Identities=10% Similarity=0.109 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATHGTL 79 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~L 79 (504)
..++.++..+..+|..|..++..+...+...
T Consensus 21 ~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~ 51 (211)
T PTZ00464 21 KRIGGRSEVVDARINKIDAELMKLKEQIQRT 51 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566666666666666666655555544433
No 363
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=96.59 E-value=0.19 Score=43.98 Aligned_cols=34 Identities=21% Similarity=0.187 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 010679 177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEK 210 (504)
Q Consensus 177 IeaLrqELq~LR~eLe~~kk~~~el~eqlqemek 210 (504)
+..|+.++.+++..++..+-.+.++..++...++
T Consensus 60 ~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~~~ 93 (107)
T PF09304_consen 60 IAELQAKIDEARRNLEDEKQAKLELESRLLKAQK 93 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444455555555555544444444444444433
No 364
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=96.58 E-value=0.071 Score=55.60 Aligned_cols=17 Identities=12% Similarity=0.218 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010679 51 MEQKIASQHVEMQKLAT 67 (504)
Q Consensus 51 LEqeLe~~~eEIq~Le~ 67 (504)
++.++..++.++..++.
T Consensus 84 ~~~~l~~a~a~l~~a~a 100 (346)
T PRK10476 84 YELTVAQAQADLALADA 100 (346)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444443333
No 365
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=96.58 E-value=0.22 Score=46.40 Aligned_cols=19 Identities=16% Similarity=0.176 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHhhHHHHH
Q 010679 177 LESLRQEYHHCRGTYEYEK 195 (504)
Q Consensus 177 IeaLrqELq~LR~eLe~~k 195 (504)
++.+..+++.++.++...+
T Consensus 141 ~~~~l~~~~~~~~~~~~~~ 159 (213)
T cd00176 141 VEELLKKHKELEEELEAHE 159 (213)
T ss_pred HHHHHHHHHHHHHHHHhch
Confidence 3333333344444443333
No 366
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=96.58 E-value=1 Score=50.35 Aligned_cols=17 Identities=18% Similarity=0.399 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHhhhcc
Q 010679 83 LAAAQHELQILHGQIGG 99 (504)
Q Consensus 83 La~lqqEL~~L~~~L~~ 99 (504)
+..+..++..|..+|..
T Consensus 253 i~~a~~~i~~L~~~l~~ 269 (582)
T PF09731_consen 253 IAHAKERIDALQKELAE 269 (582)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 367
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=96.57 E-value=0.95 Score=45.23 Aligned_cols=88 Identities=11% Similarity=0.154 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHH-----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------hhhH
Q 010679 107 QMRNLTEKIAKMEAELK-----TAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ---------QIPA 172 (504)
Q Consensus 107 eL~eL~eki~kLEaEL~-----ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elq---------ql~~ 172 (504)
++.++.++|..+-++.. .+.....|.-.+-.-+..+-.+|..+-...+.++.+|++.+..+. ++..
T Consensus 84 ~laev~~~i~~~~~~qa~qd~~~f~e~l~eYiRli~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~~~dK~~~ 163 (234)
T cd07665 84 QLAEVEEKIEQLHQEQANNDFFLLAELLADYIRLLSAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWANKPDKLQQ 163 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 44444555544433332 222333444444444555555555555555555555554333322 2333
Q ss_pred HHHHHHHHHHHHHHHHhhHHHH
Q 010679 173 LLSELESLRQEYHHCRGTYEYE 194 (504)
Q Consensus 173 L~~EIeaLrqELq~LR~eLe~~ 194 (504)
+..|+..++...+.++.+++..
T Consensus 164 a~~Ev~e~e~k~~~a~~~fe~i 185 (234)
T cd07665 164 AKDEIAEWESRVTQYERDFERI 185 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433
No 368
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=96.57 E-value=1.2 Score=48.12 Aligned_cols=49 Identities=10% Similarity=0.106 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 103 ERELQMRNLTEKIAKMEAELKT----AEPVKLEFQKSKTEAQNLVVAREELIA 151 (504)
Q Consensus 103 e~E~eL~eL~eki~kLEaEL~e----le~LkaELeqLr~ELqeL~aerqeL~a 151 (504)
+++.-+.+|++.+..++..... +......+..+...+.++...+.++..
T Consensus 252 El~~V~~el~~~~~~~~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 304 (412)
T PF04108_consen 252 ELPDVVKELQERLDEMENNEERTKKLLQSQRDHIRELYNALSEALEELRKFGE 304 (412)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666655544 333333344444433333333333333
No 369
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=96.57 E-value=0.19 Score=49.58 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 127 PVKLEFQKSKTEAQNLVVAREELIA 151 (504)
Q Consensus 127 ~LkaELeqLr~ELqeL~aerqeL~a 151 (504)
.++.++..++.+++++...|+..+.
T Consensus 147 ~le~~l~~~k~~ie~vN~~RK~~Q~ 171 (221)
T PF05700_consen 147 RLEKELAKLKKEIEEVNRERKRRQE 171 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555544333
No 370
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=96.56 E-value=0.12 Score=54.83 Aligned_cols=21 Identities=24% Similarity=0.161 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010679 73 AATHGTLRQELAAAQHELQIL 93 (504)
Q Consensus 73 e~qi~~LkqELa~lqqEL~~L 93 (504)
.+.+..|+.+|+...+...++
T Consensus 12 dqr~~~~~~~laq~~k~~s~~ 32 (459)
T KOG0288|consen 12 DQRLIDLNTELAQCEKAQSRL 32 (459)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 333333444444333333333
No 371
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=96.55 E-value=0.35 Score=51.86 Aligned_cols=37 Identities=16% Similarity=0.052 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 010679 173 LLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVME 209 (504)
Q Consensus 173 L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqeme 209 (504)
++.|+++++.|+.--+++++.++..+-.|..++++||
T Consensus 307 s~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~E 343 (554)
T KOG4677|consen 307 SRKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIE 343 (554)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444333333333333333333333333333
No 372
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=0.42 Score=55.01 Aligned_cols=63 Identities=17% Similarity=0.268 Sum_probs=38.3
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhccch
Q 010679 39 FPPFDMMPPPEVMEQKIASQHVEMQKLATENQR---LAATHGTLRQELAAAQHELQILHGQIGGMK 101 (504)
Q Consensus 39 ~~~~~~~p~~~~LEqeLe~~~eEIq~Le~e~qr---Le~qi~~LkqELa~lqqEL~~L~~~L~~l~ 101 (504)
|.|.-.-|.+..+-++|.....+|+..+.+... |.++.......|+.++.+|..+...|..+.
T Consensus 174 yKP~GrnP~iNq~l~klkq~~~ei~e~eke~a~yh~lLe~r~~~~~rl~~l~~elr~~~~~i~~~~ 239 (984)
T COG4717 174 YKPSGRNPQINQLLEKLKQERNEIDEAEKEYATYHKLLESRRAEHARLAELRSELRADRDHIRALR 239 (984)
T ss_pred cCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666677777777777777777666555443 334444444556666666666666665533
No 373
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=96.54 E-value=0.083 Score=51.81 Aligned_cols=34 Identities=21% Similarity=0.436 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDL 160 (504)
Q Consensus 127 ~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~EL 160 (504)
.++..++.++.+++++..+..+|..++.+|+.++
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ 165 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEY 165 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444333333333333
No 374
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=96.52 E-value=0.88 Score=44.24 Aligned_cols=12 Identities=17% Similarity=0.379 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 010679 54 KIASQHVEMQKL 65 (504)
Q Consensus 54 eLe~~~eEIq~L 65 (504)
.+.....+...+
T Consensus 28 ~~~~A~~~A~~i 39 (201)
T PF12072_consen 28 KLEQAEKEAEQI 39 (201)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 375
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=96.52 E-value=0.13 Score=54.91 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 175 SELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLR 223 (504)
Q Consensus 175 ~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLr 223 (504)
.||..|+++|...+..+++. ..++.+++.+.|+++...|.+|+
T Consensus 276 ~Ei~~LKqeLa~~EEK~~Yq------s~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 276 NEIYNLKQELASMEEKMAYQ------SYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHhHHHHHHHH------HHHHHhHHHHHHHHHHHHHHHHH
Confidence 34555555554444444332 12233444444444444444444
No 376
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=96.52 E-value=0.13 Score=52.11 Aligned_cols=61 Identities=13% Similarity=0.155 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010679 170 IPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP 230 (504)
Q Consensus 170 l~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle 230 (504)
+.....+++.+..++.+.+.++...+..+.+...++..++.+...|.+.+..++.+|+++.
T Consensus 202 l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~ 262 (269)
T PF05278_consen 202 LELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFH 262 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445566777777777777777777777777777777777777778888888888888764
No 377
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=96.51 E-value=0.49 Score=47.71 Aligned_cols=41 Identities=17% Similarity=0.374 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010679 127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDV 167 (504)
Q Consensus 127 ~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~el 167 (504)
.+..++++++..|..+......|..+|+.-+.++.++++++
T Consensus 116 ~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRl 156 (338)
T KOG3647|consen 116 AIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRL 156 (338)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555544443
No 378
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=96.50 E-value=0.6 Score=46.48 Aligned_cols=32 Identities=9% Similarity=0.034 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679 200 DHLESLQVMEKNYITMATEVEKLRAELMNAPN 231 (504)
Q Consensus 200 el~eqlqemek~L~sme~EiekLraELekle~ 231 (504)
.+.+-+..+.+.|+.+......++++|+++.|
T Consensus 216 qi~Kilnah~~sLqwl~d~st~~e~k~d~i~K 247 (254)
T KOG2196|consen 216 QIEKILNAHMDSLQWLDDNSTQLEKKLDKIKK 247 (254)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 34444445555555555555555555555444
No 379
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.49 E-value=0.32 Score=53.27 Aligned_cols=12 Identities=8% Similarity=0.072 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 010679 145 AREELIAKVHQL 156 (504)
Q Consensus 145 erqeL~aqvq~L 156 (504)
+.+.|.+-++.+
T Consensus 670 ~~~~L~~~iET~ 681 (741)
T KOG4460|consen 670 QLRHLGNAIETV 681 (741)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 380
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=96.49 E-value=0.78 Score=49.45 Aligned_cols=20 Identities=15% Similarity=0.066 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q 010679 212 YITMATEVEKLRAELMNAPN 231 (504)
Q Consensus 212 L~sme~EiekLraELekle~ 231 (504)
.+.|++-+..+..+|+++..
T Consensus 362 ~~k~~~i~~~~~eeL~~l~e 381 (412)
T PF04108_consen 362 RDKMKKIIREANEELDKLRE 381 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34567777888888888776
No 381
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=96.48 E-value=1.1 Score=46.25 Aligned_cols=24 Identities=17% Similarity=0.123 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 53 QKIASQHVEMQKLATENQRLAATH 76 (504)
Q Consensus 53 qeLe~~~eEIq~Le~e~qrLe~qi 76 (504)
++.+..+++-......+.++.+.+
T Consensus 41 Q~~EQAr~~A~~fA~~ld~~~~kl 64 (301)
T PF06120_consen 41 QNAEQARQEAIEFADSLDELKEKL 64 (301)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344444444333333333433333
No 382
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=96.47 E-value=0.12 Score=55.16 Aligned_cols=55 Identities=11% Similarity=0.061 Sum_probs=32.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 010679 181 RQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRR 235 (504)
Q Consensus 181 rqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~~~~~ 235 (504)
+.+.+++.++.....+.+....-++-+.+.++.+++.+++=-..+++++++.+..
T Consensus 217 ~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~ktNv~ 271 (447)
T KOG2751|consen 217 EFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRKTNVF 271 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3333333333333444444555555556677777777777777778887764433
No 383
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=96.46 E-value=1.3 Score=46.85 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679 206 QVMEKNYITMATEVEKLRAELMNAPN 231 (504)
Q Consensus 206 qemek~L~sme~EiekLraELekle~ 231 (504)
..+.++.+.+.+|+++.++|++.++.
T Consensus 352 aaLrkerd~L~keLeekkreleql~~ 377 (442)
T PF06637_consen 352 AALRKERDSLAKELEEKKRELEQLKM 377 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777788877777777764
No 384
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=96.46 E-value=0.85 Score=44.55 Aligned_cols=45 Identities=18% Similarity=0.242 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQIL 93 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L 93 (504)
+.++.++..+...+..|..+..+....+..+..--..+...+..+
T Consensus 5 ~~~~~~f~~~e~~~~kL~k~~k~y~~a~~~l~~~~~~~~~~~~~l 49 (216)
T cd07599 5 EELEKDFKSLEKSLKKLIEQSKAFRDSWRSILTHQIAFAKEFAEL 49 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666655443333333333333
No 385
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=96.46 E-value=0.088 Score=56.25 Aligned_cols=33 Identities=24% Similarity=0.265 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010679 65 LATENQRLAATHGTLRQELAAAQHELQILHGQI 97 (504)
Q Consensus 65 Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L 97 (504)
.+..|++....|..|+.+|+...++|.+++..-
T Consensus 53 FekkNqksa~~i~~lqkkL~~y~~~l~ele~~~ 85 (395)
T PF10267_consen 53 FEKKNQKSAQTIAQLQKKLEQYHKRLKELEQGG 85 (395)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 345577777778888888888887777776654
No 386
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=96.46 E-value=0.0048 Score=63.78 Aligned_cols=26 Identities=12% Similarity=0.170 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 203 ESLQVMEKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 203 eqlqemek~L~sme~EiekLraELek 228 (504)
..+..+.-++..|++.++.|+.....
T Consensus 133 sdVSt~aL~ItdLe~RV~~LEs~~s~ 158 (326)
T PF04582_consen 133 SDVSTQALNITDLESRVKALESGSSS 158 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred hhhhhhcchHhhHHHHHHHHhcCCCC
Confidence 33344444555555555555555443
No 387
>COG5293 Predicted ATPase [General function prediction only]
Probab=96.44 E-value=0.92 Score=48.97 Aligned_cols=66 Identities=14% Similarity=0.088 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHH
Q 010679 128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYE 194 (504)
Q Consensus 128 LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~ 194 (504)
++.||.+++.+|.++..++++|..++.++..-|.. ..-..+...+..++-+++.||.+++-.++.+
T Consensus 340 l~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~-~g~~e~y~~l~ee~~~~~~elae~~~rie~l 405 (591)
T COG5293 340 LQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKN-RGVFEKYQTLCEEIIALRGELAELEYRIEPL 405 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHhhhHHHHHHhhhHH
Confidence 44455555555555555555555554444333321 0011223333444444444555444444443
No 388
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=96.44 E-value=0.33 Score=49.75 Aligned_cols=13 Identities=23% Similarity=0.281 Sum_probs=6.5
Q ss_pred HHHHHHHHHHhhH
Q 010679 179 SLRQEYHHCRGTY 191 (504)
Q Consensus 179 aLrqELq~LR~eL 191 (504)
-|+.|+++|+..|
T Consensus 119 ~lQgEmQ~LrDKL 131 (351)
T PF07058_consen 119 FLQGEMQQLRDKL 131 (351)
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555443
No 389
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.44 E-value=0.51 Score=48.73 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATH 76 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi 76 (504)
+..=++++..+..|..|.....+|...+
T Consensus 36 ~~Ff~~ve~Ir~~i~~l~~~~~~l~~~h 63 (297)
T KOG0810|consen 36 EEFFEDVEEIRDDIEKLDEDVEKLQKLH 63 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555566666666666666666666555
No 390
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=96.43 E-value=0.43 Score=52.38 Aligned_cols=49 Identities=18% Similarity=0.285 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 172 ALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLR 223 (504)
Q Consensus 172 ~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLr 223 (504)
.+...|..|+.||..-|.-+ +.++..+.+++-.|.++|.+...+|+.|+
T Consensus 466 ~a~~~i~~LqDEL~TTr~NY---E~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 466 EANQNISRLQDELETTRRNY---EEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555555555444432 23455555555555555555555555554
No 391
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=96.43 E-value=1.2 Score=44.68 Aligned_cols=51 Identities=24% Similarity=0.301 Sum_probs=29.5
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010679 45 MPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG 98 (504)
Q Consensus 45 ~p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~ 98 (504)
.|-++.-=++|+...++|..|+.++......+..+ |.....+|..+.+.|.
T Consensus 6 dprVq~eLe~LN~atd~IN~lE~~L~~ar~~fr~~---l~e~~~kL~~~~kkLg 56 (239)
T PF05276_consen 6 DPRVQEELEKLNQATDEINRLENELDEARATFRRL---LSESTKKLNELAKKLG 56 (239)
T ss_pred ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 34555444577777778888877665555544433 3444555555555544
No 392
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=96.43 E-value=1.2 Score=44.73 Aligned_cols=16 Identities=6% Similarity=0.156 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHhcc
Q 010679 215 MATEVEKLRAELMNAP 230 (504)
Q Consensus 215 me~EiekLraELekle 230 (504)
+..-.+.++..|+.+.
T Consensus 220 ~~~~~e~~~~~~~~id 235 (261)
T cd07648 220 VGQVHEEFKRQVDELT 235 (261)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 3444455555555544
No 393
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.42 E-value=0.14 Score=55.55 Aligned_cols=29 Identities=17% Similarity=0.261 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 010679 132 FQKSKTEAQNLVVAR---EELIAKVHQLTQDL 160 (504)
Q Consensus 132 LeqLr~ELqeL~aer---qeL~aqvq~L~~EL 160 (504)
-++|+.+|+.|..++ .+|..+++.|.+.+
T Consensus 413 EE~Lr~Kldtll~~ln~Pnq~k~Rl~~L~e~~ 444 (508)
T KOG3091|consen 413 EEELRAKLDTLLAQLNAPNQLKARLDELYEIL 444 (508)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 344444544444443 45555565555444
No 394
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.064 Score=47.98 Aligned_cols=36 Identities=17% Similarity=0.201 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010679 194 EKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 229 (504)
Q Consensus 194 ~kk~~~el~eqlqemek~L~sme~EiekLraELekl 229 (504)
+++.++.+..+++.++++...+..++++|+++|-++
T Consensus 75 L~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 75 LEERKETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666666666677777666553
No 395
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.40 E-value=1.1 Score=44.02 Aligned_cols=46 Identities=9% Similarity=0.083 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010679 52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI 97 (504)
Q Consensus 52 EqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L 97 (504)
++++..+.+.|..++....+|-..+..+....+.+......+.+.+
T Consensus 3 ~~~~k~i~~~i~~lE~hl~~l~~~~~~lv~k~~~L~~~~~~fak~~ 48 (211)
T cd07598 3 DNQTKFIQERITNVEKHFGELCQDFAAYTRKTARLRDKGDELAKSI 48 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4566666677777776666666666665555444444444444443
No 396
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=96.38 E-value=0.096 Score=46.05 Aligned_cols=25 Identities=12% Similarity=0.298 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 132 FQKSKTEAQNLVVAREELIAKVHQL 156 (504)
Q Consensus 132 LeqLr~ELqeL~aerqeL~aqvq~L 156 (504)
++.++.+++.+..++..|..++.+.
T Consensus 12 ~q~~q~~~~~l~~q~~~le~~~~E~ 36 (110)
T TIGR02338 12 LQQLQQQLQAVATQKQQVEAQLKEA 36 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333343444443333333
No 397
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=96.36 E-value=1.3 Score=45.01 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010679 64 KLATENQRLAATHGTLRQELAAAQHELQILHGQI 97 (504)
Q Consensus 64 ~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L 97 (504)
.|..-..++...+.+.++.|.....+-..++...
T Consensus 33 ~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~ 66 (296)
T PF13949_consen 33 ELPELSQEVRSILDEIEEMLDEEEREDEQLRAKY 66 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333444444455555554444444444444
No 398
>PRK09343 prefoldin subunit beta; Provisional
Probab=96.36 E-value=0.094 Score=47.05 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 203 ESLQVMEKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 203 eqlqemek~L~sme~EiekLraELek 228 (504)
.+++.++++...+++.+++++.+|..
T Consensus 85 ~~ik~lekq~~~l~~~l~e~q~~l~~ 110 (121)
T PRK09343 85 LRSRTLEKQEKKLREKLKELQAKINE 110 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444
No 399
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=96.35 E-value=1.1 Score=47.89 Aligned_cols=37 Identities=11% Similarity=0.104 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679 195 KKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 231 (504)
Q Consensus 195 kk~~~el~eqlqemek~L~sme~EiekLraELekle~ 231 (504)
++.+.+.++...+++.++..+.+||.+.+..|+.+++
T Consensus 277 ~~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~ 313 (421)
T KOG2685|consen 277 KKRIRETQDARNKLEWQLAKTLEEIADAENNIEALER 313 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3445556666666777777777777777777777665
No 400
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=96.34 E-value=1.1 Score=43.49 Aligned_cols=14 Identities=21% Similarity=0.418 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHhh
Q 010679 177 LESLRQEYHHCRGT 190 (504)
Q Consensus 177 IeaLrqELq~LR~e 190 (504)
|..|+.|+..+..+
T Consensus 165 I~sL~~e~~~~~~d 178 (201)
T PF11172_consen 165 IASLQGEFSSIESD 178 (201)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 401
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=96.34 E-value=0.12 Score=59.42 Aligned_cols=13 Identities=8% Similarity=0.271 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 010679 109 RNLTEKIAKMEAE 121 (504)
Q Consensus 109 ~eL~eki~kLEaE 121 (504)
++|.+.+.+..++
T Consensus 68 ~~Lsq~L~~~~~r 80 (835)
T COG3264 68 DQLSQALNQQTER 80 (835)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 402
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=96.33 E-value=1 Score=48.90 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=9.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhH
Q 010679 170 IPALLSELESLRQEYHHCRGTY 191 (504)
Q Consensus 170 l~~L~~EIeaLrqELq~LR~eL 191 (504)
+..++.+|.+|+++|+..+..+
T Consensus 316 V~~l~~rI~aLe~QIa~er~kl 337 (434)
T PRK15178 316 IPRLSAKIKVLEKQIGEQRNRL 337 (434)
T ss_pred hhHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444433
No 403
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=96.29 E-value=0.83 Score=45.78 Aligned_cols=50 Identities=24% Similarity=0.355 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010679 177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP 230 (504)
Q Consensus 177 IeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle 230 (504)
++.++++++.++..|+ .++.+-..+.++-++...+.++|+..+=.|++++
T Consensus 187 ~~~~e~~~~~a~~~L~----~Ye~lg~~F~~ivreY~~l~~~ie~k~Wal~e~~ 236 (238)
T PF14735_consen 187 IEELEQELQKARQRLE----SYEGLGPEFEEIVREYTDLQQEIENKRWALEEFS 236 (238)
T ss_pred HHHHHHHHHHHHHHHH----HHhcccHhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444444433 2334444566666666666777777776666654
No 404
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=96.27 E-value=1 Score=42.36 Aligned_cols=32 Identities=31% Similarity=0.350 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 64 KLATENQRLAATHGTLRQELAAAQHELQILHG 95 (504)
Q Consensus 64 ~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~ 95 (504)
......++|...+..++.+|+.+..++.....
T Consensus 12 rr~R~~~rL~~~L~~~r~al~~~~a~~~~~~a 43 (158)
T PF09486_consen 12 RRRRRERRLRARLAAQRRALAAAEAELAEQQA 43 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555555555555554444444333
No 405
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=96.26 E-value=0.32 Score=52.68 Aligned_cols=23 Identities=17% Similarity=0.075 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Q 010679 77 GTLRQELAAAQHELQILHGQIGG 99 (504)
Q Consensus 77 ~~LkqELa~lqqEL~~L~~~L~~ 99 (504)
.-.+++++.+++++...+..|..
T Consensus 245 ~~Ae~ev~~Ae~rl~~Ar~aL~~ 267 (434)
T PRK15178 245 LWLENDVKSAQENLGAARLELLK 267 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 406
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.25 E-value=0.78 Score=44.31 Aligned_cols=36 Identities=11% Similarity=0.192 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELA 84 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa 84 (504)
..|..-|.....+-+.++..+.+|..++..++.+|.
T Consensus 15 psL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~ 50 (218)
T KOG1655|consen 15 PSLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIK 50 (218)
T ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555544433
No 407
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.23 E-value=0.32 Score=53.59 Aligned_cols=32 Identities=19% Similarity=0.334 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLR 80 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~Lk 80 (504)
..++-+|+.++.+|++++.++..|...|..|.
T Consensus 335 ~~~~~~~~~~~Tr~Er~Er~~D~L~rri~~~~ 366 (852)
T KOG4787|consen 335 ELAESQVQHLNTKIERLEKTNDHLNKKIVELE 366 (852)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 44455555555555555555555544444443
No 408
>PRK09343 prefoldin subunit beta; Provisional
Probab=96.23 E-value=0.1 Score=46.85 Aligned_cols=32 Identities=0% Similarity=-0.003 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 193 YEKKFYNDHLESLQVMEKNYITMATEVEKLRA 224 (504)
Q Consensus 193 ~~kk~~~el~eqlqemek~L~sme~EiekLra 224 (504)
.+...+..++++...+++++..++.+|.++-.
T Consensus 82 ~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~ 113 (121)
T PRK09343 82 LLELRSRTLEKQEKKLREKLKELQAKINEMLS 113 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444433
No 409
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=96.20 E-value=1.5 Score=43.45 Aligned_cols=59 Identities=19% Similarity=0.325 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 107 QMRNLTEKIAKMEAELKTAE-----PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT 165 (504)
Q Consensus 107 eL~eL~eki~kLEaEL~ele-----~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~ 165 (504)
++.++.+++.+++.....-+ .+..+...+-.-+..+..+|...-..-+.....|++.+.
T Consensus 85 ~lae~~ek~~~l~~r~A~~d~l~L~e~L~~Y~r~~~A~K~~l~rR~ral~~~q~A~k~L~KaR~ 148 (219)
T cd07621 85 KVAETFEKLRKLEGRVASDEDLKLSDTLRYYMRDTQAAKDLLYRRLRCLANYENANKNLEKARA 148 (219)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 44455555555554443222 222222233333344444444444444455555554443
No 410
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=96.20 E-value=1.2 Score=51.58 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITM 215 (504)
Q Consensus 177 IeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sm 215 (504)
+..|+++...+...|+..-+.+..+.-.++.+++.|...
T Consensus 813 ~a~lr~~~~slk~~l~e~ar~Wasl~~~~~vl~e~l~~~ 851 (984)
T COG4717 813 VAELRQRRESLKEDLEEKARKWASLRLAVQVLEEALRLF 851 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555443
No 411
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=96.19 E-value=1.3 Score=45.14 Aligned_cols=27 Identities=15% Similarity=0.059 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 010679 176 ELESLRQEYHHCRGTYEYEKKFYNDHL 202 (504)
Q Consensus 176 EIeaLrqELq~LR~eLe~~kk~~~el~ 202 (504)
.|..|++||.+++.+.....+.+..++
T Consensus 166 kl~~LeqELvraEae~lvaEAqL~n~k 192 (271)
T PF13805_consen 166 KLVVLEQELVRAEAENLVAEAQLSNIK 192 (271)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhh
Confidence 466677777666666555555555444
No 412
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=96.19 E-value=0.12 Score=47.22 Aligned_cols=34 Identities=26% Similarity=0.305 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 192 EYEKKFYNDHLESLQVMEKNYITMATEVEKLRAE 225 (504)
Q Consensus 192 e~~kk~~~el~eqlqemek~L~sme~EiekLraE 225 (504)
+.+.+.+..+.+.+..+.++++.+...+.++..+
T Consensus 104 ~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 104 EELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444555555555555555555444
No 413
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=96.19 E-value=0.088 Score=46.27 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 136 KTEAQNLVVAREELIAKVHQLTQDL 160 (504)
Q Consensus 136 r~ELqeL~aerqeL~aqvq~L~~EL 160 (504)
..+++.++.+++.+..+++.|+.++
T Consensus 9 ~~~~q~~q~~~~~l~~q~~~le~~~ 33 (110)
T TIGR02338 9 LAQLQQLQQQLQAVATQKQQVEAQL 33 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444333
No 414
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.15 Score=45.65 Aligned_cols=25 Identities=16% Similarity=0.444 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 131 EFQKSKTEAQNLVVAREELIAKVHQ 155 (504)
Q Consensus 131 ELeqLr~ELqeL~aerqeL~aqvq~ 155 (504)
++++++.+++.+..+++.++.++++
T Consensus 14 q~QqLq~ql~~~~~qk~~le~qL~E 38 (119)
T COG1382 14 QLQQLQQQLQKVILQKQQLEAQLKE 38 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444443333
No 415
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.17 E-value=1 Score=44.06 Aligned_cols=77 Identities=19% Similarity=0.214 Sum_probs=35.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhhccc----hHHHHHHHHHHHHHHHH
Q 010679 47 PPEVMEQKIASQHVEMQKLATENQRLA-----ATHGTLRQELAAAQHELQILHGQIGGM----KSERELQMRNLTEKIAK 117 (504)
Q Consensus 47 ~~~~LEqeLe~~~eEIq~Le~e~qrLe-----~qi~~LkqELa~lqqEL~~L~~~L~~l----~ae~E~eL~eL~eki~k 117 (504)
+.+..|++...+.++|.........+. ..+.+.+..|+++++-|.++..++..+ +.-...++++.+..+.+
T Consensus 4 ~fe~yEqqy~~l~a~it~k~~~~~~~~~~ekk~~l~~i~~~leEa~ell~qMdlEvr~lp~~~Rs~~~~KlR~yksdl~~ 83 (220)
T KOG1666|consen 4 LFEGYEQQYRELSAEITKKIGRALSLPGSEKKQLLSEIDSKLEEANELLDQMDLEVRELPPNFRSSYLSKLREYKSDLKK 83 (220)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhcCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHHH
Confidence 345566777777776665544433332 123333334444444444444444332 22233344444444444
Q ss_pred HHHHHH
Q 010679 118 MEAELK 123 (504)
Q Consensus 118 LEaEL~ 123 (504)
++.|++
T Consensus 84 l~~e~k 89 (220)
T KOG1666|consen 84 LKRELK 89 (220)
T ss_pred HHHHHH
Confidence 444444
No 416
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=96.14 E-value=0.36 Score=49.73 Aligned_cols=18 Identities=6% Similarity=-0.021 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 010679 212 YITMATEVEKLRAELMNA 229 (504)
Q Consensus 212 L~sme~EiekLraELekl 229 (504)
+..++.+++.++..++++
T Consensus 188 i~~~~~~l~~a~~~l~~~ 205 (334)
T TIGR00998 188 VQEAKERLKTAWLALKRT 205 (334)
T ss_pred HHHHHHHHHHHHHHhhCc
Confidence 444445555555555443
No 417
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.14 E-value=0.4 Score=54.30 Aligned_cols=15 Identities=27% Similarity=0.282 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHH
Q 010679 212 YITMATEVEKLRAEL 226 (504)
Q Consensus 212 L~sme~EiekLraEL 226 (504)
+..+..-+++|+++.
T Consensus 228 l~~L~~~v~~l~~~k 242 (660)
T KOG4302|consen 228 LDRLDKMVKKLKEEK 242 (660)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344556666665553
No 418
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=96.13 E-value=1.2 Score=41.92 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010679 73 AATHGTLRQELAAAQHELQILHGQIGG 99 (504)
Q Consensus 73 e~qi~~LkqELa~lqqEL~~L~~~L~~ 99 (504)
......|+..|..+..++..+...++.
T Consensus 14 ~R~~~rL~~~L~~~r~al~~~~a~~~~ 40 (158)
T PF09486_consen 14 RRRERRLRARLAAQRRALAAAEAELAE 40 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555444443
No 419
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=96.13 E-value=0.92 Score=51.89 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Q 010679 208 MEKNYITMATEVEKLRAELMNAP 230 (504)
Q Consensus 208 mek~L~sme~EiekLraELekle 230 (504)
.+.-+.-|...++.++.++++.+
T Consensus 1202 ~eaiIa~ld~d~dh~~de~ekdr 1224 (1424)
T KOG4572|consen 1202 TEAIIAMLDIDIDHDRDEIEKDR 1224 (1424)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHH
Confidence 44455567888888888888765
No 420
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=96.12 E-value=1.4 Score=42.40 Aligned_cols=20 Identities=25% Similarity=0.192 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010679 207 VMEKNYITMATEVEKLRAEL 226 (504)
Q Consensus 207 emek~L~sme~EiekLraEL 226 (504)
+..+.+..++.|-+.|+.-|
T Consensus 157 ~~qe~i~qL~~EN~~LRelL 176 (181)
T PF05769_consen 157 EEQEIIAQLETENKGLRELL 176 (181)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666666554
No 421
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=96.12 E-value=1.6 Score=43.16 Aligned_cols=18 Identities=33% Similarity=0.521 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010679 106 LQMRNLTEKIAKMEAELK 123 (504)
Q Consensus 106 ~eL~eL~eki~kLEaEL~ 123 (504)
.++.++.+++.+++....
T Consensus 83 s~lae~~Ek~~~l~~r~A 100 (218)
T cd07663 83 LKVAELFEKLRKVEDRVA 100 (218)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555666666555443
No 422
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=96.12 E-value=1.5 Score=43.55 Aligned_cols=15 Identities=7% Similarity=0.372 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 010679 51 MEQKIASQHVEMQKL 65 (504)
Q Consensus 51 LEqeLe~~~eEIq~L 65 (504)
+...+.....++.+.
T Consensus 30 i~~n~s~~e~~i~qi 44 (280)
T COG5074 30 INKNLSVYEKEINQI 44 (280)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444333
No 423
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=96.12 E-value=0.12 Score=46.73 Aligned_cols=36 Identities=11% Similarity=0.170 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR 162 (504)
Q Consensus 127 ~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~ 162 (504)
.++.|+..++.++..+..++..+...+..|+..|..
T Consensus 86 ~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ 121 (126)
T PF07889_consen 86 QIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDE 121 (126)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555555443
No 424
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=96.12 E-value=0.054 Score=51.04 Aligned_cols=64 Identities=20% Similarity=0.236 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Q 010679 132 FQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKK 196 (504)
Q Consensus 132 LeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk 196 (504)
+..+..++.+++.++.+|..++..|+.+|..+..... ..++..+|..|+.|+..++..|+.++.
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t-~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPT-NEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444555555555555555554444321 234555566666666666655555443
No 425
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=96.11 E-value=0.42 Score=49.00 Aligned_cols=35 Identities=11% Similarity=0.053 Sum_probs=16.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 46 PPPEVMEQKIASQHVEMQKLATENQRLAATHGTLR 80 (504)
Q Consensus 46 p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~Lk 80 (504)
.+-..|..+|++|++|-.-|+.-+++-..+++.|.
T Consensus 7 N~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLs 41 (351)
T PF07058_consen 7 NQNQELMKQIEICQEENKILDKMHRQKVLEVEKLS 41 (351)
T ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666655544444333333333333
No 426
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=96.10 E-value=0.55 Score=54.54 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 010679 75 THGTLRQELAAAQHELQILHGQI 97 (504)
Q Consensus 75 qi~~LkqELa~lqqEL~~L~~~L 97 (504)
++..++++...+++++..++.++
T Consensus 71 ev~~l~~ea~~L~~~~~~v~~~~ 93 (766)
T PF10191_consen 71 EVDRLRQEAASLQEQMASVQEEI 93 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 427
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=96.09 E-value=1.7 Score=44.59 Aligned_cols=15 Identities=33% Similarity=0.519 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHhc
Q 010679 215 MATEVEKLRAELMNA 229 (504)
Q Consensus 215 me~EiekLraELekl 229 (504)
...+++.|+.||..|
T Consensus 282 ~~~~~~~l~~ei~~L 296 (297)
T PF02841_consen 282 FQEEAEKLQKEIQDL 296 (297)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 345555555555544
No 428
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=96.08 E-value=0.11 Score=45.14 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 129 KLEFQKSKTEAQNLVVAREELIAKVHQLT 157 (504)
Q Consensus 129 kaELeqLr~ELqeL~aerqeL~aqvq~L~ 157 (504)
..+++.++.+++.+..+++.|..++.+..
T Consensus 5 ~~~~q~l~~~~~~l~~~~~~l~~~~~E~~ 33 (105)
T cd00632 5 LAQLQQLQQQLQAYIVQRQKVEAQLNENK 33 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555544444443
No 429
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=96.07 E-value=1.7 Score=42.94 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 010679 54 KIASQHVEMQKLATE 68 (504)
Q Consensus 54 eLe~~~eEIq~Le~e 68 (504)
.|..++..|..|...
T Consensus 20 ~i~~Le~~Lk~l~~~ 34 (224)
T cd07623 20 QIENLDQQLRKLHAS 34 (224)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 430
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=96.06 E-value=0.11 Score=50.93 Aligned_cols=55 Identities=20% Similarity=0.260 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 173 LLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 227 (504)
Q Consensus 173 L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELe 227 (504)
+.++++.|+.|+++...+++..++....++++.+++.++.+.+..|.++|+.+++
T Consensus 156 ~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 156 LKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555555555555555555555555555555555555554
No 431
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=96.05 E-value=0.23 Score=51.20 Aligned_cols=41 Identities=15% Similarity=0.228 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHE 89 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqE 89 (504)
..++.+++.++.++..++.++..++..+..++.++..++.+
T Consensus 76 ~~~~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (334)
T TIGR00998 76 TNAELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIK 116 (334)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666655555555555444444444433333
No 432
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=96.04 E-value=2.2 Score=44.05 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 192 EYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 192 e~~kk~~~el~eqlqemek~L~sme~EiekLraELek 228 (504)
+.+++.+..|+.+++........--+.|+.+..+|..
T Consensus 193 e~qk~tv~~Leaev~~~K~~Y~~slrnLE~ISd~IHe 229 (426)
T KOG2008|consen 193 EQQKKTVDDLEAEVTLAKGEYKMSLRNLEMISDEIHE 229 (426)
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333333344555555555554
No 433
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.14 Score=47.43 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 191 YEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 191 Le~~kk~~~el~eqlqemek~L~sme~EiekLraELek 228 (504)
++.++++++++.+.+++|.++|..+.+.+..+..++..
T Consensus 96 ie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~ 133 (145)
T COG1730 96 IEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQ 133 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444443
No 434
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=96.00 E-value=1.8 Score=42.73 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010679 106 LQMRNLTEKIAKMEAELK 123 (504)
Q Consensus 106 ~eL~eL~eki~kLEaEL~ 123 (504)
.++.++.+++.+++..+.
T Consensus 83 ~~laev~eki~~l~~~~A 100 (218)
T cd07662 83 LKVSELFDKTRKIEARVA 100 (218)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345566666666666554
No 435
>COG5293 Predicted ATPase [General function prediction only]
Probab=96.00 E-value=1.1 Score=48.49 Aligned_cols=30 Identities=13% Similarity=0.077 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 010679 174 LSELESLRQEYHHCRGTYEYEKKFYNDHLE 203 (504)
Q Consensus 174 ~~EIeaLrqELq~LR~eLe~~kk~~~el~e 203 (504)
..++..|..|+-+++.+|..++..++.+.+
T Consensus 378 ~e~y~~l~ee~~~~~~elae~~~rie~l~k 407 (591)
T COG5293 378 FEKYQTLCEEIIALRGELAELEYRIEPLRK 407 (591)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhhHHHH
Confidence 345677778888888888888777776654
No 436
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=95.99 E-value=1.6 Score=44.29 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 197 FYNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 197 ~~~el~eqlqemek~L~sme~EiekLraELek 228 (504)
.+.++...+.+-.+=...|...+.++..++..
T Consensus 256 ~y~el~~~l~eG~~FY~~L~~~~~~l~~~~~~ 287 (296)
T PF13949_consen 256 AYKELSSNLEEGLKFYNDLLEILNKLQQKVED 287 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444455555555555554
No 437
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=95.99 E-value=0.0018 Score=70.58 Aligned_cols=26 Identities=12% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010679 72 LAATHGTLRQELAAAQHELQILHGQI 97 (504)
Q Consensus 72 Le~qi~~LkqELa~lqqEL~~L~~~L 97 (504)
.+++|..|+++|....+.|++.+.+|
T Consensus 374 YEqEI~~LkErL~~S~rkLeEyErrL 399 (495)
T PF12004_consen 374 YEQEIQSLKERLRMSHRKLEEYERRL 399 (495)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555544444444444444
No 438
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=95.97 E-value=0.18 Score=52.12 Aligned_cols=26 Identities=4% Similarity=0.111 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010679 205 LQVMEKNYITMATEVEKLRAELMNAP 230 (504)
Q Consensus 205 lqemek~L~sme~EiekLraELekle 230 (504)
+..++.++...+.++++++..++++.
T Consensus 180 ~~~~~~~l~~~~~~l~~a~~~l~~~~ 205 (331)
T PRK03598 180 IAQAKASLAQAQAALAQAELNLQDTE 205 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCE
Confidence 34445555555666667777776654
No 439
>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].
Probab=95.96 E-value=2 Score=43.45 Aligned_cols=48 Identities=13% Similarity=0.221 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQ 96 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~ 96 (504)
..|-..++....|.+.+...+.++...+.+-.+.+..--.||..+..+
T Consensus 93 sklsaavenak~e~~~id~~na~i~k~lAeeNqKIq~gi~EL~Kl~~e 140 (353)
T PF01540_consen 93 SKLSAAVENAKNEKKAIDDKNAQIDKKLAEENQKIQNGIEELKKLSNE 140 (353)
T ss_pred HHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHhHH
Confidence 444444555555555454444444444444444444333344443333
No 440
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=95.95 E-value=0.28 Score=50.77 Aligned_cols=54 Identities=15% Similarity=0.156 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679 176 ELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 231 (504)
Q Consensus 176 EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~ 231 (504)
+++..+.+++.++.+++..+..+..+.... ...++..++.+++.++.++++++.
T Consensus 146 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~l~~a~~ 199 (331)
T PRK03598 146 DLENARSSRDQAQATLKSAQDKLSQYREGN--RPQDIAQAKASLAQAQAALAQAEL 199 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443333332211 224556666777777777766543
No 441
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=95.95 E-value=0.28 Score=46.35 Aligned_cols=65 Identities=12% Similarity=0.136 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 010679 132 FQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKF 197 (504)
Q Consensus 132 LeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~ 197 (504)
+..|..++..+..+.+.|...+..++.+|..|..-+ .+++++.+|..|+.|+...+..|+..+..
T Consensus 81 l~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~L-t~eemQe~i~~L~kev~~~~erl~~~k~g 145 (201)
T KOG4603|consen 81 LQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSAL-TTEEMQEEIQELKKEVAGYRERLKNIKAG 145 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444444444443333222 13445555555555555555555554433
No 442
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=95.95 E-value=1.6 Score=41.52 Aligned_cols=7 Identities=29% Similarity=0.662 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 010679 112 TEKIAKM 118 (504)
Q Consensus 112 ~eki~kL 118 (504)
.+++.+|
T Consensus 81 A~eir~L 87 (213)
T PF00015_consen 81 ADEIRKL 87 (213)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 3333333
No 443
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=95.94 E-value=0.26 Score=50.19 Aligned_cols=83 Identities=16% Similarity=0.141 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhh------HHHHHHHHHH
Q 010679 127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGT------YEYEKKFYND 200 (504)
Q Consensus 127 ~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~e------Le~~kk~~~e 200 (504)
.+..+|..+..+...+..++.+++.+.+++...+...... |.++..||+.+++|+++--+. +...++.+..
T Consensus 270 ~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~---L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsK 346 (384)
T KOG0972|consen 270 SLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTET---LDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSK 346 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH---HHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHH
Confidence 3445555555555555555555555555544444433333 344556777777777764432 4445555555
Q ss_pred HHHHHHHHHHHH
Q 010679 201 HLESLQVMEKNY 212 (504)
Q Consensus 201 l~eqlqemek~L 212 (504)
|+++.+.|.-++
T Consensus 347 Lk~et~~mnv~i 358 (384)
T KOG0972|consen 347 LKEETQTMNVQI 358 (384)
T ss_pred HHHHHHhhhhhe
Confidence 555555554443
No 444
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=95.92 E-value=0.94 Score=48.41 Aligned_cols=7 Identities=14% Similarity=0.548 Sum_probs=3.3
Q ss_pred CCCChHH
Q 010679 44 MMPPPEV 50 (504)
Q Consensus 44 ~~p~~~~ 50 (504)
+.|+++.
T Consensus 13 lfp~e~S 19 (383)
T PF04100_consen 13 LFPDEQS 19 (383)
T ss_pred hCCChHH
Confidence 4455543
No 445
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=95.91 E-value=0.2 Score=44.39 Aligned_cols=37 Identities=22% Similarity=0.348 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 192 EYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 192 e~~kk~~~el~eqlqemek~L~sme~EiekLraELek 228 (504)
+.+++.++.+.+++.++++++..+..++++++..++.
T Consensus 90 ~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 90 EFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555666666666666666666666554
No 446
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=95.91 E-value=4.6 Score=46.68 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010679 139 AQNLVVAREELIAKVHQLTQDL 160 (504)
Q Consensus 139 LqeL~aerqeL~aqvq~L~~EL 160 (504)
+.++..++++|+.+++.++..|
T Consensus 672 ~eel~Ke~kElq~rL~~q~Kki 693 (988)
T KOG2072|consen 672 IEELEKERKELQSRLQYQEKKI 693 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 3444444455555544444444
No 447
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=95.89 E-value=2.2 Score=42.79 Aligned_cols=15 Identities=13% Similarity=0.091 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 010679 144 VAREELIAKVHQLTQ 158 (504)
Q Consensus 144 aerqeL~aqvq~L~~ 158 (504)
..+.++..=+..|+.
T Consensus 136 ~~Lke~~~Y~~slk~ 150 (240)
T cd07667 136 PVLREYILYSESMKN 150 (240)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 448
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=95.89 E-value=1.7 Score=43.10 Aligned_cols=48 Identities=19% Similarity=0.194 Sum_probs=32.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010679 183 EYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP 230 (504)
Q Consensus 183 ELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle 230 (504)
|...+|..+-.++..+-.+...++-.-+.-.+|-.|+.-|+.-++.+.
T Consensus 174 ek~alR~aLiEER~Rfc~Fvs~l~pVl~~e~~ml~E~~hl~~~~~~l~ 221 (231)
T cd07643 174 EKKAVRNALIEERGRFCTFVSFLKPVLDEEISMLGEVTHLQTIMEDLA 221 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334566666667777777777776666666677788877777776654
No 449
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.89 E-value=3.5 Score=45.43 Aligned_cols=38 Identities=26% Similarity=0.310 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAA 85 (504)
Q Consensus 48 ~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~ 85 (504)
...+.+.|..+...+.++...++++......|...+..
T Consensus 276 f~e~~~~i~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~ 313 (503)
T KOG2273|consen 276 FTEKKEKIDKLEQQLKKLSKQVQRLVKRRRELASNLAE 313 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777766666655555555444443
No 450
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=95.87 E-value=1.8 Score=41.50 Aligned_cols=52 Identities=6% Similarity=0.015 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 177 IeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELek 228 (504)
+..--..|+.|+.++-.+.....-.+..++.+|.+|..-+.+-.-+....+.
T Consensus 115 ~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEehqRKlvQdkAaq 166 (178)
T PF14073_consen 115 LQAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQEEEHQRKLVQDKAAQ 166 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333355566666666666666666667777777776655554444444433
No 451
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=95.86 E-value=0.35 Score=52.23 Aligned_cols=17 Identities=29% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010679 59 HVEMQKLATENQRLAAT 75 (504)
Q Consensus 59 ~eEIq~Le~e~qrLe~q 75 (504)
..||+.|..++.-|..-
T Consensus 150 ~~Ev~~LRreLavLRQl 166 (424)
T PF03915_consen 150 LKEVQSLRRELAVLRQL 166 (424)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555444444333
No 452
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=95.86 E-value=2.8 Score=47.23 Aligned_cols=7 Identities=0% Similarity=0.387 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 010679 50 VMEQKIA 56 (504)
Q Consensus 50 ~LEqeLe 56 (504)
.|.+++.
T Consensus 484 ~l~EQmS 490 (948)
T KOG0577|consen 484 ELREQMS 490 (948)
T ss_pred HHHHHHH
Confidence 3444444
No 453
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=95.83 E-value=2.2 Score=42.26 Aligned_cols=162 Identities=13% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 010679 58 QHVEMQKLATENQRLAATHGTLRQELA-AAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSK 136 (504)
Q Consensus 58 ~~eEIq~Le~e~qrLe~qi~~LkqELa-~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~LkaELeqLr 136 (504)
+..-...+..+..++...|..+.+.|. .+...|..+...+.......+..+..+.......... ++..+...+.+-
T Consensus 58 l~~a~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~---l~KaK~~Y~~~c 134 (236)
T cd07651 58 LKNSLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASSYTQKRKKIQSHMEKLLKKKQDQEKY---LEKAREKYEADC 134 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHH
Q 010679 137 TEAQNLVVAREELI-AKVHQLTQDLQRAHTDVQQIPALLSE-LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEK-NYI 213 (504)
Q Consensus 137 ~ELqeL~aerqeL~-aqvq~L~~ELq~l~~elqql~~L~~E-IeaLrqELq~LR~eLe~~kk~~~el~eqlqemek-~L~ 213 (504)
.++..++.+...+. .+++.++..+.+...++......... +..+..-......++...=..+.++++..-..-+ .|.
T Consensus 135 ~~~e~~~~~~~~~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~~~~~Q~lEe~Ri~~lk~~l~ 214 (236)
T cd07651 135 SKINSYTLQSQLTWGKELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWNREWKAALDDFQDLEEERIQFLKSNCW 214 (236)
T ss_pred HhHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 010679 214 TMATEVEKL 222 (504)
Q Consensus 214 sme~EiekL 222 (504)
....-|+..
T Consensus 215 ~~a~~~s~~ 223 (236)
T cd07651 215 TFANNISTL 223 (236)
T ss_pred HHHHHHHHH
No 454
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=95.81 E-value=2.2 Score=42.10 Aligned_cols=178 Identities=12% Similarity=0.114 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 010679 47 PPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHE-----LQILHGQIGGMKSERELQMRNLTEKIAKMEAE 121 (504)
Q Consensus 47 ~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqE-----L~~L~~~L~~l~ae~E~eL~eL~eki~kLEaE 121 (504)
....+.+=|..+..++..+..++.+|..++..|+++|...... +.........++.....+...+.+++.+++..
T Consensus 24 ~~eEVdeFLD~V~~dye~~l~e~~~l~~~i~~L~~~l~~~~~~~~s~~i~~a~~~a~~~~~~a~~ea~~il~~a~~~a~~ 103 (212)
T COG3599 24 DEEEVDEFLDDVIDDYEQLLDENEDLEDEIDELKEELKEAADAEDSQAIQQAETEAEELKQAAEAEADDILKRASAQAQR 103 (212)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Q 010679 122 LKTAEPVKLE-----FQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKK 196 (504)
Q Consensus 122 L~ele~LkaE-----LeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk 196 (504)
+-......++ . .+..++..++.+.+....++..+....-...........+....+....+++......+....
T Consensus 104 v~~~a~~~a~~~~~~a-~~~~e~e~~~~q~~~~~~rl~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (212)
T COG3599 104 VFGKAQYKADRYLEDA-KIAQELEDLKRQAQVERQRLRSDIEAQLASAKQEDWDEILRSTVDEVEAANEEAERLADAAQA 182 (212)
T ss_pred HHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHhhhhHHHHHHHHHHhhccccccc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679 197 FYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 231 (504)
Q Consensus 197 ~~~el~eqlqemek~L~sme~EiekLraELekle~ 231 (504)
..+.+. ..-+.....++..++.-|..+.+
T Consensus 183 ~~e~~~------~e~~~~~~~~l~e~e~~~s~t~~ 211 (212)
T COG3599 183 DADRLR------DECDIYVDTKLAELETRLSGTRR 211 (212)
T ss_pred chhhhh------hhhHHHHHHHHHHHHHHHhhhcc
No 455
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=95.80 E-value=0.16 Score=43.42 Aligned_cols=83 Identities=23% Similarity=0.301 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhh-------------------HHHHHHHHHHHHHHHHH
Q 010679 147 EELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGT-------------------YEYEKKFYNDHLESLQV 207 (504)
Q Consensus 147 qeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~e-------------------Le~~kk~~~el~eqlqe 207 (504)
+++..+++.|..++..+...+..+.....+++....||..+..+ ++.+++....+.+.+..
T Consensus 1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~ 80 (106)
T PF01920_consen 1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKK 80 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 010679 208 MEKNYITMATEVEKLRAELMNA 229 (504)
Q Consensus 208 mek~L~sme~EiekLraELekl 229 (504)
+++++..+..++++++.+|..+
T Consensus 81 l~~~~~~l~~~l~~~~~~l~~~ 102 (106)
T PF01920_consen 81 LEKQLKYLEKKLKELKKKLYEL 102 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 456
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=95.80 E-value=2 Score=41.53 Aligned_cols=156 Identities=13% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHH
Q 010679 66 ATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAE-PVKLEFQKSKTEAQNLVV 144 (504)
Q Consensus 66 e~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele-~LkaELeqLr~ELqeL~a 144 (504)
..+.-.|.+.++.+-++..+-..-|--+...| ...-+.+|-.++.--..|...+- .+..++..+-..+..+..
T Consensus 32 R~dVi~L~e~Ld~~L~~~~ar~~gIcpvr~~l------y~~~F~ELIRQVTi~C~ERGlLL~rvrde~~~~l~~y~~l~~ 105 (189)
T PF10211_consen 32 RQDVIQLQEWLDKMLQQRQARETGICPVREEL------YSQCFDELIRQVTIDCPERGLLLLRVRDEYRMTLDAYQTLYE 105 (189)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccccHHHHHH------HHHHHHHHHHHHHhCcHHHhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 010679 145 AREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYND-HLESLQVMEKNYITMATEVEKLR 223 (504)
Q Consensus 145 erqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~e-l~eqlqemek~L~sme~EiekLr 223 (504)
.......+........ ...-..++..+..+++.|+.++..++..++...+...+ .....+.+..+++.+.+..++|+
T Consensus 106 s~~~f~~rk~l~~e~~--~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~ 183 (189)
T PF10211_consen 106 SSIAFGMRKALQAEQG--KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLK 183 (189)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhc
Q 010679 224 AELMNA 229 (504)
Q Consensus 224 aELekl 229 (504)
.+|+.+
T Consensus 184 ~~l~~~ 189 (189)
T PF10211_consen 184 AQLEQI 189 (189)
T ss_pred HHHhcC
No 457
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=95.79 E-value=0.87 Score=41.22 Aligned_cols=120 Identities=17% Similarity=0.195 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 46 PPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTA 125 (504)
Q Consensus 46 p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~el 125 (504)
|.++.|-.+|..+.+--.....++.....-.++|+++|+.+..|..+|+..+.. ++.-++.|+-.....+.+....
T Consensus 6 P~iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnk----Kqe~l~iLqlhcqeke~eaqrq 81 (134)
T PF15233_consen 6 PQIEDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILNK----KQETLRILQLHCQEKESEAQRQ 81 (134)
T ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhh
Q ss_pred hHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 010679 126 EPV------KLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI 170 (504)
Q Consensus 126 e~L------kaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql 170 (504)
..+ +.+++..-.++......+=++-. -+.|..+|..+..-.+++
T Consensus 82 ~~~~~eck~R~~fe~qLE~lm~qHKdLwefh~-~erLa~EI~~l~~sKEQL 131 (134)
T PF15233_consen 82 QTLLQECKLRLDFEEQLEDLMGQHKDLWEFHM-PERLAREICALESSKEQL 131 (134)
T ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhhHHHH
No 458
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=95.78 E-value=0.36 Score=41.89 Aligned_cols=95 Identities=18% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 010679 108 MRNLTEKIAKMEAELKTAE---PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEY 184 (504)
Q Consensus 108 L~eL~eki~kLEaEL~ele---~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqEL 184 (504)
++-+.+..+.+.+.+.... ..-.+|..+-.+..++..++++|.++...+..+|..+.........+..+...++.++
T Consensus 4 ik~ir~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i 83 (108)
T PF02403_consen 4 IKLIRENPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEI 83 (108)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHH
Q ss_pred HHHHhhHHHHHHHHHHHH
Q 010679 185 HHCRGTYEYEKKFYNDHL 202 (504)
Q Consensus 185 q~LR~eLe~~kk~~~el~ 202 (504)
..++.++..+...+..+.
T Consensus 84 ~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 84 KELEEQLKELEEELNELL 101 (108)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
No 459
>PRK12705 hypothetical protein; Provisional
Probab=95.78 E-value=2.6 Score=46.68 Aligned_cols=160 Identities=14% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHH
Q 010679 55 IASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAE-PVKLEFQ 133 (504)
Q Consensus 55 Le~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele-~LkaELe 133 (504)
+-..-.+.+.+..+..++..+-+.--+.+. ++.+-..+.++...+.+.+.++++...++.+.+..+.+.+ .+..+.+
T Consensus 21 ~~~~~~~~~~~~~~a~~~~~~a~~~a~~~~--~~~~~~~~~~~~~~~~~~e~e~~~~~~~~~~~e~rl~~~e~~l~~~~~ 98 (508)
T PRK12705 21 LVVLLKKRQRLAKEAERILQEAQKEAEEKL--EAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAE 98 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 134 KSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYI 213 (504)
Q Consensus 134 qLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~ 213 (504)
.+...-.++..+.++|..+.+.|...+++...+++++..+..+ ++.+.=++.++.++..+... .+.+...++..+.+
T Consensus 99 ~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~Le~ia~lt~~-eak~~l~~~~~~~~~~e~~~--~i~~~e~~~~~~a~ 175 (508)
T PRK12705 99 KLDNLENQLEEREKALSARELELEELEKQLDNELYRVAGLTPE-QARKLLLKLLDAELEEEKAQ--RVKKIEEEADLEAE 175 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 010679 214 TMATEV 219 (504)
Q Consensus 214 sme~Ei 219 (504)
...++|
T Consensus 176 ~~A~~i 181 (508)
T PRK12705 176 RKAQNI 181 (508)
T ss_pred HHHHHH
No 460
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=95.77 E-value=0.51 Score=53.86 Aligned_cols=151 Identities=11% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 010679 58 QHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKT 137 (504)
Q Consensus 58 ~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~LkaELeqLr~ 137 (504)
.+.++..++.++.++.++...+..++..+.+++..+..++....+.++.++.++..++..|++.+.++..-+.+..-.+.
T Consensus 344 ~~q~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~~r~dW~laEa 423 (656)
T PRK06975 344 LNRKVDRLDQELVQRQQANDAQTAELRVKTEQAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDLSRNRDDWMIAEV 423 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHH
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHH
Q 010679 138 E-AQNLVVAREELIAKVHQLTQDLQRAHTDVQQI--PALLSELESLRQEYHHCRG----TYEYEKKFYNDHLESLQVM 208 (504)
Q Consensus 138 E-LqeL~aerqeL~aqvq~L~~ELq~l~~elqql--~~L~~EIeaLrqELq~LR~----eLe~~kk~~~el~eqlqem 208 (504)
| +..+-.++-.|...++....-|+.....+.++ +.+..-..++.++|+.|+. ++.-+--++..+.+++.++
T Consensus 424 e~Ll~lA~q~L~l~~dv~~A~~~L~~AD~~La~~~~P~l~~lR~Ala~Di~~L~~~~~~D~~gl~l~L~~l~~~vd~L 501 (656)
T PRK06975 424 EQMLSSASQQLQLTGNVQLALIALQNADARLATSDSPQAVAVRKAIAQDIERLKAAPSADLTGLAIKLDDAIAKIDAL 501 (656)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHhhC
No 461
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=95.76 E-value=1.9 Score=43.61 Aligned_cols=160 Identities=15% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 010679 63 QKLATENQRLAATHGTLRQELA-AAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQN 141 (504)
Q Consensus 63 q~Le~e~qrLe~qi~~LkqELa-~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~LkaELeqLr~ELqe 141 (504)
..+..+...+..+++.+-.+|. .+-..|..+..+++..+...-.....|+..+ +..+..++..+...+....+.+.
T Consensus 69 ~~~L~~~~~~a~q~e~~a~~l~~~v~~~l~~~~~~l~~~rk~~~~~~~klqk~l---~~~~~~leksKk~Y~~acke~E~ 145 (252)
T cd07675 69 YNILNELNDYAGQREVVAEEMGHRVYGELMRYSHDLKGERKMHLQEGRKAQQYL---DMCWKQMDNSKKKFERECREAEK 145 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q 010679 142 LVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKF-----YNDHLESLQVMEKNYITMA 216 (504)
Q Consensus 142 L~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~-----~~el~eqlqemek~L~sme 216 (504)
.+............-..++.+++..+ ..-..+.+..+.+....-+.+..++.. +.++.+.+|+|++.....-
T Consensus 146 A~~k~~ka~~d~~~tk~~~eK~k~~~---~~~~q~~e~aKn~Y~~~L~~~N~~q~k~Y~e~mP~vfd~lQ~leE~Ri~~l 222 (252)
T cd07675 146 AQQSYERLDNDTNATKSDVEKAKQQL---NLRTHMADESKNEYAAQLQNFNGEQHKHFYIVIPQIYKQLQEMDERRTVKL 222 (252)
T ss_pred HHHHHHhcccCcccCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHh
Q 010679 217 TEVEKLRAELMN 228 (504)
Q Consensus 217 ~EiekLraELek 228 (504)
.++-..-++|++
T Consensus 223 ~e~~~~~~~~E~ 234 (252)
T cd07675 223 SECYRGFADSER 234 (252)
T ss_pred HHHHHHHHHHHH
No 462
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=95.75 E-value=2.4 Score=42.99 Aligned_cols=152 Identities=16% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHH
Q 010679 73 AATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAE---PVKLEFQKSKTEAQNLVVAREEL 149 (504)
Q Consensus 73 e~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele---~LkaELeqLr~ELqeL~aerqeL 149 (504)
+.++...+..|...-+||...+.-..++-..--.-...|..++--.+.-...+. .|..--..++..|+.+..+.+.+
T Consensus 45 ~~~~~q~~~~i~~k~~e~r~~r~lat~l~~~g~~i~e~ls~~~~~~~~~~~aa~Rplel~e~Ekvlk~aIq~i~~~~q~~ 124 (338)
T KOG3647|consen 45 EDQRDQYRSLIGDKIEELRKARELATDLTQRGTTICEMLSKELLHKESLMSAAQRPLELLEVEKVLKSAIQAIQVRLQSS 124 (338)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 150 IAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 227 (504)
Q Consensus 150 ~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELe 227 (504)
.+++.....+...|..+ |+.-+.|++.+++.++.|..-.-....+++..+++++++-.....--+.+.-|+.+++
T Consensus 125 ~~~Lnnvasdea~L~~K---ierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~~Y~l~f~nl~yL~~qld 199 (338)
T KOG3647|consen 125 RAQLNNVASDEAALGSK---IERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQRYFLRFHNLDYLKSQLD 199 (338)
T ss_pred HHHHHHHhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
No 463
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.75 E-value=2.2 Score=48.58 Aligned_cols=179 Identities=15% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchH--------HHHHHHHHHHHHHHHHHHHHHH
Q 010679 53 QKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS--------ERELQMRNLTEKIAKMEAELKT 124 (504)
Q Consensus 53 qeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~a--------e~E~eL~eL~eki~kLEaEL~e 124 (504)
+.|+-..+.+..+..++.-|.- +..++++-+..++-++.++.-.+.+.. +.+..++.+..+..+++.+++.
T Consensus 242 ~DLe~A~e~V~~~K~Qi~~L~P-LV~~~~r~e~~~~S~~~~~A~k~aL~~~~~~iK~E~~~~~v~~~t~E~tQ~~~~ve~ 320 (1104)
T COG4913 242 QDLEGAYEQVEDIKRQIHTLDP-LVQLKNRREKAQQSKDHANALKKALPTVGNRIKKEEQETLVRQFTVEQTQAKSKVES 320 (1104)
T ss_pred HhHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hh----HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH--------HHHHHHHHHHHhhH
Q 010679 125 AE----PVKLEFQKSKTEAQNLV-VAREELIAKVHQLTQDLQRAHTDVQQIPALLSEL--------ESLRQEYHHCRGTY 191 (504)
Q Consensus 125 le----~LkaELeqLr~ELqeL~-aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EI--------eaLrqELq~LR~eL 191 (504)
++ ....+...++..+.++. .+...|.++++.++............+..|.+.| +.+-..-+..+...
T Consensus 321 ~~~e~~~A~~~~T~~~~~vk~~~G~~~~~LsA~~E~~~~~r~~~~~~~~~~~aLv~~l~~aAP~~A~~~L~~~~~~~~~~ 400 (1104)
T COG4913 321 AKIETDRAREMETLAHDNVKQIVGAQHGILSAKREGAVDKRRTISTARAGLDALVKGLGGAAPESAEELLELNNAARLTV 400 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCCcccHHHHHHHHHHHHHhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010679 192 EYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNV 232 (504)
Q Consensus 192 e~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~~ 232 (504)
+++...++.|....++-.+.+-....|...+-.||..|.+.
T Consensus 401 dE~~AA~E~L~~~~~~~~~~~~~A~d~~~a~~~El~SL~k~ 441 (1104)
T COG4913 401 DEYPAAREALESAGQRNVEDRTRAVDEFKAADQELSSLSKG 441 (1104)
T ss_pred hhhHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhcc
No 464
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.74 E-value=3.8 Score=44.33 Aligned_cols=181 Identities=12% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPV 128 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~L 128 (504)
..+.+.....+..|-.-..+.++...+..+-...-.. .+|.++++++...+.+......+...... .+-+.++..+
T Consensus 27 ~~~~~i~q~~q~~~l~~~ee~e~~~~~~~A~~~~~~k--kel~~~~~q~~~~k~~~~~~~~eqi~~~~--~~~q~e~~~~ 102 (438)
T COG4487 27 ARYKQIEQEDQSRILNTLEEFEKEANEKRAQYRSAKK--KELSQLEEQLINQKKEQKNLFNEQIKQFE--LALQDEIAKL 102 (438)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 010679 129 KLEFQKS---KTEAQNLVVAREELIAKVHQ-LTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLES 204 (504)
Q Consensus 129 kaELeqL---r~ELqeL~aerqeL~aqvq~-L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eq 204 (504)
...+..- ..++..+..++.++..+++. |+..++.++.+......+...--....+++.- |+.++.......++
T Consensus 103 ~~~~~~N~e~dke~~~le~~L~~~~~e~~~~lq~~~e~~~kkre~~k~~~~l~~~~ekK~e~s---Le~eR~k~~~ql~~ 179 (438)
T COG4487 103 EALELLNLEKDKELELLEKELDELSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKKLEES---LELEREKFEEQLHE 179 (438)
T ss_pred HHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Q 010679 205 LQVMEKNYITMATEVEKLRAELMNAPNVDRRAA 237 (504)
Q Consensus 205 lqemek~L~sme~EiekLraELekle~~~~~~~ 237 (504)
-. ..-+....+..++.+.++++++..+++|.+
T Consensus 180 ~~-~~~e~~e~~e~~~s~~~~~k~~k~~ae~~~ 211 (438)
T COG4487 180 AN-LDLEFKENEEQRESKWAILKKLKRRAELGS 211 (438)
T ss_pred hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 465
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=95.72 E-value=3.2 Score=43.43 Aligned_cols=180 Identities=14% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhc------cchHHHHHHHHHHHHHHHHHHHH
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHE-LQILHGQIG------GMKSERELQMRNLTEKIAKMEAE 121 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqE-L~~L~~~L~------~l~ae~E~eL~eL~eki~kLEaE 121 (504)
..|...+..+....+.+.....+|...+...+..++.++.+ +..+..... ....+++..+..|..++..|+..
T Consensus 112 ~~L~~d~~~L~~l~~~n~~~~~~L~~~I~ag~~~~~~l~~~~~~~~~~~~~~d~~~~q~~~~~~~~l~~leqRi~DL~~~ 191 (333)
T PF05816_consen 112 DELLRDNAMLDQLYEKNWEYYQELEKYIAAGELKLEELEAELLPALQADAEGDQMDAQELADLEQALFRLEQRIQDLQLS 191 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHH--HHHHHhhhhhhH
Q 010679 122 LKTAEPVKLEFQKSKTEAQNLVVAR---------------------------EELIAKVHQLTQDL--QRAHTDVQQIPA 172 (504)
Q Consensus 122 L~ele~LkaELeqLr~ELqeL~aer---------------------------qeL~aqvq~L~~EL--q~l~~elqql~~ 172 (504)
+.-...---.+.-++.--..|...+ .++...+...+.+| ...+.-.+...+
T Consensus 192 ~~va~Q~~pqir~iq~nN~~Li~ki~~a~~~TIP~~k~~~~ial~l~~Qk~a~~~~~av~~tTnell~~nAe~lk~~~~~ 271 (333)
T PF05816_consen 192 RQVAIQTAPQIRMIQNNNRELIEKIQSAITTTIPAWKNQLAIALALQRQKKALDAQQAVNDTTNELLRRNAEMLKQNSVE 271 (333)
T ss_pred HHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 173 LLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 173 L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELek 228 (504)
..++.+.---.++.|+...+.+-..+++...-.++...+......++.+++.++++
T Consensus 272 iak~~~~~~vdiEtL~~~~~~li~ti~e~~~i~~e~~~~r~~~~~~l~~l~~~lk~ 327 (333)
T PF05816_consen 272 IAKEAERPVVDIETLKKAFQNLIETIEETDQIQEEGREKRAQAEQELEQLEEELKQ 327 (333)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 466
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=95.72 E-value=4.4 Score=44.89 Aligned_cols=180 Identities=9% Similarity=0.030 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHH----
Q 010679 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK---- 123 (504)
Q Consensus 48 ~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~---- 123 (504)
.++|..+|..-+.-++--.....+|.+.++..-.+-....+.|+.....+.. .+..+..++.++..++.++.
T Consensus 101 l~~l~s~l~~~na~~~ga~~~~~~lS~~ledaL~aaq~~ad~l~q~~~~~~~----Aq~~l~~aq~~l~~lq~~a~~~~P 176 (593)
T PRK15374 101 LSQLESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDT----AKSVYDAAEKKLTQAQNKLQSLDP 176 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHHHHHHHHhhcCC
Q ss_pred ---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhhHHHHHH-----HHHHHHHHHHHhhHHHH
Q 010679 124 ---TAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDL-QRAHTDVQQIPALLSEL-----ESLRQEYHHCRGTYEYE 194 (504)
Q Consensus 124 ---ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~EL-q~l~~elqql~~L~~EI-----eaLrqELq~LR~eLe~~ 194 (504)
.+.+.+.++++...++.+...........+...+..- .+.+.....+...+..+ ..++++.++....+..+
T Consensus 177 ~sp~l~~a~~av~~a~~~a~~a~~~~~~~v~a~~~a~~~a~~ka~~~i~slt~~Q~~~~~~~~i~~~~~~~~~l~~~a~L 256 (593)
T PRK15374 177 ADPGYAQAEAAVEQAGKEATEAKEALDKATDATVKAGTDAKAKAEKADNILTKFQGTANAASQNQVSQGEQDNLSNVARL 256 (593)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccHHhhhhhhhhHHHHHHhhhhhhhhHHHH
Q ss_pred H------------------HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccc
Q 010679 195 K------------------KFYNDHLESLQVM-EKNYITMATEVEKLRAELMNAPN 231 (504)
Q Consensus 195 k------------------k~~~el~eqlqem-ek~L~sme~EiekLraELekle~ 231 (504)
. +...++.+++++. ++++++..+|.+...++.+.+.+
T Consensus 257 T~LmA~l~eLi~~~s~e~lk~~~el~~klsea~~kd~ekKA~Eyee~vrKAEE~qK 312 (593)
T PRK15374 257 TMLMAMFIEIVGKNTEESLQNDLALFNALQEGRQAEMEKKSAEFQEETRKAEETNR 312 (593)
T ss_pred HHHHHHHHHHHhhhhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 467
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=95.71 E-value=1.5 Score=47.90 Aligned_cols=153 Identities=16% Similarity=0.188 Sum_probs=0.0
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHH
Q 010679 43 DMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAEL 122 (504)
Q Consensus 43 ~~~p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL 122 (504)
+|.-+...+-..+..+.. +..+...+......+++....+.+++.++...+.........++..+.+.+.++..+.
T Consensus 32 ~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~eq~~~l~~~~~ql~~~~ 107 (448)
T COG1322 32 QMLGELAAVLEQLLLLLA----FRAEAEQLRTFARSLQALNLELIQELNELKARLQQQLLQSREQLQLLIESLAQLSSEF 107 (448)
T ss_pred hHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHh-HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 010679 123 KTAE-PVKLEFQKSKTEAQ--NLVVAREELIAKVHQLTQDLQR-AHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFY 198 (504)
Q Consensus 123 ~ele-~LkaELeqLr~ELq--eL~aerqeL~aqvq~L~~ELq~-l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~ 198 (504)
.++. .+..+..+...++. .+.....=+....+.+++.++. ..+..++...+..+|..+..+++.+-++...+++.+
T Consensus 108 ~~~~~~i~e~~~~~~~el~~~~~~~Ll~~~~~~~e~f~e~l~~~~~~s~~~~~~~~~~i~~~lg~~~~la~e~~~Lt~~L 187 (448)
T COG1322 108 QELANEIFEELNRRLAELNQQNLKQLLKPLREVLEKFREQLEQRIHESAEERSTLLEEIDRLLGEIQQLAQEAGNLTAAL 187 (448)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 010679 199 N 199 (504)
Q Consensus 199 ~ 199 (504)
.
T Consensus 188 k 188 (448)
T COG1322 188 K 188 (448)
T ss_pred c
No 468
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=95.71 E-value=0.54 Score=45.49 Aligned_cols=123 Identities=18% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH-----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 010679 108 MRNLTEKIAKM-----EAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQ 182 (504)
Q Consensus 108 L~eL~eki~kL-----EaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrq 182 (504)
...|.+++.++ ...+......-.+|+..=-++.-++..+.+|..-......-+...+.-.+++.+...+...+..
T Consensus 52 f~~l~e~v~~l~idd~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~ 131 (190)
T PF05266_consen 52 FANLAEKVKKLQIDDSRSSFESLMKTLSELEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELES 131 (190)
T ss_pred HHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010679 183 EYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP 230 (504)
Q Consensus 183 ELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle 230 (504)
++.+++..|..++.....+.+..++..+.+..+..+++++..++++++
T Consensus 132 ~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 132 EIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAE 179 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 469
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=95.71 E-value=0.017 Score=61.27 Aligned_cols=155 Identities=14% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 80 RQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQD 159 (504)
Q Consensus 80 kqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~E 159 (504)
++++.....-+..++.-......++..+.+....++...+.++.+. +..++..+....+....++.++...++.|..+
T Consensus 36 ~~~~~~~~~~~~~~E~~Kk~~~~qLrE~~et~~KE~~~~eKe~kE~--~~K~~~~~~e~~ek~~k~l~el~~~~~elkkE 113 (370)
T PF02994_consen 36 KQDSDLKSYLIMMLEDFKKDFKNQLREQDETPEKELKNKEKELKEN--IIKNLEVLKEEKEKSIKELNELKKRIKELKKE 113 (370)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccchHHHHHHHHhhhhhHHHHHHhhhhhhhhhhhhhhhhhHh--hhhhcccccchhhhhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 010679 160 LQRAHTDVQQIPALLSELESLRQEY-HHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRA 236 (504)
Q Consensus 160 Lq~l~~elqql~~L~~EIeaLrqEL-q~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~~~~~~ 236 (504)
+..++....++......+......+ ..+...++.+...+.++++.+.+++..+..+++++..+...|..++++.+|+
T Consensus 114 ie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRn 191 (370)
T PF02994_consen 114 IENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRN 191 (370)
T ss_dssp ----H-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCC
No 470
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=95.70 E-value=0.79 Score=48.22 Aligned_cols=168 Identities=10% Similarity=0.103 Sum_probs=0.0
Q ss_pred CCCChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHH
Q 010679 44 MMPPPEVMEQKIASQHV-EMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAEL 122 (504)
Q Consensus 44 ~~p~~~~LEqeLe~~~e-EIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL 122 (504)
++-++.+..+.-..... .|..+..+...--+++.++..+++.+.++..+++.+|+. ++..+..+.+.+.-.+.++
T Consensus 115 LlyPVs~~r~dq~~kp~~~~~~~~~~~~~~~q~lq~~~~~~er~~~~y~~~~qElq~----k~t~~~afn~tikife~q~ 190 (464)
T KOG4637|consen 115 LLYPVSRYRQDQNVKPDFNINAVGKKLREYHQQLQEKSLEYERLYEEYTRTSQELQM----KRTAIEAFNETIKIFEEQC 190 (464)
T ss_pred eechHHHhhhccccCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhHHHHHHHHH
Q ss_pred HHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 010679 123 KTAEPVKLEFQKSKTEA----QNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFY 198 (504)
Q Consensus 123 ~ele~LkaELeqLr~EL----qeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~ 198 (504)
...+.+.++-...-... -.-..++..+......++..|+++...+-++.+.++.+ ++.++.-.+.-..++
T Consensus 191 ~~~e~~~ka~~d~~~~eqG~qg~~e~~~~~~a~N~~~~ks~i~ei~~sl~~l~d~lk~~------~q~~~~~~enr~~e~ 264 (464)
T KOG4637|consen 191 GTQENLSKAYIDRFRREQGSQGNSEKEIGRIANNYDKLKSRIREIHDSLTRLEDDLKAL------IQALRSNSENRLCEL 264 (464)
T ss_pred HHHHHHHHHHHhHHHHHhccCCchHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHH------HHHHhhhhhhhhHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010679 199 NDHLESLQVMEKNYITMATEVEK 221 (504)
Q Consensus 199 ~el~eqlqemek~L~sme~Eiek 221 (504)
.++.+++.++...+..++....+
T Consensus 265 m~l~k~~nslkp~l~~lr~~~d~ 287 (464)
T KOG4637|consen 265 MELDKAMNSLKPDLIQLRKIRDQ 287 (464)
T ss_pred HHHHHHHhhcCchHHHHHHHHHH
No 471
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=95.69 E-value=1.9 Score=46.00 Aligned_cols=182 Identities=19% Similarity=0.190 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchH---HHHHHHHHHHHHHHHHHHHHHH
Q 010679 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS---ERELQMRNLTEKIAKMEAELKT 124 (504)
Q Consensus 48 ~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~a---e~E~eL~eL~eki~kLEaEL~e 124 (504)
+..|+++-+..++-|+.|..+..-|.+.++.-++|-++++.-..+|+........ +.+.+...|+....-||++|+-
T Consensus 127 ItSlKekt~~vnQHVq~LQseCsvlsEnLErrrQEaeELEgyCsqLk~nCrkVt~SVedaEiKtnvLkqnS~~LEekLr~ 206 (558)
T PF15358_consen 127 ITSLKEKTSRVNQHVQTLQSECSVLSENLERRRQEAEELEGYCSQLKENCRKVTRSVEDAEIKTNVLKQNSALLEEKLRY 206 (558)
T ss_pred hhhHHHhhHHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccchHHHHHHHHH
Q ss_pred Hh---------HHHHHHHHHHHH--------------------------------------------------------H
Q 010679 125 AE---------PVKLEFQKSKTE--------------------------------------------------------A 139 (504)
Q Consensus 125 le---------~LkaELeqLr~E--------------------------------------------------------L 139 (504)
+. ..+.|+++|+.. +
T Consensus 207 lq~qLqdE~prrqe~e~qELeqkleagls~~~l~p~~~~~g~~~p~~s~~~p~~~~~l~~~~~~~~~rage~~~~seq~l 286 (558)
T PF15358_consen 207 LQQQLQDETPRRQEAEWQELEQKLEAGLSRSGLPPTADSTGCPGPPGSPEEPPRPRNLAPAGWGGGPRAGEGPELSEQEL 286 (558)
T ss_pred HHHHhcccCcchhhhhHHHHHHHHhhhhhhcCCCccccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCccccHHhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 140 QNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSE----LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITM 215 (504)
Q Consensus 140 qeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~E----IeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sm 215 (504)
+++-.-+.+|..+|..|...-.+.+-..+++-.|... ++.+-.+-++.+.+-......+.+|..+..++-.-.+.-
T Consensus 287 qk~~s~LEelRrevssLtarw~qEega~qEaLrlLgglggRldgflgqWERaQ~eq~q~ar~lqeLR~~~delct~vers 366 (558)
T PF15358_consen 287 QKVSSGLEELRREVSSLTARWHQEEGAVQEALRLLGGLGGRLDGFLGQWERAQREQAQTARGLQELRGRADELCTMVERS 366 (558)
T ss_pred cccCccHHHHHHHHHHHhhHHHHHHhHHHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHhc
Q 010679 216 ATEVEKLRAELMNA 229 (504)
Q Consensus 216 e~EiekLraELekl 229 (504)
.--+.+|+.+|+.+
T Consensus 367 avs~asLrseLegl 380 (558)
T PF15358_consen 367 AVSVASLRSELEGL 380 (558)
T ss_pred HhHHHHHHHHhhcc
No 472
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=95.69 E-value=0.93 Score=38.76 Aligned_cols=110 Identities=13% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Q 010679 119 EAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLT--QDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKK 196 (504)
Q Consensus 119 EaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~--~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk 196 (504)
+.....+..+..++......|..|...+.++...+.... ..+..+..-..-+..+...|..++.++..++.+++..+.
T Consensus 1 d~a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~ 80 (123)
T PF02050_consen 1 DQAEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQARE 80 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 197 FYNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 197 ~~~el~eqlqemek~L~sme~EiekLraELek 228 (504)
.+.+...+.+.+++-.+....+........+.
T Consensus 81 ~l~~a~~~~k~~e~L~e~~~~~~~~~~~r~Eq 112 (123)
T PF02050_consen 81 ELQEARRERKKLEKLKERRREEYQQEEERREQ 112 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 473
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=95.69 E-value=1.5 Score=42.43 Aligned_cols=126 Identities=16% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 83 LAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR 162 (504)
Q Consensus 83 La~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~ 162 (504)
|...+.-++.|+.++.+.....+.+...|...-..++.-.......+.++..|+.-++..+..+.....-.+....+|..
T Consensus 62 L~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~e 141 (188)
T PF05335_consen 62 LAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAE 141 (188)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 010679 163 AHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKN 211 (504)
Q Consensus 163 l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~ 211 (504)
...- |...+..++.|...|...|.+++..++.....-..-.+...+
T Consensus 142 K~qL---LeaAk~Rve~L~~QL~~Ar~D~~~tk~aA~kA~~AA~eAkq~ 187 (188)
T PF05335_consen 142 KTQL---LEAAKRRVEELQRQLQAARADYEKTKKAAYKAACAAQEAKQK 187 (188)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 474
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=95.68 E-value=0.13 Score=50.48 Aligned_cols=96 Identities=13% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 135 SKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYIT 214 (504)
Q Consensus 135 Lr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~s 214 (504)
+-..+-.+..++..++.. ++++.+...++..+.....+..+.+.++++++.++.+++...+.++...++..++.++.+.
T Consensus 112 vI~R~~~ll~~l~~l~~~-~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~ 190 (216)
T KOG1962|consen 112 VIRRLHTLLRELATLRAN-EKAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEG 190 (216)
T ss_pred HHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhccc
Q 010679 215 MATEVEKLRAELMNAPN 231 (504)
Q Consensus 215 me~EiekLraELekle~ 231 (504)
+..|.++|-+|-+++++
T Consensus 191 ~~~EydrLlee~~~Lq~ 207 (216)
T KOG1962|consen 191 LQDEYDRLLEEYSKLQE 207 (216)
T ss_pred cccHHHHHHHHHHHHHH
No 475
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=95.67 E-value=0.089 Score=49.13 Aligned_cols=147 Identities=15% Similarity=0.140 Sum_probs=0.0
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 010679 39 FPPFDMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKM 118 (504)
Q Consensus 39 ~~~~~~~p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kL 118 (504)
|.=+..+|......-.++.+......|+..+.-...++..|+.++......+++....|..++...+...+++.++..++
T Consensus 6 l~~~~~Pp~~~~~~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~ 85 (160)
T PF13094_consen 6 LARLPFPPQKREDSFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKA 85 (160)
T ss_pred CCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q ss_pred HHHHHHHhHHHHHHHHHHHHHH-------HHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 010679 119 EAELKTAEPVKLEFQKSKTEAQ-------NLVVA-REELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYH 185 (504)
Q Consensus 119 EaEL~ele~LkaELeqLr~ELq-------eL~ae-rqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq 185 (504)
...+........+...+..... ..... -.++..-+.+|...|..++...+++..+...|+.++..|+
T Consensus 86 ~~vL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~el~~l~~ql~~hl~s~~~n~~~l~~~~~~ie~~~~~Ld 160 (160)
T PF13094_consen 86 HPVLQLDDSGVLELPELPQKSLLEASESRFAPTLCDEELLPLLKQLNKHLESMQNNLQQLKGLLEAIERSYAALD 160 (160)
T ss_pred chhhccccccccccccccccccccccccccCcccchHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcC
No 476
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=95.66 E-value=4 Score=44.12 Aligned_cols=182 Identities=13% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchH---HHHHHHHHHHHHHHHHHHHHHHH
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS---ERELQMRNLTEKIAKMEAELKTA 125 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~a---e~E~eL~eL~eki~kLEaEL~el 125 (504)
+.|.-+|+..+.-..+++.++..-..--++|+.-|..+-.=-.++-.+-.+++. ++-..-+.+++-|..++....+.
T Consensus 298 eeLR~dle~~r~~aek~~~EL~~Ek~c~eEL~~al~~A~~GhaR~lEqYadLqEk~~~Ll~~Hr~i~egI~dVKkaAakA 377 (488)
T PF06548_consen 298 EELRVDLESSRSLAEKLEMELDSEKKCTEELDDALQRAMEGHARMLEQYADLQEKHNDLLARHRRIMEGIEDVKKAAAKA 377 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 010679 126 EPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESL 205 (504)
Q Consensus 126 e~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eql 205 (504)
-.--.+..-...-..++...+.+-+.++..|+.+-..|+..+..-.+..+---+|--.|.+++......++.....++..
T Consensus 378 g~kG~~~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~ 457 (488)
T PF06548_consen 378 GVKGAESRFINSLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAMDAEQEN 457 (488)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHhcc
Q 010679 206 QVMEKNYITMAT----EVEKLRAELMNAP 230 (504)
Q Consensus 206 qemek~L~sme~----EiekLraELekle 230 (504)
..+.++++.|.+ ||..|+.-|+..+
T Consensus 458 ek~~kqiekLK~kh~~Ei~t~kq~laes~ 486 (488)
T PF06548_consen 458 EKAKKQIEKLKRKHKMEISTMKQYLAESR 486 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 477
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.81 Score=40.30 Aligned_cols=108 Identities=14% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH-----HHHHHHHHHHHHhhHHHH
Q 010679 120 AELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSE-----LESLRQEYHHCRGTYEYE 194 (504)
Q Consensus 120 aEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~E-----IeaLrqELq~LR~eLe~~ 194 (504)
+..++++.+-..+..|+.++.+....++.|+.++++-+..+..+..-......-+-- -.++.+-....+..|++.
T Consensus 2 ~~~~kmee~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~nV~kRlefI 81 (120)
T KOG3478|consen 2 ALQKKMEEEANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVLVKQELEEARTNVGKRLEFI 81 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchhhHHHHHHHHhhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 195 KKFYNDHLESLQVMEKNYITMATEVEKLRAELM 227 (504)
Q Consensus 195 kk~~~el~eqlqemek~L~sme~EiekLraELe 227 (504)
.+++..++.++.++++++..++..+.+++....
T Consensus 82 ~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~q 114 (120)
T KOG3478|consen 82 SKEIKRLENQIRDSQEEFEKQREAVIKLQQAAQ 114 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 478
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.63 E-value=3.1 Score=42.50 Aligned_cols=185 Identities=13% Similarity=0.107 Sum_probs=0.0
Q ss_pred CCCCCChHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch
Q 010679 42 FDMMPPPEVMEQKIASQHVEMQ--------------------KLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMK 101 (504)
Q Consensus 42 ~~~~p~~~~LEqeLe~~~eEIq--------------------~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ 101 (504)
.+-......+.++|......|. .|...+++......++.+++...-.++..+.. ....
T Consensus 13 ~~~~~~~~~l~~~i~~~i~~i~~~~~~l~r~~~~lgt~~ds~~lr~kl~~~~~~~~~~vkdt~~~lke~~~~~~--~~~~ 90 (269)
T KOG0811|consen 13 QEEPFDFQQLAQEIAANIQRINQQVLSLLRFLNSLGTKSDSPELRDKLHQERLNANQLVKDTSALLKEIDTLRL--ESDL 90 (269)
T ss_pred cCCCCcHhHHHHHHHHHHHHHhHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 010679 102 SERELQMRNLTEKIAKMEAELKTAEPVKLEFQ---------KSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPA 172 (504)
Q Consensus 102 ae~E~eL~eL~eki~kLEaEL~ele~LkaELe---------qLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~ 172 (504)
..+..+++.|.+.....-++...+...-.+.+ ..-.++..-.....++.........+++....+.+.+..
T Consensus 91 ~~~k~~~~kL~~ef~~~l~efq~vQrk~ae~ek~~~~a~~s~~s~~~~~~~~~~~~~~~~~~~~~~q~e~~~q~~e~~~~ 170 (269)
T KOG0811|consen 91 RQLKIQLDKLVDEFSAALKEFQKVQRKSAEREKIPMVARGSQNSQQLDEESPRVDELSNNGSQSQQQLEEQAQDNEILEY 170 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcccccccccccchhhhhhhhhhhhhhccchhhhhHHHHHHhhhhhhhh
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 173 LLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 173 L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELek 228 (504)
....|++-.++++.++++|-.++.-..+|-.-+.+-...+++++..|+.+..-++.
T Consensus 171 ~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveq 226 (269)
T KOG0811|consen 171 QLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQ 226 (269)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHH
No 479
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=95.59 E-value=2.5 Score=48.50 Aligned_cols=168 Identities=13% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHH-----------
Q 010679 55 IASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK----------- 123 (504)
Q Consensus 55 Le~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~----------- 123 (504)
+..+.+++..++. ++...+..+|..++.+-+=-+-.+..|.. ++.+|+++...+-+|+++.-
T Consensus 93 ~~dl~e~vsqm~~---~vK~~L~~vK~qveiAmE~~EL~~~vlg~----l~~EIe~~~~~vfemeE~R~~Sp~~~~lp~~ 165 (683)
T PF08580_consen 93 LFDLIEEVSQMEL---DVKKTLISVKKQVEIAMEWEELWNDVLGD----LDNEIEECIRLVFEMEEKRHSSPVRHGLPIF 165 (683)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHccCCcccCCCcc
Q ss_pred HHhHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 010679 124 TAEPVKLEF--------------------QKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQE 183 (504)
Q Consensus 124 ele~LkaEL--------------------eqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqE 183 (504)
+|+.+-.++ +.+..++-+|.+.++=|++-++-|=..|+..+... ..-.-.-.+.|...
T Consensus 166 ~Le~Ive~~~~~~~~~~~~~~lPtF~~~Desl~~~ll~L~arm~PLraSLdfLP~Ri~~F~~ra--~~~fp~a~e~L~~r 243 (683)
T PF08580_consen 166 ELETIVEEMPSSTNSSNKRFSLPTFSPQDESLYSSLLALFARMQPLRASLDFLPMRIEEFQSRA--ESIFPSACEELEDR 243 (683)
T ss_pred cHHHHHHhccccCCCCcCCcCCCCCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHH
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhccc
Q 010679 184 YHHCRGTYEYEKKFYNDHLESLQVMEKNYI------TMATEVEKLRAELMNAPN 231 (504)
Q Consensus 184 Lq~LR~eLe~~kk~~~el~eqlqemek~L~------sme~EiekLraELekle~ 231 (504)
.+.|....+.++++++.|++++-+-.+++. ++.+.++.+++.|.++..
T Consensus 244 ~~~L~~k~~~L~~e~~~LK~ELiedRW~~vFr~l~~q~~~m~esver~~~kl~~ 297 (683)
T PF08580_consen 244 YERLEKKWKKLEKEAESLKKELIEDRWNIVFRNLGRQAQKMCESVERSLSKLQE 297 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 480
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=95.59 E-value=0.032 Score=59.21 Aligned_cols=131 Identities=17% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 76 HGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQ 155 (504)
Q Consensus 76 i~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~ 155 (504)
...|++......+|+.....++ .+..++.+.......+.-++.+..+...+++++.++..+.....+...++..
T Consensus 57 ~~qLrE~~et~~KE~~~~eKe~------kE~~~K~~~~~~e~~ek~~k~l~el~~~~~elkkEie~IKk~q~e~~~~i~~ 130 (370)
T PF02994_consen 57 KNQLREQDETPEKELKNKEKEL------KENIIKNLEVLKEEKEKSIKELNELKKRIKELKKEIENIKKNQSEMKLEIEN 130 (370)
T ss_dssp -------------------------------------------------------------------H------------
T ss_pred HHHHHHhhhhhhhhhhhhhhhh------hHhhhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q ss_pred HHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 010679 156 LTQDLQRA-HTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNY 212 (504)
Q Consensus 156 L~~ELq~l-~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L 212 (504)
+...+..+ ..-..++.++...|..+...++++.+.++.+.+.+..+.+.+.+++...
T Consensus 131 ~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrs 188 (370)
T PF02994_consen 131 LKKKLENIDESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRS 188 (370)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc
No 481
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=95.58 E-value=1.2 Score=41.28 Aligned_cols=116 Identities=16% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhHHHHHHHHHHHHHHHHHhh
Q 010679 112 TEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT-DVQQIPALLSELESLRQEYHHCRGT 190 (504)
Q Consensus 112 ~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~-elqql~~L~~EIeaLrqELq~LR~e 190 (504)
...+..+.+.-.+++..+.++ +..++.....+.+-..++..+..+|..+.. -.+.+..++..|+.+..||.-|...
T Consensus 30 ~sals~f~AkEeeIErkKmeV---rekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~ 106 (159)
T PF04949_consen 30 RSALSAFRAKEEEIERKKMEV---REKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQS 106 (159)
T ss_pred HHHHHHHHhHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010679 191 YEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP 230 (504)
Q Consensus 191 Le~~kk~~~el~eqlqemek~L~sme~EiekLraELekle 230 (504)
++...+.+.+..+.+.+..+.-..+...|..|-.+-+.++
T Consensus 107 cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~eSE~~r 146 (159)
T PF04949_consen 107 CQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSESERLR 146 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 482
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=95.56 E-value=1.1 Score=39.74 Aligned_cols=106 Identities=13% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHH
Q 010679 124 TAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSE-LESLRQEYHHCRGTYEYEKKFYNDHL 202 (504)
Q Consensus 124 ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~E-IeaLrqELq~LR~eLe~~kk~~~el~ 202 (504)
.+-..+.++..+...|.....+...+...+..-..+|......++.-...... |........++....+...+......
T Consensus 1 ~li~kkre~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~ 80 (126)
T PF13863_consen 1 ELIEKKREMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKE 80 (126)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010679 203 ESLQVMEKNYITMATEVEKLRAELMNA 229 (504)
Q Consensus 203 eqlqemek~L~sme~EiekLraELekl 229 (504)
..+..+...+..|..++.++...|..+
T Consensus 81 ~ei~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 81 AEIKKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 483
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=95.55 E-value=2.9 Score=42.08 Aligned_cols=174 Identities=14% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH------------------HHHHHHHHHHHHhhhccch
Q 010679 49 EVMEQKIASQHVEMQKLAT---------ENQRLAATHGTLRQE------------------LAAAQHELQILHGQIGGMK 101 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~---------e~qrLe~qi~~LkqE------------------La~lqqEL~~L~~~L~~l~ 101 (504)
..||.+++..+.-++.+.. ...+.+..+..+-.. +..+-.........|..++
T Consensus 18 ~~lE~~~d~~k~~~~~~~k~~~~~lq~n~~~~~ekr~rk~p~~~Lg~~M~~~g~~l~~~s~lg~~L~~~g~a~~~ia~~~ 97 (244)
T cd07595 18 LQIEKRVEAVKDACQNIHKKLISCLQGQSGEDKDKRLKKLPEYGLAQSMLESSKELPDDSLLGKVLKLCGEAQNTLAREL 97 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhcCCCcHHHHhhhhccCcHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhhhhh
Q 010679 102 SERELQMRN--LTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELI---------AKVHQLTQDLQRAHTDVQQI 170 (504)
Q Consensus 102 ae~E~eL~e--L~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~---------aqvq~L~~ELq~l~~elqql 170 (504)
.+.+..+.. |.---.-++.++..+...+..|+..+-++...+...+... .++..|+.++..++.+..+.
T Consensus 98 ~~~d~~i~~~fl~pL~~~le~dik~i~k~RKkLe~~RLd~D~~k~r~~ka~k~~~~~~~~~K~~~l~eE~e~ae~k~e~~ 177 (244)
T cd07595 98 VDHEMNVEEDVLSPLQNILEVEIPNIQKQKKRLSKLVLDMDSARSRYNAAHKSSGGQGAAAKVDALKDEYEEAELKLEQC 177 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccccccccccccchHHHHHHHHHHHHHHH
Q ss_pred hHHHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 171 PALLSE--LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKL 222 (504)
Q Consensus 171 ~~L~~E--IeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekL 222 (504)
.++... .+-+..|.+-++.-++..+.+++..+..++.|++-+..|+..+...
T Consensus 178 ~e~~~~~M~~~l~~E~e~~~~l~~lv~aQl~YH~~a~e~L~~l~~~l~~~~~~~ 231 (244)
T cd07595 178 RDALATDMYEFLAKEAEIASYLIDLIEAQREYHRTALSVLEAVLPELQEQIEQS 231 (244)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 484
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=95.55 E-value=0.1 Score=57.78 Aligned_cols=93 Identities=12% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH--------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 010679 137 TEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSEL--------ESLRQEYHHCRGTYEYEKKFYNDHLESLQVM 208 (504)
Q Consensus 137 ~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EI--------eaLrqELq~LR~eLe~~kk~~~el~eqlqem 208 (504)
.++.+|+.++.+|+.++..+..++..++..+.-|..+.... ......+.++.+.++...+++.++..++.++
T Consensus 71 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (525)
T TIGR02231 71 ERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREA 150 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 010679 209 EKNYITMATEVEKLRAELMNA 229 (504)
Q Consensus 209 ek~L~sme~EiekLraELekl 229 (504)
+.++..++++|++|+.+|.++
T Consensus 151 ~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 151 ERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
No 485
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=95.55 E-value=1.3 Score=50.35 Aligned_cols=163 Identities=12% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 010679 50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVK 129 (504)
Q Consensus 50 ~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~Lk 129 (504)
.+++-+..+++-...+......+..+++.|-..|..-.-.-..++.+.+.+....+.-+..|..+-.+..+|++.+....
T Consensus 851 k~~ei~s~lke~r~e~~~~~~~~~~~id~lv~~IK~~~~tq~~~~~~~d~~~~~~e~~~~~l~sk~~q~~~e~er~rk~q 930 (1259)
T KOG0163|consen 851 KTIEILSRLKEGREEIISGANSTYRQIDDLVKKIKMPRITQREMNSEYDVAVKNYEKLVKRLDSKEQQQIEELERLRKIQ 930 (1259)
T ss_pred HHHHHHHHHhcchHHHHhhhhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHH
Q 010679 130 LEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYH-HCRGTYEYEKKFYNDHLESLQVM 208 (504)
Q Consensus 130 aELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq-~LR~eLe~~kk~~~el~eqlqem 208 (504)
..++.-+...+.-..++.+.+.+...-.+...+.+.+.++-.....+-..+..|++ +|..+.+.+-+....++++..+.
T Consensus 931 E~~E~ER~rrEaeek~rre~ee~k~~k~e~e~kRK~eEeqr~~qee~e~~l~~e~q~qla~e~eee~k~q~~~Eqer~D~ 1010 (1259)
T KOG0163|consen 931 ELAEAERKRREAEEKRRREEEEKKRAKAEMETKRKAEEEQRKAQEEEERRLALELQEQLAKEAEEEAKRQNQLEQERRDH 1010 (1259)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q ss_pred HHHH
Q 010679 209 EKNY 212 (504)
Q Consensus 209 ek~L 212 (504)
+-.+
T Consensus 1011 ~la~ 1014 (1259)
T KOG0163|consen 1011 ELAL 1014 (1259)
T ss_pred HHHH
No 486
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=95.54 E-value=2.2 Score=48.50 Aligned_cols=167 Identities=16% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 010679 62 MQKLATENQRLAATHGTLRQELAAAQHELQILHG---QIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTE 138 (504)
Q Consensus 62 Iq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~---~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~LkaELeqLr~E 138 (504)
++.|+.--.+.+.+|..+-..|+ ...+.+.++. .+......+.....-|++.-.....-+.+...+.++...+..+
T Consensus 255 L~AL~~la~~~~~~i~~~~~~id-~~~D~e~lr~~l~d~s~~~~~lpsv~~Llqe~~a~v~q~~~e~~~l~~eaq~l~~~ 333 (632)
T PF14817_consen 255 LQALEHLASRRKAEIRSETESID-VRADAEYLRNQLEDVSDESQALPSVHQLLQEQWAHVQQFLAEEDALNKEAQALSQR 333 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc-chhhHHHhhhccCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH------------HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 010679 139 AQNLVVAREE------------LIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQ 206 (504)
Q Consensus 139 LqeL~aerqe------------L~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlq 206 (504)
+..+..++.. ++.++-.+...++.|..+.+++..+..+-..+..+|+...++|.+.+....+.+++++
T Consensus 334 L~~~~~e~~~~~~~~s~~~al~~ele~~~l~A~l~~L~se~q~L~~~~~~r~e~~~~Lq~K~q~I~~frqlv~e~QeqIr 413 (632)
T PF14817_consen 334 LQRLLEEIERRLSGSSEREALALELEVAGLKASLNALRSECQRLKEAAAERQEALRSLQAKWQRILDFRQLVSEKQEQIR 413 (632)
T ss_pred HHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 010679 207 VMEKNYITMATEVEKLRAELMNA 229 (504)
Q Consensus 207 emek~L~sme~EiekLraELekl 229 (504)
.+.+.-......+.+...|+..+
T Consensus 414 ~LiK~Nsaakt~L~q~~~E~~~~ 436 (632)
T PF14817_consen 414 ALIKGNSAAKTQLEQSPAEAQEF 436 (632)
T ss_pred HHHHhhHHHHHHHHhChHHHHHH
No 487
>PRK12705 hypothetical protein; Provisional
Probab=95.52 E-value=2.6 Score=46.72 Aligned_cols=162 Identities=11% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 010679 50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVK 129 (504)
Q Consensus 50 ~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~Lk 129 (504)
..++-+...+.+.+.+. .+.+.+.++++...+.+++ .++...+.+.+..-..|..+...|+.....++..+
T Consensus 34 ~a~~~~~~a~~~a~~~~------~~~~~~~~~~~~~~~~~~e---~e~~~~~~~~~~~e~rl~~~e~~l~~~~~~l~~~~ 104 (508)
T PRK12705 34 EAERILQEAQKEAEEKL------EAALLEAKELLLRERNQQR---QEARREREELQREEERLVQKEEQLDARAEKLDNLE 104 (508)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 010679 130 LEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVME 209 (504)
Q Consensus 130 aELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqeme 209 (504)
.+|++.+.+|.....++.++..+.....+++..+..+..+-.-+..--+.++.|...+-.+++..-+. ...++...-+.
T Consensus 105 ~~l~~~~~~l~~~~~~~~~~~~~~~~~Le~ia~lt~~eak~~l~~~~~~~~~~e~~~~i~~~e~~~~~-~a~~~A~~ii~ 183 (508)
T PRK12705 105 NQLEEREKALSARELELEELEKQLDNELYRVAGLTPEQARKLLLKLLDAELEEEKAQRVKKIEEEADL-EAERKAQNILA 183 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH
Q 010679 210 KNYITMATEVEK 221 (504)
Q Consensus 210 k~L~sme~Eiek 221 (504)
..++....+...
T Consensus 184 ~aiqr~a~~~~~ 195 (508)
T PRK12705 184 QAMQRIASETAS 195 (508)
T ss_pred HHHHHhccchhh
No 488
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.51 E-value=2.5 Score=43.13 Aligned_cols=171 Identities=14% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHh---
Q 010679 50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAE--- 126 (504)
Q Consensus 50 ~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele--- 126 (504)
.+.++|...+..+..+..+...+..++..+.. ..++..++..++. +..+......+..++.....+.+
T Consensus 55 ~lr~kl~~~~~~~~~~vkdt~~~lke~~~~~~-----~~~~~~~k~~~~k----L~~ef~~~l~efq~vQrk~ae~ek~~ 125 (269)
T KOG0811|consen 55 ELRDKLHQERLNANQLVKDTSALLKEIDTLRL-----ESDLRQLKIQLDK----LVDEFSAALKEFQKVQRKSAEREKIP 125 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----hhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhHHhhccc
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 010679 127 ------PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYND 200 (504)
Q Consensus 127 ------~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~e 200 (504)
....++.+-..+.............+++.-......+..++..+++-..+|..|+..|.++-+-++.+-.-..+
T Consensus 126 ~~a~~s~~s~~~~~~~~~~~~~~~~~~~~~~q~e~~~q~~e~~~~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~e 205 (269)
T KOG0811|consen 126 MVARGSQNSQQLDEESPRVDELSNNGSQSQQQLEEQAQDNEILEYQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHE 205 (269)
T ss_pred ccccccccchhhhhhhhhhhhhhccchhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010679 201 HLESLQVMEKNYITMATEVEKLRAELMNA 229 (504)
Q Consensus 201 l~eqlqemek~L~sme~EiekLraELekl 229 (504)
.-+.+..++.+++.....++....+|.++
T Consensus 206 QG~~VDsIe~nve~a~~nveqg~~~L~kA 234 (269)
T KOG0811|consen 206 QGELVDSIEANVENASVNVEQGTENLRKA 234 (269)
T ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHH
No 489
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=95.50 E-value=1.7 Score=39.87 Aligned_cols=139 Identities=14% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhccc--hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 81 QELAAAQHELQILHGQIGGM--KSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQ 158 (504)
Q Consensus 81 qELa~lqqEL~~L~~~L~~l--~ae~E~eL~eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ 158 (504)
.+|..+-..-..+..-+..+ ..++...+..+......+... ...++.+|+.++.++.....+...|..+...+..
T Consensus 7 ~eL~~Ll~d~~~l~~~v~~l~~~~~~~~~~~~l~~~n~~lAe~---nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~ 83 (150)
T PF07200_consen 7 EELQELLSDEEKLDAFVKSLPQVQELQQEREELLAENEELAEQ---NLSLEPELEELRSQLQELYEELKELESEYQEKEQ 83 (150)
T ss_dssp HHHHHHHHH-HHHHHHGGGGS--HHHHHHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH---hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhh---hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 159 DLQRAHTDVQQ---IPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKL 222 (504)
Q Consensus 159 ELq~l~~elqq---l~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekL 222 (504)
++..+...... +..|+..+..+..+.+.+-..+-.-.-.+....++..+..+....-....++|
T Consensus 84 ~~~~l~~~~s~~~l~~~L~~~~~e~eeeSe~lae~fl~g~~d~~~Fl~~f~~~R~~yH~R~~K~EkL 150 (150)
T PF07200_consen 84 QQDELSSNYSPDALLARLQAAASEAEEESEELAEEFLDGEIDVDDFLKQFKEKRKLYHLRRAKEEKL 150 (150)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC-S-SSSHHHHHHHHHHHHHHHHHHHHHH---HHH
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhccC
No 490
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=95.50 E-value=3 Score=41.45 Aligned_cols=161 Identities=17% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 010679 62 MQKLATENQRLAATHGTLRQELA-AAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQ 140 (504)
Q Consensus 62 Iq~Le~e~qrLe~qi~~LkqELa-~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~LkaELeqLr~ELq 140 (504)
...+..+...+...|..+-+.|. .+-..|..+...+..........+..++..+.++..+ ++..+.....+..+.+
T Consensus 67 w~~i~~e~~~~a~~H~~~a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~~kl~~~~~~~~~~---l~kskk~Y~~~~ke~~ 143 (251)
T cd07653 67 FRSILNEVNDIAGQHELIAENLNSNVCKELKTLISELRQERKKHLSEGSKLQQKLESSIKQ---LEKSKKAYEKAFKEAE 143 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q 010679 141 NLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKK-----FYNDHLESLQVMEKNYITM 215 (504)
Q Consensus 141 eL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk-----~~~el~eqlqemek~L~sm 215 (504)
.+.....+.......-..++++++..+.+. ..+.+..+.++...-..+...+. .+..+.+.+++++......
T Consensus 144 ~a~~k~~~~~~~~~~s~~~~eK~~~k~~k~---~~~~~~a~~~Y~~~l~~~N~~~~~~y~~~~p~~~~~~q~le~~ri~~ 220 (251)
T cd07653 144 KAKQKYEKADADMNLTKADVEKAKANANLK---TQAAEEAKNEYAAQLQKFNKEQRQHYSTDLPQIFDKLQELDEKRINR 220 (251)
T ss_pred HHHHHHHHhhhhhccchhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHH
Q ss_pred HHHHHHHHHHHHh
Q 010679 216 ATEVEKLRAELMN 228 (504)
Q Consensus 216 e~EiekLraELek 228 (504)
-+++-..-.+++.
T Consensus 221 ~k~~l~~~~~~~~ 233 (251)
T cd07653 221 TVELLLQAAEIER 233 (251)
T ss_pred HHHHHHHHHHHHH
No 491
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.49 E-value=1.2 Score=43.83 Aligned_cols=121 Identities=15% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 84 AAAQHELQILHGQIGG-MKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR 162 (504)
Q Consensus 84 a~lqqEL~~L~~~L~~-l~ae~E~eL~eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~ 162 (504)
..+..++......++. +......-+..+.+-+.++.....+.+.+++.+.+-..++++....+++-....-.+++++..
T Consensus 18 d~~~~~i~n~~s~~D~f~q~~r~~~~nS~~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~ 97 (246)
T KOG4657|consen 18 DICEKDIHNQRSKIDSFIQSPRRRSMNSLVEFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKA 97 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHH
Q 010679 163 AHTDVQQIPALLSELESLRQEYHHCRGTYEYEK----KFYNDHLESLQV 207 (504)
Q Consensus 163 l~~elqql~~L~~EIeaLrqELq~LR~eLe~~k----k~~~el~eqlqe 207 (504)
+++ +++.+..-+..++.|+.+++.-|...+ +.++..-+..|+
T Consensus 98 ~q~---elEvl~~n~Q~lkeE~dd~keiIs~kr~~~~Ka~e~~~kRkQd 143 (246)
T KOG4657|consen 98 TQS---ELEVLRRNLQLLKEEKDDSKEIISQKRQALSKAKENAGKRKQD 143 (246)
T ss_pred HHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh
No 492
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=95.48 E-value=0.4 Score=41.00 Aligned_cols=81 Identities=16% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH-------------------HHHHHHHHHHHHHHHhhHHH
Q 010679 133 QKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPAL-------------------LSELESLRQEYHHCRGTYEY 193 (504)
Q Consensus 133 eqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L-------------------~~EIeaLrqELq~LR~eLe~ 193 (504)
+++..++..+..++..+..++..|..++..+..-+..|..+ ..-++.|..+++.+..+++.
T Consensus 1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~ 80 (106)
T PF01920_consen 1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKK 80 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010679 194 EKKFYNDHLESLQVMEKNYI 213 (504)
Q Consensus 194 ~kk~~~el~eqlqemek~L~ 213 (504)
+++....+.+++++++++|.
T Consensus 81 l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 81 LEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 493
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=95.48 E-value=0.81 Score=40.63 Aligned_cols=104 Identities=16% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH----HHHHHHHHHHHhHHH
Q 010679 54 KIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEK----IAKMEAELKTAEPVK 129 (504)
Q Consensus 54 eLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~ek----i~kLEaEL~ele~Lk 129 (504)
++-....+|-.+...+..-..++..+...+..-..+|......|.......+.-|++...+ +...+.+.+......
T Consensus 1 ~li~kkre~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~ 80 (126)
T PF13863_consen 1 ELIEKKREMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKE 80 (126)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 130 LEFQKSKTEAQNLVVAREELIAKVHQLT 157 (504)
Q Consensus 130 aELeqLr~ELqeL~aerqeL~aqvq~L~ 157 (504)
.+|..+..+|..+...+..+...++.+.
T Consensus 81 ~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 81 AEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=95.48 E-value=1.7 Score=42.15 Aligned_cols=151 Identities=14% Similarity=0.175 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELA--AAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTA 125 (504)
Q Consensus 48 ~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa--~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~el 125 (504)
+.....-|..++..+..|.....+|+..++....... ..+....+...-|.. +.-.+.++..+...+..|+..+-.+
T Consensus 22 ~~~~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~Al~~Lkr-KK~~E~ql~q~~~ql~nLEq~~~~i 100 (191)
T PTZ00446 22 NDEIYKAILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKILLKR-KKLYEQEIENILNNRLTLEDNMINL 100 (191)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH-------HHHHHHHHHHHhhHH
Q 010679 126 EPVKLE------FQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSEL-------ESLRQEYHHCRGTYE 192 (504)
Q Consensus 126 e~LkaE------LeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EI-------eaLrqELq~LR~eLe 192 (504)
+....+ +......+..+...+. ..+|+.|..+++.......+|.+....- ++|..||+.|.+ -+
T Consensus 101 E~a~~~~ev~~aLk~g~~aLK~~~k~~~--idkVd~lmDei~E~~e~~~EIseaLs~~~~~~~DEdELe~ELe~Le~-e~ 177 (191)
T PTZ00446 101 ENMHLHKIAVNALSYAANTHKKLNNEIN--TQKVEKIIDTIQENKDIQEEINQALSFNLLNNVDDDEIDKELDLLKE-QT 177 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH-HH
Q ss_pred HHHHHHHHHH
Q 010679 193 YEKKFYNDHL 202 (504)
Q Consensus 193 ~~kk~~~el~ 202 (504)
-..+.+.++.
T Consensus 178 l~~~ll~~~~ 187 (191)
T PTZ00446 178 MEEKLLKELI 187 (191)
T ss_pred HHHHHHHHHh
No 495
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=95.48 E-value=2.5 Score=41.71 Aligned_cols=161 Identities=14% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHhhhccc
Q 010679 50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQE-----------------------------LAAAQHELQILHGQIGGM 100 (504)
Q Consensus 50 ~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqE-----------------------------La~lqqEL~~L~~~L~~l 100 (504)
.||.++++.++=+.+|........+.+...+.. +..+-..+.+...+|..+
T Consensus 11 ~le~~~d~~~~~~~~l~~~~~~y~~~l~k~~~~g~~k~k~~p~~~Lg~~M~~~g~~lg~dS~~G~aL~~~G~a~~kia~~ 90 (215)
T cd07593 11 ELEKEIELRKEGMERLHRSTEAYVEYLSKKKPLLDDKDKCLPVEALGLVMINHGEEFPQDSEYGSCLSKLGRAHCKIGTL 90 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccccCChHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHH
Q 010679 101 KSERELQM-RNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQ-IPALLSELE 178 (504)
Q Consensus 101 ~ae~E~eL-~eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqq-l~~L~~EIe 178 (504)
+..+...+ ..+.+-|....++++.+...+..|+..|-++...+..++.....-..++.+|...+.+..+ .+.....+.
T Consensus 91 q~~f~~~~~~~~l~pL~~~l~~~k~i~k~RKkLe~rRLdyD~~ksk~~kak~~~~~~eeElr~Ae~kfees~E~a~~~M~ 170 (215)
T cd07593 91 QEEFADRLSDTFLANIERSLAEMKEYHSARKKLESRRLAYDAALTKSQKAKKEDSRLEEELRRAKAKYEESSEDVEARMV 170 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 010679 179 SLRQ-EYHHCRGTYEYEKKFYNDHLESLQVMEK 210 (504)
Q Consensus 179 aLrq-ELq~LR~eLe~~kk~~~el~eqlqemek 210 (504)
.+.. +.+.++.-.+.++.++....+..+.|+.
T Consensus 171 ~i~~~e~e~~~~L~~lv~AQl~Yh~q~~e~L~~ 203 (215)
T cd07593 171 AIKESEADQYRDLTDLLDAELDYHQQSLDVLRE 203 (215)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=95.47 E-value=0.31 Score=44.16 Aligned_cols=86 Identities=9% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 010679 69 NQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREE 148 (504)
Q Consensus 69 ~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerqe 148 (504)
++.|..-...+-+.|+.+-+.|...+++|.+-...++.++++..+-....+.+ +..++.++.+.+.++..++.....
T Consensus 38 rr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~e---V~~v~~dv~~i~~dv~~v~~~V~~ 114 (126)
T PF07889_consen 38 RRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDE---VTEVREDVSQIGDDVDSVQQMVEG 114 (126)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 010679 149 LIAKVHQLT 157 (504)
Q Consensus 149 L~aqvq~L~ 157 (504)
|+.++.+|+
T Consensus 115 Le~ki~~ie 123 (126)
T PF07889_consen 115 LEGKIDEIE 123 (126)
T ss_pred HHHHHHHHh
No 497
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=95.47 E-value=3.1 Score=41.99 Aligned_cols=161 Identities=17% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 010679 65 LATENQRLAATHGTLRQELA-AAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLV 143 (504)
Q Consensus 65 Le~e~qrLe~qi~~LkqELa-~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL~ 143 (504)
+..++..++.+|..+..+|. .+-..|..+..++...+.....+...++..+.+.-.+ ++..+.....+-.+.+.++
T Consensus 72 ~l~e~~~~A~~H~~~~~~L~~~v~~~l~~~~~~~k~~rK~~~~~~~k~qk~~~~~~~~---lekaKk~Y~~acke~E~A~ 148 (253)
T cd07676 72 TLNEMNDYAGQHEVISENLASQIIVELTRYVQELKQERKSHFHDGRKAQQHIETCWKQ---LESSKRRFERDCKEADRAQ 148 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH-HHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 144 VAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESL-RQEYHHCRGTY-EYEKKFYNDHLESLQVMEKNYITMATEVEK 221 (504)
Q Consensus 144 aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaL-rqELq~LR~eL-e~~kk~~~el~eqlqemek~L~sme~Eiek 221 (504)
............-..++++++..++.-.........- ...|+.+-..- .+....+.++.+.+|+|++.....-.++-.
T Consensus 149 ~~~~ka~~d~~~sk~~~eK~k~~~~~~~~~~e~aKn~Y~~~l~~~N~~q~~~Y~e~mp~vfd~lQ~lee~Ri~~l~e~l~ 228 (253)
T cd07676 149 QYFEKMDADINVTKADVEKARQQAQIRHQMAEDSKAEYSSYLQKFNKEQHEHYYTHIPNIFQKIQEMEERRIGRVGESMK 228 (253)
T ss_pred HHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHh
Q 010679 222 LRAELMN 228 (504)
Q Consensus 222 LraELek 228 (504)
.-.+++.
T Consensus 229 ~~~~~e~ 235 (253)
T cd07676 229 TYAEVDR 235 (253)
T ss_pred HHHHHHH
No 498
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=95.47 E-value=2.3 Score=41.07 Aligned_cols=152 Identities=16% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHH-----HHhH
Q 010679 53 QKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK-----TAEP 127 (504)
Q Consensus 53 qeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~-----ele~ 127 (504)
.++..+.+.++....+++.-..-+-.++++| ...-+..|-.++.-...+.=.-|..+.+.+..+-+... .+..
T Consensus 33 ~dVi~L~e~Ld~~L~~~~ar~~gIcpvr~~l--y~~~F~ELIRQVTi~C~ERGlLL~rvrde~~~~l~~y~~l~~s~~~f 110 (189)
T PF10211_consen 33 QDVIQLQEWLDKMLQQRQARETGICPVREEL--YSQCFDELIRQVTIDCPERGLLLLRVRDEYRMTLDAYQTLYESSIAF 110 (189)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccccHHHHHH--HHHHHHHHHHHHHhCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 010679 128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQV 207 (504)
Q Consensus 128 LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqe 207 (504)
.....-+......++..++.+|+.++..|+.++..++.+.+.+. +..-+....+......+++.+++....++.+++.
T Consensus 111 ~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~e--k~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 111 GMRKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLE--KREEELRQEEEKKHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred H
Q 010679 208 M 208 (504)
Q Consensus 208 m 208 (504)
+
T Consensus 189 ~ 189 (189)
T PF10211_consen 189 I 189 (189)
T ss_pred C
No 499
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=95.47 E-value=0.26 Score=46.44 Aligned_cols=87 Identities=21% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHHH
Q 010679 60 VEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPV-----KLEFQK 134 (504)
Q Consensus 60 eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~L-----kaELeq 134 (504)
+++..+..++..|..++..|+.++..++.+|..|...+.. .++...+.+|..++..+++.|..+..- ..|++.
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~--~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~ 149 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTN--EELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEK 149 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 010679 135 SKTEAQNLVVAREE 148 (504)
Q Consensus 135 Lr~ELqeL~aerqe 148 (504)
+..+...+......
T Consensus 150 ~~~~~~~~~k~w~k 163 (169)
T PF07106_consen 150 LEKEYKKWRKEWKK 163 (169)
T ss_pred HHHHHHHHHHHHHH
No 500
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=95.45 E-value=4.7 Score=43.49 Aligned_cols=183 Identities=16% Similarity=0.218 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHHHHHH
Q 010679 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLR-----------------------------------QELAAAQHELQI 92 (504)
Q Consensus 48 ~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~Lk-----------------------------------qELa~lqqEL~~ 92 (504)
...|..+|+..+.-+..-..-.+++........ ++|..++++|..
T Consensus 87 i~~l~~~i~~~k~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~lrrdLav 166 (426)
T smart00806 87 IDTLQNELDEVKQALESQREAIQRLKERQQNSAANIARPAASPSPVLASSSSAISLANNPDKLNKEQRAELKSLQRELAV 166 (426)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhcccCcccccCCCCcccccccccccccCCCcccchhHHHHHHHHHHHHHH
Q ss_pred HHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 010679 93 LHGQIGGMKSERELQMRNLTEKIAKMEAELKTAE------PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDL------ 160 (504)
Q Consensus 93 L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele------~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~EL------ 160 (504)
|+........+....|..+.+++.+++.---... -+..--.+|..+-+.|.....+|+.-|+.|..++
T Consensus 167 lRQ~~~~~~~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVR 246 (426)
T smart00806 167 LRQTHNSFFTEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDIIEALRKDVAQRGVR 246 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q ss_pred ---HHHHHhhhhhhHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010679 161 ---QRAHTDVQQIPALLSELESLRQEYHH----CRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP 230 (504)
Q Consensus 161 ---q~l~~elqql~~L~~EIeaLrqELq~----LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle 230 (504)
.+++.-.+.|....++|..++.=|.. .+.--+.+-..+-+.++.+.-++.-+..+...|+++..-+...+
T Consensus 247 p~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQedL~~DL~dDL~ka~eTf~lVe 323 (426)
T smart00806 247 PSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQEDLIADLKEDLEKAEETFDLVE 323 (426)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!