Query 010679
Match_columns 504
No_of_seqs 313 out of 1254
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 11:58:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010679.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010679hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 99.0 3.2E-07 1.1E-11 87.6 27.7 48 50-97 3-50 (284)
2 2dfs_A Myosin-5A; myosin-V, in 98.8 4.6E-08 1.6E-12 114.1 17.0 128 68-201 922-1049(1080)
3 3na7_A HP0958; flagellar bioge 98.8 2.3E-06 7.9E-11 84.4 25.0 108 49-160 14-127 (256)
4 1i84_S Smooth muscle myosin he 98.8 1.6E-08 5.6E-13 119.1 10.6 47 52-98 856-902 (1184)
5 1i84_S Smooth muscle myosin he 98.8 1.5E-08 5.1E-13 119.4 10.1 49 49-97 860-908 (1184)
6 3na7_A HP0958; flagellar bioge 98.6 7.1E-06 2.4E-10 80.9 21.8 58 62-123 13-70 (256)
7 2v71_A Nuclear distribution pr 98.4 3.6E-05 1.2E-09 72.4 21.3 63 59-121 9-71 (189)
8 2dfs_A Myosin-5A; myosin-V, in 98.4 3.4E-06 1.1E-10 98.5 17.5 72 138-209 978-1050(1080)
9 2v71_A Nuclear distribution pr 98.4 6.7E-05 2.3E-09 70.6 21.7 36 82-117 25-60 (189)
10 3vkg_A Dynein heavy chain, cyt 98.3 4.6E-05 1.6E-09 96.6 26.0 24 73-96 1933-1956(3245)
11 4gkw_A Spindle assembly abnorm 98.2 0.00069 2.3E-08 59.6 22.1 62 169-230 99-160 (167)
12 3oja_B Anopheles plasmodium-re 98.1 2.1E-05 7.2E-10 85.3 12.8 52 180-231 528-579 (597)
13 3oja_B Anopheles plasmodium-re 98.0 5.2E-05 1.8E-09 82.2 14.3 37 176-212 545-581 (597)
14 2efr_A General control protein 98.0 0.0037 1.3E-07 57.1 23.9 53 177-229 100-152 (155)
15 2ocy_A RAB guanine nucleotide 98.0 0.0011 3.8E-08 60.4 19.9 96 127-231 55-150 (154)
16 3o0z_A RHO-associated protein 98.0 0.0018 6.3E-08 59.6 21.5 52 177-228 99-154 (168)
17 4gkw_A Spindle assembly abnorm 97.9 0.0055 1.9E-07 53.9 22.7 27 182-208 119-145 (167)
18 3o0z_A RHO-associated protein 97.9 0.0017 5.9E-08 59.8 20.3 64 104-167 46-113 (168)
19 1deq_A Fibrinogen (alpha chain 97.8 0.014 4.7E-07 59.9 27.7 56 106-161 102-158 (390)
20 2efr_A General control protein 97.8 0.012 4E-07 53.8 24.1 52 172-223 102-153 (155)
21 2ocy_A RAB guanine nucleotide 97.6 0.0065 2.2E-07 55.3 18.7 26 184-209 117-142 (154)
22 2fxo_A Myosin heavy chain, car 97.5 0.0097 3.3E-07 52.6 18.4 41 190-230 84-124 (129)
23 3ol1_A Vimentin; structural ge 97.5 0.0019 6.5E-08 56.5 13.0 89 49-165 16-104 (119)
24 3ghg_A Fibrinogen alpha chain; 97.5 0.003 1E-07 67.0 16.7 111 46-163 46-157 (562)
25 3ghg_A Fibrinogen alpha chain; 97.4 0.0014 4.9E-08 69.4 14.2 13 219-231 178-190 (562)
26 2v4h_A NF-kappa-B essential mo 97.4 0.0024 8.1E-08 54.7 12.4 62 107-168 46-107 (110)
27 2fxo_A Myosin heavy chain, car 97.4 0.01 3.6E-07 52.4 17.2 43 50-92 10-52 (129)
28 3tnu_B Keratin, type II cytosk 97.3 0.0043 1.5E-07 54.8 14.1 74 126-199 32-106 (129)
29 3u1c_A Tropomyosin alpha-1 cha 97.3 0.0087 3E-07 50.8 15.1 30 198-227 67-96 (101)
30 3tnu_A Keratin, type I cytoske 97.3 0.0041 1.4E-07 55.2 13.4 93 126-225 34-127 (131)
31 3u1c_A Tropomyosin alpha-1 cha 97.2 0.014 4.7E-07 49.6 15.1 47 177-223 53-99 (101)
32 3ol1_A Vimentin; structural ge 97.2 0.022 7.6E-07 49.7 16.6 19 103-121 17-35 (119)
33 1deq_A Fibrinogen (alpha chain 97.1 0.0077 2.6E-07 61.7 15.0 23 172-194 138-160 (390)
34 2v4h_A NF-kappa-B essential mo 97.1 0.0064 2.2E-07 52.0 12.1 39 145-183 39-77 (110)
35 3r6n_A Desmoplakin; spectrin r 97.1 0.3 1E-05 51.7 27.9 32 199-230 238-269 (450)
36 3s84_A Apolipoprotein A-IV; fo 97.1 0.22 7.4E-06 49.4 25.0 46 45-90 10-60 (273)
37 3u59_A Tropomyosin beta chain; 97.1 0.018 6E-07 48.8 14.6 53 177-229 46-98 (101)
38 3u59_A Tropomyosin beta chain; 97.1 0.025 8.5E-07 47.9 15.4 49 175-223 51-99 (101)
39 3swk_A Vimentin; cytoskeleton, 97.0 0.0038 1.3E-07 51.6 9.5 49 116-164 35-83 (86)
40 3q8t_A Beclin-1; autophagy, AT 97.0 0.025 8.4E-07 47.6 14.5 57 175-231 39-95 (96)
41 2no2_A HIP-I, huntingtin-inter 97.0 0.027 9.4E-07 48.3 14.9 74 134-207 19-93 (107)
42 3mq9_A Bone marrow stromal ant 97.0 0.018 6.3E-07 60.6 16.9 30 201-230 441-470 (471)
43 3g67_A Methyl-accepting chemot 97.0 0.28 9.6E-06 46.9 28.9 30 197-226 180-209 (213)
44 2fic_A Bridging integrator 1; 97.0 0.29 1E-05 47.0 26.1 15 215-229 235-249 (251)
45 3g67_A Methyl-accepting chemot 96.9 0.32 1.1E-05 46.4 26.8 38 191-228 167-204 (213)
46 3jsv_C NF-kappa-B essential mo 96.8 0.008 2.7E-07 50.1 9.9 66 104-169 21-86 (94)
47 1cun_A Protein (alpha spectrin 96.8 0.32 1.1E-05 44.8 22.7 29 170-198 141-169 (213)
48 2e7s_A RAB guanine nucleotide 96.8 0.0054 1.8E-07 54.6 9.1 38 127-164 43-80 (135)
49 1u5p_A Spectrin alpha chain, b 96.7 0.38 1.3E-05 44.6 21.7 58 170-227 144-205 (216)
50 3mq7_A Bone marrow stromal ant 96.7 0.067 2.3E-06 46.1 14.6 30 170-199 73-102 (121)
51 2i1j_A Moesin; FERM, coiled-co 96.6 0.01 3.5E-07 64.9 12.2 123 102-231 331-461 (575)
52 2eqb_B RAB guanine nucleotide 96.6 0.098 3.4E-06 43.9 15.1 29 133-161 29-57 (97)
53 2nrj_A HBL B protein; enteroto 96.6 0.019 6.3E-07 59.0 12.9 23 203-225 264-286 (346)
54 3edv_A Spectrin beta chain, br 96.6 0.38 1.3E-05 47.4 22.2 19 208-226 296-314 (323)
55 2nrj_A HBL B protein; enteroto 96.6 0.07 2.4E-06 54.7 17.0 68 72-139 121-192 (346)
56 3jsv_C NF-kappa-B essential mo 96.5 0.014 4.8E-07 48.6 9.4 35 148-182 20-54 (94)
57 3pdy_A Plectin; cytoskeleton, 96.5 0.53 1.8E-05 44.1 22.5 132 68-203 39-173 (210)
58 2b5u_A Colicin E3; high resolu 96.5 0.15 5.1E-06 53.9 19.2 43 45-92 290-332 (551)
59 2no2_A HIP-I, huntingtin-inter 96.5 0.09 3.1E-06 45.1 14.7 33 116-148 47-79 (107)
60 3mq7_A Bone marrow stromal ant 96.5 0.064 2.2E-06 46.2 13.5 25 133-157 74-98 (121)
61 3mq9_A Bone marrow stromal ant 96.5 0.036 1.2E-06 58.4 15.0 69 127-195 401-470 (471)
62 1x79_B RAB GTPase binding effe 96.5 0.031 1.1E-06 48.2 11.6 17 105-121 44-60 (112)
63 3hnw_A Uncharacterized protein 96.5 0.048 1.7E-06 48.8 13.4 10 217-226 124-133 (138)
64 1x79_B RAB GTPase binding effe 96.5 0.054 1.9E-06 46.7 12.9 28 204-231 78-105 (112)
65 3plt_A Sphingolipid long chain 96.4 0.72 2.5E-05 44.6 23.0 15 150-164 110-124 (234)
66 3haj_A Human pacsin2 F-BAR; pa 96.4 0.17 5.8E-06 53.9 19.8 18 61-78 40-57 (486)
67 3oja_A Leucine-rich immune mol 96.4 0.032 1.1E-06 59.0 14.0 38 177-214 437-474 (487)
68 2v66_B Nuclear distribution pr 96.4 0.12 4.1E-06 44.5 14.8 23 63-85 6-28 (111)
69 3fb2_A Spectrin alpha chain, b 96.4 0.33 1.1E-05 45.4 19.5 21 71-91 50-70 (218)
70 3zx6_A HAMP, methyl-accepting 96.4 1 3.4E-05 45.6 27.5 17 51-67 39-55 (341)
71 3edu_A Beta-I spectrin, spectr 96.4 0.43 1.5E-05 44.6 20.2 18 139-156 110-127 (218)
72 1u4q_A Spectrin alpha chain, b 96.3 0.9 3.1E-05 44.5 23.1 26 172-197 252-277 (322)
73 3s4r_A Vimentin; alpha-helix, 96.3 0.056 1.9E-06 45.2 12.0 35 47-81 10-44 (93)
74 1m1j_B Fibrinogen beta chain; 96.3 0.12 4.1E-06 54.9 17.3 6 262-267 274-279 (464)
75 3q8t_A Beclin-1; autophagy, AT 96.3 0.18 6.1E-06 42.3 14.9 24 137-160 25-48 (96)
76 2efl_A Formin-binding protein 96.2 0.99 3.4E-05 44.1 23.1 12 218-229 253-264 (305)
77 1m1j_B Fibrinogen beta chain; 96.2 0.14 4.6E-06 54.5 17.3 12 72-83 98-109 (464)
78 3i00_A HIP-I, huntingtin-inter 96.2 0.018 6.3E-07 50.3 8.9 16 147-162 43-58 (120)
79 2zqm_A Prefoldin beta subunit 96.2 0.024 8.1E-07 48.6 9.5 29 200-228 81-109 (117)
80 3plt_A Sphingolipid long chain 96.2 0.71 2.4E-05 44.6 20.5 27 132-158 99-125 (234)
81 3haj_A Human pacsin2 F-BAR; pa 96.2 0.47 1.6E-05 50.4 21.4 8 203-210 231-238 (486)
82 2efk_A CDC42-interacting prote 96.2 1 3.6E-05 43.9 22.6 13 218-230 246-258 (301)
83 3a7p_A Autophagy protein 16; c 96.2 0.1 3.6E-06 47.1 13.6 31 173-203 101-131 (152)
84 1s35_A Beta-I spectrin, spectr 96.2 0.8 2.7E-05 42.3 20.7 27 69-95 35-61 (214)
85 3i00_A HIP-I, huntingtin-inter 96.2 0.025 8.7E-07 49.5 9.4 17 105-121 39-55 (120)
86 3a7p_A Autophagy protein 16; c 96.1 0.03 1E-06 50.6 10.0 9 220-228 135-143 (152)
87 2b5u_A Colicin E3; high resolu 96.1 0.35 1.2E-05 51.2 19.0 20 80-99 313-332 (551)
88 2xzr_A Immunoglobulin-binding 96.1 0.52 1.8E-05 39.3 16.9 44 50-93 3-46 (114)
89 3r6n_A Desmoplakin; spectrin r 96.1 1.9 6.4E-05 45.6 26.7 31 205-235 237-267 (450)
90 2zqm_A Prefoldin beta subunit 96.1 0.13 4.6E-06 43.8 13.5 35 178-212 73-107 (117)
91 2x3v_A Syndapin I, protein kin 96.0 0.7 2.4E-05 46.3 21.0 24 60-83 37-60 (337)
92 2v66_B Nuclear distribution pr 96.0 0.47 1.6E-05 40.8 16.5 13 108-120 5-17 (111)
93 2e7s_A RAB guanine nucleotide 96.0 0.013 4.5E-07 52.1 6.9 8 200-207 107-114 (135)
94 2i1j_A Moesin; FERM, coiled-co 96.0 0.0056 1.9E-07 66.9 5.3 38 126-163 345-382 (575)
95 2efk_A CDC42-interacting prote 95.9 1.4 4.7E-05 43.0 27.0 13 211-223 246-258 (301)
96 1d7m_A Cortexillin I; coiled-c 95.9 0.58 2E-05 38.4 16.3 80 146-228 20-99 (101)
97 1cun_A Protein (alpha spectrin 95.9 0.93 3.2E-05 41.6 19.7 25 177-201 141-165 (213)
98 1l8d_A DNA double-strand break 95.9 0.15 5.3E-06 43.2 13.1 39 127-165 7-45 (112)
99 2xnx_M M protein, M1-BC1; cell 95.9 0.03 1E-06 50.2 8.6 41 127-167 70-110 (146)
100 1m1j_A Fibrinogen alpha subuni 95.8 0.26 9E-06 51.6 16.7 59 105-163 99-158 (491)
101 4fla_A Regulation of nuclear P 95.8 0.12 4.2E-06 46.9 12.6 18 73-90 38-55 (152)
102 1fxk_A Prefoldin; archaeal pro 95.8 0.15 5.2E-06 42.7 12.4 25 203-227 79-103 (107)
103 3hnw_A Uncharacterized protein 95.7 0.25 8.7E-06 44.1 14.3 24 196-219 110-133 (138)
104 3ibp_A Chromosome partition pr 95.7 1.6 5.4E-05 43.5 21.0 50 48-97 5-57 (302)
105 1l8d_A DNA double-strand break 95.7 0.18 6.3E-06 42.7 12.9 10 144-153 31-40 (112)
106 3kbt_A Beta-I spectrin, spectr 95.6 1.3 4.4E-05 43.5 20.6 20 176-195 257-276 (326)
107 3abh_A Pacsin2, protein kinase 95.6 0.38 1.3E-05 47.7 16.7 20 60-79 46-65 (312)
108 1fxk_A Prefoldin; archaeal pro 95.6 0.15 5.3E-06 42.7 11.8 34 178-211 68-101 (107)
109 3hhm_B NISH2 P85alpha; PI3KCA, 95.6 0.29 1E-05 50.6 16.2 133 49-189 122-254 (373)
110 1f5n_A Interferon-induced guan 95.6 1.5 5.1E-05 48.0 22.4 16 210-225 567-582 (592)
111 1m1j_A Fibrinogen alpha subuni 95.5 0.29 1E-05 51.3 15.7 12 220-231 180-191 (491)
112 2xs1_A Programmed cell death 6 95.5 3.4 0.00012 46.0 25.6 23 6-28 328-350 (704)
113 2eqb_B RAB guanine nucleotide 95.5 0.25 8.5E-06 41.5 12.3 30 54-83 6-35 (97)
114 2b9c_A Striated-muscle alpha t 95.5 0.13 4.5E-06 46.4 11.5 36 180-215 85-120 (147)
115 2xhe_B Syntaxin1; exocytosis, 95.4 0.049 1.7E-06 53.9 9.4 35 42-76 37-71 (279)
116 3l4q_C Phosphatidylinositol 3- 95.4 0.67 2.3E-05 42.8 16.1 54 134-190 93-146 (170)
117 3aco_A Pacsin2, protein kinase 95.4 0.5 1.7E-05 47.7 16.9 20 60-79 46-65 (350)
118 2iak_A Bullous pemphigoid anti 95.4 0.88 3E-05 42.9 17.6 87 69-159 55-142 (224)
119 3tul_A Cell invasion protein S 95.3 0.47 1.6E-05 42.5 14.1 14 54-67 5-18 (158)
120 1f5n_A Interferon-induced guan 95.3 1.2 4.2E-05 48.6 20.7 18 215-232 565-582 (592)
121 3fb2_A Spectrin alpha chain, b 95.2 1.6 5.3E-05 40.7 18.8 8 215-222 203-210 (218)
122 1m1j_C Fibrinogen gamma chain; 95.2 0.23 8E-06 51.9 14.1 44 177-220 86-129 (409)
123 3pe0_A Plectin; cytoskeleton, 95.1 0.5 1.7E-05 46.8 15.6 35 197-231 151-185 (283)
124 2v0o_A FCHO2, FCH domain only 95.1 2.5 8.4E-05 40.7 24.8 11 219-229 237-247 (276)
125 1cii_A Colicin IA; bacteriocin 95.1 3.9 0.00013 43.0 23.4 25 135-159 361-385 (602)
126 3iox_A AGI/II, PA; alpha helix 95.1 0.36 1.2E-05 51.2 15.0 41 81-121 9-49 (497)
127 1m1j_C Fibrinogen gamma chain; 95.1 0.47 1.6E-05 49.6 15.9 48 46-93 20-67 (409)
128 3cvf_A Homer-3, homer protein 95.0 0.098 3.4E-06 42.4 8.2 60 51-110 4-63 (79)
129 1fxk_C Protein (prefoldin); ar 95.0 0.14 4.8E-06 44.9 10.1 30 177-206 90-119 (133)
130 1y1u_A Signal transducer and a 95.0 1.4 4.6E-05 48.2 19.7 34 46-79 12-45 (585)
131 3ajw_A Flagellar FLIJ protein; 95.0 1.7 5.8E-05 38.2 17.7 51 48-98 7-57 (150)
132 1wt6_A Myotonin-protein kinase 95.0 0.21 7.3E-06 40.4 10.0 52 115-166 16-67 (81)
133 3k29_A Putative uncharacterize 95.0 2.1 7.3E-05 39.1 22.5 12 111-122 53-64 (169)
134 2jee_A YIIU; FTSZ, septum, coi 94.9 0.31 1E-05 39.6 10.8 25 58-82 11-35 (81)
135 3abh_A Pacsin2, protein kinase 94.9 3.2 0.00011 40.9 21.5 14 69-82 48-61 (312)
136 1fio_A SSO1 protein; four heli 94.9 2.2 7.5E-05 39.3 18.5 23 53-75 9-31 (196)
137 2fic_A Bridging integrator 1; 94.9 2.8 9.6E-05 40.0 20.8 26 54-79 53-78 (251)
138 1sjj_A Actinin; 3-helix bundle 94.8 1.4 4.9E-05 49.6 20.3 12 48-59 337-348 (863)
139 3cve_A Homer protein homolog 1 94.8 0.21 7.1E-06 39.8 9.3 55 57-111 4-58 (72)
140 4abx_A DNA repair protein RECN 94.7 2 7E-05 39.3 17.6 20 142-161 92-111 (175)
141 1u5p_A Spectrin alpha chain, b 94.7 2.6 8.8E-05 38.8 19.8 34 174-207 141-174 (216)
142 3edv_A Spectrin beta chain, br 94.7 3.5 0.00012 40.3 25.5 8 54-61 47-54 (323)
143 2q12_A DIP13 alpha, DCC-intera 94.7 3.4 0.00011 39.9 25.8 28 51-78 19-46 (265)
144 3okq_A BUD site selection prot 94.7 1.6 5.6E-05 38.9 15.7 16 108-123 56-71 (141)
145 2dq0_A Seryl-tRNA synthetase; 94.6 0.25 8.5E-06 52.4 12.6 13 207-219 87-99 (455)
146 3s4r_A Vimentin; alpha-helix, 94.6 0.31 1E-05 40.6 10.5 32 130-161 56-87 (93)
147 1gk4_A Vimentin; intermediate 94.6 0.47 1.6E-05 38.6 11.5 8 111-118 31-38 (84)
148 3c98_B Syntaxin-1A; protein co 94.6 1.7 5.8E-05 41.4 17.6 16 51-66 45-60 (279)
149 2avr_X Adhesion A; antiparalle 94.6 0.73 2.5E-05 40.0 13.0 15 195-209 70-84 (119)
150 2b9c_A Striated-muscle alpha t 94.5 2.1 7.1E-05 38.6 16.5 20 144-163 73-92 (147)
151 2a01_A Apolipoprotein A-I; fou 94.5 0.4 1.4E-05 46.5 12.7 10 51-60 11-20 (243)
152 1hci_A Alpha-actinin 2; triple 94.4 4.6 0.00016 41.8 21.8 14 77-90 175-188 (476)
153 3edu_A Beta-I spectrin, spectr 94.4 1.5 5.2E-05 40.8 16.4 16 209-224 186-201 (218)
154 3bas_A Myosin heavy chain, str 94.4 0.69 2.4E-05 38.1 12.2 31 130-160 21-51 (89)
155 1uru_A Amphiphysin; endocytosi 94.4 3.4 0.00012 39.0 23.7 31 52-82 36-66 (244)
156 3hhm_B NISH2 P85alpha; PI3KCA, 94.4 0.77 2.6E-05 47.5 15.2 22 203-224 233-254 (373)
157 2v0o_A FCHO2, FCH domain only 94.3 3.9 0.00013 39.2 24.0 6 215-220 240-245 (276)
158 1fxk_C Protein (prefoldin); ar 94.2 0.98 3.4E-05 39.4 13.6 35 194-228 93-127 (133)
159 2p22_C Protein SRN2; endosome, 94.2 0.76 2.6E-05 43.2 13.5 6 232-237 181-186 (192)
160 1wle_A Seryl-tRNA synthetase; 94.2 0.46 1.6E-05 51.0 13.6 14 147-160 87-100 (501)
161 3l4q_C Phosphatidylinositol 3- 94.2 3.4 0.00012 38.0 17.8 51 177-227 98-148 (170)
162 1bf5_A Signal transducer and a 94.2 1.7 5.7E-05 47.2 17.7 26 50-75 6-31 (575)
163 3iyk_A VP5; icosahedral virus; 94.2 2.7 9.3E-05 44.5 18.7 18 177-194 191-208 (526)
164 3ajw_A Flagellar FLIJ protein; 94.2 2.5 8.4E-05 37.1 16.3 39 172-210 78-116 (150)
165 3ghg_C Fibrinogen gamma chain; 94.1 0.61 2.1E-05 48.7 13.9 25 180-204 89-113 (411)
166 3iox_A AGI/II, PA; alpha helix 94.1 0.86 2.9E-05 48.4 14.8 48 49-96 5-52 (497)
167 4akv_A Sorting nexin-33; trans 94.1 6.3 0.00021 40.6 23.8 32 47-78 182-213 (386)
168 3tul_A Cell invasion protein S 94.1 0.77 2.6E-05 41.1 12.3 11 78-88 24-34 (158)
169 1bf5_A Signal transducer and a 94.0 3.5 0.00012 44.8 19.9 24 59-82 8-31 (575)
170 3qne_A Seryl-tRNA synthetase, 94.0 0.24 8.1E-06 53.0 10.7 16 205-220 87-102 (485)
171 3ghg_C Fibrinogen gamma chain; 93.9 0.94 3.2E-05 47.3 14.8 20 46-65 20-39 (411)
172 3nmd_A CGMP dependent protein 93.9 0.23 7.8E-06 39.5 7.8 35 198-232 35-69 (72)
173 2avr_X Adhesion A; antiparalle 93.9 2.1 7.1E-05 37.1 14.4 17 50-66 6-22 (119)
174 2x3v_A Syndapin I, protein kin 93.9 5.7 0.00019 39.5 25.2 11 219-229 265-275 (337)
175 1ic2_A Tropomyosin alpha chain 93.9 0.68 2.3E-05 37.4 10.9 12 109-120 44-55 (81)
176 1nfn_A Apolipoprotein E3; lipi 93.9 0.45 1.5E-05 44.7 11.2 25 52-76 27-51 (191)
177 3qh9_A Liprin-beta-2; coiled-c 93.8 0.51 1.7E-05 38.1 9.7 55 172-226 23-77 (81)
178 1go4_E MAD1 (mitotic arrest de 93.8 0.43 1.5E-05 40.3 9.8 34 129-162 11-44 (100)
179 3bas_A Myosin heavy chain, str 93.8 0.82 2.8E-05 37.6 11.3 44 47-90 8-51 (89)
180 3aco_A Pacsin2, protein kinase 93.8 6.3 0.00021 39.6 22.1 14 69-82 48-61 (350)
181 3etw_A Adhesin A; antiparallel 93.7 2.2 7.7E-05 37.0 14.4 11 53-63 9-19 (119)
182 2xs1_A Programmed cell death 6 93.6 6.6 0.00023 43.6 22.1 28 201-228 672-699 (704)
183 3ghg_B Fibrinogen beta chain; 93.6 0.64 2.2E-05 49.1 12.9 6 262-267 269-274 (461)
184 1uru_A Amphiphysin; endocytosi 93.5 5.1 0.00017 37.8 19.8 32 49-80 40-71 (244)
185 1wt6_A Myotonin-protein kinase 93.5 0.56 1.9E-05 37.9 9.4 35 197-231 39-73 (81)
186 2l7b_A Apolipoprotein E, APO-E 93.5 0.54 1.9E-05 47.3 11.8 12 217-228 264-275 (307)
187 3pe0_A Plectin; cytoskeleton, 93.4 6.4 0.00022 38.7 19.8 25 72-96 46-70 (283)
188 3m91_A Proteasome-associated A 93.4 0.25 8.4E-06 36.8 6.6 42 52-93 8-49 (51)
189 1qu7_A Methyl-accepting chemot 93.4 5.7 0.0002 37.9 24.1 9 219-227 212-220 (227)
190 2pms_C Pneumococcal surface pr 93.3 1.1 3.7E-05 39.2 11.8 22 78-99 10-31 (125)
191 1dn1_B Syntaxin 1A, syntaxin b 93.3 2.9 9.8E-05 41.0 16.5 29 49-77 31-59 (267)
192 3i2w_A Syndapin, LD46328P; EFC 93.3 1.7 5.9E-05 42.4 15.0 17 62-78 27-43 (290)
193 2lem_A Apolipoprotein A-I; lip 93.3 0.7 2.4E-05 44.0 11.7 12 128-139 85-96 (216)
194 2pms_C Pneumococcal surface pr 93.3 0.29 9.8E-06 42.9 8.1 22 104-125 11-32 (125)
195 1go4_E MAD1 (mitotic arrest de 93.2 0.4 1.4E-05 40.5 8.6 19 211-229 76-94 (100)
196 1quu_A Human skeletal muscle a 93.2 5.9 0.0002 37.6 24.5 17 171-187 165-181 (250)
197 3ghg_B Fibrinogen beta chain; 93.1 1.1 3.7E-05 47.4 13.7 25 204-228 164-188 (461)
198 2j69_A Bacterial dynamin-like 93.1 5.1 0.00017 44.5 19.9 14 216-229 675-688 (695)
199 1bg1_A Protein (transcription 93.0 1.5 5.2E-05 47.8 15.1 27 49-75 16-42 (596)
200 1quu_A Human skeletal muscle a 93.0 6.4 0.00022 37.3 22.1 15 75-89 56-70 (250)
201 1gk4_A Vimentin; intermediate 92.9 2.3 7.9E-05 34.5 12.7 48 173-227 31-78 (84)
202 4dk0_A Putative MACA; alpha-ha 92.9 0.22 7.7E-06 50.2 8.1 23 207-229 133-155 (369)
203 3dyt_A Sorting nexin-9; 3-heli 92.9 9.2 0.00031 38.9 22.7 31 48-78 163-193 (366)
204 1yvl_A Signal transducer and a 92.8 2.5 8.6E-05 46.8 16.7 22 58-79 142-163 (683)
205 4hpq_C ATG17, KLTH0D15642P; au 92.8 11 0.00036 39.5 25.8 9 75-83 169-177 (413)
206 3pdy_A Plectin; cytoskeleton, 92.8 6.2 0.00021 36.7 17.5 33 176-208 139-171 (210)
207 2dq3_A Seryl-tRNA synthetase; 92.6 0.17 5.8E-06 53.2 6.8 13 208-220 87-99 (425)
208 1qu7_A Methyl-accepting chemot 92.6 7.4 0.00025 37.1 23.6 12 217-228 206-217 (227)
209 3uun_A Dystrophin; triple heli 92.5 3.4 0.00012 34.1 13.7 16 107-122 10-25 (119)
210 1xaw_A Occludin; coiled-coil, 92.4 2.3 7.7E-05 38.0 12.8 34 129-162 51-84 (140)
211 4emc_A Monopolin complex subun 92.4 0.39 1.3E-05 44.8 8.0 50 49-98 9-58 (190)
212 1x8y_A Lamin A/C; structural p 92.3 0.87 3E-05 37.2 9.3 15 177-191 37-51 (86)
213 3iv1_A Tumor susceptibility ge 92.2 0.99 3.4E-05 36.4 9.2 54 177-230 20-73 (78)
214 1bg1_A Protein (transcription 92.2 2.7 9.1E-05 45.9 15.6 31 52-82 12-42 (596)
215 1wle_A Seryl-tRNA synthetase; 92.1 1.7 5.7E-05 46.7 13.8 20 44-63 39-58 (501)
216 3i2w_A Syndapin, LD46328P; EFC 92.1 3.9 0.00013 39.9 15.6 7 222-228 255-261 (290)
217 3r2p_A Apolipoprotein A-I; amp 92.1 0.7 2.4E-05 42.9 9.6 16 47-62 8-23 (185)
218 1yvl_A Signal transducer and a 92.1 7.2 0.00025 43.2 19.1 15 211-225 297-311 (683)
219 2d1l_A Metastasis suppressor p 92.0 9.6 0.00033 37.2 21.4 44 186-229 190-233 (253)
220 3fhn_A Protein transport prote 92.0 3.5 0.00012 45.9 16.6 24 57-80 14-37 (706)
221 3fpp_A Macrolide-specific effl 92.0 0.16 5.3E-06 50.9 5.4 14 217-230 135-148 (341)
222 4avm_A Bridging integrator 2; 91.9 9 0.00031 36.7 23.5 19 177-195 162-180 (237)
223 4dk0_A Putative MACA; alpha-ha 91.9 0.2 6.7E-06 50.7 6.2 28 204-231 123-150 (369)
224 3lay_A Zinc resistance-associa 91.9 1.1 3.8E-05 41.5 10.6 9 220-228 134-142 (175)
225 3fpp_A Macrolide-specific effl 91.9 0.28 9.5E-06 49.0 7.2 26 205-230 130-155 (341)
226 3iyk_A VP5; icosahedral virus; 91.7 11 0.00038 40.0 19.0 10 50-59 94-103 (526)
227 3qne_A Seryl-tRNA synthetase, 91.7 0.38 1.3E-05 51.4 8.3 24 204-227 79-102 (485)
228 3fx0_A NF-kappa-B essential mo 91.7 0.067 2.3E-06 44.6 1.9 59 103-161 35-93 (96)
229 2qih_A Protein USPA1; trimeric 91.6 6.8 0.00023 34.7 19.1 10 151-160 75-84 (157)
230 4h22_A Leucine-rich repeat fli 91.6 0.51 1.8E-05 39.9 7.2 29 63-91 19-47 (103)
231 4dnd_A Syntaxin-10, SYN10; str 91.5 1.1 3.7E-05 39.6 9.7 16 51-66 32-47 (130)
232 3cve_A Homer protein homolog 1 91.5 1.7 5.9E-05 34.5 9.7 22 139-160 9-30 (72)
233 3qwe_A GMIP, GEM-interacting p 91.4 12 0.00041 37.1 20.8 20 80-99 100-119 (279)
234 2lw1_A ABC transporter ATP-bin 91.4 1.2 4.2E-05 36.4 9.4 24 177-200 58-81 (89)
235 1cii_A Colicin IA; bacteriocin 91.4 16 0.00055 38.5 26.4 37 131-167 350-386 (602)
236 4h8s_A DCC-interacting protein 91.3 14 0.00048 37.8 26.8 37 50-86 41-77 (407)
237 2bsg_A Fibritin; viral protein 91.2 1.1 3.7E-05 47.5 10.9 7 24-30 8-14 (487)
238 4a3a_A Amphiphysin; structural 91.2 11 0.00038 36.3 24.2 22 177-198 167-188 (243)
239 2ap3_A Conserved hypothetical 91.1 4.8 0.00016 38.0 14.2 31 109-139 73-103 (199)
240 4dyl_A Tyrosine-protein kinase 91.1 15 0.00053 37.8 23.6 18 175-192 309-326 (406)
241 3uul_A Utrophin; spectrin repe 91.0 2.8 9.7E-05 34.6 11.6 21 104-124 7-27 (118)
242 1gqe_A Release factor 2, RF2; 90.9 4.8 0.00016 41.4 15.1 12 176-187 102-113 (365)
243 1t3j_A Mitofusin 1; coiled coi 90.9 0.81 2.8E-05 38.3 7.7 35 110-144 51-85 (96)
244 2w83_C C-JUN-amino-terminal ki 90.8 1.3 4.6E-05 35.3 8.5 10 200-209 62-71 (77)
245 1ik9_A DNA repair protein XRCC 90.8 4.5 0.00016 38.5 14.0 47 46-92 117-164 (213)
246 1hci_A Alpha-actinin 2; triple 90.7 17 0.00057 37.5 26.6 14 45-58 98-111 (476)
247 4e61_A Protein BIM1; EB1-like 90.6 1.7 5.9E-05 36.9 9.6 49 125-173 6-54 (106)
248 4dvz_A Cytotoxicity-associated 90.6 14 0.00048 38.2 17.9 14 148-161 479-492 (569)
249 2bsg_A Fibritin; viral protein 90.6 0.54 1.8E-05 49.8 7.9 35 50-84 51-85 (487)
250 3lss_A Seryl-tRNA synthetase; 90.5 1.2 4.2E-05 47.5 10.8 12 43-54 5-16 (484)
251 1hs7_A Syntaxin VAM3; UP-and-D 90.5 2.5 8.5E-05 35.5 10.4 52 173-224 38-92 (97)
252 3efg_A Protein SLYX homolog; x 90.3 1 3.5E-05 36.3 7.6 53 47-99 8-60 (78)
253 1t3j_A Mitofusin 1; coiled coi 90.3 0.73 2.5E-05 38.6 6.9 40 103-142 51-90 (96)
254 3qh9_A Liprin-beta-2; coiled-c 90.2 2.8 9.5E-05 33.8 10.0 31 126-156 22-52 (81)
255 2w83_C C-JUN-amino-terminal ki 90.1 2.3 8E-05 33.9 9.3 21 59-79 8-28 (77)
256 2zdi_C Prefoldin subunit alpha 89.9 0.88 3E-05 40.8 7.8 28 177-204 100-127 (151)
257 2zdi_C Prefoldin subunit alpha 89.8 1.9 6.5E-05 38.5 10.0 31 197-227 106-136 (151)
258 3qwe_A GMIP, GEM-interacting p 89.8 17 0.00056 36.0 21.2 17 107-123 134-150 (279)
259 1jcd_A Major outer membrane li 89.8 1.3 4.4E-05 33.0 7.2 46 53-98 4-49 (52)
260 3lay_A Zinc resistance-associa 89.8 1.8 6.1E-05 40.1 9.9 22 206-227 116-137 (175)
261 3ni0_A Bone marrow stromal ant 89.6 7.8 0.00027 32.2 12.4 19 170-188 69-87 (99)
262 2xdj_A Uncharacterized protein 89.5 3.3 0.00011 33.7 10.1 41 172-212 24-64 (83)
263 3he5_B Synzip2; heterodimeric 89.3 1.4 4.6E-05 31.4 6.6 41 58-98 8-48 (52)
264 2etd_A LEMA protein; bromodoma 89.3 12 0.0004 34.4 15.0 10 180-189 108-117 (171)
265 3htk_A Structural maintenance 89.2 2.8 9.7E-05 31.4 9.0 28 200-227 30-57 (60)
266 3nmd_A CGMP dependent protein 89.1 1.3 4.6E-05 35.0 7.2 47 47-93 20-66 (72)
267 2k48_A Nucleoprotein; viral pr 89.1 1.7 5.8E-05 36.7 8.2 27 62-88 37-63 (107)
268 2iak_A Bullous pemphigoid anti 89.1 14 0.00049 34.4 16.0 14 212-225 201-214 (224)
269 3zbh_A ESXA; unknown function, 89.0 6.9 0.00024 31.3 12.0 13 148-160 27-39 (99)
270 3a7o_A Autophagy protein 16; c 89.0 3 0.0001 32.8 9.0 50 44-93 9-58 (75)
271 3iv1_A Tumor susceptibility ge 89.0 5.9 0.0002 31.8 11.0 22 111-132 16-37 (78)
272 2ke4_A CDC42-interacting prote 88.9 1.9 6.5E-05 36.2 8.6 76 52-133 14-89 (98)
273 2j69_A Bacterial dynamin-like 88.9 18 0.00061 40.1 19.0 18 208-225 474-491 (695)
274 2xdj_A Uncharacterized protein 88.9 1.9 6.3E-05 35.2 8.2 17 81-97 27-43 (83)
275 2dnx_A Syntaxin-12; snare, HAB 88.8 3.6 0.00012 36.0 10.7 16 136-151 50-65 (130)
276 1gqe_A Release factor 2, RF2; 88.7 8 0.00027 39.7 14.8 6 183-188 102-107 (365)
277 3m3w_A Pacsin3, protein kinase 88.6 5.7 0.0002 39.6 13.6 155 69-231 26-204 (320)
278 3thf_A Protein shroom; coiled- 88.5 16 0.00054 34.1 25.3 35 127-161 84-118 (190)
279 1vcs_A Vesicle transport throu 88.5 2.9 0.0001 35.1 9.6 20 105-124 44-63 (102)
280 2d4y_A HAP1, flagellar HOOK-as 88.5 14 0.00049 38.6 17.2 19 215-233 134-152 (463)
281 2qyw_A Vesicle transport throu 88.4 5.5 0.00019 33.4 11.2 22 104-125 54-75 (102)
282 3lss_A Seryl-tRNA synthetase; 88.2 2.7 9.4E-05 44.8 11.3 21 200-220 115-135 (484)
283 3zbh_A ESXA; unknown function, 88.2 8.3 0.00028 30.8 12.0 14 209-222 76-89 (99)
284 3mov_A Lamin-B1; LMNB1, B-type 88.1 2.4 8E-05 35.4 8.6 12 215-226 77-88 (95)
285 4etp_A Kinesin-like protein KA 88.0 0.96 3.3E-05 47.1 7.6 53 178-230 6-58 (403)
286 1y1u_A Signal transducer and a 87.9 34 0.0012 37.2 20.5 33 53-85 12-44 (585)
287 1zww_A SH3-containing GRB2-lik 87.7 20 0.00069 34.4 22.8 25 47-71 32-56 (256)
288 1ses_A Seryl-tRNA synthetase; 87.6 2.1 7.2E-05 44.8 9.9 25 203-227 71-95 (421)
289 2ap3_A Conserved hypothetical 87.6 19 0.00065 33.9 15.9 6 82-87 41-46 (199)
290 1s35_A Beta-I spectrin, spectr 87.3 17 0.00058 33.1 23.9 17 140-156 110-126 (214)
291 2yfa_A MCPS, methyl-accepting 87.1 20 0.00067 33.6 26.9 45 78-124 53-97 (258)
292 3vp9_A General transcriptional 87.1 0.99 3.4E-05 37.5 5.6 12 217-228 75-86 (92)
293 4emc_A Monopolin complex subun 87.1 2.4 8.3E-05 39.5 8.8 24 69-92 22-45 (190)
294 3cl3_D NF-kappa-B essential mo 87.0 2.3 8E-05 37.1 8.1 13 147-159 58-70 (130)
295 2p22_A Suppressor protein STP2 87.0 19 0.00064 33.2 18.1 23 175-197 115-137 (174)
296 3m9b_A Proteasome-associated A 87.0 0.51 1.7E-05 46.1 4.4 35 197-231 62-96 (251)
297 2y3a_B Phosphatidylinositol 3- 86.8 0.99 3.4E-05 45.3 6.6 6 155-160 115-120 (302)
298 3g9g_A Suppressor of yeast pro 86.6 27 0.00091 34.6 19.2 12 216-227 257-268 (287)
299 3gwk_C SAG1039, putative uncha 86.5 11 0.00038 30.2 12.6 15 147-161 25-39 (98)
300 2zuo_A MVP, major vault protei 86.5 48 0.0017 37.4 24.8 13 217-229 790-802 (861)
301 4etp_A Kinesin-like protein KA 86.5 1.9 6.4E-05 44.9 8.7 53 172-224 7-59 (403)
302 4g2k_A General control protein 86.4 9.7 0.00033 32.9 11.5 6 219-224 116-121 (125)
303 2j1d_G DAAM1, disheveled-assoc 86.3 13 0.00045 39.3 15.4 17 106-122 299-315 (483)
304 4aj5_K Spindle and kinetochore 86.3 13 0.00044 32.3 12.3 17 107-123 6-22 (123)
305 1s94_A S-syntaxin; three helix 86.2 11 0.00038 34.2 13.0 16 108-123 45-60 (180)
306 3ilw_A DNA gyrase subunit A; D 86.0 7.2 0.00025 41.4 12.9 45 176-227 417-461 (470)
307 3he5_B Synzip2; heterodimeric 85.9 2.6 8.9E-05 30.0 6.4 30 198-227 19-48 (52)
308 2pih_A Protein YMCA; regulate 85.9 19 0.00064 32.2 14.1 16 204-219 90-105 (151)
309 2fup_A Hypothetical protein PA 85.9 12 0.0004 32.9 12.6 6 238-243 136-141 (157)
310 2z0v_A SH3-containing GRB2-lik 85.6 25 0.00086 33.4 20.5 15 175-189 165-179 (240)
311 2q6q_A Spindle POLE BODY compo 85.6 5.8 0.0002 31.0 8.7 44 182-225 17-60 (74)
312 4dvy_P Cytotoxicity-associated 85.5 25 0.00084 37.8 16.3 14 148-161 739-752 (876)
313 3c9i_A Tail needle protein GP2 85.5 5.7 0.00019 37.4 10.4 45 105-152 104-148 (242)
314 3f31_A Spectrin alpha chain, b 85.4 2.9 9.8E-05 36.9 8.3 8 50-57 16-23 (149)
315 3opc_A Uncharacterized protein 85.4 19 0.00064 31.8 14.9 17 215-231 115-131 (154)
316 3csx_A Putative uncharacterize 85.4 1.8 6.2E-05 35.0 6.1 30 131-160 16-45 (81)
317 3m91_A Proteasome-associated A 85.2 3.4 0.00012 30.6 7.1 17 212-228 32-48 (51)
318 1i6z_A BAG-family molecular ch 85.1 11 0.00037 33.3 11.5 23 62-84 23-45 (135)
319 1xaw_A Occludin; coiled-coil, 85.1 16 0.00056 32.5 12.8 18 125-142 61-78 (140)
320 2f1m_A Acriflavine resistance 84.9 4.3 0.00015 39.0 10.0 17 214-230 116-132 (277)
321 2qyw_A Vesicle transport throu 84.7 15 0.0005 30.8 11.9 18 209-226 84-101 (102)
322 1jcd_A Major outer membrane li 84.6 4.5 0.00015 30.1 7.5 10 179-188 36-45 (52)
323 3onj_A T-snare VTI1; helix, HA 84.6 11 0.00038 31.2 11.0 13 216-228 78-91 (97)
324 3m9b_A Proteasome-associated A 84.5 0.96 3.3E-05 44.1 5.0 19 107-125 76-94 (251)
325 3ni0_A Bone marrow stromal ant 84.5 16 0.00056 30.3 11.6 12 205-216 69-80 (99)
326 2p01_A Alpha-2-macroglobulin r 84.4 36 0.0012 34.1 16.4 57 174-230 237-315 (323)
327 4dci_A Uncharacterized protein 84.4 9.4 0.00032 34.4 11.1 7 177-183 75-81 (150)
328 2dq3_A Seryl-tRNA synthetase; 84.3 0.88 3E-05 47.7 5.0 12 149-160 49-60 (425)
329 2iub_A CORA, divalent cation t 84.1 24 0.0008 35.7 15.5 146 93-247 182-329 (363)
330 2js5_A Uncharacterized protein 83.7 3.2 0.00011 32.8 6.7 28 132-159 5-32 (71)
331 2q13_A DCC-interacting protein 83.7 40 0.0014 34.1 27.3 27 51-77 19-45 (385)
332 1r8i_A TRAC; VIRB5, helical bu 83.7 1.9 6.6E-05 40.8 6.7 25 71-95 19-43 (213)
333 2w6a_A ARF GTPase-activating p 83.6 5.2 0.00018 30.4 7.5 45 50-94 17-61 (63)
334 2inr_A DNA topoisomerase 4 sub 83.5 4.3 0.00015 43.6 9.9 45 177-228 456-500 (514)
335 3rrk_A V-type ATPase 116 kDa s 83.4 26 0.00089 35.0 15.5 145 44-189 90-279 (357)
336 3ilw_A DNA gyrase subunit A; D 83.2 18 0.00062 38.3 14.4 10 147-156 426-435 (470)
337 2c5k_T Syntaxin TLG1, T-snare 83.0 15 0.00051 30.4 11.0 15 51-65 11-25 (95)
338 3u06_A Protein claret segregat 83.0 2.7 9.4E-05 43.9 8.1 50 181-230 9-58 (412)
339 4fi5_A Nucleoprotein; structur 83.0 4.6 0.00016 34.5 7.9 13 47-59 23-35 (113)
340 3ra3_B P2F; coiled coil domain 82.9 0.99 3.4E-05 28.3 2.8 25 62-86 2-26 (28)
341 1lq7_A Alpha3W; three helix bu 82.8 3.3 0.00011 30.8 6.1 15 126-140 28-42 (67)
342 1zvu_A Topoisomerase IV subuni 82.8 4.7 0.00016 44.9 10.1 46 176-228 403-448 (716)
343 2ke4_A CDC42-interacting prote 82.5 16 0.00055 30.5 11.1 14 177-190 64-77 (98)
344 3dyt_A Sorting nexin-9; 3-heli 82.4 45 0.0015 33.8 22.3 26 48-73 170-195 (366)
345 2f1m_A Acriflavine resistance 82.4 2.7 9.2E-05 40.5 7.3 11 218-228 113-123 (277)
346 3d2f_A Heat shock protein homo 82.2 2.9 0.0001 46.3 8.3 11 53-63 527-537 (675)
347 4akv_A Sorting nexin-33; trans 82.1 48 0.0016 33.9 23.9 48 48-95 190-238 (386)
348 3htk_A Structural maintenance 82.1 7 0.00024 29.2 8.0 12 52-63 11-22 (60)
349 1g8x_A Myosin II heavy chain f 82.0 20 0.00069 41.6 15.5 15 47-61 750-764 (1010)
350 3efg_A Protein SLYX homolog; x 81.7 3.5 0.00012 33.1 6.5 42 186-227 18-59 (78)
351 2xcs_B DNA gyrase subunit B, D 81.7 8.2 0.00028 42.8 11.5 45 177-228 639-683 (692)
352 1qvr_A CLPB protein; coiled co 81.7 16 0.00056 41.1 14.5 16 107-122 402-417 (854)
353 4hpq_C ATG17, KLTH0D15642P; au 81.7 54 0.0018 34.2 26.4 15 65-79 195-209 (413)
354 2w6b_A RHO guanine nucleotide 81.5 5.6 0.00019 29.7 6.9 22 176-197 18-39 (56)
355 2y3a_B Phosphatidylinositol 3- 81.4 5.9 0.0002 39.6 9.5 16 209-224 131-146 (302)
356 4aj5_K Spindle and kinetochore 81.3 22 0.00077 30.8 11.7 22 67-88 5-26 (123)
357 2cly_A ATP synthase B chain, m 81.1 17 0.00059 34.6 12.1 14 49-62 44-57 (214)
358 2w6a_A ARF GTPase-activating p 81.1 11 0.00038 28.6 8.5 39 184-222 22-60 (63)
359 2yy0_A C-MYC-binding protein; 81.0 2.7 9.3E-05 31.3 5.2 26 176-201 20-45 (53)
360 3a7o_A Autophagy protein 16; c 81.0 9.1 0.00031 30.1 8.2 46 70-119 14-59 (75)
361 1gd2_E Transcription factor PA 80.8 3.4 0.00012 32.6 5.9 46 49-94 25-70 (70)
362 4b6x_A AVRRPS4, avirulence pro 80.6 17 0.00059 29.2 9.9 47 146-197 31-77 (90)
363 4a3a_A Amphiphysin; structural 80.6 41 0.0014 32.2 23.1 22 170-191 167-188 (243)
364 1deb_A APC protein, adenomatou 80.5 6.1 0.00021 29.0 6.6 22 173-194 8-29 (54)
365 1kmi_Z CHEZ, chemotaxis protei 80.3 33 0.0011 32.5 13.9 15 49-63 15-29 (214)
366 3fhn_A Protein transport prote 80.2 11 0.00039 41.9 12.0 25 64-88 14-38 (706)
367 3u0c_A Invasin IPAB, 62 kDa an 80.1 36 0.0012 31.1 17.8 31 50-80 49-81 (201)
368 3onj_A T-snare VTI1; helix, HA 79.9 24 0.00083 29.1 12.5 25 199-223 68-93 (97)
369 2xv5_A Lamin-A/C; structural p 79.8 10 0.00034 30.1 8.5 14 214-227 44-57 (74)
370 3u0c_A Invasin IPAB, 62 kDa an 79.8 37 0.0012 31.1 19.1 26 137-162 117-142 (201)
371 3vem_A Helicase protein MOM1; 79.6 19 0.00065 30.9 10.6 21 61-81 40-60 (115)
372 2a3d_A Protein (de novo three- 79.6 8.4 0.00029 29.1 7.4 57 76-140 4-68 (73)
373 3aon_A V-type sodium ATPase su 79.5 42 0.0014 31.6 17.0 27 140-166 147-173 (217)
374 1wlq_A Geminin; coiled-coil; 2 79.3 15 0.00051 29.8 9.3 69 42-118 9-81 (83)
375 1t98_A KICB protein, chromosom 79.2 37 0.0013 32.9 13.6 6 117-122 184-189 (287)
376 3sjb_C Golgi to ER traffic pro 79.2 5.7 0.0002 32.9 7.0 14 175-188 56-69 (93)
377 3uux_B Mitochondrial division 79.2 9.7 0.00033 36.8 9.7 73 48-120 151-226 (242)
378 3ter_A Mammalian stromal inter 79.1 20 0.00068 31.7 10.9 14 151-164 59-72 (136)
379 2odv_A Plectin 1, HD1; plakin 79.1 46 0.0016 31.8 22.5 23 206-228 200-222 (235)
380 1lq7_A Alpha3W; three helix bu 79.0 4.6 0.00016 30.1 5.7 15 214-228 52-66 (67)
381 2yy0_A C-MYC-binding protein; 79.0 3.7 0.00013 30.5 5.3 23 134-156 23-45 (53)
382 3ryc_E Stathmin-4; alpha-tubul 78.9 35 0.0012 30.4 13.8 22 46-67 43-64 (143)
383 1gs9_A Apolipoprotein E, APOE4 78.7 6.2 0.00021 36.0 7.9 53 46-98 24-83 (165)
384 3d5a_X RF1, peptide chain rele 78.3 8.4 0.00029 39.4 9.5 88 135-222 1-95 (354)
385 3kdq_A Uncharacterized conserv 78.2 38 0.0013 30.4 13.8 19 142-160 82-100 (154)
386 1kmi_Z CHEZ, chemotaxis protei 78.2 28 0.00095 33.0 12.7 8 205-212 156-163 (214)
387 1lwu_C Fibrinogen gamma chain; 78.2 4.7 0.00016 40.8 7.6 6 262-267 133-138 (323)
388 1g8x_A Myosin II heavy chain f 77.7 1.1E+02 0.0038 35.4 20.3 8 177-184 928-935 (1010)
389 1sfc_B Protein (syntaxin 1A), 77.6 11 0.00037 30.2 8.3 34 198-231 44-77 (83)
390 3thf_A Protein shroom; coiled- 77.4 46 0.0016 30.9 23.2 22 55-76 21-42 (190)
391 3rmi_A Chorismate mutase prote 77.3 33 0.0011 29.2 13.3 34 132-165 14-47 (114)
392 2d4y_A HAP1, flagellar HOOK-as 77.1 70 0.0024 33.3 16.7 76 146-221 66-147 (463)
393 2lem_A Apolipoprotein A-I; lip 76.8 22 0.00077 33.4 11.6 8 126-133 90-97 (216)
394 1zbt_A RF-1, peptide chain rel 76.7 5.6 0.00019 40.9 7.7 15 108-122 19-33 (371)
395 2odv_A Plectin 1, HD1; plakin 76.7 54 0.0018 31.3 23.5 19 213-231 200-218 (235)
396 1hjb_A Ccaat/enhancer binding 76.7 6.8 0.00023 32.1 6.8 49 49-97 32-80 (87)
397 1zbt_A RF-1, peptide chain rel 76.6 8.8 0.0003 39.5 9.1 21 208-228 92-112 (371)
398 2p22_A Suppressor protein STP2 76.5 23 0.00078 32.6 11.1 17 208-224 68-84 (174)
399 2vs0_A Virulence factor ESXA; 76.5 26 0.00089 27.6 10.6 20 209-228 66-85 (97)
400 2xkj_E Topoisomerase IV; type 76.5 17 0.00059 40.8 12.1 42 187-228 701-742 (767)
401 2ve7_C Kinetochore protein NUF 76.5 3 0.0001 40.7 5.4 32 199-230 172-203 (250)
402 3ra3_A P1C; coiled coil domain 76.5 1.3 4.3E-05 27.8 1.7 28 61-88 1-28 (28)
403 4dzn_A Coiled-coil peptide CC- 76.3 5.5 0.00019 25.8 4.8 30 169-198 3-32 (33)
404 2ycu_A Non muscle myosin 2C, a 76.3 1.5 5.2E-05 50.8 3.8 152 46-197 839-995 (995)
405 1deb_A APC protein, adenomatou 76.3 15 0.00052 26.9 7.7 50 118-167 5-54 (54)
406 1lwu_C Fibrinogen gamma chain; 76.3 5.3 0.00018 40.4 7.4 58 172-229 2-59 (323)
407 3opc_A Uncharacterized protein 76.0 40 0.0014 29.5 14.9 110 51-160 6-125 (154)
408 2inr_A DNA topoisomerase 4 sub 75.9 22 0.00074 38.1 12.3 111 51-166 374-497 (514)
409 1joc_A EEA1, early endosomal a 75.9 14 0.00048 31.9 9.1 60 103-165 1-60 (125)
410 4ani_A Protein GRPE; chaperone 75.7 52 0.0018 31.2 13.7 89 124-212 60-156 (213)
411 1naf_A ADP-ribosylation factor 75.6 40 0.0014 30.5 12.3 98 53-150 32-142 (158)
412 3a2a_A Voltage-gated hydrogen 75.6 8.7 0.0003 28.7 6.4 43 186-228 8-50 (58)
413 1n7s_B Syntaxin 1A; neuronal s 75.5 25 0.00086 26.9 10.0 65 167-231 4-68 (68)
414 1gd2_E Transcription factor PA 75.5 19 0.00066 28.2 8.9 66 41-106 3-68 (70)
415 4dci_A Uncharacterized protein 75.4 28 0.00096 31.3 11.1 74 47-120 23-105 (150)
416 1ykh_B RNA polymerase II holoe 75.3 9 0.00031 33.7 7.7 92 32-125 30-129 (132)
417 1gl2_B Syntaxin 7; membrane pr 75.3 25 0.00084 26.8 9.4 62 170-231 4-65 (65)
418 3d5a_X RF1, peptide chain rele 75.3 13 0.00043 38.1 9.9 88 106-194 3-95 (354)
419 3vp9_A General transcriptional 75.2 3.4 0.00012 34.3 4.6 73 51-123 19-92 (92)
420 3s9g_A Protein hexim1; cyclin 75.1 22 0.00077 29.6 9.4 62 140-204 33-94 (104)
421 1kd8_B GABH BLL, GCN4 acid bas 75.1 6.6 0.00023 26.8 5.1 35 53-87 1-35 (36)
422 1wlq_A Geminin; coiled-coil; 2 74.9 17 0.00057 29.5 8.4 55 133-187 27-81 (83)
423 1gs9_A Apolipoprotein E, APOE4 74.6 50 0.0017 29.9 14.7 132 42-185 20-160 (165)
424 4f61_I Stathmin-like domain R4 74.5 63 0.0022 31.1 26.3 200 26-228 23-224 (240)
425 2xcs_B DNA gyrase subunit B, D 74.5 47 0.0016 36.9 14.7 115 51-166 557-680 (692)
426 1jnm_A Proto-oncogene C-JUN; B 74.5 4.5 0.00015 30.8 4.9 42 49-90 18-59 (62)
427 1t2k_D Cyclic-AMP-dependent tr 74.4 9 0.00031 28.9 6.6 40 58-97 20-59 (61)
428 3euh_A Protein KICB, chromosom 74.4 20 0.00067 37.2 10.9 141 56-196 123-265 (440)
429 3b5n_B Protein SSO1; snare com 74.3 26 0.00088 27.0 9.3 65 167-231 2-66 (69)
430 1gmj_A ATPase inhibitor; coile 74.3 14 0.00048 30.0 7.9 55 49-103 26-80 (84)
431 3hd7_B Syntaxin-1A; membrane p 74.3 21 0.00073 30.0 9.6 87 149-235 2-88 (109)
432 3f1i_H Hepatocyte growth facto 74.2 37 0.0013 28.2 10.9 91 96-186 1-98 (98)
433 3kqg_A Langerin, C-type lectin 74.2 3.4 0.00012 37.0 4.9 45 155-199 3-47 (182)
434 3vmx_A Voltage-gated hydrogen 74.1 14 0.00047 27.0 7.0 42 187-228 2-43 (48)
435 1joc_A EEA1, early endosomal a 74.1 14 0.00048 32.0 8.6 63 175-238 4-66 (125)
436 3a5c_G V-type ATP synthase sub 74.0 56 0.0019 31.0 13.6 168 50-218 13-189 (223)
437 2w6b_A RHO guanine nucleotide 74.0 20 0.00068 26.7 7.9 47 173-219 8-54 (56)
438 2zxx_A Geminin; coiled-coil, c 74.0 19 0.00063 29.0 8.5 56 132-187 22-77 (79)
439 3uux_B Mitochondrial division 73.9 20 0.00067 34.6 10.2 76 62-141 151-226 (242)
440 3sjb_C Golgi to ER traffic pro 73.8 6.7 0.00023 32.5 6.0 65 142-206 21-87 (93)
441 1hjb_A Ccaat/enhancer binding 73.8 25 0.00086 28.7 9.5 62 111-172 17-78 (87)
442 3s9g_A Protein hexim1; cyclin 73.6 24 0.00082 29.5 9.3 57 119-175 33-89 (104)
443 3u06_A Protein claret segregat 73.6 7.2 0.00025 40.6 7.8 58 44-101 1-58 (412)
444 1jth_B Syntaxin 1A; coiled-coi 73.4 26 0.0009 27.4 9.4 70 167-236 2-71 (77)
445 1m5i_A APC protein; coiled-coi 73.3 45 0.0015 28.8 11.8 103 125-227 9-111 (125)
446 3rrk_A V-type ATPase 116 kDa s 73.2 77 0.0026 31.5 20.0 152 73-224 59-276 (357)
447 3mxz_A Tubulin-specific chaper 73.2 35 0.0012 29.3 10.8 103 129-231 7-109 (116)
448 1kd8_A GABH AIV, GCN4 acid bas 73.2 5.4 0.00019 27.2 4.3 35 53-87 1-35 (36)
449 3f1i_H Hepatocyte growth facto 73.2 39 0.0013 28.1 13.3 89 104-192 2-96 (98)
450 2fcw_A Alpha-2-macroglobulin r 73.1 29 0.001 29.5 9.9 77 150-228 23-99 (109)
451 2js5_A Uncharacterized protein 73.1 19 0.00066 28.3 8.2 58 138-195 4-65 (71)
452 4abm_A Charged multivesicular 73.1 32 0.0011 27.5 9.8 77 141-230 3-79 (79)
453 1u2m_A Histone-like protein HL 73.0 1.8 6.2E-05 38.0 2.7 104 125-231 11-114 (143)
454 1qvr_A CLPB protein; coiled co 72.9 44 0.0015 37.6 14.7 114 52-165 379-509 (854)
455 1yke_B RNA polymerase II holoe 72.8 15 0.00051 33.0 8.7 73 133-205 53-129 (151)
456 1t7s_A BAG-1 cochaperone; stru 72.7 13 0.00045 32.8 8.0 112 56-168 15-132 (137)
457 4i0x_B ESAT-6-like protein MAB 72.7 24 0.00084 28.8 9.5 85 138-222 12-100 (103)
458 4gfh_A DNA topoisomerase 2; to 72.6 5 0.00017 47.3 6.9 171 51-223 990-1177(1177)
459 3m3w_A Pacsin3, protein kinase 72.5 78 0.0027 31.2 21.5 175 49-226 47-245 (320)
460 4akg_A Glutathione S-transfera 72.4 62 0.0021 41.5 17.0 114 47-165 2124-2240(2695)
461 2wt7_A Proto-oncogene protein 72.4 11 0.00036 28.8 6.6 40 58-97 21-60 (63)
462 2c5k_T Syntaxin TLG1, T-snare 72.4 13 0.00043 30.9 7.5 84 142-228 8-93 (95)
463 1ykh_B RNA polymerase II holoe 72.3 24 0.00083 30.9 9.8 66 147-212 53-129 (132)
464 1oxz_A ADP-ribosylation factor 72.0 47 0.0016 30.8 12.1 99 53-151 48-159 (186)
465 4g2k_A General control protein 71.5 44 0.0015 28.9 10.7 91 51-141 12-125 (125)
466 3csx_A Putative uncharacterize 71.5 13 0.00044 30.1 7.0 63 137-199 15-81 (81)
467 2gd5_A Charged multivesicular 71.4 46 0.0016 30.2 12.0 93 42-147 3-95 (179)
468 3vmx_A Voltage-gated hydrogen 71.4 13 0.00043 27.1 6.2 42 58-99 2-43 (48)
469 1yke_B RNA polymerase II holoe 71.3 25 0.00084 31.6 9.8 66 147-212 53-129 (151)
470 3he5_A Synzip1; heterodimeric 71.2 17 0.00059 25.5 6.7 45 177-221 5-49 (49)
471 3ehh_A Sensor kinase (YOCF pro 71.0 35 0.0012 30.5 11.1 93 49-141 6-107 (218)
472 2vs0_A Virulence factor ESXA; 70.9 22 0.00077 28.0 8.7 82 88-169 9-92 (97)
473 1cxz_B Protein (PKN); protein- 70.9 9 0.00031 31.4 6.1 67 86-153 19-86 (86)
474 2ycu_A Non muscle myosin 2C, a 70.9 5.1 0.00018 46.4 6.5 148 54-203 844-994 (995)
475 2cly_A ATP synthase B chain, m 70.8 53 0.0018 31.1 12.4 127 72-204 82-211 (214)
476 2fup_A Hypothetical protein PA 70.8 47 0.0016 28.9 11.6 101 69-170 9-115 (157)
477 1zvu_A Topoisomerase IV subuni 70.7 29 0.00099 38.7 12.0 112 51-166 325-445 (716)
478 4fm3_A Uncharacterized hypothe 70.6 45 0.0015 27.9 10.4 81 87-167 6-94 (98)
479 3caz_A BAR protein; thermo-aci 70.4 70 0.0024 29.9 19.6 147 75-226 19-172 (294)
480 3d5k_A OPRM, outer membrane pr 70.3 97 0.0033 31.4 15.8 105 104-208 132-237 (474)
481 1zxa_A CGMP-dependent protein 70.0 6.6 0.00022 30.7 4.8 41 192-232 14-54 (67)
482 2pih_A Protein YMCA; regulate 69.9 59 0.002 28.8 14.2 111 83-205 6-116 (151)
483 3a2a_A Voltage-gated hydrogen 69.8 8.4 0.00029 28.8 5.1 44 56-99 7-50 (58)
484 1gu4_A CAAT/enhancer binding p 69.7 28 0.00097 27.8 8.7 62 111-172 17-78 (78)
485 3fav_B ESAT-6, 6 kDa early sec 69.6 20 0.00069 28.4 8.1 82 127-208 2-92 (94)
486 2fcw_A Alpha-2-macroglobulin r 69.4 52 0.0018 28.0 10.7 64 105-168 23-98 (109)
487 1hx1_B BAG-1, BAG-family molec 69.4 54 0.0018 28.1 11.3 96 54-153 5-109 (114)
488 1gk6_A Vimentin; intermediate 69.4 24 0.00082 26.5 7.9 52 169-220 1-52 (59)
489 1pl5_A Regulatory protein SIR4 69.3 15 0.00051 31.2 7.3 72 48-123 69-140 (142)
490 1ecm_A Endo-oxabicyclic transi 69.3 48 0.0016 27.5 12.5 84 131-214 6-93 (109)
491 3sja_C Golgi to ER traffic pro 69.1 19 0.00065 27.9 7.2 52 148-199 3-56 (65)
492 2xv5_A Lamin-A/C; structural p 68.8 31 0.0011 27.3 8.7 53 135-187 3-55 (74)
493 1yc9_A VCEC, multidrug resista 68.6 99 0.0034 30.9 16.1 106 103-208 117-223 (442)
494 2q13_A DCC-interacting protein 68.5 1E+02 0.0035 31.0 26.4 179 50-228 18-242 (385)
495 2wvr_A Geminin; DNA replicatio 68.4 25 0.00084 33.1 9.2 56 132-187 103-158 (209)
496 4dzn_A Coiled-coil peptide CC- 68.4 11 0.00039 24.4 4.8 28 54-81 3-30 (33)
497 1uix_A RHO-associated kinase; 68.4 42 0.0014 26.4 9.8 66 51-116 2-67 (71)
498 3fav_A ESAT-6-like protein ESX 68.3 28 0.00096 28.1 8.9 82 134-215 4-94 (101)
499 2gtv_X CM, chorismate mutase; 68.3 52 0.0018 27.5 11.1 88 131-218 4-103 (104)
500 4i0x_B ESAT-6-like protein MAB 68.3 32 0.0011 28.1 9.3 91 149-239 9-103 (103)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.00 E-value=3.2e-07 Score=87.60 Aligned_cols=48 Identities=10% Similarity=0.180 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010679 50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI 97 (504)
Q Consensus 50 ~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L 97 (504)
.|..++..+..++..+..+...|..++..++.++..+..++..+...+
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 50 (284)
T 1c1g_A 3 AIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKL 50 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555444444444444444433
No 2
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.82 E-value=4.6e-08 Score=114.06 Aligned_cols=128 Identities=9% Similarity=0.084 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 010679 68 ENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVARE 147 (504)
Q Consensus 68 e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerq 147 (504)
.+.+|+.++.+|+++|+..+++...|...+..++..++.++.+|+.++++++....+++.++.++..++.++.++..+++
T Consensus 922 ~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~ 1001 (1080)
T 2dfs_A 922 LHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELH 1001 (1080)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555444444444444433333344444555444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 010679 148 ELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDH 201 (504)
Q Consensus 148 eL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el 201 (504)
++..+.+.|++++++++. +|+..+..|++|.+.|+++++.++..+.+.
T Consensus 1002 ~~~ke~~~lee~~~~~~~------~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~ 1049 (1080)
T 2dfs_A 1002 QTQTEKKTIEEWADKYKH------ETEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444433332 233445555566666665555554433333
No 3
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=98.77 E-value=2.3e-06 Score=84.44 Aligned_cols=108 Identities=12% Similarity=0.179 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHH----
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKT---- 124 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~e---- 124 (504)
+.++.+|..+..++..|-.++..|..++..++.++..++.++..+..++.. ++.++..+..++.+.+..+..
T Consensus 14 Q~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~----~e~~i~~~~~ri~~~~~~l~~v~~~ 89 (256)
T 3na7_A 14 SHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSK----NEQTLQDTNAKIASIQKKMSEIKSE 89 (256)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHccCCH
Confidence 344444444444444444444445555555544555555554444444433 555666666666666666542
Q ss_pred --HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 125 --AEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDL 160 (504)
Q Consensus 125 --le~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~EL 160 (504)
+..+..||+.++.++..+..++.++..+++.++.++
T Consensus 90 kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l 127 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQ 127 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234444444444444444444444444444443333
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.75 E-value=1.6e-08 Score=119.09 Aligned_cols=47 Identities=19% Similarity=0.290 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010679 52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG 98 (504)
Q Consensus 52 EqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~ 98 (504)
+.++..+.+++..+..++.+++..+.+++.++..+++++..+..++.
T Consensus 856 ~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~ 902 (1184)
T 1i84_S 856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQ 902 (1184)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555554444443
No 5
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.75 E-value=1.5e-08 Score=119.44 Aligned_cols=49 Identities=20% Similarity=0.202 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI 97 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L 97 (504)
..++++|+.+..++..++..+..++.++..|++++..++.++......+
T Consensus 860 ~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l 908 (1184)
T 1i84_S 860 QAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELY 908 (1184)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777766666666666666666666555555444433
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=98.57 E-value=7.1e-06 Score=80.90 Aligned_cols=58 Identities=21% Similarity=0.191 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHH
Q 010679 62 MQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK 123 (504)
Q Consensus 62 Iq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ 123 (504)
+|.+..++.+|...+..+..+|..+..++..++..+.. .+.++..+..++.+++.++.
T Consensus 13 LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~----~~~~l~d~~~~~~~~e~~i~ 70 (256)
T 3na7_A 13 ISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILN----LEEEKLALKLQVSKNEQTLQ 70 (256)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555555544 33334444444444444433
No 7
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=98.43 E-value=3.6e-05 Score=72.45 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 010679 59 HVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAE 121 (504)
Q Consensus 59 ~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaE 121 (504)
.++|........++...+..++.+|...+..=..|..++.......+++++.|..++..|+.+
T Consensus 9 ~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E 71 (189)
T 2v71_A 9 KEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYE 71 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555555555555555444444444433333444444444444444444
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.43 E-value=3.4e-06 Score=98.47 Aligned_cols=72 Identities=14% Similarity=0.111 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 010679 138 EAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSE-LESLRQEYHHCRGTYEYEKKFYNDHLESLQVME 209 (504)
Q Consensus 138 ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~E-IeaLrqELq~LR~eLe~~kk~~~el~eqlqeme 209 (504)
++.++..++.+|+.++++|+++++++..+.+.+++...+ .+.|++++..|+++...++.++++++..+.+.+
T Consensus 978 e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~ 1050 (1080)
T 2dfs_A 978 EAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQA 1050 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444443333222111 234444444555555555555555554444433
No 9
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=98.37 E-value=6.7e-05 Score=70.65 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 010679 82 ELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAK 117 (504)
Q Consensus 82 ELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~k 117 (504)
++..++.++...+..-..+.++++.+|..+..++..
T Consensus 25 ~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~ 60 (189)
T 2v71_A 25 SFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRD 60 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333
No 10
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.35 E-value=4.6e-05 Score=96.64 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 010679 73 AATHGTLRQELAAAQHELQILHGQ 96 (504)
Q Consensus 73 e~qi~~LkqELa~lqqEL~~L~~~ 96 (504)
.++++.|+.+|+..+.+|+..+++
T Consensus 1933 ~~~V~~l~~~L~~~~~~L~~k~~e 1956 (3245)
T 3vkg_A 1933 EAQVKDLQVSLAQKNRELDVKNEQ 1956 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 11
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=98.18 E-value=0.00069 Score=59.60 Aligned_cols=62 Identities=11% Similarity=0.095 Sum_probs=33.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010679 169 QIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP 230 (504)
Q Consensus 169 ql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle 230 (504)
++.+|.+++.+.-.-.+.|...|-.+++.++..+-..++.-...+++.-|-+.++..|+-.+
T Consensus 99 KLrELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl~mYR 160 (167)
T 4gkw_A 99 KLGELEADLKEKDSMVESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKIAHYR 160 (167)
T ss_dssp HTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHH
Confidence 34444444444444444445555555555555555555555556666666777777666543
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.06 E-value=2.1e-05 Score=85.33 Aligned_cols=52 Identities=12% Similarity=-0.034 Sum_probs=26.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679 180 LRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 231 (504)
Q Consensus 180 LrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~ 231 (504)
+++++++..++++.++++..+++++++++.+++.++.+|++.+++++.+++.
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 528 RRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444555555555555555555555555555555543
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.00 E-value=5.2e-05 Score=82.25 Aligned_cols=37 Identities=11% Similarity=0.052 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 010679 176 ELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNY 212 (504)
Q Consensus 176 EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L 212 (504)
++++++.+++..++.++.++++...+.++++++++++
T Consensus 545 ~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 545 ENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444444444444444444444443
No 14
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=97.98 E-value=0.0037 Score=57.06 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010679 177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 229 (504)
Q Consensus 177 IeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekl 229 (504)
+..|+.+++++..+|...+..+..+.+.+..+-..|..|...+-.|..+|..+
T Consensus 100 v~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~ 152 (155)
T 2efr_A 100 VTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARL 152 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 34444444455545544454455555544444444444444444444444443
No 15
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=97.96 E-value=0.0011 Score=60.37 Aligned_cols=96 Identities=10% Similarity=0.105 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 010679 127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQ 206 (504)
Q Consensus 127 ~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlq 206 (504)
.+..++..|..++.+-...+.+.+.++..+..+|..|..-+ ..| ...-....+.+....+..+..+.+++.
T Consensus 55 ~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasL------FeE---AN~MVa~ar~~~~~~e~r~~~L~~ql~ 125 (154)
T 2ocy_A 55 DRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL------FDE---ANNMVADARKEKYAIEILNKRLTEQLR 125 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666666666666555432 111 111222233334444555666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Q 010679 207 VMEKNYITMATEVEKLRAELMNAPN 231 (504)
Q Consensus 207 emek~L~sme~EiekLraELekle~ 231 (504)
+.+..|..+...+..|+.-+.+++.
T Consensus 126 e~~~~l~~lq~ql~~LK~v~~~m~~ 150 (154)
T 2ocy_A 126 EKDTLLDTLTLQLKNLKKVMHSLDN 150 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7777777777777777766665543
No 16
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=97.96 E-value=0.0018 Score=59.60 Aligned_cols=52 Identities=19% Similarity=0.233 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHh
Q 010679 177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMA----TEVEKLRAELMN 228 (504)
Q Consensus 177 IeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme----~EiekLraELek 228 (504)
|..|..|+++++..+.........+.+.+..+++....++ =++..++..++.
T Consensus 99 i~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~eq 154 (168)
T 3o0z_A 99 ITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQ 154 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3333333333333333333334444444444444443333 334444444443
No 17
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=97.92 E-value=0.0055 Score=53.91 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=10.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 010679 182 QEYHHCRGTYEYEKKFYNDHLESLQVM 208 (504)
Q Consensus 182 qELq~LR~eLe~~kk~~~el~eqlqem 208 (504)
.-+--||.+|+.++-+..+.+..+..+
T Consensus 119 ~TiG~LrKELEdEklK~~E~MdSFE~L 145 (167)
T 4gkw_A 119 ETIGILRKELENEKLKAAENMDSFEKL 145 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444443333
No 18
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=97.90 E-value=0.0017 Score=59.77 Aligned_cols=64 Identities=13% Similarity=0.160 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010679 104 RELQMRNLTEKIAKMEAELKT----AEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDV 167 (504)
Q Consensus 104 ~E~eL~eL~eki~kLEaEL~e----le~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~el 167 (504)
.+..+++|++++..|+..... +..|...|++-+.........+.+|+.+++.|..+|.+++...
T Consensus 46 ~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~ 113 (168)
T 3o0z_A 46 LESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNL 113 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555544222 2234444444444444444444555555555555555544433
No 19
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=97.84 E-value=0.014 Score=59.88 Aligned_cols=56 Identities=11% Similarity=0.210 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 106 LQMRNLTEKIAKMEAELKT-AEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQ 161 (504)
Q Consensus 106 ~eL~eL~eki~kLEaEL~e-le~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq 161 (504)
.++......+.++-.+|+. +.-|+..|...-..|..|+..+.++..++++|+.+|.
T Consensus 102 ~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 102 AKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDID 158 (390)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444432 3334444433333555566666666666666666663
No 20
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=97.81 E-value=0.012 Score=53.79 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 172 ALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLR 223 (504)
Q Consensus 172 ~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLr 223 (504)
.|..+|+.|..+|...+..+......+......+..|...+..+..+|..|+
T Consensus 102 kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~~ 153 (155)
T 2efr_A 102 KLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARLK 153 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 3344444444455444444444445555555566666667777777776664
No 21
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=97.58 E-value=0.0065 Score=55.30 Aligned_cols=26 Identities=4% Similarity=0.034 Sum_probs=9.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHH
Q 010679 184 YHHCRGTYEYEKKFYNDHLESLQVME 209 (504)
Q Consensus 184 Lq~LR~eLe~~kk~~~el~eqlqeme 209 (504)
...|+.++...+..+..+..++.++.
T Consensus 117 ~~~L~~ql~e~~~~l~~lq~ql~~LK 142 (154)
T 2ocy_A 117 NKRLTEQLREKDTLLDTLTLQLKNLK 142 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334443333
No 22
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=97.50 E-value=0.0097 Score=52.61 Aligned_cols=41 Identities=12% Similarity=0.101 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010679 190 TYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP 230 (504)
Q Consensus 190 eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle 230 (504)
.|..+...+.+..+....+......+..++..|+.+|+.++
T Consensus 84 ~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 84 KVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444455555555555555555555543
No 23
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=97.46 E-value=0.0019 Score=56.53 Aligned_cols=89 Identities=16% Similarity=0.325 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPV 128 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~L 128 (504)
...+..|+.++.+|..+..++.+|..++..++..++..+.. ++.|+.....+
T Consensus 16 ~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~K----------------------------yE~E~~~r~~~ 67 (119)
T 3ol1_A 16 DLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK----------------------------LQEEMLQREEA 67 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------------------hHHHHHHHHHH
Confidence 45677777777777777777777777777666554444432 23334444566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 129 KLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT 165 (504)
Q Consensus 129 kaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~ 165 (504)
+.++..++.++.++...+.+|+.+++.|+.+|.-++.
T Consensus 68 E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk 104 (119)
T 3ol1_A 68 ENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888888999999999988877654
No 24
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=97.45 E-value=0.003 Score=67.05 Aligned_cols=111 Identities=11% Similarity=0.073 Sum_probs=54.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHH-H
Q 010679 46 PPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK-T 124 (504)
Q Consensus 46 p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~-e 124 (504)
|.==+|+.-|..++..+.+..++++...+++.....+. .+-+..+...|+. ...+..++...+.++-.||+ .
T Consensus 46 PSGCrLQglLdkqErDltkrINELKnqLEdlsKnsKds---eqy~k~~~E~Lr~----rq~q~~dNdNtynE~S~ELRRr 118 (562)
T 3ghg_A 46 PSGCRMKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDS---HSLTTNIMEILRG----DFSSANNRDNTYNRVSEDLRSR 118 (562)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH---HHHHHHHHHTTSS----HHHHHHHHHHHHHHTTHHHHHH
T ss_pred CcccchhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhH---HHHHHHHHHHHHH----HHHhhhccchhHHHHHHHHHHH
Confidence 33345555555555544444333333333332222222 2222333333332 22222344444444444444 3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 125 AEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRA 163 (504)
Q Consensus 125 le~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l 163 (504)
++.|+.+|+.....|..|+..+.++..+|++|+.+|.-.
T Consensus 119 IqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiq 157 (562)
T 3ghg_A 119 IEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIK 157 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666555667777777777777777777777543
No 25
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=97.45 E-value=0.0014 Score=69.45 Aligned_cols=13 Identities=15% Similarity=0.107 Sum_probs=5.9
Q ss_pred HHHHHHHHHhccc
Q 010679 219 VEKLRAELMNAPN 231 (504)
Q Consensus 219 iekLraELekle~ 231 (504)
.+.++++|+++..
T Consensus 178 Y~~~QKQLeQv~a 190 (562)
T 3ghg_A 178 YEDQQKQLEQVIA 190 (562)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhh
Confidence 3444444444443
No 26
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=97.40 E-value=0.0024 Score=54.67 Aligned_cols=62 Identities=21% Similarity=0.263 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010679 107 QMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ 168 (504)
Q Consensus 107 eL~eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elq 168 (504)
++.+|++++.++++++..+.-|++.++-.+.+...-+..|..+..++++|..+|..++.+.+
T Consensus 46 ~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 46 LIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33444444444555555556666666666666666666666666666666666666555443
No 27
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=97.39 E-value=0.01 Score=52.41 Aligned_cols=43 Identities=19% Similarity=0.218 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQI 92 (504)
Q Consensus 50 ~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~ 92 (504)
..+.++.....+|..|.....+.......|......+..++..
T Consensus 10 ~~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~ 52 (129)
T 2fxo_A 10 EREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKND 52 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443333333333333
No 28
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=97.35 E-value=0.0043 Score=54.84 Aligned_cols=74 Identities=12% Similarity=0.135 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 010679 126 EPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDV-QQIPALLSELESLRQEYHHCRGTYEYEKKFYN 199 (504)
Q Consensus 126 e~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~el-qql~~L~~EIeaLrqELq~LR~eLe~~kk~~~ 199 (504)
...+.||..++..++.|..+++.+..+...|+..|...+... .++..++..|..|..+|.+++.+++.....+.
T Consensus 32 ~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq 106 (129)
T 3tnu_B 32 RNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQ 106 (129)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666666666665544432 12344455566666666666665554433333
No 29
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=97.32 E-value=0.0087 Score=50.80 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 198 YNDHLESLQVMEKNYITMATEVEKLRAELM 227 (504)
Q Consensus 198 ~~el~eqlqemek~L~sme~EiekLraELe 227 (504)
+......+.+.++.....+.++..|.+.|.
T Consensus 67 L~ea~~kLee~ek~~~~aE~ev~~L~Rriq 96 (101)
T 3u1c_A 67 LHKSEDSLLFAEENAAKAESEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444443
No 30
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=97.29 E-value=0.0041 Score=55.16 Aligned_cols=93 Identities=15% Similarity=0.189 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 010679 126 EPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ-QIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLES 204 (504)
Q Consensus 126 e~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elq-ql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eq 204 (504)
...+.||..++..++.|..+++.+..+...|+..|..++.... ++...+..|..|..+|.+++.+++.....+.+
T Consensus 34 ~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~---- 109 (131)
T 3tnu_A 34 QSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKI---- 109 (131)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 3455555556666666666666666666666666655444321 23444555566666666666655544333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010679 205 LQVMEKNYITMATEVEKLRAE 225 (504)
Q Consensus 205 lqemek~L~sme~EiekLraE 225 (504)
+-.-...++.||..-++-
T Consensus 110 ---Ll~vKl~Ld~EIatYRkL 127 (131)
T 3tnu_A 110 ---LLDVKTRLEQEIATYRRL 127 (131)
T ss_dssp ---HHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHh
Confidence 333333444555544443
No 31
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=97.20 E-value=0.014 Score=49.58 Aligned_cols=47 Identities=6% Similarity=-0.004 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLR 223 (504)
Q Consensus 177 IeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLr 223 (504)
|..+..+++.+...|...+..+.+..+...+.+..+..|.+.|+-|+
T Consensus 53 ~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 53 LRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33334444444444444445555555555666666666666666554
No 32
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=97.18 E-value=0.022 Score=49.67 Aligned_cols=19 Identities=21% Similarity=0.403 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010679 103 ERELQMRNLTEKIAKMEAE 121 (504)
Q Consensus 103 e~E~eL~eL~eki~kLEaE 121 (504)
-.+..|..|..+|..+..+
T Consensus 17 ~ye~~I~~LR~qid~~~~e 35 (119)
T 3ol1_A 17 LYEEEMRELRRQVDQLTND 35 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544443
No 33
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=97.13 E-value=0.0077 Score=61.74 Aligned_cols=23 Identities=4% Similarity=0.023 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHH
Q 010679 172 ALLSELESLRQEYHHCRGTYEYE 194 (504)
Q Consensus 172 ~L~~EIeaLrqELq~LR~eLe~~ 194 (504)
.|+..|+.++.+|++|+..|+.+
T Consensus 138 ~Lq~~l~~q~~kiqRLE~~Id~c 160 (390)
T 1deq_A 138 LLQKNVRDQLVDMKRLEVDIDIK 160 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555544443
No 34
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=97.13 E-value=0.0064 Score=52.00 Aligned_cols=39 Identities=10% Similarity=0.239 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 010679 145 AREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQE 183 (504)
Q Consensus 145 erqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqE 183 (504)
.+.....++++|+.++.+.+.++.+|+.|+++++..+..
T Consensus 39 aL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~D 77 (110)
T 2v4h_A 39 ALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKAD 77 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444443333
No 35
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=97.12 E-value=0.3 Score=51.73 Aligned_cols=32 Identities=9% Similarity=0.168 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010679 199 NDHLESLQVMEKNYITMATEVEKLRAELMNAP 230 (504)
Q Consensus 199 ~el~eqlqemek~L~sme~EiekLraELekle 230 (504)
..|.++++++++.|...+..|..|..+..++.
T Consensus 238 e~LLkkh~~le~~l~~~~~~I~~L~~qA~~l~ 269 (450)
T 3r6n_A 238 LEQIKELEKEREKILEYKRQVQNLVNKSKKIV 269 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45556666667777777777777777666654
No 36
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=97.09 E-value=0.22 Score=49.39 Aligned_cols=46 Identities=22% Similarity=0.329 Sum_probs=20.6
Q ss_pred CCChHHHHHHHHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 010679 45 MPPPEVMEQKIASQHVEMQK----LATE-NQRLAATHGTLRQELAAAQHEL 90 (504)
Q Consensus 45 ~p~~~~LEqeLe~~~eEIq~----Le~e-~qrLe~qi~~LkqELa~lqqEL 90 (504)
.++.+.|.++|....++++. ...+ .+++..+++.++++|.-..+++
T Consensus 10 ~~~~e~lr~~l~~~~eel~~~L~P~~~~l~~~l~~~le~lr~~L~Py~~el 60 (273)
T 3s84_A 10 AKDSEKLKEEIGKELEELRARLLPHANEVSQKIGDNLRELQQRLEPYADQL 60 (273)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555444444432 2222 2345555556666555444443
No 37
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=97.08 E-value=0.018 Score=48.82 Aligned_cols=53 Identities=17% Similarity=0.166 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010679 177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 229 (504)
Q Consensus 177 IeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekl 229 (504)
|..|+..++.++.+++.....+......+...++.....+.++..|.+.|.-+
T Consensus 46 i~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqll 98 (101)
T 3u59_A 46 QQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444555555555555555555443
No 38
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=97.07 E-value=0.025 Score=47.87 Aligned_cols=49 Identities=6% Similarity=0.092 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 175 SELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLR 223 (504)
Q Consensus 175 ~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLr 223 (504)
..|..+..+++.+...+...+..+....+.....+..+.+|.+.|+-|+
T Consensus 51 kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllE 99 (101)
T 3u59_A 51 KKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344444444444444444444555555555556666666666665553
No 39
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=97.01 E-value=0.0038 Score=51.56 Aligned_cols=49 Identities=22% Similarity=0.319 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 116 AKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAH 164 (504)
Q Consensus 116 ~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~ 164 (504)
.+++.|+.....++.++..++.++..+.-.+.+|+.+++.|+.+|.-++
T Consensus 35 ~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 35 EKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777777888899999999999999999999999999999887654
No 40
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=96.99 E-value=0.025 Score=47.63 Aligned_cols=57 Identities=9% Similarity=0.127 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679 175 SELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 231 (504)
Q Consensus 175 ~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~ 231 (504)
.+|..++.+...+..+-+...+.+..+.-++.++.+.+.++...+.-....|++|++
T Consensus 39 ~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~K 95 (96)
T 3q8t_A 39 ENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKLKK 95 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344445555555555444555555666666666666666666666666666666654
No 41
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=96.97 E-value=0.027 Score=48.28 Aligned_cols=74 Identities=12% Similarity=0.226 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 010679 134 KSKTEAQNLVVAREELIAKVHQLTQDL-QRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQV 207 (504)
Q Consensus 134 qLr~ELqeL~aerqeL~aqvq~L~~EL-q~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqe 207 (504)
..+....++...+.+|..+++.++.+. .+++....+|..++.+|..-..|++.++..++........+...+..
T Consensus 19 ~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~ 93 (107)
T 2no2_A 19 MARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAE 93 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444222 23344444555555556655555555555555444444444444433
No 42
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=96.97 E-value=0.018 Score=60.60 Aligned_cols=30 Identities=13% Similarity=0.194 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010679 201 HLESLQVMEKNYITMATEVEKLRAELMNAP 230 (504)
Q Consensus 201 l~eqlqemek~L~sme~EiekLraELekle 230 (504)
.+++++++|.++.+++.+|+.++++|+.++
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 441 GQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 335666777777777777777777777653
No 43
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=96.97 E-value=0.28 Score=46.87 Aligned_cols=30 Identities=13% Similarity=0.216 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 197 FYNDHLESLQVMEKNYITMATEVEKLRAEL 226 (504)
Q Consensus 197 ~~~el~eqlqemek~L~sme~EiekLraEL 226 (504)
...++...+..+...+......++.+...+
T Consensus 180 ~~~~i~~~~~~~~~~~~e~s~~i~~i~~~i 209 (213)
T 3g67_A 180 LLQEVRNSLDTSKESLSEKSAEIDSATKVL 209 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333444444443333
No 44
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=96.96 E-value=0.29 Score=47.05 Aligned_cols=15 Identities=20% Similarity=0.222 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHhc
Q 010679 215 MATEVEKLRAELMNA 229 (504)
Q Consensus 215 me~EiekLraELekl 229 (504)
+.+.+..|...|.++
T Consensus 235 ~~~~~~~L~~~l~~~ 249 (251)
T 2fic_A 235 MSKLNQNLNDVLVGL 249 (251)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhh
Confidence 455666666666655
No 45
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=96.89 E-value=0.32 Score=46.44 Aligned_cols=38 Identities=16% Similarity=0.216 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 191 YEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 191 Le~~kk~~~el~eqlqemek~L~sme~EiekLraELek 228 (504)
++.....+.++.+.++++...+..+...+++....+..
T Consensus 167 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~e~s~~i~~ 204 (213)
T 3g67_A 167 LQNMVRFMENNVKLLQEVRNSLDTSKESLSEKSAEIDS 204 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444433
No 46
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=96.82 E-value=0.008 Score=50.09 Aligned_cols=66 Identities=20% Similarity=0.263 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010679 104 RELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQ 169 (504)
Q Consensus 104 ~E~eL~eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqq 169 (504)
++.+|.+|++.+.+++.++..+.-|+..++--+.+...-++.|..+..+++.|..++..++.+..+
T Consensus 21 kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~ 86 (94)
T 3jsv_C 21 KQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNK 86 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 566677777778888888777888888888888888777777877777777777777666655443
No 47
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=96.79 E-value=0.32 Score=44.84 Aligned_cols=29 Identities=14% Similarity=0.122 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 010679 170 IPALLSELESLRQEYHHCRGTYEYEKKFY 198 (504)
Q Consensus 170 l~~L~~EIeaLrqELq~LR~eLe~~kk~~ 198 (504)
+..+..+.+.++.++...+..++.+....
T Consensus 141 v~~ll~~h~~~~~el~~~~~~i~~l~~~~ 169 (213)
T 1cun_A 141 IQGLLKKHEAFETDFTVHKDRVNDVCANG 169 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555554444444444333
No 48
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=96.79 E-value=0.0054 Score=54.59 Aligned_cols=38 Identities=8% Similarity=0.108 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAH 164 (504)
Q Consensus 127 ~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~ 164 (504)
.+..++..|..++.+-+..+.+.+.++..+..+|..|.
T Consensus 43 ~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LT 80 (135)
T 2e7s_A 43 DRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 80 (135)
T ss_dssp THHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444455555555555555554443
No 49
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=96.67 E-value=0.38 Score=44.59 Aligned_cols=58 Identities=7% Similarity=0.023 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 010679 170 IPALLSELESLRQEYHHCRGTYEYEKKFYNDHLES----LQVMEKNYITMATEVEKLRAELM 227 (504)
Q Consensus 170 l~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eq----lqemek~L~sme~EiekLraELe 227 (504)
+..+..+.+.++.+|......++.+......+... ...+...+..+....+.|...++
T Consensus 144 v~~ll~kh~~~~~el~~~~~~i~~l~~~g~~L~~~~~~~~~~i~~~~~~l~~~W~~L~~~~~ 205 (216)
T 1u5p_A 144 VQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAA 205 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445444444444433333333221 12233444444444444444433
No 50
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=96.66 E-value=0.067 Score=46.10 Aligned_cols=30 Identities=13% Similarity=0.221 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 010679 170 IPALLSELESLRQEYHHCRGTYEYEKKFYN 199 (504)
Q Consensus 170 l~~L~~EIeaLrqELq~LR~eLe~~kk~~~ 199 (504)
+.+|+.||..|.++|+++..+++.+++...
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 344444444454544444444444443333
No 51
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=96.65 E-value=0.01 Score=64.88 Aligned_cols=123 Identities=14% Similarity=0.200 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----hHH
Q 010679 102 SERELQMRNLTEKIAKMEAELKTAEP----VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI----PAL 173 (504)
Q Consensus 102 ae~E~eL~eL~eki~kLEaEL~ele~----LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql----~~L 173 (504)
.+.+.+..+|..++.+++++.+.... ....+..|..++..++.+...|..+..++++++++|....... ..|
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l 410 (575)
T 2i1j_A 331 ERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKL 410 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------------------------------------
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 35566677777777777777654332 2222334444455555555555555555555555444322111 112
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679 174 LSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 231 (504)
Q Consensus 174 ~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~ 231 (504)
.+++.++..++.++..+. ..-.++...+++++..+....++.+.+|..+..
T Consensus 411 ~~~~~~~~~~~~~~~~~~-------~~~~~e~~~~~~~~~~a~~~~~~~~~~l~~~~~ 461 (575)
T 2i1j_A 411 EDEIRAKQEEVSRIQQEV-------ELKDSETRRLQEEVEDARRKQDEAAAALLAATT 461 (575)
T ss_dssp --------------------------------------CHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 223333333333333332 222223333444444455555566666655433
No 52
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=96.62 E-value=0.098 Score=43.93 Aligned_cols=29 Identities=7% Similarity=0.190 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 133 QKSKTEAQNLVVAREELIAKVHQLTQDLQ 161 (504)
Q Consensus 133 eqLr~ELqeL~aerqeL~aqvq~L~~ELq 161 (504)
..|..++.+.+..+.+.+.++..+..+|.
T Consensus 29 ~~L~~~l~eE~~~R~~aE~~~~~ie~ElE 57 (97)
T 2eqb_B 29 KRLREDIAKENELRTKAEEEADKLNKEVE 57 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444443333
No 53
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=96.58 E-value=0.019 Score=58.98 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010679 203 ESLQVMEKNYITMATEVEKLRAE 225 (504)
Q Consensus 203 eqlqemek~L~sme~EiekLraE 225 (504)
..+......++.|......|..+
T Consensus 264 ~~I~~Ai~al~~l~~~W~~m~~~ 286 (346)
T 2nrj_A 264 KALDDAINALTYMSTQWHDLDSQ 286 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 54
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=96.57 E-value=0.38 Score=47.39 Aligned_cols=19 Identities=0% Similarity=0.247 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010679 208 MEKNYITMATEVEKLRAEL 226 (504)
Q Consensus 208 mek~L~sme~EiekLraEL 226 (504)
+...|..+....+.|....
T Consensus 296 i~~~l~~L~~~w~~l~~~w 314 (323)
T 3edv_A 296 IKEKLLQLTEKRKEMIDKW 314 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443
No 55
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=96.55 E-value=0.07 Score=54.68 Aligned_cols=68 Identities=15% Similarity=0.163 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHH
Q 010679 72 LAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK----TAEPVKLEFQKSKTEA 139 (504)
Q Consensus 72 Le~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~----ele~LkaELeqLr~EL 139 (504)
|...+..|+..+...+.+...+...|..++..+......+......+...|. .+..|+.+|++++.++
T Consensus 121 l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I 192 (346)
T 2nrj_A 121 LKEGITDLRGEIQQNQKYAQQLIEELTKLRDSIGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGSV 192 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444333333444444444433332 2345555555544443
No 56
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=96.54 E-value=0.014 Score=48.64 Aligned_cols=35 Identities=9% Similarity=0.256 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 010679 148 ELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQ 182 (504)
Q Consensus 148 eL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrq 182 (504)
.....+++|+.++.+.+.++.+++.|+++++..+.
T Consensus 20 ~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~ 54 (94)
T 3jsv_C 20 AKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKA 54 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444554444444444444444433333
No 57
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}
Probab=96.53 E-value=0.53 Score=44.11 Aligned_cols=132 Identities=8% Similarity=0.078 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHH
Q 010679 68 ENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLE-FQKSKTEAQNLVVAR 146 (504)
Q Consensus 68 e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~LkaE-LeqLr~ELqeL~aer 146 (504)
..+.+...|..+..+|+.....|..+......+..+.. ..+.+++..+......+..+..+ ...|. .+.++..+.
T Consensus 39 ~ve~llkkH~~le~ei~~~~~~v~~l~~~a~~l~~~~~---~~i~~rl~~l~~~~~~L~~~a~~R~~~L~-~L~~f~~~~ 114 (210)
T 3pdy_A 39 SVEAQLGSHRGLHQSIEEFRAKIERARSDEGQLSPATR---GAYRDCLGRLDLQYAKLLNSSKARLRSLE-SLHSFVAAA 114 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 36677778888888888888888888776655443211 12444445554444433322211 11222 455555555
Q ss_pred HHHHHHHHHHHHHHHHHH--HhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 010679 147 EELIAKVHQLTQDLQRAH--TDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLE 203 (504)
Q Consensus 147 qeL~aqvq~L~~ELq~l~--~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~e 203 (504)
.++...+.+.+..+.... .++..+..++...+.++.||...+..+..+......+.+
T Consensus 115 ~~~~~Wl~eke~~~~s~d~g~~~~~v~~l~~k~~~f~~el~~~~~~v~~l~~~~~~Ll~ 173 (210)
T 3pdy_A 115 TKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLR 173 (210)
T ss_dssp HHHHHHHHHHHHHHHHSCCSTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccccCCCchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 566665555554443211 123334555555566666666555555555544444443
No 58
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=96.53 E-value=0.15 Score=53.93 Aligned_cols=43 Identities=14% Similarity=0.195 Sum_probs=19.6
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 45 MPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQI 92 (504)
Q Consensus 45 ~p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~ 92 (504)
.+.+..+.++++..+...+.. .+...++.++.+++.++.||..
T Consensus 290 ilt~~elkqrqeee~r~~qew-----~~~hp~~~Aer~~e~a~ael~~ 332 (551)
T 2b5u_A 290 VLSPDQVKQRQDEENRRQQEW-----DATHPVEAAERNYERARAELNQ 332 (551)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH-----HHHCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHh-----hhcCcHHHHHHHHHHHHHHHHH
Confidence 456666666655444333322 2233334444444444444443
No 59
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=96.52 E-value=0.09 Score=45.06 Aligned_cols=33 Identities=30% Similarity=0.308 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 010679 116 AKMEAELKTAEPVKLEFQKSKTEAQNLVVAREE 148 (504)
Q Consensus 116 ~kLEaEL~ele~LkaELeqLr~ELqeL~aerqe 148 (504)
.+++.++..++.++.+|.....+|..++..+..
T Consensus 47 ~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~ 79 (107)
T 2no2_A 47 RKTQEQLEVLESLKQELATSQRELQVLQGSLET 79 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555554443333
No 60
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=96.51 E-value=0.064 Score=46.18 Aligned_cols=25 Identities=20% Similarity=0.209 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 133 QKSKTEAQNLVVAREELIAKVHQLT 157 (504)
Q Consensus 133 eqLr~ELqeL~aerqeL~aqvq~L~ 157 (504)
++|+.||.+|..+++++.++++.|.
T Consensus 74 qeLqgEI~~Lnq~Lq~a~ae~erlr 98 (121)
T 3mq7_A 74 EELEGEITTLNHKLQDASAEVERLR 98 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 61
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=96.51 E-value=0.036 Score=58.36 Aligned_cols=69 Identities=13% Similarity=0.192 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhHHHHHHHHHHHHHHHHHhhHHHHH
Q 010679 127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT-DVQQIPALLSELESLRQEYHHCRGTYEYEK 195 (504)
Q Consensus 127 ~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~-elqql~~L~~EIeaLrqELq~LR~eLe~~k 195 (504)
.|+.+|.+++..+.+++.+.......|-.|+..|.+... .+++|+++..||..|.++|++++.+++.++
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 401 LLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666666666666666666655566666655543222 234677777888888888888888877654
No 62
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=96.49 E-value=0.031 Score=48.24 Aligned_cols=17 Identities=18% Similarity=0.083 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010679 105 ELQMRNLTEKIAKMEAE 121 (504)
Q Consensus 105 E~eL~eL~eki~kLEaE 121 (504)
..++..|.+++..-|..
T Consensus 44 k~qV~~L~~~~q~sE~~ 60 (112)
T 1x79_B 44 SHQISALVLRAQASEIL 60 (112)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 63
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=96.49 E-value=0.048 Score=48.79 Aligned_cols=10 Identities=40% Similarity=0.600 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 010679 217 TEVEKLRAEL 226 (504)
Q Consensus 217 ~EiekLraEL 226 (504)
.++.+|+.++
T Consensus 124 ~~~~~le~~~ 133 (138)
T 3hnw_A 124 KNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 64
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=96.46 E-value=0.054 Score=46.70 Aligned_cols=28 Identities=11% Similarity=0.185 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679 204 SLQVMEKNYITMATEVEKLRAELMNAPN 231 (504)
Q Consensus 204 qlqemek~L~sme~EiekLraELekle~ 231 (504)
++..+....+.+..+|.+|..+=+.|..
T Consensus 78 qL~~Lt~~Re~V~~eL~rLQ~eNd~L~G 105 (112)
T 1x79_B 78 QMAVLMQSREQVSEELVRLQKDNDSLQG 105 (112)
T ss_dssp HHHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 3444444444445555555555444443
No 65
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=96.44 E-value=0.72 Score=44.60 Aligned_cols=15 Identities=7% Similarity=0.262 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 010679 150 IAKVHQLTQDLQRAH 164 (504)
Q Consensus 150 ~aqvq~L~~ELq~l~ 164 (504)
...++.|..+|.+++
T Consensus 110 R~~R~~l~~~I~kLk 124 (234)
T 3plt_A 110 RDRKEKITDEIAHLK 124 (234)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 333444444444443
No 66
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=96.44 E-value=0.17 Score=53.90 Aligned_cols=18 Identities=11% Similarity=0.224 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010679 61 EMQKLATENQRLAATHGT 78 (504)
Q Consensus 61 EIq~Le~e~qrLe~qi~~ 78 (504)
+|..+..++..++.+...
T Consensus 40 el~~f~keRa~iE~eYAk 57 (486)
T 3haj_A 40 DLMNCLHERARIEKAYAQ 57 (486)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444445555555443
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.43 E-value=0.032 Score=59.02 Aligned_cols=38 Identities=8% Similarity=-0.011 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYIT 214 (504)
Q Consensus 177 IeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~s 214 (504)
.+..+.++++++++.+.+++.+.++..++.++...++.
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (487)
T 3oja_A 437 WDMYQHKETQLAEENARLKKLNGEADLALASANATLQE 474 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHH
Confidence 34444444444444444444444444444444444433
No 68
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=96.42 E-value=0.12 Score=44.52 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010679 63 QKLATENQRLAATHGTLRQELAA 85 (504)
Q Consensus 63 q~Le~e~qrLe~qi~~LkqELa~ 85 (504)
..|...+.+|..+++.++.++..
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~ 28 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEH 28 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555444443
No 69
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=96.39 E-value=0.33 Score=45.39 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010679 71 RLAATHGTLRQELAAAQHELQ 91 (504)
Q Consensus 71 rLe~qi~~LkqELa~lqqEL~ 91 (504)
.+..++..++.+|......+.
T Consensus 50 ~ll~~H~~l~~ei~~~~~~~~ 70 (218)
T 3fb2_A 50 ALLERHQEHRTEIDARAGTFQ 70 (218)
T ss_dssp HHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHH
Confidence 344444555555544333333
No 70
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=96.39 E-value=1 Score=45.63 Aligned_cols=17 Identities=6% Similarity=0.151 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010679 51 MEQKIASQHVEMQKLAT 67 (504)
Q Consensus 51 LEqeLe~~~eEIq~Le~ 67 (504)
|-..|......|..+..
T Consensus 39 l~~~~n~~~~~l~~~i~ 55 (341)
T 3zx6_A 39 LAKSIERLRRSLMRTVG 55 (341)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444443333
No 71
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=96.37 E-value=0.43 Score=44.62 Aligned_cols=18 Identities=6% Similarity=0.180 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010679 139 AQNLVVAREELIAKVHQL 156 (504)
Q Consensus 139 LqeL~aerqeL~aqvq~L 156 (504)
+.+......++...+++.
T Consensus 110 ~~~F~~~~~e~~~Wl~ek 127 (218)
T 3edu_A 110 LHRYFYTGAEILGLIDEK 127 (218)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 72
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=96.32 E-value=0.9 Score=44.51 Aligned_cols=26 Identities=12% Similarity=0.138 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHH
Q 010679 172 ALLSELESLRQEYHHCRGTYEYEKKF 197 (504)
Q Consensus 172 ~L~~EIeaLrqELq~LR~eLe~~kk~ 197 (504)
.+..+.+.++.++...+..++.+...
T Consensus 252 ~ll~~h~~~~~el~~~~~~v~~l~~~ 277 (322)
T 1u4q_A 252 GLLKKHEAFETDFTVHKDRVNDVCAN 277 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443333
No 73
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=96.32 E-value=0.056 Score=45.18 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=29.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 47 PPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQ 81 (504)
Q Consensus 47 ~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~Lkq 81 (504)
+...|+.++....++++.|+.+|..|+.++..+++
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~ 44 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKILLAELEQLKG 44 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46789999999999999999999999888876643
No 74
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=96.31 E-value=0.12 Score=54.86 Aligned_cols=6 Identities=50% Similarity=1.497 Sum_probs=2.7
Q ss_pred CCCCCC
Q 010679 262 YEDGYG 267 (504)
Q Consensus 262 y~~~y~ 267 (504)
|-.|||
T Consensus 274 Yk~GFG 279 (464)
T 1m1j_B 274 YKRGFG 279 (464)
T ss_dssp HHHCEE
T ss_pred HHHHhC
Confidence 444444
No 75
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=96.27 E-value=0.18 Score=42.31 Aligned_cols=24 Identities=8% Similarity=0.235 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 137 TEAQNLVVAREELIAKVHQLTQDL 160 (504)
Q Consensus 137 ~ELqeL~aerqeL~aqvq~L~~EL 160 (504)
.+|.++..+...+..++..++.+.
T Consensus 25 ~eL~~lEke~~~l~~el~~le~E~ 48 (96)
T 3q8t_A 25 QELEDVEKNRKVVAENLEKVQAEA 48 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 76
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=96.24 E-value=0.99 Score=44.05 Aligned_cols=12 Identities=0% Similarity=-0.061 Sum_probs=5.6
Q ss_pred HHHHHHHHHHhc
Q 010679 218 EVEKLRAELMNA 229 (504)
Q Consensus 218 EiekLraELekl 229 (504)
-++.|...++.+
T Consensus 253 ~~~~l~~~~~~i 264 (305)
T 2efl_A 253 CLDGIVKAAESI 264 (305)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhc
Confidence 344455555444
No 77
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=96.24 E-value=0.14 Score=54.48 Aligned_cols=12 Identities=8% Similarity=0.241 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 010679 72 LAATHGTLRQEL 83 (504)
Q Consensus 72 Le~qi~~LkqEL 83 (504)
+..++++|+..|
T Consensus 98 V~~~LqeLe~~l 109 (464)
T 1m1j_B 98 VKPVLRDLKDRV 109 (464)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHhHHHHHHHHH
Confidence 333444443333
No 78
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=96.23 E-value=0.018 Score=50.34 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 010679 147 EELIAKVHQLTQDLQR 162 (504)
Q Consensus 147 qeL~aqvq~L~~ELq~ 162 (504)
.+|..+|..|+.+|..
T Consensus 43 ~ql~~~i~~Le~eL~e 58 (120)
T 3i00_A 43 LQLKGHVSELEADLAE 58 (120)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555555543
No 79
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=96.20 E-value=0.024 Score=48.56 Aligned_cols=29 Identities=14% Similarity=0.249 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 200 DHLESLQVMEKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 200 el~eqlqemek~L~sme~EiekLraELek 228 (504)
.+.+.+..+++++..+..++++++.+|..
T Consensus 81 ~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 81 TLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555555544
No 80
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=96.19 E-value=0.71 Score=44.62 Aligned_cols=27 Identities=11% Similarity=0.179 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 132 FQKSKTEAQNLVVAREELIAKVHQLTQ 158 (504)
Q Consensus 132 LeqLr~ELqeL~aerqeL~aqvq~L~~ 158 (504)
|...+..++.++..++.|..++..|+.
T Consensus 99 IR~~E~svqp~R~~R~~l~~~I~kLk~ 125 (234)
T 3plt_A 99 IRNIEASVQPSRDRKEKITDEIAHLKY 125 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 344445556666666666666666554
No 81
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=96.17 E-value=0.47 Score=50.43 Aligned_cols=8 Identities=38% Similarity=0.414 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 010679 203 ESLQVMEK 210 (504)
Q Consensus 203 eqlqemek 210 (504)
+.+|+|++
T Consensus 231 ~~lQ~lEe 238 (486)
T 3haj_A 231 EQCQQFEE 238 (486)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444443
No 82
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=96.17 E-value=1 Score=43.91 Aligned_cols=13 Identities=8% Similarity=0.069 Sum_probs=6.2
Q ss_pred HHHHHHHHHHhcc
Q 010679 218 EVEKLRAELMNAP 230 (504)
Q Consensus 218 EiekLraELekle 230 (504)
.++.|+..|+.+.
T Consensus 246 ~~~~l~~~~~~id 258 (301)
T 2efk_A 246 CLEGMKVAANAVD 258 (301)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcC
Confidence 3444555555443
No 83
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=96.17 E-value=0.1 Score=47.12 Aligned_cols=31 Identities=19% Similarity=-0.038 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 010679 173 LLSELESLRQEYHHCRGTYEYEKKFYNDHLE 203 (504)
Q Consensus 173 L~~EIeaLrqELq~LR~eLe~~kk~~~el~e 203 (504)
++.|+..|+-++..++..+..+++++..|.+
T Consensus 101 l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~ 131 (152)
T 3a7p_A 101 LNAALISGTIENNVLQQKLSDLKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433
No 84
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=96.16 E-value=0.8 Score=42.27 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 69 NQRLAATHGTLRQELAAAQHELQILHG 95 (504)
Q Consensus 69 ~qrLe~qi~~LkqELa~lqqEL~~L~~ 95 (504)
.+.+...|..++.+|...+..+..+..
T Consensus 35 v~~ll~~h~~~~~ei~~~~~~~~~~~~ 61 (214)
T 1s35_A 35 AEQLLQQHAGIKDEIDGHQDSYQRVKE 61 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 344455555666666555555444443
No 85
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=96.16 E-value=0.025 Score=49.46 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010679 105 ELQMRNLTEKIAKMEAE 121 (504)
Q Consensus 105 E~eL~eL~eki~kLEaE 121 (504)
+..+..|..+|..|+++
T Consensus 39 q~~v~ql~~~i~~Le~e 55 (120)
T 3i00_A 39 QRVVLQLKGHVSELEAD 55 (120)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 86
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=96.15 E-value=0.03 Score=50.62 Aligned_cols=9 Identities=22% Similarity=0.117 Sum_probs=3.4
Q ss_pred HHHHHHHHh
Q 010679 220 EKLRAELMN 228 (504)
Q Consensus 220 ekLraELek 228 (504)
.++..+.++
T Consensus 135 ~rk~qEAe~ 143 (152)
T 3a7p_A 135 KKTEKETEA 143 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333334333
No 87
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=96.09 E-value=0.35 Score=51.17 Aligned_cols=20 Identities=10% Similarity=0.225 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHhhhcc
Q 010679 80 RQELAAAQHELQILHGQIGG 99 (504)
Q Consensus 80 kqELa~lqqEL~~L~~~L~~ 99 (504)
+..++.++.++++++++|..
T Consensus 313 ~hp~~~Aer~~e~a~ael~~ 332 (551)
T 2b5u_A 313 THPVEAAERNYERARAELNQ 332 (551)
T ss_dssp HCHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHH
Confidence 35667777777777777654
No 88
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=96.07 E-value=0.52 Score=39.28 Aligned_cols=44 Identities=14% Similarity=0.223 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQIL 93 (504)
Q Consensus 50 ~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L 93 (504)
.+|.+|+.....|-.|..+..++..-+..+...+..-.+-+..-
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~ri~~aig~~d~ri~~NtqaI~~N 46 (114)
T 2xzr_A 3 QIEDKIEEILSKIYHIENEIARIKKLIGAIDGRVTRNTQSIEKN 46 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchHHHHHHHHhhhhHHHHhhHHHHHhc
Confidence 45666666666666666666666666665555554444444433
No 89
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=96.06 E-value=1.9 Score=45.64 Aligned_cols=31 Identities=13% Similarity=0.128 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 010679 205 LQVMEKNYITMATEVEKLRAELMNAPNVDRR 235 (504)
Q Consensus 205 lqemek~L~sme~EiekLraELekle~~~~~ 235 (504)
.++|.+++..++++|...+..|..|.+..+.
T Consensus 237 ~e~LLkkh~~le~~l~~~~~~I~~L~~qA~~ 267 (450)
T 3r6n_A 237 LLEQIKELEKEREKILEYKRQVQNLVNKSKK 267 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888889999999999888775544
No 90
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=96.06 E-value=0.13 Score=43.76 Aligned_cols=35 Identities=9% Similarity=0.051 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 010679 178 ESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNY 212 (504)
Q Consensus 178 eaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L 212 (504)
+.|...++.+..+++.+.+.+..+.+++.+++.+|
T Consensus 73 ~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l 107 (117)
T 2zqm_A 73 AELKEKIETLEVRLNALERQEKKLNEKLKELTAQI 107 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444333
No 91
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=96.05 E-value=0.7 Score=46.26 Aligned_cols=24 Identities=4% Similarity=0.098 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 60 VEMQKLATENQRLAATHGTLRQEL 83 (504)
Q Consensus 60 eEIq~Le~e~qrLe~qi~~LkqEL 83 (504)
++|.....++..++.+....-..|
T Consensus 37 ~el~~f~keRa~iE~eYak~L~kL 60 (337)
T 2x3v_A 37 NDLMSCVQERAKIEKAYAQQLTDW 60 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555655554433333
No 92
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=96.02 E-value=0.47 Score=40.82 Aligned_cols=13 Identities=15% Similarity=0.276 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 010679 108 MRNLTEKIAKMEA 120 (504)
Q Consensus 108 L~eL~eki~kLEa 120 (504)
.+.|+.+...|..
T Consensus 5 ~rdL~~~~~~L~~ 17 (111)
T 2v66_B 5 NRDLQADNQRLKY 17 (111)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444443333
No 93
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=96.00 E-value=0.013 Score=52.11 Aligned_cols=8 Identities=25% Similarity=0.164 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 010679 200 DHLESLQV 207 (504)
Q Consensus 200 el~eqlqe 207 (504)
.+.+++.+
T Consensus 107 ~L~~ql~e 114 (135)
T 2e7s_A 107 RLTEQLRE 114 (135)
T ss_dssp HHHHTTTH
T ss_pred HHHHHHHH
Confidence 33333333
No 94
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=95.95 E-value=0.0056 Score=66.93 Aligned_cols=38 Identities=13% Similarity=0.112 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 126 EPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRA 163 (504)
Q Consensus 126 e~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l 163 (504)
..++.+....+.+|.+.......|..+++.++.+-..|
T Consensus 345 ~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l 382 (575)
T 2i1j_A 345 RQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEEL 382 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------------------
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555544444444444444444443333
No 95
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=95.93 E-value=1.4 Score=43.04 Aligned_cols=13 Identities=8% Similarity=0.013 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 010679 211 NYITMATEVEKLR 223 (504)
Q Consensus 211 ~L~sme~EiekLr 223 (504)
.++.|...++.+.
T Consensus 246 ~~~~l~~~~~~id 258 (301)
T 2efk_A 246 CLEGMKVAANAVD 258 (301)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcC
Confidence 3344445444443
No 96
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=95.90 E-value=0.58 Score=38.45 Aligned_cols=80 Identities=20% Similarity=0.165 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 146 REELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAE 225 (504)
Q Consensus 146 rqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraE 225 (504)
+.+|..+.++|+.-+..++.+..+ -...|..++..|++.-..|+.++-...+++.++..+++...-++-.+..+..+
T Consensus 20 ~eeL~kQk~eL~~~l~~l~~e~~~---R~~~i~el~akidd~Lk~l~~EklAkldLE~RLsKtEKDkAiLELkLaE~~De 96 (101)
T 1d7m_A 20 REQLIKQKDQLNSLLASLESEGAE---REKRLRELEAKLDETLKNLELEKLARMELEARLAKTEKDRAILELKLAEAIDE 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh
Confidence 334444444444444444333211 11224444445555555555566666677777777777666666655555555
Q ss_pred HHh
Q 010679 226 LMN 228 (504)
Q Consensus 226 Lek 228 (504)
-+.
T Consensus 97 k~r 99 (101)
T 1d7m_A 97 KSK 99 (101)
T ss_dssp HHH
T ss_pred hhh
Confidence 443
No 97
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=95.89 E-value=0.93 Score=41.62 Aligned_cols=25 Identities=16% Similarity=0.208 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Q 010679 177 LESLRQEYHHCRGTYEYEKKFYNDH 201 (504)
Q Consensus 177 IeaLrqELq~LR~eLe~~kk~~~el 201 (504)
+..+..+++.+..+++.....+..+
T Consensus 141 v~~ll~~h~~~~~el~~~~~~i~~l 165 (213)
T 1cun_A 141 IQGLLKKHEAFETDFTVHKDRVNDV 165 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444333333333
No 98
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=95.89 E-value=0.15 Score=43.23 Aligned_cols=39 Identities=13% Similarity=0.171 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT 165 (504)
Q Consensus 127 ~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~ 165 (504)
.++.++++++.++.+|...+.++..++..+...+..+..
T Consensus 7 ~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 7 ELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455555666666666666666666666666665543
No 99
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=95.89 E-value=0.03 Score=50.15 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010679 127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDV 167 (504)
Q Consensus 127 ~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~el 167 (504)
.++.+++..+..+..+..+++.+..++..|+.+++++..+.
T Consensus 70 ~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEek 110 (146)
T 2xnx_M 70 AITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEK 110 (146)
T ss_dssp THHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 44455555555555555555555566666666666554443
No 100
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=95.83 E-value=0.26 Score=51.61 Aligned_cols=59 Identities=15% Similarity=0.205 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 105 ELQMRNLTEKIAKMEAELKT-AEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRA 163 (504)
Q Consensus 105 E~eL~eL~eki~kLEaEL~e-le~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l 163 (504)
+.+.......+.++-.+|+. +.-|+..|...-..|.-|+..+.++..+++.|+.+|...
T Consensus 99 ~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~q 158 (491)
T 1m1j_A 99 LEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIK 158 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555444442 334444444333556666666777777777777776543
No 101
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=95.79 E-value=0.12 Score=46.94 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010679 73 AATHGTLRQELAAAQHEL 90 (504)
Q Consensus 73 e~qi~~LkqELa~lqqEL 90 (504)
...-...+++|+.+--++
T Consensus 38 assDa~vrq~Ia~LP~eV 55 (152)
T 4fla_A 38 ASGDATVRQKIASLPQEV 55 (152)
T ss_dssp HHHHHHHHHHHHTSCGGG
T ss_pred ccchHHHHHHHHcCCccc
Confidence 333344455555444333
No 102
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=95.76 E-value=0.15 Score=42.74 Aligned_cols=25 Identities=4% Similarity=0.183 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 203 ESLQVMEKNYITMATEVEKLRAELM 227 (504)
Q Consensus 203 eqlqemek~L~sme~EiekLraELe 227 (504)
..+..+++++..+..++++++..|.
T Consensus 79 ~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 79 LREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 103
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=95.75 E-value=0.25 Score=44.09 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 196 KFYNDHLESLQVMEKNYITMATEV 219 (504)
Q Consensus 196 k~~~el~eqlqemek~L~sme~Ei 219 (504)
+.+.++++++.++++++..++.++
T Consensus 110 ~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 110 KEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344443333333
No 104
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=95.71 E-value=1.6 Score=43.52 Aligned_cols=50 Identities=24% Similarity=0.256 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhh
Q 010679 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQE---LAAAQHELQILHGQI 97 (504)
Q Consensus 48 ~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqE---La~lqqEL~~L~~~L 97 (504)
++.|+..++.+.+....+..+.++|..++..|... +..++.-|.+|....
T Consensus 5 ~~~l~~~~~~~~e~r~~lr~~~eql~~~i~~L~~~ap~W~~aq~al~rL~eq~ 57 (302)
T 3ibp_A 5 IASLSDSVSNAREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQC 57 (302)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHh
Confidence 34555555555555555555555555555555443 334455555555554
No 105
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=95.71 E-value=0.18 Score=42.74 Aligned_cols=10 Identities=10% Similarity=0.072 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 010679 144 VAREELIAKV 153 (504)
Q Consensus 144 aerqeL~aqv 153 (504)
.++.++...+
T Consensus 31 ~~i~~l~~~l 40 (112)
T 1l8d_A 31 NKIGDLKTAI 40 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 106
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=95.63 E-value=1.3 Score=43.54 Aligned_cols=20 Identities=5% Similarity=-0.039 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHhhHHHHH
Q 010679 176 ELESLRQEYHHCRGTYEYEK 195 (504)
Q Consensus 176 EIeaLrqELq~LR~eLe~~k 195 (504)
+.+.++.+|...+..++.+.
T Consensus 257 ~~~~~e~~l~~~~~~v~~l~ 276 (326)
T 3kbt_A 257 VHTAFERDVHLLGVQVQQFQ 276 (326)
T ss_dssp ----CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333
No 107
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=95.60 E-value=0.38 Score=47.68 Aligned_cols=20 Identities=10% Similarity=0.159 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010679 60 VEMQKLATENQRLAATHGTL 79 (504)
Q Consensus 60 eEIq~Le~e~qrLe~qi~~L 79 (504)
++|.....++..++.+....
T Consensus 46 ~el~~f~keRa~iE~eYak~ 65 (312)
T 3abh_A 46 SDLMNCLHERARIEKAYAQQ 65 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555443
No 108
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=95.59 E-value=0.15 Score=42.73 Aligned_cols=34 Identities=18% Similarity=0.157 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 010679 178 ESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKN 211 (504)
Q Consensus 178 eaLrqELq~LR~eLe~~kk~~~el~eqlqemek~ 211 (504)
..|...++.+..+++.+.+.+..+.+++.+++.+
T Consensus 68 ~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~ 101 (107)
T 1fxk_A 68 EELQEKLETLQLREKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444433
No 109
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=95.58 E-value=0.29 Score=50.58 Aligned_cols=133 Identities=19% Similarity=0.223 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPV 128 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~L 128 (504)
+.+-.+|...+.+.+....+.++|.++...+.++|+..++-++...+.+.-+ +.++ .++++..+---+.-..+..
T Consensus 122 e~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~e~~~k~~a~~af~~~~~~f----~~q~-~~~e~~~~~~~~~~~~~~~ 196 (373)
T 3hhm_B 122 EAVGKKLHEYNTQFQEKSREYDRLYEEYTRTSQEIQMKRTAIEAFNETIKIF----EEQC-QTQERYSKEYIEKFKREGN 196 (373)
T ss_dssp CGGGC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH-HHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH----HHHH-HHHHHHhhhhhhhhhhhcC
Confidence 3444555566666666777777777777777777776666555555544332 2222 1122111000000001111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHh
Q 010679 129 KLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRG 189 (504)
Q Consensus 129 kaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~ 189 (504)
..|+..+..-.+.|+..+++|....++|+++|.....+. .++..++..|+-+|..|+.
T Consensus 197 ~~e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~lkp~l~ql~k 254 (373)
T 3hhm_B 197 EKEIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEY---REIDKRMNSIKPDLIQLRK 254 (373)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhccChHHHHHHH
Confidence 223444444445555555555555555555554433332 3445566666666655554
No 110
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=95.55 E-value=1.5 Score=47.98 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 010679 210 KNYITMATEVEKLRAE 225 (504)
Q Consensus 210 k~L~sme~EiekLraE 225 (504)
++...|..||+.|+.+
T Consensus 567 ~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 567 KESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444555555555555
No 111
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=95.54 E-value=0.29 Score=51.28 Aligned_cols=12 Identities=17% Similarity=0.434 Sum_probs=6.2
Q ss_pred HHHHHHHHhccc
Q 010679 220 EKLRAELMNAPN 231 (504)
Q Consensus 220 ekLraELekle~ 231 (504)
+.++++|+++..
T Consensus 180 e~~QKqLeQv~a 191 (491)
T 1m1j_A 180 DNIQKHLTQASS 191 (491)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhhc
Confidence 445555555544
No 112
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=95.52 E-value=3.4 Score=46.00 Aligned_cols=23 Identities=17% Similarity=0.275 Sum_probs=12.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Q 010679 6 RIPPPHLRRPPPGPGMMHPDPFV 28 (504)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~ 28 (504)
+||+...=-++++-.|+-|.||-
T Consensus 328 ~VP~~~~L~~i~~~~lvk~~~~~ 350 (704)
T 2xs1_A 328 RVPDLKDLDPIGKATLVKSTPVN 350 (704)
T ss_dssp CCCCGGGSCCCCCCCCCCCCCCC
T ss_pred CCCCccccCCccCccccccCCCC
Confidence 46654222334555678777764
No 113
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.50 E-value=0.25 Score=41.49 Aligned_cols=30 Identities=13% Similarity=0.158 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 54 KIASQHVEMQKLATENQRLAATHGTLRQEL 83 (504)
Q Consensus 54 eLe~~~eEIq~Le~e~qrLe~qi~~LkqEL 83 (504)
+++.++++|..|+.++..+..++..|..+|
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l 35 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDI 35 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 444455555555444444444444443333
No 114
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=95.47 E-value=0.13 Score=46.43 Aligned_cols=36 Identities=11% Similarity=0.189 Sum_probs=15.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 180 LRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITM 215 (504)
Q Consensus 180 LrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sm 215 (504)
+..+|+++...++.....+.+|.+.+..+..+|.+|
T Consensus 85 ~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsL 120 (147)
T 2b9c_A 85 IESDLERAEERAELSEGKCAELEEELKTVTNNLKSL 120 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344444444444444444444444444444443
No 115
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=95.44 E-value=0.049 Score=53.87 Aligned_cols=35 Identities=9% Similarity=0.094 Sum_probs=19.1
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 42 FDMMPPPEVMEQKIASQHVEMQKLATENQRLAATH 76 (504)
Q Consensus 42 ~~~~p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi 76 (504)
|++-+.+..+-..+..+...|..+...+.+|...+
T Consensus 37 ~~~~~~~~~F~~~~~~I~~~I~~i~~~l~~L~~l~ 71 (279)
T 2xhe_B 37 AQPEPFMADFFNRVKRIRDNIEDIEQAIEQVAQLH 71 (279)
T ss_dssp ---CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666666666666666665555555444
No 116
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=95.41 E-value=0.67 Score=42.75 Aligned_cols=54 Identities=17% Similarity=0.220 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhh
Q 010679 134 KSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGT 190 (504)
Q Consensus 134 qLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~e 190 (504)
.+..-.+.|...+.+|......|..+|.....+. ..+..++.+|+-+|..|+..
T Consensus 93 ~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~---relERemnsLKPeL~qL~K~ 146 (170)
T 3l4q_C 93 RILLNSERLKSRIAEIHESRTKLEQELRAQASDN---REIDKRMNSLKPDLMQLRKI 146 (170)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhcCHHHHHHHHH
Confidence 3333344444444455555555555554333332 23445566666666555543
No 117
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=95.37 E-value=0.5 Score=47.74 Aligned_cols=20 Identities=10% Similarity=0.159 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010679 60 VEMQKLATENQRLAATHGTL 79 (504)
Q Consensus 60 eEIq~Le~e~qrLe~qi~~L 79 (504)
++|.....++..++.+....
T Consensus 46 ~el~~f~keRa~IE~eYak~ 65 (350)
T 3aco_A 46 SDLMNCLHERARIEKAYAQQ 65 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555443
No 118
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus}
Probab=95.35 E-value=0.88 Score=42.88 Aligned_cols=87 Identities=9% Similarity=0.083 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHH
Q 010679 69 NQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKL-EFQKSKTEAQNLVVARE 147 (504)
Q Consensus 69 ~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~Lka-ELeqLr~ELqeL~aerq 147 (504)
.+.+...|..++.+|......+..+...-..+... ....+.+++..+......+..+.. ....|. .+.+......
T Consensus 55 v~~ll~kh~~~e~ei~~~~~~v~~~~~~~~~~~~~---~~~~i~~~~~~l~~~~~~L~~~~~~R~~~Le-~l~~F~~~~~ 130 (224)
T 2iak_A 55 VESHLENHKNVHRAIEEFESSLKEAKISEIQMTAP---LKLSYTDKLHRLESQYAKLLNTSRNQERHLD-TLHNFVTRAT 130 (224)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHGGGCCTT---HHHHHHHHHHHHHHHHHHTTTHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 45556666666666666665555554332222211 112233444444444333322211 112222 4455555555
Q ss_pred HHHHHHHHHHHH
Q 010679 148 ELIAKVHQLTQD 159 (504)
Q Consensus 148 eL~aqvq~L~~E 159 (504)
++...+.+.+..
T Consensus 131 ~~~~Wi~eke~~ 142 (224)
T 2iak_A 131 NELIWLNEKEES 142 (224)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555544443
No 119
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=95.32 E-value=0.47 Score=42.47 Aligned_cols=14 Identities=7% Similarity=0.022 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 010679 54 KIASQHVEMQKLAT 67 (504)
Q Consensus 54 eLe~~~eEIq~Le~ 67 (504)
+|+.+...|-.|..
T Consensus 5 ~LTlLlG~l~~l~G 18 (158)
T 3tul_A 5 QLTLLLGKLMTLLG 18 (158)
T ss_dssp THHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh
Confidence 34455555544444
No 120
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=95.30 E-value=1.2 Score=48.64 Aligned_cols=18 Identities=11% Similarity=0.235 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHhcccc
Q 010679 215 MATEVEKLRAELMNAPNV 232 (504)
Q Consensus 215 me~EiekLraELekle~~ 232 (504)
.+.+.+.|+.||..|++.
T Consensus 565 ~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 565 FQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 578888899999888765
No 121
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=95.24 E-value=1.6 Score=40.73 Aligned_cols=8 Identities=13% Similarity=0.223 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 010679 215 MATEVEKL 222 (504)
Q Consensus 215 me~EiekL 222 (504)
+....+.|
T Consensus 203 l~~rW~~l 210 (218)
T 3fb2_A 203 VLDRWRRL 210 (218)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 122
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=95.23 E-value=0.23 Score=51.92 Aligned_cols=44 Identities=5% Similarity=0.015 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVE 220 (504)
Q Consensus 177 IeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~Eie 220 (504)
+..+..|+.+++..+......+..|++.+..++.+|+.+...|.
T Consensus 86 skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~ 129 (409)
T 1m1j_C 86 SKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIA 129 (409)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34444444444443333333333333333333333333333333
No 123
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=95.14 E-value=0.5 Score=46.83 Aligned_cols=35 Identities=11% Similarity=0.027 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679 197 FYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 231 (504)
Q Consensus 197 ~~~el~eqlqemek~L~sme~EiekLraELekle~ 231 (504)
....|.++.+.+++.|......|..|..+...+..
T Consensus 151 s~~~LLkkh~~le~~l~~~~~~i~~L~~~a~~l~~ 185 (283)
T 3pe0_A 151 RLEDLLQDAQDEKEQLNEYKGHLSGLAKRAKAVVQ 185 (283)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44556666777778888888888888888777754
No 124
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=95.13 E-value=2.5 Score=40.65 Aligned_cols=11 Identities=18% Similarity=0.289 Sum_probs=4.5
Q ss_pred HHHHHHHHHhc
Q 010679 219 VEKLRAELMNA 229 (504)
Q Consensus 219 iekLraELekl 229 (504)
++.++..++.+
T Consensus 237 ~~~~~~~~~~i 247 (276)
T 2v0o_A 237 HEEFINNMANT 247 (276)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHhC
Confidence 33444444443
No 125
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=95.12 E-value=3.9 Score=42.96 Aligned_cols=25 Identities=8% Similarity=0.069 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 135 SKTEAQNLVVAREELIAKVHQLTQD 159 (504)
Q Consensus 135 Lr~ELqeL~aerqeL~aqvq~L~~E 159 (504)
.+.++..+.+.++.+++++..+..+
T Consensus 361 ArNEItsaeSaInslqaqvSa~t~e 385 (602)
T 1cii_A 361 ARNKITSAESAVNSARNNLSARTNE 385 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 126
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=95.11 E-value=0.36 Score=51.25 Aligned_cols=41 Identities=24% Similarity=0.184 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 010679 81 QELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAE 121 (504)
Q Consensus 81 qELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaE 121 (504)
.+|+..+.||+++++.-++++++-+..+.+++++-..+++|
T Consensus 9 ~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~ae 49 (497)
T 3iox_A 9 AKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAE 49 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 34444444444444444444444444444444444444443
No 127
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=95.10 E-value=0.47 Score=49.61 Aligned_cols=48 Identities=6% Similarity=0.017 Sum_probs=22.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 46 PPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQIL 93 (504)
Q Consensus 46 p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L 93 (504)
|.-=.|+.-|...+..|..-..+++.+..+++.+..++..+.+.|...
T Consensus 20 PT~C~i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 20 PTTCGIADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp ECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555455555555555444443344444444444444444444444443
No 128
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=95.03 E-value=0.098 Score=42.38 Aligned_cols=60 Identities=17% Similarity=0.240 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHH
Q 010679 51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRN 110 (504)
Q Consensus 51 LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~e 110 (504)
|+.+-+.+..+++.++.+|+.|+.++..|+++|+..+.+-.+++.++..+...++.+|.+
T Consensus 4 l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~e 63 (79)
T 3cvf_A 4 MAAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFE 63 (79)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 344555666778888888888888888888888888877777666665544444444433
No 129
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=95.03 E-value=0.14 Score=44.91 Aligned_cols=30 Identities=10% Similarity=0.126 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 010679 177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQ 206 (504)
Q Consensus 177 IeaLrqELq~LR~eLe~~kk~~~el~eqlq 206 (504)
++-++..++.++..++.+++.+..+.+++.
T Consensus 90 ~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~ 119 (133)
T 1fxk_C 90 MESIKSQKNELESTLQKMGENLRAITDIMM 119 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444443333333333333333
No 130
>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}
Probab=95.03 E-value=1.4 Score=48.17 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=24.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 46 PPPEVMEQKIASQHVEMQKLATENQRLAATHGTL 79 (504)
Q Consensus 46 p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~L 79 (504)
.....|+++|+.++..++.++.+++.|++..+..
T Consensus 12 ~~~~eI~~~v~~l~~~~q~~e~~~k~Le~~Qe~F 45 (585)
T 1y1u_A 12 QKHLQINQRFEELRLITQDTENELKKLQQTQEYF 45 (585)
T ss_dssp CSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446778888888888888887777766655443
No 131
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=95.02 E-value=1.7 Score=38.16 Aligned_cols=51 Identities=8% Similarity=-0.015 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010679 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG 98 (504)
Q Consensus 48 ~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~ 98 (504)
...|+.-|+....+.+....++.+....+...+.+|..+..........+.
T Consensus 7 ~~~L~~ll~l~~~~ed~a~~~l~~a~~~~~~~~~~L~~L~~~~~~y~~~~~ 57 (150)
T 3ajw_A 7 HGALETLKDLAEKEVDDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRSNLN 57 (150)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777777777777777777777666666555543
No 132
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=95.00 E-value=0.21 Score=40.35 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 115 IAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTD 166 (504)
Q Consensus 115 i~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~e 166 (504)
...|++||+.-+.+..||..++.....+..++++.+.+.+.|..+|.+++.+
T Consensus 16 QSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~ 67 (81)
T 1wt6_A 16 QEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQER 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777777777766666666666665555544443
No 133
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=94.97 E-value=2.1 Score=39.11 Aligned_cols=12 Identities=25% Similarity=0.504 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 010679 111 LTEKIAKMEAEL 122 (504)
Q Consensus 111 L~eki~kLEaEL 122 (504)
..+++..|..++
T Consensus 53 ~~~k~~qlre~~ 64 (169)
T 3k29_A 53 YMQKIRQLREQL 64 (169)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333344444443
No 134
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=94.93 E-value=0.31 Score=39.63 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 58 QHVEMQKLATENQRLAATHGTLRQE 82 (504)
Q Consensus 58 ~~eEIq~Le~e~qrLe~qi~~LkqE 82 (504)
+..+|+.+...+.-|..++++|+++
T Consensus 11 LE~KIq~avdtI~lLqmEieELKek 35 (81)
T 2jee_A 11 LEAKVQQAIDTITLLQMEIEELKEK 35 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 135
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=94.92 E-value=3.2 Score=40.88 Aligned_cols=14 Identities=0% Similarity=-0.038 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 010679 69 NQRLAATHGTLRQE 82 (504)
Q Consensus 69 ~qrLe~qi~~LkqE 82 (504)
+..+..++..++++
T Consensus 48 l~~f~keRa~iE~e 61 (312)
T 3abh_A 48 LMNCLHERARIEKA 61 (312)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 136
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=94.90 E-value=2.2 Score=39.27 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010679 53 QKIASQHVEMQKLATENQRLAAT 75 (504)
Q Consensus 53 qeLe~~~eEIq~Le~e~qrLe~q 75 (504)
..++.+...|..+...+.+|...
T Consensus 9 ~~~~~i~~~i~~i~~~v~~L~~l 31 (196)
T 1fio_A 9 NKISQINRDLDKYDHTINQVDSL 31 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 137
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=94.88 E-value=2.8 Score=40.04 Aligned_cols=26 Identities=23% Similarity=0.189 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 54 KIASQHVEMQKLATENQRLAATHGTL 79 (504)
Q Consensus 54 eLe~~~eEIq~Le~e~qrLe~qi~~L 79 (504)
+++.+..++..++....+|..+....
T Consensus 53 ~Fe~~~~~f~~~e~~~~~l~k~~k~y 78 (251)
T 2fic_A 53 QFEQCVQNFNKQLTEGTRLQKDLRTY 78 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444333
No 138
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=94.83 E-value=1.4 Score=49.57 Aligned_cols=12 Identities=0% Similarity=-0.078 Sum_probs=5.0
Q ss_pred hHHHHHHHHHHH
Q 010679 48 PEVMEQKIASQH 59 (504)
Q Consensus 48 ~~~LEqeLe~~~ 59 (504)
+..|++....+.
T Consensus 337 ~~~i~~~w~~L~ 348 (863)
T 1sjj_A 337 VSDINNAWGGLE 348 (863)
T ss_dssp GGGHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444333
No 139
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=94.80 E-value=0.21 Score=39.77 Aligned_cols=55 Identities=16% Similarity=0.280 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHH
Q 010679 57 SQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNL 111 (504)
Q Consensus 57 ~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL 111 (504)
.+..+++.++.+|+.|+.++..|+++|+..+.+-.+++.++..+...++.+|.+|
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL 58 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFEL 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3556778888888888888888888888888777777666655444444444333
No 140
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=94.73 E-value=2 Score=39.26 Aligned_cols=20 Identities=15% Similarity=0.255 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010679 142 LVVAREELIAKVHQLTQDLQ 161 (504)
Q Consensus 142 L~aerqeL~aqvq~L~~ELq 161 (504)
+...+.++..+++.+..+|.
T Consensus 92 ~~e~l~~a~~~l~d~~~~L~ 111 (175)
T 4abx_A 92 LQNELRAALESVQAIAGELR 111 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444443
No 141
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=94.71 E-value=2.6 Score=38.81 Aligned_cols=34 Identities=12% Similarity=0.169 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 010679 174 LSELESLRQEYHHCRGTYEYEKKFYNDHLESLQV 207 (504)
Q Consensus 174 ~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqe 207 (504)
...+..+..+.+.++.+|......+..+.+..+.
T Consensus 141 l~~v~~ll~kh~~~~~el~~~~~~i~~l~~~g~~ 174 (216)
T 1u5p_A 141 LTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKK 174 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3344455555555555555444444444443333
No 142
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=94.69 E-value=3.5 Score=40.31 Aligned_cols=8 Identities=0% Similarity=0.028 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 010679 54 KIASQHVE 61 (504)
Q Consensus 54 eLe~~~eE 61 (504)
+.+....+
T Consensus 47 ~~~~f~~e 54 (323)
T 3edv_A 47 RFREFARD 54 (323)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 143
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=94.67 E-value=3.4 Score=39.94 Aligned_cols=28 Identities=4% Similarity=-0.013 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 51 MEQKIASQHVEMQKLATENQRLAATHGT 78 (504)
Q Consensus 51 LEqeLe~~~eEIq~Le~e~qrLe~qi~~ 78 (504)
....|....+++..++..+.+|......
T Consensus 19 FR~~l~~~E~~~~~l~~~l~kl~k~~~~ 46 (265)
T 2q12_A 19 TRSLLGVFEEDATAISNYMNQLYQAMHR 46 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443333
No 144
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=94.65 E-value=1.6 Score=38.87 Aligned_cols=16 Identities=6% Similarity=0.378 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 010679 108 MRNLTEKIAKMEAELK 123 (504)
Q Consensus 108 L~eL~eki~kLEaEL~ 123 (504)
+..+...|..+..+|.
T Consensus 56 l~~v~kdi~~a~~eL~ 71 (141)
T 3okq_A 56 LETVSKDLENAQADVL 71 (141)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444333
No 145
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=94.63 E-value=0.25 Score=52.40 Aligned_cols=13 Identities=8% Similarity=0.235 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 010679 207 VMEKNYITMATEV 219 (504)
Q Consensus 207 emek~L~sme~Ei 219 (504)
++++++..++.++
T Consensus 87 ~~~~~~~~~~~~~ 99 (455)
T 2dq0_A 87 ELENEVEELKKKI 99 (455)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 146
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=94.63 E-value=0.31 Score=40.63 Aligned_cols=32 Identities=13% Similarity=0.270 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 130 LEFQKSKTEAQNLVVAREELIAKVHQLTQDLQ 161 (504)
Q Consensus 130 aELeqLr~ELqeL~aerqeL~aqvq~L~~ELq 161 (504)
.+|..++.+|..+..+...|..+++.|..++.
T Consensus 56 ~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~ 87 (93)
T 3s4r_A 56 EEMRELRRQVDQLTNDKARVEVERDNLAEDIM 87 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433333
No 147
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=94.60 E-value=0.47 Score=38.62 Aligned_cols=8 Identities=13% Similarity=0.534 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 010679 111 LTEKIAKM 118 (504)
Q Consensus 111 L~eki~kL 118 (504)
++..|..+
T Consensus 31 ~q~~i~~l 38 (84)
T 1gk4_A 31 YQDTIGRL 38 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 148
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=94.60 E-value=1.7 Score=41.38 Aligned_cols=16 Identities=13% Similarity=0.158 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 010679 51 MEQKIASQHVEMQKLA 66 (504)
Q Consensus 51 LEqeLe~~~eEIq~Le 66 (504)
+-++++.+...|..+.
T Consensus 45 f~~~ve~i~~~i~~i~ 60 (279)
T 3c98_B 45 FFEQVEEIRGFIDKIA 60 (279)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334443333333333
No 149
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=94.57 E-value=0.73 Score=39.99 Aligned_cols=15 Identities=13% Similarity=0.100 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 010679 195 KKFYNDHLESLQVME 209 (504)
Q Consensus 195 kk~~~el~eqlqeme 209 (504)
+..+..|.++.+++.
T Consensus 70 K~eY~~L~KkYk~~~ 84 (119)
T 2avr_X 70 KSQYQELASKYEDAL 84 (119)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444433333
No 150
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=94.50 E-value=2.1 Score=38.55 Aligned_cols=20 Identities=35% Similarity=0.416 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010679 144 VAREELIAKVHQLTQDLQRA 163 (504)
Q Consensus 144 aerqeL~aqvq~L~~ELq~l 163 (504)
....+...++..++.+|.+.
T Consensus 73 rKyeE~~RKl~~~E~dLera 92 (147)
T 2b9c_A 73 RKYEEVARKLVIIESDLERA 92 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433
No 151
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=94.46 E-value=0.4 Score=46.50 Aligned_cols=10 Identities=0% Similarity=-0.203 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 010679 51 MEQKIASQHV 60 (504)
Q Consensus 51 LEqeLe~~~e 60 (504)
+...+...-.
T Consensus 11 v~~~~~~Y~~ 20 (243)
T 2a01_A 11 VKDLATVYVD 20 (243)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 152
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Probab=94.45 E-value=4.6 Score=41.77 Aligned_cols=14 Identities=29% Similarity=0.439 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 010679 77 GTLRQELAAAQHEL 90 (504)
Q Consensus 77 ~~LkqELa~lqqEL 90 (504)
..++.+|......+
T Consensus 175 ~~~~~~l~~~~~~v 188 (476)
T 1hci_A 175 EAFESDLAAHQDRV 188 (476)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHH
Confidence 33333333333333
No 153
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=94.45 E-value=1.5 Score=40.78 Aligned_cols=16 Identities=6% Similarity=0.046 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 010679 209 EKNYITMATEVEKLRA 224 (504)
Q Consensus 209 ek~L~sme~EiekLra 224 (504)
...++.+....+.|..
T Consensus 186 ~~~~~~l~~~W~~L~~ 201 (218)
T 3edu_A 186 QNKEQEVSAAWQALLD 201 (218)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444433
No 154
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=94.44 E-value=0.69 Score=38.09 Aligned_cols=31 Identities=16% Similarity=0.136 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 130 LEFQKSKTEAQNLVVAREELIAKVHQLTQDL 160 (504)
Q Consensus 130 aELeqLr~ELqeL~aerqeL~aqvq~L~~EL 160 (504)
.++..++..+.+....+.+|..+...|..+.
T Consensus 21 eel~~lke~l~k~e~~rkele~~~~~l~~ek 51 (89)
T 3bas_A 21 KQMDKMKEDLAKTERIKKELEEQNVTLLEQK 51 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444333
No 155
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=94.43 E-value=3.4 Score=38.99 Aligned_cols=31 Identities=6% Similarity=0.118 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 52 EQKIASQHVEMQKLATENQRLAATHGTLRQE 82 (504)
Q Consensus 52 EqeLe~~~eEIq~Le~e~qrLe~qi~~LkqE 82 (504)
+.+++.+..++..++....+|..++......
T Consensus 36 D~~fe~~~~~f~~~e~~~~~l~k~~~~y~~~ 66 (244)
T 1uru_A 36 DEIFDDHLNNFNRQQASANRLQKEFNNYIRC 66 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666655555555555544433
No 156
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=94.39 E-value=0.77 Score=47.46 Aligned_cols=22 Identities=14% Similarity=0.317 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010679 203 ESLQVMEKNYITMATEVEKLRA 224 (504)
Q Consensus 203 eqlqemek~L~sme~EiekLra 224 (504)
+...++++++.++.-++.+|+.
T Consensus 233 ~~~~~~~~~~~~lkp~l~ql~k 254 (373)
T 3hhm_B 233 AEYREIDKRMNSIKPDLIQLRK 254 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccChHHHHHHH
Confidence 3334444444444444444444
No 157
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=94.30 E-value=3.9 Score=39.19 Aligned_cols=6 Identities=0% Similarity=0.213 Sum_probs=2.3
Q ss_pred HHHHHH
Q 010679 215 MATEVE 220 (504)
Q Consensus 215 me~Eie 220 (504)
+...++
T Consensus 240 ~~~~~~ 245 (276)
T 2v0o_A 240 FINNMA 245 (276)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 158
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=94.24 E-value=0.98 Score=39.40 Aligned_cols=35 Identities=23% Similarity=0.172 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 194 EKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 194 ~kk~~~el~eqlqemek~L~sme~EiekLraELek 228 (504)
++++++.+.+.+..+++.+..+...+..+..+|.+
T Consensus 93 l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~ 127 (133)
T 1fxk_C 93 IKSQKNELESTLQKMGENLRAITDIMMKLSPQAEE 127 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444433
No 159
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=94.22 E-value=0.76 Score=43.23 Aligned_cols=6 Identities=0% Similarity=-0.052 Sum_probs=2.8
Q ss_pred cccccc
Q 010679 232 VDRRAA 237 (504)
Q Consensus 232 ~~~~~~ 237 (504)
.++|.-
T Consensus 181 ~~rw~e 186 (192)
T 2p22_C 181 LATWDK 186 (192)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 355543
No 160
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=94.21 E-value=0.46 Score=50.99 Aligned_cols=14 Identities=14% Similarity=0.219 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 010679 147 EELIAKVHQLTQDL 160 (504)
Q Consensus 147 qeL~aqvq~L~~EL 160 (504)
++|+++++.+.++|
T Consensus 87 ~~l~~~rn~~sk~i 100 (501)
T 1wle_A 87 RSLEEEKEAVTEAV 100 (501)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 161
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=94.16 E-value=3.4 Score=38.00 Aligned_cols=51 Identities=10% Similarity=0.075 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 227 (504)
Q Consensus 177 IeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELe 227 (504)
.+.|+..|..+....+.+...+........++++++.++.-+|..|+..-+
T Consensus 98 ~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD 148 (170)
T 3l4q_C 98 SERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRD 148 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 334444444444433333333444444444555555555555555544433
No 162
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1
Probab=94.16 E-value=1.7 Score=47.25 Aligned_cols=26 Identities=12% Similarity=0.164 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 50 VMEQKIASQHVEMQKLATENQRLAAT 75 (504)
Q Consensus 50 ~LEqeLe~~~eEIq~Le~e~qrLe~q 75 (504)
.|+++++.++..++.++.+++.|++.
T Consensus 6 ~i~~~~~~l~~~~q~~e~~~k~Le~~ 31 (575)
T 1bf5_A 6 ELDSKVRNVKDKVMCIEHEIKSLEDL 31 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666555555555544443
No 163
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=94.15 E-value=2.7 Score=44.52 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHhhHHHH
Q 010679 177 LESLRQEYHHCRGTYEYE 194 (504)
Q Consensus 177 IeaLrqELq~LR~eLe~~ 194 (504)
|+..+..++.|+..++-+
T Consensus 191 i~~yr~k~~aL~~aIe~E 208 (526)
T 3iyk_A 191 VKEYRDKIDALKNAIEVE 208 (526)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 164
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=94.15 E-value=2.5 Score=37.07 Aligned_cols=39 Identities=15% Similarity=0.214 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 010679 172 ALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEK 210 (504)
Q Consensus 172 ~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek 210 (504)
.|...|...+.++..++.+++..+..+.+...+.+.+++
T Consensus 78 ~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e~ 116 (150)
T 3ajw_A 78 TLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQT 116 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555555444443
No 165
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=94.13 E-value=0.61 Score=48.70 Aligned_cols=25 Identities=8% Similarity=-0.073 Sum_probs=9.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Q 010679 180 LRQEYHHCRGTYEYEKKFYNDHLES 204 (504)
Q Consensus 180 LrqELq~LR~eLe~~kk~~~el~eq 204 (504)
+..|+.+++..|......+.+|+..
T Consensus 89 ml~~~~~~~~~~~~~~~~i~~l~~~ 113 (411)
T 3ghg_C 89 MLEEIMKYEASILTHDSSIRYLQEI 113 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4444444444333333333333333
No 166
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=94.06 E-value=0.86 Score=48.37 Aligned_cols=48 Identities=15% Similarity=0.119 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQ 96 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~ 96 (504)
+..+.+|...+.|+.++...++.+.+..+....++.+.+.+|..-.+.
T Consensus 5 a~yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~aeNea 52 (497)
T 3iox_A 5 ADYQAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAENTA 52 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 455677888888888888888877777766655555544444443333
No 167
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=94.06 E-value=6.3 Score=40.62 Aligned_cols=32 Identities=9% Similarity=0.127 Sum_probs=20.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 47 PPEVMEQKIASQHVEMQKLATENQRLAATHGT 78 (504)
Q Consensus 47 ~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~ 78 (504)
.+..++++++..+.-|..+...+..|....+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 213 (386)
T 4akv_A 182 DLQDVEDRVDTFKAFSKKMDDSVLQLSTVASE 213 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777877777776666666555544333
No 168
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=94.05 E-value=0.77 Score=41.08 Aligned_cols=11 Identities=36% Similarity=0.298 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 010679 78 TLRQELAAAQH 88 (504)
Q Consensus 78 ~LkqELa~lqq 88 (504)
.|+.+|+..+.
T Consensus 24 qL~nrla~~~a 34 (158)
T 3tul_A 24 QLESRLAVWQA 34 (158)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444443333
No 169
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1
Probab=94.04 E-value=3.5 Score=44.78 Aligned_cols=24 Identities=4% Similarity=0.062 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 59 HVEMQKLATENQRLAATHGTLRQE 82 (504)
Q Consensus 59 ~eEIq~Le~e~qrLe~qi~~LkqE 82 (504)
..+++.|....+.++.++..|++.
T Consensus 8 ~~~~~~l~~~~q~~e~~~k~Le~~ 31 (575)
T 1bf5_A 8 DSKVRNVKDKVMCIEHEIKSLEDL 31 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555556655555443
No 170
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=94.00 E-value=0.24 Score=52.98 Aligned_cols=16 Identities=0% Similarity=-0.041 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 010679 205 LQVMEKNYITMATEVE 220 (504)
Q Consensus 205 lqemek~L~sme~Eie 220 (504)
++++++++..++.++.
T Consensus 87 i~~le~~~~~~~~~~~ 102 (485)
T 3qne_A 87 KKEIIEKEAEADKNLR 102 (485)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333344333
No 171
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=93.93 E-value=0.94 Score=47.32 Aligned_cols=20 Identities=10% Similarity=0.159 Sum_probs=10.6
Q ss_pred CChHHHHHHHHHHHHHHHHH
Q 010679 46 PPPEVMEQKIASQHVEMQKL 65 (504)
Q Consensus 46 p~~~~LEqeLe~~~eEIq~L 65 (504)
|.-=.|..-|...+..|..-
T Consensus 20 PTtCgl~d~L~kye~~V~~~ 39 (411)
T 3ghg_C 20 PTTCGIADFLSTYQTKVDKD 39 (411)
T ss_dssp ECSHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHhccchhhH
Confidence 55545555555555554443
No 172
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=93.92 E-value=0.23 Score=39.46 Aligned_cols=35 Identities=14% Similarity=0.093 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010679 198 YNDHLESLQVMEKNYITMATEVEKLRAELMNAPNV 232 (504)
Q Consensus 198 ~~el~eqlqemek~L~sme~EiekLraELekle~~ 232 (504)
+....+.++++++.|...+.+|..|+.+|++++.+
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSV 69 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNELDKYRSV 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33444556677777788888888888888887653
No 173
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=93.89 E-value=2.1 Score=37.14 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010679 50 VMEQKIASQHVEMQKLA 66 (504)
Q Consensus 50 ~LEqeLe~~~eEIq~Le 66 (504)
.++.++..+..+++.|.
T Consensus 6 ~V~s~l~~LEaeyq~L~ 22 (119)
T 2avr_X 6 SLVGELQALDAEYQNLA 22 (119)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 174
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=93.89 E-value=5.7 Score=39.52 Aligned_cols=11 Identities=18% Similarity=0.262 Sum_probs=4.8
Q ss_pred HHHHHHHHHhc
Q 010679 219 VEKLRAELMNA 229 (504)
Q Consensus 219 iekLraELekl 229 (504)
++.|+..|+.+
T Consensus 265 ~~~l~~~i~~i 275 (337)
T 2x3v_A 265 YRELEQAIRGA 275 (337)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHc
Confidence 34444444443
No 175
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=93.87 E-value=0.68 Score=37.36 Aligned_cols=12 Identities=25% Similarity=0.282 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 010679 109 RNLTEKIAKMEA 120 (504)
Q Consensus 109 ~eL~eki~kLEa 120 (504)
..|+.+|..++.
T Consensus 44 ~~L~kKiq~lE~ 55 (81)
T 1ic2_A 44 VALQKKLKGTED 55 (81)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 176
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=93.86 E-value=0.45 Score=44.65 Aligned_cols=25 Identities=8% Similarity=0.023 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 52 EQKIASQHVEMQKLATENQRLAATH 76 (504)
Q Consensus 52 EqeLe~~~eEIq~Le~e~qrLe~qi 76 (504)
+.-......-+..+.....++..++
T Consensus 27 e~v~~~~~~y~~~l~~~a~~~~eqL 51 (191)
T 1nfn_A 27 ELALGRFWDYLRWVQTLSEQVQEEL 51 (191)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333444433
No 177
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=93.81 E-value=0.51 Score=38.15 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 172 ALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 226 (504)
Q Consensus 172 ~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraEL 226 (504)
.+.+||..|+-.+.+++++--...+++..-++.+..+.++|..-..||+.|+.+|
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3444455555555555444444444444445555666666666666666666665
No 178
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=93.81 E-value=0.43 Score=40.28 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 129 KLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR 162 (504)
Q Consensus 129 kaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~ 162 (504)
..++..++.+|.+|..++..|..+++.|+.+|.+
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777777777777777777777777654
No 179
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=93.76 E-value=0.82 Score=37.63 Aligned_cols=44 Identities=11% Similarity=0.130 Sum_probs=20.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 47 PPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHEL 90 (504)
Q Consensus 47 ~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL 90 (504)
.....+.++.....++..+.....+....+..|......+.++.
T Consensus 8 ~~~~~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek 51 (89)
T 3bas_A 8 SIARQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQK 51 (89)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555444444444444433333333
No 180
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=93.75 E-value=6.3 Score=39.57 Aligned_cols=14 Identities=0% Similarity=-0.038 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 010679 69 NQRLAATHGTLRQE 82 (504)
Q Consensus 69 ~qrLe~qi~~LkqE 82 (504)
+..+..++..++++
T Consensus 48 l~~f~keRa~IE~e 61 (350)
T 3aco_A 48 LMNCLHERARIEKA 61 (350)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 181
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=93.73 E-value=2.2 Score=37.02 Aligned_cols=11 Identities=18% Similarity=0.271 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 010679 53 QKIASQHVEMQ 63 (504)
Q Consensus 53 qeLe~~~eEIq 63 (504)
.++..+..+++
T Consensus 9 ~~l~~Leae~q 19 (119)
T 3etw_A 9 GELQALDAEYQ 19 (119)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 182
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=93.63 E-value=6.6 Score=43.61 Aligned_cols=28 Identities=11% Similarity=0.153 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 201 HLESLQVMEKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 201 l~eqlqemek~L~sme~EiekLraELek 228 (504)
+...+++-.+=...|..-+.+++.+++.
T Consensus 672 l~~~l~eG~~FY~~L~~~~~~~~~~~~d 699 (704)
T 2xs1_A 672 LVANLKEGTKFYNELTEILVRFQNKCSD 699 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334455555555555543
No 183
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=93.61 E-value=0.64 Score=49.07 Aligned_cols=6 Identities=50% Similarity=1.564 Sum_probs=2.4
Q ss_pred CCCCCC
Q 010679 262 YEDGYG 267 (504)
Q Consensus 262 y~~~y~ 267 (504)
|-.|||
T Consensus 269 Yk~GFG 274 (461)
T 3ghg_B 269 YKQGFG 274 (461)
T ss_dssp HHHEEE
T ss_pred HhhccC
Confidence 334444
No 184
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=93.51 E-value=5.1 Score=37.75 Aligned_cols=32 Identities=9% Similarity=0.065 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLR 80 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~Lk 80 (504)
+.+++++..+...+..|..+...+...+..+.
T Consensus 40 e~~~~~f~~~e~~~~~l~k~~~~y~~~~~~~~ 71 (244)
T 1uru_A 40 DDHLNNFNRQQASANRLQKEFNNYIRCVRAAQ 71 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777877778888777777666555543
No 185
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=93.48 E-value=0.56 Score=37.94 Aligned_cols=35 Identities=11% Similarity=0.096 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679 197 FYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 231 (504)
Q Consensus 197 ~~~el~eqlqemek~L~sme~EiekLraELekle~ 231 (504)
.+.....++++.+++...+..|+++|+.+++.|+.
T Consensus 39 ~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~ 73 (81)
T 1wt6_A 39 DNQNFASQLREAEARNRDLEAHVRQLQERMELLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444455666666666666777777777776543
No 186
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=93.47 E-value=0.54 Score=47.32 Aligned_cols=12 Identities=8% Similarity=0.254 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHh
Q 010679 217 TEVEKLRAELMN 228 (504)
Q Consensus 217 ~EiekLraELek 228 (504)
..++.|+..|+-
T Consensus 264 ~~~eeLr~~l~P 275 (307)
T 2l7b_A 264 AAQARLKSRFEP 275 (307)
T ss_dssp HHHHHHHHHHTT
T ss_pred hHHHHHHHHhhh
Confidence 334444444443
No 187
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=93.44 E-value=6.4 Score=38.72 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 010679 72 LAATHGTLRQELAAAQHELQILHGQ 96 (504)
Q Consensus 72 Le~qi~~LkqELa~lqqEL~~L~~~ 96 (504)
+...++.++.||...+..+..+...
T Consensus 46 ~~~kh~~le~El~a~e~~v~~v~~~ 70 (283)
T 3pe0_A 46 KKESYSALMRELELKEKKIKELQNA 70 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3344555555555555555544443
No 188
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=93.36 E-value=0.25 Score=36.77 Aligned_cols=42 Identities=29% Similarity=0.372 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQIL 93 (504)
Q Consensus 52 EqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L 93 (504)
++++..+..++..|..+|.+|.+.+.+.+++|..++.+|++|
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 778888888889999999999999999998888888888776
No 189
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=93.36 E-value=5.7 Score=37.87 Aligned_cols=9 Identities=11% Similarity=0.294 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 010679 219 VEKLRAELM 227 (504)
Q Consensus 219 iekLraELe 227 (504)
.++|+..+.
T Consensus 212 a~~L~~~v~ 220 (227)
T 1qu7_A 212 ASRLTEAVA 220 (227)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 190
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=93.34 E-value=1.1 Score=39.23 Aligned_cols=22 Identities=9% Similarity=0.244 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc
Q 010679 78 TLRQELAAAQHELQILHGQIGG 99 (504)
Q Consensus 78 ~LkqELa~lqqEL~~L~~~L~~ 99 (504)
.|..+++.++.++..+...+..
T Consensus 10 ~l~~KvAElekkv~~lek~lk~ 31 (125)
T 2pms_C 10 APQAKIAELENQVHRLEQELKE 31 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555444
No 191
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=93.30 E-value=2.9 Score=40.98 Aligned_cols=29 Identities=10% Similarity=0.189 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATHG 77 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~ 77 (504)
..+=.+++.+...|..+...+.+|...+.
T Consensus 31 ~~F~~~v~~I~~~I~~I~~~v~~l~~l~~ 59 (267)
T 1dn1_B 31 DEFFEQVEEIRGFIDKIAENVEEVKRKHS 59 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555554444443
No 192
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=93.30 E-value=1.7 Score=42.38 Aligned_cols=17 Identities=18% Similarity=0.262 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010679 62 MQKLATENQRLAATHGT 78 (504)
Q Consensus 62 Iq~Le~e~qrLe~qi~~ 78 (504)
|..+..++..++.+...
T Consensus 27 l~~f~keRa~iE~~Yak 43 (290)
T 3i2w_A 27 LQQLIQERADIEKGYAK 43 (290)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 193
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=93.29 E-value=0.7 Score=43.97 Aligned_cols=12 Identities=8% Similarity=0.318 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q 010679 128 VKLEFQKSKTEA 139 (504)
Q Consensus 128 LkaELeqLr~EL 139 (504)
+..+++.++..+
T Consensus 85 l~kd~ee~r~~l 96 (216)
T 2lem_A 85 MNKDLEEVKQKV 96 (216)
T ss_dssp HHHHHHHHHHHT
T ss_pred HhccHHHHHHhh
Confidence 444455555443
No 194
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=93.29 E-value=0.29 Score=42.89 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010679 104 RELQMRNLTEKIAKMEAELKTA 125 (504)
Q Consensus 104 ~E~eL~eL~eki~kLEaEL~el 125 (504)
++..+.+|..++..++.++..+
T Consensus 11 l~~KvAElekkv~~lek~lk~~ 32 (125)
T 2pms_C 11 PQAKIAELENQVHRLEQELKEI 32 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666777777776666544
No 195
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=93.23 E-value=0.4 Score=40.52 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 010679 211 NYITMATEVEKLRAELMNA 229 (504)
Q Consensus 211 ~L~sme~EiekLraELekl 229 (504)
.++.+..|+++|+..|.++
T Consensus 76 ~~e~Lq~E~erLr~~v~~l 94 (100)
T 1go4_E 76 DHSQLQAECERLRGLLRAM 94 (100)
T ss_dssp HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444
No 196
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=93.19 E-value=5.9 Score=37.57 Aligned_cols=17 Identities=12% Similarity=0.302 Sum_probs=7.1
Q ss_pred hHHHHHHHHHHHHHHHH
Q 010679 171 PALLSELESLRQEYHHC 187 (504)
Q Consensus 171 ~~L~~EIeaLrqELq~L 187 (504)
..+..+.+.++.++..+
T Consensus 165 ~~ll~~h~~~~~~l~~~ 181 (250)
T 1quu_A 165 QSLITAHEQFKATLPEA 181 (250)
T ss_dssp HHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444333333
No 197
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=93.15 E-value=1.1 Score=47.35 Aligned_cols=25 Identities=16% Similarity=0.392 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 204 SLQVMEKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 204 qlqemek~L~sme~EiekLraELek 228 (504)
.|+.|...++.+.+.|++|+..|..
T Consensus 164 ~i~~l~~~~~~~~~~i~~l~~~~~~ 188 (461)
T 3ghg_B 164 NLRVLRSILENLRSKIQKLESDVSA 188 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444444444443
No 198
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=93.05 E-value=5.1 Score=44.45 Aligned_cols=14 Identities=21% Similarity=0.359 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHhc
Q 010679 216 ATEVEKLRAELMNA 229 (504)
Q Consensus 216 e~EiekLraELekl 229 (504)
..++++++++|..+
T Consensus 675 ~~~~~~~~~~~~~~ 688 (695)
T 2j69_A 675 IAQLQKIEAAYSNL 688 (695)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 199
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Probab=93.04 E-value=1.5 Score=47.80 Aligned_cols=27 Identities=15% Similarity=0.266 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAAT 75 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~q 75 (504)
..|+++++.++.+++.++.+++.|++.
T Consensus 16 ~ei~~~v~~lr~~~q~~e~~ik~Le~~ 42 (596)
T 1bg1_A 16 QMLEQHLQDVRKRVQDLEQKMKVVENL 42 (596)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555554444443
No 200
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=92.95 E-value=6.4 Score=37.32 Aligned_cols=15 Identities=33% Similarity=0.505 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 010679 75 THGTLRQELAAAQHE 89 (504)
Q Consensus 75 qi~~LkqELa~lqqE 89 (504)
.|..++.+|...+.+
T Consensus 56 kh~~~~~el~~~~~~ 70 (250)
T 1quu_A 56 KHEAFESDLAAHQDR 70 (250)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 201
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=92.93 E-value=2.3 Score=34.48 Aligned_cols=48 Identities=15% Similarity=0.233 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 173 LLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 227 (504)
Q Consensus 173 L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELe 227 (504)
.+..|..+..++.+++.+++.....+.+ +-+-...++.||..-++-|+
T Consensus 31 ~q~~i~~lE~eL~~~r~e~~~q~~EYq~-------LlnvK~~Ld~EIatYRkLLE 78 (84)
T 1gk4_A 31 YQDTIGRLQDEIQNMKEEMARHLREYQD-------LLNVKMALDIEIATYRKLLE 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhHHHHHHHHHHHc
Confidence 3444555555555555554433333333 23333334455555554443
No 202
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=92.93 E-value=0.22 Score=50.19 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 010679 207 VMEKNYITMATEVEKLRAELMNA 229 (504)
Q Consensus 207 emek~L~sme~EiekLraELekl 229 (504)
.++.++..++.+++.++.+++.+
T Consensus 133 ~~~~~l~~~~~~l~~a~~~l~~~ 155 (369)
T 4dk0_A 133 VVQENIKQAEIEVNTAETNLGYT 155 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHhhcC
Confidence 33444445555555555555543
No 203
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=92.88 E-value=9.2 Score=38.94 Aligned_cols=31 Identities=13% Similarity=0.005 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 48 PEVMEQKIASQHVEMQKLATENQRLAATHGT 78 (504)
Q Consensus 48 ~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~ 78 (504)
+..++++++..+.-|..|+..+..|......
T Consensus 163 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 193 (366)
T 3dyt_A 163 LVEIEQKCEAVGKFTKAMDDGVKELLTVGQE 193 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777776666666666655555444433
No 204
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens}
Probab=92.84 E-value=2.5 Score=46.84 Aligned_cols=22 Identities=5% Similarity=0.066 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010679 58 QHVEMQKLATENQRLAATHGTL 79 (504)
Q Consensus 58 ~~eEIq~Le~e~qrLe~qi~~L 79 (504)
+...++.|....+.++.++..|
T Consensus 142 i~~~v~~lr~~~q~~e~~ik~L 163 (683)
T 1yvl_A 142 LDSKVRNVKDKVMCIEHEIKSL 163 (683)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 205
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=92.80 E-value=11 Score=39.47 Aligned_cols=9 Identities=33% Similarity=0.427 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 010679 75 THGTLRQEL 83 (504)
Q Consensus 75 qi~~LkqEL 83 (504)
.+..|+.++
T Consensus 169 ~L~~L~~~~ 177 (413)
T 4hpq_C 169 RMKGLRDEF 177 (413)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 334444333
No 206
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}
Probab=92.76 E-value=6.2 Score=36.67 Aligned_cols=33 Identities=9% Similarity=0.146 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 010679 176 ELESLRQEYHHCRGTYEYEKKFYNDHLESLQVM 208 (504)
Q Consensus 176 EIeaLrqELq~LR~eLe~~kk~~~el~eqlqem 208 (504)
++..++...+.+..+|+.....+..+....+.|
T Consensus 139 ~v~~l~~k~~~f~~el~~~~~~v~~l~~~~~~L 171 (210)
T 3pdy_A 139 NMTAKKESYSALMRELELKEKKIKELQNAGDRL 171 (210)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 456666666666666665555555555544443
No 207
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=92.59 E-value=0.17 Score=53.20 Aligned_cols=13 Identities=15% Similarity=0.368 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 010679 208 MEKNYITMATEVE 220 (504)
Q Consensus 208 mek~L~sme~Eie 220 (504)
+++++..++.++.
T Consensus 87 ~~~~~~~~~~~~~ 99 (425)
T 2dq3_A 87 LEEELRKVEEELK 99 (425)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 208
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=92.58 E-value=7.4 Score=37.09 Aligned_cols=12 Identities=17% Similarity=0.302 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHh
Q 010679 217 TEVEKLRAELMN 228 (504)
Q Consensus 217 ~EiekLraELek 228 (504)
.+|..+-.+|..
T Consensus 206 ~~L~~~a~~L~~ 217 (227)
T 1qu7_A 206 AALEEQASRLTE 217 (227)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 209
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=92.47 E-value=3.4 Score=34.05 Aligned_cols=16 Identities=13% Similarity=0.196 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 010679 107 QMRNLTEKIAKMEAEL 122 (504)
Q Consensus 107 eL~eL~eki~kLEaEL 122 (504)
.+.+|..=|...+..+
T Consensus 10 ~l~el~~WL~~~e~~l 25 (119)
T 3uun_A 10 ALEEVLSWLLSAEDTL 25 (119)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444344444333
No 210
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=92.41 E-value=2.3 Score=38.00 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 129 KLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR 162 (504)
Q Consensus 129 kaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~ 162 (504)
+++...--.|...|.+++..+..++.+|..+|..
T Consensus 51 K~~F~~dy~EYk~Lhaev~~v~~~F~~Ld~~L~~ 84 (140)
T 1xaw_A 51 KRNFDTGLQEYKSLQSVLDEINKELSRLDKELDD 84 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333334444444444444444444444444
No 211
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=92.36 E-value=0.39 Score=44.85 Aligned_cols=50 Identities=24% Similarity=0.313 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG 98 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~ 98 (504)
..++++|+..+..|+.|..++..|..+++...++++.++++|+.++.++.
T Consensus 9 ~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 9 NSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 46788888888888888888888888888777777777777777766653
No 212
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=92.28 E-value=0.87 Score=37.24 Aligned_cols=15 Identities=20% Similarity=0.244 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHhhH
Q 010679 177 LESLRQEYHHCRGTY 191 (504)
Q Consensus 177 IeaLrqELq~LR~eL 191 (504)
|..+..++.+++.++
T Consensus 37 i~~lE~el~~~r~e~ 51 (86)
T 1x8y_A 37 LAEKEREMAEMRARM 51 (86)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 213
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=92.17 E-value=0.99 Score=36.37 Aligned_cols=54 Identities=15% Similarity=0.121 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010679 177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP 230 (504)
Q Consensus 177 IeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle 230 (504)
+...+.||+.|+..-+.+++-...+.+-+..++.+...+.++|+.|+...+.|+
T Consensus 20 ~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 20 MDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444455555555555555555555555443
No 214
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Probab=92.16 E-value=2.7 Score=45.89 Aligned_cols=31 Identities=13% Similarity=0.094 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 52 EQKIASQHVEMQKLATENQRLAATHGTLRQE 82 (504)
Q Consensus 52 EqeLe~~~eEIq~Le~e~qrLe~qi~~LkqE 82 (504)
+++...+..+++.|....+.++.++..|++.
T Consensus 12 ~~k~~ei~~~v~~lr~~~q~~e~~ik~Le~~ 42 (596)
T 1bg1_A 12 TEKQQMLEQHLQDVRKRVQDLEQKMKVVENL 42 (596)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666777777777777766666443
No 215
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=92.10 E-value=1.7 Score=46.69 Aligned_cols=20 Identities=5% Similarity=-0.102 Sum_probs=12.8
Q ss_pred CCCChHHHHHHHHHHHHHHH
Q 010679 44 MMPPPEVMEQKIASQHVEMQ 63 (504)
Q Consensus 44 ~~p~~~~LEqeLe~~~eEIq 63 (504)
+|..+..+.+..+...+.++
T Consensus 39 pmlD~~~ir~n~~~v~~~l~ 58 (501)
T 1wle_A 39 PLLDMESLCAYPEDAARALD 58 (501)
T ss_dssp CCCCHHHHHHSHHHHHHHHH
T ss_pred CccCHHHHHhCHHHHHHHHH
Confidence 56677777776666555443
No 216
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=92.07 E-value=3.9 Score=39.85 Aligned_cols=7 Identities=14% Similarity=0.254 Sum_probs=2.8
Q ss_pred HHHHHHh
Q 010679 222 LRAELMN 228 (504)
Q Consensus 222 LraELek 228 (504)
++..|++
T Consensus 255 ~~~~i~~ 261 (290)
T 3i2w_A 255 FSHTINN 261 (290)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 3444443
No 217
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=92.06 E-value=0.7 Score=42.86 Aligned_cols=16 Identities=6% Similarity=-0.039 Sum_probs=6.8
Q ss_pred ChHHHHHHHHHHHHHH
Q 010679 47 PPEVMEQKIASQHVEM 62 (504)
Q Consensus 47 ~~~~LEqeLe~~~eEI 62 (504)
+.+.+...+-..-..+
T Consensus 8 ~~e~v~~~~w~Y~~~l 23 (185)
T 3r2p_A 8 PWDRVKDLATVYVDVL 23 (185)
T ss_dssp TTHHHHHHHHHHTHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 218
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens}
Probab=92.05 E-value=7.2 Score=43.22 Aligned_cols=15 Identities=13% Similarity=-0.044 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 010679 211 NYITMATEVEKLRAE 225 (504)
Q Consensus 211 ~L~sme~EiekLraE 225 (504)
.+..+...+..|-..
T Consensus 297 ~~~~l~~~~~~ll~~ 311 (683)
T 1yvl_A 297 NKQVLWDRTFSLFQQ 311 (683)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 344444444444443
No 219
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=92.03 E-value=9.6 Score=37.18 Aligned_cols=44 Identities=16% Similarity=0.167 Sum_probs=26.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010679 186 HCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 229 (504)
Q Consensus 186 ~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekl 229 (504)
.+|..+-.++..+--+...+...-+.--.|..|+..++..|+.+
T Consensus 190 ~~r~AL~EERrRycflv~~l~pv~~~e~~~~~e~~~l~~~l~~~ 233 (253)
T 2d1l_A 190 AVRKALIEERGRFCTFISMLRPVIEEEISMLGEITHLQTISEDL 233 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34455555666666666666655555455556777777766554
No 220
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=92.00 E-value=3.5 Score=45.91 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 57 SQHVEMQKLATENQRLAATHGTLR 80 (504)
Q Consensus 57 ~~~eEIq~Le~e~qrLe~qi~~Lk 80 (504)
.+..+|+.++.++..|+.+++..+
T Consensus 14 ~i~~~i~~~~~~r~~l~~~~~~~~ 37 (706)
T 3fhn_A 14 NINDRIKQVQNERNELASKLQNLK 37 (706)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444555555554444
No 221
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=91.97 E-value=0.16 Score=50.88 Aligned_cols=14 Identities=21% Similarity=0.328 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHhcc
Q 010679 217 TEVEKLRAELMNAP 230 (504)
Q Consensus 217 ~EiekLraELekle 230 (504)
.+++.++++|+.++
T Consensus 135 a~l~~a~a~l~~a~ 148 (341)
T 3fpp_A 135 AQIKRNQASLDTAK 148 (341)
T ss_dssp HHHHHTHHHHTTTT
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 222
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=91.95 E-value=9 Score=36.66 Aligned_cols=19 Identities=11% Similarity=0.265 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHhhHHHHH
Q 010679 177 LESLRQEYHHCRGTYEYEK 195 (504)
Q Consensus 177 IeaLrqELq~LR~eLe~~k 195 (504)
|..++.|++.++.+++.++
T Consensus 162 l~kae~el~~a~~~ye~lN 180 (237)
T 4avm_A 162 TAKAEEEFNKAQTVFEDLN 180 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 223
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=91.94 E-value=0.2 Score=50.65 Aligned_cols=28 Identities=11% Similarity=0.163 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679 204 SLQVMEKNYITMATEVEKLRAELMNAPN 231 (504)
Q Consensus 204 qlqemek~L~sme~EiekLraELekle~ 231 (504)
++...+.++..++.+++.++.+|+.++.
T Consensus 123 ~~~~a~a~~~~~~~~l~~~~~~l~~a~~ 150 (369)
T 4dk0_A 123 TLNNAKAEMDVVQENIKQAEIEVNTAET 150 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677777777777777776654
No 224
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=91.90 E-value=1.1 Score=41.50 Aligned_cols=9 Identities=11% Similarity=0.065 Sum_probs=4.3
Q ss_pred HHHHHHHHh
Q 010679 220 EKLRAELMN 228 (504)
Q Consensus 220 ekLraELek 228 (504)
.+++.++.+
T Consensus 134 ~k~~~em~K 142 (175)
T 3lay_A 134 VKRDVAMAQ 142 (175)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344445554
No 225
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=91.88 E-value=0.28 Score=49.01 Aligned_cols=26 Identities=4% Similarity=0.125 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010679 205 LQVMEKNYITMATEVEKLRAELMNAP 230 (504)
Q Consensus 205 lqemek~L~sme~EiekLraELekle 230 (504)
++.++.++..++.+++.++.+|+.+.
T Consensus 130 l~~~~a~l~~a~a~l~~a~~~l~~~~ 155 (341)
T 3fpp_A 130 IGTIDAQIKRNQASLDTAKTNLDYTR 155 (341)
T ss_dssp HHHHHHHHHHTHHHHTTTTTTTTSSE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCE
Confidence 33444455555666666666666644
No 226
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=91.72 E-value=11 Score=39.97 Aligned_cols=10 Identities=10% Similarity=0.179 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 010679 50 VMEQKIASQH 59 (504)
Q Consensus 50 ~LEqeLe~~~ 59 (504)
.+..+|..++
T Consensus 94 ~~~~Kl~eLE 103 (526)
T 3iyk_A 94 GIQAKLKELE 103 (526)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 227
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=91.72 E-value=0.38 Score=51.41 Aligned_cols=24 Identities=4% Similarity=0.029 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 204 SLQVMEKNYITMATEVEKLRAELM 227 (504)
Q Consensus 204 qlqemek~L~sme~EiekLraELe 227 (504)
+++++.+++..++.++.+++++|.
T Consensus 79 ~~~~l~~~i~~le~~~~~~~~~~~ 102 (485)
T 3qne_A 79 EKEKLSNEKKEIIEKEAEADKNLR 102 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 228
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=91.72 E-value=0.067 Score=44.57 Aligned_cols=59 Identities=22% Similarity=0.241 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 103 ERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQ 161 (504)
Q Consensus 103 e~E~eL~eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq 161 (504)
.++.+|.+|.+.+.+++.++..+.-|++.++-.+.+...-++.|..+..+++.|..+|.
T Consensus 35 ~KQ~~ideLKe~i~q~~~~~E~i~vL~aQ~~iY~~DF~aERaaREk~~~EKe~L~~ql~ 93 (96)
T 3fx0_A 35 AKQEVIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERQAREKLAEKKELLQEQLE 93 (96)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTSCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 36677888888888888887777777777777777777666666666665555555444
No 229
>2qih_A Protein USPA1; trimeric, parallel alpha-helical coiled-coil, cell adhesion; 1.90A {Moraxella catarrhalis}
Probab=91.64 E-value=6.8 Score=34.66 Aligned_cols=10 Identities=30% Similarity=0.195 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 010679 151 AKVHQLTQDL 160 (504)
Q Consensus 151 aqvq~L~~EL 160 (504)
..+-.|..++
T Consensus 75 RdIgsL~ddV 84 (157)
T 2qih_A 75 RAVGNNTQGV 84 (157)
T ss_dssp HHHHHHHHHH
T ss_pred hhhcchhhHH
Confidence 3333333333
No 230
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=91.57 E-value=0.51 Score=39.89 Aligned_cols=29 Identities=21% Similarity=0.286 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 63 QKLATENQRLAATHGTLRQELAAAQHELQ 91 (504)
Q Consensus 63 q~Le~e~qrLe~qi~~LkqELa~lqqEL~ 91 (504)
..|.++...|.-+++-|+..|+...+.+.
T Consensus 19 AQLDNEKsal~YqVdlLKD~LEe~eE~~a 47 (103)
T 4h22_A 19 AQLDNEKTNFMYQVDTLKDMLLELEEQLA 47 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444333333
No 231
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=91.52 E-value=1.1 Score=39.55 Aligned_cols=16 Identities=6% Similarity=0.048 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 010679 51 MEQKIASQHVEMQKLA 66 (504)
Q Consensus 51 LEqeLe~~~eEIq~Le 66 (504)
+.+++......++.+.
T Consensus 32 Vk~EVq~sl~~l~~l~ 47 (130)
T 4dnd_A 32 VRGEVQKAVNTARGLY 47 (130)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 232
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=91.48 E-value=1.7 Score=34.48 Aligned_cols=22 Identities=18% Similarity=0.376 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010679 139 AQNLVVAREELIAKVHQLTQDL 160 (504)
Q Consensus 139 LqeL~aerqeL~aqvq~L~~EL 160 (504)
++++..+-++|+.+|+.|+.+|
T Consensus 9 Lq~~E~~N~~Le~~v~~le~~L 30 (72)
T 3cve_A 9 LQEVEIRNKDLEGQLSEMEQRL 30 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 3333333344444444444433
No 233
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=91.44 E-value=12 Score=37.06 Aligned_cols=20 Identities=25% Similarity=0.262 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHhhhcc
Q 010679 80 RQELAAAQHELQILHGQIGG 99 (504)
Q Consensus 80 kqELa~lqqEL~~L~~~L~~ 99 (504)
.+.|..+..++++.++++++
T Consensus 100 ~~~L~~~~~e~ek~RK~~Ke 119 (279)
T 3qwe_A 100 YQPLAAKRTEIEKWRKEFKE 119 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555544
No 234
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=91.44 E-value=1.2 Score=36.40 Aligned_cols=24 Identities=4% Similarity=-0.006 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Q 010679 177 LESLRQEYHHCRGTYEYEKKFYND 200 (504)
Q Consensus 177 IeaLrqELq~LR~eLe~~kk~~~e 200 (504)
+..+..++..++.+|+.+.....+
T Consensus 58 ~~~l~~~l~~~e~eLe~~~erWee 81 (89)
T 2lw1_A 58 TQKVLADMAAAEQELEQAFERWEY 81 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444433333433
No 235
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=91.41 E-value=16 Score=38.48 Aligned_cols=37 Identities=11% Similarity=0.102 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010679 131 EFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDV 167 (504)
Q Consensus 131 ELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~el 167 (504)
|.+.+++.+.+.++++..++..++.+...+.....+.
T Consensus 350 e~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~ 386 (602)
T 1cii_A 350 EWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQ 386 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555444443
No 236
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=91.35 E-value=14 Score=37.75 Aligned_cols=37 Identities=5% Similarity=-0.015 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAA 86 (504)
Q Consensus 50 ~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~l 86 (504)
.....|...+++|..++..+.+|......+...+..+
T Consensus 41 ~FRa~l~~~E~~~~~l~~~l~kl~k~~~~~~~~~~~~ 77 (407)
T 4h8s_A 41 QTRSLLSVFEEDAGTLTDYTNQLLQAMQRVYGAQNEM 77 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555544444433333
No 237
>2bsg_A Fibritin; viral protein, attachment protein, bacteriophage assembly, chaperone, coiled coil, structural protein; 15.00A {Bacteriophage T4}
Probab=91.25 E-value=1.1 Score=47.54 Aligned_cols=7 Identities=57% Similarity=0.971 Sum_probs=4.0
Q ss_pred CCCCCCC
Q 010679 24 PDPFVSG 30 (504)
Q Consensus 24 ~~~~~~~ 30 (504)
.=||.-|
T Consensus 8 ~LPfVDG 14 (487)
T 2bsg_A 8 DLPFVDG 14 (487)
T ss_pred cCCCCCC
Confidence 3366666
No 238
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=91.21 E-value=11 Score=36.26 Aligned_cols=22 Identities=9% Similarity=0.185 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHH
Q 010679 177 LESLRQEYHHCRGTYEYEKKFY 198 (504)
Q Consensus 177 IeaLrqELq~LR~eLe~~kk~~ 198 (504)
|..++.|++.++.+++.++..+
T Consensus 167 l~kae~el~~Ak~~Ye~lN~~L 188 (243)
T 4a3a_A 167 ISKAEEEFQKAQKVFEEFNVDL 188 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555444433
No 239
>2ap3_A Conserved hypothetical protein; structural genomics, tetra helix, PSI, protein structure INI midwest center for structural genomics; 1.60A {Staphylococcus aureus subsp} SCOP: a.24.27.1
Probab=91.14 E-value=4.8 Score=37.98 Aligned_cols=31 Identities=19% Similarity=0.432 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 010679 109 RNLTEKIAKMEAELKTAEPVKLEFQKSKTEA 139 (504)
Q Consensus 109 ~eL~eki~kLEaEL~ele~LkaELeqLr~EL 139 (504)
..+.++...|+.|...++..+.++..+...+
T Consensus 73 ~nv~eRek~l~kEk~si~~s~kef~~~k~~i 103 (199)
T 2ap3_A 73 KNADDRLKEFEKEEDAIKKSEQDFKKAKSHV 103 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444443333
No 240
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=91.11 E-value=15 Score=37.76 Aligned_cols=18 Identities=17% Similarity=0.058 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHhhHH
Q 010679 175 SELESLRQEYHHCRGTYE 192 (504)
Q Consensus 175 ~EIeaLrqELq~LR~eLe 192 (504)
..|..++.+|.+++.++.
T Consensus 309 ~~L~~~~~~l~~~~~~~~ 326 (406)
T 4dyl_A 309 HTLTSVTDELAVATEMVF 326 (406)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 241
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=91.04 E-value=2.8 Score=34.62 Aligned_cols=21 Identities=5% Similarity=0.178 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010679 104 RELQMRNLTEKIAKMEAELKT 124 (504)
Q Consensus 104 ~E~eL~eL~eki~kLEaEL~e 124 (504)
.+..+.+|..=|.+.+..+..
T Consensus 7 f~~~l~el~~WL~e~e~~l~~ 27 (118)
T 3uul_A 7 YQIALEEVLTWLLSAEDTFQE 27 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 344444444444444444443
No 242
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=90.89 E-value=4.8 Score=41.38 Aligned_cols=12 Identities=25% Similarity=0.490 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 010679 176 ELESLRQEYHHC 187 (504)
Q Consensus 176 EIeaLrqELq~L 187 (504)
++..++.+++.+
T Consensus 102 e~~~l~~~l~~l 113 (365)
T 1gqe_A 102 ELDALEEKLAQL 113 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444333
No 243
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=90.89 E-value=0.81 Score=38.33 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 010679 110 NLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVV 144 (504)
Q Consensus 110 eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL~a 144 (504)
+|+++|.+|+.++..++.+..++..|+.+..-|..
T Consensus 51 eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~ 85 (96)
T 1t3j_A 51 HLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLES 85 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34444444444444444444444444444333333
No 244
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=90.81 E-value=1.3 Score=35.31 Aligned_cols=10 Identities=20% Similarity=0.086 Sum_probs=2.2
Q ss_pred HHHHHHHHHH
Q 010679 200 DHLESLQVME 209 (504)
Q Consensus 200 el~eqlqeme 209 (504)
.+..++.+++
T Consensus 62 r~~~ri~elE 71 (77)
T 2w83_C 62 KLEEKNRELE 71 (77)
T ss_dssp HHHHHC----
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 245
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=90.78 E-value=4.5 Score=38.48 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=24.0
Q ss_pred CChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 46 PPPEV-MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQI 92 (504)
Q Consensus 46 p~~~~-LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~ 92 (504)
+.+.. +.+-++-+...+..+..++.+|..+.+.|+.++..+..++++
T Consensus 117 ~d~~e~i~elfd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~ 164 (213)
T 1ik9_A 117 ENPAEVIRELIAYALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEK 164 (213)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34433 345556666655555555555555555555444444443333
No 246
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Probab=90.71 E-value=17 Score=37.48 Aligned_cols=14 Identities=7% Similarity=-0.030 Sum_probs=6.1
Q ss_pred CCChHHHHHHHHHH
Q 010679 45 MPPPEVMEQKIASQ 58 (504)
Q Consensus 45 ~p~~~~LEqeLe~~ 58 (504)
+..+...-+.|..+
T Consensus 98 ~~~i~~~w~~L~~l 111 (476)
T 1hci_A 98 VSDIAGAWQRLEQA 111 (476)
T ss_dssp SSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 247
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=90.62 E-value=1.7 Score=36.95 Aligned_cols=49 Identities=18% Similarity=0.186 Sum_probs=27.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 010679 125 AEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPAL 173 (504)
Q Consensus 125 le~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L 173 (504)
+..+.+|+.+.+.++.++..++.+|+..++.|+.+-.-.-.++..|+.+
T Consensus 6 ~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiL 54 (106)
T 4e61_A 6 LVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEIL 54 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666666666665555444444334333
No 248
>4dvz_A Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.19A {Helicobacter pylori}
Probab=90.61 E-value=14 Score=38.16 Aligned_cols=14 Identities=43% Similarity=0.582 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 010679 148 ELIAKVHQLTQDLQ 161 (504)
Q Consensus 148 eL~aqvq~L~~ELq 161 (504)
++..+|+.|.+.+.
T Consensus 479 kV~aKIDNLNQaaS 492 (569)
T 4dvz_A 479 EWISKVENLNAALN 492 (569)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHH
Confidence 34444444444443
No 249
>2bsg_A Fibritin; viral protein, attachment protein, bacteriophage assembly, chaperone, coiled coil, structural protein; 15.00A {Bacteriophage T4}
Probab=90.58 E-value=0.54 Score=49.78 Aligned_cols=35 Identities=11% Similarity=0.074 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELA 84 (504)
Q Consensus 50 ~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa 84 (504)
.+++.++.+++.+..+...+..+...+..+++-|.
T Consensus 51 ~VQ~NV~~Ld~N~~~~~~~~ne~~~~Vn~I~~~L~ 85 (487)
T 2bsg_A 51 SVLRNVEVLDKNIGILKTSLETANSDIKTIQGILD 85 (487)
T ss_pred hhhhhHHHHhhhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 34555555555555555555454445544444443
No 250
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=90.54 E-value=1.2 Score=47.50 Aligned_cols=12 Identities=8% Similarity=0.138 Sum_probs=6.1
Q ss_pred CCCCChHHHHHH
Q 010679 43 DMMPPPEVMEQK 54 (504)
Q Consensus 43 ~~~p~~~~LEqe 54 (504)
-||..+..+.+.
T Consensus 5 ~mmldi~~~r~~ 16 (484)
T 3lss_A 5 MMVLDIQLFRDE 16 (484)
T ss_dssp CCCCCGGGGGSH
T ss_pred cccccHHHHHcC
Confidence 345566555444
No 251
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=90.49 E-value=2.5 Score=35.45 Aligned_cols=52 Identities=12% Similarity=0.158 Sum_probs=24.3
Q ss_pred HHHHHH-HHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 173 LLSELE-SLRQEYHHCRGTYEYEKK--FYNDHLESLQVMEKNYITMATEVEKLRA 224 (504)
Q Consensus 173 L~~EIe-aLrqELq~LR~eLe~~kk--~~~el~eqlqemek~L~sme~EiekLra 224 (504)
|+..|+ .|...+..+..+++.+.. ..+.+..++.++..+++.+.+...+.+.
T Consensus 38 LR~~l~~~l~~~~~~L~k~~~~l~~l~qkeRL~~dF~~l~~~fQ~~qr~y~ek~~ 92 (97)
T 1hs7_A 38 LRYKIETELIPNCTSVRDKIESNILIHQNGKLSADFKNLKTKYQSLQQSYNQRKS 92 (97)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHSTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444 444444444444442222 3445555555555555555555544443
No 252
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=90.34 E-value=1 Score=36.29 Aligned_cols=53 Identities=11% Similarity=0.116 Sum_probs=41.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010679 47 PPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG 99 (504)
Q Consensus 47 ~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~ 99 (504)
....++++|+.+..+|...+..++.|...+....++|+.++.++..|..++..
T Consensus 8 ~~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 8 RDQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678888888888888888888888888888888888888888877777655
No 253
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=90.32 E-value=0.73 Score=38.59 Aligned_cols=40 Identities=15% Similarity=0.257 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 010679 103 ERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNL 142 (504)
Q Consensus 103 e~E~eL~eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL 142 (504)
+++.+|+.|..+|..||.-....+.|+.+..-|..+|...
T Consensus 51 eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F 90 (96)
T 1t3j_A 51 HLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENF 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555554443
No 254
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=90.23 E-value=2.8 Score=33.85 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 126 EPVKLEFQKSKTEAQNLVVAREELIAKVHQL 156 (504)
Q Consensus 126 e~LkaELeqLr~ELqeL~aerqeL~aqvq~L 156 (504)
+.+..||..|+-.+.++.+++.+.+.++..-
T Consensus 22 E~L~qEi~~Lr~kv~elEnErlQyEkKLKsT 52 (81)
T 3qh9_A 22 EELLQELRHLKIKVEELENERNQYEWKLKAT 52 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444444444444444444444444443333
No 255
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=90.11 E-value=2.3 Score=33.91 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010679 59 HVEMQKLATENQRLAATHGTL 79 (504)
Q Consensus 59 ~eEIq~Le~e~qrLe~qi~~L 79 (504)
-.++++|..++.+|.....+|
T Consensus 8 gkevEnLi~EN~eLl~TKNaL 28 (77)
T 2w83_C 8 GREVENLILENTQLLETKNAL 28 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666665555444
No 256
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=89.87 E-value=0.88 Score=40.77 Aligned_cols=28 Identities=4% Similarity=0.022 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 010679 177 LESLRQEYHHCRGTYEYEKKFYNDHLES 204 (504)
Q Consensus 177 IeaLrqELq~LR~eLe~~kk~~~el~eq 204 (504)
++-+...++.++..++.+.+.+..+.++
T Consensus 100 ~~~l~~ri~~l~~~l~~l~~~l~~l~~~ 127 (151)
T 2zdi_C 100 ISFLEKRLKEYDEAIKKTQGALAELEKR 127 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444433333333333333
No 257
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=89.84 E-value=1.9 Score=38.53 Aligned_cols=31 Identities=3% Similarity=0.073 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 197 FYNDHLESLQVMEKNYITMATEVEKLRAELM 227 (504)
Q Consensus 197 ~~~el~eqlqemek~L~sme~EiekLraELe 227 (504)
+++.+.+.+..+++.+..+...+..++..|.
T Consensus 106 ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~ 136 (151)
T 2zdi_C 106 RLKEYDEAIKKTQGALAELEKRIGEVARKAQ 136 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444443333333
No 258
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=89.83 E-value=17 Score=36.03 Aligned_cols=17 Identities=12% Similarity=0.274 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010679 107 QMRNLTEKIAKMEAELK 123 (504)
Q Consensus 107 eL~eL~eki~kLEaEL~ 123 (504)
.++..+.+...+.+|+.
T Consensus 134 ~l~KAK~~Y~~r~ee~e 150 (279)
T 3qwe_A 134 ALRRAQLQYVQRSEDLR 150 (279)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444444443
No 259
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=89.81 E-value=1.3 Score=33.01 Aligned_cols=46 Identities=11% Similarity=0.133 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010679 53 QKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG 98 (504)
Q Consensus 53 qeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~ 98 (504)
.+|+.+..+|+.|..++..|..++..|+.++..++.|-.+...+|+
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4566666666666666667777777776666666666666655554
No 260
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=89.80 E-value=1.8 Score=40.11 Aligned_cols=22 Identities=9% Similarity=0.222 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010679 206 QVMEKNYITMATEVEKLRAELM 227 (504)
Q Consensus 206 qemek~L~sme~EiekLraELe 227 (504)
+++.+++..+..++...+.+..
T Consensus 116 ~aL~~Ei~~Lr~qL~~~R~k~~ 137 (175)
T 3lay_A 116 NAVAKEMESLGQKLDEQRVKRD 137 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444433
No 261
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=89.61 E-value=7.8 Score=32.15 Aligned_cols=19 Identities=37% Similarity=0.462 Sum_probs=8.3
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 010679 170 IPALLSELESLRQEYHHCR 188 (504)
Q Consensus 170 l~~L~~EIeaLrqELq~LR 188 (504)
+.+|..||..|+++|++++
T Consensus 69 v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 69 IKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 262
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=89.51 E-value=3.3 Score=33.70 Aligned_cols=41 Identities=15% Similarity=0.160 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 010679 172 ALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNY 212 (504)
Q Consensus 172 ~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L 212 (504)
++..+|+.|+.|+.+||-.++...-.+..++++.+++-..|
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dL 64 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQI 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555444444444444443333
No 263
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=89.34 E-value=1.4 Score=31.43 Aligned_cols=41 Identities=17% Similarity=0.323 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010679 58 QHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG 98 (504)
Q Consensus 58 ~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~ 98 (504)
++.+|.+|..++-+|+.+-..|+.-++.+++|+.+|+.++.
T Consensus 8 lrkkiarlkkdnlqlerdeqnlekiianlrdeiarleneva 48 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEVA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHh
Confidence 44555566666666666666666666666666666655543
No 264
>2etd_A LEMA protein; bromodomain-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.28A {Thermotoga maritima} SCOP: a.29.9.1
Probab=89.32 E-value=12 Score=34.39 Aligned_cols=10 Identities=20% Similarity=0.165 Sum_probs=3.7
Q ss_pred HHHHHHHHHh
Q 010679 180 LRQEYHHCRG 189 (504)
Q Consensus 180 LrqELq~LR~ 189 (504)
|+.||..++.
T Consensus 108 Lq~eL~~~En 117 (171)
T 2etd_A 108 LMDELAGTEN 117 (171)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 265
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=89.17 E-value=2.8 Score=31.40 Aligned_cols=28 Identities=18% Similarity=0.116 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 200 DHLESLQVMEKNYITMATEVEKLRAELM 227 (504)
Q Consensus 200 el~eqlqemek~L~sme~EiekLraELe 227 (504)
.+...+..+.+.+..+..+|.+++.+++
T Consensus 30 ~~k~~~~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 30 KAKEKINEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444443
No 266
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=89.12 E-value=1.3 Score=35.04 Aligned_cols=47 Identities=11% Similarity=0.072 Sum_probs=27.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 47 PPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQIL 93 (504)
Q Consensus 47 ~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L 93 (504)
....|+..|....+||+..+..++.|+.++.+...+|..++.+|+.+
T Consensus 20 ti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 20 SLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666666666666665555555555555555555555555444
No 267
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=89.08 E-value=1.7 Score=36.74 Aligned_cols=27 Identities=26% Similarity=0.230 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 62 MQKLATENQRLAATHGTLRQELAAAQH 88 (504)
Q Consensus 62 Iq~Le~e~qrLe~qi~~LkqELa~lqq 88 (504)
|+.|+.++...+.++...+++|..+++
T Consensus 37 ieeLQ~Ei~~~E~QL~iArQKLkdAe~ 63 (107)
T 2k48_A 37 LQELQENITAHEQQLVTARQKLKDAEK 63 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445444455444443
No 268
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus}
Probab=89.06 E-value=14 Score=34.35 Aligned_cols=14 Identities=14% Similarity=-0.045 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 010679 212 YITMATEVEKLRAE 225 (504)
Q Consensus 212 L~sme~EiekLraE 225 (504)
++.+....+.|...
T Consensus 201 ~~~l~~~W~~L~~l 214 (224)
T 2iak_A 201 RAAMQTQWSWILQL 214 (224)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 269
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=88.99 E-value=6.9 Score=31.29 Aligned_cols=13 Identities=15% Similarity=0.141 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 010679 148 ELIAKVHQLTQDL 160 (504)
Q Consensus 148 eL~aqvq~L~~EL 160 (504)
+|+..+..|...+
T Consensus 27 ~i~~~l~~L~~~v 39 (99)
T 3zbh_A 27 NVTELIARLDQMS 39 (99)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 270
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=88.97 E-value=3 Score=32.75 Aligned_cols=50 Identities=14% Similarity=0.130 Sum_probs=25.2
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 44 MMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQIL 93 (504)
Q Consensus 44 ~~p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L 93 (504)
+..+-..+...|..+++++...+.++.+|.+.+.--.+..+.+++||-.+
T Consensus 9 ~~~~~~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiisl 58 (75)
T 3a7o_A 9 IVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISG 58 (75)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHh
Confidence 34455666666666666666555555555554444444444444444433
No 271
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=88.97 E-value=5.9 Score=31.84 Aligned_cols=22 Identities=18% Similarity=0.413 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHH
Q 010679 111 LTEKIAKMEAELKTAEPVKLEF 132 (504)
Q Consensus 111 L~eki~kLEaEL~ele~LkaEL 132 (504)
|.+.+....+||..+...+.||
T Consensus 16 l~E~~~q~qaEl~sLrrT~~EL 37 (78)
T 3iv1_A 16 MKEEMDRAQAELNALKRTEEDL 37 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 3333444444444333333333
No 272
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=88.94 E-value=1.9 Score=36.19 Aligned_cols=76 Identities=17% Similarity=0.187 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 010679 52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLE 131 (504)
Q Consensus 52 EqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~LkaE 131 (504)
|++...+..+|..|..++++...+.+.|..-+....+ +-.+.+.. ..+.+|.++..+|+.|+.++..++...+|
T Consensus 14 eqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~-----nP~~GD~~-s~~~~L~e~~~kid~L~~el~K~q~~L~e 87 (98)
T 2ke4_A 14 EQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEK-----TPQMGDPA-SLEPQIAETLSNIERLKLEVQKYEAWLAE 87 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-----CGGGCCGG-GSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCccCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666555555555444322222111 11121111 12556666666666666666655555555
Q ss_pred HH
Q 010679 132 FQ 133 (504)
Q Consensus 132 Le 133 (504)
++
T Consensus 88 ~e 89 (98)
T 2ke4_A 88 AE 89 (98)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 273
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=88.93 E-value=18 Score=40.06 Aligned_cols=18 Identities=0% Similarity=0.169 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010679 208 MEKNYITMATEVEKLRAE 225 (504)
Q Consensus 208 mek~L~sme~EiekLraE 225 (504)
+.+++......++++..+
T Consensus 474 ~~~~~~~~~~~~~~~~~~ 491 (695)
T 2j69_A 474 LSRSASQYGASYNQITDQ 491 (695)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 274
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=88.87 E-value=1.9 Score=35.19 Aligned_cols=17 Identities=41% Similarity=0.665 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHhhh
Q 010679 81 QELAAAQHELQILHGQI 97 (504)
Q Consensus 81 qELa~lqqEL~~L~~~L 97 (504)
..|+.++.|+.+|+..+
T Consensus 27 ~Ql~~Lq~Ev~~LRGqi 43 (83)
T 2xdj_A 27 QQLSDNQSDIDSLRGQI 43 (83)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHH
Confidence 33333334444433333
No 275
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.80 E-value=3.6 Score=35.99 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 010679 136 KTEAQNLVVAREELIA 151 (504)
Q Consensus 136 r~ELqeL~aerqeL~a 151 (504)
+..|.++.....+|..
T Consensus 50 R~kl~~~~~~t~~l~k 65 (130)
T 2dnx_A 50 QENLQQLQHSTNQLAK 65 (130)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 276
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=88.74 E-value=8 Score=39.73 Aligned_cols=6 Identities=17% Similarity=0.119 Sum_probs=2.1
Q ss_pred HHHHHH
Q 010679 183 EYHHCR 188 (504)
Q Consensus 183 ELq~LR 188 (504)
|+..++
T Consensus 102 e~~~l~ 107 (365)
T 1gqe_A 102 ELDALE 107 (365)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 277
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=88.60 E-value=5.7 Score=39.59 Aligned_cols=155 Identities=13% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 010679 69 NQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREE 148 (504)
Q Consensus 69 ~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerqe 148 (504)
..++..-+..+ ++|...-++-..++.+-.. .|..|..+...+-..-.+.-.+..-+..+..+++.+-.....
T Consensus 26 ~~~~~~g~~~~-~el~~f~keRa~iE~~Yak-------~L~kLakk~~~~~~~~~e~gsl~~aw~~i~~e~e~~a~~H~~ 97 (320)
T 3m3w_A 26 VQRVEDGHRLC-GDLVSCFQERARIEKAYAQ-------QLADWARKWRGAVEKGPQYGTLEKAWHAFFTAAERLSELHLE 97 (320)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhccCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH-HHHHHHHHHH---------hhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---------
Q 010679 149 LIAKVHQ-LTQDLQRAHT---------DVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVME--------- 209 (504)
Q Consensus 149 L~aqvq~-L~~ELq~l~~---------elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqeme--------- 209 (504)
+...+.. +...|..+.. ...+...+...+..+++.++.+..+++..++.+...-.+.+...
T Consensus 98 ~a~~l~~~v~~~l~~~~k~~~~k~~~~~~ke~K~~~~~~~k~qk~~~~~~~~l~kaKk~Y~~~c~e~~~a~~~~~~~~~d 177 (320)
T 3m3w_A 98 VREKLHGPDSERVRTWQRGAFHRPVLGGFRASRAAEDGFRKAQKPWLKRLKEVEASKKSYHTARKDEKTAQTRESHAKAD 177 (320)
T ss_dssp HHHHHHTHHHHHHHHHHHHHTC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q ss_pred -----HHHHHHHHHHHHHHHHHHhccc
Q 010679 210 -----KNYITMATEVEKLRAELMNAPN 231 (504)
Q Consensus 210 -----k~L~sme~EiekLraELekle~ 231 (504)
++++.+...+++...++++.++
T Consensus 178 ~~~s~ke~~K~~~k~~k~~~~~~~a~~ 204 (320)
T 3m3w_A 178 SSMSQEQLRKLQERVGRCTKEAEKMKT 204 (320)
T ss_dssp CCC---CCSSSSSTTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
No 278
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=88.55 E-value=16 Score=34.09 Aligned_cols=35 Identities=11% Similarity=0.182 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQ 161 (504)
Q Consensus 127 ~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq 161 (504)
.+...+..++.-|.....++..|..++..|..++.
T Consensus 84 sLs~RLaRvenaL~~~~~Er~sL~~K~~~L~~Q~E 118 (190)
T 3thf_A 84 SLSERLAQTESSLETRQQERGALESKRDLLYEQME 118 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHccChhHHHHHHHHHHHHHHHHH
Confidence 33344444444444444455555555555544443
No 279
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=88.54 E-value=2.9 Score=35.08 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010679 105 ELQMRNLTEKIAKMEAELKT 124 (504)
Q Consensus 105 E~eL~eL~eki~kLEaEL~e 124 (504)
+..|.+..+-|.+|+-|++.
T Consensus 44 e~~l~EA~ell~qMelE~r~ 63 (102)
T 1vcs_A 44 EKQLEEARELLEQMDLEVRE 63 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33444444445555555443
No 280
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=88.50 E-value=14 Score=38.62 Aligned_cols=19 Identities=21% Similarity=0.330 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHhccccc
Q 010679 215 MATEVEKLRAELMNAPNVD 233 (504)
Q Consensus 215 me~EiekLraELekle~~~ 233 (504)
|..+.++|-.||.++..+.
T Consensus 134 LlDqRD~ll~eLS~~v~v~ 152 (463)
T 2d4y_A 134 LLDQRDQLVSELNKIVGVE 152 (463)
T ss_dssp HHHHHHHHHHHHHHHSCEE
T ss_pred hHHHHHHHHHHHHhhcCeE
Confidence 3444455556666666544
No 281
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=88.37 E-value=5.5 Score=33.40 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010679 104 RELQMRNLTEKIAKMEAELKTA 125 (504)
Q Consensus 104 ~E~eL~eL~eki~kLEaEL~el 125 (504)
.+..+.+..+-|.+|+-|++.+
T Consensus 54 ie~~ldEA~eLl~qMelE~r~~ 75 (102)
T 2qyw_A 54 FDEKQQEANETLAEMEEELRYA 75 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3445555555556666655543
No 282
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=88.23 E-value=2.7 Score=44.81 Aligned_cols=21 Identities=14% Similarity=0.188 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010679 200 DHLESLQVMEKNYITMATEVE 220 (504)
Q Consensus 200 el~eqlqemek~L~sme~Eie 220 (504)
++.++++++++++..++.++.
T Consensus 115 ~l~~~i~~le~~~~~~~~~~~ 135 (484)
T 3lss_A 115 DLSDQVAGLAKEAQQLEEERD 135 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333
No 283
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=88.16 E-value=8.3 Score=30.79 Aligned_cols=14 Identities=21% Similarity=0.124 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 010679 209 EKNYITMATEVEKL 222 (504)
Q Consensus 209 ek~L~sme~EiekL 222 (504)
.+.|......++..
T Consensus 76 ~~~L~~~a~~~~~~ 89 (99)
T 3zbh_A 76 GQQLHNSATILEDT 89 (99)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 284
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=88.12 E-value=2.4 Score=35.40 Aligned_cols=12 Identities=25% Similarity=0.387 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 010679 215 MATEVEKLRAEL 226 (504)
Q Consensus 215 me~EiekLraEL 226 (504)
++.||..-++-|
T Consensus 77 Le~EIatYrkLL 88 (95)
T 3mov_A 77 LDMEISAYRKLL 88 (95)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444333
No 285
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=88.00 E-value=0.96 Score=47.12 Aligned_cols=53 Identities=15% Similarity=0.122 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010679 178 ESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP 230 (504)
Q Consensus 178 eaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle 230 (504)
++++.|++.++++++.++..+++++.+++++.+++...+....+|..+|..++
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33334444444444444444444444444555555555555555555555554
No 286
>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}
Probab=87.87 E-value=34 Score=37.21 Aligned_cols=33 Identities=18% Similarity=0.077 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 53 QKIASQHVEMQKLATENQRLAATHGTLRQELAA 85 (504)
Q Consensus 53 qeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~ 85 (504)
++-..+..+++.|....+.+++++..|++..+.
T Consensus 12 ~~~~eI~~~v~~l~~~~q~~e~~~k~Le~~Qe~ 44 (585)
T 1y1u_A 12 QKHLQINQRFEELRLITQDTENELKKLQQTQEY 44 (585)
T ss_dssp CSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344555666666666666666666444443
No 287
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=87.72 E-value=20 Score=34.39 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=15.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 47 PPEVMEQKIASQHVEMQKLATENQR 71 (504)
Q Consensus 47 ~~~~LEqeLe~~~eEIq~Le~e~qr 71 (504)
.-..+|.+++..+..+.+|......
T Consensus 32 d~~~lE~r~d~~k~~~~kl~k~~~~ 56 (256)
T 1zww_A 32 DFKEMERKVDVTSRAVMEIMTKTIE 56 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466667777666666666555443
No 288
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=87.59 E-value=2.1 Score=44.77 Aligned_cols=25 Identities=8% Similarity=0.080 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 203 ESLQVMEKNYITMATEVEKLRAELM 227 (504)
Q Consensus 203 eqlqemek~L~sme~EiekLraELe 227 (504)
++.+++.+++..++.++.+++++|.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (421)
T 1ses_A 71 ARGKALGEEAKRLEEALREKEARLE 95 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444
No 289
>2ap3_A Conserved hypothetical protein; structural genomics, tetra helix, PSI, protein structure INI midwest center for structural genomics; 1.60A {Staphylococcus aureus subsp} SCOP: a.24.27.1
Probab=87.58 E-value=19 Score=33.89 Aligned_cols=6 Identities=17% Similarity=0.340 Sum_probs=2.2
Q ss_pred HHHHHH
Q 010679 82 ELAAAQ 87 (504)
Q Consensus 82 ELa~lq 87 (504)
.|..+.
T Consensus 41 kL~~LE 46 (199)
T 2ap3_A 41 KIAELD 46 (199)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 290
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=87.30 E-value=17 Score=33.06 Aligned_cols=17 Identities=12% Similarity=0.032 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010679 140 QNLVVAREELIAKVHQL 156 (504)
Q Consensus 140 qeL~aerqeL~aqvq~L 156 (504)
........++...+...
T Consensus 110 ~~F~~~~~~~~~Wl~~~ 126 (214)
T 1s35_A 110 QEFQKDAKQAEAILSNQ 126 (214)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 291
>2yfa_A MCPS, methyl-accepting chemotaxis transducer; receptor, chemoreceptor; 1.80A {Pseudomonas putida} PDB: 2yfb_A
Probab=87.14 E-value=20 Score=33.62 Aligned_cols=45 Identities=16% Similarity=0.157 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 78 TLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKT 124 (504)
Q Consensus 78 ~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~e 124 (504)
...+.+..+...|..+...+.. .+....+..+.+.+..++.....
T Consensus 53 ~~~~~l~~~~~~l~~~~~~~~~--~~~~~~l~~i~~~~~~Y~~~f~~ 97 (258)
T 2yfa_A 53 NTLAKLDAFSKQQAYLATTFKS--PENVKLLGELGDTISAYKLSLNK 97 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCC--cccHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555444332 11222344444444444444433
No 292
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=87.11 E-value=0.99 Score=37.50 Aligned_cols=12 Identities=25% Similarity=0.440 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHh
Q 010679 217 TEVEKLRAELMN 228 (504)
Q Consensus 217 ~EiekLraELek 228 (504)
.||..|+.+|+.
T Consensus 75 eEI~rLr~eLe~ 86 (92)
T 3vp9_A 75 EEIKHLKLGLEQ 86 (92)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 293
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=87.05 E-value=2.4 Score=39.49 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 69 NQRLAATHGTLRQELAAAQHELQI 92 (504)
Q Consensus 69 ~qrLe~qi~~LkqELa~lqqEL~~ 92 (504)
+++|..+...|.++|+...+|+..
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~ 45 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQ 45 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433333333
No 294
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=86.99 E-value=2.3 Score=37.14 Aligned_cols=13 Identities=8% Similarity=0.158 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 010679 147 EELIAKVHQLTQD 159 (504)
Q Consensus 147 qeL~aqvq~L~~E 159 (504)
..|.-+++.++..
T Consensus 58 d~L~lQ~esmeaa 70 (130)
T 3cl3_D 58 DQLRMQGQSVEAA 70 (130)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333344444333
No 295
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=86.99 E-value=19 Score=33.22 Aligned_cols=23 Identities=17% Similarity=0.109 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHH
Q 010679 175 SELESLRQEYHHCRGTYEYEKKF 197 (504)
Q Consensus 175 ~EIeaLrqELq~LR~eLe~~kk~ 197 (504)
.++=.+..|-..++..|-.+.+.
T Consensus 115 ~Qll~l~Aed~AieDaIy~L~~a 137 (174)
T 2p22_A 115 NQLYNLVAQDYALTDTIECLSRM 137 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444433333
No 296
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=86.99 E-value=0.51 Score=46.07 Aligned_cols=35 Identities=9% Similarity=-0.001 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679 197 FYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 231 (504)
Q Consensus 197 ~~~el~eqlqemek~L~sme~EiekLraELekle~ 231 (504)
++..+.++.+.+.+.|..+++||.+|++||++|..
T Consensus 62 ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 62 RIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33344444444555566666777777777777653
No 297
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=86.82 E-value=0.99 Score=45.33 Aligned_cols=6 Identities=67% Similarity=0.933 Sum_probs=2.2
Q ss_pred HHHHHH
Q 010679 155 QLTQDL 160 (504)
Q Consensus 155 ~L~~EL 160 (504)
.+..+|
T Consensus 115 ~~~~eL 120 (302)
T 2y3a_B 115 KLEQDL 120 (302)
T ss_dssp HHHHHH
T ss_pred cchhhh
Confidence 333333
No 298
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae}
Probab=86.60 E-value=27 Score=34.62 Aligned_cols=12 Identities=8% Similarity=0.404 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q 010679 216 ATEVEKLRAELM 227 (504)
Q Consensus 216 e~EiekLraELe 227 (504)
++||+..-.++.
T Consensus 257 e~eI~~Fa~~~~ 268 (287)
T 3g9g_A 257 QSEIDRFAKDAS 268 (287)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 455555554443
No 299
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=86.53 E-value=11 Score=30.22 Aligned_cols=15 Identities=20% Similarity=0.322 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 010679 147 EELIAKVHQLTQDLQ 161 (504)
Q Consensus 147 qeL~aqvq~L~~ELq 161 (504)
.++...+..|...|.
T Consensus 25 ~~i~~~l~~L~~~~~ 39 (98)
T 3gwk_C 25 QQVTEVLNLLTQEQA 39 (98)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 300
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=86.46 E-value=48 Score=37.45 Aligned_cols=13 Identities=15% Similarity=0.156 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHhc
Q 010679 217 TEVEKLRAELMNA 229 (504)
Q Consensus 217 ~EiekLraELekl 229 (504)
-|.++.++.++.+
T Consensus 790 ie~~kf~~~v~ai 802 (861)
T 2zuo_A 790 VEAKKFKEMTEAL 802 (861)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhh
Confidence 3444455544443
No 301
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=86.45 E-value=1.9 Score=44.92 Aligned_cols=53 Identities=19% Similarity=0.174 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 172 ALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRA 224 (504)
Q Consensus 172 ~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLra 224 (504)
++..+|+.|++++.+++.+++.++..+.++.+++.+.+.....+-.+++.|+.
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34444444444444444445555555555555555555444455555555443
No 302
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=86.44 E-value=9.7 Score=32.95 Aligned_cols=6 Identities=0% Similarity=0.689 Sum_probs=2.2
Q ss_pred HHHHHH
Q 010679 219 VEKLRA 224 (504)
Q Consensus 219 iekLra 224 (504)
|++++.
T Consensus 116 Iqkikk 121 (125)
T 4g2k_A 116 IDQIKK 121 (125)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 303
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=86.34 E-value=13 Score=39.30 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010679 106 LQMRNLTEKIAKMEAEL 122 (504)
Q Consensus 106 ~eL~eL~eki~kLEaEL 122 (504)
.++.+|...+..++.++
T Consensus 299 ~~~~~L~~~l~~v~~~l 315 (483)
T 2j1d_G 299 KEISTLRSGLKAVETEL 315 (483)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444433333
No 304
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=86.26 E-value=13 Score=32.28 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010679 107 QMRNLTEKIAKMEAELK 123 (504)
Q Consensus 107 eL~eL~eki~kLEaEL~ 123 (504)
.+..|..-..+.+++|.
T Consensus 6 avdkLe~mFqKA~sDLd 22 (123)
T 4aj5_K 6 EVDKLELMFQKAESDLD 22 (123)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHH
Confidence 33334444444444443
No 305
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=86.16 E-value=11 Score=34.21 Aligned_cols=16 Identities=13% Similarity=0.347 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 010679 108 MRNLTEKIAKMEAELK 123 (504)
Q Consensus 108 L~eL~eki~kLEaEL~ 123 (504)
+..+...|.+++..+.
T Consensus 45 v~~I~~~i~~i~~~v~ 60 (180)
T 1s94_A 45 VEEIRAMIDKISDNVD 60 (180)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 306
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=86.01 E-value=7.2 Score=41.36 Aligned_cols=45 Identities=9% Similarity=0.040 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 176 ELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 227 (504)
Q Consensus 176 EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELe 227 (504)
|+++++.|+++|++++++++ +-+..-++..+-+..|+..++++..
T Consensus 417 e~~kl~~E~~~l~~~i~~l~-------~iL~~~~~~~~~i~~el~~i~~~yg 461 (470)
T 3ilw_A 417 ERQRIIDDLAKIEAEIADLE-------DILAKPERQRGIVRDELAEIVDRHG 461 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHhCCHHHHHHHHHHHHHHHHHHhC
Confidence 34555555555555544333 3333333334445556666655554
No 307
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=85.91 E-value=2.6 Score=29.97 Aligned_cols=30 Identities=20% Similarity=0.186 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 198 YNDHLESLQVMEKNYITMATEVEKLRAELM 227 (504)
Q Consensus 198 ~~el~eqlqemek~L~sme~EiekLraELe 227 (504)
.-.++..-+.+++-+..+..||.+|+.|++
T Consensus 19 nlqlerdeqnlekiianlrdeiarleneva 48 (52)
T 3he5_B 19 NLQLERDEQNLEKIIANLRDEIARLENEVA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhhHhhHHHHHHHHHHHHHHHHHHHh
Confidence 333444444455555555555555555554
No 308
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=85.91 E-value=19 Score=32.16 Aligned_cols=16 Identities=6% Similarity=-0.020 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 010679 204 SLQVMEKNYITMATEV 219 (504)
Q Consensus 204 qlqemek~L~sme~Ei 219 (504)
++.+.+.++..|-.+|
T Consensus 90 ~y~~Ae~~l~~LL~~I 105 (151)
T 2pih_A 90 EFRDSQMEVNDLLQLV 105 (151)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444444
No 309
>2fup_A Hypothetical protein PA3352; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1
Probab=85.87 E-value=12 Score=32.94 Aligned_cols=6 Identities=17% Similarity=0.329 Sum_probs=0.0
Q ss_pred CCCCCC
Q 010679 238 DGSYGG 243 (504)
Q Consensus 238 ~~~yg~ 243 (504)
...||.
T Consensus 136 ~~~Y~~ 141 (157)
T 2fup_A 136 PSLYDS 141 (157)
T ss_dssp ------
T ss_pred ccCcCC
Confidence 345664
No 310
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}
Probab=85.61 E-value=25 Score=33.40 Aligned_cols=15 Identities=7% Similarity=0.308 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHh
Q 010679 175 SELESLRQEYHHCRG 189 (504)
Q Consensus 175 ~EIeaLrqELq~LR~ 189 (504)
.|++.++.+++..+.
T Consensus 165 eEl~~A~~~fe~~~e 179 (240)
T 2z0v_A 165 EEVRQAVEKFEESKE 179 (240)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444443333
No 311
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=85.60 E-value=5.8 Score=30.95 Aligned_cols=44 Identities=9% Similarity=0.166 Sum_probs=16.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 182 QEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAE 225 (504)
Q Consensus 182 qELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraE 225 (504)
.||++|..-+..++.++....+--+.|+.++...+..+..|...
T Consensus 17 ~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~ 60 (74)
T 2q6q_A 17 NEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKK 60 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhh
Confidence 33333333333333333333333333344433344444444433
No 312
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A {Helicobacter pylori} PDB: 4g0h_A
Probab=85.54 E-value=25 Score=37.83 Aligned_cols=14 Identities=43% Similarity=0.582 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 010679 148 ELIAKVHQLTQDLQ 161 (504)
Q Consensus 148 eL~aqvq~L~~ELq 161 (504)
++..+|+.|.+.+.
T Consensus 739 Ev~dKIDNLNQAls 752 (876)
T 4dvy_P 739 EWISKVENLNAALN 752 (876)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444544444443
No 313
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=85.46 E-value=5.7 Score=37.45 Aligned_cols=45 Identities=11% Similarity=0.103 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 105 ELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAK 152 (504)
Q Consensus 105 E~eL~eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aq 152 (504)
+..|..|+.+|...|.+ +..++.++..+...+......+..|+..
T Consensus 104 ~~~ia~~e~Rit~~e~~---i~~l~~~v~~ld~~vt~~et~Isal~~D 148 (242)
T 3c9i_A 104 TKAITALNVRVTTAEGE---IASLQTNVSALDGRVTTAENNISALQAD 148 (242)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhheeeccccc---chhhhhhhhhhcccccccccchhhhhhh
Confidence 34455555555555554 4456666777776666665555555443
No 314
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0
Probab=85.44 E-value=2.9 Score=36.92 Aligned_cols=8 Identities=0% Similarity=0.140 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 010679 50 VMEQKIAS 57 (504)
Q Consensus 50 ~LEqeLe~ 57 (504)
.|.+++..
T Consensus 16 ~I~~r~~~ 23 (149)
T 3f31_A 16 DIQERRQQ 23 (149)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 315
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=85.42 E-value=19 Score=31.76 Aligned_cols=17 Identities=12% Similarity=0.165 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHhccc
Q 010679 215 MATEVEKLRAELMNAPN 231 (504)
Q Consensus 215 me~EiekLraELekle~ 231 (504)
+...+...+.-|.-+..
T Consensus 115 i~~~l~~~~~~L~~L~~ 131 (154)
T 3opc_A 115 IAVNLRHTQESLDALRQ 131 (154)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34455555556666653
No 316
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=85.40 E-value=1.8 Score=35.04 Aligned_cols=30 Identities=17% Similarity=0.285 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 131 EFQKSKTEAQNLVVAREELIAKVHQLTQDL 160 (504)
Q Consensus 131 ELeqLr~ELqeL~aerqeL~aqvq~L~~EL 160 (504)
+++.|+.++.+|+....++..++..|.++|
T Consensus 16 di~eLkkevkKL~~~A~q~kmdLHDLaEdL 45 (81)
T 3csx_A 16 AVADLKKKVRKLNSKAGQMKMDLHDLAEGL 45 (81)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 344455555555555555555555555443
No 317
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=85.18 E-value=3.4 Score=30.57 Aligned_cols=17 Identities=18% Similarity=0.163 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 010679 212 YITMATEVEKLRAELMN 228 (504)
Q Consensus 212 L~sme~EiekLraELek 228 (504)
|.....+|.+|+++|++
T Consensus 32 L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 32 LKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444444443
No 318
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=85.11 E-value=11 Score=33.34 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010679 62 MQKLATENQRLAATHGTLRQELA 84 (504)
Q Consensus 62 Iq~Le~e~qrLe~qi~~LkqELa 84 (504)
+..++...+.++.++..+..+|.
T Consensus 23 L~dveksv~~~~k~l~~l~~el~ 45 (135)
T 1i6z_A 23 LKDLEVSAEKIANHLQELNKELS 45 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444443333
No 319
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=85.08 E-value=16 Score=32.46 Aligned_cols=18 Identities=11% Similarity=0.165 Sum_probs=6.8
Q ss_pred HhHHHHHHHHHHHHHHHH
Q 010679 125 AEPVKLEFQKSKTEAQNL 142 (504)
Q Consensus 125 le~LkaELeqLr~ELqeL 142 (504)
-..|.++|+.+..++.+|
T Consensus 61 Yk~Lhaev~~v~~~F~~L 78 (140)
T 1xaw_A 61 YKSLQSVLDEINKELSRL 78 (140)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333434433333333333
No 320
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=84.86 E-value=4.3 Score=38.98 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHhcc
Q 010679 214 TMATEVEKLRAELMNAP 230 (504)
Q Consensus 214 sme~EiekLraELekle 230 (504)
.++.+++.++..++++.
T Consensus 116 ~a~a~l~~a~~~l~~~~ 132 (277)
T 2f1m_A 116 AAKAAVETARINLAYTK 132 (277)
T ss_dssp HHHHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHhhcCE
Confidence 33444555566666543
No 321
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=84.70 E-value=15 Score=30.75 Aligned_cols=18 Identities=17% Similarity=0.250 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010679 209 EKNYITMATEVEKLRAEL 226 (504)
Q Consensus 209 ek~L~sme~EiekLraEL 226 (504)
..++.....++++|+.++
T Consensus 84 ~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 84 MSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 333444444444444443
No 322
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=84.65 E-value=4.5 Score=30.05 Aligned_cols=10 Identities=0% Similarity=0.155 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 010679 179 SLRQEYHHCR 188 (504)
Q Consensus 179 aLrqELq~LR 188 (504)
..+.|..++-
T Consensus 36 ~ak~eA~RAN 45 (52)
T 1jcd_A 36 AAKDDAARAN 45 (52)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334443333
No 323
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=84.60 E-value=11 Score=31.17 Aligned_cols=13 Identities=8% Similarity=0.330 Sum_probs=4.9
Q ss_pred HHHHHH-HHHHHHh
Q 010679 216 ATEVEK-LRAELMN 228 (504)
Q Consensus 216 e~Eiek-LraELek 228 (504)
.+++.+ |+.++.+
T Consensus 78 k~dl~~~lk~~lk~ 91 (97)
T 3onj_A 78 KKTIQSDIKRPLQS 91 (97)
T ss_dssp HHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 333333 3333333
No 324
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=84.52 E-value=0.96 Score=44.13 Aligned_cols=19 Identities=5% Similarity=0.302 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010679 107 QMRNLTEKIAKMEAELKTA 125 (504)
Q Consensus 107 eL~eL~eki~kLEaEL~el 125 (504)
.++.+..++.+|++|++.+
T Consensus 76 ~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 76 TLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4444555555555555443
No 325
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=84.50 E-value=16 Score=30.27 Aligned_cols=12 Identities=8% Similarity=0.318 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 010679 205 LQVMEKNYITMA 216 (504)
Q Consensus 205 lqemek~L~sme 216 (504)
+++++.++..+.
T Consensus 69 v~elqgEI~~Ln 80 (99)
T 3ni0_A 69 IKELENEVTKLN 80 (99)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 326
>2p01_A Alpha-2-macroglobulin receptor-associated protein; RAP, cell adhesion; NMR {Homo sapiens} PDB: 2p03_A
Probab=84.40 E-value=36 Score=34.14 Aligned_cols=57 Identities=21% Similarity=0.250 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010679 174 LSELESLRQEYHHCRGTYEYEKKFYNDHL----------------------ESLQVMEKNYITMATEVEKLRAELMNAP 230 (504)
Q Consensus 174 ~~EIeaLrqELq~LR~eLe~~kk~~~el~----------------------eqlqemek~L~sme~EiekLraELekle 230 (504)
..||+.++.||.+.+..|..++--.+++. +.++.|+.++..+.+.|++|...|+...
T Consensus 237 ~~ELeSlK~EL~HfE~rL~KlrH~~~El~l~~~k~k~~e~~g~~~~~~~~~~k~~~leek~Kk~~rKV~Kl~~~Le~rI 315 (323)
T 2p01_A 237 DKELEAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEGRTKELGYTVKKHLQDLSGRI 315 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888877776665442222222 2245677777777777777777777644
No 327
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=84.38 E-value=9.4 Score=34.39 Aligned_cols=7 Identities=14% Similarity=0.544 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 010679 177 LESLRQE 183 (504)
Q Consensus 177 IeaLrqE 183 (504)
++.++..
T Consensus 75 i~~iq~q 81 (150)
T 4dci_A 75 VANIQQQ 81 (150)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 328
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=84.29 E-value=0.88 Score=47.74 Aligned_cols=12 Identities=17% Similarity=0.476 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 010679 149 LIAKVHQLTQDL 160 (504)
Q Consensus 149 L~aqvq~L~~EL 160 (504)
|+++++.+.++|
T Consensus 49 l~~~~n~~sk~i 60 (425)
T 2dq3_A 49 LRSERNKLSKEI 60 (425)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 329
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=84.07 E-value=24 Score=35.68 Aligned_cols=146 Identities=14% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--
Q 010679 93 LHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI-- 170 (504)
Q Consensus 93 L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql-- 170 (504)
+..-++.+.......++.+.++++++|.++-.-.. .....++..++.++-.+...+..+..-+.++.......
T Consensus 182 l~~lld~ivd~y~~~l~~l~~~id~lE~~v~~~~~-----~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~~ 256 (363)
T 2iub_A 182 LYSLIDALVDDYFVLLEKIDDEIDVLEEEVLERPE-----KETVQRTHQLKRNLVELRKTIWPLREVLSSLYRDVPPLIE 256 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCCCCCCC
Q 010679 171 PALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRAADGSYGGATGN 247 (504)
Q Consensus 171 ~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~~~~~~~~~~yg~~~~~ 247 (504)
++.+..+..+..++.++...++..+..+..+.+....+..+.....-.+=.+-+-+=- .-.-..+-||||+.+
T Consensus 257 ~~~~~~lrDv~d~~~~~~e~~~~~re~l~~l~d~~~s~is~~~N~imk~LTiit~Ifl----P~T~IaGiyGMNf~~ 329 (363)
T 2iub_A 257 KETVPYFRDVYDHTIQIADTVETFRDIVSGLLDVYLSSVSNKTNEVMKVLTIIATIFM----PLTFIAGIYGMNFEY 329 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHTTSCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhcccCCC
No 330
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=83.70 E-value=3.2 Score=32.78 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 132 FQKSKTEAQNLVVAREELIAKVHQLTQD 159 (504)
Q Consensus 132 LeqLr~ELqeL~aerqeL~aqvq~L~~E 159 (504)
++.++.++.+|+....++..++..|.++
T Consensus 5 i~eLkkevkKL~~~A~q~kmdLHDLaEd 32 (71)
T 2js5_A 5 AEELKAKLKKLNAQATALKMDLHDLAED 32 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhcc
Confidence 4444455555554444444444444433
No 331
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=83.67 E-value=40 Score=34.07 Aligned_cols=27 Identities=4% Similarity=-0.011 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 51 MEQKIASQHVEMQKLATENQRLAATHG 77 (504)
Q Consensus 51 LEqeLe~~~eEIq~Le~e~qrLe~qi~ 77 (504)
....|...++++..++..+.+|.....
T Consensus 19 FR~~l~~~E~~~~~l~~~l~kl~k~~~ 45 (385)
T 2q13_A 19 TRSLLGVFEEDATAISNYMNQLYQAMH 45 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333
No 332
>1r8i_A TRAC; VIRB5, helical bundle, structural protein; 3.00A {Escherichia coli} SCOP: a.8.7.1
Probab=83.67 E-value=1.9 Score=40.81 Aligned_cols=25 Identities=12% Similarity=0.246 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 71 RLAATHGTLRQELAAAQHELQILHG 95 (504)
Q Consensus 71 rLe~qi~~LkqELa~lqqEL~~L~~ 95 (504)
++..+++.++++|..+++.+..+..
T Consensus 19 q~~~Ql~~~k~Ql~q~k~qy~sltG 43 (213)
T 1r8i_A 19 QMAQQLEQLKSQLETQKNMYESMAK 43 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3333444444444444444444433
No 333
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=83.62 E-value=5.2 Score=30.37 Aligned_cols=45 Identities=22% Similarity=0.293 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILH 94 (504)
Q Consensus 50 ~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~ 94 (504)
++...|...+.+|+.|..-+..|.+++..++.+|..++.|-..|+
T Consensus 17 evK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 17 ELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 455667777778888888788888777777777777666655443
No 334
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=83.54 E-value=4.3 Score=43.57 Aligned_cols=45 Identities=9% Similarity=0.125 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 177 IeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELek 228 (504)
+++|++|+++++.+ ++++++-+..-++...-+..|+..++++...
T Consensus 456 ~~kl~~E~~~l~~e-------i~~l~~iL~~~~~~~~~i~~el~~i~~~yg~ 500 (514)
T 2inr_A 456 IVALEGEHKELEAL-------IKQLRHILDNHDALLNVIKEELNEIKKKFKS 500 (514)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHhCCHHHHHHHHHHHHHHHHHHcCC
Confidence 44444444444444 3344444443333444556666666666554
No 335
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=83.45 E-value=26 Score=35.02 Aligned_cols=145 Identities=13% Similarity=0.101 Sum_probs=0.0
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH---HHHHHHhhhc----cc-hHHHHHHHHHHH
Q 010679 44 MMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQE---LAAAQH---ELQILHGQIG----GM-KSERELQMRNLT 112 (504)
Q Consensus 44 ~~p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqE---La~lqq---EL~~L~~~L~----~l-~ae~E~eL~eL~ 112 (504)
++.....+++.+..+..++..+..++.+|..++..|++. ++.+.. .|. +...+. .+ ..+...++....
T Consensus 90 ~~~~~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~p~~~~ld-~~~~~g~~~g~ip~~~~~~~~~~~l 168 (357)
T 3rrk_A 90 FTGSLEEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLAALAHGLD-ESPRLGVIPFLVAKPEELEAVRKAL 168 (357)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT-TCTTEEEEEEEESCHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhccCC-ccceeeeeeEEecChhhHHHHHHHH
Q ss_pred HHHHHH--------------------HHHHHHHhHHHHH-----------HH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 113 EKIAKM--------------------EAELKTAEPVKLE-----------FQ--KSKTEAQNLVVAREELIAKVHQLTQD 159 (504)
Q Consensus 113 eki~kL--------------------EaEL~ele~LkaE-----------Le--qLr~ELqeL~aerqeL~aqvq~L~~E 159 (504)
.+...- +....++..+... .. .....+.++..++++|..+++.++.+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~v~~il~s~~f~~~~~p~~~~~~~p~~~l~~l~~~i~~l~~~l~~~~~~ 248 (357)
T 3rrk_A 169 QEALADRFVLEAEPLENQLAALVVVKRSELEAARSSLSRLGLAELRFPGAYGAMPLGKAAARMKERARLAPEELVGIREE 248 (357)
T ss_dssp HHHHTTSCEEEEEECSSSEEEEEEEEGGGHHHHHHHHHTTTCCBCCCCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCeEEEEeecCCCcEEEEEEEEHHHHHHHHHHHHHCCCeeccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHh-hhhhhHHHHHHHHHHHHHHHHHh
Q 010679 160 LQRAHTD-VQQIPALLSELESLRQEYHHCRG 189 (504)
Q Consensus 160 Lq~l~~e-lqql~~L~~EIeaLrqELq~LR~ 189 (504)
|..+..+ ...+..+...+...+...+.+..
T Consensus 249 l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 279 (357)
T 3rrk_A 249 VARLSRESGEALIALWTRAKDEVARYKAVAD 279 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 336
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=83.22 E-value=18 Score=38.29 Aligned_cols=10 Identities=20% Similarity=0.405 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 010679 147 EELIAKVHQL 156 (504)
Q Consensus 147 qeL~aqvq~L 156 (504)
.+|..++..|
T Consensus 426 ~~l~~~i~~l 435 (470)
T 3ilw_A 426 AKIEAEIADL 435 (470)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 337
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=83.00 E-value=15 Score=30.45 Aligned_cols=15 Identities=7% Similarity=0.089 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 010679 51 MEQKIASQHVEMQKL 65 (504)
Q Consensus 51 LEqeLe~~~eEIq~L 65 (504)
+++++......++.+
T Consensus 11 V~~D~~~ql~~l~~~ 25 (95)
T 2c5k_T 11 VVKDTKEQLNRINNY 25 (95)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444434333
No 338
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=82.99 E-value=2.7 Score=43.85 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=23.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010679 181 RQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP 230 (504)
Q Consensus 181 rqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle 230 (504)
+.|+.++++.++.+++.+.++..++++++++|...+.+..+|..+|..++
T Consensus 9 ~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 9 STEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33333333333333333444444444444444444555555555655554
No 339
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=82.96 E-value=4.6 Score=34.51 Aligned_cols=13 Identities=15% Similarity=0.335 Sum_probs=5.6
Q ss_pred ChHHHHHHHHHHH
Q 010679 47 PPEVMEQKIASQH 59 (504)
Q Consensus 47 ~~~~LEqeLe~~~ 59 (504)
.++.|+.+|+...
T Consensus 23 ~ieeLq~Ei~~~E 35 (113)
T 4fi5_A 23 TMEELQREINAHE 35 (113)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 3444444444333
No 340
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=82.94 E-value=0.99 Score=28.32 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 62 MQKLATENQRLAATHGTLRQELAAA 86 (504)
Q Consensus 62 Iq~Le~e~qrLe~qi~~LkqELa~l 86 (504)
|++|...+.+|..++..|+-+++++
T Consensus 2 irrlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 4455555666666555555555443
No 341
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=82.84 E-value=3.3 Score=30.81 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=6.3
Q ss_pred hHHHHHHHHHHHHHH
Q 010679 126 EPVKLEFQKSKTEAQ 140 (504)
Q Consensus 126 e~LkaELeqLr~ELq 140 (504)
+.++...++++..++
T Consensus 28 eelkkkweelkkkie 42 (67)
T 1lq7_A 28 EELKKKWEELKKKIE 42 (67)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444333
No 342
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=82.79 E-value=4.7 Score=44.91 Aligned_cols=46 Identities=13% Similarity=0.008 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 176 ELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 176 EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELek 228 (504)
|++++++|+++|+++++ ++++-+..-++.+..+.+|+.+++++...
T Consensus 403 e~~kl~~E~~eL~~~i~-------~l~~iL~~~~~l~~~i~~EL~~i~~kygd 448 (716)
T 1zvu_A 403 EEMKIRGEQSELEKERD-------QLQGILASERKMNNLLKKELQADAQAYGD 448 (716)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHhCCHHHHHHHHHHHHHHHHHHhCC
Confidence 34455555555554444 44444444444445556666666666654
No 343
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=82.49 E-value=16 Score=30.46 Aligned_cols=14 Identities=0% Similarity=-0.054 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHhh
Q 010679 177 LESLRQEYHHCRGT 190 (504)
Q Consensus 177 IeaLrqELq~LR~e 190 (504)
|..+..+|+.|+.+
T Consensus 64 L~e~~~kid~L~~e 77 (98)
T 2ke4_A 64 IAETLSNIERLKLE 77 (98)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 344
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=82.43 E-value=45 Score=33.77 Aligned_cols=26 Identities=15% Similarity=0.017 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 48 PEVMEQKIASQHVEMQKLATENQRLA 73 (504)
Q Consensus 48 ~~~LEqeLe~~~eEIq~Le~e~qrLe 73 (504)
.+.+..-|..+..-+..|.....++.
T Consensus 170 ~~~~~~~~~~l~~~~~~l~~~~~~~~ 195 (366)
T 3dyt_A 170 CEAVGKFTKAMDDGVKELLTVGQEHW 195 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555544444443
No 345
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=82.38 E-value=2.7 Score=40.46 Aligned_cols=11 Identities=18% Similarity=0.217 Sum_probs=4.4
Q ss_pred HHHHHHHHHHh
Q 010679 218 EVEKLRAELMN 228 (504)
Q Consensus 218 EiekLraELek 228 (504)
+++.++++|+.
T Consensus 113 ~l~~a~a~l~~ 123 (277)
T 2f1m_A 113 AVTAAKAAVET 123 (277)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 346
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=82.17 E-value=2.9 Score=46.27 Aligned_cols=11 Identities=9% Similarity=0.051 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 010679 53 QKIASQHVEMQ 63 (504)
Q Consensus 53 qeLe~~~eEIq 63 (504)
++|+...++..
T Consensus 527 ~ei~~~~~~~~ 537 (675)
T 3d2f_A 527 KKLNELIEKEN 537 (675)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444333
No 347
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=82.15 E-value=48 Score=33.93 Aligned_cols=48 Identities=17% Similarity=0.233 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 010679 48 PEVMEQKIASQHVEMQKLATENQRLAATH-GTLRQELAAAQHELQILHG 95 (504)
Q Consensus 48 ~~~LEqeLe~~~eEIq~Le~e~qrLe~qi-~~LkqELa~lqqEL~~L~~ 95 (504)
.+.++.-|..+..-+..|....+++...+ ..++.++..+-..+..+..
T Consensus 190 ~~~~~~~~~~l~~~~~~l~~~~~~~~~r~~~~~~~e~~~l~~~l~~l~~ 238 (386)
T 4akv_A 190 VDTFKAFSKKMDDSVLQLSTVASELVRKHVGGFRKEFQKLGSAFQAISH 238 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555444444332 2344444444444444433
No 348
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=82.08 E-value=7 Score=29.16 Aligned_cols=12 Identities=8% Similarity=0.163 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 010679 52 EQKIASQHVEMQ 63 (504)
Q Consensus 52 EqeLe~~~eEIq 63 (504)
+..+..+.+++.
T Consensus 11 ~~~~~~~~~~~~ 22 (60)
T 3htk_A 11 ENQVEELTEKCS 22 (60)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 349
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=82.05 E-value=20 Score=41.58 Aligned_cols=15 Identities=7% Similarity=-0.059 Sum_probs=7.3
Q ss_pred ChHHHHHHHHHHHHH
Q 010679 47 PPEVMEQKIASQHVE 61 (504)
Q Consensus 47 ~~~~LEqeLe~~~eE 61 (504)
....||+..+....+
T Consensus 750 ~l~~LE~~R~~~l~~ 764 (1010)
T 1g8x_A 750 QLARIEEAREQRLGS 764 (1010)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHH
Confidence 345565555544433
No 350
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=81.71 E-value=3.5 Score=33.09 Aligned_cols=42 Identities=12% Similarity=0.079 Sum_probs=16.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 186 HCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 227 (504)
Q Consensus 186 ~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELe 227 (504)
+|+..+.+....+++|.+.+-...+.+..+.+.+..|...+.
T Consensus 18 ~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 18 ELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444433333444444444444444444433
No 351
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=81.70 E-value=8.2 Score=42.81 Aligned_cols=45 Identities=13% Similarity=0.084 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 177 IeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELek 228 (504)
++++++|++++.++++.+ ++-+..-.+-...+..|+..++++...
T Consensus 639 ~~kl~~E~~~l~~~i~~l-------~~iL~~~~~~~~~i~~el~~i~~~yg~ 683 (692)
T 2xcs_B 639 RDKIEAEYNELLNYISEL-------ETILADEEVLLQLVRDELTEIRDRFGD 683 (692)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHhCCHHHHHHHHHHHHHHHHHHcCC
Confidence 444445555544444433 333333333334455666666555544
No 352
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=81.68 E-value=16 Score=41.15 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 010679 107 QMRNLTEKIAKMEAEL 122 (504)
Q Consensus 107 eL~eL~eki~kLEaEL 122 (504)
++..+..++.+++.++
T Consensus 402 ~l~~~~~~~~~~~~~~ 417 (854)
T 1qvr_A 402 EIDALERKKLQLEIER 417 (854)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 353
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=81.65 E-value=54 Score=34.16 Aligned_cols=15 Identities=13% Similarity=0.293 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHH
Q 010679 65 LATENQRLAATHGTL 79 (504)
Q Consensus 65 Le~e~qrLe~qi~~L 79 (504)
+..++..|+.++..+
T Consensus 195 ll~el~~le~elA~~ 209 (413)
T 4hpq_C 195 FTNEADQLEQELADF 209 (413)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 445555666555554
No 354
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=81.50 E-value=5.6 Score=29.68 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHH
Q 010679 176 ELESLRQEYHHCRGTYEYEKKF 197 (504)
Q Consensus 176 EIeaLrqELq~LR~eLe~~kk~ 197 (504)
++..|++|...+...++.+++.
T Consensus 18 qV~eL~qe~k~m~k~lEeEqkA 39 (56)
T 2w6b_A 18 EVQELRQDNKKMKKSLEEEQRA 39 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444333333
No 355
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=81.40 E-value=5.9 Score=39.63 Aligned_cols=16 Identities=19% Similarity=0.407 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 010679 209 EKNYITMATEVEKLRA 224 (504)
Q Consensus 209 ek~L~sme~EiekLra 224 (504)
++.+.++.-++-+|+.
T Consensus 131 er~ln~~~pdw~~l~k 146 (302)
T 2y3a_B 131 DKRMNSLKPDLMQLRK 146 (302)
T ss_dssp HHHHHHHTHHHHHHHH
T ss_pred HhhhccCChHHHHHhh
Confidence 3333333334433333
No 356
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=81.25 E-value=22 Score=30.78 Aligned_cols=22 Identities=18% Similarity=0.155 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010679 67 TENQRLAATHGTLRQELAAAQH 88 (504)
Q Consensus 67 ~e~qrLe~qi~~LkqELa~lqq 88 (504)
....+|+..+.....+|+-++.
T Consensus 5 ~avdkLe~mFqKA~sDLdyiq~ 26 (123)
T 4aj5_K 5 AEVDKLELMFQKAESDLDYIQY 26 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHH
Confidence 3344444444444444444433
No 357
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=81.11 E-value=17 Score=34.55 Aligned_cols=14 Identities=14% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH
Q 010679 49 EVMEQKIASQHVEM 62 (504)
Q Consensus 49 ~~LEqeLe~~~eEI 62 (504)
-.|-.+|=+.+.|-
T Consensus 44 yliSKEiyVvneEt 57 (214)
T 2cly_A 44 YLLSKEIYVITPET 57 (214)
T ss_dssp --------------
T ss_pred HHHcCceEEEechH
Confidence 44555666665554
No 358
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=81.07 E-value=11 Score=28.57 Aligned_cols=39 Identities=10% Similarity=0.116 Sum_probs=16.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 184 YHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKL 222 (504)
Q Consensus 184 Lq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekL 222 (504)
|...++.++.+.+-+..+.++++-|.+.+.++..|-..|
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhh
Confidence 333333344444444444444444444444444443333
No 359
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=81.04 E-value=2.7 Score=31.29 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH
Q 010679 176 ELESLRQEYHHCRGTYEYEKKFYNDH 201 (504)
Q Consensus 176 EIeaLrqELq~LR~eLe~~kk~~~el 201 (504)
++++|+.|+++|+.+++.++++++++
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554444443333333
No 360
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=80.99 E-value=9.1 Score=30.07 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 010679 70 QRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKME 119 (504)
Q Consensus 70 qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLE 119 (504)
..+...+..|+++|....+||.+|+..+.- +.+....|.++|-.+.
T Consensus 14 ~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~l----k~kd~ErLNDEiislN 59 (75)
T 3a7o_A 14 DALLNTLAILQKELKSKEQEIRRLKEVIAL----KNKNTERLNDELISGT 59 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcccHHHhhHHHHHhH
Confidence 344446667777777777777777666543 2333444555544443
No 361
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=80.78 E-value=3.4 Score=32.57 Aligned_cols=46 Identities=20% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILH 94 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~ 94 (504)
+.-++.|..+..+|..|+..+..|..+...|+.++..+..|+..++
T Consensus 25 eRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 25 KRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 362
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=80.64 E-value=17 Score=29.24 Aligned_cols=47 Identities=23% Similarity=0.256 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 010679 146 REELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKF 197 (504)
Q Consensus 146 rqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~ 197 (504)
+++.+.-++.|++||+....+. --.+|..-.+.|.+++++|..+...
T Consensus 31 I~DKQ~~i~~Lt~eLq~A~~ea-----NpaeIA~~~~~L~qAraDL~~l~r~ 77 (90)
T 4b6x_A 31 IEDKQLMVNNLTDELQDAIDEA-----NPAEIANTSQQLRHARADLADLQRR 77 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcc-----CHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3333344445555555443332 1234444445555555554444333
No 363
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=80.58 E-value=41 Score=32.17 Aligned_cols=22 Identities=9% Similarity=0.147 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhH
Q 010679 170 IPALLSELESLRQEYHHCRGTY 191 (504)
Q Consensus 170 l~~L~~EIeaLrqELq~LR~eL 191 (504)
|.....+++..+.+.+.+-.+|
T Consensus 167 l~kae~el~~Ak~~Ye~lN~~L 188 (243)
T 4a3a_A 167 ISKAEEEFQKAQKVFEEFNVDL 188 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555544443
No 364
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=80.52 E-value=6.1 Score=29.01 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHH
Q 010679 173 LLSELESLRQEYHHCRGTYEYE 194 (504)
Q Consensus 173 L~~EIeaLrqELq~LR~eLe~~ 194 (504)
|..+++.|+.|-..||+||+.-
T Consensus 8 L~~QVe~Lk~ENshLrrEL~dN 29 (54)
T 1deb_A 8 LLKQVEALKMENSNLRQELEDN 29 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHhh
Confidence 3444555555555555554433
No 365
>1kmi_Z CHEZ, chemotaxis protein CHEZ; four-helix bundle, signaling protein; HET: BCN; 2.90A {Escherichia coli} SCOP: h.4.11.1
Probab=80.30 E-value=33 Score=32.45 Aligned_cols=15 Identities=13% Similarity=0.085 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 010679 49 EVMEQKIASQHVEMQ 63 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq 63 (504)
..+=++|-.+...|.
T Consensus 15 ~~~~~~iG~ltR~Lh 29 (214)
T 1kmi_Z 15 GDIIARIGSLTRMLR 29 (214)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 334445544444443
No 366
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=80.25 E-value=11 Score=41.89 Aligned_cols=25 Identities=8% Similarity=0.213 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 64 KLATENQRLAATHGTLRQELAAAQH 88 (504)
Q Consensus 64 ~Le~e~qrLe~qi~~LkqELa~lqq 88 (504)
++...++.+++++.+|-.+|+.+++
T Consensus 14 ~i~~~i~~~~~~r~~l~~~~~~~~~ 38 (706)
T 3fhn_A 14 NINDRIKQVQNERNELASKLQNLKQ 38 (706)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444445555555555555544444
No 367
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=80.11 E-value=36 Score=31.14 Aligned_cols=31 Identities=6% Similarity=0.010 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 010679 50 VMEQKIASQHVEMQKLATE--NQRLAATHGTLR 80 (504)
Q Consensus 50 ~LEqeLe~~~eEIq~Le~e--~qrLe~qi~~Lk 80 (504)
.-+.+|+.+...+-.|..+ ..+|...+..++
T Consensus 49 na~grLTLLLGnL~~IlG~~SlTqL~nrL~~wl 81 (201)
T 3u0c_A 49 NASSQLTLLIGNLIQILGEKSLTALTNKITAWK 81 (201)
T ss_dssp CHHHHHHHHHHHHHHHHCSGGGHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 3467788888777666654 345555555554
No 368
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=79.86 E-value=24 Score=29.07 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHH
Q 010679 199 NDHLESLQVMEKNYIT-MATEVEKLR 223 (504)
Q Consensus 199 ~el~eqlqemek~L~s-me~EiekLr 223 (504)
..+..+++.....|.. +.+++.+|.
T Consensus 68 ~~~~~klr~Yk~dl~~~lk~~lk~l~ 93 (97)
T 3onj_A 68 ATYKAKLREWKKTIQSDIKRPLQSLV 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555666666666 666666554
No 369
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=79.81 E-value=10 Score=30.14 Aligned_cols=14 Identities=21% Similarity=0.304 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 010679 214 TMATEVEKLRAELM 227 (504)
Q Consensus 214 sme~EiekLraELe 227 (504)
.++.||..-++-|+
T Consensus 44 ~Le~EIatYRkLLE 57 (74)
T 2xv5_A 44 ALDMEIHAYRKLLE 57 (74)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 34455555554443
No 370
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=79.75 E-value=37 Score=31.06 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 137 TEAQNLVVAREELIAKVHQLTQDLQR 162 (504)
Q Consensus 137 ~ELqeL~aerqeL~aqvq~L~~ELq~ 162 (504)
..+.......+.++.++..++.+|..
T Consensus 117 nny~~Ads~~~~lekKvn~aq~kLs~ 142 (201)
T 3u0c_A 117 NKLKNADSKIKDLENKINQIQTRLSE 142 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344444444555555555544443
No 371
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=79.62 E-value=19 Score=30.90 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010679 61 EMQKLATENQRLAATHGTLRQ 81 (504)
Q Consensus 61 EIq~Le~e~qrLe~qi~~Lkq 81 (504)
|+++|..+...+...+++.+.
T Consensus 40 ELeRLr~~~d~~~K~HE~kkl 60 (115)
T 3vem_A 40 ELEKLRRESENSKKTFEEKKS 60 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 372
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=79.61 E-value=8.4 Score=29.09 Aligned_cols=57 Identities=32% Similarity=0.455 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHH--------HhHHHHHHHHHHHHHH
Q 010679 76 HGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKT--------AEPVKLEFQKSKTEAQ 140 (504)
Q Consensus 76 i~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~e--------le~LkaELeqLr~ELq 140 (504)
..+.++.|+.++.+|+.|-.. +.++.....+|..++.||.. ++.++.|...++.+|+
T Consensus 4 waefkqrlaaiktrlqalggs--------eaelaafekeiaafeselqaykgkgnpevealrkeaaairdelq 68 (73)
T 2a3d_A 4 WAEFKQRLAAIKTRLQALGGS--------EAELAAFEKEIAAFESELQAYKGKGNPEVEALRKEAAAIRDELQ 68 (73)
T ss_dssp HHHHHHHHHHHHHHHHHCSSG--------GGTHHHHHHHHHHHHHHHHHSSSCCSSTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCc--------HHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHH
Confidence 345566666666666554332 23344555566677777653 4455555555555544
No 373
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=79.46 E-value=42 Score=31.63 Aligned_cols=27 Identities=4% Similarity=0.176 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 140 QNLVVAREELIAKVHQLTQDLQRAHTD 166 (504)
Q Consensus 140 qeL~aerqeL~aqvq~L~~ELq~l~~e 166 (504)
.++..++.+++..+..|..+|.+.+.+
T Consensus 147 l~~lvelA~le~~~~~L~~eIkkT~RR 173 (217)
T 3aon_A 147 LPKLLKLAEVEKTCQLMAEEIEKTRRR 173 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 334445556666666666666554443
No 374
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=79.34 E-value=15 Score=29.80 Aligned_cols=69 Identities=17% Similarity=0.282 Sum_probs=0.0
Q ss_pred CCCC----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 010679 42 FDMM----PPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAK 117 (504)
Q Consensus 42 ~~~~----p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~k 117 (504)
||++ |...-++.--+..+..+.....+|.+|...+..++.++..++.++..|+. +-.+.+-|..-|.+
T Consensus 9 ~dL~~~e~pse~YWk~lAE~Rr~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~e--------lA~~~q~la~~i~~ 80 (83)
T 1wlq_A 9 FDLISKENPSSQYWKEVAEQRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAE--------VAEHVQYMAEVIER 80 (83)
T ss_dssp -----CCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH--------HHHHHHHHHHHHHH
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Q ss_pred H
Q 010679 118 M 118 (504)
Q Consensus 118 L 118 (504)
|
T Consensus 81 L 81 (83)
T 1wlq_A 81 L 81 (83)
T ss_dssp T
T ss_pred h
No 375
>1t98_A KICB protein, chromosome partition protein MUKF; winged helix, helix-turn helix, domain swapped, condensin; 2.90A {Escherichia coli} SCOP: a.4.5.65 a.47.6.1
Probab=79.23 E-value=37 Score=32.87 Aligned_cols=6 Identities=0% Similarity=0.529 Sum_probs=2.3
Q ss_pred HHHHHH
Q 010679 117 KMEAEL 122 (504)
Q Consensus 117 kLEaEL 122 (504)
.+++++
T Consensus 184 ~Vk~~I 189 (287)
T 1t98_A 184 QVKDDI 189 (287)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 376
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=79.22 E-value=5.7 Score=32.95 Aligned_cols=14 Identities=29% Similarity=0.515 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 010679 175 SELESLRQEYHHCR 188 (504)
Q Consensus 175 ~EIeaLrqELq~LR 188 (504)
..++.|..||+.+.
T Consensus 56 Rk~DKl~~ele~l~ 69 (93)
T 3sjb_C 56 RKLDSLDKEINNLK 69 (93)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 377
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=79.21 E-value=9.7 Score=36.77 Aligned_cols=73 Identities=11% Similarity=0.215 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchH---HHHHHHHHHHHHHHHHHH
Q 010679 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS---ERELQMRNLTEKIAKMEA 120 (504)
Q Consensus 48 ~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~a---e~E~eL~eL~eki~kLEa 120 (504)
+..|....+.+..++..|.-+..-+..+|.++..+|+.++..-..+..+|+.++. .++.+|..+.++++.+++
T Consensus 151 l~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~qE 226 (242)
T 3uux_B 151 PSALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLEE 226 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
No 378
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=79.13 E-value=20 Score=31.70 Aligned_cols=14 Identities=7% Similarity=0.216 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 010679 151 AKVHQLTQDLQRAH 164 (504)
Q Consensus 151 aqvq~L~~ELq~l~ 164 (504)
.+++...+..++++
T Consensus 59 kql~~Ake~~eKlk 72 (136)
T 3ter_A 59 KEMKEAIEMVDRLQ 72 (136)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 379
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=79.06 E-value=46 Score=31.82 Aligned_cols=23 Identities=13% Similarity=0.166 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 010679 206 QVMEKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 206 qemek~L~sme~EiekLraELek 228 (504)
..+.+....+......|+.++..
T Consensus 200 ~~i~~r~~~l~~~w~~L~~~~~~ 222 (235)
T 2odv_A 200 EQMYRRVYRLHKRLVAIRTEYNL 222 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555566666665544
No 380
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=79.04 E-value=4.6 Score=30.06 Aligned_cols=15 Identities=33% Similarity=0.516 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHh
Q 010679 214 TMATEVEKLRAELMN 228 (504)
Q Consensus 214 sme~EiekLraELek 228 (504)
..+.|+.+|+.++.+
T Consensus 52 kveeevkkleeeikk 66 (67)
T 1lq7_A 52 KVEEEVKKLEEEIKK 66 (67)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 344555555555544
No 381
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=78.97 E-value=3.7 Score=30.55 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010679 134 KSKTEAQNLVVAREELIAKVHQL 156 (504)
Q Consensus 134 qLr~ELqeL~aerqeL~aqvq~L 156 (504)
.|+.|+.+|+.++..|..++++|
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 382
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=78.94 E-value=35 Score=30.39 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=15.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHH
Q 010679 46 PPPEVMEQKIASQHVEMQKLAT 67 (504)
Q Consensus 46 p~~~~LEqeLe~~~eEIq~Le~ 67 (504)
+..+.|+.+|+++.++-..++.
T Consensus 43 ~SleEIqkKLeAAEERRks~Ea 64 (143)
T 3ryc_E 43 PSLEEIQKKLEAAEERRKYQEA 64 (143)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhHHH
Confidence 5668889999888775554443
No 383
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=78.69 E-value=6.2 Score=36.01 Aligned_cols=53 Identities=9% Similarity=0.018 Sum_probs=23.0
Q ss_pred CChHHHHHHHHHHHHHHHHH-HHHHH-----HHHHHHHH-HHHHHHHHHHHHHHHHhhhc
Q 010679 46 PPPEVMEQKIASQHVEMQKL-ATENQ-----RLAATHGT-LRQELAAAQHELQILHGQIG 98 (504)
Q Consensus 46 p~~~~LEqeLe~~~eEIq~L-e~e~q-----rLe~qi~~-LkqELa~lqqEL~~L~~~L~ 98 (504)
++.+.+...+-..-..+... ...+. .|..++.. |...+..+...+..++..|.
T Consensus 24 ~~le~v~~~~w~Y~~q~~~~a~~~v~ql~~sel~qel~~~l~~~ld~l~~~~~~l~~~L~ 83 (165)
T 1gs9_A 24 QRWELALGRFWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLT 83 (165)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred ChHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34455555555555555432 11122 22233322 44444445555555555544
No 384
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=78.30 E-value=8.4 Score=39.39 Aligned_cols=88 Identities=9% Similarity=0.041 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHHHHHH
Q 010679 135 SKTEAQNLVVAREELIAKVHQL-----TQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYE--KKFYNDHLESLQV 207 (504)
Q Consensus 135 Lr~ELqeL~aerqeL~aqvq~L-----~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~--kk~~~el~eqlqe 207 (504)
+...+..+..+..+|+.++..- ..+.+++..+...|..+...+..++..++++....+-+ ....+.+.+++++
T Consensus 1 ~~~~l~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~~D~e~~~~a~~e~~~ 80 (354)
T 3d5a_X 1 MLDKLDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLLDDPELKEMAKAEREA 80 (354)
T ss_dssp CHHHHHHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHhcCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 010679 208 MEKNYITMATEVEKL 222 (504)
Q Consensus 208 mek~L~sme~EiekL 222 (504)
+++++..++.+|..|
T Consensus 81 l~~~~~~le~~l~~l 95 (354)
T 3d5a_X 81 LLARKEALEKELERH 95 (354)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
No 385
>3kdq_A Uncharacterized conserved protein; functionally unknown protein,corynebacterium diphtheriae, structural genomics, PSI-2; 3.00A {Corynebacterium diphtheriae}
Probab=78.25 E-value=38 Score=30.45 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010679 142 LVVAREELIAKVHQLTQDL 160 (504)
Q Consensus 142 L~aerqeL~aqvq~L~~EL 160 (504)
+.+.+..|..++..+..-+
T Consensus 82 aia~rd~L~~~~~~l~~~~ 100 (154)
T 3kdq_A 82 ALSVRDALLKKRTLYSDLA 100 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333
No 386
>1kmi_Z CHEZ, chemotaxis protein CHEZ; four-helix bundle, signaling protein; HET: BCN; 2.90A {Escherichia coli} SCOP: h.4.11.1
Probab=78.24 E-value=28 Score=32.97 Aligned_cols=8 Identities=25% Similarity=0.546 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 010679 205 LQVMEKNY 212 (504)
Q Consensus 205 lqemek~L 212 (504)
++++|++|
T Consensus 156 v~~vE~~L 163 (214)
T 1kmi_Z 156 IQEIERQL 163 (214)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 33334333
No 387
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=78.22 E-value=4.7 Score=40.76 Aligned_cols=6 Identities=50% Similarity=1.619 Sum_probs=2.7
Q ss_pred CCCCCC
Q 010679 262 YEDGYG 267 (504)
Q Consensus 262 y~~~y~ 267 (504)
|-+|||
T Consensus 133 Yk~GFG 138 (323)
T 1lwu_C 133 YREGFG 138 (323)
T ss_dssp HHHCEE
T ss_pred HhhhhC
Confidence 344444
No 388
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=77.74 E-value=1.1e+02 Score=35.45 Aligned_cols=8 Identities=38% Similarity=0.522 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 010679 177 LESLRQEY 184 (504)
Q Consensus 177 IeaLrqEL 184 (504)
.++++.+|
T Consensus 928 hea~e~dl 935 (1010)
T 1g8x_A 928 LEAFDGEC 935 (1010)
T ss_dssp HHHHTTTT
T ss_pred HHHHHHHH
Confidence 33333333
No 389
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=77.61 E-value=11 Score=30.23 Aligned_cols=34 Identities=18% Similarity=0.112 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679 198 YNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 231 (504)
Q Consensus 198 ~~el~eqlqemek~L~sme~EiekLraELekle~ 231 (504)
..+.-+.+..++.++......+++...+|.++.+
T Consensus 44 V~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~ 77 (83)
T 1sfc_B 44 VESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555566666666666666666666543
No 390
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=77.41 E-value=46 Score=30.95 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010679 55 IASQHVEMQKLATENQRLAATH 76 (504)
Q Consensus 55 Le~~~eEIq~Le~e~qrLe~qi 76 (504)
|..+..+|..|..+.+.|..++
T Consensus 21 i~~L~~kL~~L~~eqe~l~ee~ 42 (190)
T 3thf_A 21 IKHLNQKIVSLKREQQTISEEC 42 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 391
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=77.32 E-value=33 Score=29.16 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 132 FQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT 165 (504)
Q Consensus 132 LeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~ 165 (504)
|+.+|.+|..+-.++-+|.+++-.+..++.+++.
T Consensus 14 L~~lR~~ID~ID~~il~LL~~R~~~~~~I~~~K~ 47 (114)
T 3rmi_A 14 LAYLRQSIDNFDITLIHILAERFRCTQAIGRLKA 47 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443
No 392
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=77.10 E-value=70 Score=33.31 Aligned_cols=76 Identities=12% Similarity=0.101 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Q 010679 146 REELIAKVHQLTQDLQRAHTDVQQIP-ALLSELESLRQEYHHCRGTYEYEKKFYNDHL-----ESLQVMEKNYITMATEV 219 (504)
Q Consensus 146 rqeL~aqvq~L~~ELq~l~~elqql~-~L~~EIeaLrqELq~LR~eLe~~kk~~~el~-----eqlqemek~L~sme~Ei 219 (504)
|+.+..+-+.|...++.+...++++. .+..+|+..-.++..+-++|..+++++...+ ..-.++..+.+.+-.||
T Consensus 66 R~~vl~~a~~La~~~n~~~~~L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI~~~~~~~~g~~~ndLlDqRD~ll~eL 145 (463)
T 2d4y_A 66 RQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQISRMTGVGAGASPNDLLDQRDQLVSEL 145 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHhHHHHHHHHHHH
Confidence 44444444444444444444333322 2334455555555555555555555554432 12234555555555555
Q ss_pred HH
Q 010679 220 EK 221 (504)
Q Consensus 220 ek 221 (504)
.+
T Consensus 146 S~ 147 (463)
T 2d4y_A 146 NK 147 (463)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 393
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=76.81 E-value=22 Score=33.40 Aligned_cols=8 Identities=50% Similarity=0.505 Sum_probs=3.2
Q ss_pred hHHHHHHH
Q 010679 126 EPVKLEFQ 133 (504)
Q Consensus 126 e~LkaELe 133 (504)
+.++..+.
T Consensus 90 ee~r~~l~ 97 (216)
T 2lem_A 90 EEVKQKVQ 97 (216)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhhh
Confidence 34444433
No 394
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=76.72 E-value=5.6 Score=40.93 Aligned_cols=15 Identities=7% Similarity=0.330 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHHHH
Q 010679 108 MRNLTEKIAKMEAEL 122 (504)
Q Consensus 108 L~eL~eki~kLEaEL 122 (504)
+..+.+++.+|++++
T Consensus 19 l~~~~~r~~el~~~l 33 (371)
T 1zbt_A 19 LQAVEDRYEELGELL 33 (371)
T ss_dssp HHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHh
Confidence 334444444444433
No 395
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=76.71 E-value=54 Score=31.34 Aligned_cols=19 Identities=21% Similarity=0.207 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHhccc
Q 010679 213 ITMATEVEKLRAELMNAPN 231 (504)
Q Consensus 213 ~sme~EiekLraELekle~ 231 (504)
..+.+.+.+|..+...|..
T Consensus 200 ~~i~~r~~~l~~~w~~L~~ 218 (235)
T 2odv_A 200 EQMYRRVYRLHKRLVAIRT 218 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555443
No 396
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=76.68 E-value=6.8 Score=32.11 Aligned_cols=49 Identities=18% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI 97 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L 97 (504)
+.-.++......++..|+.+|..|..++..|+.++..+..-|..+-..+
T Consensus 32 ~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~~ 80 (87)
T 1hjb_A 32 DKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEPL 80 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHH
No 397
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=76.59 E-value=8.8 Score=39.48 Aligned_cols=21 Identities=10% Similarity=0.052 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 010679 208 MEKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 208 mek~L~sme~EiekLraELek 228 (504)
+++++..++.++++++.+|..
T Consensus 92 a~~e~~~l~~~l~~le~~l~~ 112 (371)
T 1zbt_A 92 AKEELKNSKVAKEEYEEKLRF 112 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555444
No 398
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=76.53 E-value=23 Score=32.63 Aligned_cols=17 Identities=18% Similarity=0.438 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010679 208 MEKNYITMATEVEKLRA 224 (504)
Q Consensus 208 mek~L~sme~EiekLra 224 (504)
++++++.++.+++.++.
T Consensus 68 Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 68 IEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp HHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333344444444444
No 399
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=76.52 E-value=26 Score=27.61 Aligned_cols=20 Identities=0% Similarity=0.032 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 010679 209 EKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 209 ek~L~sme~EiekLraELek 228 (504)
...|..+...|.+....++.
T Consensus 66 ~~~L~~i~~~L~~~a~~y~~ 85 (97)
T 2vs0_A 66 AQLLEEIKQQLNSTADAVQE 85 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 400
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=76.52 E-value=17 Score=40.78 Aligned_cols=42 Identities=12% Similarity=-0.072 Sum_probs=21.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 187 CRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 187 LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELek 228 (504)
++.|++.+++++.++++-+.........+..|+..++++...
T Consensus 701 l~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~~~~~yg~ 742 (767)
T 2xkj_E 701 IRHEQDELSAKAAIIREQLENPESLKNLIISELKEDAKKFGD 742 (767)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC
Confidence 333333333344444444444444455566677777766654
No 401
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=76.50 E-value=3 Score=40.69 Aligned_cols=32 Identities=13% Similarity=0.016 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010679 199 NDHLESLQVMEKNYITMATEVEKLRAELMNAP 230 (504)
Q Consensus 199 ~el~eqlqemek~L~sme~EiekLraELekle 230 (504)
++++.++.+.+.++....+.+.+|..+|.+++
T Consensus 172 e~Lk~e~~e~~te~~p~~k~~~qly~~vt~i~ 203 (250)
T 2ve7_C 172 ERLEKEVDEDTTVTIPSAVYVAQLYHQVSKIE 203 (250)
T ss_dssp C-------------CTTTHHHHHHHHHHHCCE
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHhhce
Confidence 33333444444444444566777777887753
No 402
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=76.46 E-value=1.3 Score=27.84 Aligned_cols=28 Identities=29% Similarity=0.445 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 61 EMQKLATENQRLAATHGTLRQELAAAQH 88 (504)
Q Consensus 61 EIq~Le~e~qrLe~qi~~LkqELa~lqq 88 (504)
||..|+-++..|+..+..|+++++.+++
T Consensus 1 eidalefendaleqkiaalkqkiaslkq 28 (28)
T 3ra3_A 1 EIDALEFENDALEQKIAALKQKIASLKQ 28 (28)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcchHHhccHHHHHHHHHHHHHHHHhcC
No 403
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=76.35 E-value=5.5 Score=25.84 Aligned_cols=30 Identities=27% Similarity=0.279 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 010679 169 QIPALLSELESLRQEYHHCRGTYEYEKKFY 198 (504)
Q Consensus 169 ql~~L~~EIeaLrqELq~LR~eLe~~kk~~ 198 (504)
++..+++||.+|+.|+..++=++..++..+
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkqgy 32 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQGY 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccc
No 404
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=76.31 E-value=1.5 Score=50.81 Aligned_cols=152 Identities=13% Similarity=0.153 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHH--HHHHHHHHHHHHH
Q 010679 46 PPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRN--LTEKIAKMEAELK 123 (504)
Q Consensus 46 p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~e--L~eki~kLEaEL~ 123 (504)
|+....-..|+..=..+...+.+.+.+....-...+.|+.+.++..+-....+....+++..+.. .-+.+..+++.++
T Consensus 839 p~~gl~~~~L~~~W~~L~~ae~er~~~L~~el~RlerL~~la~kf~~ka~~~e~Wl~eke~~l~s~d~g~dl~~vqallk 918 (995)
T 2ycu_A 839 APAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLK 918 (995)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGGCCCCCCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred cchhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHH
Q ss_pred HHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 010679 124 TAEPVKLEFQKSKTEAQ-NLVVAREELIAKVHQLTQDLQRAHTDV--QQIPALLSELESLRQEYHHCRGTYEYEKKF 197 (504)
Q Consensus 124 ele~LkaELeqLr~ELq-eL~aerqeL~aqvq~L~~ELq~l~~el--qql~~L~~EIeaLrqELq~LR~eLe~~kk~ 197 (504)
+.+.+.++|...+..+. ++....++|...----..+|.+...++ ++-..|+.-.+.-++.|++..+..+++.+.
T Consensus 919 Khea~e~dl~a~e~ri~~~l~~~a~~L~~~~y~~~~~I~~R~~~l~~~~W~~L~~~a~~Rr~~L~~~~~~~q~~~~l 995 (995)
T 2ycu_A 919 NLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDL 995 (995)
T ss_dssp HHHHHHHHHHHTTTCSCSSHHHHHHHHTTTHHHHHHHHHHHHTHHHHHHHHHHHSSSCCCC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 405
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=76.30 E-value=15 Score=26.92 Aligned_cols=50 Identities=16% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010679 118 MEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDV 167 (504)
Q Consensus 118 LEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~el 167 (504)
.++-++.++.|+.|-..|+.||++-...+..|+.+-..+++-+..++..+
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~~i 54 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQGSI 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHcccC
No 406
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=76.29 E-value=5.3 Score=40.38 Aligned_cols=58 Identities=7% Similarity=0.003 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010679 172 ALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 229 (504)
Q Consensus 172 ~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekl 229 (504)
...+....|..|+.+++..|......+..|++.+..++++|+.++..|.+|+..+...
T Consensus 2 ~~~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~~~ 59 (323)
T 1lwu_C 2 SGQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRP 59 (323)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred cHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 407
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=76.02 E-value=40 Score=29.55 Aligned_cols=110 Identities=17% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhhccchHHHHHHHHHH-----HHHHHHHHH
Q 010679 51 MEQKIASQHVEMQKLATENQRLAATHGTLRQ-----ELAAAQHELQILHGQIGGMKSERELQMRNL-----TEKIAKMEA 120 (504)
Q Consensus 51 LEqeLe~~~eEIq~Le~e~qrLe~qi~~Lkq-----ELa~lqqEL~~L~~~L~~l~ae~E~eL~eL-----~eki~kLEa 120 (504)
+++=+..+..++..++.-..-|+++...|.. .|..+.+++..+-..|..+.......+..+ ..-+..+-+
T Consensus 6 ~~~L~~~L~~~~~~l~~L~~lL~~E~~~L~~~~d~~~L~~i~~~K~~ll~~L~~~~~~R~~~l~~lgl~~~~~g~~~~~~ 85 (154)
T 3opc_A 6 SAALKSCLERENALVVEFLHALEAETEALMDRRAHESLQAAVQRKETLADDLAQLGAERDALLSGAGLASGPAGTDAAAA 85 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 121 ELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDL 160 (504)
Q Consensus 121 EL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~EL 160 (504)
...++..+..+|..+-.+++++...-..|..........+
T Consensus 86 ~~~~l~~~w~~l~~l~~~c~~~N~~Ng~Li~~~l~~~~~~ 125 (154)
T 3opc_A 86 AHPELGPLWQALQANAAQAREHNQRNGTLIAVNLRHTQES 125 (154)
T ss_dssp HCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 408
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=75.94 E-value=22 Score=38.13 Aligned_cols=111 Identities=10% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHH-------
Q 010679 51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK------- 123 (504)
Q Consensus 51 LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~------- 123 (504)
++-+++....+.+.+..+.+.-..-++.+..-+..+.+.++.++..-.. +.....|.+...-.+.+..
T Consensus 374 ~~~R~~v~~rR~~~~L~k~~~r~hilegl~~a~~~id~vI~iIr~s~~~-----~~a~~~L~~~f~lse~qa~~IL~m~L 448 (514)
T 2inr_A 374 LNHQIEVVANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNK-----RDAKENLIEVYEFTEEQAEAIVMLQL 448 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCCSH-----HHHHHHHHTTSSCCHHHHHHHHTCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH-----HHHHHHHHHhcCCCHHHHHHHHhchH
Q ss_pred ------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 124 ------TAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTD 166 (504)
Q Consensus 124 ------ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~e 166 (504)
+.++++.|+++++.++.+++..+..-....+-+.++|..++++
T Consensus 449 ~rLT~~e~~kl~~E~~~l~~ei~~l~~iL~~~~~~~~~i~~el~~i~~~ 497 (514)
T 2inr_A 449 YRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKK 497 (514)
T ss_dssp GGGSTTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
No 409
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=75.85 E-value=14 Score=31.95 Aligned_cols=60 Identities=22% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 103 ERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT 165 (504)
Q Consensus 103 e~E~eL~eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~ 165 (504)
+.+.+.+.|.++..+.|.| ++.|+.++.+++..++.....+.++..+.+.|..+..+...
T Consensus 1 ~~~~e~~~~~~~~~~~e~e---~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~~~~~~~~ 60 (125)
T 1joc_A 1 NNQDERRALLERCLKGEGE---IEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKHTQALN 60 (125)
T ss_dssp --CHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCC
No 410
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=75.74 E-value=52 Score=31.19 Aligned_cols=89 Identities=10% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHHHh------hHHHHH
Q 010679 124 TAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQ--IPALLSELESLRQEYHHCRG------TYEYEK 195 (504)
Q Consensus 124 ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqq--l~~L~~EIeaLrqELq~LR~------eLe~~k 195 (504)
+++.+..+|..++.++.++..+...+.++.+.+.....+-..+..+ +..+..+|-.+-..|+++.. .+..+.
T Consensus 60 e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerAl~~~~~~~~~~~l~ 139 (213)
T 4ani_A 60 ELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFERALKIETDNEQAKSIL 139 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCCSCCSTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccccccHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010679 196 KFYNDHLESLQVMEKNY 212 (504)
Q Consensus 196 k~~~el~eqlqemek~L 212 (504)
+-+.-+.+++..+-++.
T Consensus 140 eGvemi~k~l~~~L~k~ 156 (213)
T 4ani_A 140 QGMEMVYRSLVDALKKE 156 (213)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHC
No 411
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=75.65 E-value=40 Score=30.46 Aligned_cols=98 Identities=6% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------------cchHHHHHHHHHHHHHHHHHH
Q 010679 53 QKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG-------------GMKSERELQMRNLTEKIAKME 119 (504)
Q Consensus 53 qeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~-------------~l~ae~E~eL~eL~eki~kLE 119 (504)
+.|..++.=|+.+..+-++-.+++..+..+|+.++..+.-|..-|. ++..++-..++.++.+|.++-
T Consensus 32 eDL~~AN~LiK~m~~~d~~r~e~~~k~~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li 111 (158)
T 1naf_A 32 EDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLA 111 (158)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHHHHHHHHHTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 120 AELKTAEPVKLEFQKSKTEAQNLVVAREELI 150 (504)
Q Consensus 120 aEL~ele~LkaELeqLr~ELqeL~aerqeL~ 150 (504)
.+...-+.+..++-++..+|..+...-+.+.
T Consensus 112 ~e~~ddee~L~elL~~ND~Ln~vl~kY~~~~ 142 (158)
T 1naf_A 112 SDTEDNDEALAEILQANDNLTQVINLYKQLV 142 (158)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCCHHHHHHHHHhhHHHHHHHHHHHHHh
No 412
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=75.61 E-value=8.7 Score=28.71 Aligned_cols=43 Identities=16% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 186 HCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 186 ~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELek 228 (504)
+.+..+..++..+..+..+++.++.+-..+++||++|.+-|..
T Consensus 8 Rse~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 8 RSERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 413
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=75.52 E-value=25 Score=26.92 Aligned_cols=65 Identities=15% Similarity=0.123 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679 167 VQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 231 (504)
Q Consensus 167 lqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~ 231 (504)
+..+.+-..+|..+.+.+.+|..-+..+-....+.-+.+..++.++......+++...+|.++.+
T Consensus 4 l~~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~k 68 (68)
T 1n7s_B 4 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 414
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=75.49 E-value=19 Score=28.19 Aligned_cols=66 Identities=17% Similarity=0.144 Sum_probs=0.0
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHH
Q 010679 41 PFDMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSEREL 106 (504)
Q Consensus 41 ~~~~~p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~ 106 (504)
|.+..+......+.-.++..=-++.+..+..|+.++..|+.....+..+...|...|..+..+++.
T Consensus 3 p~~~~~~~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 3 NSDQEPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp --CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred CCccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 415
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=75.42 E-value=28 Score=31.27 Aligned_cols=74 Identities=20% Similarity=0.244 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 010679 47 PPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAA---------AQHELQILHGQIGGMKSERELQMRNLTEKIAK 117 (504)
Q Consensus 47 ~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~---------lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~k 117 (504)
++.-.++-+..+.+.|..++.+++.|+.+...+-.++.. ..+.+..++..+...+.++..+++.|..++..
T Consensus 23 Te~~Ke~l~~~l~~~i~q~d~elqQLefq~kr~~~e~~~q~~~~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~q 102 (150)
T 4dci_A 23 TPTWKEEAEREISNGIANADQQLAQLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQ 102 (150)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 010679 118 MEA 120 (504)
Q Consensus 118 LEa 120 (504)
++.
T Consensus 103 v~~ 105 (150)
T 4dci_A 103 VRE 105 (150)
T ss_dssp HHH
T ss_pred Hhc
No 416
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=75.29 E-value=9 Score=33.66 Aligned_cols=92 Identities=8% Similarity=0.131 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCC--------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHH
Q 010679 32 RPPMPGAFPPFDMM--------PPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSE 103 (504)
Q Consensus 32 ~~~~~~~~~~~~~~--------p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae 103 (504)
+| +-+|.|.+.. +.++.+...+..+...|-....++..|...+=.+..--+.-.++|.+|++++.....+
T Consensus 30 a~--p~~~~~~~~~~~~~~~~~~~~~~f~~~~~ela~dli~k~kqIe~LIdsLP~~~~see~Q~~ri~~L~~E~~~~~~e 107 (132)
T 1ykh_B 30 HG--FERLTVNEPQMSDKHATVVPPEEFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDE 107 (132)
T ss_dssp SC--CC---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC--cccCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010679 104 RELQMRNLTEKIAKMEAELKTA 125 (504)
Q Consensus 104 ~E~eL~eL~eki~kLEaEL~el 125 (504)
++..+++....+.+++.-+..+
T Consensus 108 l~~~v~e~e~ll~~v~~~l~~i 129 (132)
T 1ykh_B 108 KIEAIKKKEKLMRHVDSMIEDF 129 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 417
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=75.27 E-value=25 Score=26.78 Aligned_cols=62 Identities=13% Similarity=0.179 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679 170 IPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 231 (504)
Q Consensus 170 l~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~ 231 (504)
+.+-..+|..+.+.+.+|..-+..+-....+.-+.+..++.++......+++...+|.++.+
T Consensus 4 i~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~k 65 (65)
T 1gl2_B 4 MHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAAN 65 (65)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 418
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=75.27 E-value=13 Score=38.08 Aligned_cols=88 Identities=17% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 010679 106 LQMRNLTEKIAKMEAELKTAE-----PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESL 180 (504)
Q Consensus 106 ~eL~eL~eki~kLEaEL~ele-----~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaL 180 (504)
..+..+.+++..|+.++..-. ..-.++.+-..+|+.+.....++...++.|..-+.-+. +.+-...+..|++.+
T Consensus 3 ~~l~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~~-D~e~~~~a~~e~~~l 81 (354)
T 3d5a_X 3 DKLDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLLD-DPELKEMAKAEREAL 81 (354)
T ss_dssp HHHHHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT-CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhHHHH
Q 010679 181 RQEYHHCRGTYEYE 194 (504)
Q Consensus 181 rqELq~LR~eLe~~ 194 (504)
+.+++.++.+|+.+
T Consensus 82 ~~~~~~le~~l~~l 95 (354)
T 3d5a_X 82 LARKEALEKELERH 95 (354)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
No 419
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=75.21 E-value=3.4 Score=34.30 Aligned_cols=73 Identities=12% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHH
Q 010679 51 MEQKIASQHVEMQKLATENQ-RLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK 123 (504)
Q Consensus 51 LEqeLe~~~eEIq~Le~e~q-rLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ 123 (504)
|..+++.+..+......++. ..+.++...-+|+..+++.+-.|+....+++..-+.+|..|+.++......+.
T Consensus 19 ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe~r~~q~~ 92 (92)
T 3vp9_A 19 IRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEEEIKHLKLGLEQRDHQIA 92 (92)
T ss_dssp TTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
No 420
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=75.07 E-value=22 Score=29.64 Aligned_cols=62 Identities=15% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 010679 140 QNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLES 204 (504)
Q Consensus 140 qeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eq 204 (504)
++|..+.-+|+..+..|+.+-.+++...... -..|.+|..|+++|+.+-+.+....+....+
T Consensus 33 qELIqEYl~LE~~~s~le~e~~rlr~~~~~~---~~~v~eLe~everL~~ENq~L~~e~~~~~~~ 94 (104)
T 3s9g_A 33 QELIKEYLELEKSLSRMEDENNRLRLESKRL---DARVRELELELDRLRAENLQLLTENELHRQQ 94 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---hhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
No 421
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=75.07 E-value=6.6 Score=26.76 Aligned_cols=35 Identities=14% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 53 QKIASQHVEMQKLATENQRLAATHGTLRQELAAAQ 87 (504)
Q Consensus 53 qeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lq 87 (504)
+++.++.++++.|..++..|+.+...|+.-|...+
T Consensus 1 eRMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~~~ 35 (36)
T 1kd8_B 1 XKVKQLKAKVEELKSKLWHLKNKVARLKKKNAECK 35 (36)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhcccc
No 422
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=74.92 E-value=17 Score=29.53 Aligned_cols=55 Identities=7% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 010679 133 QKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHC 187 (504)
Q Consensus 133 eqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~L 187 (504)
++-+.-|.+...+-.+|...+..+..+|..++.+.+++..+-....-|-.-|++|
T Consensus 27 E~Rr~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~la~~i~~L 81 (83)
T 1wlq_A 27 EQRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVIERL 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 423
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=74.60 E-value=50 Score=29.91 Aligned_cols=132 Identities=16% Similarity=0.176 Sum_probs=0.0
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHH-HHHHHHHH-----HHHHH-HHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Q 010679 42 FDMMPPPEVMEQKIASQHVEMQKL-ATENQRLA-----ATHGT-LRQELAAAQHELQILHGQIGGMKSERELQMRNLTEK 114 (504)
Q Consensus 42 ~~~~p~~~~LEqeLe~~~eEIq~L-e~e~qrLe-----~qi~~-LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~ek 114 (504)
++..++.+.+...+-..-..+... ...+..|. .++.. |...+..+...+..++..|.=+..+ -...|...
T Consensus 20 ~~~~~~le~v~~~~w~Y~~q~~~~a~~~v~ql~~sel~qel~~~l~~~ld~l~~~~~~l~~~L~P~t~e---l~~~l~~~ 96 (165)
T 1gs9_A 20 WQSGQRWELALGRFWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLTPVAEE---TRARLSKE 96 (165)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSH---HHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH---HHHHHHHH
Q ss_pred HHHHHHHHH-HHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 010679 115 IAKMEAELK-TAEPVKLEFQKSKTEAQNLVV-AREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYH 185 (504)
Q Consensus 115 i~kLEaEL~-ele~LkaELeqLr~ELqeL~a-erqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq 185 (504)
...|.++|. .++.++..|+....++..... ...++..++.-+..+|. ..+...+++|+..|.
T Consensus 97 ~e~Lr~~L~~d~EelR~~l~p~~~el~~~l~~~~EelR~kl~P~~eeL~---------~~~~~~~eeLr~kL~ 160 (165)
T 1gs9_A 97 LQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLR---------KRLLRDADDLQKRLA 160 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHhhHHHHHHHhh
No 424
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene}
Probab=74.50 E-value=63 Score=31.10 Aligned_cols=200 Identities=15% Similarity=0.078 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHH
Q 010679 26 PFVSGMRPPMPGAFPPFDMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERE 105 (504)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E 105 (504)
|=.....|| .-+.+|----+..+.|+.+|....+ .+...+.+.|..--+....+-+.++..+.....-+......++
T Consensus 23 pps~~~~~~-~~~s~P~kk~~SleEIqkKLeAAEE--RRks~Ea~~lk~laekrEhe~evlqKa~Een~~F~k~aeEkL~ 99 (240)
T 4f61_I 23 PPSFDGVPE-FNASLPRRRDPSLEEIQKKLEAAEE--RRKYQEAELLKHLAEKREHEREVIQRAIEENNNWIKMAKEKLA 99 (240)
T ss_dssp CCSSCSSCC-CC------CCCCHHHHHHHHHHHHH--HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 010679 106 LQMRNLTEKI-AKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEY 184 (504)
Q Consensus 106 ~eL~eL~eki-~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqEL 184 (504)
..+....+.. ..+.+.+..+.....-++.++..+........+...+--+-.-+...-+...+....|+.--+....+.
T Consensus 100 ~KME~~kEnReA~laal~erLkek~~~aeeVRr~~~~~~~~~~k~~~eei~~KLeaAeErRk~qea~~Lk~LaekrEHe~ 179 (240)
T 4f61_I 100 QKMESNKENREAHFAAMLERLQEKDKHAEEVRQRAIEENNNWIKMAKEKLAQKMESNKENRKYQEAELLKHLAEKREHER 179 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Q 010679 185 HHCRGTYEYEKKFYNDHLESLQV-MEKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 185 q~LR~eLe~~kk~~~el~eqlqe-mek~L~sme~EiekLraELek 228 (504)
+-+...++....-.....+++.. |+.....-+.-+..+...|..
T Consensus 180 eVlqka~e~n~~f~k~~eekl~~KmE~~kEnRea~~~a~~ErL~e 224 (240)
T 4f61_I 180 EVIQRAIEENNNWIKMAKEKLAQKMESNKENREAHFAAMLERLQE 224 (240)
T ss_dssp HHTTHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
No 425
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=74.49 E-value=47 Score=36.87 Aligned_cols=115 Identities=11% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHH-------
Q 010679 51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK------- 123 (504)
Q Consensus 51 LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~------- 123 (504)
++-+++....+.+.+..+.+.-.+-++.+..-+..+.+-++.++.. ......++.-+....-.-.+.++-|.
T Consensus 557 ~~~R~~v~~rR~~~~L~k~~~r~hilegl~~a~~~iD~vI~iIr~s-~~~~~a~~~L~~~f~lse~Qa~aIL~m~L~rLt 635 (692)
T 2xcs_B 557 LEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRES-DTDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 635 (692)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTC-SSHHHHHHHHHHHHTCCHHHHHHHHTCBGGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHhC-CCHHHHHHHHhhccCCCHHHHHHHHHhHHHHhh
Q ss_pred --HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 124 --TAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTD 166 (504)
Q Consensus 124 --ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~e 166 (504)
+.++++.|+++++.++.+++..+.+-....+-+.++|..++.+
T Consensus 636 ~le~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~ 680 (692)
T 2xcs_B 636 GLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDR 680 (692)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
No 426
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=74.46 E-value=4.5 Score=30.76 Aligned_cols=42 Identities=24% Similarity=0.373 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHEL 90 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL 90 (504)
..-.+.+..+..++..|..++..|..++..|+.++..+.+.|
T Consensus 18 ~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 18 KRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 427
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=74.43 E-value=9 Score=28.91 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010679 58 QHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI 97 (504)
Q Consensus 58 ~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L 97 (504)
....+..|+.+...|..+...|+.++..++.++..|...|
T Consensus 20 Kk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 428
>3euh_A Protein KICB, chromosome partition protein MUKF; chromosome condensation, condensin, non-SMC subunit, kleisin, calcium, cell cycle, cell division; 2.90A {Escherichia coli} PDB: 3rpu_A
Probab=74.37 E-value=20 Score=37.17 Aligned_cols=141 Identities=11% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHH
Q 010679 56 ASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTA--EPVKLEFQ 133 (504)
Q Consensus 56 e~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~el--e~LkaELe 133 (504)
..+.-.+..+..++++..+..++-..+-.-.++-..-|+=.++++..-.+..-+.+.++...+++++.++ +...+.|.
T Consensus 123 l~LS~qls~va~EL~~a~~Aaee~~~e~~W~~~V~~~LkySVaeifd~Idl~QR~mDeQQ~~vk~eIA~LL~~dW~~AI~ 202 (440)
T 3euh_A 123 LRLSMQLSIVAGELKRAADAAEEGGDEFHWHRNVYAPLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAIS 202 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHTTHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCcHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Q 010679 134 KSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKK 196 (504)
Q Consensus 134 qLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk 196 (504)
.++.-|.++...+.+|+..++..-.+++..-..+|+...-..+++.+.+-+..|...|+....
T Consensus 203 ~Ce~LL~Ets~tLRELqdtL~aagD~lq~qLl~IQ~~~~~~~~l~~vd~l~~~Lq~kLDRI~s 265 (440)
T 3euh_A 203 SCELLLSETSGTLRELQDTLEAAGDKLQANLLRIQDATMTHDDLHFVDRLVFDLQSKLDRIIS 265 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCGGGTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHH
No 429
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=74.30 E-value=26 Score=26.98 Aligned_cols=65 Identities=17% Similarity=0.184 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679 167 VQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 231 (504)
Q Consensus 167 lqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~ 231 (504)
+..+.+-..+|..+.+.+.+|..-+..+.....+.-+.+..++.++......+++...+|.++.+
T Consensus 2 l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 66 (69)
T 3b5n_B 2 LAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVK 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 430
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=74.26 E-value=14 Score=30.04 Aligned_cols=55 Identities=16% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHH
Q 010679 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSE 103 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae 103 (504)
+...++.-....+.+.|..-..+|..+|..-+++|..++.+|.+.+..|..+...
T Consensus 26 EaA~Ee~YfrqkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~~ 80 (84)
T 1gmj_A 26 EQAEEERYFRARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQS 80 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
No 431
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=74.25 E-value=21 Score=30.04 Aligned_cols=87 Identities=10% Similarity=-0.014 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 149 LIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 149 L~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELek 228 (504)
+...-+..+..+..++++.+++..+...+.+|.+-..++-..++.....++.++..+.....+++.-.+++.+..+--.+
T Consensus 2 ~~~~~~~a~~~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~ 81 (109)
T 3hd7_B 2 SHMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSK 81 (109)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred ccccccc
Q 010679 229 APNVDRR 235 (504)
Q Consensus 229 le~~~~~ 235 (504)
.++.-.|
T Consensus 82 ~rkk~~i 88 (109)
T 3hd7_B 82 ARRKKIM 88 (109)
T ss_dssp HHHHHHH
T ss_pred ccCccee
No 432
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=74.21 E-value=37 Score=28.24 Aligned_cols=91 Identities=11% Similarity=0.074 Sum_probs=0.0
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010679 96 QIGGMKSERELQMRNLTEKIAKMEAELK------TAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQ 169 (504)
Q Consensus 96 ~L~~l~ae~E~eL~eL~eki~kLEaEL~------ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqq 169 (504)
.+.++...+...+.-...++..-...=+ .++.|=..|..+...|-+...+..+.....+.|+.+|.+++.-.+-
T Consensus 1 ~~~ef~~~l~~sv~if~NRmksn~~RGrsi~nDssVQsLF~~lt~MH~~Ll~~i~~~ee~R~~yE~LQDkL~qi~eAR~A 80 (98)
T 3f1i_H 1 SHEQFLKALQNAVTTFVNRMKSNHMRGRSITNDSAVLSLFQSINGMHPQLLELLNQLDERRLYYEGLQDKLAQIRDARGA 80 (98)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHH-HHHHHHHHHH
Q 010679 170 IPALLSE-LESLRQEYHH 186 (504)
Q Consensus 170 l~~L~~E-IeaLrqELq~ 186 (504)
|.+|+.| -+.|+++.++
T Consensus 81 LdaLR~eH~~Klrr~aee 98 (98)
T 3f1i_H 81 LSALREEHREKLRRAAEE 98 (98)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhcC
No 433
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=74.19 E-value=3.4 Score=37.04 Aligned_cols=45 Identities=11% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 010679 155 QLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYN 199 (504)
Q Consensus 155 ~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~ 199 (504)
.|..+++.++++++.+..|..+++.|+.+|+.++..+...++...
T Consensus 3 ~l~~~~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~ 47 (182)
T 3kqg_A 3 TLNAQIPELKSDLEKASALNTKIRALQGSLENMSKLLKRQNDILQ 47 (182)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 434
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=74.12 E-value=14 Score=26.96 Aligned_cols=42 Identities=17% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 187 CRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 187 LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELek 228 (504)
.+..+..++..+..+..++++++..-..+++||++|++-|..
T Consensus 2 aeq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 2 SERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
No 435
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=74.06 E-value=14 Score=31.98 Aligned_cols=63 Identities=17% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccC
Q 010679 175 SELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRAAD 238 (504)
Q Consensus 175 ~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~~~~~~~~ 238 (504)
.|..++-+.+-..+.+++.+++.+.++...+.+.+..+..+..+.+.|+.++++..... |..+
T Consensus 4 ~e~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~~~~~~~~~~-W~~d 66 (125)
T 1joc_A 4 DERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKHTQALNRK-WAED 66 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCG
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCCc-cccC
No 436
>3a5c_G V-type ATP synthase subunit D; V-ATPase, asymmetric, rotation, vacuolar type, hydrolase, ATP synthesis, ATP-binding, hydrogen ION transport; HET: ADP; 4.51A {Thermus thermophilus} PDB: 3a5d_G 3j0j_G*
Probab=74.05 E-value=56 Score=30.96 Aligned_cols=168 Identities=11% Similarity=0.032 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchH--------HHHHHHHHHHHHHHHHHHH
Q 010679 50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS--------ERELQMRNLTEKIAKMEAE 121 (504)
Q Consensus 50 ~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~a--------e~E~eL~eL~eki~kLEaE 121 (504)
.+..+|...+.=..-|....+.|..++..+..++..+++++...-........ +.-..+........+++..
T Consensus 13 ~lK~rL~~a~rG~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~~~~~~~~~~~v~~~ 92 (223)
T 3a5c_G 13 QRRGQLRLAQKGVDLLKKKRDALVAEFFGLVREAMEARKALDQAAKEAYAALLLAQAFDGPEVVAGAALGVPPLEGVEAE 92 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------------------------
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHhcCCCCeEEEEE
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHH-HHHHHH
Q 010679 122 LKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYE-KKFYND 200 (504)
Q Consensus 122 L~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~-kk~~~e 200 (504)
.+.+..+.-=.-+.. +.....--...--.+++.+...+.++...+-++..+...+..|-.|+..-+..+..+ ...+-.
T Consensus 93 ~~nImGV~vP~~~~~-~~~~~~ygl~~t~~~ld~a~~~~~~~l~~lvelA~le~~~~~L~~eIkkT~RRVNALE~viIP~ 171 (223)
T 3a5c_G 93 VENVWGSKVPRLKAT-FPDGALLSPVGTPAYTLEASRAFRRYAEALIRVANTETRLKKIGEEIKKTTRRVNALEQVVIPG 171 (223)
T ss_dssp ----------------------------------------CHHHHHHTHHHHHHHHHHHTHHHHHHTHHHHHHHHHHHHH
T ss_pred EEEEEEEEeceEEec-cCCCCCcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhccc
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010679 201 HLESLQVMEKNYITMATE 218 (504)
Q Consensus 201 l~eqlqemek~L~sme~E 218 (504)
+++.++-+...|+++++|
T Consensus 172 le~tikyI~~~LdE~ERe 189 (223)
T 3a5c_G 172 IRAQIRFIQQVLEQRERE 189 (223)
T ss_dssp HTHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHH
No 437
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=74.01 E-value=20 Score=26.74 Aligned_cols=47 Identities=17% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 173 LLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEV 219 (504)
Q Consensus 173 L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~Ei 219 (504)
|..-+=+|+.|++.|+++...+++.+++.+...+.+|+-+-.+-+..
T Consensus 8 lVDtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k~~ 54 (56)
T 2w6b_A 8 LVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNM 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 438
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=73.99 E-value=19 Score=29.02 Aligned_cols=56 Identities=7% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 010679 132 FQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHC 187 (504)
Q Consensus 132 LeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~L 187 (504)
.++-+.-|.+...+-.+|..+|..+..+|..++.+...+.++..+...|-.-|+++
T Consensus 22 AE~RR~AL~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~laevl~~l 77 (79)
T 2zxx_A 22 AEQRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVIERL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 439
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=73.94 E-value=20 Score=34.64 Aligned_cols=76 Identities=14% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 010679 62 MQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQN 141 (504)
Q Consensus 62 Iq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~LkaELeqLr~ELqe 141 (504)
+..|..+.+.+..+++-|.-+-.-+..||..+...|++ ++...+.+.++++.+|.+-..|+.....++.....+++
T Consensus 151 l~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~----L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~qE 226 (242)
T 3uux_B 151 PSALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVEN----LRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLEE 226 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
No 440
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=73.84 E-value=6.7 Score=32.55 Aligned_cols=65 Identities=20% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 010679 142 LVVAREELIAKVHQLTQDL--QRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQ 206 (504)
Q Consensus 142 L~aerqeL~aqvq~L~~EL--q~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlq 206 (504)
...+..+|..++..|..|+ ...+.+-.+=..|+..++.|..||+.+..+|...+.........+.
T Consensus 21 ~a~~~~~lk~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~~k~~F~~~~~~~~ 87 (93)
T 3sjb_C 21 LSKKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSENKAFQAHLHKLE 87 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred hHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 441
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=73.83 E-value=25 Score=28.70 Aligned_cols=62 Identities=21% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 010679 111 LTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPA 172 (504)
Q Consensus 111 L~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~ 172 (504)
...+...-++--+..+.-+....++..++..|..+-..|..+|+.|+.++..|+.-+.+++.
T Consensus 17 ~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 17 KIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcH
No 442
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=73.58 E-value=24 Score=29.46 Aligned_cols=57 Identities=18% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 010679 119 EAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLS 175 (504)
Q Consensus 119 EaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~ 175 (504)
.+-+.+-..|...++.+..+-..++........+|.+|..+|.+|+.+.+.|.....
T Consensus 33 qELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 33 QELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHH
No 443
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=73.56 E-value=7.2 Score=40.64 Aligned_cols=58 Identities=17% Similarity=0.215 Sum_probs=0.0
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch
Q 010679 44 MMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMK 101 (504)
Q Consensus 44 ~~p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ 101 (504)
|=-....|+++|..+.++++.|+.+++++..++..++++|...+.+..+|+.++.+++
T Consensus 1 ~~~~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 1 MGSMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 444
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=73.38 E-value=26 Score=27.44 Aligned_cols=70 Identities=16% Similarity=0.137 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 010679 167 VQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRA 236 (504)
Q Consensus 167 lqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~~~~~~ 236 (504)
+..+.+-..+|..+...+.+|..-+..+-....+.-+.+..++.++......+++...+|.++.+-.+.+
T Consensus 2 l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~ 71 (77)
T 1jth_B 2 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKA 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 445
>1m5i_A APC protein; coiled-coil, antitumor protein; 2.00A {Homo sapiens} SCOP: h.4.13.1
Probab=73.34 E-value=45 Score=28.80 Aligned_cols=103 Identities=13% Similarity=0.026 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 010679 125 AEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLES 204 (504)
Q Consensus 125 le~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eq 204 (504)
++.|..+-.-|..+|++-..++.=.-++++.|...|..+-....---...--+..|.-|.++++..++..--..++.+..
T Consensus 9 leeL~rer~~Ll~EieKEekek~wyysqlq~l~kRi~~lP~~e~fs~Q~D~iRqQLefEa~~irs~mEEr~Gt~deM~qR 88 (125)
T 1m5i_A 9 LEELEKERSLLLADLDKEEKEKDWYYAQLQNLTKRIDSLPLTENFSLQTDMTRRQLEYEARQIRVAMEEQLGTCQDMEKR 88 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010679 205 LQVMEKNYITMATEVEKLRAELM 227 (504)
Q Consensus 205 lqemek~L~sme~EiekLraELe 227 (504)
.+.-...++.++++|-.+...+.
T Consensus 89 aQiRv~r~qqIe~eil~iq~~~q 111 (125)
T 1m5i_A 89 AQRRIARIQQIEKDILRIRQLLQ 111 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHhhc
No 446
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=73.22 E-value=77 Score=31.49 Aligned_cols=152 Identities=11% Similarity=0.041 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccc-------hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 010679 73 AATHGTLRQELAAAQHELQILHGQIGGM-------KSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVA 145 (504)
Q Consensus 73 e~qi~~LkqELa~lqqEL~~L~~~L~~l-------~ae~E~eL~eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL~ae 145 (504)
..++..+.+.+..++.-+..|....... ..+.+..+..+..++..++.++.+++....+++..+.-+..|..-
T Consensus 59 ~~~~~~~~~~~~k~~~~~~~L~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~p~ 138 (357)
T 3rrk_A 59 EAELKRWEAVVSQAEQSLTVVGLATVPSSKPFTGSLEEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLAAL 138 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCCSSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHHHHHHHHHHHhcccccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q ss_pred H--------------HH-HHHHHHHHHHHHHHHHH--------------------------hhhhh--------------
Q 010679 146 R--------------EE-LIAKVHQLTQDLQRAHT--------------------------DVQQI-------------- 170 (504)
Q Consensus 146 r--------------qe-L~aqvq~L~~ELq~l~~--------------------------elqql-------------- 170 (504)
. .- -...+..++..|.+... ++.++
T Consensus 139 ~~~ld~~~~~g~~~g~ip~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~v~~il~s~~f~~~~~p~~ 218 (357)
T 3rrk_A 139 AHGLDESPRLGVIPFLVAKPEELEAVRKALQEALADRFVLEAEPLENQLAALVVVKRSELEAARSSLSRLGLAELRFPGA 218 (357)
T ss_dssp TTTTTTCTTEEEEEEEESCHHHHHHHHHHHHHHHTTSCEEEEEECSSSEEEEEEEEGGGHHHHHHHHHTTTCCBCCCCGG
T ss_pred hccCCccceeeeeeEEecChhhHHHHHHHHHHhcCCeEEEEeecCCCcEEEEEEEEHHHHHHHHHHHHHCCCeeccCCcc
Q ss_pred -h--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 010679 171 -P--ALLSELESLRQEYHHCRGTYEYEKKFYNDHLES-LQVMEKNYITMATEVEKLRA 224 (504)
Q Consensus 171 -~--~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eq-lqemek~L~sme~EiekLra 224 (504)
. .-...+..++.++++++.+++..++.+..+.+. ...+..-...+..+.+..+.
T Consensus 219 ~~~~~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~ 276 (357)
T 3rrk_A 219 YGAMPLGKAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKDEVARYKA 276 (357)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 447
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=73.22 E-value=35 Score=29.28 Aligned_cols=103 Identities=9% Similarity=0.033 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 010679 129 KLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVM 208 (504)
Q Consensus 129 kaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqem 208 (504)
...|.-.-.-+..|..+..-...+++.....|++++.+-...-.++++.+.|+.-..-+-.-...+.+.+.+|.+.+.+.
T Consensus 7 lrqLkIktg~vkRL~KE~~~Y~kE~~~q~~kiekmk~e~~dey~iKkq~evL~Et~~mipd~~~RL~~a~~~L~~~l~~~ 86 (116)
T 3mxz_A 7 IRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRMMIPDCHKRLESALADLKSTLAEL 86 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc
Q 010679 209 EKNYITMATEVEKLRAELMNAPN 231 (504)
Q Consensus 209 ek~L~sme~EiekLraELekle~ 231 (504)
+..-..-..++...+.-|+..+.
T Consensus 87 ~~~~~~~~ee~~~Ak~~l~~ae~ 109 (116)
T 3mxz_A 87 EETDEKEGPEIEDAKKTVADVEK 109 (116)
T ss_dssp HTC-CCCCHHHHHHHHHHHHHHT
T ss_pred cccCCCChHHHHHHHHHHHHHHH
No 448
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=73.19 E-value=5.4 Score=27.17 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 53 QKIASQHVEMQKLATENQRLAATHGTLRQELAAAQ 87 (504)
Q Consensus 53 qeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lq 87 (504)
+++.++..+++.|..++..|+.+...|+..|....
T Consensus 1 eRMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~~e 35 (36)
T 1kd8_A 1 XEVKQLEAEVEEIESEVWHLENEVARLEKENAECE 35 (36)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcccc
No 449
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=73.18 E-value=39 Score=28.08 Aligned_cols=89 Identities=12% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 010679 104 RELQMRNLTEKIAKMEAELKTAE------PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSEL 177 (504)
Q Consensus 104 ~E~eL~eL~eki~kLEaEL~ele------~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EI 177 (504)
.+.-+..|...+.-+...++... .....++.|=..|..+..++-....+.++.......++.++.+|.+.++-|
T Consensus 2 ~~ef~~~l~~sv~if~NRmksn~~RGrsi~nDssVQsLF~~lt~MH~~Ll~~i~~~ee~R~~yE~LQDkL~qi~eAR~AL 81 (98)
T 3f1i_H 2 HEQFLKALQNAVTTFVNRMKSNHMRGRSITNDSAVLSLFQSINGMHPQLLELLNQLDERRLYYEGLQDKLAQIRDARGAL 81 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhHH
Q 010679 178 ESLRQEYHHCRGTYE 192 (504)
Q Consensus 178 eaLrqELq~LR~eLe 192 (504)
++|+.|..+...+..
T Consensus 82 daLR~eH~~Klrr~a 96 (98)
T 3f1i_H 82 SALREEHREKLRRAA 96 (98)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
No 450
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Probab=73.13 E-value=29 Score=29.50 Aligned_cols=77 Identities=12% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 150 IAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 150 ~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELek 228 (504)
..++..|..+|.....++.++.=+..|+....+.+.....-=+ ..-+....+..+.|+.++..+...|+++..+|+.
T Consensus 23 ~~ELeSlK~EL~HfE~rl~K~rH~~~el~l~~~k~~~~~~~g~--~e~~s~~~ek~~~le~k~Kk~~~kV~Kl~~dl~~ 99 (109)
T 2fcw_A 23 DKELEAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHAESVGD--GERVSRSREKHALLEGRTKELGYTVKKHLQDLSG 99 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc--hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 451
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=73.12 E-value=19 Score=28.33 Aligned_cols=58 Identities=17% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhhHHHHHHHHHHHHHHHHHhhHHHHH
Q 010679 138 EAQNLVVAREELIAKVHQLTQDLQRAHTDV----QQIPALLSELESLRQEYHHCRGTYEYEK 195 (504)
Q Consensus 138 ELqeL~aerqeL~aqvq~L~~ELq~l~~el----qql~~L~~EIeaLrqELq~LR~eLe~~k 195 (504)
++.+|..++..|.....+...+|-.+-+++ ++|.++-++.=..-+++..+++++..+.
T Consensus 4 di~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~~ 65 (71)
T 2js5_A 4 GAEELKAKLKKLNAQATALKMDLHDLAEDLPTGWNRIMEVAEKTYEAYRQLDEFRKSTASLE 65 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 452
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=73.09 E-value=32 Score=27.46 Aligned_cols=77 Identities=12% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 141 NLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVE 220 (504)
Q Consensus 141 eL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~Eie 220 (504)
.....+..|..+++.|......+...+. .|++.++.-+..-+.....+..+-+-.|..|+.+...+.
T Consensus 3 ~~~~AI~~Lr~~~d~L~kkq~~L~~~i~-------------~e~~~Ak~~~~knK~~Al~aLkrKK~~E~qL~q~~~ql~ 69 (79)
T 4abm_A 3 MEQEAIQRLRDTEEMLSKKQEFLEKKIE-------------QELTAAKKHGTKNKRAALQALKRKKRYEKQLAQIDGTLS 69 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHcCHHHHHHHHHHHhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhcc
Q 010679 221 KLRAELMNAP 230 (504)
Q Consensus 221 kLraELekle 230 (504)
.|+..+..++
T Consensus 70 ~LE~q~~~iE 79 (79)
T 4abm_A 70 TIEFQREALE 79 (79)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
No 453
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=73.03 E-value=1.8 Score=37.98 Aligned_cols=104 Identities=11% Similarity=0.118 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 010679 125 AEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLES 204 (504)
Q Consensus 125 le~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eq 204 (504)
++.+-.+....+.-..+|......+..+++.+..+|+.+..+++ ...-..+...++.+|+.+..+++...........+
T Consensus 11 ~~~i~~~~~~~k~a~~~l~~~~~~~~~el~~~~~el~~~~~~lq-~~ls~~~~~~~~~el~~~~~~~q~~~~~~~~~l~~ 89 (143)
T 1u2m_A 11 MGSLFQQVAQKTGVSNTLENEFKGRASELQRMETDLQAKMKKLQ-SMKAGSDRTKLEKDVMAQRQTFAQKAQAFEQDRAR 89 (143)
T ss_dssp HHHHHHHHHHHHTTTTTTC----------------------------------------------------------CHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679 205 LQVMEKNYITMATEVEKLRAELMNAPN 231 (504)
Q Consensus 205 lqemek~L~sme~EiekLraELekle~ 231 (504)
.+ .+.+..+...|...-.++.+.++
T Consensus 90 ~~--~~~~~~i~~~i~~ai~~vak~~g 114 (143)
T 1u2m_A 90 RS--NEERGKLVTRIQTAVKSVANSQD 114 (143)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHCC
No 454
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=72.89 E-value=44 Score=37.59 Aligned_cols=114 Identities=14% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hccchHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 010679 52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQ----IGGMKSERELQMRNLTEKIAKMEAELKTAEP 127 (504)
Q Consensus 52 EqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~----L~~l~ae~E~eL~eL~eki~kLEaEL~ele~ 127 (504)
...+..+.+....+..+....-..+..++.++..+..++..+..+ -.+-...++.++..+.+++..+....+....
T Consensus 379 ~kai~lldea~a~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (854)
T 1qvr_A 379 DKAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWERERE 458 (854)
T ss_dssp HHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHH
Q 010679 128 VKLEFQKSKTEAQNLVVAREELI-------------AKVHQLTQDLQRAHT 165 (504)
Q Consensus 128 LkaELeqLr~ELqeL~aerqeL~-------------aqvq~L~~ELq~l~~ 165 (504)
...++..++.++.+++.+..+.+ ..+..|+.+|..++.
T Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (854)
T 1qvr_A 459 ILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSE 509 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhcccHHHHHHHhhhhhHHHHHHHHHHHh
No 455
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=72.78 E-value=15 Score=33.02 Aligned_cols=73 Identities=14% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 010679 133 QKSKTEAQNLVVAREELIAKVHQLTQDL----QRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESL 205 (504)
Q Consensus 133 eqLr~ELqeL~aerqeL~aqvq~L~~EL----q~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eql 205 (504)
+.+...+.++...+-....+|+.|-..| ..-....++|..|..|+.++.+|++++..+.+.+-+.+..+...+
T Consensus 53 ~~f~~~~~ela~dli~kakqIe~LIdsLPg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~i 129 (151)
T 1yke_B 53 EEFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDF 129 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 456
>1t7s_A BAG-1 cochaperone; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.80A {Caenorhabditis elegans} SCOP: a.7.7.1
Probab=72.70 E-value=13 Score=32.85 Aligned_cols=112 Identities=13% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----
Q 010679 56 ASQHVEMQKLATENQRLAATHGTLR-QELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVK----- 129 (504)
Q Consensus 56 e~~~eEIq~Le~e~qrLe~qi~~Lk-qELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~Lk----- 129 (504)
+..-..+..++.........+..+. .+|..+++-.-.-......+.. ++.++..+.+...++-+.|..+.--.
T Consensus 15 d~~lK~L~~~Ek~~~~~~~kl~~~n~~el~~iekGFL~k~l~~ea~kk-ldKrik~~~E~~MK~LE~LDsl~i~~~~t~~ 93 (137)
T 1t7s_A 15 DAGFKMLMQYEKHNLSNLQKAYDLNLRDVADLERGFLEKPKQVEMGKK-LEKKVKYFNEEAERHLETLDGMNIITETTPE 93 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTEEECCCCCGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHhhhccHhHHhHHHH-HHHHHHHHHHHHHHHHHHhhcccCCcccchh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010679 130 LEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ 168 (504)
Q Consensus 130 aELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elq 168 (504)
.+....|.....+...+|.+-++.+.|...|.+....++
T Consensus 94 ~q~~~~R~KRK~lV~~IQ~~L~~~D~l~~~i~~~~~~~~ 132 (137)
T 1t7s_A 94 NQAKRNREKRKTLVNGIQTLLNQNDALLRRLQEYQSVLN 132 (137)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHHh
No 457
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=72.66 E-value=24 Score=28.81 Aligned_cols=85 Identities=7% Similarity=0.014 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH---HHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 138 EAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPAL---LSE-LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYI 213 (504)
Q Consensus 138 ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L---~~E-IeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~ 213 (504)
+...+.....++......|...|..++..++.|... .-+ -+.......+.....+.++..+.++...+...-.++.
T Consensus 12 ~~~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L~~i~~~l~~a~~~y~ 91 (103)
T 4i0x_B 12 DLDHIEQVTSRARGFKEFVTENLDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGLSQMEEAARTAHGAYS 91 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 010679 214 TMATEVEKL 222 (504)
Q Consensus 214 sme~EiekL 222 (504)
..++....+
T Consensus 92 ~~e~~~a~~ 100 (103)
T 4i0x_B 92 EAQEANLRM 100 (103)
T ss_dssp ---------
T ss_pred HHHHHHHhh
No 458
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=72.58 E-value=5 Score=47.31 Aligned_cols=171 Identities=9% Similarity=0.050 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHH------HHHHH
Q 010679 51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKME------AELKT 124 (504)
Q Consensus 51 LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLE------aEL~e 124 (504)
+++-|..--. .+++-=.+|.+..+..++.+|..++.++.-++.-|...+.-....+.+|.+.|.+.. ..+..
T Consensus 990 l~eiL~~f~~--~R~e~~~rRk~~~l~~l~~~l~k~~~r~~fi~~vi~~~L~i~~~~~devI~~Lr~~~~~~~ak~~~~~ 1067 (1177)
T 4gfh_A 990 VNEILSEFYY--VRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPRFNKEGKPY 1067 (1177)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSSSCHHHHHHHHHHTTCCEECSSSCEE
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCeEEEecCCHHHHHHHHHHCCCcccchhhhhh
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH---------HHHHHHHHHHHHHHHhhHHHHH
Q 010679 125 AEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPAL---------LSELESLRQEYHHCRGTYEYEK 195 (504)
Q Consensus 125 le~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L---------~~EIeaLrqELq~LR~eLe~~k 195 (504)
......+......+.........+.....+.....+........+...| ..++++|..|++++..+|+.++
T Consensus 1068 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qydyIL~MrL~~LT~ee~ekL~~E~~e~~~ei~~L~ 1147 (1177)
T 4gfh_A 1068 YGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLLGMRIWSLTKERYQKLLKQKQEKETELENLL 1147 (1177)
T ss_dssp CCC------------------------------------CTTTCBTHHHHSSBGGGGSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhccccccccccccccchhhhhhcccccccchhhHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 010679 196 KFYNDH--LESLQVMEKNYITMATEVEKLR 223 (504)
Q Consensus 196 k~~~el--~eqlqemek~L~sme~EiekLr 223 (504)
+....- .+.|.++++++++..++-.+.|
T Consensus 1148 ~~s~~~lw~~DLd~~~~~~~~~~~~~~e~R 1177 (1177)
T 4gfh_A 1148 KLSAKDIWNTDLKAFEVGYQEFLQRDAEAR 1177 (1177)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhcC
No 459
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=72.46 E-value=78 Score=31.21 Aligned_cols=175 Identities=10% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH--HHHH
Q 010679 49 EVMEQKIASQHVEMQKLATENQ-------RLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKI--AKME 119 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~Le~e~q-------rLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki--~kLE 119 (504)
+.||++-.....+|...-...- .|...+..+..+++.+-+....+...|.. +....+..+..+. .++-
T Consensus 47 a~iE~~Yak~L~kLakk~~~~~~~~~e~gsl~~aw~~i~~e~e~~a~~H~~~a~~l~~---~v~~~l~~~~k~~~~k~~~ 123 (320)
T 3m3w_A 47 ARIEKAYAQQLADWARKWRGAVEKGPQYGTLEKAWHAFFTAAERLSELHLEVREKLHG---PDSERVRTWQRGAFHRPVL 123 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHH
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hhhhhHHHHHHHHHHHHHHHHH
Q 010679 120 AELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTD-----------VQQIPALLSELESLRQEYHHCR 188 (504)
Q Consensus 120 aEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~e-----------lqql~~L~~EIeaLrqELq~LR 188 (504)
..+++...+...+..+...+..+..++..........-.+....+.. ..++..+...+.....+++..+
T Consensus 124 ~~~ke~K~~~~~~~k~qk~~~~~~~~l~kaKk~Y~~~c~e~~~a~~~~~~~~~d~~~s~ke~~K~~~k~~k~~~~~~~a~ 203 (320)
T 3m3w_A 124 GGFRASRAAEDGFRKAQKPWLKRLKEVEASKKSYHTARKDEKTAQTRESHAKADSSMSQEQLRKLQERVGRCTKEAEKMK 203 (320)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSSCCC---CCSSSSSTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 189 GT----YEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 226 (504)
Q Consensus 189 ~e----Le~~kk~~~el~eqlqemek~L~sme~EiekLraEL 226 (504)
.+ ++.+++......+.+..+-+.++.|+.+.-..-.++
T Consensus 204 ~~Y~~~l~~~n~~~~~y~~~~~~~~~~~Q~lEe~Ri~~lk~~ 245 (320)
T 3m3w_A 204 TQYEQTLAELNRYTPRYMEDMEQAFESCQAAERQRLLFFKDV 245 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 460
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=72.41 E-value=62 Score=41.50 Aligned_cols=114 Identities=16% Similarity=0.155 Sum_probs=0.0
Q ss_pred ChHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHH
Q 010679 47 PPEVMEQKIA--SQHVEMQKLATENQRLAATHGTLRQELAAAQHE-LQILHGQIGGMKSERELQMRNLTEKIAKMEAELK 123 (504)
Q Consensus 47 ~~~~LEqeLe--~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqE-L~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ 123 (504)
.++-||++|- +...|.-.|+.++.+|..+..+.+.+|.+++++ |..|...-..++.+ .+|.+.++..+..-.
T Consensus 2124 T~~GLedQLL~~vv~~ErPdLE~~r~~Li~~~~~~k~~Lk~lEd~lL~~Ls~s~GniLdd-----~~lI~~L~~sK~~a~ 2198 (2695)
T 4akg_A 2124 NKESIETRIFDITLTEENAEMQRKREDLIKLNTEYKLKLKNLEKRLLEELNNSQGNMLEN-----DELMVTLNNLKKEAM 2198 (2695)
T ss_dssp CSHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCSTH-----HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccCc-----HHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 124 TAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT 165 (504)
Q Consensus 124 ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~ 165 (504)
+++....+.+..+.+|.+.+..-.-+...-..|=--|..+..
T Consensus 2199 eI~~kl~~a~~t~~~I~~~R~~YrpvA~r~s~LyF~i~dL~~ 2240 (2695)
T 4akg_A 2199 NIEKKLSESEEFFPQFDNLVEEYSIIGKHSVKIFSMLEKFGQ 2240 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
No 461
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=72.40 E-value=11 Score=28.79 Aligned_cols=40 Identities=20% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010679 58 QHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI 97 (504)
Q Consensus 58 ~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L 97 (504)
..+.+..|+.+...|..+...|+.++..++.++..|...+
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 462
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=72.39 E-value=13 Score=30.90 Aligned_cols=84 Identities=10% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 142 LVVAREELIAKVHQLTQDLQRA--HTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEV 219 (504)
Q Consensus 142 L~aerqeL~aqvq~L~~ELq~l--~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~Ei 219 (504)
.....++...++..|..-+.+. ........++..-++.|+..|++|+..+.-.++. -..+++.=.+-+..++++|
T Consensus 8 F~~V~~D~~~ql~~l~~~~~~~~~~~~~~~~~El~~~l~el~e~l~DL~~SI~i~e~~---~~~EI~~Rk~~v~~l~~~i 84 (95)
T 2c5k_T 8 FQQVVKDTKEQLNRINNYITRHNTAGDDDQEEEIQDILKDVEETIVDLDRSIIVMKRD---ENEDVSGREAQVKNIKQQL 84 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTS---TTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHh
Q 010679 220 EKLRAELMN 228 (504)
Q Consensus 220 ekLraELek 228 (504)
++|+.++..
T Consensus 85 ~~lk~~~~~ 93 (95)
T 2c5k_T 85 DALKLRFDR 93 (95)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
No 463
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=72.25 E-value=24 Score=30.87 Aligned_cols=66 Identities=12% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh-----------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 010679 147 EELIAKVHQLTQDLQRAHTDVQQI-----------PALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNY 212 (504)
Q Consensus 147 qeL~aqvq~L~~ELq~l~~elqql-----------~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L 212 (504)
.++...+.+|..+|-...++...| ++..+.|..|..|++.+..+++..-++.+.+.++++++-..+
T Consensus 53 ~~f~~~~~ela~dli~k~kqIe~LIdsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~i 129 (132)
T 1ykh_B 53 EEFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIEDF 129 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 464
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=71.98 E-value=47 Score=30.79 Aligned_cols=99 Identities=6% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------------cchHHHHHHHHHHHHHHHHHH
Q 010679 53 QKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG-------------GMKSERELQMRNLTEKIAKME 119 (504)
Q Consensus 53 qeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~-------------~l~ae~E~eL~eL~eki~kLE 119 (504)
+.|..++.=|+.+..+-++-.+++..+..+|+.++..+.-|.+-|. ++..++-..++.++.+|.+|-
T Consensus 48 eDL~~AN~LiK~m~~~d~~r~e~~~k~~~eLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li 127 (186)
T 1oxz_A 48 EDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLA 127 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 120 AELKTAEPVKLEFQKSKTEAQNLVVAREELIA 151 (504)
Q Consensus 120 aEL~ele~LkaELeqLr~ELqeL~aerqeL~a 151 (504)
.+...-+.+..|+-++..+|..+...-+.+..
T Consensus 128 ~e~~ddee~L~elL~~ND~Ln~vl~kY~~~~~ 159 (186)
T 1oxz_A 128 SDTEDNDEALAEILQANDNLTQVINLYKQLVR 159 (186)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHccCCHHHHHHHHHhhHHHHHHHHHHHHHhc
No 465
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=71.53 E-value=44 Score=28.88 Aligned_cols=91 Identities=5% Similarity=0.022 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHH-----
Q 010679 51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTA----- 125 (504)
Q Consensus 51 LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~el----- 125 (504)
.+..+..+.++|+.+...+=.++.++..++.-+-.+.-.|.++...-......+..++..+..-.-+-...|.-+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~L~~~l~~~aN~T~~aL~~L~~q~Tslr~~~LQNRraLD~Lla~qG 91 (125)
T 4g2k_A 12 FQGNMKQIEDKIEEILSKIYHIENEIARIKKLIGNLVSRLRRLANQTAKSLELLLRVTTEERTFSLINRHAIDFLLTRWG 91 (125)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred hcccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q ss_pred ------------------hHHHHHHHHHHHHHHH
Q 010679 126 ------------------EPVKLEFQKSKTEAQN 141 (504)
Q Consensus 126 ------------------e~LkaELeqLr~ELqe 141 (504)
+.++..+++++.++++
T Consensus 92 G~C~~l~e~CCfyind~g~~I~d~Iqkikkd~qK 125 (125)
T 4g2k_A 92 GTCKVLGPDCSIGIEDLSRNISEQIDQIKKDEQK 125 (125)
T ss_dssp CHHHHHCGGGGCCCCCCHHHHHHHHHHHHHHTTC
T ss_pred CcHHHhcccceeeccccchHHHHHHHHHHHHhcC
No 466
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=71.48 E-value=13 Score=30.05 Aligned_cols=63 Identities=11% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 010679 137 TEAQNLVVAREELIAKVHQLTQDLQRAHTDV----QQIPALLSELESLRQEYHHCRGTYEYEKKFYN 199 (504)
Q Consensus 137 ~ELqeL~aerqeL~aqvq~L~~ELq~l~~el----qql~~L~~EIeaLrqELq~LR~eLe~~kk~~~ 199 (504)
.++.+|+.++..|.....++..+|..|-+++ ++|.++-++.=..-.++..++++|..+.+...
T Consensus 15 ~di~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~e~~~~ 81 (81)
T 3csx_A 15 EAVADLKKKVRKLNSKAGQMKMDLHDLAEGLPTDYENLVETAEKTYEIFRELDQLKKKLNIWEETLK 81 (81)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
No 467
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=71.45 E-value=46 Score=30.25 Aligned_cols=93 Identities=11% Similarity=0.128 Sum_probs=0.0
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 010679 42 FDMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAE 121 (504)
Q Consensus 42 ~~~~p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaE 121 (504)
|--+.+.+.|.+-+..++..+..|+.++.+|+.+...++.+|..+...-..-...+ +...+-+....
T Consensus 3 ~~~~~p~e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki-------------~Ak~lvr~rk~ 69 (179)
T 2gd5_A 3 MAEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIV-------------LAKEMIRSRKA 69 (179)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH-------------HHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH-------------HHHHHHHHHHH
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Q 010679 122 LKTAEPVKLEFQKSKTEAQNLVVARE 147 (504)
Q Consensus 122 L~ele~LkaELeqLr~ELqeL~aerq 147 (504)
...+..++..|+.+...++.+.....
T Consensus 70 ~~~l~~~~a~l~~v~~~lqt~~~~~~ 95 (179)
T 2gd5_A 70 VSKLYASKAHMNSVLMGMKNQLAVLR 95 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 468
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=71.39 E-value=13 Score=27.15 Aligned_cols=42 Identities=17% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010679 58 QHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG 99 (504)
Q Consensus 58 ~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~ 99 (504)
...+|.+|..-+.+|...+.+|+..-....+|+.+|++-|.+
T Consensus 2 aeq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 2 SERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
No 469
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=71.27 E-value=25 Score=31.60 Aligned_cols=66 Identities=12% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh-----------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 010679 147 EELIAKVHQLTQDLQRAHTDVQQI-----------PALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNY 212 (504)
Q Consensus 147 qeL~aqvq~L~~ELq~l~~elqql-----------~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L 212 (504)
.++...+.+|..+|-...++...| ++..+.|..|..|++.+..+++..-++.+.+.++++++-..+
T Consensus 53 ~~f~~~~~ela~dli~kakqIe~LIdsLPg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~i 129 (151)
T 1yke_B 53 EEFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDF 129 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 470
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=71.18 E-value=17 Score=25.47 Aligned_cols=45 Identities=18% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEK 221 (504)
Q Consensus 177 IeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~Eiek 221 (504)
+..|..|...++.+-+.++++.-..+..+.-+++++..+++.|+.
T Consensus 5 vaqlenevaslenenetlkkknlhkkdliaylekeianlrkkiee 49 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIEE 49 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhcC
No 471
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=71.04 E-value=35 Score=30.51 Aligned_cols=93 Identities=17% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 49 EVMEQKIASQHVEMQKL--ATENQRLAATHGT-LRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTA 125 (504)
Q Consensus 49 ~~LEqeLe~~~eEIq~L--e~e~qrLe~qi~~-LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~el 125 (504)
..+++++....+++..+ +.+..++..++-. +.+.|..+.-.++.+...+.....+....+..+.+.+..+...++.+
T Consensus 6 ~~l~~~l~~~~~~l~~~~~~~er~~la~~l~~~l~~~L~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~r~~ 85 (218)
T 3ehh_A 6 ERLEEKLEDANERIAELVKLEERQRMARDLVDTLGQKLSLMGLKSDLARKLIYKDPEQAARELKSVQQTARTSLNEVRKI 85 (218)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred h------HHHHHHHHHHHHHHH
Q 010679 126 E------PVKLEFQKSKTEAQN 141 (504)
Q Consensus 126 e------~LkaELeqLr~ELqe 141 (504)
. .+...++.+...+..
T Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~ 107 (218)
T 3ehh_A 86 VSSMKGIRLKDELINIKQILEA 107 (218)
T ss_dssp HTTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHcCCcCHHHHHHHHHHHHHh
No 472
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=70.92 E-value=22 Score=28.02 Aligned_cols=82 Identities=12% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 88 HELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK--TAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT 165 (504)
Q Consensus 88 qEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~--ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~ 165 (504)
.+|..+...+.....+++..+..|...+..|...-. .-+.......+++..+.++...+.++...+.......+....
T Consensus 9 ~~l~~~A~~~~~~~~~l~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~y~~~d~ 88 (97)
T 2vs0_A 9 EEIRAKSQSYGQGSDQIRQILSDLTRAQGEIAANWEGQAFSRFEEQFQQLSPKVEKFAQLLEEIKQQLNSTADAVQEQDQ 88 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhh
Q 010679 166 DVQQ 169 (504)
Q Consensus 166 elqq 169 (504)
+...
T Consensus 89 ~~a~ 92 (97)
T 2vs0_A 89 QLSN 92 (97)
T ss_dssp ----
T ss_pred HHHH
No 473
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=70.90 E-value=9 Score=31.35 Aligned_cols=67 Identities=21% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 86 AQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAE-LKTAEPVKLEFQKSKTEAQNLVVAREELIAKV 153 (504)
Q Consensus 86 lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaE-L~ele~LkaELeqLr~ELqeL~aerqeL~aqv 153 (504)
++.+++..++.|..... ++-+|++=.+.+-+.-.+ .+....+..+|..+...|++|+.++++|.+.+
T Consensus 19 ~q~~le~~r~~ir~eI~-KElKiKeGaENL~katt~~kk~~~~V~~eL~~sn~kl~~L~~eL~eL~a~~ 86 (86)
T 1cxz_B 19 VQQQLELERERLRREIR-KELKLKEGAENLRRATTDLGRSLGPVELLLRGSSRRLDLLHQQLQELHAHV 86 (86)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHH-HHHhHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
No 474
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=70.89 E-value=5.1 Score=46.40 Aligned_cols=148 Identities=10% Similarity=0.024 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 010679 54 KIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQ 133 (504)
Q Consensus 54 eLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~LkaELe 133 (504)
.++.+...-..|+...++.+..+...-..++.+++...+.........+.++.....|.. ...-.++..++.+..+.+
T Consensus 844 ~~~~L~~~W~~L~~ae~er~~~L~~el~RlerL~~la~kf~~ka~~~e~Wl~eke~~l~s--~d~g~dl~~vqallkKhe 921 (995)
T 2ycu_A 844 TPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGS--NETGDSITAVQAKLKNLE 921 (995)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGGCCCCCCCHHHHHHHHHHH--HTHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cccccCHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHHHhhhhhhHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 010679 134 KSKTEAQNLVVARE-ELIAKVHQLTQDL-QRAHTDVQQIPAL-LSELESLRQEYHHCRGTYEYEKKFYNDHLE 203 (504)
Q Consensus 134 qLr~ELqeL~aerq-eL~aqvq~L~~EL-q~l~~elqql~~L-~~EIeaLrqELq~LR~eLe~~kk~~~el~e 203 (504)
.+..+|......+. ++....++|.++- -....-.++...+ ....+.|+.-.++-++.|+...+..+.+++
T Consensus 922 a~e~dl~a~e~ri~~~l~~~a~~L~~~~y~~~~~I~~R~~~l~~~~W~~L~~~a~~Rr~~L~~~~~~~q~~~~ 994 (995)
T 2ycu_A 922 AFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIED 994 (995)
T ss_dssp HHHHHHHHTTTCSCSSHHHHHHHHTTTHHHHHHHHHHHHTHHHHHHHHHHHSSSCCCC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 475
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=70.84 E-value=53 Score=31.15 Aligned_cols=127 Identities=10% Similarity=0.037 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 72 LAATHGTLRQELAAAQH-ELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELI 150 (504)
Q Consensus 72 Le~qi~~LkqELa~lqq-EL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~ 150 (504)
+..++++...+|.+.++ .+..++..|+. +.+++...+....|-+-.++.-.|+.|..-++....-.......|.
T Consensus 82 ~D~~~~~i~~~ln~~r~~~i~~lk~~Ie~-----~k~~q~~~~~~~~Lf~~~kEn~al~lEa~yre~~~~v~~EvK~rLD 156 (214)
T 2cly_A 82 ADKLNEQKIAQLEEVKQASIKQIQDAIDM-----EKSQQALVQKRHYLFDVQRNNIAMALEVTYRERLHRVYREVKNRLD 156 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 010679 151 AKVHQLTQDLQRAHTDVQQ--IPALLSELESLRQEYHHCRGTYEYEKKFYNDHLES 204 (504)
Q Consensus 151 aqvq~L~~ELq~l~~elqq--l~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eq 204 (504)
-++.--...-+..+.++.+ +...+++| .-++|-+-|.+-|.+++........+
T Consensus 157 y~v~~e~~~r~~eQ~~mv~wV~~~V~k~i-t~~~ek~~L~~cIadlk~La~~~~~~ 211 (214)
T 2cly_A 157 YHISVQNMMRQKEQEHMINWVEKRVVQSI-SAQQEKETIAKCIADLKLLSKKAQAQ 211 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC-----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHHhhhc
No 476
>2fup_A Hypothetical protein PA3352; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1
Probab=70.84 E-value=47 Score=28.85 Aligned_cols=101 Identities=13% Similarity=0.000 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHH------HHHHHHHHHHHHH
Q 010679 69 NQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVK------LEFQKSKTEAQNL 142 (504)
Q Consensus 69 ~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~Lk------aELeqLr~ELqeL 142 (504)
..-|..++..+++-+..+++|...|...-.......-.+...|.+++..++.+...+.... ..+..+... ...
T Consensus 9 ~~~L~~~~~~l~~L~~lL~~E~~~L~~~d~~~L~~i~~~k~~ll~~L~~~~~~R~~~l~~lg~~~~~~~~~~l~~~-~~~ 87 (157)
T 2fup_A 9 LDLFAEDIGHANQLLQLVDEEFQALERRELPVLQQLLGAKQPLMQQLERNGRARAEILREAGVSLDREGLARYARE-RAD 87 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHTT-CTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHhc-ccc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 010679 143 VVAREELIAKVHQLTQDLQRAHTDVQQI 170 (504)
Q Consensus 143 ~aerqeL~aqvq~L~~ELq~l~~elqql 170 (504)
..++..+-.++..+..+++++......+
T Consensus 88 ~~~l~~~~~~l~~l~~~~~~~N~~Ng~L 115 (157)
T 2fup_A 88 GAELLARGDELGELLERCQQANLRNGRI 115 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
No 477
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=70.75 E-value=29 Score=38.65 Aligned_cols=112 Identities=11% Similarity=0.026 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHH-------
Q 010679 51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK------- 123 (504)
Q Consensus 51 LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~------- 123 (504)
++-+++....+.+.+..+.++-.+-++-|..-+..+.+-++.++..-.. ++.-+....-.-.+.++-|.
T Consensus 325 ~~~R~~v~~rR~~~~L~k~~~r~hiLegl~ia~~~iDeVI~iIR~s~~~----k~~L~~~f~lse~QA~aIL~mrL~rLt 400 (716)
T 1zvu_A 325 LVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEP----KPALMSRFGLTETQAEAILELKLRHLA 400 (716)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSH----HHHHHHSTTCCTTHHHHHHTCCGGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhcCch----HHHHHHhcCCCHHHHHHHHhhHHHHhh
Q ss_pred --HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679 124 --TAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTD 166 (504)
Q Consensus 124 --ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~e 166 (504)
+.++++.|+++|+.++.+++..+.+-....+.+.+||..++++
T Consensus 401 ~le~~kl~~E~~eL~~~i~~l~~iL~~~~~l~~~i~~EL~~i~~k 445 (716)
T 1zvu_A 401 KLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQA 445 (716)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
No 478
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=70.57 E-value=45 Score=27.86 Aligned_cols=81 Identities=10% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhccchH----HHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 87 QHELQILHGQIGGMKS----ERELQMRNLTEKIAKMEAELK----TAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQ 158 (504)
Q Consensus 87 qqEL~~L~~~L~~l~a----e~E~eL~eL~eki~kLEaEL~----ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ 158 (504)
..+|...+..|.+..+ +..-+|...++++...+..+. ......+|-.++-.+|...+.....-...++.|..
T Consensus 6 ~eql~~te~Ai~~A~~aga~~~apEl~~A~dKl~~A~~Am~~~~y~~Ar~lAEqAe~DArLAeAka~~~Ka~~~~~el~~ 85 (98)
T 4fm3_A 6 LEQMRLTEQALEQAKAVGATDDVAELKLAQDKYAAAQIAMTAESYKKARLLAEQAELDARLAESKVLTQKSKDQLGELDK 85 (98)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhh
Q 010679 159 DLQRAHTDV 167 (504)
Q Consensus 159 ELq~l~~el 167 (504)
.|+.|++++
T Consensus 86 ~I~~LrqEl 94 (98)
T 4fm3_A 86 SLKRLRKQL 94 (98)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
No 479
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=70.43 E-value=70 Score=29.87 Aligned_cols=147 Identities=12% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHH
Q 010679 75 THGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAE-------PVKLEFQKSKTEAQNLVVARE 147 (504)
Q Consensus 75 qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele-------~LkaELeqLr~ELqeL~aerq 147 (504)
+++.+-..|.....-|+.++-.|.. .-.+.+.+...|..+..+|..+- .+...-.....+..----.+.
T Consensus 19 evehwmtslkevekvldsvepklts----sgtkwrvvaqhikdicsdlnqifnkedpryevvqagasaahdfdvryldih 94 (294)
T 3caz_A 19 EVEHWMTSLKEVEKVLDSVEPKLTS----SGTKWRVVAQHIKDICSDLNQIFNKEDPRYEVVQAGASAAHDFDVRYLDIH 94 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHHHHTSSCCSCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCccccC----CCcchhHHHHHHHHHHHHHHHHhcccCcchHHHHcccccccccchhhhhHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 148 ELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 226 (504)
Q Consensus 148 eL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraEL 226 (504)
..-.++..|...|++..+.++.|.....+.++.+.-.++-+-.++.+++.. .+.+++..-+.+|.+.+...++.-.+|
T Consensus 95 khgreiarllekiqkyfQ~IEtlK~ql~nf~e~RLiYDHYKlKvdELEK~~-KdSeKI~RNQsKLssAEtaYkqvcsDi 172 (294)
T 3caz_A 95 KHGREIARLLEKIQKYRQEIEEIKKEYKETDKYRERYDHYKVKLDNLEKKN-KDQERIERNQQKFKDAEAAYSSVCADL 172 (294)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHhcc-chHHHHHHhHHHhhhHHHHHHHHHHHH
No 480
>3d5k_A OPRM, outer membrane protein OPRM; channel, beta-alpha-barrel, antibiotic RES lipoprotein, palmitate, transmemb transport; 2.40A {Pseudomonas aeruginosa} PDB: 1wp1_A
Probab=70.34 E-value=97 Score=31.44 Aligned_cols=105 Identities=8% Similarity=0.012 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 010679 104 RELQMRNLTEKIAKMEAELKTAE-PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQ 182 (504)
Q Consensus 104 ~E~eL~eL~eki~kLEaEL~ele-~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrq 182 (504)
....++..+..+...+.++.... .+..++...-.++...+..+.-++..++.++..+...+...+.=.....++...+.
T Consensus 132 ~~~~~~~A~~~~~~a~~~~~~~~~~l~~~v~~ay~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~dvl~a~~ 211 (474)
T 3d5k_A 132 LRSLRDQALEQYLATEQAQRSAQTTLVASVATAYLTLKADQAQLQLTKDTLGTYQKSFDLTQRSYDVGVASALDLRQAQT 211 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHH
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHH
Q 010679 183 EYHHCRGTYEYEKKFYNDHLESLQVM 208 (504)
Q Consensus 183 ELq~LR~eLe~~kk~~~el~eqlqem 208 (504)
++..++.++...+..+......+..+
T Consensus 212 ~~~~a~~~l~~a~~~~~~a~~~L~~l 237 (474)
T 3d5k_A 212 AVEGARATLAQYTRLVAQDQNALVLL 237 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 481
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=70.00 E-value=6.6 Score=30.69 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010679 192 EYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNV 232 (504)
Q Consensus 192 e~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~~ 232 (504)
+++.+.+..-.+.+.+++..|.....+|..|+.+|.++..+
T Consensus 14 e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsV 54 (67)
T 1zxa_A 14 EDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSV 54 (67)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 482
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=69.95 E-value=59 Score=28.81 Aligned_cols=111 Identities=9% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 83 LAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR 162 (504)
Q Consensus 83 La~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~ 162 (504)
+..+.+....|...|.+ ..+++.+++...+++++ .++..+-.++..++.+++..+..-+.. ..++...++++
T Consensus 6 ~~~I~d~A~eL~~aI~e-----seeyk~yk~A~~~i~~D-~eaq~li~eF~~~Q~~~~~~q~~Gk~~--~~~e~~~el~~ 77 (151)
T 2pih_A 6 KKDIVQQARNLAKMISE-----TEEVDFFKRAEAQINEN-DKVSTIVNQIKALQKQAVNLKHYEKHE--ALKQVEAKIDA 77 (151)
T ss_dssp HHHHHHHHHHHHHHHTT-----BHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc-----CHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHcCCcc--chHHHHHHHHH
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 010679 163 AHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESL 205 (504)
Q Consensus 163 l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eql 205 (504)
+..++...+. |.++.+--+++..-|+...+.+.+-....
T Consensus 78 l~~~l~~np~----V~~y~~Ae~~l~~LL~~I~~iI~~~I~~~ 116 (151)
T 2pih_A 78 LQEELEEIPV----IQEFRDSQMEVNDLLQLVAHTISNQVTNE 116 (151)
T ss_dssp HHHHHHHSHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
No 483
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=69.83 E-value=8.4 Score=28.79 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010679 56 ASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG 99 (504)
Q Consensus 56 e~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~ 99 (504)
+..+.++.+|..-+-.|.+++..|+.......+|+.+|.+-+.+
T Consensus 7 tRse~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 7 TRSERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 484
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=69.73 E-value=28 Score=27.79 Aligned_cols=62 Identities=21% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 010679 111 LTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPA 172 (504)
Q Consensus 111 L~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~ 172 (504)
...+...-++--+..+.-+....++...+..|..+-..|..+|+.|+.++..|+.-+.+++.
T Consensus 17 ~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q~p~ 78 (78)
T 1gu4_A 17 KIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE 78 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC----
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
No 485
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=69.65 E-value=20 Score=28.42 Aligned_cols=82 Identities=9% Similarity=0.007 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------hhhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 010679 127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTD---------VQQIPALLSELESLRQEYHHCRGTYEYEKKF 197 (504)
Q Consensus 127 ~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~e---------lqql~~L~~EIeaLrqELq~LR~eLe~~kk~ 197 (504)
.++-+...++....++.....+|...++.|...+..+... .............+..-|.++...|...-..
T Consensus 2 ~i~v~~~~l~~~a~~~~~~~~~i~~~l~~l~~~v~~l~~~W~G~A~~af~~~~~~w~~~~~~~~~~L~~i~~~l~~~~~~ 81 (94)
T 3fav_B 2 EQQWNFAGIEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQNLARTISEAGQA 81 (94)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred eeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 010679 198 YNDHLESLQVM 208 (504)
Q Consensus 198 ~~el~eqlqem 208 (504)
+.........+
T Consensus 82 y~~~d~~~a~~ 92 (94)
T 3fav_B 82 MASTEGNVTGM 92 (94)
T ss_dssp -----------
T ss_pred HHHHHHHHHhc
No 486
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Probab=69.44 E-value=52 Score=27.96 Aligned_cols=64 Identities=9% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--HHH----------HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010679 105 ELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEA--QNL----------VVAREELIAKVHQLTQDLQRAHTDVQ 168 (504)
Q Consensus 105 E~eL~eL~eki~kLEaEL~ele~LkaELeqLr~EL--qeL----------~aerqeL~aqvq~L~~ELq~l~~elq 168 (504)
+.+|..|.+++.-++..|.++.-+.+|+.-..+.+ ... ....+.|..++..+.-.+.++..++.
T Consensus 23 ~~ELeSlK~EL~HfE~rl~K~rH~~~el~l~~~k~~~~~~~g~~e~~s~~~ek~~~le~k~Kk~~~kV~Kl~~dl~ 98 (109)
T 2fcw_A 23 DKELEAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEGRTKELGYTVKKHLQDLS 98 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
No 487
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*
Probab=69.38 E-value=54 Score=28.08 Aligned_cols=96 Identities=13% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHh----
Q 010679 54 KIASQHVEMQKLATENQRLAATHGTLRQELAAAQH---ELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAE---- 126 (504)
Q Consensus 54 eLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqq---EL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele---- 126 (504)
+.+....++..++...+.+..+++.+..+|..+++ +.......+.. ++.+|....+.+.++-+.|..+.
T Consensus 5 eeE~~lK~L~~veksv~~~~kkl~~~~~el~~iekGFL~kel~~eal~k----ldKrik~~~E~~MK~LE~lDsl~i~e~ 80 (114)
T 1hx1_B 5 QEEVELKKLKHLEKSVEKIADQLEELNKELTGIQQGFLPKDLQAEALCK----LDRRVKATIEQFMKILEEIDTLILPEN 80 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHT----THHHHHHHHHHHHHHHHHHTTCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHhHHHHHHH----HHHHHHHHHHHHHHHHHHhhcccCChh
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 127 --PVKLEFQKSKTEAQNLVVAREELIAKV 153 (504)
Q Consensus 127 --~LkaELeqLr~ELqeL~aerqeL~aqv 153 (504)
..+..-..+...++.+.++...|.+.+
T Consensus 81 ~~~~R~kRK~lV~~iQ~~l~~cD~l~~~i 109 (114)
T 1hx1_B 81 FKDSRLKRKGLVKKVQAFLAECDTVEQNI 109 (114)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
No 488
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=69.38 E-value=24 Score=26.53 Aligned_cols=52 Identities=19% Similarity=0.190 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 169 QIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVE 220 (504)
Q Consensus 169 ql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~Eie 220 (504)
++..++..|..+..++.+++.+++.....+.++..-.-.++.++..-.+=++
T Consensus 1 rl~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLLE 52 (59)
T 1gk6_A 1 RMKQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLLE 52 (59)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
No 489
>1pl5_A Regulatory protein SIR4; parallel coiled coil homodimer, DNA binding protein/transcription complex; 2.50A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=69.33 E-value=15 Score=31.17 Aligned_cols=72 Identities=21% Similarity=0.268 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHH
Q 010679 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK 123 (504)
Q Consensus 48 ~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ 123 (504)
....|.+|....+-|+.|..+.-+-+..+..|+-+|.-.+.-|+..+.+|.+ ++.+|..|.++--++..|++
T Consensus 69 ldekekqlavaneiirslsdevmrneiritslqgdltftkkclenarsqise----kdakinklmekdfqvnkeik 140 (142)
T 1pl5_A 69 LDEKEKQLAVANEIIRSLSDEVMRNEIRITSLQGDLTFTKKCLENARSQISE----KDAKINKLMEKDFQVNKEIK 140 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHTTTC----------
T ss_pred hhhHHHHHHHHHHHHHHhHHHHHhhheeeeeeccchhhHHHHHHHHHhhhhh----hhHHHHHHHHHhhhcccccC
No 490
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=69.28 E-value=48 Score=27.52 Aligned_cols=84 Identities=13% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 010679 131 EFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ----QIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQ 206 (504)
Q Consensus 131 ELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elq----ql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlq 206 (504)
+|+.+|.+|.++-.++-+|-+++-.+..++.+++.+.. .-.....-|+.+.......--.-+....-+..+.+...
T Consensus 6 ~L~~lR~~ID~iD~~L~~LL~~R~~~~~~v~~~K~~~~~~i~dp~RE~~vl~~~~~~a~~~~l~~~~i~~if~~ii~~s~ 85 (109)
T 1ecm_A 6 PLLALREKISALDEKLLALLAERRELAVEVGKAKLLSHRPVRDIDRERDLLERLITLGKAHHLDAHYITRLFQLIIEDSV 85 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhHhCCCCHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH
Q 010679 207 VMEKNYIT 214 (504)
Q Consensus 207 emek~L~s 214 (504)
.++..+..
T Consensus 86 ~~q~~~~~ 93 (109)
T 1ecm_A 86 LTQQALLQ 93 (109)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
No 491
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=69.06 E-value=19 Score=27.90 Aligned_cols=52 Identities=10% Similarity=-0.026 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 010679 148 ELIAKVHQLTQDLQRAHTDVQQI--PALLSELESLRQEYHHCRGTYEYEKKFYN 199 (504)
Q Consensus 148 eL~aqvq~L~~ELq~l~~elqql--~~L~~EIeaLrqELq~LR~eLe~~kk~~~ 199 (504)
.+..+..+|..++..++.++..+ .+..+....|+..++.+..+|+.+++.+.
T Consensus 3 k~~~~~~~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~ 56 (65)
T 3sja_C 3 ELSKKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQ 56 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 492
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=68.78 E-value=31 Score=27.27 Aligned_cols=53 Identities=13% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 010679 135 SKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHC 187 (504)
Q Consensus 135 Lr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~L 187 (504)
+..++++++..+..|+.+++.+..+++....+-+.+-.++..++.--..+.+|
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkL 55 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKL 55 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>1yc9_A VCEC, multidrug resistance protein; outer membrane protein, multidrug resistanc membrane protein; HET: BOG; 1.80A {Vibrio cholerae}
Probab=68.59 E-value=99 Score=30.86 Aligned_cols=106 Identities=11% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 010679 103 ERELQMRNLTEKIAKMEAELKTAE-PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLR 181 (504)
Q Consensus 103 e~E~eL~eL~eki~kLEaEL~ele-~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLr 181 (504)
.....++..+..+...+.++.... .+..++...=-++...+..+.-++..++.++..+...+...+.=.....++..++
T Consensus 117 ~~~~~~~~a~~~~~~a~~~~~~~~~~l~~~v~~ay~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~d~~~a~ 196 (442)
T 1yc9_A 117 KNRAAVVAATSELAAAEAESVAARLMISTSIANAYAELARLYANQETVHAALQVRNKTVELLEKRYANGLETLGSVSQAK 196 (442)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHH
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 010679 182 QEYHHCRGTYEYEKKFYNDHLESLQVM 208 (504)
Q Consensus 182 qELq~LR~eLe~~kk~~~el~eqlqem 208 (504)
.++..++.++...+..+.....++..+
T Consensus 197 ~~~~~a~~~l~~a~~~~~~a~~~L~~l 223 (442)
T 1yc9_A 197 AVAASVEAELLGIQESIQLQKNALAAL 223 (442)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=68.45 E-value=1e+02 Score=30.96 Aligned_cols=179 Identities=9% Similarity=0.045 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchH------HHHHHHHHHHHHHHHHHHHHH
Q 010679 50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS------ERELQMRNLTEKIAKMEAELK 123 (504)
Q Consensus 50 ~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~a------e~E~eL~eL~eki~kLEaEL~ 123 (504)
.....|...++++..++..+.+|......+..-+.++..-...+...|.++.. ..+..+.....+..+.-.++.
T Consensus 18 ~FR~~l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~~~~~~~~~d~~v~~~l~~f~~~~~ei~ 97 (385)
T 2q13_A 18 QTRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELS 97 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCC---CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hhhhhHHHHHHHHHHHHHHHH
Q 010679 124 TAEPVKLE------FQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTD----------VQQIPALLSELESLRQEYHHC 187 (504)
Q Consensus 124 ele~LkaE------LeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~e----------lqql~~L~~EIeaLrqELq~L 187 (504)
........ +..|+.=++.-.....++....+....+......+ ...+.+...++...+......
T Consensus 98 ~~~~~l~~~~~~~~~~PL~~f~~~di~~~ke~kk~fek~~~~yd~al~k~~~~~k~k~~e~~~~ea~~~l~~~rk~f~~~ 177 (385)
T 2q13_A 98 SCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKKRENDKVKYEVTEDVYTSRKKQHQT 177 (385)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHh
Q 010679 188 RGTYEYEKKFYNDHLESL------------------------QVMEKNYITMATEVEKLRAELMN 228 (504)
Q Consensus 188 R~eLe~~kk~~~el~eql------------------------qemek~L~sme~EiekLraELek 228 (504)
.-++-..-..+..-+... ++++.-+..+..++++++.+++.
T Consensus 178 ~ldy~~~l~~l~~rk~~e~le~l~~~~~a~~~ff~~g~~~~~~~~~~~~~~l~~~l~~~r~~~~~ 242 (385)
T 2q13_A 178 MMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLANIGTSVQNVRREMDS 242 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=68.40 E-value=25 Score=33.10 Aligned_cols=56 Identities=9% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 010679 132 FQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHC 187 (504)
Q Consensus 132 LeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~L 187 (504)
.++-|.-|.+...+-.+|..+|..|..+|..++.+++++..|.....-|-.-|++|
T Consensus 103 AE~RR~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l 158 (209)
T 2wvr_A 103 AEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERL 158 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=68.37 E-value=11 Score=24.39 Aligned_cols=28 Identities=29% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 54 KIASQHVEMQKLATENQRLAATHGTLRQ 81 (504)
Q Consensus 54 eLe~~~eEIq~Le~e~qrLe~qi~~Lkq 81 (504)
+|..+++||..|..++..|.-++..|++
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 497
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=68.36 E-value=42 Score=26.43 Aligned_cols=66 Identities=14% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Q 010679 51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIA 116 (504)
Q Consensus 51 LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~ 116 (504)
+...|..+..|.+.|...+..+.+++..++++-.........++..|.....-+.+.+..|.+...
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~L~~E~~LK~QAVNKLAEIMN 67 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQLLTERTLKTQAVNKLAEIMN 67 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 498
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=68.27 E-value=28 Score=28.10 Aligned_cols=82 Identities=7% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 010679 134 KSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI---------PALLSELESLRQEYHHCRGTYEYEKKFYNDHLES 204 (504)
Q Consensus 134 qLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql---------~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eq 204 (504)
+++-+...+.....++.....+|...|..++..+..| ..-......+.....++...|+.+...+...-..
T Consensus 4 ~i~v~~~~l~~~A~~~~~~~~~l~~~l~~l~~~~~~L~~~W~G~A~~af~~~~~~w~~~~~~l~~~L~~i~~~l~~~a~~ 83 (101)
T 3fav_A 4 EMKTDAATLAQEAGNFERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQELDEISTNIRQAGVQ 83 (101)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 010679 205 LQVMEKNYITM 215 (504)
Q Consensus 205 lqemek~L~sm 215 (504)
+++.+.....+
T Consensus 84 y~~~d~~~a~~ 94 (101)
T 3fav_A 84 YSRADEEQQQA 94 (101)
T ss_dssp HC---------
T ss_pred HHHHHHHHHHH
No 499
>2gtv_X CM, chorismate mutase; four-helix bundle, isomerase; HET: TSA; NMR {Methanocaldococcus jannaschii} SCOP: a.130.1.3
Probab=68.27 E-value=52 Score=27.54 Aligned_cols=88 Identities=13% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 010679 131 EFQKSKTEAQNLVVARE--------ELIAKVHQLTQDLQRAHTDVQ----QIPALLSELESLRQEYHHCRGTYEYEKKFY 198 (504)
Q Consensus 131 ELeqLr~ELqeL~aerq--------eL~aqvq~L~~ELq~l~~elq----ql~~L~~EIeaLrqELq~LR~eLe~~kk~~ 198 (504)
+|.+++.+|.++-.++- +|-+++-.+..++.+++.... .-.....-++.+......+--.-+...+-+
T Consensus 4 ~L~~lR~~ID~ID~~il~~~~~~~~~Ll~eR~~l~~~Va~~K~~~g~pi~dp~RE~~vl~~~~~~~~~~~l~~~~i~~if 83 (104)
T 2gtv_X 4 KLAEIRKKIDEIDNKILKARWPWAEKLIAERNSLAKDVAEIKNQLGIPINDPEREKYIYDRIRKLCKEHNVDENIGIKIF 83 (104)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSSSCCCCHHHHHHHHHHHHHHHHHHTSCSCCHHHHHHHHHHHHHHHHHHTSCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHCCCCCcChHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010679 199 NDHLESLQVMEKNYITMATE 218 (504)
Q Consensus 199 ~el~eqlqemek~L~sme~E 218 (504)
..+.+....++..+..-..+
T Consensus 84 ~~ii~~s~~~Q~~~l~~~~~ 103 (104)
T 2gtv_X 84 QRLIEHNKALQKQYLEETLE 103 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcC
No 500
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=68.26 E-value=32 Score=28.10 Aligned_cols=91 Identities=14% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679 149 LIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHC----RGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRA 224 (504)
Q Consensus 149 L~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~L----R~eLe~~kk~~~el~eqlqemek~L~sme~EiekLra 224 (504)
+......|..-..++.....+|..+..+|+.....|... -..-+.......++....++|...|..+...|.....
T Consensus 9 i~v~~~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L~~i~~~l~~a~~ 88 (103)
T 4i0x_B 9 FSFDLDHIEQVTSRARGFKEFVTENLDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGLSQMEEAARTAHG 88 (103)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhcccccccccCC
Q 010679 225 ELMNAPNVDRRAADG 239 (504)
Q Consensus 225 ELekle~~~~~~~~~ 239 (504)
.....+..+...+++
T Consensus 89 ~y~~~e~~~a~~f~g 103 (103)
T 4i0x_B 89 AYSEAQEANLRMARG 103 (103)
T ss_dssp CC-------------
T ss_pred HHHHHHHHHHhhcCC
Done!