Query 010682
Match_columns 504
No_of_seqs 182 out of 315
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 03:21:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010682.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010682hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2085 Serine/threonine prote 100.0 4E-154 9E-159 1175.3 39.8 415 70-486 42-456 (457)
2 PF01603 B56: Protein phosphat 100.0 2E-124 4E-129 990.5 29.5 407 72-483 1-409 (409)
3 PLN00122 serine/threonine prot 100.0 4.2E-36 9.1E-41 281.2 12.9 133 321-486 35-167 (170)
4 PLN00122 serine/threonine prot 97.7 0.00019 4.1E-09 68.2 9.5 33 57-92 35-67 (170)
5 PF01602 Adaptin_N: Adaptin N 91.5 2.6 5.6E-05 45.7 13.0 175 209-396 341-520 (526)
6 KOG1060 Vesicle coat complex A 86.1 9.5 0.00021 44.3 12.5 151 286-457 319-471 (968)
7 PF12348 CLASP_N: CLASP N term 81.4 23 0.0005 34.1 11.9 104 341-447 19-126 (228)
8 PF05918 API5: Apoptosis inhib 80.2 1.1E+02 0.0024 34.6 18.6 88 308-395 241-340 (556)
9 PF08767 CRM1_C: CRM1 C termin 74.3 1.2E+02 0.0025 31.7 15.5 74 357-447 155-228 (319)
10 PF14500 MMS19_N: Dos2-interac 72.7 57 0.0012 33.2 12.2 70 309-384 121-203 (262)
11 PF04388 Hamartin: Hamartin pr 70.6 98 0.0021 35.8 14.8 57 208-274 5-61 (668)
12 PF01602 Adaptin_N: Adaptin N 67.5 1.9E+02 0.004 31.3 18.7 242 179-447 245-486 (526)
13 KOG0213 Splicing factor 3b, su 66.9 73 0.0016 37.4 12.3 298 141-454 569-904 (1172)
14 PF12460 MMS19_C: RNAPII trans 65.6 2E+02 0.0043 30.9 17.1 183 207-395 189-389 (415)
15 KOG2137 Protein kinase [Signal 61.8 93 0.002 36.0 12.1 161 268-443 292-457 (700)
16 KOG1525 Sister chromatid cohes 61.5 4.1E+02 0.009 33.3 19.4 281 73-395 11-302 (1266)
17 smart00582 RPR domain present 59.1 15 0.00032 32.2 4.3 84 315-398 18-108 (121)
18 cd03572 ENTH_epsin_related ENT 56.5 1.1E+02 0.0023 27.9 9.4 89 349-444 21-119 (122)
19 COG5215 KAP95 Karyopherin (imp 55.7 41 0.00089 38.2 7.8 102 368-482 260-387 (858)
20 PF01417 ENTH: ENTH domain; I 55.7 41 0.00089 29.9 6.6 90 354-444 25-121 (125)
21 cd03562 CID CID (CTD-Interacti 55.1 44 0.00095 29.0 6.6 90 310-399 18-110 (114)
22 PF10508 Proteasom_PSMB: Prote 50.2 1.2E+02 0.0025 33.7 10.4 107 370-483 118-231 (503)
23 KOG1991 Nuclear transport rece 47.8 5.9E+02 0.013 30.9 19.4 271 116-446 197-493 (1010)
24 PF12348 CLASP_N: CLASP N term 46.2 2.7E+02 0.0059 26.6 14.2 191 217-413 17-217 (228)
25 PF08389 Xpo1: Exportin 1-like 43.0 74 0.0016 27.9 6.3 101 326-442 8-113 (148)
26 COG5656 SXM1 Importin, protein 41.7 6.8E+02 0.015 29.8 16.5 118 212-334 379-504 (970)
27 PTZ00429 beta-adaptin; Provisi 41.0 6.7E+02 0.015 29.6 18.5 138 245-395 402-541 (746)
28 cd03567 VHS_GGA VHS domain fam 40.5 2.9E+02 0.0062 25.5 9.8 79 317-395 26-111 (139)
29 cd07920 Pumilio Pumilio-family 40.0 4.1E+02 0.0089 26.8 15.3 70 323-394 141-211 (322)
30 PF12783 Sec7_N: Guanine nucle 39.8 2.9E+02 0.0062 25.5 10.0 114 344-461 37-162 (168)
31 PF04826 Arm_2: Armadillo-like 38.5 4.4E+02 0.0095 26.7 14.6 57 201-258 6-64 (254)
32 PF07539 DRIM: Down-regulated 37.9 1.5E+02 0.0033 27.4 7.6 20 221-240 83-103 (141)
33 KOG2175 Protein predicted to b 36.1 4.7E+02 0.01 29.1 12.0 40 415-455 214-253 (458)
34 PF08167 RIX1: rRNA processing 35.1 1.6E+02 0.0035 27.5 7.5 50 207-256 67-117 (165)
35 PF12783 Sec7_N: Guanine nucle 34.8 1.4E+02 0.003 27.7 6.9 79 245-326 70-150 (168)
36 PF03378 CAS_CSE1: CAS/CSE pro 34.4 95 0.0021 34.0 6.5 165 117-301 117-304 (435)
37 PF14676 FANCI_S2: FANCI solen 32.8 2.7E+02 0.0058 26.3 8.5 25 279-303 102-126 (158)
38 KOG4407 Predicted Rho GTPase-a 32.6 1.8E+02 0.0039 36.3 8.6 113 76-234 1162-1281(1973)
39 PF04499 SAPS: SIT4 phosphatas 32.0 4.2E+02 0.0091 29.4 11.1 100 180-279 33-149 (475)
40 PF12717 Cnd1: non-SMC mitotic 30.7 3.8E+02 0.0081 25.1 9.3 83 364-452 18-101 (178)
41 cd03571 ENTH_epsin ENTH domain 30.3 2.6E+02 0.0056 25.3 7.6 84 354-444 23-118 (123)
42 KOG1992 Nuclear export recepto 30.1 1E+03 0.023 28.6 15.4 301 134-445 447-838 (960)
43 cd03561 VHS VHS domain family; 29.9 4.1E+02 0.0089 23.8 9.5 81 315-395 23-107 (133)
44 PF12755 Vac14_Fab1_bd: Vacuol 29.8 2.5E+02 0.0053 24.2 7.1 73 365-443 21-96 (97)
45 cd00020 ARM Armadillo/beta-cat 29.3 1.7E+02 0.0036 24.1 6.0 42 197-238 39-80 (120)
46 cd03568 VHS_STAM VHS domain fa 28.2 4.8E+02 0.01 24.1 9.9 80 317-396 25-106 (144)
47 KOG1967 DNA repair/transcripti 27.7 4.8E+02 0.01 31.5 10.9 143 330-478 868-1025(1030)
48 cd07920 Pumilio Pumilio-family 26.2 6.8E+02 0.015 25.2 14.7 23 204-229 92-114 (322)
49 KOG1824 TATA-binding protein-i 25.9 8.1E+02 0.018 30.0 12.2 128 330-459 477-618 (1233)
50 KOG2171 Karyopherin (importin) 25.7 6.9E+02 0.015 30.7 11.9 283 115-461 751-1065(1075)
51 cd08324 CARD_NOD1_CARD4 Caspas 25.7 64 0.0014 27.6 2.6 38 208-245 47-84 (85)
52 KOG2056 Equilibrative nucleosi 25.7 3.2E+02 0.007 29.1 8.4 89 353-443 42-137 (336)
53 cd03569 VHS_Hrs_Vps27p VHS dom 25.4 5.3E+02 0.012 23.6 9.7 79 317-395 29-109 (142)
54 PF15611 EH_Signature: EH_Sign 25.3 6.4E+02 0.014 26.4 10.8 92 363-481 187-280 (389)
55 KOG4553 Uncharacterized conser 25.2 1.2E+03 0.025 29.1 13.3 166 131-322 328-528 (1398)
56 PF12333 Ipi1_N: Rix1 complex 24.9 1.5E+02 0.0032 25.7 4.9 36 413-449 10-45 (102)
57 PF12717 Cnd1: non-SMC mitotic 24.8 5.8E+02 0.013 23.9 11.3 49 345-393 123-172 (178)
58 PF12726 SEN1_N: SEN1 N termin 24.7 5.2E+02 0.011 30.1 10.7 103 181-284 496-610 (727)
59 PF12719 Cnd3: Nuclear condens 24.3 6.9E+02 0.015 25.4 10.5 174 270-447 4-210 (298)
60 KOG4413 26S proteasome regulat 24.2 6E+02 0.013 27.4 9.9 107 346-455 99-211 (524)
61 PF08578 DUF1765: Protein of u 23.9 4.1E+02 0.0089 23.7 7.8 105 330-438 5-120 (126)
62 smart00324 RhoGAP GTPase-activ 23.9 5.3E+02 0.012 23.5 8.9 88 180-277 57-146 (174)
63 PF12290 DUF3802: Protein of u 23.8 1.9E+02 0.004 26.1 5.3 52 308-359 39-105 (113)
64 PF09059 TyeA: TyeA; InterPro 23.6 1.1E+02 0.0023 26.4 3.6 47 320-366 15-61 (87)
65 PF06757 Ins_allergen_rp: Inse 23.0 5.1E+02 0.011 24.5 8.7 56 349-406 103-164 (179)
66 KOG1241 Karyopherin (importin) 22.6 2E+02 0.0042 33.9 6.5 72 370-443 258-354 (859)
67 cd00020 ARM Armadillo/beta-cat 22.5 3.3E+02 0.0071 22.3 6.6 65 371-442 49-118 (120)
68 PF04388 Hamartin: Hamartin pr 22.2 6.7E+02 0.015 29.1 10.8 106 329-452 39-148 (668)
69 PF14724 mit_SMPDase: Mitochon 21.8 5.9E+02 0.013 30.2 10.2 114 328-446 371-529 (765)
70 KOG1058 Vesicle coat complex C 21.2 3.6E+02 0.0079 31.9 8.2 74 286-359 351-429 (948)
71 KOG2062 26S proteasome regulat 20.4 1.3E+03 0.028 27.5 12.3 100 227-336 130-238 (929)
72 KOG2188 Predicted RNA-binding 20.2 1.4E+03 0.03 26.6 12.6 20 213-232 321-343 (650)
No 1
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=100.00 E-value=4.1e-154 Score=1175.32 Aligned_cols=415 Identities=56% Similarity=0.978 Sum_probs=410.9
Q ss_pred cCCCCCCCCCChHHhHHHHHHHHhcCcccccccCCCcCchhHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhHhhcc
Q 010682 70 VEPHLSFKDVSNTQKQNLFVSKLNLCCEVSDFSDSDKVTAEQDLKRQTLIELADFVSSGSAKFTEPAISGMCKMCSLNLF 149 (504)
Q Consensus 70 ~~~lp~l~dv~~~e~~~lf~~Kl~~C~~i~DF~dp~~d~~~Ke~K~~tL~EL~~~v~~~~~~l~e~~~~~i~~Mi~~NIF 149 (504)
+++||+|+|||++|+++||++|+++||++|||+||.+|.++||+||+||+||+||+.++++++++.+|+++++|+++|||
T Consensus 42 l~~LP~~~dv~~se~~~Lf~~Kl~~Cc~~FDF~Dp~~~~~~keikR~tL~eLvd~v~~~~~kite~~~~~vv~m~s~nif 121 (457)
T KOG2085|consen 42 LEPLPSLKDVPSSEQKELFIKKLEQCCVLFDFNDPLKDLKGKEIKRQTLLELVDDVISRRGKISEEVYSEVVKMFSVNIF 121 (457)
T ss_pred ceeCCccCcCChhHhHHHHHHHHHhhheeeeccChhhhhccchhHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhh
Confidence 55999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHhcCCCChHHhhhcCCHHHHHHHHhhcCCCChHHHHHHHH
Q 010682 150 RVFPPKCRSNGTGGETEDEEPMFDPAWSHLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKT 229 (504)
Q Consensus 150 R~lP~~~~~~~~~~d~eedep~~e~sWpHLqlVYeillrfv~s~~~d~~~~k~~id~~Fi~~Ll~lfdSeDprERd~Lkt 229 (504)
|+|||..++++ +|+|||||++|++|||||+||++|+||++||++|+++||+||||+||++||++||||||||||+|||
T Consensus 122 R~lpp~~n~~~--~d~eedEp~le~awphLqlvye~~Lrf~~sp~~d~~vaK~yid~~FvlkLLdLFdSEDpRERe~LKT 199 (457)
T KOG2085|consen 122 RTLPPSVNPTG--FDYEEDEPVLEPAWPHLQLVYEFLLRFLESPDFDPSVAKKYIDQKFVLKLLDLFDSEDPREREFLKT 199 (457)
T ss_pred ccCCcccCCCc--CCccccCcccCCCchHHHHHHHHHHHHHhCcccCHHHHHHHhhHHHHHHHHHHhcCCChHHHHHHHH
Confidence 99999999976 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhcchHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhccCCCCcccch
Q 010682 230 VLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYH 309 (504)
Q Consensus 230 iLhrIY~Kf~~~R~fIrk~i~nif~~fi~e~e~hnGIaELLeIlgSIIngfa~PLKeehk~Fl~~vLlPLhk~~~~~~y~ 309 (504)
+||||||||+++|+|||++|||+||+|||||++|||||||||||||||||||+|||||||+||.|||||||++++++.||
T Consensus 200 ~LhrIygKfl~~r~firk~iNNif~~FIyEte~hnGIaELLEIlgSiIngfAlPlKEEhkiFL~rvLipLhk~k~l~~yh 279 (457)
T KOG2085|consen 200 ILHRIYGKFLVHRPFIRKSINNIFLRFIYETERHNGIAELLEILGSIINGFALPLKEEHKLFLVRVLIPLHKPKSLSLYH 279 (457)
T ss_pred HHHHHHHHHhhhHHHHHHhhcchhhhhcccccccCCHHHHHHHHHHhcCcccCcchhHHHHHHHHhhhccccCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHH
Q 010682 310 QQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAE 389 (504)
Q Consensus 310 ~qL~~ci~qF~~KDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeiLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAE 389 (504)
+||+|||+||++|||+|++.||+||+||||+|||+||||||+||||||+.++|.+|++|++|||+|||+|++|+||||||
T Consensus 280 ~QLaYcivQfveKd~kl~~~VIrglLK~WP~tnS~KEVmFL~ElEEILe~iep~eFqk~~~PLf~qia~c~sS~HFQVAE 359 (457)
T KOG2085|consen 280 KQLAYCIVQFVEKDPKLTETVIRGLLKYWPKTNSSKEVMFLNELEEILEVIEPSEFQKIMVPLFRQIARCVSSPHFQVAE 359 (457)
T ss_pred cccceeeeeeeccCccccHHHHHHHHHhcCCCCCcceeeeHhhHHHHHHhcCHHHHHHHhHHHHHHHHHHcCChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcchhHHHHhhhccccccccchHHHHHhhhhcccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhhhHHHHHH
Q 010682 390 RAHLLWNNEHILNLVTHNRQVIIPLVFPALERNTQNHWNQAVLNLTQNVRKILCEMDEELVQACKRKLEEENSTLSVAAE 469 (504)
Q Consensus 390 rAL~~w~N~~i~~li~~n~~~I~Pii~paL~~~s~~HWn~~Vr~la~~vlk~l~e~D~~lf~~c~~~~~~~~~~~~~~~~ 469 (504)
|||++|||+||+++|++|+++|+|||||+||+++++|||++|+++++||+|++||||++||++|+++|++++.++++.++
T Consensus 360 raL~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~sk~hWN~~i~~l~~nvlk~f~emd~~LFeec~~~y~~~~~k~~~~~~ 439 (457)
T KOG2085|consen 360 RALYLWNNEYIRSLISQNAEVILPIVFPALYRNSKSHWNQAIHNLILNVLKTFMEMDPKLFEECLALYKEDRWKEKETEE 439 (457)
T ss_pred HHHHHHhhHHHHHHHHhccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCC
Q 010682 470 RRKLTWERLESAASFQP 486 (504)
Q Consensus 470 ~r~~~W~~l~~~A~~~~ 486 (504)
+|++.|++||++|+.++
T Consensus 440 ~re~~W~~le~~~~~~~ 456 (457)
T KOG2085|consen 440 KREETWKRLEELAAENP 456 (457)
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 99999999999998753
No 2
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=100.00 E-value=1.8e-124 Score=990.48 Aligned_cols=407 Identities=55% Similarity=0.961 Sum_probs=360.5
Q ss_pred CCCCCCCCChHHhHHHHHHHHhcCcccccccCCCcCchhHHHHHHHHHHHHHHhhcCC--CCCChHhHHHHHHHhHhhcc
Q 010682 72 PHLSFKDVSNTQKQNLFVSKLNLCCEVSDFSDSDKVTAEQDLKRQTLIELADFVSSGS--AKFTEPAISGMCKMCSLNLF 149 (504)
Q Consensus 72 ~lp~l~dv~~~e~~~lf~~Kl~~C~~i~DF~dp~~d~~~Ke~K~~tL~EL~~~v~~~~--~~l~e~~~~~i~~Mi~~NIF 149 (504)
|||+|+||+++++++||++||++||++|||+||.+|.++||+||+||+||++|++++. +.++|++++++++||++|||
T Consensus 1 ~lP~l~dv~~~e~~~lf~~Kl~~C~~ifDF~d~~~d~~~Ke~K~~~L~el~~~v~~~~~~~~l~e~~~~~i~~Mi~~Nif 80 (409)
T PF01603_consen 1 PLPSLPDVPPPERQELFLKKLQQCCVIFDFSDPSSDLKEKEIKRQTLNELVDYVSNSRIQGILTEPVYPEIFNMISANIF 80 (409)
T ss_dssp ------SS-SSSCSCHTTHHHHHHHHHSTTSSSSSSHHHHHSHHHHHHHHHHHHCSSS--SSS-TTSHHHHHHHHHHHH-
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHhCCEeeCCCCccchHHHHHHHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHhcc
Confidence 6999999999999999999999999999999999999999999999999999999987 99999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHhcCCCChHHhhhcCCHHHHHHHHhhcCCCChHHHHHHHH
Q 010682 150 RVFPPKCRSNGTGGETEDEEPMFDPAWSHLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKT 229 (504)
Q Consensus 150 R~lP~~~~~~~~~~d~eedep~~e~sWpHLqlVYeillrfv~s~~~d~~~~k~~id~~Fi~~Ll~lfdSeDprERd~Lkt 229 (504)
||+||.++.. +|+|||+++.||+|||||+||++|++|++++++++ +++|||++|+.+|+++|+|||||||++||+
T Consensus 81 R~lP~~~~~~---~~~~~d~~~~e~~WpHL~~vY~il~~~i~~~~~~~--~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~ 155 (409)
T PF01603_consen 81 RPLPPIPNPS---FDPDDDEPFLEPSWPHLQLVYEILLRFIESPPFDP--AKKYIDQKFIKKLLELFDSPDPRERDYLKT 155 (409)
T ss_dssp S-----SS-----S-GGG------TTHHHHHHHHHHHHHHHTSTT--C--CTTTS-HHHHHHHHHTTTSSTHHHHHHHHH
T ss_pred CCCCCccccc---CCccccccccccccHhHHHHHHHHHHHHHCccccH--HHHHcCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9999998874 78999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHhhhhhcchHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhccCCCCcccch
Q 010682 230 VLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYH 309 (504)
Q Consensus 230 iLhrIY~Kf~~~R~fIrk~i~nif~~fi~e~e~hnGIaELLeIlgSIIngfa~PLKeehk~Fl~~vLlPLhk~~~~~~y~ 309 (504)
+||||||||+++|++||++|+++|++|+||+++|+||+|||||+|||||||++|||+||+.|+.++|+|||++++++.||
T Consensus 156 ~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~ 235 (409)
T PF01603_consen 156 ILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYH 235 (409)
T ss_dssp HHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHH
Q 010682 310 QQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAE 389 (504)
Q Consensus 310 ~qL~~ci~qF~~KDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeiLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAE 389 (504)
+||+||+++|++|||+|+..+++||+||||+||++|||+||+|+++||+.+++++|++++.++|++||+|++|+||||||
T Consensus 236 ~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAE 315 (409)
T PF01603_consen 236 QQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAE 315 (409)
T ss_dssp HHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcchhHHHHhhhccccccccchHHHHHhhhhcccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhhhHHHHHH
Q 010682 390 RAHLLWNNEHILNLVTHNRQVIIPLVFPALERNTQNHWNQAVLNLTQNVRKILCEMDEELVQACKRKLEEENSTLSVAAE 469 (504)
Q Consensus 390 rAL~~w~N~~i~~li~~n~~~I~Pii~paL~~~s~~HWn~~Vr~la~~vlk~l~e~D~~lf~~c~~~~~~~~~~~~~~~~ 469 (504)
|||++|+|+++++++.+|++.|+|+|+|+|++++++|||++||++|.+|+++|++|||++|++|+++|++++++++++++
T Consensus 316 rAl~~w~n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~~~~~~~~~~~~~~~~~~ 395 (409)
T PF01603_consen 316 RALYFWNNEYFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDKCAQKYKEKEQKEKAREK 395 (409)
T ss_dssp HHHGGGGSHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHSSH
T ss_pred HHHHHHCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 010682 470 RRKLTWERLESAAS 483 (504)
Q Consensus 470 ~r~~~W~~l~~~A~ 483 (504)
+|+++|++|+++|+
T Consensus 396 ~r~~~W~~i~~~A~ 409 (409)
T PF01603_consen 396 KRKKKWKKIEEAAK 409 (409)
T ss_dssp HHHHHHTT-S----
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999999985
No 3
>PLN00122 serine/threonine protein phosphatase 2A; Provisional
Probab=100.00 E-value=4.2e-36 Score=281.24 Aligned_cols=133 Identities=49% Similarity=0.833 Sum_probs=129.8
Q ss_pred hcCCCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcchhH
Q 010682 321 DKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHI 400 (504)
Q Consensus 321 ~KDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeiLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i 400 (504)
...+.++...+++|.+|||++++.||.+||++| ||||||++|||++|
T Consensus 35 ~~~~~~~~~~~e~l~~~~~v~~s~k~~lfl~kl---------------------------------VAERAL~lWnNe~i 81 (170)
T PLN00122 35 AVNPASVVAGYEPLPSFRDVPNSEKQNLFVRKL---------------------------------VAERALFLWNNDHI 81 (170)
T ss_pred ccCCCccccccccccCCCCCCchHHHHHHHHHH---------------------------------HHHHHHHHHccHHH
Confidence 467889999999999999999999999999999 99999999999999
Q ss_pred HHHhhhccccccccchHHHHHhhhhcccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 010682 401 LNLVTHNRQVIIPLVFPALERNTQNHWNQAVLNLTQNVRKILCEMDEELVQACKRKLEEENSTLSVAAERRKLTWERLES 480 (504)
Q Consensus 401 ~~li~~n~~~I~Pii~paL~~~s~~HWn~~Vr~la~~vlk~l~e~D~~lf~~c~~~~~~~~~~~~~~~~~r~~~W~~l~~ 480 (504)
+++|.+|+.+|+|||||+||+++++|||++|++++++|+||||||||++|++|+++|+++++++++.+++|+++|++|++
T Consensus 82 ~~LI~~N~~~IlPIifpaL~~ns~~HWN~~V~~lt~nvlK~f~emD~~LF~ec~~~~ke~~~~~~~~~~~r~~~W~~le~ 161 (170)
T PLN00122 82 VNLIAQNRQVILPIIFPALEKNTRGHWNQAVHGLTLNVRKMFSEMDPELFEECLRKFEEDEAKAKEVEEKREATWKRLEE 161 (170)
T ss_pred HHHHHHhhhhhHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCC
Q 010682 481 AASFQP 486 (504)
Q Consensus 481 ~A~~~~ 486 (504)
.|++++
T Consensus 162 ~A~~~~ 167 (170)
T PLN00122 162 AAAAKA 167 (170)
T ss_pred HHHhcc
Confidence 999876
No 4
>PLN00122 serine/threonine protein phosphatase 2A; Provisional
Probab=97.72 E-value=0.00019 Score=68.17 Aligned_cols=33 Identities=64% Similarity=0.926 Sum_probs=27.9
Q ss_pred CCCCccccccccccCCCCCCCCCChHHhHHHHHHHH
Q 010682 57 AVFPSSIMAGVEAVEPHLSFKDVSNTQKQNLFVSKL 92 (504)
Q Consensus 57 ~~~~~~~~~~~~~~~~lp~l~dv~~~e~~~lf~~Kl 92 (504)
...+...+.++| +||+|+|||++++++||++||
T Consensus 35 ~~~~~~~~~~~e---~l~~~~~v~~s~k~~lfl~kl 67 (170)
T PLN00122 35 AVNPASVVAGYE---PLPSFRDVPNSEKQNLFVRKL 67 (170)
T ss_pred ccCCCccccccc---cccCCCCCCchHHHHHHHHHH
Confidence 444545566777 999999999999999999999
No 5
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=91.52 E-value=2.6 Score=45.74 Aligned_cols=175 Identities=15% Similarity=0.215 Sum_probs=109.5
Q ss_pred HHHHHhhc-CCCChHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhccCCCchHH
Q 010682 209 IVRLLDLF-DSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEE 287 (504)
Q Consensus 209 i~~Ll~lf-dSeDprERd~LktiLhrIY~Kf~~~R~fIrk~i~nif~~fi~e~e~hnGIaELLeIlgSIIngfa~PLKee 287 (504)
+..|+..+ +..|+.-|..+-..+..+-.++...-.+....+.+++ .... ..-..|+...+..++... ..+++.
T Consensus 341 l~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll----~~~~-~~~~~~~~~~i~~ll~~~-~~~~~~ 414 (526)
T PF01602_consen 341 LDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLL----EISG-DYVSNEIINVIRDLLSNN-PELREK 414 (526)
T ss_dssp HHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHH----HCTG-GGCHCHHHHHHHHHHHHS-TTTHHH
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhh----hhcc-ccccchHHHHHHHHhhcC-hhhhHH
Confidence 34444555 4556666666666666666666554444443333333 2221 222556666666676553 122222
Q ss_pred HHHHHHHHHhhccCCCCcccchhhHHHHHHHHHhcCCC--cHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHhhCChHHH
Q 010682 288 HKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPK--LATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEF 365 (504)
Q Consensus 288 hk~Fl~~vLlPLhk~~~~~~y~~qL~~ci~qF~~KDp~--La~~vi~~LLk~WP~tns~KEvlFL~eleeiLe~~~~~~f 365 (504)
....|+-+...-.....-.-..+|+..|.+..+. .+..+++.+...|...+..-+...|..+..+....+.++.
T Consensus 415 ----~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~ 490 (526)
T PF01602_consen 415 ----ILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEV 490 (526)
T ss_dssp ----HHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTH
T ss_pred ----HHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhh
Confidence 2333344433333344567788999999887777 8999999999999988887788888888888877665444
Q ss_pred HHHHHHHHHHHHHhhC--CCcHHHHHHHHHhhc
Q 010682 366 QKIMVPLFRRIGCCLN--SSHYQVAERAHLLWN 396 (504)
Q Consensus 366 ~~i~~~lF~~ia~cl~--S~hfqVAErAL~~w~ 396 (504)
.+ .+...+..+.. |.++.|-+||.++|.
T Consensus 491 ~~---~i~~~~~~~~~~~s~~~evr~Ra~~y~~ 520 (526)
T PF01602_consen 491 QN---EILQFLLSLATEDSSDPEVRDRAREYLR 520 (526)
T ss_dssp HH---HHHHHHHCHHHHS-SSHHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 33 45556666667 999999999999884
No 6
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.08 E-value=9.5 Score=44.32 Aligned_cols=151 Identities=16% Similarity=0.168 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHhhccCCCCcccchhhHHHHHHHHHhcCCCcHHHHHHHhhhhCCCCCChhHhHHH--HHHHHHHhhCChH
Q 010682 286 EEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFI--SELEEVLEMTSMA 363 (504)
Q Consensus 286 eehk~Fl~~vLlPLhk~~~~~~y~~qL~~ci~qF~~KDp~La~~vi~~LLk~WP~tns~KEvlFL--~eleeiLe~~~~~ 363 (504)
+.+++ .+.|+.|...+.-..| -+..||-++..|+|+|..+.++ +|+=.+.-+-++..| +.+..++ +..
T Consensus 319 ~~~~i--~kaLvrLLrs~~~vqy--vvL~nIa~~s~~~~~lF~P~lK---sFfv~ssDp~~vk~lKleiLs~La---~es 388 (968)
T KOG1060|consen 319 QVTKI--AKALVRLLRSNREVQY--VVLQNIATISIKRPTLFEPHLK---SFFVRSSDPTQVKILKLEILSNLA---NES 388 (968)
T ss_pred HHHHH--HHHHHHHHhcCCcchh--hhHHHHHHHHhcchhhhhhhhh---ceEeecCCHHHHHHHHHHHHHHHh---hhc
Confidence 44443 8999999998887777 5778899999999999988765 444555555555443 3333332 222
Q ss_pred HHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcchhHHHHhhhccccccccchHHHHHhhhhcccHHHHHHHHHHHHHHH
Q 010682 364 EFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTHNRQVIIPLVFPALERNTQNHWNQAVLNLTQNVRKILC 443 (504)
Q Consensus 364 ~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i~~li~~n~~~I~Pii~paL~~~s~~HWn~~Vr~la~~vlk~l~ 443 (504)
. ...|++-+-.-+.|+|++||-.|..-.. ....+...+-+-.+..|..-.++| +..|..-+-.|+++|.
T Consensus 389 n----i~~ILrE~q~YI~s~d~~faa~aV~AiG------rCA~~~~sv~~tCL~gLv~Llssh-de~Vv~eaV~vIk~Ll 457 (968)
T KOG1060|consen 389 N----ISEILRELQTYIKSSDRSFAAAAVKAIG------RCASRIGSVTDTCLNGLVQLLSSH-DELVVAEAVVVIKRLL 457 (968)
T ss_pred c----HHHHHHHHHHHHhcCchhHHHHHHHHHH------HHHHhhCchhhHHHHHHHHHHhcc-cchhHHHHHHHHHHHH
Confidence 2 2357777888889999998888765442 244445555566677788888888 9999999999999999
Q ss_pred HhCHHHHHHHHHHH
Q 010682 444 EMDEELVQACKRKL 457 (504)
Q Consensus 444 e~D~~lf~~c~~~~ 457 (504)
.+||.--.+...+.
T Consensus 458 q~~p~~h~~ii~~L 471 (968)
T KOG1060|consen 458 QKDPAEHLEILFQL 471 (968)
T ss_pred hhChHHHHHHHHHH
Confidence 99998777666543
No 7
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=81.40 E-value=23 Score=34.10 Aligned_cols=104 Identities=12% Similarity=0.164 Sum_probs=66.0
Q ss_pred CCChhHhHHHHHHHHHHhhC----ChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcchhHHHHhhhccccccccch
Q 010682 341 TNSQKELMFISELEEVLEMT----SMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTHNRQVIIPLVF 416 (504)
Q Consensus 341 tns~KEvlFL~eleeiLe~~----~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i~~li~~n~~~I~Pii~ 416 (504)
.+=.+.+--|..|..++..- .+..|...+..+...|..+++|.+.+|+-.|+.++.. +.......-...++.++
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~--l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSD--LARQLGSHFEPYADILL 96 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHH--HHHHHGGGGHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHH--HHHHHhHhHHHHHHHHH
Confidence 34456677788888887654 2344444555666799999999999999999988843 44444555555567788
Q ss_pred HHHHHhhhhcccHHHHHHHHHHHHHHHHhCH
Q 010682 417 PALERNTQNHWNQAVLNLTQNVRKILCEMDE 447 (504)
Q Consensus 417 paL~~~s~~HWn~~Vr~la~~vlk~l~e~D~ 447 (504)
|.|.+..... ++.|+..|.+++..+.+.-+
T Consensus 97 ~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~ 126 (228)
T PF12348_consen 97 PPLLKKLGDS-KKFIREAANNALDAIIESCS 126 (228)
T ss_dssp HHHHHGGG----HHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHccc-cHHHHHHHHHHHHHHHHHCC
Confidence 8887665443 78999999999999988766
No 8
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=80.19 E-value=1.1e+02 Score=34.64 Aligned_cols=88 Identities=11% Similarity=0.206 Sum_probs=52.3
Q ss_pred chhhHHHHHHH---HHhcCCCcHH---HHHHHhhhhCCCCCChhHhHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhh-
Q 010682 308 YHQQLTYCVVQ---FIDKDPKLAT---NAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCL- 380 (504)
Q Consensus 308 y~~qL~~ci~q---F~~KDp~La~---~vi~~LLk~WP~tns~KEvlFL~eleeiLe~~~~~~f~~i~~~lF~~ia~cl- 380 (504)
.-..+.+|+.+ |+.+...-+. .+.+.++-.|=......++-+|..+.|+...+.+.+-..++..+|..|-..+
T Consensus 241 ~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ymP 320 (556)
T PF05918_consen 241 SIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKKYMP 320 (556)
T ss_dssp HHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----THHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHhCC
Confidence 34567888887 6666655444 3444444444445558899999999999999987778888899999986544
Q ss_pred -----CCCcHHHHHHHHHhh
Q 010682 381 -----NSSHYQVAERAHLLW 395 (504)
Q Consensus 381 -----~S~hfqVAErAL~~w 395 (504)
.+.+|-.+|..|+.+
T Consensus 321 ~~~~~~~l~fs~vEcLL~af 340 (556)
T PF05918_consen 321 SKKTEPKLQFSYVECLLYAF 340 (556)
T ss_dssp ---------HHHHHHHHHHH
T ss_pred CCCCCCcccchHhhHHHHHH
Confidence 345677778777665
No 9
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=74.32 E-value=1.2e+02 Score=31.74 Aligned_cols=74 Identities=14% Similarity=0.209 Sum_probs=45.4
Q ss_pred HhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcchhHHHHhhhccccccccchHHHHHhhhhcccHHHHHHHH
Q 010682 357 LEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTHNRQVIIPLVFPALERNTQNHWNQAVLNLTQ 436 (504)
Q Consensus 357 Le~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i~~li~~n~~~I~Pii~paL~~~s~~HWn~~Vr~la~ 436 (504)
+-.++++.|.. +..-+..++.+++..|++.+|....+ ++..... .=...+...+.+-...+-.
T Consensus 155 l~~lp~~~f~~----~idsi~wg~kh~~~~I~~~~L~~l~~-----ll~~~~~--------~~~~~~~~F~~~y~~~il~ 217 (319)
T PF08767_consen 155 LLQLPPEQFKL----VIDSIVWGFKHTNREISETGLNILLE-----LLNNVSK--------TNPEFANQFYQQYYLDILQ 217 (319)
T ss_dssp HHHS-HHHHHH----HHHHHHHHHTSSSHHHHHHHHHHHHH-----HHHHHHH---------SHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHH----HHHHHHHHhCCCcHHHHHHHHHHHHH-----HHHHHHh--------cCHHHHHHHHHHHHHHHHH
Confidence 34478888865 45667888999999999999987742 2222222 0012334555555666666
Q ss_pred HHHHHHHHhCH
Q 010682 437 NVRKILCEMDE 447 (504)
Q Consensus 437 ~vlk~l~e~D~ 447 (504)
.++.++.|.+.
T Consensus 218 ~if~vltD~~H 228 (319)
T PF08767_consen 218 DIFSVLTDSDH 228 (319)
T ss_dssp HHHHHHHSTT-
T ss_pred HHHHHHHCccc
Confidence 77777766664
No 10
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=72.65 E-value=57 Score=33.19 Aligned_cols=70 Identities=26% Similarity=0.432 Sum_probs=44.2
Q ss_pred hhhHHHHHHHHH--hcCCC---cHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHhhCChHHHH--------HHHHHHHHH
Q 010682 309 HQQLTYCVVQFI--DKDPK---LATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQ--------KIMVPLFRR 375 (504)
Q Consensus 309 ~~qL~~ci~qF~--~KDp~---La~~vi~~LLk~WP~tns~KEvlFL~eleeiLe~~~~~~f~--------~i~~~lF~~ 375 (504)
...+.+.+++.+ ||||. ++..+++.+++.||. . -|..++-+++..-=|..|. --...|=..
T Consensus 121 ~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~-~-----~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~ 194 (262)
T PF14500_consen 121 GDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI-S-----EFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRA 194 (262)
T ss_pred hhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc-c-----hhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHH
Confidence 345666666766 79998 566888999999995 2 2455555555421122221 123467778
Q ss_pred HHHhhCCCc
Q 010682 376 IGCCLNSSH 384 (504)
Q Consensus 376 ia~cl~S~h 384 (504)
+..|+.|.+
T Consensus 195 L~~cl~s~~ 203 (262)
T PF14500_consen 195 LRNCLSSTP 203 (262)
T ss_pred HHHHhcCcH
Confidence 888888755
No 11
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=70.58 E-value=98 Score=35.82 Aligned_cols=57 Identities=21% Similarity=0.348 Sum_probs=40.0
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHhhhcccCCcChHHHHHHHH
Q 010682 208 FIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFG 274 (504)
Q Consensus 208 Fi~~Ll~lfdSeDprERd~LktiLhrIY~Kf~~~R~fIrk~i~nif~~fi~e~e~hnGIaELLeIlg 274 (504)
-|.+|+.+++|.|..+.+.+|..+++.+.. +.-+++ -|.+..|..+ .|-.-.++||.
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~--~~~~~l----~~~l~~y~~~----t~s~~~~~il~ 61 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNS--DREPWL----VNGLVDYYLS----TNSQRALEILV 61 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhc--cchHHH----HHHHHHHHhh----cCcHHHHHHHH
Confidence 478899999999999999999999987754 222333 3445555544 34445677665
No 12
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=67.52 E-value=1.9e+02 Score=31.34 Aligned_cols=242 Identities=15% Similarity=0.117 Sum_probs=125.3
Q ss_pred hHHHHHHHHHHHhcCCCChHHhhhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHhhh
Q 010682 179 LQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVF 258 (504)
Q Consensus 179 LqlVYeillrfv~s~~~d~~~~k~~id~~Fi~~Ll~lfdSeDprERd~LktiLhrIY~Kf~~~R~fIrk~i~nif~~fi~ 258 (504)
-.++|+....++.-++.++ .-...+..|+.++.+.|+.=|-..-..|+.|-... .+.+...-..+ .++.
T Consensus 245 ~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~---~~~v~~~~~~~--~~l~ 313 (526)
T PF01602_consen 245 PSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN---PPAVFNQSLIL--FFLL 313 (526)
T ss_dssp HHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC---HHHHGTHHHHH--HHHH
T ss_pred cHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc---chhhhhhhhhh--heec
Confidence 3567777766665333221 23456778889999999988877777777665443 23333111111 1222
Q ss_pred cccCCcChHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhccCCCCcccchhhHHHHHHHHHhcCCCcHHHHHHHhhhhC
Q 010682 259 ETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYW 338 (504)
Q Consensus 259 e~e~hnGIaELLeIlgSIIngfa~PLKeehk~Fl~~vLlPLhk~~~~~~y~~qL~~ci~qF~~KDp~La~~vi~~LLk~W 338 (504)
..+...=-...|+++..+.+- +...-....|+.-.+...-..|...+...+...+++.+.-..++++.+++.=
T Consensus 314 ~~~d~~Ir~~~l~lL~~l~~~-------~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll 386 (526)
T PF01602_consen 314 YDDDPSIRKKALDLLYKLANE-------SNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLL 386 (526)
T ss_dssp CSSSHHHHHHHHHHHHHH--H-------HHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHhhcccc-------cchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhh
Confidence 111211123447777766642 2222233333333322222347888888888888899999999988888877
Q ss_pred CCCCChhHhHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcchhHHHHhhhccccccccchHH
Q 010682 339 PVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTHNRQVIIPLVFPA 418 (504)
Q Consensus 339 P~tns~KEvlFL~eleeiLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i~~li~~n~~~I~Pii~pa 418 (504)
-..+..-.--.+..+..++... |+....+...+++.+.. -.+-. + ++..+|-=-.+...+.. .. ..+.++..
T Consensus 387 ~~~~~~~~~~~~~~i~~ll~~~-~~~~~~~l~~L~~~l~~---~~~~~-~-~~~~~wilGEy~~~~~~-~~-~~~~~~~~ 458 (526)
T PF01602_consen 387 EISGDYVSNEIINVIRDLLSNN-PELREKILKKLIELLED---ISSPE-A-LAAAIWILGEYGELIEN-TE-SAPDILRS 458 (526)
T ss_dssp HCTGGGCHCHHHHHHHHHHHHS-TTTHHHHHHHHHHHHTS---SSSHH-H-HHHHHHHHHHHCHHHTT-TT-HHHHHHHH
T ss_pred hhccccccchHHHHHHHHhhcC-hhhhHHHHHHHHHHHHH---hhHHH-H-HHHHHhhhcccCCcccc-cc-cHHHHHHH
Confidence 7655444444466677776553 33344455555555544 23323 3 44445532222222222 11 22333443
Q ss_pred HHHhhhhcccHHHHHHHHHHHHHHHHhCH
Q 010682 419 LERNTQNHWNQAVLNLTQNVRKILCEMDE 447 (504)
Q Consensus 419 L~~~s~~HWn~~Vr~la~~vlk~l~e~D~ 447 (504)
+...... =+..|+..+.+++--+...+|
T Consensus 459 l~~~~~~-~~~~vk~~ilt~~~Kl~~~~~ 486 (526)
T PF01602_consen 459 LIENFIE-ESPEVKLQILTALAKLFKRNP 486 (526)
T ss_dssp HHHHHTT-SHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHhhcc-ccHHHHHHHHHHHHHHHhhCC
Confidence 4333211 145566666665555554454
No 13
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=66.89 E-value=73 Score=37.36 Aligned_cols=298 Identities=14% Similarity=0.210 Sum_probs=161.5
Q ss_pred HHHhHhhccccCCCCCCCCCCCCCCCCCCCCCCccch----hhHHHHHHHHHHHhc--CCCChHHhhhcCCHHHHHHHHh
Q 010682 141 CKMCSLNLFRVFPPKCRSNGTGGETEDEEPMFDPAWS----HLQIVYDLLLRFVSY--GSLDVKVAKKYVDHLFIVRLLD 214 (504)
Q Consensus 141 ~~Mi~~NIFR~lP~~~~~~~~~~d~eedep~~e~sWp----HLqlVYeillrfv~s--~~~d~~~~k~~id~~Fi~~Ll~ 214 (504)
++|+.+|..-.+-....| |.-+--+.++.|-|. |-..+..-|++.+-. |..|+..+ .|++....+.|+.
T Consensus 569 VR~itAlalsalaeaa~P----ygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya-~yyTrevmlil~r 643 (1172)
T KOG0213|consen 569 VRTITALALSALAEAATP----YGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYA-SYYTREVMLILIR 643 (1172)
T ss_pred hhhHHHHHHHHHHHhcCC----cchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHH-HHhHHHHHHHHHH
Confidence 455555555444333333 222222236788886 777888888888765 67777665 5678888999999
Q ss_pred hcCCCChHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHhhhcccCCcC----hHHHHHHHHHHHhccCCCchHHHHH
Q 010682 215 LFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNG----IAELLEIFGSIISGFALPLKEEHKI 290 (504)
Q Consensus 215 lfdSeDprERd~LktiLhrIY~Kf~~~R~fIrk~i~nif~~fi~e~e~hnG----IaELLeIlgSIIngfa~PLKeehk~ 290 (504)
-|+|||..=...+-.++.++-++--.--.|||..|--.|+..--. .+--| -..+.+.-.+|-+..-. ..
T Consensus 644 Ef~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~-rrmA~drr~ykqlv~ttv~ia~KvG~------~~ 716 (1172)
T KOG0213|consen 644 EFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWG-RRMALDRRNYKQLVDTTVEIAAKVGS------DP 716 (1172)
T ss_pred hhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhh-hhhhccccchhhHHHHHHHHHHHhCc------hH
Confidence 999999877777777777777777777888888877666543322 11111 01222222233221100 01
Q ss_pred HHHHHHhhccCCCCcccchhhHHHHHHHH------HhcCCCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHhhCChHH
Q 010682 291 FLCRALIPLHKPKSVGIYHQQLTYCVVQF------IDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAE 364 (504)
Q Consensus 291 Fl~~vLlPLhk~~~~~~y~~qL~~ci~qF------~~KDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeiLe~~~~~~ 364 (504)
...|++.+|-.-. ..|..--...+... ..-|.+|-+..++|++--+-...+.--|||+.. .-+...+ ...
T Consensus 717 ~v~R~v~~lkde~--e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gf-g~V~~~l-g~r 792 (1172)
T KOG0213|consen 717 IVSRVVLDLKDEP--EQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGF-GTVVNAL-GGR 792 (1172)
T ss_pred HHHHHhhhhcccc--HHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhH-HHHHHHH-hhc
Confidence 1234444443321 01111112222222 235777888889998888877666655665532 2221111 111
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcchhH------------------HHHhhhccccccccchHHHHHhhhhc
Q 010682 365 FQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHI------------------LNLVTHNRQVIIPLVFPALERNTQNH 426 (504)
Q Consensus 365 f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i------------------~~li~~n~~~I~Pii~paL~~~s~~H 426 (504)
.++...+|+.-+-.-+++...+|-.+|+.+...-.. .+-+.+....+++.|+.+++....-|
T Consensus 793 ~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvi 872 (1172)
T KOG0213|consen 793 VKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVI 872 (1172)
T ss_pred cccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhc
Confidence 234556677777777788888888877766543211 01111223334455555555544444
Q ss_pred ----ccHHHHHHHHHHHHHHHHhCHHHHHHHH
Q 010682 427 ----WNQAVLNLTQNVRKILCEMDEELVQACK 454 (504)
Q Consensus 427 ----Wn~~Vr~la~~vlk~l~e~D~~lf~~c~ 454 (504)
--..++++.=.+.-+|..--.++-+.|.
T Consensus 873 gm~km~pPi~dllPrltPILknrheKVqen~I 904 (1172)
T KOG0213|consen 873 GMTKMTPPIKDLLPRLTPILKNRHEKVQENCI 904 (1172)
T ss_pred cccccCCChhhhcccchHhhhhhHHHHHHHHH
Confidence 3444555555555555554445544444
No 14
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=65.60 E-value=2e+02 Score=30.93 Aligned_cols=183 Identities=14% Similarity=0.139 Sum_probs=112.3
Q ss_pred HHHHHHHhh-cCCCChHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhccCCCch
Q 010682 207 LFIVRLLDL-FDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLK 285 (504)
Q Consensus 207 ~Fi~~Ll~l-fdSeDprERd~LktiLhrIY~Kf~~~R~fIrk~i~nif~~fi~e~e~hnGIaELLeIlgSIIngfa~PLK 285 (504)
.++.+++.+ ..++|+..|-..-..+-.+-.|+..- ..+...+...+..+ ........-...++++.-|.+|..+-..
T Consensus 189 ~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~-~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~Wi~KaLv~R~~ 266 (415)
T PF12460_consen 189 ELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDD-DDLDEFLDSLLQSI-SSSEDSELRPQALEILIWITKALVMRGH 266 (415)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCh-hhHHHHHHHHHhhh-cccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence 377888876 56778888888888887787885432 23333333333332 1222233344567777666666544333
Q ss_pred HHHHHHHHHHHhhccCCCCcccchhhHHHHHHHHHhcC-----------------CCcHHHHHHHhhhhCCCCCChhHhH
Q 010682 286 EEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKD-----------------PKLATNAIKGLLKYWPVTNSQKELM 348 (504)
Q Consensus 286 eehk~Fl~~vLlPLhk~~~~~~y~~qL~~ci~qF~~KD-----------------p~La~~vi~~LLk~WP~tns~KEvl 348 (504)
+.-..+ ...|+-|...+.++. ..+....-++... -++...++..|+..+-.++.....-
T Consensus 267 ~~~~~~-~~~L~~lL~~~~~g~---~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~ 342 (415)
T PF12460_consen 267 PLATEL-LDKLLELLSSPELGQ---QAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSN 342 (415)
T ss_pred chHHHH-HHHHHHHhCChhhHH---HHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHH
Confidence 333333 344556666644433 2333333222221 1344555666666666666545556
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhh
Q 010682 349 FISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLW 395 (504)
Q Consensus 349 FL~eleeiLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w 395 (504)
+|.=+..|+..++.+-+..-+..|+..+-+|++.++..|-..+|...
T Consensus 343 yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL 389 (415)
T PF12460_consen 343 YLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETL 389 (415)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 68889999999999888888899999999999999988777777544
No 15
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=61.84 E-value=93 Score=36.03 Aligned_cols=161 Identities=15% Similarity=0.116 Sum_probs=98.7
Q ss_pred HHHHHHHHHHhccCCCchHHHHHHHHHHHhhccCCCCcccchhhHHHHHHHHHhcCC-----CcHHHHHHHhhhhCCCCC
Q 010682 268 ELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDP-----KLATNAIKGLLKYWPVTN 342 (504)
Q Consensus 268 ELLeIlgSIIngfa~PLKeehk~Fl~~vLlPLhk~~~~~~y~~qL~~ci~qF~~KDp-----~La~~vi~~LLk~WP~tn 342 (504)
+.|+-|.-+|-+|. ++..+.++|=+|..-=.-..+-+-..-||..|.+--+ ....+.|+-+++. ..+
T Consensus 292 ~Flk~Ls~~ip~fp------~rv~~~kiLP~L~~el~n~~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~--~~~ 363 (700)
T KOG2137|consen 292 SFLKGLSKLIPTFP------ARVLFQKILPTLVAELVNTKMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSA--SDP 363 (700)
T ss_pred HHHHHHHHhhccCC------HHHHHHhhhhHHHHHhccccccccccchhhhhhhccchhhhhhhhhHHHHHHhcc--CCc
Confidence 45555555555552 4444555554443322222333333344443332211 2233445555554 222
Q ss_pred ChhHhHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcchhHHHHhhhccccccccchHHHHHh
Q 010682 343 SQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTHNRQVIIPLVFPALERN 422 (504)
Q Consensus 343 s~KEvlFL~eleeiLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i~~li~~n~~~I~Pii~paL~~~ 422 (504)
-+=-++++.-+.-|++++++++|..-+.| .|-+|+++.-.++=|++|... +.+.+.+- -..+=-.|+|.|+..
T Consensus 364 ~~~~l~i~e~mdlL~~Kt~~e~~~~~Ilp---lL~~S~~~~~~~iQ~~~L~~l--ptv~e~iD--~~~vk~~ilP~l~~l 436 (700)
T KOG2137|consen 364 KQALLFILENMDLLKEKTPPEEVKEKILP---LLYRSLEDSDVQIQELALQIL--PTVAESID--VPFVKQAILPRLKNL 436 (700)
T ss_pred ccchhhHHhhHHHHHhhCChHHHHHHHHH---HHHHHhcCcchhhHHHHHHhh--hHHHHhcc--HHHHHHHHHHHhhcc
Confidence 24446777778888899999998764444 678899999999999999887 44555543 233334567778877
Q ss_pred hhhcccHHHHHHHHHHHHHHH
Q 010682 423 TQNHWNQAVLNLTQNVRKILC 443 (504)
Q Consensus 423 s~~HWn~~Vr~la~~vlk~l~ 443 (504)
+..|=+..|+.-+.-++..++
T Consensus 437 ~~~tt~~~vkvn~L~c~~~l~ 457 (700)
T KOG2137|consen 437 AFKTTNLYVKVNVLPCLAGLI 457 (700)
T ss_pred hhcccchHHHHHHHHHHHHHH
Confidence 888899999988888887776
No 16
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=61.53 E-value=4.1e+02 Score=33.26 Aligned_cols=281 Identities=19% Similarity=0.277 Sum_probs=133.3
Q ss_pred CCCCCCCChHHhHHHHHHHHhcCcccccccCCCcCchhHHHHHHHHHHHHHHhhc-CCCCCChHhHHHHHHHhHhhcccc
Q 010682 73 HLSFKDVSNTQKQNLFVSKLNLCCEVSDFSDSDKVTAEQDLKRQTLIELADFVSS-GSAKFTEPAISGMCKMCSLNLFRV 151 (504)
Q Consensus 73 lp~l~dv~~~e~~~lf~~Kl~~C~~i~DF~dp~~d~~~Ke~K~~tL~EL~~~v~~-~~~~l~e~~~~~i~~Mi~~NIFR~ 151 (504)
+|.+..++-.|-.+ -++++..|-.-+|= |+ .+ .+-+.-+.+.+-+ .-.+-.+.=+..++..|=++|||=
T Consensus 11 ~~~~~~~s~~ell~-rLk~l~~~l~~~~q-d~-~~-------~~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi 80 (1266)
T KOG1525|consen 11 LTSLNPISKDELLK-RLKKLANCLASLDQ-DN-LD-------LASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRI 80 (1266)
T ss_pred ccccCcccHHHHHH-HHHHHHHHHhhccc-Cc-hh-------HHHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHH
Confidence 34445555555544 36788888877773 33 11 1122223333222 111112223556777788888886
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHhcCCCChHHhhhcCCHHH--------HHHHHhhcCCCChHH
Q 010682 152 FPPKCRSNGTGGETEDEEPMFDPAWSHLQIVYDLLLRFVSYGSLDVKVAKKYVDHLF--------IVRLLDLFDSEDPRE 223 (504)
Q Consensus 152 lP~~~~~~~~~~d~eedep~~e~sWpHLqlVYeillrfv~s~~~d~~~~k~~id~~F--------i~~Ll~lfdSeDprE 223 (504)
.-|- -|+.++ .|.=||.++++-+.-. -|.. -.|+-+.| +. .+-+++-+|..|
T Consensus 81 ~aPe-------------aPy~~~---~lkdIf~~~~~q~~gL-~d~~--sp~f~r~~~lletl~~~k-~~l~~~l~d~~e 140 (1266)
T KOG1525|consen 81 YAPE-------------APYTDE---QLKDIFQLILSQFSGL-GDVE--SPYFKRYFYLLETLAKVK-FCLLMLLEDCQE 140 (1266)
T ss_pred hCCC-------------CCCcHH---HHHHHHHHHHHHHhhc-cCCC--CcchhhHHHHHHHHHHhH-HHheeeccchHH
Confidence 6542 233443 5666788777765421 1111 12333322 22 455666666654
Q ss_pred HHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHhhhcccCCcChHHHHHH-HHHHHhccCCCchHHHHHHHHHHHhhccCC
Q 010682 224 RDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEI-FGSIISGFALPLKEEHKIFLCRALIPLHKP 302 (504)
Q Consensus 224 Rd~LktiLhrIY~Kf~~~R~fIrk~i~nif~~fi~e~e~hnGIaELLeI-lgSIIngfa~PLKeehk~Fl~~vLlPLhk~ 302 (504)
.+..+.+-+|+---..++-.--.|.+++..-|-|.+.- -.|+|.+ |..++++.---.++ -.-|-..+|-....
T Consensus 141 --~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~d~v--~~e~L~~ll~~lv~~~~~~~~~--a~~la~~li~~~a~ 214 (1266)
T KOG1525|consen 141 --LVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEEDTV--QSELLDVLLENLVKPGRDTIKE--ADKLASDLIERCAD 214 (1266)
T ss_pred --HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc--hHHHHHHHHHHhccCCCCccHH--HHHHHHHHHHHhhh
Confidence 44445544443221222222222556666655554333 3456553 33444443111111 11123344444444
Q ss_pred CCcccchhhHHHHHHHHHhcCCCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHH-hhCChHHHHHHHHHHHHHHHHhhC
Q 010682 303 KSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVL-EMTSMAEFQKIMVPLFRRIGCCLN 381 (504)
Q Consensus 303 ~~~~~y~~qL~~ci~qF~~KDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeiL-e~~~~~~f~~i~~~lF~~ia~cl~ 381 (504)
.-...+.+-|..|++++-..-.++...+.+-++.+|=..- + +.++-|-.+- +.+...+..+ ...-+.+|+.+.
T Consensus 215 ~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p-~---ll~~vip~l~~eL~se~~~~R--l~a~~lvg~~~~ 288 (1266)
T KOG1525|consen 215 NLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAP-Q---LLLAVIPQLEFELLSEQEEVR--LKAVKLVGRMFS 288 (1266)
T ss_pred hhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhH-H---HHHHHHHHHHHHHhcchHHHH--HHHHHHHHHHHh
Confidence 4445556667777777665555666667777777774421 1 2223333332 2333333221 234455666666
Q ss_pred CCcHHHHHHHHHhh
Q 010682 382 SSHYQVAERAHLLW 395 (504)
Q Consensus 382 S~hfqVAErAL~~w 395 (504)
.++.+.++.=-.+|
T Consensus 289 ~~~~~l~~~~~~~~ 302 (1266)
T KOG1525|consen 289 DKDSQLSETYDDLW 302 (1266)
T ss_pred cchhhhcccchHHH
Confidence 66666665444444
No 17
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=59.14 E-value=15 Score=32.21 Aligned_cols=84 Identities=12% Similarity=0.211 Sum_probs=58.0
Q ss_pred HHHHHHhcCCCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHhhCCh---HH----HHHHHHHHHHHHHHhhCCCcHHH
Q 010682 315 CVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSM---AE----FQKIMVPLFRRIGCCLNSSHYQV 387 (504)
Q Consensus 315 ci~qF~~KDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeiLe~~~~---~~----f~~i~~~lF~~ia~cl~S~hfqV 387 (504)
-+++|+-.+...+..+++.+.++-..+.+.+.+..|.-+.+|+-.... .. |.+.....|..+.......+-+=
T Consensus 18 ~lt~~~~~~~~~a~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~k 97 (121)
T smart00582 18 TLTKWAIEHASHAKEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKRKYGSEFGDELGPVFQDALRDVLGAANDETKKK 97 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 344555555566677777777777778888899999999999965421 23 44455566666666555556677
Q ss_pred HHHHHHhhcch
Q 010682 388 AERAHLLWNNE 398 (504)
Q Consensus 388 AErAL~~w~N~ 398 (504)
..+-+.+|...
T Consensus 98 i~kll~iW~~~ 108 (121)
T smart00582 98 IRRLLNIWEER 108 (121)
T ss_pred HHHHHHHHhcC
Confidence 77888999863
No 18
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=56.47 E-value=1.1e+02 Score=27.88 Aligned_cols=89 Identities=16% Similarity=0.163 Sum_probs=60.1
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcH-HHHHHHHHh---hcchhHHHHhhhccccccccchHHHHHh--
Q 010682 349 FISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHY-QVAERAHLL---WNNEHILNLVTHNRQVIIPLVFPALERN-- 422 (504)
Q Consensus 349 FL~eleeiLe~~~~~~f~~i~~~lF~~ia~cl~S~hf-qVAErAL~~---w~N~~i~~li~~n~~~I~Pii~paL~~~-- 422 (504)
.++||.++.-. ++.+|..++.-|.++|.. +|+|. .=|.+-|.. -.++.|...+.+|...|-- .....
T Consensus 21 ~~~Eia~~t~~-s~~~~~ei~d~L~kRL~~--~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~----~~~f~g~ 93 (122)
T cd03572 21 LYEEIAKLTRK-SVGSCQELLEYLLKRLKR--SSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRE----CANYKGP 93 (122)
T ss_pred HHHHHHHHHHc-CHHHHHHHHHHHHHHhcC--CCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHH----HHHcCCC
Confidence 46677666544 788999999999999997 88887 334444422 2356777777777644311 11111
Q ss_pred ----hhhcccHHHHHHHHHHHHHHHH
Q 010682 423 ----TQNHWNQAVLNLTQNVRKILCE 444 (504)
Q Consensus 423 ----s~~HWn~~Vr~la~~vlk~l~e 444 (504)
.-.-+++.||..|..+++++..
T Consensus 94 ~Dp~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 94 PDPLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred CCcccCcchhHHHHHHHHHHHHHHhc
Confidence 1134899999999999998864
No 19
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=55.71 E-value=41 Score=38.20 Aligned_cols=102 Identities=19% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHhh----------------------cchhHHHHhhhccccccccchHHHHHhhhh
Q 010682 368 IMVPLFRRIGCCLNSSHYQVAERAHLLW----------------------NNEHILNLVTHNRQVIIPLVFPALERNTQN 425 (504)
Q Consensus 368 i~~~lF~~ia~cl~S~hfqVAErAL~~w----------------------~N~~i~~li~~n~~~I~Pii~paL~~~s~~ 425 (504)
+...||...++.+.|+|-+||-.|..|| .|..| -......|+|.+..-|.+-..+
T Consensus 260 mE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~f---a~aav~dvlP~lL~LL~~q~ed 336 (858)
T COG5215 260 MENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGF---ARAAVADVLPELLSLLEKQGED 336 (858)
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcch---HHHHHHHHHHHHHHHHHhcCCC
Q ss_pred c----ccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 010682 426 H----WNQAVLNLTQNVRKILCEMDEELVQACKRKLEEENSTLSVAAERRKLTWERLESAA 482 (504)
Q Consensus 426 H----Wn~~Vr~la~~vlk~l~e~D~~lf~~c~~~~~~~~~~~~~~~~~r~~~W~~l~~~A 482 (504)
. || +...|..+|.++-+.--+.--+-.-.|-++.- |.+.|...+..+
T Consensus 337 ~~~DdWn--~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni--------~~~~w~nreaav 387 (858)
T COG5215 337 YYGDDWN--PSMAASSCLQLFAQLKGDKIMRPVLGFVEQNI--------RSESWANREAAV 387 (858)
T ss_pred ccccccc--hhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhc--------cCchhhhHHHHH
No 20
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=55.66 E-value=41 Score=29.89 Aligned_cols=90 Identities=17% Similarity=0.232 Sum_probs=55.5
Q ss_pred HHHHhhC-ChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhh------cchhHHHHhhhccccccccchHHHHHhhhhc
Q 010682 354 EEVLEMT-SMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLW------NNEHILNLVTHNRQVIIPLVFPALERNTQNH 426 (504)
Q Consensus 354 eeiLe~~-~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w------~N~~i~~li~~n~~~I~Pii~paL~~~s~~H 426 (504)
.+|...+ +..++..++.-|.+||.. ....+..+.-.||.+. .++.|+.-+..+...|-..--=......-..
T Consensus 25 ~eIa~~t~~~~~~~~I~~~l~kRL~~-~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l~~f~~~d~~g~d 103 (125)
T PF01417_consen 25 AEIAQLTYNSKDCQEIMDVLWKRLSK-SDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIRELQDFQYVDPKGKD 103 (125)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHS-STSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGGG---BBTTSTB
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHh-cCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhcceeeccCCCCcc
Confidence 4444444 458888888888888743 3557788888888765 2455555555555544332100000111235
Q ss_pred ccHHHHHHHHHHHHHHHH
Q 010682 427 WNQAVLNLTQNVRKILCE 444 (504)
Q Consensus 427 Wn~~Vr~la~~vlk~l~e 444 (504)
|...||..|..++.+|.|
T Consensus 104 ~~~~VR~~A~~i~~lL~d 121 (125)
T PF01417_consen 104 QGQNVREKAKEILELLND 121 (125)
T ss_dssp HHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 888999999999999953
No 21
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=55.06 E-value=44 Score=29.02 Aligned_cols=90 Identities=16% Similarity=0.199 Sum_probs=68.3
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHhhC---ChHHHHHHHHHHHHHHHHhhCCCcHH
Q 010682 310 QQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMT---SMAEFQKIMVPLFRRIGCCLNSSHYQ 386 (504)
Q Consensus 310 ~qL~~ci~qF~~KDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeiLe~~---~~~~f~~i~~~lF~~ia~cl~S~hfq 386 (504)
++-..-+++++..+...+..++..+.++=-.+.+.+.+.+|..+.+|+... ....|.....++|.....-.+..+-+
T Consensus 18 ~~~I~~lt~~a~~~~~~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~ 97 (114)
T cd03562 18 QPSIQTLTKLAIENRKHAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRK 97 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 344455677777777888888888888888889999999999999999765 34567777788887777655556666
Q ss_pred HHHHHHHhhcchh
Q 010682 387 VAERAHLLWNNEH 399 (504)
Q Consensus 387 VAErAL~~w~N~~ 399 (504)
=..|-+.+|....
T Consensus 98 kl~rl~~iW~~~~ 110 (114)
T cd03562 98 KLERLLNIWEERF 110 (114)
T ss_pred HHHHHHHHccCCC
Confidence 6677778887643
No 22
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=50.16 E-value=1.2e+02 Score=33.74 Aligned_cols=107 Identities=15% Similarity=0.045 Sum_probs=68.3
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHhhcchhHHHHhhhcc---ccccc-cchHHHHHhhhhcccHHHHHHHHHHHHHHHHh
Q 010682 370 VPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTHNR---QVIIP-LVFPALERNTQNHWNQAVLNLTQNVRKILCEM 445 (504)
Q Consensus 370 ~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i~~li~~n~---~~I~P-ii~paL~~~s~~HWn~~Vr~la~~vlk~l~e~ 445 (504)
..++..|..|+.++.-.||+.|..+..+ +..+. +.+++ -+.+.|..... +=|..+|-.++.++-.+...
T Consensus 118 ~~l~~~i~~~L~~~d~~Va~~A~~~L~~------l~~~~~~~~~l~~~~~~~~L~~l~~-~~~~~vR~Rv~el~v~i~~~ 190 (503)
T PF10508_consen 118 NELLPLIIQCLRDPDLSVAKAAIKALKK------LASHPEGLEQLFDSNLLSKLKSLMS-QSSDIVRCRVYELLVEIASH 190 (503)
T ss_pred ccHHHHHHHHHcCCcHHHHHHHHHHHHH------HhCCchhHHHHhCcchHHHHHHHHh-ccCHHHHHHHHHHHHHHHhc
Confidence 4688899999999999999999987643 22221 11211 12455544443 33788999999999999999
Q ss_pred CHHHHHHHHH--HHHHHhhh-HHHHHHHHHHHHHHHHHHHh
Q 010682 446 DEELVQACKR--KLEEENST-LSVAAERRKLTWERLESAAS 483 (504)
Q Consensus 446 D~~lf~~c~~--~~~~~~~~-~~~~~~~r~~~W~~l~~~A~ 483 (504)
.+++++.|.. -+..-... ..+.---+..-.+-+.+.|.
T Consensus 191 S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~ 231 (503)
T PF10508_consen 191 SPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE 231 (503)
T ss_pred CHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc
Confidence 9999999885 22221110 01122234556666777776
No 23
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.78 E-value=5.9e+02 Score=30.92 Aligned_cols=271 Identities=15% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhc------CCCCCChHhHHHHHHHhHhhccccCCCCCCCCCCCCCCCCCCCCCCccch-------hhHHH
Q 010682 116 QTLIELADFVSS------GSAKFTEPAISGMCKMCSLNLFRVFPPKCRSNGTGGETEDEEPMFDPAWS-------HLQIV 182 (504)
Q Consensus 116 ~tL~EL~~~v~~------~~~~l~e~~~~~i~~Mi~~NIFR~lP~~~~~~~~~~d~eedep~~e~sWp-------HLqlV 182 (504)
.+++-|+..+.+ ...-+..+.+..-++.+-.-+=||+|.-.-+ .|||+ .++|| -+-+.
T Consensus 197 el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~----~d~e~-----R~~~~wwK~KKWa~~~L 267 (1010)
T KOG1991|consen 197 ELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLS----LDPED-----RSSWPWWKCKKWALHIL 267 (1010)
T ss_pred HHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhccc----CChhh-----cccccchhhHHHHHHHH
Q ss_pred HHHHHHHHhcCCCC--hHHhhhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHhhhcc
Q 010682 183 YDLLLRFVSYGSLD--VKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFET 260 (504)
Q Consensus 183 Yeillrfv~s~~~d--~~~~k~~id~~Fi~~Ll~lfdSeDprERd~LktiLhrIY~Kf~~~R~fIrk~i~nif~~fi~e~ 260 (504)
|.+|.||-.-.... -+..+.++...|+..+++ ++-.+...+-. +-+.--.+-+.+.+|+.+.
T Consensus 268 ~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile---------------~~lk~l~~~~~-~~yls~rvl~~~l~fl~~~ 331 (1010)
T KOG1991|consen 268 NRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILE---------------VFLKILEQWRQ-QLYLSDRVLYYLLNFLEQC 331 (1010)
T ss_pred HHHHHHhCCccccchhhHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHh-cccCCHHHHHHHHHHHHHh
Q ss_pred cCCcChHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhccCCCCcccchhhHHHHHHHHHhcCCCcHHHHHHHhhhhCCC
Q 010682 261 ERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPV 340 (504)
Q Consensus 261 e~hnGIaELLeIlgSIIngfa~PLKeehk~Fl~~vLlPLhk~~~~~~y~~qL~~ci~qF~~KDp~La~~vi~~LLk~WP~ 340 (504)
-.|.-..-|| |+--..++..+++||.+..-- .+.| .+.|| ...+|.=..+|--
T Consensus 332 Vs~~~twkll--------------~PHl~~ii~~vIFPlmc~~d~---deel-------we~DP---~EYiR~~~Di~ed 384 (1010)
T KOG1991|consen 332 VSHASTWKLL--------------KPHLQVIIQDVIFPLMCFNDE---DEEL-------WEEDP---YEYIRKKFDIFED 384 (1010)
T ss_pred ccHHHHHHHh--------------hhHHHHHHHHhhhhhcCCCcc---cHHH-------HhcCH---HHHHHhcCchhcc
Q ss_pred CCChhHhHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCC----CcHHHHHHHHHhhcchhHHHHhhhccc-------
Q 010682 341 TNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNS----SHYQVAERAHLLWNNEHILNLVTHNRQ------- 409 (504)
Q Consensus 341 tns~KEvlFL~eleeiLe~~~~~~f~~i~~~lF~~ia~cl~S----~hfqVAErAL~~w~N~~i~~li~~n~~------- 409 (504)
..|+---. +..+..+..+-..+.|++++.=+..++.+...+ .+..-.+-||.+..+-- +.+.+.+.
T Consensus 385 ~~sp~~Aa-~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~--~~L~K~s~~~~~mE~ 461 (1010)
T KOG1991|consen 385 GYSPDTAA-LDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLA--SILLKKSPYKSQMEY 461 (1010)
T ss_pred cCCCcHHH-HHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHH--HHHccCCchHHHHHH
Q ss_pred cccccchHHHHHhhhhcccHHHHHHHHHHHHHHHHhC
Q 010682 410 VIIPLVFPALERNTQNHWNQAVLNLTQNVRKILCEMD 446 (504)
Q Consensus 410 ~I~Pii~paL~~~s~~HWn~~Vr~la~~vlk~l~e~D 446 (504)
.+.+-+||.+.... --.|..|+-++..+.++|
T Consensus 462 flv~hVfP~f~s~~-----g~Lrarac~vl~~~~~~d 493 (1010)
T KOG1991|consen 462 FLVNHVFPEFQSPY-----GYLRARACWVLSQFSSID 493 (1010)
T ss_pred HHHHHhhHhhcCch-----hHHHHHHHHHHHHHHhcc
No 24
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=46.22 E-value=2.7e+02 Score=26.59 Aligned_cols=191 Identities=12% Similarity=0.046 Sum_probs=97.8
Q ss_pred CCCChHHHHHHHHHHHHHhhhh--hcchHHHHHHHH---HHHHHhhhcccCCcChHHHHHHHHHHHhccCCCchHHHHHH
Q 010682 217 DSEDPRERDCLKTVLHRIYGKF--MAHRQFIRQAVC---NIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIF 291 (504)
Q Consensus 217 dSeDprERd~LktiLhrIY~Kf--~~~R~fIrk~i~---nif~~fi~e~e~hnGIaELLeIlgSIIngfa~PLKeehk~F 291 (504)
.+.|=.+|.---+-|.++-..- ...++-+...+. ..+..-+. +.+..-..+.+.+++.+..+....+.+. ...
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~-d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLS-DLRSKVSKTACQLLSDLARQLGSHFEPY-ADI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S--HH---HHHHHHHHHHHHHHHHGGGGHHH-HHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHH
Confidence 4566666666555555553322 222222222222 22222121 2333445677778888877665554443 334
Q ss_pred HHHHHhhccCCCCcccchhhHHHHHHHHHhcCCCcHHHH-HHHhhhhCCCCCChhHhHHHHHHHHHHhhCC--hHHHHH-
Q 010682 292 LCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNA-IKGLLKYWPVTNSQKELMFISELEEVLEMTS--MAEFQK- 367 (504)
Q Consensus 292 l~~vLlPLhk~~~~~~y~~qL~~ci~qF~~KDp~La~~v-i~~LLk~WP~tns~KEvlFL~eleeiLe~~~--~~~f~~- 367 (504)
+...|+.++.... ....+.-..|+..+++.-+ ....+ +..+...+---|+.=-..-+.-+..+++..+ ...+..
T Consensus 95 ~l~~Ll~~~~~~~-~~i~~~a~~~L~~i~~~~~-~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~ 172 (228)
T PF12348_consen 95 LLPPLLKKLGDSK-KFIREAANNALDAIIESCS-YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKS 172 (228)
T ss_dssp HHHHHHHGGG----HHHHHHHHHHHHHHHTTS--H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--H
T ss_pred HHHHHHHHHcccc-HHHHHHHHHHHHHHHHHCC-cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhccc
Confidence 4556666665542 2345667778888887655 33333 6666666766666555666778888888776 344433
Q ss_pred -HHHHHHHHHHHhhCCCcHHHHHHHHHhhcchhHHHHhhhccccccc
Q 010682 368 -IMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTHNRQVIIP 413 (504)
Q Consensus 368 -i~~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i~~li~~n~~~I~P 413 (504)
....+.+.|.+|++..+..|=+.|-..|. .+...+.+....++-
T Consensus 173 ~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~--~l~~~~~~~a~~~~~ 217 (228)
T PF12348_consen 173 AFLKQLVKALVKLLSDADPEVREAARECLW--ALYSHFPERAESILS 217 (228)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHH--HHHHHH-HHH-----
T ss_pred chHHHHHHHHHHHCCCCCHHHHHHHHHHHH--HHHHHCCHhhccchh
Confidence 34788899999999999999888876663 233344444444443
No 25
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=43.01 E-value=74 Score=27.95 Aligned_cols=101 Identities=15% Similarity=0.246 Sum_probs=55.6
Q ss_pred cHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCC-CcHH-HHHHHHHhhcchhHHHH
Q 010682 326 LATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNS-SHYQ-VAERAHLLWNNEHILNL 403 (504)
Q Consensus 326 La~~vi~~LLk~WP~tns~KEvlFL~eleeiLe~~~~~~f~~i~~~lF~~ia~cl~S-~hfq-VAErAL~~w~N~~i~~l 403 (504)
++..+..-..+.||..++. |+.++-.++.. ++... .....+++.+.+=+.+ .+-. -.+| ...+...
T Consensus 8 l~~~l~~i~~~~~P~~Wp~----~l~~l~~~~~~-~~~~~-~~~L~iL~~l~eEi~~~~~~~~~~~r------~~~l~~~ 75 (148)
T PF08389_consen 8 LAQVLAEIAKRDWPQQWPD----FLEDLLQLLQS-SPQHL-ELVLRILRILPEEITDFRRSSLSQER------RRELKDA 75 (148)
T ss_dssp HHHHHHHHHHHHTTTTSTT----HHHHHHHHHHT-THHHH-HHHHHHHHHHHHHHHTSHCCHSHHHH------HHHHHHH
T ss_pred HHHHHHHHHHHHChhhCch----HHHHHHHHhcc-chhHH-HHHHHHHHHHHHHHHhhhchhhhHHH------HHHHHHH
Confidence 5666777888999999886 66666666654 33333 2344555555554443 1111 1111 3344455
Q ss_pred hhhccccccccchHHHHHhhhhccc---HHHHHHHHHHHHHH
Q 010682 404 VTHNRQVIIPLVFPALERNTQNHWN---QAVLNLTQNVRKIL 442 (504)
Q Consensus 404 i~~n~~~I~Pii~paL~~~s~~HWn---~~Vr~la~~vlk~l 442 (504)
+.++. |.++..+++....+.+ ..+...+..+++.+
T Consensus 76 l~~~~----~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~ 113 (148)
T PF08389_consen 76 LRSNS----PDILEILSQILSQSSSEANEELVKAALKCLKSW 113 (148)
T ss_dssp HHHHH----HHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHH
T ss_pred HHHHH----HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHH
Confidence 55554 4445555555555554 56666666666554
No 26
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=41.66 E-value=6.8e+02 Score=29.82 Aligned_cols=118 Identities=15% Similarity=0.101 Sum_probs=69.0
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHhhh-hhcchHHHHHHHHHHHHHhhhcccC---CcChHHHHHHHHHHHh--ccCCCch
Q 010682 212 LLDLFDSEDPRERDCLKTVLHRIYGK-FMAHRQFIRQAVCNIIYRFVFETER---HNGIAELLEIFGSIIS--GFALPLK 285 (504)
Q Consensus 212 Ll~lfdSeDprERd~LktiLhrIY~K-f~~~R~fIrk~i~nif~~fi~e~e~---hnGIaELLeIlgSIIn--gfa~PLK 285 (504)
+.+.+.|+|..=-+++-++-..==.+ |++.-+| ++++|-+|--...+ ..-+.-.|.++.||++ .-..|+.
T Consensus 379 f~d~g~spdlaal~fl~~~~sKrke~TfqgiLsf----~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~a 454 (970)
T COG5656 379 FFDNGLSPDLAALFFLIISKSKRKEETFQGILSF----LLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAA 454 (970)
T ss_pred hhcCCCChhHHHHHHHHHHhcccchhhhhhHHHH----HHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHH
Confidence 44566688877666655443221111 5664444 66677666544333 2234568999999998 3334666
Q ss_pred HHHHHHHHHHHhhccCCCCcccchhhHHHHHHHHHh--cCCCcHHHHHHHh
Q 010682 286 EEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFID--KDPKLATNAIKGL 334 (504)
Q Consensus 286 eehk~Fl~~vLlPLhk~~~~~~y~~qL~~ci~qF~~--KDp~La~~vi~~L 334 (504)
-++..|+...++|-.+.++.-. ..+-.+.+..|-+ ||+.++....++.
T Consensus 455 n~me~fiv~hv~P~f~s~ygfL-~Srace~is~~eeDfkd~~ill~aye~t 504 (970)
T COG5656 455 NVMEYFIVNHVIPAFRSNYGFL-KSRACEFISTIEEDFKDNGILLEAYENT 504 (970)
T ss_pred HHHHHHHHHHhhHhhcCcccch-HHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 6788999999999998876533 3334444444411 4454444444433
No 27
>PTZ00429 beta-adaptin; Provisional
Probab=40.95 E-value=6.7e+02 Score=29.60 Aligned_cols=138 Identities=11% Similarity=0.171 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhccCCCCc--ccchhhHHHHHHHHHhc
Q 010682 245 IRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSV--GIYHQQLTYCVVQFIDK 322 (504)
Q Consensus 245 Irk~i~nif~~fi~e~e~hnGIaELLeIlgSIIngfa~PLKeehk~Fl~~vLlPLhk~~~~--~~y~~qL~~ci~qF~~K 322 (504)
....+-+.+.+++.....+ +.|.+.++..|++.+. - .+ .+.+.+-.++. ..+ +.=...+.+++.+|++.
T Consensus 402 ~a~~cV~~Ll~ll~~~~~~--v~e~i~vik~IlrkyP--~--~~--il~~L~~~~~~-~~i~e~~AKaaiiWILGEy~~~ 472 (746)
T PTZ00429 402 VAPDCANLLLQIVDRRPEL--LPQVVTAAKDIVRKYP--E--LL--MLDTLVTDYGA-DEVVEEEAKVSLLWMLGEYCDF 472 (746)
T ss_pred HHHHHHHHHHHHhcCCchh--HHHHHHHHHHHHHHCc--c--HH--HHHHHHHhhcc-cccccHHHHHHHHHHHHhhHhh
Confidence 3344445666666432222 6677778888877663 1 11 11222111111 111 11123456677888765
Q ss_pred CCCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhh
Q 010682 323 DPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLW 395 (504)
Q Consensus 323 Dp~La~~vi~~LLk~WP~tns~KEvlFL~eleeiLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w 395 (504)
-+. +..+++.+++.|---++.=+...|.-...++-..+ .+.+..+..+++..+ -.+.+..|=.||.++|
T Consensus 473 I~~-a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p-~~~~~~l~~vL~~~t--~~~~d~DVRDRA~~Y~ 541 (746)
T PTZ00429 473 IEN-GKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDP-QGMEPQLNRVLETVT--THSDDPDVRDRAFAYW 541 (746)
T ss_pred Hhh-HHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHH--hcCCChhHHHHHHHHH
Confidence 443 67788778888877666556666666666665543 444555545554332 2478999999999999
No 28
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=40.50 E-value=2.9e+02 Score=25.50 Aligned_cols=79 Identities=13% Similarity=0.125 Sum_probs=60.5
Q ss_pred HHHHhcCCCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHhhCChHHHHHHH-HHHHHHHHHhhC------CCcHHHHH
Q 010682 317 VQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIM-VPLFRRIGCCLN------SSHYQVAE 389 (504)
Q Consensus 317 ~qF~~KDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeiLe~~~~~~f~~i~-~~lF~~ia~cl~------S~hfqVAE 389 (504)
...+..+|.-+...++.|.|-=-..|+.-++.-|..++.++..|...-...+. .....-+.+.++ ..|..|-+
T Consensus 26 cD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~ 105 (139)
T cd03567 26 CEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKT 105 (139)
T ss_pred HHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHH
Confidence 44567889999999999999988888888999999999999999876655554 344445555553 36889999
Q ss_pred HHHHhh
Q 010682 390 RAHLLW 395 (504)
Q Consensus 390 rAL~~w 395 (504)
+.|.+.
T Consensus 106 kil~li 111 (139)
T cd03567 106 KIIELL 111 (139)
T ss_pred HHHHHH
Confidence 988553
No 29
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=40.02 E-value=4.1e+02 Score=26.83 Aligned_cols=70 Identities=10% Similarity=0.014 Sum_probs=38.7
Q ss_pred CCCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcH-HHHHHHHHh
Q 010682 323 DPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHY-QVAERAHLL 394 (504)
Q Consensus 323 Dp~La~~vi~~LLk~WP~tns~KEvlFL~eleeiLe~~~~~~f~~i~~~lF~~ia~cl~S~hf-qVAErAL~~ 394 (504)
+|+-...+++.+..+|..-...|.- -.-+..+++..++++...++..+...+...+..++- -|...+|..
T Consensus 141 ~~~~~~~i~~~l~~~~~~l~~~~~G--~~vvq~~l~~~~~~~~~~l~~~l~~~~~~L~~d~~Gn~vvq~~l~~ 211 (322)
T cd07920 141 PPEDLQFIIDAFKGNCVALSTHPYG--CRVIQRCLEHCSEEQREPLLEEILEHALELVQDQFGNYVVQHVLEL 211 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCccc--cHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHhc
Confidence 3445556666666655543322211 123566677777777777777776666666655443 344554443
No 30
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=39.77 E-value=2.9e+02 Score=25.54 Aligned_cols=114 Identities=14% Similarity=0.233 Sum_probs=74.8
Q ss_pred hhHhHHHHHHHHHHhhCC-----h---HHHHH-HHHHHHHHHHHhhCCCcHHHHHHHHHhhcc--hhHHHHhhhcccccc
Q 010682 344 QKELMFISELEEVLEMTS-----M---AEFQK-IMVPLFRRIGCCLNSSHYQVAERAHLLWNN--EHILNLVTHNRQVII 412 (504)
Q Consensus 344 ~KEvlFL~eleeiLe~~~-----~---~~f~~-i~~~lF~~ia~cl~S~hfqVAErAL~~w~N--~~i~~li~~n~~~I~ 412 (504)
...++=|.-|+.+|+.-. . ..|.. +...+|..|.+.+.+++++|.++++.+.-+ .++...++.-.+.++
T Consensus 37 ~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l 116 (168)
T PF12783_consen 37 RSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFL 116 (168)
T ss_pred HHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556777888886532 1 24433 448999999999999999999999855432 233444555556666
Q ss_pred ccchHHHHHhhh-hcccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHh
Q 010682 413 PLVFPALERNTQ-NHWNQAVLNLTQNVRKILCEMDEELVQACKRKLEEEN 461 (504)
Q Consensus 413 Pii~paL~~~s~-~HWn~~Vr~la~~vlk~l~e~D~~lf~~c~~~~~~~~ 461 (504)
+.++-.+..... ..| -|.++..+++-+.. ||.+.-+.=.+|..+.
T Consensus 117 ~~i~~~il~~~~~~~~---~k~~~Le~l~~l~~-~p~~l~~lf~NYDCd~ 162 (168)
T PF12783_consen 117 SHIILRILESDNSSLW---QKELALEILRELCK-DPQFLVDLFVNYDCDL 162 (168)
T ss_pred HHHHHHHHccCCCcHH---HHHHHHHHHHHHHh-ChhHHHHHHHHcCCCC
Confidence 665554444333 346 57778888888884 8887777666665543
No 31
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=38.51 E-value=4.4e+02 Score=26.73 Aligned_cols=57 Identities=21% Similarity=0.261 Sum_probs=42.7
Q ss_pred hhcCCHHHHHHHHhhcC-CCChHHHHHHHHHHHHHhhhhhcchHHHHHH-HHHHHHHhhh
Q 010682 201 KKYVDHLFIVRLLDLFD-SEDPRERDCLKTVLHRIYGKFMAHRQFIRQA-VCNIIYRFVF 258 (504)
Q Consensus 201 k~~id~~Fi~~Ll~lfd-SeDprERd~LktiLhrIY~Kf~~~R~fIrk~-i~nif~~fi~ 258 (504)
+.+++...+.+|+.+++ ++||-.++.....+... ..|...|.+||.. .-..+.+.+.
T Consensus 6 ~~~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~-aaf~~nq~~Ir~~Ggi~lI~~lL~ 64 (254)
T PF04826_consen 6 KNILEAQELQKLLCLLESTEDPFIQEKALIALGNS-AAFPFNQDIIRDLGGISLIGSLLN 64 (254)
T ss_pred cCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhh-ccChhHHHHHHHcCCHHHHHHHcC
Confidence 45688888999999999 68999999999999775 5677777777762 2344444443
No 32
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=37.89 E-value=1.5e+02 Score=27.38 Aligned_cols=20 Identities=40% Similarity=0.589 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHH-hhhhhc
Q 010682 221 PRERDCLKTVLHRI-YGKFMA 240 (504)
Q Consensus 221 prERd~LktiLhrI-Y~Kf~~ 240 (504)
+..|+.+-.++.|| |||...
T Consensus 83 ~ehR~~l~pvvlRILygk~~~ 103 (141)
T PF07539_consen 83 EEHRPELMPVVLRILYGKMQS 103 (141)
T ss_pred HHHHhHHHHHHHHHHHHHHhh
Confidence 67788888888887 776543
No 33
>KOG2175 consensus Protein predicted to be involved in carbohydrate metabolism [Carbohydrate transport and metabolism]
Probab=36.05 E-value=4.7e+02 Score=29.06 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=33.3
Q ss_pred chHHHHHhhhhcccHHHHHHHHHHHHHHHHhCHHHHHHHHH
Q 010682 415 VFPALERNTQNHWNQAVLNLTQNVRKILCEMDEELVQACKR 455 (504)
Q Consensus 415 i~paL~~~s~~HWn~~Vr~la~~vlk~l~e~D~~lf~~c~~ 455 (504)
|++++...-+.- +..+|..+..++..+.|++|.+...-+.
T Consensus 214 i~~~le~~~~~~-d~~~r~~~~di~~~~ve~~~~~i~~~~~ 253 (458)
T KOG2175|consen 214 ILDALEYVLKMP-DTQVRSAATDILARLVEMSPSMIRSFTL 253 (458)
T ss_pred hHHHHHHHhcCC-cchhhHHHHHHHHHHHhcCHHHHHHHHH
Confidence 566676666666 8899999999999999999999887553
No 34
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=35.08 E-value=1.6e+02 Score=27.54 Aligned_cols=50 Identities=16% Similarity=0.352 Sum_probs=32.2
Q ss_pred HHHHHHHhhcCCCChHH-HHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHh
Q 010682 207 LFIVRLLDLFDSEDPRE-RDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRF 256 (504)
Q Consensus 207 ~Fi~~Ll~lfdSeDprE-Rd~LktiLhrIY~Kf~~~R~fIrk~i~nif~~f 256 (504)
.++..|+..+..+||.- .+.....|.+||..--+.-.+.|......+-.|
T Consensus 67 ~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~ 117 (165)
T PF08167_consen 67 QWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKF 117 (165)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHH
Confidence 46677777777666544 667777777777665555556666655544444
No 35
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=34.83 E-value=1.4e+02 Score=27.73 Aligned_cols=79 Identities=19% Similarity=0.412 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhhhcccCCcCh-HHHHHHHHHHHhccCCCchHHHHHHHHHHHhhccCCCCcccchhh-HHHHHHHHHhc
Q 010682 245 IRQAVCNIIYRFVFETERHNGI-AELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQ-LTYCVVQFIDK 322 (504)
Q Consensus 245 Irk~i~nif~~fi~e~e~hnGI-aELLeIlgSIIngfa~PLKeehk~Fl~~vLlPLhk~~~~~~y~~q-L~~ci~qF~~K 322 (504)
+|..+-..+.+-+... . ..| .-.|+|+..++..|..-||.|-..|+..++.|+..++..+.=++. ...++..++ +
T Consensus 70 lk~~l~~~Ll~~~~~~-~-~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~-~ 146 (168)
T PF12783_consen 70 LKDDLCPALLKNLSSS-D-FPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELC-K 146 (168)
T ss_pred HHHHHHHHHHHHHhhh-h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH-h
Confidence 4444444444444332 2 333 345889999999999999999999999999999887765222333 334444444 4
Q ss_pred CCCc
Q 010682 323 DPKL 326 (504)
Q Consensus 323 Dp~L 326 (504)
||.+
T Consensus 147 ~p~~ 150 (168)
T PF12783_consen 147 DPQF 150 (168)
T ss_pred ChhH
Confidence 5543
No 36
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=34.37 E-value=95 Score=34.01 Aligned_cols=165 Identities=13% Similarity=0.201 Sum_probs=87.0
Q ss_pred HHHHHHHHh-hcCCCCCChHhHHHHHHHhHhhccccCCCCCCC------CCCCCCCCCCCC--------------CCCcc
Q 010682 117 TLIELADFV-SSGSAKFTEPAISGMCKMCSLNLFRVFPPKCRS------NGTGGETEDEEP--------------MFDPA 175 (504)
Q Consensus 117 tL~EL~~~v-~~~~~~l~e~~~~~i~~Mi~~NIFR~lP~~~~~------~~~~~d~eedep--------------~~e~s 175 (504)
.|-..+..| ++.-.-+.+-+++-+-.|++.+-=-++|+.... ....++...-.| -.-.+
T Consensus 117 ~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~ 196 (435)
T PF03378_consen 117 ALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVA 196 (435)
T ss_dssp HHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcc
Confidence 344444443 344566778888888888887652234443311 000111111112 12244
Q ss_pred chhhHHHHHHHHHHHhcCCCChHHhhhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhhhcch--HHHHHHHHHHH
Q 010682 176 WSHLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHR--QFIRQAVCNII 253 (504)
Q Consensus 176 WpHLqlVYeillrfv~s~~~d~~~~k~~id~~Fi~~Ll~lfdSeDprERd~LktiLhrIY~Kf~~~R--~fIrk~i~nif 253 (504)
-.||+-|+.+|.+++.|...|..-. ..+..++..+.-+ .=..|+++|+.-++.+....| .|+++-+ +|
T Consensus 197 ~~~l~~iLgvFQkLi~sk~~D~~gF------~LL~~iv~~~p~~--~l~~yl~~I~~lll~RLq~skT~kf~~~fv--~F 266 (435)
T PF03378_consen 197 NNQLEPILGVFQKLIASKANDHYGF------DLLESIVENLPPE--ALEPYLKQIFTLLLTRLQSSKTEKFVKRFV--VF 266 (435)
T ss_dssp -S-CHHHHHHHHHHHT-TTCHHHHH------HHHHHHHHHS-HH--HHGGGHHHHHHHHHHHHHHC--HHHHHHHH--HH
T ss_pred hhhHHHHHHHHHHHHCCCCcchHHH------HHHHHHHHHCCHH--HHHHHHHHHHHHHHHHHhhCCcHHHHHHHH--HH
Confidence 5899999999999999976664321 2444555544321 124588888887777665443 3444443 23
Q ss_pred HHhhhcccCCcChHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhccC
Q 010682 254 YRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHK 301 (504)
Q Consensus 254 ~~fi~e~e~hnGIaELLeIlgSIIngfa~PLKeehk~Fl~~vLlPLhk 301 (504)
+.++- ...|...+.+++.+|..|. ...++.++++|-..
T Consensus 267 ~~~~~---~~~g~~~li~~id~IQ~gl-------F~~il~~v~lp~~~ 304 (435)
T PF03378_consen 267 LSLFA---IKYGPDFLIQTIDSIQPGL-------FGMILEKVWLPDLQ 304 (435)
T ss_dssp HHHHH---HHH-HHHHHHHHHTTSTTH-------HHHHHHHTHHHHGG
T ss_pred HHHHH---HHcCHHHHHHHHHHhcCCc-------HHHHHHHHhcCchh
Confidence 22221 1239999999999988885 24466788888443
No 37
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=32.79 E-value=2.7e+02 Score=26.27 Aligned_cols=25 Identities=36% Similarity=0.336 Sum_probs=18.4
Q ss_pred ccCCCchHHHHHHHHHHHhhccCCC
Q 010682 279 GFALPLKEEHKIFLCRALIPLHKPK 303 (504)
Q Consensus 279 gfa~PLKeehk~Fl~~vLlPLhk~~ 303 (504)
++-.-+..++...+.+++.||.+..
T Consensus 102 d~l~~lp~~~a~~ll~Al~PLi~~s 126 (158)
T PF14676_consen 102 DYLSFLPGDVAIGLLRALLPLIKFS 126 (158)
T ss_dssp GGTTTS-HHHHHHHHHHHHHHHTT-
T ss_pred HHHHhCCHHHHHHHHHHHHHHHhcC
Confidence 3445567788888999999999986
No 38
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=32.62 E-value=1.8e+02 Score=36.30 Aligned_cols=113 Identities=15% Similarity=0.188 Sum_probs=64.7
Q ss_pred CCCCChHHhHHHHHHHHhcCcccccccCCCcCchh---HHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhHhhccccC
Q 010682 76 FKDVSNTQKQNLFVSKLNLCCEVSDFSDSDKVTAE---QDLKRQTLIELADFVSSGSAKFTEPAISGMCKMCSLNLFRVF 152 (504)
Q Consensus 76 l~dv~~~e~~~lf~~Kl~~C~~i~DF~dp~~d~~~---Ke~K~~tL~EL~~~v~~~~~~l~e~~~~~i~~Mi~~NIFR~l 152 (504)
|.|+|....++..=--++.||.+..=- . -+... ----..++.+|-+.+++...
T Consensus 1162 l~dCP~~~~n~yVP~iV~~C~~vVEt~-G-l~~vGIYRIPGN~AAIs~l~E~ln~~~f---------------------- 1217 (1973)
T KOG4407|consen 1162 LADCPTGSCNDYVPMIVQACVCVVETY-G-LDTVGIYRIPGNTAAISALKESLNNRGF---------------------- 1217 (1973)
T ss_pred cccCCcccccccchHHHHHHHHHHhhc-C-ccceeEEecCCcHHHHHHHHHHHhcccc----------------------
Confidence 789999988888888889999876511 0 00000 00012333444333333221
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHhcCC---CChHHhhhcCCHHHHHHHHhhcCCCChHHHHH-HH
Q 010682 153 PPKCRSNGTGGETEDEEPMFDPAWSHLQIVYDLLLRFVSYGS---LDVKVAKKYVDHLFIVRLLDLFDSEDPRERDC-LK 228 (504)
Q Consensus 153 P~~~~~~~~~~d~eedep~~e~sWpHLqlVYeillrfv~s~~---~d~~~~k~~id~~Fi~~Ll~lfdSeDprERd~-Lk 228 (504)
. -|....|+-|.-+.+|-.+|--|+.+-+ +. ++.|++ +|+-=+-+|+-||-. |+
T Consensus 1218 -----------~--~~v~~~DdrWrDvNVVSSLLK~F~RkLPepL~t---~~~Y~~------FIeAnrk~~~l~Rl~~Lr 1275 (1973)
T KOG4407|consen 1218 -----------L--SKVESLDDRWRDVNVVSSLLKMFLRKLPEPLLT---DKLYPF------FIEANRKSTHLNRLHKLR 1275 (1973)
T ss_pred -----------c--hhhhccccchhhhHHHHHHHHHHHHhCCccccc---ccchhh------hhhhcccccHHHHHHHHH
Confidence 1 1223578899999999998888887521 22 234443 455556677777754 55
Q ss_pred HHHHHH
Q 010682 229 TVLHRI 234 (504)
Q Consensus 229 tiLhrI 234 (504)
.+||.+
T Consensus 1276 ~l~~~L 1281 (1973)
T KOG4407|consen 1276 NLLRKL 1281 (1973)
T ss_pred HHHHhC
Confidence 566544
No 39
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=31.99 E-value=4.2e+02 Score=29.43 Aligned_cols=100 Identities=17% Similarity=0.264 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhcCC--CChHHhhhcCCHHHHHHHHhhcC-CCChHHHHHHHHHHHHHhhhhh----------c----ch
Q 010682 180 QIVYDLLLRFVSYGS--LDVKVAKKYVDHLFIVRLLDLFD-SEDPRERDCLKTVLHRIYGKFM----------A----HR 242 (504)
Q Consensus 180 qlVYeillrfv~s~~--~d~~~~k~~id~~Fi~~Ll~lfd-SeDprERd~LktiLhrIY~Kf~----------~----~R 242 (504)
..+-|+|+|+|.... ....+..=.-++.+|.+|++.|+ +.|+......-.+|..|..... + .|
T Consensus 33 ~~ImDlLLklIs~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r 112 (475)
T PF04499_consen 33 PAIMDLLLKLISTDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTR 112 (475)
T ss_pred cHHHHHHHHHHccCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHH
Confidence 468899999998543 22233333346889999999998 5556666666666666644321 1 23
Q ss_pred HHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhc
Q 010682 243 QFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISG 279 (504)
Q Consensus 243 ~fIrk~i~nif~~fi~e~e~hnGIaELLeIlgSIIng 279 (504)
......+-..+..++.+...-.++.-.+.|+-.+|+.
T Consensus 113 ~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRk 149 (475)
T PF04499_consen 113 QLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRK 149 (475)
T ss_pred HHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHh
Confidence 3334444455556666533455565666666666643
No 40
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=30.72 E-value=3.8e+02 Score=25.15 Aligned_cols=83 Identities=13% Similarity=0.221 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcchhHHHHhhhccccccccchHHHHHhhhhcccHHHHHHHHHHHHHHH
Q 010682 364 EFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTHNRQVIIPLVFPALERNTQNHWNQAVLNLTQNVRKILC 443 (504)
Q Consensus 364 ~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i~~li~~n~~~I~Pii~paL~~~s~~HWn~~Vr~la~~vlk~l~ 443 (504)
.|..++.|....+..|+.+++..|=..|+..... |+.++.-.+=+.++..+.... .==|+.||+.|...+.-+.
T Consensus 18 r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~-----Li~~d~ik~k~~l~~~~l~~l-~D~~~~Ir~~A~~~~~e~~ 91 (178)
T PF12717_consen 18 RYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSH-----LILEDMIKVKGQLFSRILKLL-VDENPEIRSLARSFFSELL 91 (178)
T ss_pred hCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHH-----HHHcCceeehhhhhHHHHHHH-cCCCHHHHHHHHHHHHHHH
Confidence 3567788889999999999999999999987743 444433222233322222222 2228899999999998888
Q ss_pred Hh-CHHHHHH
Q 010682 444 EM-DEELVQA 452 (504)
Q Consensus 444 e~-D~~lf~~ 452 (504)
.. +|..+..
T Consensus 92 ~~~~~~~i~~ 101 (178)
T PF12717_consen 92 KKRNPNIIYN 101 (178)
T ss_pred HhccchHHHH
Confidence 87 6665544
No 41
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=30.28 E-value=2.6e+02 Score=25.26 Aligned_cols=84 Identities=20% Similarity=0.310 Sum_probs=53.0
Q ss_pred HHHHhhC-ChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhc------chhHHHHhhhccccccccchHHHH-----H
Q 010682 354 EEVLEMT-SMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWN------NEHILNLVTHNRQVIIPLVFPALE-----R 421 (504)
Q Consensus 354 eeiLe~~-~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~------N~~i~~li~~n~~~I~Pii~paL~-----~ 421 (504)
.+|...+ +.++|..|+.-|.+||... ..+...+-.||.+.. .+.++.-+.++...| ..|. .
T Consensus 23 ~eIa~~t~~~~~~~~Im~~l~kRL~~~--~k~WR~vyKaL~lleyLl~nGse~vv~~~r~~~~~i-----~~L~~F~~~d 95 (123)
T cd03571 23 AEIARATYNYVEFQEIMSMLWKRLNDK--GKNWRHVYKALTLLEYLLKNGSERVVDDARENLYII-----RTLKDFQYID 95 (123)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHH-----HhhccceeeC
Confidence 3444433 5788999999999999866 567777888886662 233333333332222 2221 1
Q ss_pred hhhhcccHHHHHHHHHHHHHHHH
Q 010682 422 NTQNHWNQAVLNLTQNVRKILCE 444 (504)
Q Consensus 422 ~s~~HWn~~Vr~la~~vlk~l~e 444 (504)
....-|-..||..|.+++.+|.|
T Consensus 96 ~~g~d~G~~VR~ka~~i~~Ll~D 118 (123)
T cd03571 96 ENGKDQGINVREKAKEILELLED 118 (123)
T ss_pred CCCCchhHHHHHHHHHHHHHhCC
Confidence 11235999999999999999964
No 42
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.14 E-value=1e+03 Score=28.58 Aligned_cols=301 Identities=15% Similarity=0.163 Sum_probs=158.4
Q ss_pred hHhHHHHHHHhHhhccccCCCCC-CCCCCCCCCCCCC-C---C-CCccchhhHHHHHHHHHHHhcCC-CChHHhhhcCC-
Q 010682 134 EPAISGMCKMCSLNLFRVFPPKC-RSNGTGGETEDEE-P---M-FDPAWSHLQIVYDLLLRFVSYGS-LDVKVAKKYVD- 205 (504)
Q Consensus 134 e~~~~~i~~Mi~~NIFR~lP~~~-~~~~~~~d~eede-p---~-~e~sWpHLqlVYeillrfv~s~~-~d~~~~k~~id- 205 (504)
-.-...+.+-+..+|-+.|-.+. +..+ ..- -|+. + + .-+.=+||--..-.+.||+++.. .-.+.|..+++
T Consensus 447 tn~lvdv~~Ff~~~ilp~L~s~~vn~~p-ilk-a~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEk 524 (960)
T KOG1992|consen 447 TNELVDVVDFFANQILPDLLSPNVNEFP-ILK-ADAIKYIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEK 524 (960)
T ss_pred ccccccHHHHHHHHhhHHhccCcccccc-chh-hcccceeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHh
Confidence 34456778888888887765421 2111 000 1111 1 1 24455677777777888877622 11222222221
Q ss_pred ----------------------HHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhhhc----chH-HHHHHH---------
Q 010682 206 ----------------------HLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMA----HRQ-FIRQAV--------- 249 (504)
Q Consensus 206 ----------------------~~Fi~~Ll~lfdSeDprERd~LktiLhrIY~Kf~~----~R~-fIrk~i--------- 249 (504)
...+.+|+.-++.++.-|-+||-..+-|+++--.. +-+ .+++-.
T Consensus 525 il~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KN 604 (960)
T KOG1992|consen 525 LLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKN 604 (960)
T ss_pred ccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcC
Confidence 23456677888899999999998888888753211 111 111111
Q ss_pred --HHHHHHhhhccc-------CCcC---hHHHHHHHHHHHhccCCCchHHHHH----------------------HHHHH
Q 010682 250 --CNIIYRFVFETE-------RHNG---IAELLEIFGSIISGFALPLKEEHKI----------------------FLCRA 295 (504)
Q Consensus 250 --~nif~~fi~e~e-------~hnG---IaELLeIlgSIIngfa~PLKeehk~----------------------Fl~~v 295 (504)
+-.|+.|.+|+- .++| |+.+-+-|-..+ ..=|.|+-.. .+..+
T Consensus 605 Ps~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~f---q~Il~eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l 681 (960)
T KOG1992|consen 605 PSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVF---QTILSEDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPL 681 (960)
T ss_pred CCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHH
Confidence 126777777742 3444 111111111000 0001111111 12233
Q ss_pred HhhccCCCCcc--cchhhHHHHHHHHHhcCCCcHH--HHHHHhhhhCCCCCChh--HhHHHHHHHHHHhhCChHHHHHHH
Q 010682 296 LIPLHKPKSVG--IYHQQLTYCVVQFIDKDPKLAT--NAIKGLLKYWPVTNSQK--ELMFISELEEVLEMTSMAEFQKIM 369 (504)
Q Consensus 296 LlPLhk~~~~~--~y~~qL~~ci~qF~~KDp~La~--~vi~~LLk~WP~tns~K--EvlFL~eleeiLe~~~~~~f~~i~ 369 (504)
+-||..+.... -=-+.|...+..|+.+++.... .-+.++|-|.-+--.+| ..-=...+..|++.+++.+....+
T Consensus 682 ~~~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSka~Dh~GF~LLn~i~~~~~~~~~~py~ 761 (960)
T KOG1992|consen 682 FPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASKANDHHGFYLLNTIIESIPPNELAPYM 761 (960)
T ss_pred HHHhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCcccchhHHHHHHHHHhcCCHhhhhHHH
Confidence 33444433221 1124566677778888887665 55666776666533333 222345678888999999888777
Q ss_pred HHHHHHHHHhhCCCcHHHHHH----H---HHhhcchhHHHHhhhccccccccchHHHHHhhhhcccHHHHHHHHHHHHHH
Q 010682 370 VPLFRRIGCCLNSSHYQVAER----A---HLLWNNEHILNLVTHNRQVIIPLVFPALERNTQNHWNQAVLNLTQNVRKIL 442 (504)
Q Consensus 370 ~~lF~~ia~cl~S~hfqVAEr----A---L~~w~N~~i~~li~~n~~~I~Pii~paL~~~s~~HWn~~Vr~la~~vlk~l 442 (504)
..+|--+-+-++++. .|+ - +.+....+--....+....|-|-+|..+. .+.|......+...+.+-+
T Consensus 762 k~i~~llf~Rlqnsk---T~kf~k~~~vF~~~~~ik~~~~~l~e~~d~IQ~~~fg~l~---e~~ii~~l~~i~~~~~rk~ 835 (960)
T KOG1992|consen 762 KQIFGLLFQRLQNSK---TEKFVKSFIVFFSLFTIKKGGLMLAEVIDGIQPGMFGMLL---ENFIIPELPKIILRVDRKI 835 (960)
T ss_pred HHHHHHHHHHHhccC---cHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHHHH---HHhccccchhhhhhhhHHH
Confidence 777666666666654 233 1 12222222222344566777777777664 4678877777776666655
Q ss_pred HHh
Q 010682 443 CEM 445 (504)
Q Consensus 443 ~e~ 445 (504)
+.+
T Consensus 836 ~av 838 (960)
T KOG1992|consen 836 MAV 838 (960)
T ss_pred HHH
Confidence 543
No 43
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=29.90 E-value=4.1e+02 Score=23.82 Aligned_cols=81 Identities=15% Similarity=0.123 Sum_probs=60.0
Q ss_pred HHHHHHhcCCCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHhhCChHHHHHHHH-HHHHHHHHhhC---CCcHHHHHH
Q 010682 315 CVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMV-PLFRRIGCCLN---SSHYQVAER 390 (504)
Q Consensus 315 ci~qF~~KDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeiLe~~~~~~f~~i~~-~lF~~ia~cl~---S~hfqVAEr 390 (504)
=+...+..++.-+..+++.|.|.==..|+.-+..-|.-++.++..+++.-...+.. .....+.+.+. ..|.+|-++
T Consensus 23 ~icd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~k 102 (133)
T cd03561 23 ELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREK 102 (133)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 34445677788888888888887777899999999999999999987755555544 44444555554 469999999
Q ss_pred HHHhh
Q 010682 391 AHLLW 395 (504)
Q Consensus 391 AL~~w 395 (504)
++.+.
T Consensus 103 il~ll 107 (133)
T cd03561 103 ALELI 107 (133)
T ss_pred HHHHH
Confidence 88665
No 44
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=29.83 E-value=2.5e+02 Score=24.22 Aligned_cols=73 Identities=16% Similarity=0.190 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcchhHHHHhhhccccc---cccchHHHHHhhhhcccHHHHHHHHHHHHH
Q 010682 365 FQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTHNRQVI---IPLVFPALERNTQNHWNQAVLNLTQNVRKI 441 (504)
Q Consensus 365 f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i~~li~~n~~~I---~Pii~paL~~~s~~HWn~~Vr~la~~vlk~ 441 (504)
..+....|.+-+-.|++.++.+|=..|..-.-| +.+..+..+ ++-||++|.+.... =++.||+.|..+-+.
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~n-----i~k~~~~~~l~~f~~IF~~L~kl~~D-~d~~Vr~~a~~Ld~l 94 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYN-----ISKVARGEILPYFNEIFDALCKLSAD-PDENVRSAAELLDRL 94 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHcC-CchhHHHHHHHHHHH
Confidence 455555666666689999999998888754432 333333333 45677777776533 367788777666555
Q ss_pred HH
Q 010682 442 LC 443 (504)
Q Consensus 442 l~ 443 (504)
|.
T Consensus 95 lk 96 (97)
T PF12755_consen 95 LK 96 (97)
T ss_pred hc
Confidence 53
No 45
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=29.31 E-value=1.7e+02 Score=24.14 Aligned_cols=42 Identities=17% Similarity=0.054 Sum_probs=33.9
Q ss_pred hHHhhhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhh
Q 010682 197 VKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKF 238 (504)
Q Consensus 197 ~~~~k~~id~~Fi~~Ll~lfdSeDprERd~LktiLhrIY~Kf 238 (504)
+...+.+++...+..|+.++++.|++=|...-..|.++-...
T Consensus 39 ~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 39 NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 555666677788899999999999999999989998885444
No 46
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=28.23 E-value=4.8e+02 Score=24.07 Aligned_cols=80 Identities=15% Similarity=0.170 Sum_probs=60.3
Q ss_pred HHHHhcCCCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHhhCChHHHHHHH-HHHHHHHHHhhCC-CcHHHHHHHHHh
Q 010682 317 VQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIM-VPLFRRIGCCLNS-SHYQVAERAHLL 394 (504)
Q Consensus 317 ~qF~~KDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeiLe~~~~~~f~~i~-~~lF~~ia~cl~S-~hfqVAErAL~~ 394 (504)
...+..++.-+..+++.|.|-==..|+.-+..-|..++.++..++..-.+.+. ..+...+.+.++. .|.+|-+++|.+
T Consensus 25 cD~I~~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~l 104 (144)
T cd03568 25 CDKVKSDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREV 104 (144)
T ss_pred HHHHhcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence 34566777778888888877666789999999999999999998875554443 3455566666666 899999998876
Q ss_pred hc
Q 010682 395 WN 396 (504)
Q Consensus 395 w~ 396 (504)
..
T Consensus 105 i~ 106 (144)
T cd03568 105 VK 106 (144)
T ss_pred HH
Confidence 53
No 47
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=27.72 E-value=4.8e+02 Score=31.52 Aligned_cols=143 Identities=16% Similarity=0.130 Sum_probs=88.5
Q ss_pred HHHHhhhhCC-CCCChhHhHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhh---cchhHHHHhh
Q 010682 330 AIKGLLKYWP-VTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLW---NNEHILNLVT 405 (504)
Q Consensus 330 vi~~LLk~WP-~tns~KEvlFL~eleeiLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w---~N~~i~~li~ 405 (504)
++-.|+.+.- .+.++|- ++|.-+..+|..++-+...+-+..|+..|-+|++-+..-|--.++... --+. -.++.
T Consensus 868 ivP~l~~~~~t~~~~~K~-~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~-~tL~t 945 (1030)
T KOG1967|consen 868 IVPILVSKFETAPGSQKH-NYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTES-ETLQT 945 (1030)
T ss_pred hHHHHHHHhccCCccchh-HHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhc-cccch
Confidence 3344444444 3444444 557788888888888777888889999999999998888733343333 2111 12345
Q ss_pred hccccccccchHHHHHhhhhccc--HHHHHHHHHHHHHHHHh---------CHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 010682 406 HNRQVIIPLVFPALERNTQNHWN--QAVLNLTQNVRKILCEM---------DEELVQACKRKLEEENSTLSVAAERRKLT 474 (504)
Q Consensus 406 ~n~~~I~Pii~paL~~~s~~HWn--~~Vr~la~~vlk~l~e~---------D~~lf~~c~~~~~~~~~~~~~~~~~r~~~ 474 (504)
.+-.+++| .+...+..|=| ..||..|.+.|.+|-+. -|++-.....-..+++..-.++....+..
T Consensus 946 ~~~~Tlvp----~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 946 EHLSTLVP----YLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred HHHhHHHH----HHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence 55555544 45555666655 89999999999999982 22333322222223334444455566788
Q ss_pred HHHH
Q 010682 475 WERL 478 (504)
Q Consensus 475 W~~l 478 (504)
|-.|
T Consensus 1022 W~~l 1025 (1030)
T KOG1967|consen 1022 WYML 1025 (1030)
T ss_pred hhhc
Confidence 8765
No 48
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=26.17 E-value=6.8e+02 Score=25.18 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=12.9
Q ss_pred CCHHHHHHHHhhcCCCChHHHHHHHH
Q 010682 204 VDHLFIVRLLDLFDSEDPRERDCLKT 229 (504)
Q Consensus 204 id~~Fi~~Ll~lfdSeDprERd~Lkt 229 (504)
.-...+.++++... +.+|+.+..
T Consensus 92 ~g~~vlqkll~~~~---~~~~~~i~~ 114 (322)
T cd07920 92 YGCRVIQKLLESIS---EEQISLLVK 114 (322)
T ss_pred hhHHHHHHHHHhcC---HHHHHHHHH
Confidence 44456677777665 555544433
No 49
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=25.95 E-value=8.1e+02 Score=30.00 Aligned_cols=128 Identities=12% Similarity=0.107 Sum_probs=89.6
Q ss_pred HHHHhhhhCCC--CCChhHhHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcchhHHHHhhhc
Q 010682 330 AIKGLLKYWPV--TNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTHN 407 (504)
Q Consensus 330 vi~~LLk~WP~--tns~KEvlFL~eleeiLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i~~li~~n 407 (504)
.+-|+..-.|- +.+++.+.-|..+-.+|-..+|+.|.+...++-..+..|+.-+.+||+-.||-+. ..++..|..-
T Consensus 477 lvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~--~~lvkvirpl 554 (1233)
T KOG1824|consen 477 LVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVC--QQLVKVIRPL 554 (1233)
T ss_pred cchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHH--HHHHHHhccc
Confidence 34455555553 4446777778888888999999999999999999999999999999999999887 3566666432
Q ss_pred c--------ccccccchHHHHHhhhhcccHHHHHHHHHHHHHH----HHhCHHHHHHHHHHHHH
Q 010682 408 R--------QVIIPLVFPALERNTQNHWNQAVLNLTQNVRKIL----CEMDEELVQACKRKLEE 459 (504)
Q Consensus 408 ~--------~~I~Pii~paL~~~s~~HWn~~Vr~la~~vlk~l----~e~D~~lf~~c~~~~~~ 459 (504)
. ..+=+++--.+.+-..+-=++.||..|..++.++ -|++..--..|+..+-+
T Consensus 555 ~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~e 618 (1233)
T KOG1824|consen 555 QPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLE 618 (1233)
T ss_pred CCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 2 2222333334445555677999999998877654 45555545556555443
No 50
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.72 E-value=6.9e+02 Score=30.72 Aligned_cols=283 Identities=15% Similarity=0.182 Sum_probs=135.6
Q ss_pred HHHHHHHHHHhhc-CCCCCChHhHHHHHHHhHhhccccCCCCCCC----CCCCCCCCCCCCCCCccchhhHHHHHHHHHH
Q 010682 115 RQTLIELADFVSS-GSAKFTEPAISGMCKMCSLNLFRVFPPKCRS----NGTGGETEDEEPMFDPAWSHLQIVYDLLLRF 189 (504)
Q Consensus 115 ~~tL~EL~~~v~~-~~~~l~e~~~~~i~~Mi~~NIFR~lP~~~~~----~~~~~d~eedep~~e~sWpHLqlVYeillrf 189 (504)
...|..+.+.+.. |...|.++-+.++..-+..++--.+-....- ..+.+|-+|+|-+.|..=.-+.-+-+++-+.
T Consensus 751 ~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l 830 (1075)
T KOG2171|consen 751 SEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAAL 830 (1075)
T ss_pred HHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3333333334433 5678888877777766666554333221111 1122333333333333333444555666665
Q ss_pred HhcCCCChHHhhhcCCHH---HHHHHHhhcCCCChHHHHHHHHHHHHHhhhhhc-------------------chHHHHH
Q 010682 190 VSYGSLDVKVAKKYVDHL---FIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMA-------------------HRQFIRQ 247 (504)
Q Consensus 190 v~s~~~d~~~~k~~id~~---Fi~~Ll~lfdSeDprERd~LktiLhrIY~Kf~~-------------------~R~fIrk 247 (504)
++. + |.-+... |.-.++.++.+..+.||..--.++--+...+-. --+=+|+
T Consensus 831 ~k~--~-----k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~~pEVRq 903 (1075)
T KOG2171|consen 831 AKA--L-----KGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEGCGEASAKYKERFLPLVLEALQDSDPEVRQ 903 (1075)
T ss_pred HHH--c-----cccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCCCHHHHH
Confidence 542 2 2223333 456678899999999998876666555432211 1112233
Q ss_pred HHHH---HHHHhhhcccCCcChHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhccCCCCcccchhhHHHHHHHHHhcCC
Q 010682 248 AVCN---IIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDP 324 (504)
Q Consensus 248 ~i~n---if~~fi~e~e~hnGIaELLeIlgSIIngfa~PLKeehk~Fl~~vLlPLhk~~~~~~y~~qL~~ci~qF~~KDp 324 (504)
++.. +..+|.-+. +-+=+.+++++|+-++.-.-. ..||+..- ......||-..+-..|
T Consensus 904 aAsYGiGvlaq~~g~~-y~~v~~~~l~~L~~~iq~~~a-r~Ee~~~a-----------------teNa~gaiaki~~~~~ 964 (1075)
T KOG2171|consen 904 AAAYGMGVLAQFGGED-YAPVCSEALPLLVQVLQPPLA-RTEENRRA-----------------TENAIGAIAKILLFNP 964 (1075)
T ss_pred HHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHHHcChhh-hhHHHhHH-----------------HHHHHHHHHHHHHhCC
Confidence 3221 111211111 111234555555544432111 02233321 2345666665555555
Q ss_pred CcH--HHHHHHhhhhCCCCCChhHhHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcchhHHH
Q 010682 325 KLA--TNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILN 402 (504)
Q Consensus 325 ~La--~~vi~~LLk~WP~tns~KEvlFL~eleeiLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i~~ 402 (504)
..+ +.|+-.++..=|..... .--.++|..|+..+.+.|-.|.-. +|
T Consensus 965 ~~i~vdqvl~~~l~~LPl~~D~----------------------eEa~~iy~~l~~L~e~n~p~v~~~-----~n----- 1012 (1075)
T KOG2171|consen 965 NRIPVDQVLPAWLSWLPLKEDK----------------------EEAVPIYTFLSDLYESNHPIVLGP-----NN----- 1012 (1075)
T ss_pred ccCcHHHHHHHHHHhCCCccch----------------------hhhhhHHHHHHHHHHhCCCeeeCC-----Cc-----
Confidence 443 34444444444443321 123578888998888888664321 11
Q ss_pred HhhhccccccccchHHHHHhhhhcccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHh
Q 010682 403 LVTHNRQVIIPLVFPALERNTQNHWNQAVLNLTQNVRKILCEMDEELVQACKRKLEEEN 461 (504)
Q Consensus 403 li~~n~~~I~Pii~paL~~~s~~HWn~~Vr~la~~vlk~l~e~D~~lf~~c~~~~~~~~ 461 (504)
+|...|+.++..++....-.+=+... ...+++|.+.. .+..|.+|...+..+.
T Consensus 1013 ---~~ip~i~~v~~~~~~~~~~~~~~~~~--r~~~ilkq~~~-~~~~~~~~~~~L~~~~ 1065 (1075)
T KOG2171|consen 1013 ---QNIPKILSVCAESLADKKIEPRSTLA--RVIEILKQFLA-PPSQFAALLATLPPDQ 1065 (1075)
T ss_pred ---ccchHHHHHHHhhhhccCCCccchHH--HHHHHHHHHhc-CHHHHHHHHHhCCHHH
Confidence 12223333333333333333333333 44566666655 7788888887766554
No 51
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=25.70 E-value=64 Score=27.59 Aligned_cols=38 Identities=16% Similarity=0.376 Sum_probs=34.3
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhhhhhcchHHH
Q 010682 208 FIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFI 245 (504)
Q Consensus 208 Fi~~Ll~lfdSeDprERd~LktiLhrIY~Kf~~~R~fI 245 (504)
=+.+|+++..|--....++...+|+.+|+-|..+||++
T Consensus 47 kmRkLld~v~akG~~~k~~F~~iL~e~~~~y~~~~~~~ 84 (85)
T cd08324 47 KVRKILDLVQSKGEEVSEYFLYLLQQLADAYVDLRPWL 84 (85)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHhhhhhhccc
Confidence 45678889999999999999999999999999999974
No 52
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=25.66 E-value=3.2e+02 Score=29.10 Aligned_cols=89 Identities=17% Similarity=0.255 Sum_probs=51.7
Q ss_pred HHHHHhhC-ChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhc---chhHHHHhhhcccccccc-chHH-HH-Hhhhh
Q 010682 353 LEEVLEMT-SMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWN---NEHILNLVTHNRQVIIPL-VFPA-LE-RNTQN 425 (504)
Q Consensus 353 leeiLe~~-~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~---N~~i~~li~~n~~~I~Pi-i~pa-L~-~~s~~ 425 (504)
|.+|.+.. +..+|..||.-|.+|+.. .-.+...+-.||.+.+ ...-.+++...+..++.| +... -| ...-.
T Consensus 42 m~eIA~~ty~~~e~~eIm~vi~kRl~d--~gknWR~VyKaLtlleyLl~~GSErv~~~~ren~~~I~tL~~Fq~iD~~G~ 119 (336)
T KOG2056|consen 42 MAEIAQATYNFVEYQEIMDVLWKRLND--SGKNWRHVYKALTLLEYLLKNGSERVVDETRENIYTIETLKDFQYIDEDGK 119 (336)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHhcCcHHHHHHHHhhhHHHHHHhhceeeCCCCc
Confidence 44555544 789999999999999553 2356666666665541 111112333444444332 1111 01 11223
Q ss_pred cccHHHHHHHHHHHHHHH
Q 010682 426 HWNQAVLNLTQNVRKILC 443 (504)
Q Consensus 426 HWn~~Vr~la~~vlk~l~ 443 (504)
-|-..||.+|.+++.+|.
T Consensus 120 dqG~nVRkkak~l~~LL~ 137 (336)
T KOG2056|consen 120 DQGLNVRKKAKELLSLLE 137 (336)
T ss_pred cchHHHHHHHHHHHHHhc
Confidence 488889999999999995
No 53
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=25.40 E-value=5.3e+02 Score=23.64 Aligned_cols=79 Identities=13% Similarity=0.123 Sum_probs=56.9
Q ss_pred HHHHhcCCCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHhhCChHHHHHHH-HHHHHHHHHhhC-CCcHHHHHHHHHh
Q 010682 317 VQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIM-VPLFRRIGCCLN-SSHYQVAERAHLL 394 (504)
Q Consensus 317 ~qF~~KDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeiLe~~~~~~f~~i~-~~lF~~ia~cl~-S~hfqVAErAL~~ 394 (504)
...+..++.-+...++.|.|-==..|+.-+..-|..++.++..+...-...+. ..+...+.+.++ ..|.+|-+++|.+
T Consensus 29 cD~In~~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~l 108 (142)
T cd03569 29 CDMIRSKDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILEL 108 (142)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHH
Confidence 34566777777788888877776788899999999999999888765444433 334445555554 6899999998866
Q ss_pred h
Q 010682 395 W 395 (504)
Q Consensus 395 w 395 (504)
.
T Consensus 109 i 109 (142)
T cd03569 109 I 109 (142)
T ss_pred H
Confidence 4
No 54
>PF15611 EH_Signature: EH_Signature domain
Probab=25.34 E-value=6.4e+02 Score=26.38 Aligned_cols=92 Identities=21% Similarity=0.304 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHhh-C-CCcHHHHHHHHHhhcchhHHHHhhhccccccccchHHHHHhhhhcccHHHHHHHHHHHH
Q 010682 363 AEFQKIMVPLFRRIGCCL-N-SSHYQVAERAHLLWNNEHILNLVTHNRQVIIPLVFPALERNTQNHWNQAVLNLTQNVRK 440 (504)
Q Consensus 363 ~~f~~i~~~lF~~ia~cl-~-S~hfqVAErAL~~w~N~~i~~li~~n~~~I~Pii~paL~~~s~~HWn~~Vr~la~~vlk 440 (504)
+....++..+..+...|. . ..|-.+-+.++.+|.|+++ | .+...|..---....-++.
T Consensus 187 ~~~~~~~~~lL~~~~~~~~~~~~~~~l~~~~l~~~GdPr~------------~--------~~~~~W~~v~e~a~~~v~~ 246 (389)
T PF15611_consen 187 EQRKRALEALLERYIDRSPDEPVHEALRDLLLAIWGDPRL------------P--------SSQPNWSGVSEEARQMVRR 246 (389)
T ss_pred hHHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHhCCCCC------------C--------ccccchhhcCHHHHHHHHH
Confidence 333444455555555433 1 2455566666666666553 1 1111288755556666777
Q ss_pred HHHHhCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 010682 441 ILCEMDEELVQACKRKLEEENSTLSVAAERRKLTWERLESA 481 (504)
Q Consensus 441 ~l~e~D~~lf~~c~~~~~~~~~~~~~~~~~r~~~W~~l~~~ 481 (504)
-|..-|=..|-+.+..+.. ....|+.-|.+..+.
T Consensus 247 Wl~~~dL~~Ff~~l~~~~~-------~~~~R~~FW~~y~~~ 280 (389)
T PF15611_consen 247 WLSKEDLELFFDLLSQDGD-------MDPRRKNFWLRYLDQ 280 (389)
T ss_pred HHHHHHHHHHHHHHhhhcc-------cchHHHHHHHHHHHH
Confidence 8888887777776654432 556799999999887
No 55
>KOG4553 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.25 E-value=1.2e+03 Score=29.10 Aligned_cols=166 Identities=17% Similarity=0.169 Sum_probs=84.4
Q ss_pred CCChHhHHHHHHHhHhhccccCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHhcCCCChHHhhhcCCHHHHH
Q 010682 131 KFTEPAISGMCKMCSLNLFRVFPPKCRSNGTGGETEDEEPMFDPAWSHLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIV 210 (504)
Q Consensus 131 ~l~e~~~~~i~~Mi~~NIFR~lP~~~~~~~~~~d~eedep~~e~sWpHLqlVYeillrfv~s~~~d~~~~k~~id~~Fi~ 210 (504)
.+..+...+++.|=++|=--=.|- -+ -.|.-|-| .||-..++|.|.+.. .-..+.+.+.+.
T Consensus 328 ~l~~~~l~A~~dm~~~~~~~w~~~--------e~------~Ee~~~~~-~iv~~~ilrvVkn~~----~er~hv~~sl~~ 388 (1398)
T KOG4553|consen 328 QLCLDRLDAMMDMKKTFQKLWKIG--------EQ------AEECLWMS-DIVCGRILRVVKNQL----SERLHVNESLRR 388 (1398)
T ss_pred hhhHHHHHHHHHHHHHHhhhcccc--------cc------HHHHHHHH-HHHHHHHHHHHHhhh----hhhhhcchHHHH
Confidence 455566666666665552222221 01 12455655 899999999998643 234667777766
Q ss_pred HHHhhcCCCCh--------------HHHHH---HHHHHHHHhhhhhcchHHHHHH-HHHHHHHhhhcccCCcChHHHHHH
Q 010682 211 RLLDLFDSEDP--------------RERDC---LKTVLHRIYGKFMAHRQFIRQA-VCNIIYRFVFETERHNGIAELLEI 272 (504)
Q Consensus 211 ~Ll~lfdSeDp--------------rERd~---LktiLhrIY~Kf~~~R~fIrk~-i~nif~~fi~e~e~hnGIaELLeI 272 (504)
....+++|=|+ .-|-. ..-++.+|-+--...-..+|.. +..++.+++.. .....+..+++.
T Consensus 389 ~gf~ll~S~~l~~Vl~g~~~q~~dskgrv~~g~~~kL~~~ill~~fk~Hdm~r~eileq~~kRi~s~-~~~S~~~i~idl 467 (1398)
T KOG4553|consen 389 IGFRLLISLMLLLVLPGYQKQVVDSKGRVADGCTLKLLSRILLIIFKQHDMDRGEILEQLFKRIASS-SNNSSALILIDL 467 (1398)
T ss_pred HhhHHHHhhhhhhcccchhhcccccccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh-ccccchHHHHHH
Confidence 66666666322 11111 2223333332211111112222 22345555543 222334455666
Q ss_pred HHHHHhccCC-----------------CchHHHHHHHHHHHhhccCCCCcccchhhHHHHHHHHHhc
Q 010682 273 FGSIISGFAL-----------------PLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDK 322 (504)
Q Consensus 273 lgSIIngfa~-----------------PLKeehk~Fl~~vLlPLhk~~~~~~y~~qL~~ci~qF~~K 322 (504)
++-++....+ -+.-+...+|.+++|||+|. ..+|-.|...-+.|
T Consensus 468 l~~lv~~~sL~~l~~s~~v~Elfdy~~fm~g~is~rLi~aviPLiK~------S~~lRDalIlVLrK 528 (1398)
T KOG4553|consen 468 LRELVRKCSLEILNNSKLVDELFDYVCFMRGDISVRLIRAVIPLIKT------SPQLRDALILVLRK 528 (1398)
T ss_pred HHHHHHhcchHHHhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHhc------CHHHHHHHHHHHHH
Confidence 6655543322 12234556789999999997 45666665544443
No 56
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=24.89 E-value=1.5e+02 Score=25.71 Aligned_cols=36 Identities=14% Similarity=0.208 Sum_probs=30.2
Q ss_pred ccchHHHHHhhhhcccHHHHHHHHHHHHHHHHhCHHH
Q 010682 413 PLVFPALERNTQNHWNQAVLNLTQNVRKILCEMDEEL 449 (504)
Q Consensus 413 Pii~paL~~~s~~HWn~~Vr~la~~vlk~l~e~D~~l 449 (504)
|.+...+ .++-+|=+.+||.-+..+|.+|+|.-|..
T Consensus 10 ~~l~~~i-~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~ 45 (102)
T PF12333_consen 10 PLLMLYI-SSAMTHISPDIREDSLKFLDLLLEHAPDE 45 (102)
T ss_pred HHHHHHH-HHHHHhCCHHHHHhHHHHHHHHHHHCChH
Confidence 4444433 67789999999999999999999999988
No 57
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=24.83 E-value=5.8e+02 Score=23.86 Aligned_cols=49 Identities=8% Similarity=-0.010 Sum_probs=28.6
Q ss_pred hHhHHHHHHHHHHhhCC-hHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 010682 345 KELMFISELEEVLEMTS-MAEFQKIMVPLFRRIGCCLNSSHYQVAERAHL 393 (504)
Q Consensus 345 KEvlFL~eleeiLe~~~-~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~ 393 (504)
.+--+-.-+..+++.++ +.+-..+...|+.++..+.....-++...+++
T Consensus 123 ~~~~~~~I~~fll~~i~~d~~~~~l~~kl~~~~~~~~~~~~~~~~~d~~~ 172 (178)
T PF12717_consen 123 SREKRKKIYKFLLDFIDKDKQKESLVEKLCQRFLNAVVDEDERVLRDILY 172 (178)
T ss_pred CHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHcccccHHHHHHHHH
Confidence 33344555566677776 66666677778887777664333334444443
No 58
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=24.69 E-value=5.2e+02 Score=30.07 Aligned_cols=103 Identities=12% Similarity=0.113 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhc-CCCChHHhhhcCC-HHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHhh-
Q 010682 181 IVYDLLLRFVSY-GSLDVKVAKKYVD-HLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFV- 257 (504)
Q Consensus 181 lVYeillrfv~s-~~~d~~~~k~~id-~~Fi~~Ll~lfdSeDprERd~LktiLhrIY~Kf~~~R~fIrk~i~nif~~fi- 257 (504)
.+.+.+.++++. .+++|...+..+. +.-..-++.++=|+|+.=++.-.++|..+|| -.+.+.-|+..+.+.+-..+
T Consensus 496 ~~~~~~~~il~rls~~~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d-~~~R~e~i~~ll~~~~~~tL~ 574 (727)
T PF12726_consen 496 QITDLISQILERLSDFDPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFD-VDGRLEAIQALLQSNFSPTLS 574 (727)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHhHHHHHH
Confidence 334444444443 4678887777765 4456778899999999999999999999998 44444445444444333222
Q ss_pred ---------hcccCCcChHHHHHHHHHHHhccCCCc
Q 010682 258 ---------FETERHNGIAELLEIFGSIISGFALPL 284 (504)
Q Consensus 258 ---------~e~e~hnGIaELLeIlgSIIngfa~PL 284 (504)
-+...+....-++.++..||++++-|.
T Consensus 575 ai~~~l~~~~~~~~~~p~pr~vr~~~DIi~~Lcdp~ 610 (727)
T PF12726_consen 575 AINWSLRQLTKLKFFEPCPRMVRCLMDIIEVLCDPV 610 (727)
T ss_pred HHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHcCCC
Confidence 122345555666666666666666653
No 59
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=24.31 E-value=6.9e+02 Score=25.41 Aligned_cols=174 Identities=14% Similarity=0.204 Sum_probs=84.9
Q ss_pred HHHHHHHHhccCCCchHHHH--HHHHHHHhhccCCCCcccchhhHHHHHHHHHhcCCCcHHHHHHHhhhhCCCCCChhHh
Q 010682 270 LEIFGSIISGFALPLKEEHK--IFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKEL 347 (504)
Q Consensus 270 LeIlgSIIngfa~PLKeehk--~Fl~~vLlPLhk~~~~~~y~~qL~~ci~qF~~KDp~La~~vi~~LLk~WP~tns~KEv 347 (504)
|.|.+........++.+... ..+...++|-........ ...=..|+..|+--|.+++...+.-+.+---.....=.+
T Consensus 4 L~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~v-R~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~ 82 (298)
T PF12719_consen 4 LSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAV-RELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKI 82 (298)
T ss_pred HHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHH
Confidence 44555555444444444322 455666667777665533 333346666666666666666555555544333334444
Q ss_pred HHHHHHHHHHhhCChHHHHHHH--------HHHHHHHHHhhCCCcH-----------------------HHHHHHHHhhc
Q 010682 348 MFISELEEVLEMTSMAEFQKIM--------VPLFRRIGCCLNSSHY-----------------------QVAERAHLLWN 396 (504)
Q Consensus 348 lFL~eleeiLe~~~~~~f~~i~--------~~lF~~ia~cl~S~hf-----------------------qVAErAL~~w~ 396 (504)
.-|+-+-+++-.-+.+.|.... ..+.+.+.+.+.+.+- .|-.+-+..|=
T Consensus 83 ~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF 162 (298)
T PF12719_consen 83 TALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYF 162 (298)
T ss_pred HHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 4455555555443333332222 2445555555555442 22222222332
Q ss_pred chhHHHHhhhccccccccchHHHHHhhhhcccHHHHHHHHHHHHHHHHhCH
Q 010682 397 NEHILNLVTHNRQVIIPLVFPALERNTQNHWNQAVLNLTQNVRKILCEMDE 447 (504)
Q Consensus 397 N~~i~~li~~n~~~I~Pii~paL~~~s~~HWn~~Vr~la~~vlk~l~e~D~ 447 (504)
|+.-.+ .+.-+.++.+.||+.-..+..| ...+......++..+.+...
T Consensus 163 ~p~t~~--~~~LrQ~L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~~ 210 (298)
T PF12719_consen 163 NPSTED--NQRLRQCLSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAPD 210 (298)
T ss_pred CcccCC--cHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCcc
Confidence 222110 0122344556666655554444 45566666666666665543
No 60
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=24.21 E-value=6e+02 Score=27.45 Aligned_cols=107 Identities=15% Similarity=0.161 Sum_probs=71.9
Q ss_pred HhHHHHHHHHHHhhCChHHHHHHH----HHHHHHHHHhhCCCcHHHHHHHHHhhcchhHHHHhhhcccccccc--chHHH
Q 010682 346 ELMFISELEEVLEMTSMAEFQKIM----VPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTHNRQVIIPL--VFPAL 419 (504)
Q Consensus 346 EvlFL~eleeiLe~~~~~~f~~i~----~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i~~li~~n~~~I~Pi--i~paL 419 (504)
.++-+..+..|+|.++......+. ..++++|-.|+-.++-.||..|..-...- .++-..-..|||. +-+--
T Consensus 99 KiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikri---alfpaaleaiFeSellDdlh 175 (524)
T KOG4413|consen 99 KILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRI---ALFPAALEAIFESELLDDLH 175 (524)
T ss_pred hhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHH---HhcHHHHHHhcccccCChHH
Confidence 345578888999999876666654 47999999999999999999998655431 2233333344442 11111
Q ss_pred HHhhhhcccHHHHHHHHHHHHHHHHhCHHHHHHHHH
Q 010682 420 ERNTQNHWNQAVLNLTQNVRKILCEMDEELVQACKR 455 (504)
Q Consensus 420 ~~~s~~HWn~~Vr~la~~vlk~l~e~D~~lf~~c~~ 455 (504)
.+|..-.-|.-+|-..+..+--+..+.|..-++|..
T Consensus 176 lrnlaakcndiaRvRVleLIieifSiSpesaneckk 211 (524)
T KOG4413|consen 176 LRNLAAKCNDIARVRVLELIIEIFSISPESANECKK 211 (524)
T ss_pred HhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhh
Confidence 233334456777777777777777788888888864
No 61
>PF08578 DUF1765: Protein of unknown function (DUF1765); InterPro: IPR013887 This entry represents a conserved region found in hypothetical proteins from fungi, mycetozoa and entamoebidae.
Probab=23.90 E-value=4.1e+02 Score=23.74 Aligned_cols=105 Identities=20% Similarity=0.216 Sum_probs=59.0
Q ss_pred HHHHhhhhCCCCCChhHhHHHHHHHHHHhhCCh------HHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcchhHHHH
Q 010682 330 AIKGLLKYWPVTNSQKELMFISELEEVLEMTSM------AEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNL 403 (504)
Q Consensus 330 vi~~LLk~WP~tns~KEvlFL~eleeiLe~~~~------~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i~~l 403 (504)
+++.+.+==|.-++.+-...++-+++.+..... ..|. -.-.++-+-+.++|.|.++--|+|.+.=| .-..
T Consensus 5 ~~~~~~~kTs~yd~~~~~~~~d~l~~~i~~~~~~~~~~~~~~d--w~fwl~~i~~ml~s~n~~~~~r~l~fLyn--~w~~ 80 (126)
T PF08578_consen 5 ILKAIAKKTSIYDSNAVFLLLDLLEEFIFQFDSYNPSLPDFFD--WDFWLDGIRMMLESDNVQSEIRALSFLYN--IWDL 80 (126)
T ss_pred HHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHhhcccCCcccC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HHHH
Confidence 344444444555556666666677776654331 2221 13455667777889999999999954422 1222
Q ss_pred hh-hccccc---cccchH-HHHHhhhhcccHHHHHHHHHH
Q 010682 404 VT-HNRQVI---IPLVFP-ALERNTQNHWNQAVLNLTQNV 438 (504)
Q Consensus 404 i~-~n~~~I---~Pii~p-aL~~~s~~HWn~~Vr~la~~v 438 (504)
+. +.++.+ .-.++. .....-=.|||+.||..=...
T Consensus 81 ~~~~~~~~~~~~~~~Ll~~~~f~~lF~HW~~~VR~~f~~L 120 (126)
T PF08578_consen 81 FPSESRRKISLCLDWLLSEKWFFKLFLHWSPMVRSYFHRL 120 (126)
T ss_pred cChhHHHHHHHHHHHHcCchHHHHHHhcCCHHHHHHHHHH
Confidence 32 222332 344444 333444679999999765544
No 62
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=23.86 E-value=5.3e+02 Score=23.55 Aligned_cols=88 Identities=16% Similarity=0.193 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhcCCCChHHhhhcCCHHHHHHHHhhcCCCChHHH-HHHHHHHHHHhhhhhcchHHHHHHHHHHHHHhh-
Q 010682 180 QIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRER-DCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFV- 257 (504)
Q Consensus 180 qlVYeillrfv~s~~~d~~~~k~~id~~Fi~~Ll~lfdSeDprER-d~LktiLhrIY~Kf~~~R~fIrk~i~nif~~fi- 257 (504)
..|..+|.+|+.+-+ ...|+..+...+++...+.|..+| ..++.++ .+.......+.+.+-..|++..
T Consensus 57 ~~va~~lK~~Lr~Lp------~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~Lp~~~~~~L~~l~~~l~~i~~ 126 (174)
T smart00324 57 HDVAGLLKLFLRELP------EPLIPYELYEEFIEAAKVEDETERLRALRELI----SLLPPANRATLRYLLAHLNRVAE 126 (174)
T ss_pred HHHHHHHHHHHHhCC------CccCCHHHHHHHHHHHhCCCHHHHHHHHHHHH----HHCCHHHHHHHHHHHHHHHHHHh
Confidence 378888999987532 256788888888888887777665 3344444 4444433333444555565554
Q ss_pred hcccCCcChHHHHHHHHHHH
Q 010682 258 FETERHNGIAELLEIFGSII 277 (504)
Q Consensus 258 ~e~e~hnGIaELLeIlgSII 277 (504)
++..+.-++.-|-.++|..+
T Consensus 127 ~~~~n~M~~~nLa~~f~P~l 146 (174)
T smart00324 127 HSEENKMTARNLAIVFGPTL 146 (174)
T ss_pred ccccCCCCHHHHHHHHhccc
Confidence 22334445555666666554
No 63
>PF12290 DUF3802: Protein of unknown function (DUF3802); InterPro: IPR020979 This family of proteins is found in bacteria and are typically between 114 and 143 amino acids in length. There is a conserved KNLFD sequence motif. The annotation with this family suggests that it may be the B subunit of bacterial type IIA DNA topoisomerase but there is no evidence to support this annotation.
Probab=23.81 E-value=1.9e+02 Score=26.08 Aligned_cols=52 Identities=15% Similarity=0.367 Sum_probs=41.0
Q ss_pred chhhHHHHHHHHHhcCCCcHHHHH---------------HHhhhhCCCCCChhHhHHHHHHHHHHhh
Q 010682 308 YHQQLTYCVVQFIDKDPKLATNAI---------------KGLLKYWPVTNSQKELMFISELEEVLEM 359 (504)
Q Consensus 308 y~~qL~~ci~qF~~KDp~La~~vi---------------~~LLk~WP~tns~KEvlFL~eleeiLe~ 359 (504)
+..+++.-+..+|+++|.|...+= .-|-+.|-+--+..|+.||.|...++-.
T Consensus 39 vee~ia~~im~vc~Qnp~L~~~~R~~iirE~Daiv~DLeEVLa~V~~~~aT~eQ~~Fi~Ef~~LiKN 105 (113)
T PF12290_consen 39 VEEQIASQIMAVCEQNPELEFSQRFQIIREADAIVYDLEEVLASVWNQKATNEQIAFIEEFIGLIKN 105 (113)
T ss_pred HHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 577888888999999999876432 3456789999999999999988777543
No 64
>PF09059 TyeA: TyeA; InterPro: IPR015144 This domain is composed of two pairs of parallel alpha-helices, and interacts with the bacterial protein YopN via hydrophobic residues located on the helices. Association of TyeA with the C terminus of YopN is accompanied by conformational changes in both polypeptides that create order out of disorder: the resulting structure then serves as an impediment to type III secretion of YopN []. ; PDB: 1XL3_D.
Probab=23.64 E-value=1.1e+02 Score=26.35 Aligned_cols=47 Identities=15% Similarity=0.385 Sum_probs=35.7
Q ss_pred HhcCCCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHhhCChHHHH
Q 010682 320 IDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQ 366 (504)
Q Consensus 320 ~~KDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeiLe~~~~~~f~ 366 (504)
+...+-+...-|..+..-=+...+..+|.||.|+-+++..++.+-|.
T Consensus 15 L~eq~Wi~~~~i~~l~~~~~~~d~e~qI~Flrel~~l~r~~Pv~vF~ 61 (87)
T PF09059_consen 15 LVEQRWIGPSQIERLAEALGLPDIEQQILFLRELKELFRLMPVDVFN 61 (87)
T ss_dssp HHHSTT--HHHHHHHHHCT--SSHHHHHHHHHHHHHHHHTS-GGGSS
T ss_pred HhcCcCcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHCcHHhcC
Confidence 45667888888888888889999999999999999999988766553
No 65
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=23.05 E-value=5.1e+02 Score=24.47 Aligned_cols=56 Identities=18% Similarity=0.359 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhCChHHHHHHH------HHHHHHHHHhhCCCcHHHHHHHHHhhcchhHHHHhhh
Q 010682 349 FISELEEVLEMTSMAEFQKIM------VPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTH 406 (504)
Q Consensus 349 FL~eleeiLe~~~~~~f~~i~------~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i~~li~~ 406 (504)
+=+-+.+++..++-+++..+. .+.|+.+-+.+.|+.||-.-.+ +|+|+.+..++..
T Consensus 103 ~~g~~~di~~~lP~~~l~aL~~~K~~~s~~F~~f~~~l~S~ef~~~~~~--~~~~~~~~~~~~~ 164 (179)
T PF06757_consen 103 LNGFVDDILALLPRDKLRALYEEKLATSPEFAEFVEALRSPEFQQLYNA--LWASPEFQRLLNE 164 (179)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHcCHHHHHHHHH--HHcCHHHHHHHHH
Confidence 345556666666767765554 5899999999999999866554 6899998777653
No 66
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.61 E-value=2e+02 Score=33.93 Aligned_cols=72 Identities=21% Similarity=0.369 Sum_probs=46.8
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHhhcc---hhHH------HHhhhccc------------cccccchHHHHHhh----h
Q 010682 370 VPLFRRIGCCLNSSHYQVAERAHLLWNN---EHIL------NLVTHNRQ------------VIIPLVFPALERNT----Q 424 (504)
Q Consensus 370 ~~lF~~ia~cl~S~hfqVAErAL~~w~N---~~i~------~li~~n~~------------~I~Pii~paL~~~s----~ 424 (504)
..||.+....+.|+|-+||-.|+.||.+ |.+- ..+.++.. .++|.+...|.+-- .
T Consensus 258 ~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~ 337 (859)
T KOG1241|consen 258 QALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDD 337 (859)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCccc
Confidence 3499999999999999999999999993 3332 22233333 56666666665422 1
Q ss_pred hcccHHHHHHHHHHHHHHH
Q 010682 425 NHWNQAVLNLTQNVRKILC 443 (504)
Q Consensus 425 ~HWn~~Vr~la~~vlk~l~ 443 (504)
.-||.. ..|-.+|.++-
T Consensus 338 DdWnp~--kAAg~CL~l~A 354 (859)
T KOG1241|consen 338 DDWNPA--KAAGVCLMLFA 354 (859)
T ss_pred ccCcHH--HHHHHHHHHHH
Confidence 249965 44555555543
No 67
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=22.54 E-value=3.3e+02 Score=22.31 Aligned_cols=65 Identities=15% Similarity=0.041 Sum_probs=38.8
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHhhcchhH-----HHHhhhccccccccchHHHHHhhhhcccHHHHHHHHHHHHHH
Q 010682 371 PLFRRIGCCLNSSHYQVAERAHLLWNNEHI-----LNLVTHNRQVIIPLVFPALERNTQNHWNQAVLNLTQNVRKIL 442 (504)
Q Consensus 371 ~lF~~ia~cl~S~hfqVAErAL~~w~N~~i-----~~li~~n~~~I~Pii~paL~~~s~~HWn~~Vr~la~~vlk~l 442 (504)
.++..+..++++++..|.+.|+..+.|=-. ...+ ....++|.+...+ ... +..++..+..++.-|
T Consensus 49 ~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~--~~~g~l~~l~~~l----~~~-~~~~~~~a~~~l~~l 118 (120)
T cd00020 49 GGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV--LEAGGVPKLVNLL----DSS-NEDIQKNATGALSNL 118 (120)
T ss_pred CChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH--HHCCChHHHHHHH----hcC-CHHHHHHHHHHHHHh
Confidence 777888888899999999999877655211 0000 0112334444433 222 567777777776654
No 68
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=22.15 E-value=6.7e+02 Score=29.12 Aligned_cols=106 Identities=22% Similarity=0.235 Sum_probs=72.3
Q ss_pred HHHHHhhhhCCCCCChhHhHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcchhHHHHhhhcc
Q 010682 329 NAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTHNR 408 (504)
Q Consensus 329 ~vi~~LLk~WP~tns~KEvlFL~eleeiLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i~~li~~n~ 408 (504)
+++.+|+.|.=.|+|+.-+ +||-.+.... -..+|..|..|+..+++.+. ||.++. + +|....
T Consensus 39 ~l~~~l~~y~~~t~s~~~~-------~il~~~~~P~----~K~~~~~l~~~~~~~~~Rl~--~L~Ll~--~---~v~~qp 100 (668)
T PF04388_consen 39 WLVNGLVDYYLSTNSQRAL-------EILVGVQEPH----DKHLFDKLNDYFVKPSYRLQ--ALTLLG--H---FVRSQP 100 (668)
T ss_pred HHHHHHHHHHhhcCcHHHH-------HHHHhcCCcc----HHHHHHHHHHHHcCchhHHH--HHHHHH--H---HHhcCC
Confidence 7788999999999987543 4554442221 02478899999999887753 565553 2 243333
Q ss_pred ccccc----cchHHHHHhhhhcccHHHHHHHHHHHHHHHHhCHHHHHH
Q 010682 409 QVIIP----LVFPALERNTQNHWNQAVLNLTQNVRKILCEMDEELVQA 452 (504)
Q Consensus 409 ~~I~P----ii~paL~~~s~~HWn~~Vr~la~~vlk~l~e~D~~lf~~ 452 (504)
.-++. -+|+.|.++.+.==+.++...|..+|-||.=+=|.....
T Consensus 101 ~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~ 148 (668)
T PF04388_consen 101 PWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGP 148 (668)
T ss_pred chHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhH
Confidence 33332 378888888888889999999999999998665544333
No 69
>PF14724 mit_SMPDase: Mitochondrial-associated sphingomyelin phosphodiesterase
Probab=21.76 E-value=5.9e+02 Score=30.16 Aligned_cols=114 Identities=17% Similarity=0.297 Sum_probs=71.3
Q ss_pred HHHHHHhhhhCCCCCChhHhHHHHHHHHHHhhCCh--------------------HHHHHHH-------HHHHHHHHHh-
Q 010682 328 TNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSM--------------------AEFQKIM-------VPLFRRIGCC- 379 (504)
Q Consensus 328 ~~vi~~LLk~WP~tns~KEvlFL~eleeiLe~~~~--------------------~~f~~i~-------~~lF~~ia~c- 379 (504)
-.+++..+.|||...|-+ .-+|--|..++| +.+...+ ..+|..+...
T Consensus 371 Y~FL~~~f~~wPLdsSFr-----~VLE~WLSYIQPWRY~~~~~~~~~~~~~~~~~~~W~~FV~~Nl~~YT~lf~~fl~R~ 445 (765)
T PF14724_consen 371 YRFLRHCFDHWPLDSSFR-----VVLELWLSYIQPWRYTPEKQSPQSESQDRPVSERWAPFVLENLLFYTSLFQGFLPRF 445 (765)
T ss_pred HHHHHHhccCCCChHHHH-----HHHHHHHHhhCCeecCCccCCCccccccccchHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 356788899999998743 334545654432 1222211 2344433332
Q ss_pred h----CC-CcHHHHHHHHHhhcchhHHHHhhhcccccccc------------chHHHHHhhhhcccHHHHHHHHHHHHHH
Q 010682 380 L----NS-SHYQVAERAHLLWNNEHILNLVTHNRQVIIPL------------VFPALERNTQNHWNQAVLNLTQNVRKIL 442 (504)
Q Consensus 380 l----~S-~hfqVAErAL~~w~N~~i~~li~~n~~~I~Pi------------i~paL~~~s~~HWn~~Vr~la~~vlk~l 442 (504)
+ .+ -|.++..|.+.+++-+.+..++.+.-+....- +.|..-..--..|+..+.+.+..|..-+
T Consensus 446 ~r~Dl~~~~na~ml~RvakVfsQ~~L~~~l~~~E~l~~~~~~~~~~~~~~~~~~~~~~~S~~s~~~~~~t~~~~~vkshv 525 (765)
T PF14724_consen 446 LRLDLSSPKNALMLFRVAKVFSQPNLAEMLQNGEQLFLEPEHGFPHRQHRVNLTPSKSGSFLSSWNPAVTDASFKVKSHV 525 (765)
T ss_pred HhcccccchhHHHHHHHHHHhCchhHHHHHHHHHHHhcCCccccCCCccccccCcccCCCcccCCCccchhHHHHHHHHH
Confidence 1 22 46788899999999999999987665544432 1122222223679999999999999888
Q ss_pred HHhC
Q 010682 443 CEMD 446 (504)
Q Consensus 443 ~e~D 446 (504)
+++.
T Consensus 526 ~~Le 529 (765)
T PF14724_consen 526 YELE 529 (765)
T ss_pred Hhhh
Confidence 8884
No 70
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.25 E-value=3.6e+02 Score=31.90 Aligned_cols=74 Identities=27% Similarity=0.348 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhhccCCCC--cccchhhHHHHHHHHHhcCCCcHHHHHHHhhhhCCCCCC---hhHhHHHHHHHHHHhh
Q 010682 286 EEHKIFLCRALIPLHKPKS--VGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNS---QKELMFISELEEVLEM 359 (504)
Q Consensus 286 eehk~Fl~~vLlPLhk~~~--~~~y~~qL~~ci~qF~~KDp~La~~vi~~LLk~WP~tns---~KEvlFL~eleeiLe~ 359 (504)
++..+||.+-+.-=|...+ -+.|.|-|..-+-.+-.|-|..+..++..+++|---+|+ .--++|+.|.-+.++.
T Consensus 351 ediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~ 429 (948)
T KOG1058|consen 351 EDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPN 429 (948)
T ss_pred HHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCch
Confidence 5577888888877777633 277998898888888888899999999999999998887 4567888887777653
No 71
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=20.41 E-value=1.3e+03 Score=27.55 Aligned_cols=100 Identities=18% Similarity=0.387 Sum_probs=58.7
Q ss_pred HHHHHHHHhhhhhcchHHHHHHHHH--------HHHHhhhcccC-CcChHHHHHHHHHHHhccCCCchHHHHHHHHHHHh
Q 010682 227 LKTVLHRIYGKFMAHRQFIRQAVCN--------IIYRFVFETER-HNGIAELLEIFGSIISGFALPLKEEHKIFLCRALI 297 (504)
Q Consensus 227 LktiLhrIY~Kf~~~R~fIrk~i~n--------if~~fi~e~e~-hnGIaELLeIlgSIIngfa~PLKeehk~Fl~~vLl 297 (504)
|..|+.|+++|+..-+.+ +.+|.- +|-+=+-.... .+-..-+|+++-|.++.- -..-+-...+.+.++
T Consensus 130 L~~iv~rmi~kcl~d~e~-~~aiGia~E~~rld~ie~Ail~~d~~~~~~~yll~l~~s~v~~~--efR~~vlr~lv~~y~ 206 (929)
T KOG2062|consen 130 LRDIVERMIQKCLDDNEY-KQAIGIAFETRRLDIIEEAILKSDSVIGNLTYLLELLISLVNNR--EFRNKVLRLLVKTYL 206 (929)
T ss_pred HHHHHHHHHHHhhhhhHH-HHHHhHHhhhhhHHHHHHHhccccccchHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHc
Confidence 555666677777765543 222221 11111111122 223456788888888721 112233345678888
Q ss_pred hccCCCCcccchhhHHHHHHHHHhcCCCcHHHHHHHhhh
Q 010682 298 PLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLK 336 (504)
Q Consensus 298 PLhk~~~~~~y~~qL~~ci~qF~~KDp~La~~vi~~LLk 336 (504)
++-+|..++. ..|+ +.-.||..+..+++.|++
T Consensus 207 ~~~~PDy~~v-----c~c~--v~Ldd~~~va~ll~kL~~ 238 (929)
T KOG2062|consen 207 KLPSPDYFSV-----CQCY--VFLDDAEAVADLLEKLVK 238 (929)
T ss_pred cCCCCCeeee-----eeee--EEcCCHHHHHHHHHHHHh
Confidence 8888876654 4455 356899999999999998
No 72
>KOG2188 consensus Predicted RNA-binding protein, contains Pumilio domains [Translation, ribosomal structure and biogenesis]
Probab=20.19 E-value=1.4e+03 Score=26.56 Aligned_cols=20 Identities=40% Similarity=0.733 Sum_probs=15.7
Q ss_pred HhhcCCCCh---HHHHHHHHHHH
Q 010682 213 LDLFDSEDP---RERDCLKTVLH 232 (504)
Q Consensus 213 l~lfdSeDp---rERd~LktiLh 232 (504)
+.+++-.|+ .|+-.+|.+|.
T Consensus 321 ~~~~~e~d~~~~kE~~~~k~~l~ 343 (650)
T KOG2188|consen 321 FQLFNEKDGLWGKERSFLKELLS 343 (650)
T ss_pred hhhccccCcccccccHHHHHHHh
Confidence 345666777 99999999887
Done!