Query 010682
Match_columns 504
No_of_seqs 182 out of 315
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 12:02:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010682.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010682hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fga_B Serine/threonine-protei 100.0 1E-136 4E-141 1071.3 36.6 401 80-480 1-402 (403)
2 2npp_B PP2A, B subunit, serine 100.0 1E-137 4E-142 1093.8 28.1 415 72-486 26-441 (449)
3 2jak_A Serine/threonine-protei 100.0 2E-122 7E-127 961.4 35.7 354 72-425 38-392 (392)
4 1ibr_B P95, importin beta-1 su 95.4 0.94 3.2E-05 45.4 18.9 221 209-447 3-249 (462)
5 1qgr_A Protein (importin beta 94.8 5.8 0.0002 43.4 25.9 232 208-445 218-480 (876)
6 2bpt_A Importin beta-1 subunit 94.3 7.6 0.00026 42.4 26.5 232 208-444 225-482 (861)
7 4fdd_A Transportin-1; heat rep 92.9 2.3 8E-05 47.2 17.0 226 209-451 15-251 (852)
8 2qk2_A LP04448P; mini spindles 92.9 2 6.7E-05 40.2 14.1 177 212-395 20-200 (242)
9 1qgr_A Protein (importin beta 92.5 13 0.00043 40.7 22.0 93 349-443 584-678 (876)
10 2bpt_A Importin beta-1 subunit 92.4 2.3 8E-05 46.4 15.9 92 348-443 575-667 (861)
11 2qk1_A Protein STU2; STU2P, XM 92.0 3.7 0.00013 39.3 15.1 181 213-395 22-215 (249)
12 2jdq_A Importin alpha-1 subuni 90.2 11 0.00038 37.4 17.3 235 198-445 98-348 (450)
13 4fdd_A Transportin-1; heat rep 88.0 36 0.0012 37.6 21.1 154 329-486 629-787 (852)
14 1u6g_C TIP120 protein, CAND1; 86.2 15 0.0005 42.6 17.0 248 111-395 20-279 (1230)
15 2x19_B Importin-13; nuclear tr 83.9 19 0.00064 40.3 16.0 203 210-455 689-905 (963)
16 2km4_A Regulator of TY1 transp 83.7 2.2 7.4E-05 37.9 6.6 86 314-399 23-117 (142)
17 4b8j_A Importin subunit alpha- 83.3 29 0.001 35.8 16.2 235 197-445 150-401 (528)
18 1wa5_B Importin alpha subunit; 81.4 27 0.00094 36.1 15.2 230 200-444 166-412 (530)
19 1u6g_C TIP120 protein, CAND1; 80.1 27 0.00094 40.3 15.9 100 344-445 492-599 (1230)
20 1ibr_B P95, importin beta-1 su 79.1 52 0.0018 32.5 17.8 106 314-421 350-458 (462)
21 2of3_A ZYG-9; multifunctional 78.9 19 0.00064 35.4 12.0 104 350-457 67-176 (266)
22 4fu3_A Regulation of nuclear P 77.4 3.4 0.00012 35.9 5.6 87 311-397 21-113 (135)
23 2vgl_B AP-2 complex subunit be 76.9 26 0.0009 37.3 13.6 175 207-396 353-528 (591)
24 4db6_A Armadillo repeat protei 74.5 25 0.00086 31.1 10.9 181 204-396 9-205 (210)
25 4hxt_A De novo protein OR329; 74.2 46 0.0016 29.8 12.8 193 197-397 34-238 (252)
26 1wa5_B Importin alpha subunit; 69.6 66 0.0022 33.2 14.2 224 209-449 89-333 (530)
27 4b8j_A Importin subunit alpha- 66.6 98 0.0034 31.7 14.7 226 209-448 76-319 (528)
28 1sz9_A PCF11 protein; RNA poly 62.4 14 0.00047 32.9 6.2 90 309-398 23-115 (144)
29 1w63_A Adapter-related protein 62.3 1.1E+02 0.0036 32.9 14.5 25 372-396 549-573 (618)
30 2qk1_A Protein STU2; STU2P, XM 61.9 37 0.0013 32.1 9.7 87 352-444 127-220 (249)
31 4hxt_A De novo protein OR329; 58.8 99 0.0034 27.5 18.2 224 209-447 4-244 (252)
32 1w63_A Adapter-related protein 58.1 2E+02 0.0068 30.7 18.6 139 294-449 425-581 (618)
33 4db8_A Armadillo-repeat protei 53.6 1.3E+02 0.0043 27.1 14.8 36 201-236 48-83 (252)
34 4flb_A Regulation of nuclear P 52.8 29 0.00099 29.8 6.5 87 311-397 22-112 (132)
35 2vgl_B AP-2 complex subunit be 51.3 2.1E+02 0.0071 30.2 14.3 30 312-341 204-233 (591)
36 1b3u_A Protein (protein phosph 51.3 2.1E+02 0.0072 29.0 15.4 27 209-235 12-38 (588)
37 2jdq_A Importin alpha-1 subuni 49.5 2E+02 0.0067 28.2 17.9 224 207-447 64-308 (450)
38 3ibv_A Exportin-T; karyopherin 48.9 55 0.0019 37.6 9.8 213 209-443 8-259 (980)
39 3m1i_C Exportin-1; heat repeat 47.8 1.4E+02 0.0049 33.9 13.1 220 204-445 13-264 (1049)
40 3tjz_B Coatomer subunit gamma; 47.4 2.4E+02 0.0082 28.5 15.8 161 262-458 59-219 (355)
41 2vgl_A Adaptor protein complex 47.2 2.4E+02 0.0082 30.3 14.2 83 309-396 493-585 (621)
42 2x1g_F Cadmus; transport prote 47.2 1.5E+02 0.0053 33.0 13.1 29 369-397 827-855 (971)
43 1vdy_A Hypothetical protein (R 44.4 19 0.00066 32.1 4.0 100 338-446 25-132 (140)
44 1wa5_C Importin alpha RE-expor 44.0 3.8E+02 0.013 29.9 22.7 33 206-238 122-154 (960)
45 3u0r_A Apoptosis inhibitor 5; 41.1 3.6E+02 0.012 28.8 16.7 57 326-382 261-323 (507)
46 3m1i_C Exportin-1; heat repeat 40.5 4.4E+02 0.015 29.8 15.7 50 348-397 823-875 (1049)
47 3gjx_A Exportin-1; transport, 40.3 4.2E+02 0.014 30.8 15.4 32 204-235 25-56 (1073)
48 1eyh_A Epsin; superhelix of he 39.3 73 0.0025 28.3 7.1 88 353-443 26-121 (144)
49 3onk_A Epsin-3, ENT3; helix, p 32.8 2E+02 0.007 25.6 8.9 92 353-449 32-132 (150)
50 1wa5_C Importin alpha RE-expor 32.7 5.6E+02 0.019 28.6 17.6 72 283-359 77-153 (960)
51 3ibv_A Exportin-T; karyopherin 32.3 73 0.0025 36.6 7.3 82 210-301 705-787 (980)
52 1oks_A RNA polymerase alpha su 32.2 35 0.0012 25.5 3.0 46 271-318 5-50 (56)
53 3ul1_B Importin subunit alpha- 32.1 4.3E+02 0.015 27.1 16.3 108 196-303 132-244 (510)
54 1xqr_A HSPBP1 protein; armadil 31.7 3.6E+02 0.012 26.1 17.4 63 178-244 56-119 (296)
55 2x1g_F Cadmus; transport prote 28.4 6.4E+02 0.022 27.9 20.4 213 176-395 541-809 (971)
56 3d9j_A RNA-binding protein 16; 28.1 95 0.0032 27.3 5.9 86 311-397 24-119 (145)
57 3gs3_A Symplekin, LD45768P; he 27.4 2.6E+02 0.0088 27.0 9.4 98 314-431 38-143 (257)
58 3opb_A SWI5-dependent HO expre 27.2 7.1E+02 0.024 28.0 14.7 73 179-257 18-106 (778)
59 3bbz_A P protein, phosphoprote 26.5 59 0.002 24.0 3.4 32 79-119 15-46 (49)
60 1x5b_A Signal transducing adap 25.0 3E+02 0.01 24.5 8.8 80 316-395 39-120 (163)
61 3ldz_A STAM-1, signal transduc 20.9 3.2E+02 0.011 23.6 7.8 77 315-395 28-109 (140)
No 1
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=100.00 E-value=1.3e-136 Score=1071.33 Aligned_cols=401 Identities=47% Similarity=0.895 Sum_probs=396.1
Q ss_pred ChHHhHHHHHHHHhcCcccccc-cCCCcCchhHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhHhhccccCCCCCCC
Q 010682 80 SNTQKQNLFVSKLNLCCEVSDF-SDSDKVTAEQDLKRQTLIELADFVSSGSAKFTEPAISGMCKMCSLNLFRVFPPKCRS 158 (504)
Q Consensus 80 ~~~e~~~lf~~Kl~~C~~i~DF-~dp~~d~~~Ke~K~~tL~EL~~~v~~~~~~l~e~~~~~i~~Mi~~NIFR~lP~~~~~ 158 (504)
|++||++||++||++||++||| +||.+|+++||+||+||+||++|++++++++||++|+++++||++||||++||.+++
T Consensus 1 ~~~e~~~lf~~Kl~~C~~ifDF~~d~~~d~~~Ke~Kr~~L~el~~~~~~~~~~lte~~~~~~~~Mi~~NiFR~lPp~~~~ 80 (403)
T 3fga_B 1 PPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSNP 80 (403)
T ss_dssp CCSHHHHHHHHHHHHTTCCCCSSSSTTTTHHHHHHHHHHHHHHHHHHHHSCSCCCTTHHHHHHHHHHHHHCCCCCCCSSC
T ss_pred ChhHHHHHHHHHHHHhCCccCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCC
Confidence 5789999999999999999999 899999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCCCCCCCCCccchhhHHHHHHHHHHHhcCCCChHHhhhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhh
Q 010682 159 NGTGGETEDEEPMFDPAWSHLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKF 238 (504)
Q Consensus 159 ~~~~~d~eedep~~e~sWpHLqlVYeillrfv~s~~~d~~~~k~~id~~Fi~~Ll~lfdSeDprERd~LktiLhrIY~Kf 238 (504)
++..||+|||||++||+|||||+||++|+||++|++++++++|+|||++||++|+++||||||||||+|||+||||||||
T Consensus 81 ~~~~~d~eedep~~e~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf 160 (403)
T 3fga_B 81 TGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKF 160 (403)
T ss_dssp CSTTCCGGGCCCCCCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC
T ss_pred ccccCCccccccccccCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhh
Confidence 77789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhccCCCCcccchhhHHHHHHH
Q 010682 239 MAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQ 318 (504)
Q Consensus 239 ~~~R~fIrk~i~nif~~fi~e~e~hnGIaELLeIlgSIIngfa~PLKeehk~Fl~~vLlPLhk~~~~~~y~~qL~~ci~q 318 (504)
+++|+|||++|+|+|++||||+++||||+|||||+||||||||+|||+||+.||.||||||||+++++.||+||+||++|
T Consensus 161 ~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~q 240 (403)
T 3fga_B 161 LGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQ 240 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcch
Q 010682 319 FIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNE 398 (504)
Q Consensus 319 F~~KDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeiLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N~ 398 (504)
|++|||+|+..+++||+||||+|||+|||+||+||++||+.++|++|++++.|+|++||+|++|+|||||||||++|+|+
T Consensus 241 f~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe 320 (403)
T 3fga_B 241 FLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNE 320 (403)
T ss_dssp HHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCH
T ss_pred HHHhCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhccccccccchHHHHHhhhhcccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 010682 399 HILNLVTHNRQVIIPLVFPALERNTQNHWNQAVLNLTQNVRKILCEMDEELVQACKRKLEEENSTLSVAAERRKLTWERL 478 (504)
Q Consensus 399 ~i~~li~~n~~~I~Pii~paL~~~s~~HWn~~Vr~la~~vlk~l~e~D~~lf~~c~~~~~~~~~~~~~~~~~r~~~W~~l 478 (504)
+|+++|++|++.|+|+|+|+|++++++|||++|+++|++|+++|||||+++|++|+++|+++++++++++++|+++|++|
T Consensus 321 ~i~~li~~n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~~lF~~~~~~~~~~~~~~~~~~~~r~~~W~~~ 400 (403)
T 3fga_B 321 YIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKI 400 (403)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHTTSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HH
Q 010682 479 ES 480 (504)
Q Consensus 479 ~~ 480 (504)
++
T Consensus 401 ~~ 402 (403)
T 3fga_B 401 EN 402 (403)
T ss_dssp SC
T ss_pred hc
Confidence 74
No 2
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=100.00 E-value=1.1e-137 Score=1093.84 Aligned_cols=415 Identities=47% Similarity=0.880 Sum_probs=383.4
Q ss_pred CCCCCCCCChHHhHHHHHHHHhcCcccccc-cCCCcCchhHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhHhhccc
Q 010682 72 PHLSFKDVSNTQKQNLFVSKLNLCCEVSDF-SDSDKVTAEQDLKRQTLIELADFVSSGSAKFTEPAISGMCKMCSLNLFR 150 (504)
Q Consensus 72 ~lp~l~dv~~~e~~~lf~~Kl~~C~~i~DF-~dp~~d~~~Ke~K~~tL~EL~~~v~~~~~~l~e~~~~~i~~Mi~~NIFR 150 (504)
+||+|+|||++|+++||++||++||++||| +||.+|+++||+||+||+||++|++++++++||++|+++++||++||||
T Consensus 26 ~lp~l~d~~~~e~~~lf~~Kl~~C~~ifDF~~dp~~d~~~Ke~Kr~~L~el~~~v~~~~~~lte~i~~~i~~Mi~~NiFR 105 (449)
T 2npp_B 26 VLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFR 105 (449)
T ss_dssp ------------CCCCTTTHHHHHHHHHHHCCCCSSSCCCCCSHHHHHHHHHHHHHSSCCSCCCSSCCHHHHHHHHHHCC
T ss_pred CCCCCCCCChHHHHHHHHHHHHHhCCeeCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHhcCCCChHHhhhcCCHHHHHHHHhhcCCCChHHHHHHHHH
Q 010682 151 VFPPKCRSNGTGGETEDEEPMFDPAWSHLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTV 230 (504)
Q Consensus 151 ~lP~~~~~~~~~~d~eedep~~e~sWpHLqlVYeillrfv~s~~~d~~~~k~~id~~Fi~~Ll~lfdSeDprERd~Lkti 230 (504)
++||.+++++..||+|||||++||+|||||+||++|+|||+|++++++++|+|||++||++|+++||||||||||+||++
T Consensus 106 ~lPp~~~~~~~~~d~eedep~~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~Lkti 185 (449)
T 2npp_B 106 TLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTT 185 (449)
T ss_dssp CCCCCSSCCSSSSCGGGCCCCCCTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHH
T ss_pred CCCCCCCcccccCCCccccccccccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 99999888767799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhcchHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhccCCCCcccchh
Q 010682 231 LHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQ 310 (504)
Q Consensus 231 LhrIY~Kf~~~R~fIrk~i~nif~~fi~e~e~hnGIaELLeIlgSIIngfa~PLKeehk~Fl~~vLlPLhk~~~~~~y~~ 310 (504)
||||||||+++|+|||++|+|+|++||||+++||||+|||||+|||||||++|||+||+.||.+||||||++++++.||+
T Consensus 186 LhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~ 265 (449)
T 2npp_B 186 LHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHP 265 (449)
T ss_dssp HHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHHH
Q 010682 311 QLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAER 390 (504)
Q Consensus 311 qL~~ci~qF~~KDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeiLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAEr 390 (504)
||+||++||++|||+|+..|++||+||||+|||+|||+||+||++||+.++|++|+++++|+|++||+|++|+|||||||
T Consensus 266 qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAEr 345 (449)
T 2npp_B 266 QLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAER 345 (449)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchhHHHHhhhccccccccchHHHHHhhhhcccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhhhHHHHHHH
Q 010682 391 AHLLWNNEHILNLVTHNRQVIIPLVFPALERNTQNHWNQAVLNLTQNVRKILCEMDEELVQACKRKLEEENSTLSVAAER 470 (504)
Q Consensus 391 AL~~w~N~~i~~li~~n~~~I~Pii~paL~~~s~~HWn~~Vr~la~~vlk~l~e~D~~lf~~c~~~~~~~~~~~~~~~~~ 470 (504)
||++|+|++|+++|++|++.|+|+|+|+|++++++|||++||++|++|+++|+||||++|++|+++|+++++++++++++
T Consensus 346 AL~~w~N~~i~~li~~n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e~d~~lf~~c~~~~~~~~~~~~~~~~~ 425 (449)
T 2npp_B 346 ALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKE 425 (449)
T ss_dssp HHGGGGCHHHHHHHHTTHHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHCCHHHHHHHHhchhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCC
Q 010682 471 RKLTWERLESAASFQP 486 (504)
Q Consensus 471 r~~~W~~l~~~A~~~~ 486 (504)
|+++|++|+++|++++
T Consensus 426 r~~~W~~i~~~A~~~~ 441 (449)
T 2npp_B 426 REEAWVKIENLAKANP 441 (449)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHhCC
Confidence 9999999999999887
No 3
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=100.00 E-value=2e-122 Score=961.37 Aligned_cols=354 Identities=50% Similarity=0.929 Sum_probs=325.2
Q ss_pred CCCCCCCCChHHhHHHHHHHHhcCcccccc-cCCCcCchhHHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhHhhccc
Q 010682 72 PHLSFKDVSNTQKQNLFVSKLNLCCEVSDF-SDSDKVTAEQDLKRQTLIELADFVSSGSAKFTEPAISGMCKMCSLNLFR 150 (504)
Q Consensus 72 ~lp~l~dv~~~e~~~lf~~Kl~~C~~i~DF-~dp~~d~~~Ke~K~~tL~EL~~~v~~~~~~l~e~~~~~i~~Mi~~NIFR 150 (504)
+||+|+|++++|+++||++||++||++||| +||.+|+++||+||+||+||++|++++++++||++++++++||++||||
T Consensus 38 ~lp~l~d~~~~e~~~lf~~Kl~~C~~ifDF~~dp~~d~~~Ke~Kr~~L~el~~~v~~~~~~lte~i~~~i~~Mi~~NiFR 117 (392)
T 2jak_A 38 VLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFR 117 (392)
T ss_dssp ----CCCCC-CSCSHHHHHHHHHTTCCCCCSSCSSSSHHHHHHHHHHHHHHHHHHTTCCSCCCTTHHHHHHHHHHHHHCS
T ss_pred CCCCCCCCChHHHHHHHHHHHHHhCCeeCCCCCcchhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHhcCCCChHHhhhcCCHHHHHHHHhhcCCCChHHHHHHHHH
Q 010682 151 VFPPKCRSNGTGGETEDEEPMFDPAWSHLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTV 230 (504)
Q Consensus 151 ~lP~~~~~~~~~~d~eedep~~e~sWpHLqlVYeillrfv~s~~~d~~~~k~~id~~Fi~~Ll~lfdSeDprERd~Lkti 230 (504)
++||.+++.+..||+|||||+.|++|||||+||++|+||++|++++++++|+|||++||.+|+++||||||||||+||++
T Consensus 118 ~lPp~~~~~~~~~d~eedep~~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~Lkti 197 (392)
T 2jak_A 118 TLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTT 197 (392)
T ss_dssp CCCC---------------CCCCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CCCCCCCcccccCCccccccccccCChhHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 99998887666799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhcchHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhccCCCCcccchh
Q 010682 231 LHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQ 310 (504)
Q Consensus 231 LhrIY~Kf~~~R~fIrk~i~nif~~fi~e~e~hnGIaELLeIlgSIIngfa~PLKeehk~Fl~~vLlPLhk~~~~~~y~~ 310 (504)
||||||||+++|+|||++|+|+|++||||+++||||+|||||+||||||||+|||+||++||.++|||||++++++.||+
T Consensus 198 LhrIY~Kf~~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~ 277 (392)
T 2jak_A 198 LHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHP 277 (392)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCcHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHHH
Q 010682 311 QLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAER 390 (504)
Q Consensus 311 qL~~ci~qF~~KDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeiLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAEr 390 (504)
||+||++||++|||+|++.|++||+||||+|||+|||+||+||++||+.+++++|++++.|+|++||+|++|+|||||||
T Consensus 278 qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~hfqVAEr 357 (392)
T 2jak_A 278 QLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAER 357 (392)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchhHHHHhhhccccccccchHHHHHhhhh
Q 010682 391 AHLLWNNEHILNLVTHNRQVIIPLVFPALERNTQN 425 (504)
Q Consensus 391 AL~~w~N~~i~~li~~n~~~I~Pii~paL~~~s~~ 425 (504)
||++|+|++|+++|++|+++|+|+|||+|++++++
T Consensus 358 AL~~wnNe~i~~li~~n~~~ilPii~~~L~~~s~~ 392 (392)
T 2jak_A 358 ALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKT 392 (392)
T ss_dssp HHGGGGCHHHHHHHHHTHHHHTTTSCC--------
T ss_pred HHHHhCcHHHHHHHHhhhccchhhhhHHHHHHhcC
Confidence 99999999999999999999999999999999874
No 4
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=95.37 E-value=0.94 Score=45.45 Aligned_cols=221 Identities=11% Similarity=0.057 Sum_probs=125.4
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhhh-hhc-------------chHHHHHHHHHHHHHhhhcccCCcChHHHHHHHH
Q 010682 209 IVRLLDLFDSEDPRERDCLKTVLHRIYGK-FMA-------------HRQFIRQAVCNIIYRFVFETERHNGIAELLEIFG 274 (504)
Q Consensus 209 i~~Ll~lfdSeDprERd~LktiLhrIY~K-f~~-------------~R~fIrk~i~nif~~fi~e~e~hnGIaELLeIlg 274 (504)
+.++|..+.|+|+..|......|..+... ..+ ..+-+|....-.|-+++..... .+-.+...
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~-~~~~~~~~--- 78 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDP-DIKAQYQQ--- 78 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSH-HHHHHHHH---
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccch-HHHHHHHh---
Confidence 46778888899999998888877765431 111 1222333333333333311000 00000000
Q ss_pred HHHhccCCCchHHHHHHHHHHHhhccCCCCcccchhhHHHHHHHHHhcC------CCcHHHHHHHhhhhCCCC--CChhH
Q 010682 275 SIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKD------PKLATNAIKGLLKYWPVT--NSQKE 346 (504)
Q Consensus 275 SIIngfa~PLKeehk~Fl~~vLlPLhk~~~~~~y~~qL~~ci~qF~~KD------p~La~~vi~~LLk~WP~t--ns~KE 346 (504)
. + ..+.++.+..+...|+++.....-.. .++..|+..+...+ |.+...++..+- -. +....
T Consensus 79 -~---~-~~l~~~~~~~ik~~ll~~l~~~~~~v--~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~----~~~~~~~~r 147 (462)
T 1ibr_B 79 -R---W-LAIDANARREVKNYVLQTLGTETYRP--SSASQCVAGIACAEIPVNQWPELIPQLVANVT----NPNSTEHMK 147 (462)
T ss_dssp -H---H-HTSCHHHHHHHHHHHHHHTTCCCSSS--CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHH----CTTCCHHHH
T ss_pred -h---h-hcCCHHHHHHHHHHHHHHhCCCCchh--hHHHHHHHHHHHHhccccccHHHHHHHHHHhc----cCCCCHHHH
Confidence 0 1 23567788888899999887766544 78999988886543 344444444442 22 33334
Q ss_pred hHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCC--cHHHHHHHHHhhcchhHHHHhhhccc--cccccchHHHHHh
Q 010682 347 LMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSS--HYQVAERAHLLWNNEHILNLVTHNRQ--VIIPLVFPALERN 422 (504)
Q Consensus 347 vlFL~eleeiLe~~~~~~f~~i~~~lF~~ia~cl~S~--hfqVAErAL~~w~N~~i~~li~~n~~--~I~Pii~paL~~~ 422 (504)
..-+.-+..+.+...++.+......++..+..+++++ +..|-..|+..+.+ ++..+..+.. ...+.+.+.+.+.
T Consensus 148 ~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~ 225 (462)
T 1ibr_B 148 ESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLN--SLEFTKANFDKESERHFIMQVVCEA 225 (462)
T ss_dssp HHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH--HTTTTHHHHTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--HHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 4556677777776656556667778999999999998 77777777655433 0011111110 0112234444443
Q ss_pred hhhcccHHHHHHHHHHHHHHHHhCH
Q 010682 423 TQNHWNQAVLNLTQNVRKILCEMDE 447 (504)
Q Consensus 423 s~~HWn~~Vr~la~~vlk~l~e~D~ 447 (504)
. .+=+..+|..+..++..+.+..+
T Consensus 226 ~-~~~~~~vr~~~~~~l~~l~~~~~ 249 (462)
T 1ibr_B 226 T-QCPDTRVRVAALQNLVKIMSLYY 249 (462)
T ss_dssp T-TCSSHHHHHHHHHHHHHHHHHCG
T ss_pred c-CCCCHHHHHHHHHHHHHHHHHHH
Confidence 3 33467888888888888876554
No 5
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=94.82 E-value=5.8 Score=43.37 Aligned_cols=232 Identities=10% Similarity=0.061 Sum_probs=126.8
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhhhhhc-chHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhccC-----
Q 010682 208 FIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMA-HRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFA----- 281 (504)
Q Consensus 208 Fi~~Ll~lfdSeDprERd~LktiLhrIY~Kf~~-~R~fIrk~i~nif~~fi~e~e~hnGIaELLeIlgSIIngfa----- 281 (504)
++.-|...+.++|++.|...-.+|.++...+.. .++++.+.+-..+...... ....-....++++..+.....
T Consensus 218 il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~v~~~al~~l~~l~~~~~~~~~~ 296 (876)
T 1qgr_A 218 IMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS-DIDEVALQGIEFWSNVCDEEMDLAIE 296 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHhHhhh
Confidence 455566777888999998888888877654432 3555552222333332211 111113345666665553210
Q ss_pred ---------C---CchH---HHHHHHHHHHhhccCCC-------CcccchhhHHHHHHHHHhcCC-CcHHHHHHHhhhhC
Q 010682 282 ---------L---PLKE---EHKIFLCRALIPLHKPK-------SVGIYHQQLTYCVVQFIDKDP-KLATNAIKGLLKYW 338 (504)
Q Consensus 282 ---------~---PLKe---ehk~Fl~~vLlPLhk~~-------~~~~y~~qL~~ci~qF~~KDp-~La~~vi~~LLk~W 338 (504)
. +... .|..-+...++.+.... .. .....-..|+....+..+ .+...++..+....
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~-~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l 375 (876)
T 1qgr_A 297 ASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDW-NPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHI 375 (876)
T ss_dssp HHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCC-CHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHT
T ss_pred hccccccCCCccchhHHHHHHHHHHHhHHHHHHhhccccccccccc-HHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHc
Confidence 0 1111 11111223333333211 11 111122334433333222 34556666655554
Q ss_pred CCCCChhHhHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcchhHHHHhhhc--cccccccch
Q 010682 339 PVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTHN--RQVIIPLVF 416 (504)
Q Consensus 339 P~tns~KEvlFL~eleeiLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i~~li~~n--~~~I~Pii~ 416 (504)
--.+....-.-+.-+..+.+.+.++.+......+...+-.+++++|..|-.+|+..+.+ +...+... ....++.++
T Consensus 376 ~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~--~~~~~~~~~~~~~~l~~~l 453 (876)
T 1qgr_A 376 KNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGR--ICELLPEAAINDVYLAPLL 453 (876)
T ss_dssp TCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHH--HHHHCGGGTSSTTTHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HHHhCchhcccHHHHHHHH
Confidence 33444444445666777777777777777778888899999999999999998877643 33333321 234566777
Q ss_pred HHHHHhhhhcccHHHHHHHHHHHHHHHHh
Q 010682 417 PALERNTQNHWNQAVLNLTQNVRKILCEM 445 (504)
Q Consensus 417 paL~~~s~~HWn~~Vr~la~~vlk~l~e~ 445 (504)
+.|.+....+ ..|+..+..++..+.+.
T Consensus 454 ~~l~~~l~~~--~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 454 QCLIEGLSAE--PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHHHHTTSC--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC--HHHHHHHHHHHHHHHHH
Confidence 7777766553 77888877777766643
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=94.27 E-value=7.6 Score=42.35 Aligned_cols=232 Identities=13% Similarity=0.108 Sum_probs=126.9
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhhhhhc-chHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhccC-----
Q 010682 208 FIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMA-HRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFA----- 281 (504)
Q Consensus 208 Fi~~Ll~lfdSeDprERd~LktiLhrIY~Kf~~-~R~fIrk~i~nif~~fi~e~e~hnGIaELLeIlgSIIngfa----- 281 (504)
++..|...+.++|++.|...-.+|.++...+.. ..+++.+.+-..+...+... ...-....+++++.+.....
T Consensus 225 ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~ 303 (861)
T 2bpt_A 225 LMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP-NDKVASMTVEFWSTICEEEIDIAYE 303 (861)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 344566778899999999888888888665543 44556533434444444321 22223456777777764310
Q ss_pred ------CC-----chHHHHHHHHHHHhhccCCCCc----ccc--hhhHHHHHHHHHhcCC-CcHHHHHHHhhhhCCCCCC
Q 010682 282 ------LP-----LKEEHKIFLCRALIPLHKPKSV----GIY--HQQLTYCVVQFIDKDP-KLATNAIKGLLKYWPVTNS 343 (504)
Q Consensus 282 ------~P-----LKeehk~Fl~~vLlPLhk~~~~----~~y--~~qL~~ci~qF~~KDp-~La~~vi~~LLk~WP~tns 343 (504)
.| .-..+...+..+++...+...- ..+ ...-..|+..+....+ .....++..+...--..+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~ 383 (861)
T 2bpt_A 304 LAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNW 383 (861)
T ss_dssp HHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSH
T ss_pred hhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCCh
Confidence 00 0011112233344444332110 011 1122334433333222 3444555555443322333
Q ss_pred hhHhHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcchhHHHHhhhc--cccccccchHHHHH
Q 010682 344 QKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTHN--RQVIIPLVFPALER 421 (504)
Q Consensus 344 ~KEvlFL~eleeiLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i~~li~~n--~~~I~Pii~paL~~ 421 (504)
...-.-+.-+..+.+.+.++.+...+..+...+..++.++|..|-++|+..+. .+...+... ....++.++|.|.+
T Consensus 384 ~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~--~l~~~~~~~~~~~~~~~~~l~~l~~ 461 (861)
T 2bpt_A 384 RNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIG--RIADSVAESIDPQQHLPGVVQACLI 461 (861)
T ss_dssp HHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHH--HHHHHHGGGSCTTTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH--HHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 33333455677777777778888888889999999999999999988876543 233333222 13345666777766
Q ss_pred hhhhcccHHHHHHHHHHHHHHHH
Q 010682 422 NTQNHWNQAVLNLTQNVRKILCE 444 (504)
Q Consensus 422 ~s~~HWn~~Vr~la~~vlk~l~e 444 (504)
..... ..||..+..++..+.+
T Consensus 462 ~l~~~--~~v~~~a~~al~~l~~ 482 (861)
T 2bpt_A 462 GLQDH--PKVATNCSWTIINLVE 482 (861)
T ss_dssp HHTSC--HHHHHHHHHHHHHHHH
T ss_pred HhccC--hHHHHHHHHHHHHHHH
Confidence 65554 6788887777765554
No 7
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=92.90 E-value=2.3 Score=47.21 Aligned_cols=226 Identities=11% Similarity=0.042 Sum_probs=125.4
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHhhhcccCCcChHHH-HHHHHHHHhccCCCchHH
Q 010682 209 IVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAEL-LEIFGSIISGFALPLKEE 287 (504)
Q Consensus 209 i~~Ll~lfdSeDprERd~LktiLhrIY~Kf~~~R~fIrk~i~nif~~fi~e~e~hnGIaEL-LeIlgSIIngfa~PLKee 287 (504)
+.+++....|+|+..|......|..++.. .+. -.....++... +.....+--+ .-.|...|+..-.++.++
T Consensus 15 l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~-p~~----~~~l~~il~~~---~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~ 86 (852)
T 4fdd_A 15 ILQLLKESQSPDTTIQRTVQQKLEQLNQY-PDF----NNYLIFVLTKL---KSEDEPTRSLSGLILKNNVKAHFQNFPNG 86 (852)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHTTS-HHH----HHHHHHHHHTC---TTSCHHHHHHHHHHHHHHTTTSGGGCCHH
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHHHhC-CCH----HHHHHHHHhcc---CCCChHHHHHHHHHHHHHHHHccCCCCHH
Confidence 45566666788999999988888776531 111 11111111100 1111111000 112223333322356788
Q ss_pred HHHHHHHHHhhccCCCCcccchhhHHHHHHHHHhcC-----CCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHhhCCh
Q 010682 288 HKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKD-----PKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSM 362 (504)
Q Consensus 288 hk~Fl~~vLlPLhk~~~~~~y~~qL~~ci~qF~~KD-----p~La~~vi~~LLk~WP~tns~KEvlFL~eleeiLe~~~~ 362 (504)
.+..+...|+++...+. ..-..++..|+......| |.+...++.. +-..+..-.-.-+.-+..+++..++
T Consensus 87 ~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~----l~~~~~~~r~~al~~L~~i~~~~~~ 161 (852)
T 4fdd_A 87 VTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGELQNWPDLLPKLCSL----LDSEDYNTCEGAFGALQKICEDSAE 161 (852)
T ss_dssp HHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHH----HSCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCccccHHHHHHHHHH----HcCCCHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999877543 344667889998888766 3343333333 3233333233345555566655443
Q ss_pred HHHHH-----HHHHHHHHHHHhhCCCcHHHHHHHHHhhcchhHHHHhhhccccccccchHHHHHhhhhcccHHHHHHHHH
Q 010682 363 AEFQK-----IMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTHNRQVIIPLVFPALERNTQNHWNQAVLNLTQN 437 (504)
Q Consensus 363 ~~f~~-----i~~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i~~li~~n~~~I~Pii~paL~~~s~~HWn~~Vr~la~~ 437 (504)
. +.. ....++..+.+++++++..|-..|+....+ ++....+.-...++-+++.+.+.... =+..||..+..
T Consensus 162 ~-~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~--~~~~~~~~~~~~~~~~l~~l~~~~~d-~~~~vr~~a~~ 237 (852)
T 4fdd_A 162 I-LDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQ--FIISRTQALMLHIDSFIENLFALAGD-EEPEVRKNVCR 237 (852)
T ss_dssp H-HHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHT--TTTTTCHHHHTSHHHHHHHHHHHHTC-CCHHHHHHHHH
T ss_pred H-hchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--HHhcccHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHH
Confidence 2 221 245566777788899999998888765542 11111111112234455666554432 36789999999
Q ss_pred HHHHHHHhCHHHHH
Q 010682 438 VRKILCEMDEELVQ 451 (504)
Q Consensus 438 vlk~l~e~D~~lf~ 451 (504)
++..+.+..|+.+.
T Consensus 238 ~L~~l~~~~~~~~~ 251 (852)
T 4fdd_A 238 ALVMLLEVRMDRLL 251 (852)
T ss_dssp HHHHHHHHCHHHHG
T ss_pred HHHHHHHhCHHHHH
Confidence 99999988876543
No 8
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=92.85 E-value=2 Score=40.19 Aligned_cols=177 Identities=11% Similarity=0.042 Sum_probs=113.5
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHhhh---hhcchHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhccCCCchHHH
Q 010682 212 LLDLFDSEDPRERDCLKTVLHRIYGK---FMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEH 288 (504)
Q Consensus 212 Ll~lfdSeDprERd~LktiLhrIY~K---f~~~R~fIrk~i~nif~~fi~e~e~hnGIaELLeIlgSIIngfa~PLKeeh 288 (504)
+++.++|.|.+||...-.-|..+-.. +.. ..+. .+.+.+...+.......-....+..+|.+..+....+.. |
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~--~~~~-~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~-~ 95 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLEN--GEYG-ALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN-Y 95 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCC--CCCH-HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH-H
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCC--CCHH-HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH-H
Confidence 56677899999998877777766433 221 1111 223334443421223333456788888888776544433 3
Q ss_pred HHHHHHHHhhccCCCCcccchhhHHHHHHHHHhcCCCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHhhCChH-HHHH
Q 010682 289 KIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMA-EFQK 367 (504)
Q Consensus 289 k~Fl~~vLlPLhk~~~~~~y~~qL~~ci~qF~~KDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeiLe~~~~~-~f~~ 367 (504)
..-+...|+...+.+.-. -.+....++..+++.-+ ...++..++...--.|+.=...-+.-|..++....|+ .+..
T Consensus 96 ~~~ilp~ll~~l~d~~~~-vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~ 172 (242)
T 2qk2_A 96 ASACVPSLLEKFKEKKPN-VVTALREAIDAIYASTS--LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKK 172 (242)
T ss_dssp HHHHHHHHHHGGGCCCHH-HHHHHHHHHHHHHTTSC--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHH
T ss_pred HHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHH
Confidence 333456666666655432 24556777777776533 4567777777776667766667788899888887765 3566
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHhh
Q 010682 368 IMVPLFRRIGCCLNSSHYQVAERAHLLW 395 (504)
Q Consensus 368 i~~~lF~~ia~cl~S~hfqVAErAL~~w 395 (504)
.+..+...+..|++..+..|=+.|....
T Consensus 173 ~l~~l~p~l~~~l~D~~~~VR~~A~~~l 200 (242)
T 2qk2_A 173 LLKLLTTSLVKTLNEPDPTVRDSSAEAL 200 (242)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 7788889999999999998888887554
No 9
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=92.51 E-value=13 Score=40.70 Aligned_cols=93 Identities=15% Similarity=0.099 Sum_probs=53.1
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCc--HHHHHHHHHhhcchhHHHHhhhccccccccchHHHHHhhhhc
Q 010682 349 FISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSH--YQVAERAHLLWNNEHILNLVTHNRQVIIPLVFPALERNTQNH 426 (504)
Q Consensus 349 FL~eleeiLe~~~~~~f~~i~~~lF~~ia~cl~S~h--fqVAErAL~~w~N~~i~~li~~n~~~I~Pii~paL~~~s~~H 426 (504)
.+.-+..+...++.+.|...+..++..+..++++.+ ..|-+.|+..+.+ +.......-...++.++|.+......+
T Consensus 584 ~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~--l~~~~~~~~~~~~~~~~~~l~~~l~~~ 661 (876)
T 1qgr_A 584 LCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVST--LVEVLGGEFLKYMEAFKPFLGIGLKNY 661 (876)
T ss_dssp HHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHH--HHHHHGGGGGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHH--HHHHHHhhHHHHHHHHHHHHHHHHcCc
Confidence 345566666667657788888889999998888874 2566777766532 222222222223344556555554443
Q ss_pred ccHHHHHHHHHHHHHHH
Q 010682 427 WNQAVLNLTQNVRKILC 443 (504)
Q Consensus 427 Wn~~Vr~la~~vlk~l~ 443 (504)
=+..||..+..++..+.
T Consensus 662 ~~~~vr~~a~~~l~~l~ 678 (876)
T 1qgr_A 662 AEYQVCLAAVGLVGDLC 678 (876)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH
Confidence 35667777776666554
No 10
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=92.38 E-value=2.3 Score=46.43 Aligned_cols=92 Identities=9% Similarity=0.034 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcH-HHHHHHHHhhcchhHHHHhhhccccccccchHHHHHhhhhc
Q 010682 348 MFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHY-QVAERAHLLWNNEHILNLVTHNRQVIIPLVFPALERNTQNH 426 (504)
Q Consensus 348 lFL~eleeiLe~~~~~~f~~i~~~lF~~ia~cl~S~hf-qVAErAL~~w~N~~i~~li~~n~~~I~Pii~paL~~~s~~H 426 (504)
..+.-+..++..+++ ++......++..+...+++.+. .|-+.++..+. .+.......-...+|.++|.|.+.. ++
T Consensus 575 ~~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~--~l~~~~~~~~~~~l~~i~~~l~~~l-~~ 650 (861)
T 2bpt_A 575 NILTVLAAVIRKSPS-SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAIS--ALAASLGKGFEKYLETFSPYLLKAL-NQ 650 (861)
T ss_dssp HHHHHHHHHHHHCGG-GTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHH--HHHHHHGGGGHHHHHHHHHHHHHHH-HC
T ss_pred HHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHH--HHHHHHhhhHHHHHHHHHHHHHHHh-cc
Confidence 345566666666654 4556667788888888877766 67777776663 2333333222233445555555443 22
Q ss_pred ccHHHHHHHHHHHHHHH
Q 010682 427 WNQAVLNLTQNVRKILC 443 (504)
Q Consensus 427 Wn~~Vr~la~~vlk~l~ 443 (504)
=+..+|..+..++..+.
T Consensus 651 ~~~~vr~~a~~~l~~l~ 667 (861)
T 2bpt_A 651 VDSPVSITAVGFIADIS 667 (861)
T ss_dssp TTSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 23346666666655443
No 11
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=92.04 E-value=3.7 Score=39.32 Aligned_cols=181 Identities=9% Similarity=0.071 Sum_probs=119.7
Q ss_pred HhhcCCCChHHHHHHHHHHHH-Hhh---hhhcchHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhccC-CCchHH
Q 010682 213 LDLFDSEDPRERDCLKTVLHR-IYG---KFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFA-LPLKEE 287 (504)
Q Consensus 213 l~lfdSeDprERd~LktiLhr-IY~---Kf~~~R~fIrk~i~nif~~fi~e~e~hnGIaELLeIlgSIIngfa-~PLKee 287 (504)
.+.+.|.|.+||...-.-|.. +-. +...+..-. ..+-+.+...+-...+..-+...++.+|.+.+|+. -.+...
T Consensus 22 ~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~-~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 22 QERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNY-SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 344578999999877776766 642 222100000 01122233333122233335677999999999987 555413
Q ss_pred HHHHHHHHHhhccCCCCcccchhhHHHHHHHHHhcC-C----CcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHhhCCh
Q 010682 288 HKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKD-P----KLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSM 362 (504)
Q Consensus 288 hk~Fl~~vLlPLhk~~~~~~y~~qL~~ci~qF~~KD-p----~La~~vi~~LLk~WP~tns~KEvlFL~eleeiLe~~~~ 362 (504)
|..-+.-.|+..++-+.-.. .....+++..+++.- | .-.+.++..|+..+-..|++=....+.-|..+++....
T Consensus 101 y~~~llp~ll~~l~dkk~~V-~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKEKKPSV-IEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHGGGCCCHHH-HHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 44445667777777765322 456788888888743 2 11346777787777766777777889999999987764
Q ss_pred --HHHHHHH-HHHHHHHHHhhCCCcHHHHHHHHHhh
Q 010682 363 --AEFQKIM-VPLFRRIGCCLNSSHYQVAERAHLLW 395 (504)
Q Consensus 363 --~~f~~i~-~~lF~~ia~cl~S~hfqVAErAL~~w 395 (504)
..|.+.+ ..+...+.+|+...+-.|=+.|...+
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l 215 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESF 215 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 8898888 89999999999999999988888665
No 12
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=90.24 E-value=11 Score=37.44 Aligned_cols=235 Identities=10% Similarity=0.044 Sum_probs=119.6
Q ss_pred HHhhhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhhhcchHHHH-HHHHHHHHHhhhcccCCcChHHHHHHHHHH
Q 010682 198 KVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIR-QAVCNIIYRFVFETERHNGIAELLEIFGSI 276 (504)
Q Consensus 198 ~~~k~~id~~Fi~~Ll~lfdSeDprERd~LktiLhrIY~Kf~~~R~fIr-k~i~nif~~fi~e~e~hnGIaELLeIlgSI 276 (504)
...+..++...+..|+.++.++|+.-|...-..|..+-......|..+. ..+-..+.+++.......-....+..|+.+
T Consensus 98 ~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l 177 (450)
T 2jdq_A 98 LQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNL 177 (450)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 3334455556888999999999999999999999888665444454432 234455666664322222234556777777
Q ss_pred HhccCCCchHHHHHHHHHHHhhccCCCCcccchhhHHHHHHHHHhcC---------CCcHHHHHHHhhhhCCCCCChhHh
Q 010682 277 ISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKD---------PKLATNAIKGLLKYWPVTNSQKEL 347 (504)
Q Consensus 277 Ingfa~PLKeehk~Fl~~vLlPLhk~~~~~~y~~qL~~ci~qF~~KD---------p~La~~vi~~LLk~WP~tns~KEv 347 (504)
..+-....+.....-....|+.+.+...-.. ......++..+...+ ..+.+.+++.|- ..+..-..
T Consensus 178 ~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v-~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~----~~~~~v~~ 252 (450)
T 2jdq_A 178 CRGKSPPPEFAKVSPCLNVLSWLLFVSDTDV-LADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM----HNDYKVVS 252 (450)
T ss_dssp HCCSSSCCCGGGTGGGHHHHHHHTTCCCHHH-HHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTT----CSCHHHHH
T ss_pred hCCCCCCCCHHHHHHHHHHHHHHHccCCHHH-HHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHC----CCchhHHH
Confidence 7553111111111223445555555432111 112222333332222 234444444332 22222222
Q ss_pred HHHHHHHHHHhhCChHHHHHHH-HHHHHHHHHhhCCCcHHHHHHHHHhhcc-----hhHHHHhhhccccccccchHHHHH
Q 010682 348 MFISELEEVLEMTSMAEFQKIM-VPLFRRIGCCLNSSHYQVAERAHLLWNN-----EHILNLVTHNRQVIIPLVFPALER 421 (504)
Q Consensus 348 lFL~eleeiLe~~~~~~f~~i~-~~lF~~ia~cl~S~hfqVAErAL~~w~N-----~~i~~li~~n~~~I~Pii~paL~~ 421 (504)
.-+.-|..+... .+...+.+. ..+...|..++.+++..|-+.|+....| +.....+.+ ..++|.++..|.
T Consensus 253 ~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~~l~- 328 (450)
T 2jdq_A 253 PALRAVGNIVTG-DDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVID--ANIFPALISILQ- 328 (450)
T ss_dssp HHHHHHHHHTTS-CHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHHHH-
T ss_pred HHHHHHHHHhhC-ChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--CCCHHHHHHHHh-
Confidence 223333333322 122222222 2467788888999999998888866543 111111111 234555555442
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHh
Q 010682 422 NTQNHWNQAVLNLTQNVRKILCEM 445 (504)
Q Consensus 422 ~s~~HWn~~Vr~la~~vlk~l~e~ 445 (504)
+=+..||..|..++.-+..-
T Consensus 329 ----~~~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 329 ----TAEFRTRKEAAWAITNATSG 348 (450)
T ss_dssp ----HSCHHHHHHHHHHHHHHHHH
T ss_pred ----cCCHHHHHHHHHHHHHHHcC
Confidence 23567888777777766543
No 13
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=88.04 E-value=36 Score=37.60 Aligned_cols=154 Identities=14% Similarity=0.086 Sum_probs=93.4
Q ss_pred HHHHHhhhhCCCCCChhHhHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcchhHHHHhhhcc
Q 010682 329 NAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTHNR 408 (504)
Q Consensus 329 ~vi~~LLk~WP~tns~KEvlFL~eleeiLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i~~li~~n~ 408 (504)
.++..++..|.-.++.=.-....-+.++...++ ++|...+..+...+.+.++...+.|...|.... -.+...+...-
T Consensus 629 ~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~al--g~i~~~~~~~~ 705 (852)
T 4fdd_A 629 NILTLMYQCMQDKMPEVRQSSFALLGDLTKACF-QHVKPCIADFMPILGTNLNPEFISVCNNATWAI--GEISIQMGIEM 705 (852)
T ss_dssp CHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG-GGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHH--HHHHHHHGGGG
T ss_pred cHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHcCccchHHHHHHHHHH--HHHHHHhhHhH
Confidence 356667777755444444456677788777765 578888888999999999888888866655443 33434443333
Q ss_pred ccccccchHHHHHhhhh-cccHHHHHHHHHHHHHHHHhCHHHH----HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Q 010682 409 QVIIPLVFPALERNTQN-HWNQAVLNLTQNVRKILCEMDEELV----QACKRKLEEENSTLSVAAERRKLTWERLESAAS 483 (504)
Q Consensus 409 ~~I~Pii~paL~~~s~~-HWn~~Vr~la~~vlk~l~e~D~~lf----~~c~~~~~~~~~~~~~~~~~r~~~W~~l~~~A~ 483 (504)
...++.+++.|.+..++ .-+.+++..+..++--|....|... .++...+-..-.. .....++...-+.+-....
T Consensus 706 ~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~-~~d~~e~~~a~~~l~~li~ 784 (852)
T 4fdd_A 706 QPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRN-IRDNEEKDSAFRGICTMIS 784 (852)
T ss_dssp GGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHT-SCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhcc-ccccHHHHHHHHHHHHHHH
Confidence 44445566666655432 5678899888888888888887754 3333333221111 0112234455555555555
Q ss_pred cCC
Q 010682 484 FQP 486 (504)
Q Consensus 484 ~~~ 486 (504)
.++
T Consensus 785 ~~p 787 (852)
T 4fdd_A 785 VNP 787 (852)
T ss_dssp HCG
T ss_pred hCh
Confidence 555
No 14
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=86.19 E-value=15 Score=42.61 Aligned_cols=248 Identities=13% Similarity=0.109 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCChHhHHHHHHHhHhhccccCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHH
Q 010682 111 QDLKRQTLIELADFVSSGSAKFTEPAISGMCKMCSLNLFRVFPPKCRSNGTGGETEDEEPMFDPAWSHLQIVYDLLLRFV 190 (504)
Q Consensus 111 Ke~K~~tL~EL~~~v~~~~~~l~e~~~~~i~~Mi~~NIFR~lP~~~~~~~~~~d~eedep~~e~sWpHLqlVYeillrfv 190 (504)
++++++++.+|.+.+......+++.....++..+- +.+. ++.|..-+.....+..++
T Consensus 20 ~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll----~~L~-------------------d~~~~vR~~A~~~L~~l~ 76 (1230)
T 1u6g_C 20 KDFRFMATNDLMTELQKDSIKLDDDSERKVVKMIL----KLLE-------------------DKNGEVQNLAVKCLGPLV 76 (1230)
T ss_dssp HHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHH----HHTT-------------------CSSHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHH----HHhc-------------------CCCHHHHHHHHHHHHHHH
Confidence 57789999999999877655566555555554432 2221 234555566666666665
Q ss_pred hcCCCChHHhhhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhhhcc------hHHHHHHHHHHHHHhhhcccCCc
Q 010682 191 SYGSLDVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAH------RQFIRQAVCNIIYRFVFETERHN 264 (504)
Q Consensus 191 ~s~~~d~~~~k~~id~~Fi~~Ll~lfdSeDprERd~LktiLhrIY~Kf~~~------R~fIrk~i~nif~~fi~e~e~hn 264 (504)
.. ..+ .++ ...+..|+..+.+++++-|...-..|..|....... .......+-..+.+.+.+.+...
T Consensus 77 ~~--~~~----~~~-~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~ 149 (1230)
T 1u6g_C 77 SK--VKE----YQV-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVS 149 (1230)
T ss_dssp TT--SCH----HHH-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHH
T ss_pred Hh--CCH----HHH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchH
Confidence 42 121 111 245667888888899888888777777765543322 11122333344444443223333
Q ss_pred ChHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhccCCCCcccchhhHHHHHHHHHhcCC-----CcHHHHHHHhhhh-C
Q 010682 265 GIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDP-----KLATNAIKGLLKY-W 338 (504)
Q Consensus 265 GIaELLeIlgSIIngfa~PLKeehk~Fl~~vLlPLhk~~~~~~y~~qL~~ci~qF~~KDp-----~La~~vi~~LLk~-W 338 (504)
-....+++++.+...+.-.+.+.. .-+...|+++...+.. .....-..|+..++..-+ .+...++.+|..- |
T Consensus 150 ~~~~al~~l~~~~~~~~~~l~~~~-~~ll~~l~~~L~~~~~-~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~ 227 (1230)
T 1u6g_C 150 VQLEALDIMADMLSRQGGLLVNFH-PSILTCLLPQLTSPRL-AVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDS 227 (1230)
T ss_dssp HHHHHHHHHHHHHHHTCSSCTTTH-HHHHHHHGGGGGCSSH-HHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHhHhHHHHHH-HHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCc
Confidence 456788899988864433333322 3345666777665432 234455667777765432 3456666666553 2
Q ss_pred CCCCChhHhHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhh
Q 010682 339 PVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLW 395 (504)
Q Consensus 339 P~tns~KEvlFL~eleeiLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w 395 (504)
+. .-.+ .+.-+..+.+.++. .|...+..++..+-.++..++-.|-+.|+..|
T Consensus 228 ~~-~r~~---a~~~l~~l~~~~~~-~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l 279 (1230)
T 1u6g_C 228 MS-TTRT---YIQCIAAISRQAGH-RIGEYLEKIIPLVVKFCNVDDDELREYCIQAF 279 (1230)
T ss_dssp SC-SCTT---HHHHHHHHHHHSSG-GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHH
T ss_pred hh-HHHH---HHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 11 1111 24444555554433 45555556666777777776665555555544
No 15
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=83.92 E-value=19 Score=40.33 Aligned_cols=203 Identities=11% Similarity=0.126 Sum_probs=98.5
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHH---hhhhhcchHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhccCCCchH
Q 010682 210 VRLLDLFDSEDPRERDCLKTVLHRI---YGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKE 286 (504)
Q Consensus 210 ~~Ll~lfdSeDprERd~LktiLhrI---Y~Kf~~~R~fIrk~i~nif~~fi~e~e~hnGIaELLeIlgSIIngfa~PLKe 286 (504)
.++++.+. .|+..++.+..+++++ ||.- ..+|+-..+..++-.| .. .+++.+|.+++.++..|... +
T Consensus 689 ~~~l~~~~-~~~~v~e~~~~~l~~~~~~~~~~--~~~~l~~~~~~l~~~~--~~---~~~~~~l~l~~~li~~f~~~--~ 758 (963)
T 2x19_B 689 QKVLSKWL-NDAQVVEAVCAIFEKSVKTLLDD--FAPMVPQLCEMLGRMY--ST---IPQASALDLTRQLVHIFAHE--P 758 (963)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHHHHHSSST--TGGGHHHHHHHHHHHH--HH---SCCHHHHHHHHHHHHHHTTC--T
T ss_pred HHHHHhcc-CchHHHHHHHHHHHHHHHhhccc--ccccHHHHHHHHHHHH--Hc---CCccHHHHHHHHHHHHhCCC--c
Confidence 34444433 5667777777777775 3321 1233333333222222 11 24678999999999865442 0
Q ss_pred HHHHHHHHHHhhccCCCCcccchhhHHHHHHHHHhcCCCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHhhCChHHH-
Q 010682 287 EHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEF- 365 (504)
Q Consensus 287 ehk~Fl~~vLlPLhk~~~~~~y~~qL~~ci~qF~~KDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeiLe~~~~~~f- 365 (504)
.... .+..+.+.+..|+...+.+|+.-... =..-|+..+..++..++..-+
T Consensus 759 ~~~~-------------~~~~~l~~~~~~~l~~~~~~~~~~pd---------------~~~~~f~ll~~~~~~~~~~~~~ 810 (963)
T 2x19_B 759 AHFP-------------PIEALFLLVTSVTLTLFQQGPRDHPD---------------IVDSFMQLLAQALKRKPDLFLC 810 (963)
T ss_dssp TTCH-------------HHHHHHHHHHHHHHHHHHHCTTTCHH---------------HHHHHHHHHHHHHHHCGGGGGC
T ss_pred chHH-------------HHHHHHHHHHHHHHHHHhhCcccCch---------------HHHHHHHHHHHHHHhCcHHHcC
Confidence 0000 11112334445555444443321111 112334444555544332211
Q ss_pred HHH-HHHHHHHHHHhhCCCcHHHHHHHHHhhcc--------hhHHHHhhhccccccccchHHHH-HhhhhcccHHHHHHH
Q 010682 366 QKI-MVPLFRRIGCCLNSSHYQVAERAHLLWNN--------EHILNLVTHNRQVIIPLVFPALE-RNTQNHWNQAVLNLT 435 (504)
Q Consensus 366 ~~i-~~~lF~~ia~cl~S~hfqVAErAL~~w~N--------~~i~~li~~n~~~I~Pii~paL~-~~s~~HWn~~Vr~la 435 (504)
... ...++..+..++..+|..|+..|+.+|.+ +.+..++..+-..++..++..+. ...+..|+ ..
T Consensus 811 ~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-----~~ 885 (963)
T 2x19_B 811 ERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQASRSLMD-----CF 885 (963)
T ss_dssp TTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTTSCGGGHH-----HH
T ss_pred CcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhcccCChhHHH-----HH
Confidence 122 45678888889999999999999988853 23333333333333333333332 12234453 23
Q ss_pred HHHHHHHHHhCHHHHHHHHH
Q 010682 436 QNVRKILCEMDEELVQACKR 455 (504)
Q Consensus 436 ~~vlk~l~e~D~~lf~~c~~ 455 (504)
..++..|...++..+.+.+.
T Consensus 886 ~~il~~l~~~~~~~~~~~l~ 905 (963)
T 2x19_B 886 ADILFALNKHCFSLLSMWIK 905 (963)
T ss_dssp HHHHHHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHHChHHHHHHHH
Confidence 33444455556665555443
No 16
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=83.66 E-value=2.2 Score=37.93 Aligned_cols=86 Identities=12% Similarity=0.142 Sum_probs=67.6
Q ss_pred HHHHHHHhcCCCcHHHHHHHhhhhCCCC--CChhHhHHHHHHHHHHhhCC-------hHHHHHHHHHHHHHHHHhhCCCc
Q 010682 314 YCVVQFIDKDPKLATNAIKGLLKYWPVT--NSQKELMFISELEEVLEMTS-------MAEFQKIMVPLFRRIGCCLNSSH 384 (504)
Q Consensus 314 ~ci~qF~~KDp~La~~vi~~LLk~WP~t--ns~KEvlFL~eleeiLe~~~-------~~~f~~i~~~lF~~ia~cl~S~h 384 (504)
.-..+++-.+.+-+..++..+.++-=.. ++.|.+-+|..+.+|+...- -..|.++++++|..+....++.+
T Consensus 23 q~~s~W~l~h~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk~k~~~~f~~~F~~~L~~~~~~~~~~~~~~~ 102 (142)
T 2km4_A 23 SSASKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAKGQKIIQFQDSFGKVAAEVLGRINQEFPRDL 102 (142)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHTHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 3445666667777777777777777665 66999999999999996432 24788899999999998888889
Q ss_pred HHHHHHHHHhhcchh
Q 010682 385 YQVAERAHLLWNNEH 399 (504)
Q Consensus 385 fqVAErAL~~w~N~~ 399 (504)
-+..+|-+.+|....
T Consensus 103 ~~kv~rvl~iWeer~ 117 (142)
T 2km4_A 103 KKKLSRVVNILKERN 117 (142)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhccC
Confidence 999999999997644
No 17
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=83.30 E-value=29 Score=35.76 Aligned_cols=235 Identities=13% Similarity=0.065 Sum_probs=117.0
Q ss_pred hHHhhhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhhhcchHHHHH-HHHHHHHHhhhcccCCcChHHHHHHHHH
Q 010682 197 VKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQ-AVCNIIYRFVFETERHNGIAELLEIFGS 275 (504)
Q Consensus 197 ~~~~k~~id~~Fi~~Ll~lfdSeDprERd~LktiLhrIY~Kf~~~R~fIrk-~i~nif~~fi~e~e~hnGIaELLeIlgS 275 (504)
+......++...|..|+.++.++|+.-|...-..|..|-+.-...|..+.. .+-..+.+.+.......-.......|+.
T Consensus 150 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~ 229 (528)
T 4b8j_A 150 SENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSN 229 (528)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 334444455567888999999999999999999998886554444555433 2234455555333333334555667777
Q ss_pred HHhccCCCchHHHHHHHHHHHhhccCCCCcccchhhHHHHHHHHHhcCC---------CcHHHHHHHhhhhCCCCCChhH
Q 010682 276 IISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDP---------KLATNAIKGLLKYWPVTNSQKE 346 (504)
Q Consensus 276 IIngfa~PLKeehk~Fl~~vLlPLhk~~~~~~y~~qL~~ci~qF~~KDp---------~La~~vi~~LLk~WP~tns~KE 346 (504)
+..+...+ ......-....|+.|.....-.. ...-..++......++ .....++..|- ..+..=.
T Consensus 230 L~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~v-~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~----~~~~~v~ 303 (528)
T 4b8j_A 230 FCRGKPQP-SFEQTRPALPALARLIHSNDEEV-LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL----HPSPSVL 303 (528)
T ss_dssp HHCSSSCC-CHHHHTTHHHHHHHHTTCCCHHH-HHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTT----CSCHHHH
T ss_pred HHcCCCCC-cHHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHc----CCChhHH
Confidence 77665222 22222234566666665543211 1122223332222222 23333333332 1222111
Q ss_pred hHHHHHHHHHHhhCChHHHHHHH-HHHHHHHHHhhCCC-cHHHHHHHHHhhcc-----hhHHHHhhhccccccccchHHH
Q 010682 347 LMFISELEEVLEMTSMAEFQKIM-VPLFRRIGCCLNSS-HYQVAERAHLLWNN-----EHILNLVTHNRQVIIPLVFPAL 419 (504)
Q Consensus 347 vlFL~eleeiLe~~~~~~f~~i~-~~lF~~ia~cl~S~-hfqVAErAL~~w~N-----~~i~~li~~n~~~I~Pii~paL 419 (504)
.--+.-|..+.. -.+...+.+. ..+...|..++.+. +..|.+.|+....| +.....+.+ ..++| .|
T Consensus 304 ~~a~~~L~nl~~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~--~~~i~----~L 376 (528)
T 4b8j_A 304 IPALRTVGNIVT-GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVIN--AGIIG----PL 376 (528)
T ss_dssp HHHHHHHHHHTT-SCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHH--TTCHH----HH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHH--CCCHH----HH
Confidence 122233333322 1233333222 23456667777787 88888888765543 111111111 12334 44
Q ss_pred HHhhhhcccHHHHHHHHHHHHHHHHh
Q 010682 420 ERNTQNHWNQAVLNLTQNVRKILCEM 445 (504)
Q Consensus 420 ~~~s~~HWn~~Vr~la~~vlk~l~e~ 445 (504)
.+..... +..++..|..++.-+..-
T Consensus 377 ~~lL~~~-~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 377 VNLLQTA-EFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHHHHS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CHHHHHHHHHHHHHHHcC
Confidence 4433322 667777777776666554
No 18
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=81.41 E-value=27 Score=36.10 Aligned_cols=230 Identities=10% Similarity=0.036 Sum_probs=117.8
Q ss_pred hhhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhhhcchHHHH-HHHHHHHHHhhhcccCCcChHHHHHHHHHHHh
Q 010682 200 AKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIR-QAVCNIIYRFVFETERHNGIAELLEIFGSIIS 278 (504)
Q Consensus 200 ~k~~id~~Fi~~Ll~lfdSeDprERd~LktiLhrIY~Kf~~~R~fIr-k~i~nif~~fi~e~e~hnGIaELLeIlgSIIn 278 (504)
.+..++...+..|+.++.++|+.-|...-..|..|-+.-...|..+. ..+-..+.+.+.. ....-....+..|+.+..
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-CCHHHHHHHHHHHHHHhC
Confidence 33344445677888889999999999999999888765444444432 2334455565543 121223445667777776
Q ss_pred ccCCCchHHHHHHHHHHHhhccCCCCcccchhhHHHHHHHHHhcCC---------CcHHHHHHHhhhhCCCCCChhHhHH
Q 010682 279 GFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDP---------KLATNAIKGLLKYWPVTNSQKELMF 349 (504)
Q Consensus 279 gfa~PLKeehk~Fl~~vLlPLhk~~~~~~y~~qL~~ci~qF~~KDp---------~La~~vi~~LLk~WP~tns~KEvlF 349 (504)
+-..........-....|+.|.....-. -......++......++ .+...++..| ++ .+..-...-
T Consensus 245 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~-v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL-~~---~~~~v~~~a 319 (530)
T 1wa5_B 245 GKKPQPDWSVVSQALPTLAKLIYSMDTE-TLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELL-SH---ESTLVQTPA 319 (530)
T ss_dssp CSSSCCCHHHHGGGHHHHHHHTTCCCHH-HHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGG-GC---SCHHHHHHH
T ss_pred CCCCCCcHHHHHhHHHHHHHHHcCCCHH-HHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHH-CC---CChhhHHHH
Confidence 5422222233333456677777654321 12223344444443333 3333333333 21 222111122
Q ss_pred HHHHHHHHhhCChHHHHHHH-HHHHHHHHHhhCCCcHHHHHHHHHhhcch------hHHHHhhhccccccccchHHHHHh
Q 010682 350 ISELEEVLEMTSMAEFQKIM-VPLFRRIGCCLNSSHYQVAERAHLLWNNE------HILNLVTHNRQVIIPLVFPALERN 422 (504)
Q Consensus 350 L~eleeiLe~~~~~~f~~i~-~~lF~~ia~cl~S~hfqVAErAL~~w~N~------~i~~li~~n~~~I~Pii~paL~~~ 422 (504)
+.-|..+... .+...+.+. ..+...|..++.+++..|-+.|+..+.|- .+..++ ...++|.++..|
T Consensus 320 ~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~---~~~~l~~L~~lL--- 392 (530)
T 1wa5_B 320 LRAVGNIVTG-NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVI---DANLIPPLVKLL--- 392 (530)
T ss_dssp HHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH---HTTCHHHHHHHH---
T ss_pred HHHHHHHHcC-CHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH---HCCCHHHHHHHH---
Confidence 3333333221 233323222 24667788889999999988888665441 111111 123445544444
Q ss_pred hhhcccHHHHHHHHHHHHHHHH
Q 010682 423 TQNHWNQAVLNLTQNVRKILCE 444 (504)
Q Consensus 423 s~~HWn~~Vr~la~~vlk~l~e 444 (504)
.+-+..|+..|..++.-+..
T Consensus 393 --~~~~~~v~~~a~~aL~~l~~ 412 (530)
T 1wa5_B 393 --EVAEYKTKKEACWAISNASS 412 (530)
T ss_dssp --HHSCHHHHHHHHHHHHHHHH
T ss_pred --hcCCHHHHHHHHHHHHHHHh
Confidence 22356777777666665543
No 19
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=80.08 E-value=27 Score=40.32 Aligned_cols=100 Identities=14% Similarity=0.168 Sum_probs=68.8
Q ss_pred hhHhHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcchhHHHHhhh-------ccccccccch
Q 010682 344 QKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTH-------NRQVIIPLVF 416 (504)
Q Consensus 344 ~KEvlFL~eleeiLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i~~li~~-------n~~~I~Pii~ 416 (504)
.-..--+..+..+++...++.|.....++...+..+++..+..|+..|+..+. .+.+.+.. .-...++.++
T Consensus 492 ~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~--~l~~~~~~~~~~~~~~~~~~~~~ll 569 (1230)
T 1u6g_C 492 NLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQ--QLVKVIRPLDQPSSFDATPYIKDLF 569 (1230)
T ss_dssp HHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHH--HHHHHHCCSSSCCCCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHH--HHHHHhcCcccccccchHHHHHHHH
Confidence 33445577788888888888888888888888889999999999888876663 33333322 1112234455
Q ss_pred HHHHHhhh-hcccHHHHHHHHHHHHHHHHh
Q 010682 417 PALERNTQ-NHWNQAVLNLTQNVRKILCEM 445 (504)
Q Consensus 417 paL~~~s~-~HWn~~Vr~la~~vlk~l~e~ 445 (504)
|.+..... ...+..+|..|..++..+.+.
T Consensus 570 ~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~ 599 (1230)
T 1u6g_C 570 TCTIKRLKAADIDQEVKERAISCMGQIICN 599 (1230)
T ss_dssp HHHHHHHSCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 55544432 467889999999888888754
No 20
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=79.08 E-value=52 Score=32.46 Aligned_cols=106 Identities=8% Similarity=0.099 Sum_probs=58.0
Q ss_pred HHHHHHHhcCC-CcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 010682 314 YCVVQFIDKDP-KLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAH 392 (504)
Q Consensus 314 ~ci~qF~~KDp-~La~~vi~~LLk~WP~tns~KEvlFL~eleeiLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL 392 (504)
.|+..++..-+ .....++..+...---.+......-+.-+..+.+.+.++.+...+..++..+..+++++|..|-.+|+
T Consensus 350 ~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~ 429 (462)
T 1ibr_B 350 VCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAA 429 (462)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 34444433333 23334444443332223333333445566666666655545555567888899999999999988887
Q ss_pred HhhcchhHHHHhhhcc--ccccccchHHHHH
Q 010682 393 LLWNNEHILNLVTHNR--QVIIPLVFPALER 421 (504)
Q Consensus 393 ~~w~N~~i~~li~~n~--~~I~Pii~paL~~ 421 (504)
.... .+...+.... ...++.++|.|.+
T Consensus 430 ~~l~--~~~~~~~~~~~~~~~l~~ll~~Ll~ 458 (462)
T 1ibr_B 430 WTVG--RICELLPEAAINDVYLAPLLQCLIE 458 (462)
T ss_dssp HHHH--HHHHHGGGGCCSTTTHHHHHHHHHC
T ss_pred HHHH--HHHHhcccccccHHHHHHHHHHHHH
Confidence 7664 3444443321 2344555666543
No 21
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=78.88 E-value=19 Score=35.40 Aligned_cols=104 Identities=11% Similarity=0.094 Sum_probs=68.2
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcchhHHHHhhhcc-ccc---cccchHHHHHhhhh
Q 010682 350 ISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTHNR-QVI---IPLVFPALERNTQN 425 (504)
Q Consensus 350 L~eleeiLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i~~li~~n~-~~I---~Pii~paL~~~s~~ 425 (504)
++.|.+.++. .+++......-+|+-++--+.+.|++|+.++|.+.. .++..+.+.. +.. ...++|.|..-. +
T Consensus 67 le~L~~~l~~-~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~--~l~~~l~~~~y~~~~~ea~~~lP~LveKl-G 142 (266)
T 2of3_A 67 LDSLVRLADT-SPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCK--VIVELIRDTETPMSQEEVSAFVPYLLLKT-G 142 (266)
T ss_dssp HHHHHHHHHH-CHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHH--HHHHHHHHTTCCCCHHHHHHHHHHHHHGG-G
T ss_pred HHHHHHHhhh-ChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHHh-C
Confidence 3344444443 345555566667887776666889999999999884 4444443321 111 245667766544 6
Q ss_pred cccHHHHHHHHHHHHHHHHhC-HH-HHHHHHHHH
Q 010682 426 HWNQAVLNLTQNVRKILCEMD-EE-LVQACKRKL 457 (504)
Q Consensus 426 HWn~~Vr~la~~vlk~l~e~D-~~-lf~~c~~~~ 457 (504)
|=++.||+.+..+++.+.++- |. +|+.+.+.+
T Consensus 143 d~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ 176 (266)
T 2of3_A 143 EAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDAL 176 (266)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGG
T ss_pred CChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 778999999999999999853 44 677766544
No 22
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=77.42 E-value=3.4 Score=35.86 Aligned_cols=87 Identities=16% Similarity=0.245 Sum_probs=70.3
Q ss_pred hHHHHHHHHHhcCCCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHhhCC------hHHHHHHHHHHHHHHHHhhCCCc
Q 010682 311 QLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTS------MAEFQKIMVPLFRRIGCCLNSSH 384 (504)
Q Consensus 311 qL~~ci~qF~~KDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeiLe~~~------~~~f~~i~~~lF~~ia~cl~S~h 384 (504)
+-..-+++++-.+.+-+..++..+.++--.+.+.+.+-+|..+.+|+.... -..|.+.+..+|..+.......+
T Consensus 21 ~sI~~~s~w~l~~~~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~~~~~y~~~f~~~l~~~~~~~~~~~~~~~ 100 (135)
T 4fu3_A 21 QSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGC 100 (135)
T ss_dssp THHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTTTCSHHHHHHHTTHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 444555677777778888888888888888888899999999999996441 24577788999999988888888
Q ss_pred HHHHHHHHHhhcc
Q 010682 385 YQVAERAHLLWNN 397 (504)
Q Consensus 385 fqVAErAL~~w~N 397 (504)
-+-..+-+.+|..
T Consensus 101 k~kl~kll~iW~~ 113 (135)
T 4fu3_A 101 KKPLERLLNIWQE 113 (135)
T ss_dssp SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC
Confidence 8889999999975
No 23
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=76.87 E-value=26 Score=37.34 Aligned_cols=175 Identities=10% Similarity=0.149 Sum_probs=106.7
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhccCCCchH
Q 010682 207 LFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKE 286 (504)
Q Consensus 207 ~Fi~~Ll~lfdSeDprERd~LktiLhrIY~Kf~~~R~fIrk~i~nif~~fi~e~e~hnGIaELLeIlgSIIngfa~PLKe 286 (504)
..+..|.+.+.+.|..-|..+-.-++++-.+|...- ..+-+.+.+++... .-.-..|.+..++.|+.++.- +++
T Consensus 353 ~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~----~~~v~~Ll~ll~~~-~~~v~~e~i~~l~~ii~~~p~-~~~ 426 (591)
T 2vgl_B 353 QVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSA----ERCVSTLLDLIQTK-VNYVVQEAIVVIRDIFRKYPN-KYE 426 (591)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHH----HHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHSCS-SCC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHH----HHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHCcc-hHH
Confidence 356678888888899888888888887777764322 22335555655332 222356677788888877632 222
Q ss_pred HHHHHHHHHHhhccCCCCcccchhhHHHHHHHHHhcCCCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHhhCChHHHH
Q 010682 287 EHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQ 366 (504)
Q Consensus 287 ehk~Fl~~vLlPLhk~~~~~~y~~qL~~ci~qF~~KDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeiLe~~~~~~f~ 366 (504)
.-...+... ...-....-.....+++.+|...-+. ...+++.+++.+...++.=+...|.-+..+....+.. .+
T Consensus 427 ~~v~~L~~~----l~~~~~~~~~~~~~wilGey~~~~~~-~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~-~~ 500 (591)
T 2vgl_B 427 SIIATLCEN----LDSLDEPDARAAMIWIVGEYAERIDN-ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSE-TQ 500 (591)
T ss_dssp TTHHHHHHT----TTTCCSHHHHHHHHHHHHTTCTTCTT-HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCST-TH
T ss_pred HHHHHHHHH----HHhccCHHHHHHHHHHHHcccccccC-HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchH-HH
Confidence 222222222 22111112244566777777554443 6799999999888777666667778888777655432 22
Q ss_pred HHHHHHHHHHHHhh-CCCcHHHHHHHHHhhc
Q 010682 367 KIMVPLFRRIGCCL-NSSHYQVAERAHLLWN 396 (504)
Q Consensus 367 ~i~~~lF~~ia~cl-~S~hfqVAErAL~~w~ 396 (504)
..+..+ +..|. +|.+..|=+||..+|.
T Consensus 501 ~~i~~l---l~~~~~d~~d~evrdRA~~y~~ 528 (591)
T 2vgl_B 501 ELVQQV---LSLATQDSDNPDLRDRGYIYWR 528 (591)
T ss_dssp HHHHHH---HHHHHTTCCCHHHHHHHHHHHT
T ss_pred HHHHHH---HHHhhhcCCChHHHHHHHHHHH
Confidence 333333 34443 5799999999998774
No 24
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=74.47 E-value=25 Score=31.08 Aligned_cols=181 Identities=13% Similarity=0.070 Sum_probs=86.4
Q ss_pred CCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhhhcch-HHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhccCC
Q 010682 204 VDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHR-QFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFAL 282 (504)
Q Consensus 204 id~~Fi~~Ll~lfdSeDprERd~LktiLhrIY~Kf~~~R-~fIrk~i~nif~~fi~e~e~hnGIaELLeIlgSIIngfa~ 282 (504)
....+...|+.++.|+|+.-|...-..|..+-..-...+ .++....-..+.+++... ...-....+..|+.+..+.
T Consensus 9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~-- 85 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGG-- 85 (210)
T ss_dssp ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSC--
T ss_pred cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCC--
Confidence 344456678888899999999888888877753333333 333333345555655432 1112334455666665332
Q ss_pred CchHHHHHH-----HHHHHhhccCCCCcccchhhHHHHHHHHHhcCCC---------cHHHHHHHhhhhCCCCCChhHhH
Q 010682 283 PLKEEHKIF-----LCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPK---------LATNAIKGLLKYWPVTNSQKELM 348 (504)
Q Consensus 283 PLKeehk~F-----l~~vLlPLhk~~~~~~y~~qL~~ci~qF~~KDp~---------La~~vi~~LLk~WP~tns~KEvl 348 (504)
++.+.. ....|+.+.+...... ...-..++......++. ....+++.+- ..+..=+..
T Consensus 86 ---~~~~~~i~~~g~i~~L~~lL~~~~~~v-~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~----~~~~~v~~~ 157 (210)
T 4db6_A 86 ---NEQIQAVIDAGALPALVQLLSSPNEQI-LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS----SPNEQILQE 157 (210)
T ss_dssp ---HHHHHHHHHTTCHHHHHHHTTCSCHHH-HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT----CSCHHHHHH
T ss_pred ---cHHHHHHHHCCCHHHHHHHHcCCcHHH-HHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHc----CCCHHHHHH
Confidence 222222 1356666666553211 12223333333333322 2233333322 122211111
Q ss_pred HHHHHHHHHhhCChHHHHHHH-HHHHHHHHHhhCCCcHHHHHHHHHhhc
Q 010682 349 FISELEEVLEMTSMAEFQKIM-VPLFRRIGCCLNSSHYQVAERAHLLWN 396 (504)
Q Consensus 349 FL~eleeiLe~~~~~~f~~i~-~~lF~~ia~cl~S~hfqVAErAL~~w~ 396 (504)
-+.-|..+... .++.-..+. ......|...+.+.+..|.+.|+..+.
T Consensus 158 a~~aL~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~ 205 (210)
T 4db6_A 158 ALWALSNIASG-GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALE 205 (210)
T ss_dssp HHHHHHHHHTS-CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 12223333321 122222221 245677788888888888888887654
No 25
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=74.17 E-value=46 Score=29.80 Aligned_cols=193 Identities=15% Similarity=0.114 Sum_probs=96.7
Q ss_pred hHHhhhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhhhcchHHH-HHHHHHHHHHhhhcccCCcChHHHHHHHHH
Q 010682 197 VKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFI-RQAVCNIIYRFVFETERHNGIAELLEIFGS 275 (504)
Q Consensus 197 ~~~~k~~id~~Fi~~Ll~lfdSeDprERd~LktiLhrIY~Kf~~~R~fI-rk~i~nif~~fi~e~e~hnGIaELLeIlgS 275 (504)
+...+..++...+..|+.++.++|+.-|...-..|..+-......|..+ ....-..+.+++... ...-....+..|+.
T Consensus 34 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~ 112 (252)
T 4hxt_A 34 ASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALAN 112 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-SHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 3445555666789999999999999999999999988865534444443 333445566666432 22223334555555
Q ss_pred HHhccCCCchHHHHHH-----HHHHHhhccCCCCcccchhhHHHHHHHHHhcCCCcHHH-----HHHHhhhhCCCCCChh
Q 010682 276 IISGFALPLKEEHKIF-----LCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATN-----AIKGLLKYWPVTNSQK 345 (504)
Q Consensus 276 IIngfa~PLKeehk~F-----l~~vLlPLhk~~~~~~y~~qL~~ci~qF~~KDp~La~~-----vi~~LLk~WP~tns~K 345 (504)
+..+. ++.+.. ....|+.+.+...-. ....-..++......++..... ++..|+..=-..+..-
T Consensus 113 l~~~~-----~~~~~~~~~~~~i~~L~~~l~~~~~~-~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v 186 (252)
T 4hxt_A 113 IASGP-----DEAIKAIVDAGGVEVLVKLLTSTDSE-VQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEV 186 (252)
T ss_dssp HTTSC-----HHHHHHHHHTTHHHHHHHHTTCSCHH-HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHH
T ss_pred HHcCC-----HHHHHHHHHCCCHHHHHHHHcCCCHH-HHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHH
Confidence 55322 222222 245566666654421 2333444444444333332111 1122222211222211
Q ss_pred HhHHHHHHHHHHhhCChHHHHHHH-HHHHHHHHHhhCCCcHHHHHHHHHhhcc
Q 010682 346 ELMFISELEEVLEMTSMAEFQKIM-VPLFRRIGCCLNSSHYQVAERAHLLWNN 397 (504)
Q Consensus 346 EvlFL~eleeiLe~~~~~~f~~i~-~~lF~~ia~cl~S~hfqVAErAL~~w~N 397 (504)
...-+.-|..+.. -+++.-+.+. ..+...+...+.+.+..|.+.|+....|
T Consensus 187 ~~~a~~~L~~l~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 187 QKEAARALANIAS-GPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALEN 238 (252)
T ss_dssp HHHHHHHHHHHTT-SBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 1111222332222 1222222221 2356677777888888888888866644
No 26
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=69.56 E-value=66 Score=33.19 Aligned_cols=224 Identities=11% Similarity=0.022 Sum_probs=101.8
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhhhh--hcchHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhccCCCchH
Q 010682 209 IVRLLDLFDSEDPRERDCLKTVLHRIYGKF--MAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKE 286 (504)
Q Consensus 209 i~~Ll~lfdSeDprERd~LktiLhrIY~Kf--~~~R~fIrk~i~nif~~fi~e~e~hnGIaELLeIlgSIIngfa~PLKe 286 (504)
+..|+..+.|+|+..|...-..|.++..+. ...+..+...+-..+.+++.......-..+.+..|+.|..|. .
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-----~ 163 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-----S 163 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-----H
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-----H
Confidence 556777777788777777777776664432 122333443444555555533211222334555666665442 1
Q ss_pred HHHHHH-----HHHHhhccCCCCcccchhhHHHHHHHHHhcCC---------CcHHHHHHHhhhhCCCCCChhHhHHHHH
Q 010682 287 EHKIFL-----CRALIPLHKPKSVGIYHQQLTYCVVQFIDKDP---------KLATNAIKGLLKYWPVTNSQKELMFISE 352 (504)
Q Consensus 287 ehk~Fl-----~~vLlPLhk~~~~~~y~~qL~~ci~qF~~KDp---------~La~~vi~~LLk~WP~tns~KEvlFL~e 352 (504)
++...+ ...|+.|.+.... ....+-..++..+...++ .....+++.+-. .+..=...-+.-
T Consensus 164 ~~~~~~~~~g~i~~Lv~lL~~~~~-~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~----~~~~v~~~a~~~ 238 (530)
T 1wa5_B 164 AQTKVVVDADAVPLFIQLLYTGSV-EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS----NKPSLIRTATWT 238 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHCCH-HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS----CCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCH-HHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc----CCHHHHHHHHHH
Confidence 222221 2333333332211 112223333333333222 333333333322 221111112233
Q ss_pred HHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcc-----hhHHHHhhhccccccccchHHHHHhhhhcc
Q 010682 353 LEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNN-----EHILNLVTHNRQVIIPLVFPALERNTQNHW 427 (504)
Q Consensus 353 leeiLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N-----~~i~~li~~n~~~I~Pii~paL~~~s~~HW 427 (504)
|..+...-.+..-..+...+...|...+.+.+..|...|+..+.| +.....+.+ ..++|. |.... .|=
T Consensus 239 L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~--~~~v~~----Lv~lL-~~~ 311 (530)
T 1wa5_B 239 LSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVID--VRIPKR----LVELL-SHE 311 (530)
T ss_dssp HHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHH--TTCHHH----HHHGG-GCS
T ss_pred HHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHh--cCcHHH----HHHHH-CCC
Confidence 333332211110011234556666777788888887777755432 111111111 123344 44433 244
Q ss_pred cHHHHHHHHHHHHHHHHhCHHH
Q 010682 428 NQAVLNLTQNVRKILCEMDEEL 449 (504)
Q Consensus 428 n~~Vr~la~~vlk~l~e~D~~l 449 (504)
+..|+..|..++.-+..-++..
T Consensus 312 ~~~v~~~a~~~L~~l~~~~~~~ 333 (530)
T 1wa5_B 312 STLVQTPALRAVGNIVTGNDLQ 333 (530)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHH
T ss_pred ChhhHHHHHHHHHHHHcCCHHH
Confidence 6788888888888887655543
No 27
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=66.56 E-value=98 Score=31.69 Aligned_cols=226 Identities=15% Similarity=0.056 Sum_probs=113.5
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhhhh--hcchHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhccCCCchH
Q 010682 209 IVRLLDLFDSEDPRERDCLKTVLHRIYGKF--MAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKE 286 (504)
Q Consensus 209 i~~Ll~lfdSeDprERd~LktiLhrIY~Kf--~~~R~fIrk~i~nif~~fi~e~e~hnGIaELLeIlgSIIngfa~PLKe 286 (504)
+..|+..+.|+|+..|..--..|.++-... ...+.++...+-..+.+++.......--.+.+..|+.|..|- +
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-----~ 150 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-----S 150 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-----H
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-----H
Confidence 556777788888888888777777774432 233444555555666666643321222345566777776543 2
Q ss_pred HHHHH-----HHHHHhhccCCCCcccchhhHHHHHHHHHhcCCCcHHHH-----HHHhhhhC-CCCCChhHhHHHHHHHH
Q 010682 287 EHKIF-----LCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNA-----IKGLLKYW-PVTNSQKELMFISELEE 355 (504)
Q Consensus 287 ehk~F-----l~~vLlPLhk~~~~~~y~~qL~~ci~qF~~KDp~La~~v-----i~~LLk~W-P~tns~KEvlFL~elee 355 (504)
+++.. ....|+.|.+.... ....+-..++......++.....+ +..|++.- ...+..=...-+.-|..
T Consensus 151 ~~~~~~~~~g~i~~L~~lL~~~~~-~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~ 229 (528)
T 4b8j_A 151 ENTKVVIDHGAVPIFVKLLGSSSD-DVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSN 229 (528)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCH-HHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHhcCCCH-HHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 33332 24556666666432 223334445555444434322211 22333222 11121111122233333
Q ss_pred HHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcch-----hHHHHhhhccccccccchHHHHHhhhhcccHH
Q 010682 356 VLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNE-----HILNLVTHNRQVIIPLVFPALERNTQNHWNQA 430 (504)
Q Consensus 356 iLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N~-----~i~~li~~n~~~I~Pii~paL~~~s~~HWn~~ 430 (504)
+...-+...+ .....+...|...+.+.+..|.+.|+..+.|- .....+. -.-++|.|.+.. .|=+..
T Consensus 230 L~~~~~~~~~-~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~------~~g~v~~Lv~lL-~~~~~~ 301 (528)
T 4b8j_A 230 FCRGKPQPSF-EQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVI------EAGVCPRLVELL-LHPSPS 301 (528)
T ss_dssp HHCSSSCCCH-HHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHH------HTTCHHHHHHHT-TCSCHH
T ss_pred HHcCCCCCcH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH------HcCHHHHHHHHH-cCCChh
Confidence 3332211111 23456777778888999989988887655331 1111111 112344444433 233678
Q ss_pred HHHHHHHHHHHHHHhCHH
Q 010682 431 VLNLTQNVRKILCEMDEE 448 (504)
Q Consensus 431 Vr~la~~vlk~l~e~D~~ 448 (504)
|+..|..++.-+..-++.
T Consensus 302 v~~~a~~~L~nl~~~~~~ 319 (528)
T 4b8j_A 302 VLIPALRTVGNIVTGDDA 319 (528)
T ss_dssp HHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHHcCCHH
Confidence 888888888777664443
No 28
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=62.37 E-value=14 Score=32.86 Aligned_cols=90 Identities=10% Similarity=0.160 Sum_probs=73.0
Q ss_pred hhhHHHHHHHHHhcCCCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHhhCCh---HHHHHHHHHHHHHHHHhhCCCcH
Q 010682 309 HQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSM---AEFQKIMVPLFRRIGCCLNSSHY 385 (504)
Q Consensus 309 ~~qL~~ci~qF~~KDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeiLe~~~~---~~f~~i~~~lF~~ia~cl~S~hf 385 (504)
.++...-++.++..+...+..++..+.+|--++.+.+.+.+|.-+..|+..+.. ..|.+.+.++|...-.+++...-
T Consensus 23 Sk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r 102 (144)
T 1sz9_A 23 SRPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTR 102 (144)
T ss_dssp CHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 455666678888888888999998888888889999999999999999987653 45777788899888887766666
Q ss_pred HHHHHHHHhhcch
Q 010682 386 QVAERAHLLWNNE 398 (504)
Q Consensus 386 qVAErAL~~w~N~ 398 (504)
+-..|-+.+|...
T Consensus 103 ~k~~rL~~~W~~~ 115 (144)
T 1sz9_A 103 TKLINMFKLWLNP 115 (144)
T ss_dssp HHHHHHHHHHTSG
T ss_pred HHHHHHHHHHhCc
Confidence 6677788999754
No 29
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=62.30 E-value=1.1e+02 Score=32.88 Aligned_cols=25 Identities=12% Similarity=0.025 Sum_probs=19.4
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHhhc
Q 010682 372 LFRRIGCCLNSSHYQVAERAHLLWN 396 (504)
Q Consensus 372 lF~~ia~cl~S~hfqVAErAL~~w~ 396 (504)
+-..+..|..|.+..|=+||..+|.
T Consensus 549 l~~~L~~~~~~~d~evrdRA~~y~~ 573 (618)
T 1w63_A 549 IKKVVSIYGSSIDVELQQRAVEYNA 573 (618)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4445677788888899999988875
No 30
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=61.94 E-value=37 Score=32.14 Aligned_cols=87 Identities=13% Similarity=0.084 Sum_probs=56.3
Q ss_pred HHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcchhHHHHhhhccc------ccc-ccchHHHHHhhh
Q 010682 352 ELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTHNRQ------VII-PLVFPALERNTQ 424 (504)
Q Consensus 352 eleeiLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i~~li~~n~~------~I~-Pii~paL~~~s~ 424 (504)
-+..+++.++|.........+...|..++++.+.+|=+.|+.+... ++..... ..+ |.++|.|.+..
T Consensus 127 al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~-----~~~~~~~~~~~l~~~l~~~iip~l~~~l- 200 (249)
T 2qk1_A 127 ALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNA-----SMKEEKDGYSTLQRYLKDEVVPIVIQIV- 200 (249)
T ss_dssp HHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHH-----HHHHCCSCSHHHHHHHTTTHHHHHHHHH-
T ss_pred HHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHH-----HHHHcCCcchhHHHHHHHHHHHHHHHHh-
Confidence 3555566665422111134566777788999999999999987643 2322221 135 67777776655
Q ss_pred hcccHHHHHHHHHHHHHHHH
Q 010682 425 NHWNQAVLNLTQNVRKILCE 444 (504)
Q Consensus 425 ~HWn~~Vr~la~~vlk~l~e 444 (504)
++=+..||..|..++-.++.
T Consensus 201 ~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 201 NDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHH
Confidence 44488899999999988763
No 31
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=58.84 E-value=99 Score=27.51 Aligned_cols=224 Identities=13% Similarity=0.075 Sum_probs=111.6
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhhhhhcchHH-HHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhccCCCchHH
Q 010682 209 IVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQF-IRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEE 287 (504)
Q Consensus 209 i~~Ll~lfdSeDprERd~LktiLhrIY~Kf~~~R~f-Irk~i~nif~~fi~e~e~hnGIaELLeIlgSIIngfa~PLKee 287 (504)
|..|+.++.++|+..|...-..|..+-......|.. +...+-..+.+++.... ..-....+..|+.+..+- ++
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~-----~~ 77 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGP-----DE 77 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSC-----HH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCC-----hH
Confidence 567899999999988988888888876554433333 33344556666664322 111233455555554321 22
Q ss_pred HHHH-----HHHHHhhccCCCCcccchhhHHHHHHHHHhcCCCcHHH-----HHHHhhhhCCCCCChhHhHHHHHHHHHH
Q 010682 288 HKIF-----LCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATN-----AIKGLLKYWPVTNSQKELMFISELEEVL 357 (504)
Q Consensus 288 hk~F-----l~~vLlPLhk~~~~~~y~~qL~~ci~qF~~KDp~La~~-----vi~~LLk~WP~tns~KEvlFL~eleeiL 357 (504)
.+.. ....|+.+.+...- .....-..++......++..... ++..|++.=-..+..=...-+.-|..+.
T Consensus 78 ~~~~~~~~~~i~~l~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~ 156 (252)
T 4hxt_A 78 AIKAIVDAGGVEVLVKLLTSTDS-EVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA 156 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSSH-HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHcCCCH-HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 2222 24566666665432 11223333444444333332211 1122222211222111111122222222
Q ss_pred hhCChHHHHHH-HHHHHHHHHHhhCCCcHHHHHHHHHhhcc-----hhHHHHhhhccccccccchHHHHHhhhhcccHHH
Q 010682 358 EMTSMAEFQKI-MVPLFRRIGCCLNSSHYQVAERAHLLWNN-----EHILNLVTHNRQVIIPLVFPALERNTQNHWNQAV 431 (504)
Q Consensus 358 e~~~~~~f~~i-~~~lF~~ia~cl~S~hfqVAErAL~~w~N-----~~i~~li~~n~~~I~Pii~paL~~~s~~HWn~~V 431 (504)
.. .++..+.+ .......|..++.+++..|.+.|+....| +.....+.+ .-+++.|.+.. .+=+..+
T Consensus 157 ~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~------~~~i~~L~~ll-~~~~~~v 228 (252)
T 4hxt_A 157 SG-PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVD------AGGVEVLQKLL-TSTDSEV 228 (252)
T ss_dssp TS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHH------TTHHHHHHHGG-GCSCHHH
T ss_pred cC-CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH------CCCHHHHHHHH-CCCcHHH
Confidence 11 22221221 13467778888889999998888865543 222222211 12344554444 3447789
Q ss_pred HHHHHHHHHHHHHhCH
Q 010682 432 LNLTQNVRKILCEMDE 447 (504)
Q Consensus 432 r~la~~vlk~l~e~D~ 447 (504)
+..|..++.-|...++
T Consensus 229 ~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 229 QKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHHHHHHHHHHHTCB
T ss_pred HHHHHHHHHHHHcCCC
Confidence 9999998888876543
No 32
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=58.11 E-value=2e+02 Score=30.74 Aligned_cols=139 Identities=10% Similarity=0.080 Sum_probs=74.7
Q ss_pred HHHhhccCCCCcccchhhHHHHHHHHHhcCCCcHHHHHHHhhhhCCCC---CC--hhHhHHHHHHHHHHhh---------
Q 010682 294 RALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVT---NS--QKELMFISELEEVLEM--------- 359 (504)
Q Consensus 294 ~vLlPLhk~~~~~~y~~qL~~ci~qF~~KDp~La~~vi~~LLk~WP~t---ns--~KEvlFL~eleeiLe~--------- 359 (504)
.+|+-+.+... ....++...++.+.+.++|.+-..++..|..+.... .+ ..-+-.|+|..+.+..
T Consensus 425 ~~ll~lL~~~~-~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~ 503 (618)
T 1w63_A 425 DTIMRVLTTAG-SYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPI 503 (618)
T ss_dssp HHHHHHHHHTG-GGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCC
T ss_pred HHHHHHHHhcc-chhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhccccccccccc
Confidence 34444444433 234456778889999999999888888887776532 11 1234466777666542
Q ss_pred -CChHHHHHHHHHHHHHHHHh-hCCCcHH-HHHHHH-HhhcchhHHHHhhhccccccccchHHHHHhhhhcccHHHHHHH
Q 010682 360 -TSMAEFQKIMVPLFRRIGCC-LNSSHYQ-VAERAH-LLWNNEHILNLVTHNRQVIIPLVFPALERNTQNHWNQAVLNLT 435 (504)
Q Consensus 360 -~~~~~f~~i~~~lF~~ia~c-l~S~hfq-VAErAL-~~w~N~~i~~li~~n~~~I~Pii~paL~~~s~~HWn~~Vr~la 435 (504)
+.|.....+ +..+.+. ..+++.| .+..|+ .++.. .. ..-+.+..-|.+ ...+-|..||+.|
T Consensus 504 ~~~~~~~~~~----l~~~l~~~~~~~~vr~~~lta~~Kl~~~---------~~-~~~~~l~~~L~~-~~~~~d~evrdRA 568 (618)
T 1w63_A 504 QVTEDEVLDI----LESVLISNMSTSVTRGYALTAIMKLSTR---------FT-CTVNRIKKVVSI-YGSSIDVELQQRA 568 (618)
T ss_dssp CCCHHHHHHH----HHHHHHSTTCCHHHHHHHHHHHHHHHTT---------CS-SCHHHHHHHHHH-HTTCSCHHHHHHH
T ss_pred CCCHHHHHHH----HHHHHhccCCCHHHHHHHHHHHHHHHHh---------Cc-chHHHHHHHHHH-hcCCCCHHHHHHH
Confidence 233333222 2222221 1222222 111122 33332 21 123333333333 4578899999999
Q ss_pred HHHHHHHHHhCHHH
Q 010682 436 QNVRKILCEMDEEL 449 (504)
Q Consensus 436 ~~vlk~l~e~D~~l 449 (504)
...+++|.. ++.+
T Consensus 569 ~~y~~ll~~-~~~~ 581 (618)
T 1w63_A 569 VEYNALFKK-YDHM 581 (618)
T ss_dssp HHHHHHHHT-TTTH
T ss_pred HHHHHHHcC-cHHH
Confidence 999999875 5544
No 33
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=53.60 E-value=1.3e+02 Score=27.13 Aligned_cols=36 Identities=17% Similarity=0.108 Sum_probs=27.6
Q ss_pred hhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhh
Q 010682 201 KKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYG 236 (504)
Q Consensus 201 k~~id~~Fi~~Ll~lfdSeDprERd~LktiLhrIY~ 236 (504)
+..++...|..|+.++.++|+.-|...-.+|..+-.
T Consensus 48 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 83 (252)
T 4db8_A 48 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 83 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 344555677889999999998888888888876654
No 34
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=52.83 E-value=29 Score=29.75 Aligned_cols=87 Identities=10% Similarity=0.190 Sum_probs=61.7
Q ss_pred hHHHHHHHHHhcCCCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHhhC---ChHHHHHHHHHHHHHHHHhh-CCCcHH
Q 010682 311 QLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMT---SMAEFQKIMVPLFRRIGCCL-NSSHYQ 386 (504)
Q Consensus 311 qL~~ci~qF~~KDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeiLe~~---~~~~f~~i~~~lF~~ia~cl-~S~hfq 386 (504)
+=..-+++++-.+.+-+..++..+.++--.+.+.+.+-+|..+.+|+... ....|.+...+.+..+-..+ ...+-+
T Consensus 22 ~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~~~f~~~l~~~~~~~~~~~~~~ 101 (132)
T 4flb_A 22 ESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPEAAALVKDPSVSK 101 (132)
T ss_dssp HHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHHHHHHTTHHHHHHTTCSTTTHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 33444567777777888888888888888888999999999999999765 23445544444443333333 456677
Q ss_pred HHHHHHHhhcc
Q 010682 387 VAERAHLLWNN 397 (504)
Q Consensus 387 VAErAL~~w~N 397 (504)
-..+-+.+|..
T Consensus 102 kl~~ll~iW~~ 112 (132)
T 4flb_A 102 SVERIFKIWED 112 (132)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 78889999975
No 35
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=51.29 E-value=2.1e+02 Score=30.24 Aligned_cols=30 Identities=10% Similarity=0.018 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHhhhhCCCC
Q 010682 312 LTYCVVQFIDKDPKLATNAIKGLLKYWPVT 341 (504)
Q Consensus 312 L~~ci~qF~~KDp~La~~vi~~LLk~WP~t 341 (504)
+.+.+...-+.||..-..+++.+-+|.|..
T Consensus 204 ~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~ 233 (591)
T 2vgl_B 204 INKLLTALNECTEWGQIFILDCLSNYNPKD 233 (591)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHTSCCCS
T ss_pred HHHHHHcCCCCCchHHHHHHHHHHHhCCCC
Confidence 334444444556666667777777777653
No 36
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=51.26 E-value=2.1e+02 Score=29.02 Aligned_cols=27 Identities=30% Similarity=0.213 Sum_probs=20.8
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHh
Q 010682 209 IVRLLDLFDSEDPRERDCLKTVLHRIY 235 (504)
Q Consensus 209 i~~Ll~lfdSeDprERd~LktiLhrIY 235 (504)
|..|+..+.|+|+..|...-..|..+.
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~ 38 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIA 38 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHH
T ss_pred HHHHHHHhhcccHHHHHHHHHhHHHHH
Confidence 667888888999999887766665554
No 37
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=49.48 E-value=2e+02 Score=28.16 Aligned_cols=224 Identities=11% Similarity=0.085 Sum_probs=112.0
Q ss_pred HHHHHHHhhcCCC-ChHHHHHHHHHHHHHhhhhhc-chHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhccCCCc
Q 010682 207 LFIVRLLDLFDSE-DPRERDCLKTVLHRIYGKFMA-HRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPL 284 (504)
Q Consensus 207 ~Fi~~Ll~lfdSe-DprERd~LktiLhrIY~Kf~~-~R~fIrk~i~nif~~fi~e~e~hnGIaELLeIlgSIIngfa~PL 284 (504)
..+..|+.++.++ |+.-|...-.+|..+...-.. .+.++...+-..+.+.+... ...--...+..|+.+..+.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~vr~~a~~~L~~l~~~~---- 138 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSE-FEDVQEQAVWALGNIAGDS---- 138 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTC----
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHccCC----
Confidence 5778888888888 888888888888888653222 22333334445555655431 1111234466777666432
Q ss_pred hHHHHHH-----HHHHHhhccCCCCcccchhhHHHHHHHHHhcC-CCc----HHHHHHHhhhhCCCCCChhHhHHHHHHH
Q 010682 285 KEEHKIF-----LCRALIPLHKPKSVGIYHQQLTYCVVQFIDKD-PKL----ATNAIKGLLKYWPVTNSQKELMFISELE 354 (504)
Q Consensus 285 Keehk~F-----l~~vLlPLhk~~~~~~y~~qL~~ci~qF~~KD-p~L----a~~vi~~LLk~WP~tns~KEvlFL~ele 354 (504)
++.+.. ....|+.+.+...-......-..++..++..+ |.. ...++..|++.--..+ .++ .....
T Consensus 139 -~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~--~~v--~~~a~ 213 (450)
T 2jdq_A 139 -TMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSD--TDV--LADAC 213 (450)
T ss_dssp -HHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCC--HHH--HHHHH
T ss_pred -HHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCC--HHH--HHHHH
Confidence 122221 13455666654222233445556666666443 321 1122222222211122 121 12222
Q ss_pred HHHhhC---ChHHHHHHH-HHHHHHHHHhhCCCcHHHHHHHHHhhcc-----hhHHHHhhhccccccccchHHHHHhhhh
Q 010682 355 EVLEMT---SMAEFQKIM-VPLFRRIGCCLNSSHYQVAERAHLLWNN-----EHILNLVTHNRQVIIPLVFPALERNTQN 425 (504)
Q Consensus 355 eiLe~~---~~~~f~~i~-~~lF~~ia~cl~S~hfqVAErAL~~w~N-----~~i~~li~~n~~~I~Pii~paL~~~s~~ 425 (504)
..|..+ .++....+. ..++..|..++.+++..|.+.|+....| +.....+.+ .-++|.|.+...
T Consensus 214 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~------~~~l~~L~~ll~- 286 (450)
T 2jdq_A 214 WALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILN------CSALQSLLHLLS- 286 (450)
T ss_dssp HHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT------TTHHHHHHHHTT-
T ss_pred HHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHH------CccHHHHHHHHc-
Confidence 222221 222222221 2466777788888888888888755532 111111111 123444444432
Q ss_pred cccHHHHHHHHHHHHHHHHhCH
Q 010682 426 HWNQAVLNLTQNVRKILCEMDE 447 (504)
Q Consensus 426 HWn~~Vr~la~~vlk~l~e~D~ 447 (504)
|-+..+|..|..++.-+..-++
T Consensus 287 ~~~~~vr~~a~~~L~~l~~~~~ 308 (450)
T 2jdq_A 287 SPKESIKKEACWTISNITAGNR 308 (450)
T ss_dssp CSSHHHHHHHHHHHHHHTTSCH
T ss_pred CCCHHHHHHHHHHHHHHHcCCH
Confidence 3477888888888877765443
No 38
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=48.90 E-value=55 Score=37.61 Aligned_cols=213 Identities=9% Similarity=0.082 Sum_probs=103.0
Q ss_pred HHHHH-hhcCC-CChHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHhhhcccCCcC--hHHHHHHHHHHHhccCCCc
Q 010682 209 IVRLL-DLFDS-EDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNG--IAELLEIFGSIISGFALPL 284 (504)
Q Consensus 209 i~~Ll-~lfdS-eDprERd~LktiLhrIY~Kf~~~R~fIrk~i~nif~~fi~e~e~hnG--IaELLeIlgSIIngfa~PL 284 (504)
|.+.+ ..++. .|+..|......|..+=..- . .. .+....+..+..++- -.=.+.+|...|+ .+
T Consensus 8 v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp-~---aw-----~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~----~l 74 (980)
T 3ibv_A 8 VENAVEAALDPSVGPIIKQQATDFIGSLRSSS-T---GW-----KICHEIFSEKTKYKPSTRLICLQTLSEKVR----EW 74 (980)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHHHHHST-T---HH-----HHHHHHTTCTTTSCHHHHHHHHHHHHHHHH----HC
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCh-h---HH-----HHHHHHHhCCCCCCHHHHHHHHHHHHHHHH----hC
Confidence 44445 34443 38888888888887653321 1 00 111111111110000 0012334445555 34
Q ss_pred hHH----HHHHHHHHHhhccCCC----CcccchhhHHHHHHHHHhcC-CCcHHHHHHHhhhhCCCCCC-hhHhHHHHHHH
Q 010682 285 KEE----HKIFLCRALIPLHKPK----SVGIYHQQLTYCVVQFIDKD-PKLATNAIKGLLKYWPVTNS-QKELMFISELE 354 (504)
Q Consensus 285 Kee----hk~Fl~~vLlPLhk~~----~~~~y~~qL~~ci~qF~~KD-p~La~~vi~~LLk~WP~tns-~KEvlFL~ele 354 (504)
.++ .+..+...|+.+...- .-...-.+|..+++.++..+ |.-=...+..|+..|-..+. .--..||.-+.
T Consensus 75 ~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~ 154 (980)
T 3ibv_A 75 NNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQSEFSNFYLKVLL 154 (980)
T ss_dssp CTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCChhHHHHHHHHHHH
Confidence 456 6777777777776531 11223467777777776543 22222233333333322232 22334565555
Q ss_pred HHHhhC-------Ch---------------HHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHh---hcchhHHHHhhhccc
Q 010682 355 EVLEMT-------SM---------------AEFQKIMVPLFRRIGCCLNSSHYQVAERAHLL---WNNEHILNLVTHNRQ 409 (504)
Q Consensus 355 eiLe~~-------~~---------------~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~---w~N~~i~~li~~n~~ 409 (504)
.|-|-+ +. ..+..+....+..+..|..+.+-.++..+|.. |-+---.+++.. .
T Consensus 155 ~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~--~ 232 (980)
T 3ibv_A 155 SIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVN--E 232 (980)
T ss_dssp HHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHC--H
T ss_pred HhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhc--c
Confidence 222211 11 11444466777888888877787877776643 433222233322 3
Q ss_pred cccccchHHHHHhhhhcccHHHHHHHHHHHHHHH
Q 010682 410 VIIPLVFPALERNTQNHWNQAVLNLTQNVRKILC 443 (504)
Q Consensus 410 ~I~Pii~paL~~~s~~HWn~~Vr~la~~vlk~l~ 443 (504)
.+++.+|..| . +..+|..|..++..+.
T Consensus 233 ~ll~~l~~~L----~---~~~~r~~A~ecL~ei~ 259 (980)
T 3ibv_A 233 PCMNLLYSFL----Q---IEELRCAACETMTEIV 259 (980)
T ss_dssp HHHHHHHHHT----T---SHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHc----C---ChHHHHHHHHHHHHHH
Confidence 3445554433 2 2678888888776654
No 39
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=47.84 E-value=1.4e+02 Score=33.87 Aligned_cols=220 Identities=12% Similarity=0.073 Sum_probs=101.6
Q ss_pred CCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhccCCC
Q 010682 204 VDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALP 283 (504)
Q Consensus 204 id~~Fi~~Ll~lfdSeDprERd~LktiLhrIY~Kf~~~R~fIrk~i~nif~~fi~e~e~hnGIaELLeIlgSIIngfa~P 283 (504)
.|-.-+.+++..+.++|..+|......|..+...- +.=... ..++.+=-...-++.| +.+|...|+..-..
T Consensus 13 ~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~p-~~~~~l----~~iL~~s~~~~vr~~a----a~~Lk~~i~~~W~~ 83 (1049)
T 3m1i_C 13 LDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNP-DAWQKA----DQILQFSTNPQSKFIA----LSILDKLITRKWKL 83 (1049)
T ss_dssp CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHST-TGGGGH----HHHHHHCSCHHHHHHH----HHHHHHHHHHTGGG
T ss_pred ccHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhCc-hHHHHH----HHHHhhCCCHHHHHHH----HHHHHHHHHhhCcc
Confidence 45555667777777788778877777776664321 100000 1111000000001111 11223333322134
Q ss_pred chHHHHHHHHHHHhhccCCCC--------cccchhhHHHHHHHHHhc-----CCCcHHHHHHHhhhhCCCCCC-hhH--h
Q 010682 284 LKEEHKIFLCRALIPLHKPKS--------VGIYHQQLTYCVVQFIDK-----DPKLATNAIKGLLKYWPVTNS-QKE--L 347 (504)
Q Consensus 284 LKeehk~Fl~~vLlPLhk~~~--------~~~y~~qL~~ci~qF~~K-----Dp~La~~vi~~LLk~WP~tns-~KE--v 347 (504)
+.++.+..+...|+.+..... -.....++..|+...... -|.+...++..+ - ++. .++ .
T Consensus 84 l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~----~-~~~~~~~~~l 158 (1049)
T 3m1i_C 84 LPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSS----S-SSVNVCENNM 158 (1049)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHH----T-TCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHH----c-cChHHHHHHH
Confidence 567788888888887765422 122345677777766543 344444444332 1 222 233 2
Q ss_pred HHHHHHHHHHhhCCh------------HHHHHHHHHHHHHHHHhhCC-CcHHHHHHHHHhhc---chhHHHHhhhccccc
Q 010682 348 MFISELEEVLEMTSM------------AEFQKIMVPLFRRIGCCLNS-SHYQVAERAHLLWN---NEHILNLVTHNRQVI 411 (504)
Q Consensus 348 lFL~eleeiLe~~~~------------~~f~~i~~~lF~~ia~cl~S-~hfqVAErAL~~w~---N~~i~~li~~n~~~I 411 (504)
.+|.-+-+.+..... +.+..-...+|..+..++.+ .+..|...||.... +-.-.+.+.. ..+
T Consensus 159 ~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~--~~l 236 (1049)
T 3m1i_C 159 IVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYE--TNI 236 (1049)
T ss_dssp HHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHS--SSH
T ss_pred HHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhh--hhH
Confidence 233333322221111 33455566777777777754 45566666664332 1000111111 223
Q ss_pred cccchHHHHHhhhhcccHHHHHHHHHHHHHHHHh
Q 010682 412 IPLVFPALERNTQNHWNQAVLNLTQNVRKILCEM 445 (504)
Q Consensus 412 ~Pii~paL~~~s~~HWn~~Vr~la~~vlk~l~e~ 445 (504)
++.++..+. . +..++..|..++.-+...
T Consensus 237 l~~l~~~~l----~--~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 237 LELLSTKFM----T--SPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HHHHHTHHH----H--SHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhC----C--CHhHHHHHHHHHHHHHhC
Confidence 444443221 1 566777777776666644
No 40
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=47.36 E-value=2.4e+02 Score=28.51 Aligned_cols=161 Identities=14% Similarity=0.082 Sum_probs=103.3
Q ss_pred CCcChHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhccCCCCcccchhhHHHHHHHHHhcCCCcHHHHHHHhhhhCCCC
Q 010682 262 RHNGIAELLEIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPKLATNAIKGLLKYWPVT 341 (504)
Q Consensus 262 ~hnGIaELLeIlgSIIngfa~PLKeehk~Fl~~vLlPLhk~~~~~~y~~qL~~ci~qF~~KDp~La~~vi~~LLk~WP~t 341 (504)
.+.|-.|..+++..+++-|+.+-.+.-+.- +-.+.-+-+. .++ .-.++..+.||-.-..+.++|+-
T Consensus 59 ~~f~~~e~t~lf~~v~kl~~s~d~~lKrLv-YLyl~~~~~~------~~e-~iLv~Nsl~kDl~~~N~~iR~lA------ 124 (355)
T 3tjz_B 59 EHLGTTEATEAFFAMTKLFQSNDPTLRRMC-YLTIKEMSCI------AED-VIIVTSSLTKDMTGKEDSYRGPA------ 124 (355)
T ss_dssp CCCCHHHHHHHHHHHHGGGGCCCHHHHHHH-HHHHHHHTTT------SSC-GGGGHHHHHHHHHSSCHHHHHHH------
T ss_pred CCCchhHHHHHHHHHHHHhcCCCHHHHHHH-HHHHHHhCCC------HHH-HHHHHHHHHhhcCCCcHhHHHHH------
Confidence 567888899999999999999866544432 2222222222 222 22666667776665567777764
Q ss_pred CChhHhHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcchhHHHHhhhccccccccchHHHHH
Q 010682 342 NSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWNNEHILNLVTHNRQVIIPLVFPALER 421 (504)
Q Consensus 342 ns~KEvlFL~eleeiLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N~~i~~li~~n~~~I~Pii~paL~~ 421 (504)
|.-+..|. .++ +..++..-+-+|+.+.|.-|.-.|+.-. ..++..+.+.+ .-.++.+.+
T Consensus 125 --------LRtL~~I~---~~~----m~~~l~~~lk~~L~d~~pyVRk~A~l~~-----~kL~~~~pe~v-~~~~~~l~~ 183 (355)
T 3tjz_B 125 --------VRALCQIT---DST----MLQAIERYMKQAIVDKVPSVSSSALVSS-----LHLLKCSFDVV-KRWVNEAQE 183 (355)
T ss_dssp --------HHHHHHHC---CTT----THHHHHHHHHHHHTCSSHHHHHHHHHHH-----HHHTTTCHHHH-HTTHHHHHH
T ss_pred --------HHHHhcCC---CHH----HHHHHHHHHHHHcCCCCHHHHHHHHHHH-----HHHhccCHHHH-HHHHHHHHH
Confidence 44555443 233 3457788899999999999999988653 34454444433 334555544
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Q 010682 422 NTQNHWNQAVLNLTQNVRKILCEMDEELVQACKRKLE 458 (504)
Q Consensus 422 ~s~~HWn~~Vr~la~~vlk~l~e~D~~lf~~c~~~~~ 458 (504)
.. .-=|..|+-.|..++.-+.+.|+..+.+....+.
T Consensus 184 ll-~d~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~ 219 (355)
T 3tjz_B 184 AA-SSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFT 219 (355)
T ss_dssp HT-TCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred Hh-cCCCccHHHHHHHHHHHHHhhchHHHHHHHHHHh
Confidence 33 3346777777888888888888877777766554
No 41
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=47.18 E-value=2.4e+02 Score=30.28 Aligned_cols=83 Identities=12% Similarity=0.184 Sum_probs=56.1
Q ss_pred hhhHH----HHHHHHHh---cCCCc-HHHHHHHhhhhCCCCCChhHhHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhh
Q 010682 309 HQQLT----YCVVQFID---KDPKL-ATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCL 380 (504)
Q Consensus 309 ~~qL~----~ci~qF~~---KDp~L-a~~vi~~LLk~WP~tns~KEvlFL~eleeiLe~~~~~~f~~i~~~lF~~ia~cl 380 (504)
+..+. +++..|.+ ..+.. ...+++.+.+.++..++.-+...|.-+..+.-.. |+ .+.. +-..+..|.
T Consensus 493 ~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~-p~-~~~~---i~~~l~~~~ 567 (621)
T 2vgl_A 493 HENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLF-PE-VKAT---IQDVLRSDS 567 (621)
T ss_dssp CHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHC-GG-GHHH---HHHHHSSHH
T ss_pred hHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHC-hH-HHHH---HHHHHHHHh
Confidence 44566 88888844 34433 3477889988888888777777777777775543 32 2222 333444555
Q ss_pred C--CCcHHHHHHHHHhhc
Q 010682 381 N--SSHYQVAERAHLLWN 396 (504)
Q Consensus 381 ~--S~hfqVAErAL~~w~ 396 (504)
. |.+..|=+||..+|.
T Consensus 568 ~~~~~d~evrdRA~~y~~ 585 (621)
T 2vgl_A 568 QLKNADVELQQRAVEYLR 585 (621)
T ss_dssp HHSCSSHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 5 999999999999884
No 42
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=47.16 E-value=1.5e+02 Score=33.01 Aligned_cols=29 Identities=3% Similarity=-0.129 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHhhcc
Q 010682 369 MVPLFRRIGCCLNSSHYQVAERAHLLWNN 397 (504)
Q Consensus 369 ~~~lF~~ia~cl~S~hfqVAErAL~~w~N 397 (504)
+..+|.....|+..+|.-++..|+.+|.+
T Consensus 827 l~~i~~~~~~~l~~~~~~~~~s~~~fl~~ 855 (971)
T 2x1g_F 827 YDRLVFYAQRGMTLPESGAIRNSIQFLTH 855 (971)
T ss_dssp HHHHHHHHHHHHTSSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 46788888888888888888889999965
No 43
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=44.45 E-value=19 Score=32.08 Aligned_cols=100 Identities=12% Similarity=0.142 Sum_probs=60.4
Q ss_pred CCCCCChhHhHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhc------chhHHHHhhhccccc
Q 010682 338 WPVTNSQKELMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWN------NEHILNLVTHNRQVI 411 (504)
Q Consensus 338 WP~tns~KEvlFL~eleeiLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~------N~~i~~li~~n~~~I 411 (504)
||.+. ..+.||..+.-.-..+.+..++.-|++++.. .|+| |.-.||.+.. ++.|+..+.+|...|
T Consensus 25 ~~~pg-----ylm~EIA~~T~~s~~~~~~eim~~L~kRL~~--k~~~--vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~I 95 (140)
T 1vdy_A 25 KVAPV-----YKLEEICDLLRSSHVSIVKEFSEFILKRLDN--KSPI--VKQKALRLIKYAVGKSGSEFRREMQRNSVAV 95 (140)
T ss_dssp SCCCH-----HHHHHHHHHHHHSCHHHHHHHHHHHHHHHTS--SSHH--HHHHHHHHHHHHTTTSCHHHHHHHHHTTHHH
T ss_pred CCCcH-----HHHHHHHHHHHhcchhHHHHHHHHHHHHhcC--CCcc--eeehHHHHHHHHHHhCCHHHHHHHHHhHHHH
Confidence 56554 3366777766444445578899999999886 3444 6677776553 466666666665433
Q ss_pred cccc-hHHHHHh-hhhcccHHHHHHHHHHHHHHHHhC
Q 010682 412 IPLV-FPALERN-TQNHWNQAVLNLTQNVRKILCEMD 446 (504)
Q Consensus 412 ~Pii-~paL~~~-s~~HWn~~Vr~la~~vlk~l~e~D 446 (504)
=-.. |-....- --.-.+..||..|..++.+|.+-+
T Consensus 96 k~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d~~ 132 (140)
T 1vdy_A 96 RNLFHYKGHPDPLKGDALNKAVRETAHETISAIFSEE 132 (140)
T ss_dssp HTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHhcCCCCCcccccchhHHHHHHHHHHHHHHhCcC
Confidence 1110 0000010 012367899999999999986543
No 44
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=44.05 E-value=3.8e+02 Score=29.94 Aligned_cols=33 Identities=18% Similarity=0.323 Sum_probs=27.0
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhh
Q 010682 206 HLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKF 238 (504)
Q Consensus 206 ~~Fi~~Ll~lfdSeDprERd~LktiLhrIY~Kf 238 (504)
..++..|+.++.|.|+..+...-.+|+.|..++
T Consensus 122 p~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~ 154 (960)
T 1wa5_C 122 PTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRW 154 (960)
T ss_dssp TTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGG
T ss_pred hHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 357888899999999888888888888887754
No 45
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=41.08 E-value=3.6e+02 Score=28.80 Aligned_cols=57 Identities=14% Similarity=0.162 Sum_probs=42.6
Q ss_pred cHHHHHHHhhhhCCCCCCh-----hHhHHHHHHHHHHhhCC-hHHHHHHHHHHHHHHHHhhCC
Q 010682 326 LATNAIKGLLKYWPVTNSQ-----KELMFISELEEVLEMTS-MAEFQKIMVPLFRRIGCCLNS 382 (504)
Q Consensus 326 La~~vi~~LLk~WP~tns~-----KEvlFL~eleeiLe~~~-~~~f~~i~~~lF~~ia~cl~S 382 (504)
+...+.+.++-.|-..... .++-+|.-+.++...+. .++-..++..||..|-..+=-
T Consensus 261 Fv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~~ymP~ 323 (507)
T 3u0r_A 261 FVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYMPL 323 (507)
T ss_dssp HHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHCCC
Confidence 4555666677777766665 78899999999999887 566677888888888766543
No 46
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=40.54 E-value=4.4e+02 Score=29.80 Aligned_cols=50 Identities=12% Similarity=0.052 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhCChHHHH---HHHHHHHHHHHHhhCCCcHHHHHHHHHhhcc
Q 010682 348 MFISELEEVLEMTSMAEFQ---KIMVPLFRRIGCCLNSSHYQVAERAHLLWNN 397 (504)
Q Consensus 348 lFL~eleeiLe~~~~~~f~---~i~~~lF~~ia~cl~S~hfqVAErAL~~w~N 397 (504)
-|+..+..++..+...-+. .....++.....|+..+|..+++.|+.+|.+
T Consensus 823 ~~f~ll~~i~~~~~~~l~~~~~~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~ 875 (1049)
T 3m1i_C 823 EFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALD 875 (1049)
T ss_dssp HHHHHHHHHHHHCTHHHHHSCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHcCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 3444555555443332221 1135677888899999999999999999954
No 47
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=40.26 E-value=4.2e+02 Score=30.85 Aligned_cols=32 Identities=9% Similarity=0.180 Sum_probs=25.1
Q ss_pred CCHHHHHHHHhhcCCCChHHHHHHHHHHHHHh
Q 010682 204 VDHLFIVRLLDLFDSEDPRERDCLKTVLHRIY 235 (504)
Q Consensus 204 id~~Fi~~Ll~lfdSeDprERd~LktiLhrIY 235 (504)
+|-.-+.+++..+.++|+.+|......|..+-
T Consensus 25 ~Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q 56 (1073)
T 3gjx_A 25 LDINLLDNVVNCLYHGEGAQQRMAQEVLTHLK 56 (1073)
T ss_dssp CSHHHHHHHHHTTTCSSHHHHHHHHHHHHTSS
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 56667788888888889988888888886543
No 48
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=39.33 E-value=73 Score=28.27 Aligned_cols=88 Identities=17% Similarity=0.311 Sum_probs=53.3
Q ss_pred HHHHHhhC-ChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhc------chhHHHHhhhcccccccc-chHHHHHhhh
Q 010682 353 LEEVLEMT-SMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWN------NEHILNLVTHNRQVIIPL-VFPALERNTQ 424 (504)
Q Consensus 353 leeiLe~~-~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~------N~~i~~li~~n~~~I~Pi-i~paL~~~s~ 424 (504)
|.+|...+ +.++|..||.-|.+||.. ...+..+.-.||.+.. ++.++.-+.++...|..+ =|.-+.. .-
T Consensus 26 m~eIa~~T~~~~~~~~Im~~l~kRL~d--~~k~Wr~vyKaL~lleyLl~nGse~vv~~~~~~~~~i~~L~~F~y~d~-~g 102 (144)
T 1eyh_A 26 MSEIADLTYNVVAFSEIMSMIWKRLND--HGKNWRHVYKAMTLMEYLIKTGSERVSQQCKENMYAVQTLKDFQYVDR-DG 102 (144)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHHHHSC--CGGGHHHHHHHHHHHHHHHHHSCHHHHHHHHHTHHHHHGGGGCCCBCT-TS
T ss_pred HHHHHHHhCCHhhHHHHHHHHHHHHcc--CCcchHHHhHHHHHHHHHHHhCCHHHHHHHHHhhHHHhhhccceeeCC-Cc
Confidence 45566554 678899999999998863 2257888888887662 233333333332222111 0000001 12
Q ss_pred hcccHHHHHHHHHHHHHHH
Q 010682 425 NHWNQAVLNLTQNVRKILC 443 (504)
Q Consensus 425 ~HWn~~Vr~la~~vlk~l~ 443 (504)
.-|...||..|..++.+|.
T Consensus 103 ~D~G~~VR~kak~l~~Ll~ 121 (144)
T 1eyh_A 103 KDQGVNVREKAKQLVALLR 121 (144)
T ss_dssp CBCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHC
Confidence 3488899999999999996
No 49
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=32.77 E-value=2e+02 Score=25.59 Aligned_cols=92 Identities=15% Similarity=0.230 Sum_probs=56.3
Q ss_pred HHHHHhhC-ChHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhc------chhHHHHhhhccccccccchHHHH--Hhh
Q 010682 353 LEEVLEMT-SMAEFQKIMVPLFRRIGCCLNSSHYQVAERAHLLWN------NEHILNLVTHNRQVIIPLVFPALE--RNT 423 (504)
Q Consensus 353 leeiLe~~-~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL~~w~------N~~i~~li~~n~~~I~Pii~paL~--~~s 423 (504)
+.+|...+ +..+|..||.-|.+||...- ..+....-.||.+.. .+.++.-+.+|...|=. + .... ...
T Consensus 32 m~eIa~~T~~~~~~~eIm~~l~kRL~d~~-~k~WR~vyKaL~lLeyLl~nGse~vv~~~r~~~~~i~~-L-~~F~~~d~~ 108 (150)
T 3onk_A 32 MDQISQGTYNFREREEILSMIFRRFTEKA-GSEWRQIYKALQLLDYLIKHGSERFIDDTRNSINLIRI-L-ETFHYIDSQ 108 (150)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHHHHHSCC-STTHHHHHHHHHHHHHHHHHSCHHHHHHHHTTHHHHHG-G-GGCCCBCTT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHcccc-cchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh-h-hcccccCCC
Confidence 44555544 78999999999999988421 136788888886662 24444444444322211 1 1100 011
Q ss_pred hhcccHHHHHHHHHHHHHHHHhCHHH
Q 010682 424 QNHWNQAVLNLTQNVRKILCEMDEEL 449 (504)
Q Consensus 424 ~~HWn~~Vr~la~~vlk~l~e~D~~l 449 (504)
-..|-..||..|..++.+|. |++.
T Consensus 109 G~D~G~~VR~kak~l~~LL~--D~e~ 132 (150)
T 3onk_A 109 GRDQGINVRTRVKALIELLS--DDNK 132 (150)
T ss_dssp SCBCHHHHHHHHHHHHHHHT--CHHH
T ss_pred CCchHHHHHHHHHHHHHHHc--CHHH
Confidence 23588999999999999995 5443
No 50
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=32.68 E-value=5.6e+02 Score=28.56 Aligned_cols=72 Identities=13% Similarity=0.199 Sum_probs=41.3
Q ss_pred CchHHHHHHHHHHHhhccCCCCcccchhhHHHHHHHHHhcC-----CCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHH
Q 010682 283 PLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKD-----PKLATNAIKGLLKYWPVTNSQKELMFISELEEVL 357 (504)
Q Consensus 283 PLKeehk~Fl~~vLlPLhk~~~~~~y~~qL~~ci~qF~~KD-----p~La~~vi~~LLk~WP~tns~KEvlFL~eleeiL 357 (504)
.+.++.+..++..|+....... ..-..++..||......| |.|...++..+ -..+.....-.|.-+.+|+
T Consensus 77 ~l~~~~k~~ik~~ll~~l~~~~-~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l----~s~~~~~~~~aL~~l~~i~ 151 (960)
T 1wa5_C 77 LLPANNVELIKKEIVPLMISLP-NNLQVQIGEAISSIADSDFPDRWPTLLSDLASRL----SNDDMVTNKGVLTVAHSIF 151 (960)
T ss_dssp SSCHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTC----CSSCTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHh----CCCCHHHHHHHHHHHHHHH
Confidence 3567788888878877655433 444567888888776543 55555444433 1233333344455555566
Q ss_pred hh
Q 010682 358 EM 359 (504)
Q Consensus 358 e~ 359 (504)
+.
T Consensus 152 ~~ 153 (960)
T 1wa5_C 152 KR 153 (960)
T ss_dssp GG
T ss_pred HH
Confidence 53
No 51
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=32.27 E-value=73 Score=36.60 Aligned_cols=82 Identities=16% Similarity=0.173 Sum_probs=55.5
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHhhhhhc-chHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhccCCCchHHH
Q 010682 210 VRLLDLFDSEDPRERDCLKTVLHRIYGKFMA-HRQFIRQAVCNIIYRFVFETERHNGIAELLEIFGSIISGFALPLKEEH 288 (504)
Q Consensus 210 ~~Ll~lfdSeDprERd~LktiLhrIY~Kf~~-~R~fIrk~i~nif~~fi~e~e~hnGIaELLeIlgSIIngfa~PLKeeh 288 (504)
.+.++.+. .|.+=|+.....+||+...+.. ..|++-+.+..++ ..-...++++.|.++|.+|.+| |.++
T Consensus 705 l~~l~~~~-~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll-----~~~~~~e~~~fL~l~~qli~~f----~~~~ 774 (980)
T 3ibv_A 705 FLILDRMG-FNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILL-----NSIDMNELVDVLSFISQLIHIY----KDNM 774 (980)
T ss_dssp HHHHHHSC-CSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHH-----HHCCTTTHHHHHHHHHHHHHHT----TTTS
T ss_pred HHHHHhcC-CcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHHHHHH----HHHH
Confidence 34455544 5677777799999999775533 4555666655544 1224677999999999999999 4456
Q ss_pred HHHHHHHHhhccC
Q 010682 289 KIFLCRALIPLHK 301 (504)
Q Consensus 289 k~Fl~~vLlPLhk 301 (504)
..++...|-||..
T Consensus 775 ~~~l~~ll~~l~~ 787 (980)
T 3ibv_A 775 MEITNRMLPTLLM 787 (980)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666544
No 52
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Probab=32.22 E-value=35 Score=25.52 Aligned_cols=46 Identities=24% Similarity=0.390 Sum_probs=37.2
Q ss_pred HHHHHHHhccCCCchHHHHHHHHHHHhhccCCCCcccchhhHHHHHHH
Q 010682 271 EIFGSIISGFALPLKEEHKIFLCRALIPLHKPKSVGIYHQQLTYCVVQ 318 (504)
Q Consensus 271 eIlgSIIngfa~PLKeehk~Fl~~vLlPLhk~~~~~~y~~qL~~ci~q 318 (504)
+++.|+|+.-. |.++||.++...|=..-..+.+..|||-|...|..
T Consensus 5 sViRSvikSS~--l~~~hK~~ml~LL~dikg~~dL~eF~qMl~~I~~~ 50 (56)
T 1oks_A 5 SVIRSIIKSSR--LEEDRKRYLMTLLDDIKGANDLAKFHQMLVKIIMK 50 (56)
T ss_dssp HHHHHHHHHSC--SCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc--cchHHHHHHHHHHHHccccchHHHHHHHHHHHHHH
Confidence 46678887653 68999999998888888889999999988777654
No 53
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=32.06 E-value=4.3e+02 Score=27.07 Aligned_cols=108 Identities=13% Similarity=0.052 Sum_probs=60.4
Q ss_pred ChHHhhhcCCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhhhcchHHHHHH-HHHHHHHhhhcccCCcChHH----HH
Q 010682 196 DVKVAKKYVDHLFIVRLLDLFDSEDPRERDCLKTVLHRIYGKFMAHRQFIRQA-VCNIIYRFVFETERHNGIAE----LL 270 (504)
Q Consensus 196 d~~~~k~~id~~Fi~~Ll~lfdSeDprERd~LktiLhrIY~Kf~~~R~fIrk~-i~nif~~fi~e~e~hnGIaE----LL 270 (504)
++...+..++..-|-.|+.++.|+|+.-|+..-..|..|-+.-...|..+... .-..+...+........... +.
T Consensus 132 ~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~ 211 (510)
T 3ul1_B 132 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT 211 (510)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHH
Confidence 34444555666678889999999999999999999988876555556655432 23345555533222222222 23
Q ss_pred HHHHHHHhccCCCchHHHHHHHHHHHhhccCCC
Q 010682 271 EIFGSIISGFALPLKEEHKIFLCRALIPLHKPK 303 (504)
Q Consensus 271 eIlgSIIngfa~PLKeehk~Fl~~vLlPLhk~~ 303 (504)
..+..+..+-..........-...+|..|....
T Consensus 212 ~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~ 244 (510)
T 3ul1_B 212 WTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 244 (510)
T ss_dssp HHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHhhcccchhHHHHHHhHHHHHHHHHhcC
Confidence 334444444322222223223345555665554
No 54
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=31.69 E-value=3.6e+02 Score=26.05 Aligned_cols=63 Identities=10% Similarity=0.006 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHHHhcCCCChHHhhhcCCHHHHHHHHh-hcCCCChHHHHHHHHHHHHHhhhhhcchHH
Q 010682 178 HLQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLD-LFDSEDPRERDCLKTVLHRIYGKFMAHRQF 244 (504)
Q Consensus 178 HLqlVYeillrfv~s~~~d~~~~k~~id~~Fi~~Ll~-lfdSeDprERd~LktiLhrIY~Kf~~~R~f 244 (504)
|-....+.|..++.+. ..+..+....-+..|+. ++.|+++.=|...-.+|-.|-+.-...|..
T Consensus 56 ~k~~Al~~L~~lv~~~----dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~ 119 (296)
T 1xqr_A 56 EREGALELLADLCENM----DNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQ 119 (296)
T ss_dssp HHHHHHHHHHHHHTSH----HHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCh----hhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4556677777888743 33444444445778999 999999999999999998776654444433
No 55
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=28.41 E-value=6.4e+02 Score=27.90 Aligned_cols=213 Identities=7% Similarity=0.000 Sum_probs=103.1
Q ss_pred chhhHHHHHHHHHHHhcCCCCh--------------HHhhhcCCHHHHHHHHhhcCC--CChHHHHHHHHHHHHHhhhh-
Q 010682 176 WSHLQIVYDLLLRFVSYGSLDV--------------KVAKKYVDHLFIVRLLDLFDS--EDPRERDCLKTVLHRIYGKF- 238 (504)
Q Consensus 176 WpHLqlVYeillrfv~s~~~d~--------------~~~k~~id~~Fi~~Ll~lfdS--eDprERd~LktiLhrIY~Kf- 238 (504)
+.+|.-|.+.+++.+. +.... +....|++ .++..|+.++++ -|.+++..+-..+-.|....
T Consensus 541 ~~~l~~vl~~l~~~l~-~~v~~~A~~al~~l~~~~~~~l~p~~~-~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~ 618 (971)
T 2x1g_F 541 PAYIPPAINLLVRGLN-SSMSAQATLGLKELCRDCQLQLKPYAD-PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR 618 (971)
T ss_dssp --CHHHHHHHHHHHHH-SSCHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHhccccHH-HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC
Confidence 4678888887777662 33221 11223432 456667778887 46889999888888887643
Q ss_pred -hcchHHHHHHHHHHH---HHhhhccc----CCcChHHHHHHHHHHHhccCCCc-------------hHHHHHHHHHHHh
Q 010682 239 -MAHRQFIRQAVCNII---YRFVFETE----RHNGIAELLEIFGSIISGFALPL-------------KEEHKIFLCRALI 297 (504)
Q Consensus 239 -~~~R~fIrk~i~nif---~~fi~e~e----~hnGIaELLeIlgSIIngfa~PL-------------Keehk~Fl~~vLl 297 (504)
...-+++.+.+..++ .+.+.+.. .-.-+.+.|+.++.++.+..... .+--. -+..++.
T Consensus 619 ~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~i~~~l~ 697 (971)
T 2x1g_F 619 PEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQ-RTMPIFK 697 (971)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHH-TTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHH-HHHHHHH
Confidence 222333433332222 22222111 11235667788888877654321 11101 1111111
Q ss_pred hccCC--CCcccchhhHHHHHHH---HHhcC-CCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHhhCChH-H----HH
Q 010682 298 PLHKP--KSVGIYHQQLTYCVVQ---FIDKD-PKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMA-E----FQ 366 (504)
Q Consensus 298 PLhk~--~~~~~y~~qL~~ci~q---F~~KD-p~La~~vi~~LLk~WP~tns~KEvlFL~eleeiLe~~~~~-~----f~ 366 (504)
-+... ... ........++.. .+.++ ..+.+.++.+|+...-.+ .+..||+-+..++.....+ + +.
T Consensus 698 ~~l~~~~~~~-~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~---~~~~~l~l~~~~i~~~~~~~~~~~~l~ 773 (971)
T 2x1g_F 698 RIAEMWVEEI-DVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTR---CCAPTLEISKTAIVMFFKDEGCKPLMQ 773 (971)
T ss_dssp HHHHHTTTCH-HHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC-----CCHHHHHHHHHHHTTCCC-----HHHH
T ss_pred HHHHhccccH-HHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhCCCcchHHHHH
Confidence 11111 111 111122222222 11222 235677888888776543 3478999999999877553 2 33
Q ss_pred HHHHHHHHHHHHhhCC-------CcHHHHHHHHHhh
Q 010682 367 KIMVPLFRRIGCCLNS-------SHYQVAERAHLLW 395 (504)
Q Consensus 367 ~i~~~lF~~ia~cl~S-------~hfqVAErAL~~w 395 (504)
.+..+++..+-..+++ .+-.|++..+.+.
T Consensus 774 ~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll 809 (971)
T 2x1g_F 774 QLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCL 809 (971)
T ss_dssp HHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHH
Confidence 3334444433333333 3556777766554
No 56
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=28.05 E-value=95 Score=27.29 Aligned_cols=86 Identities=10% Similarity=0.189 Sum_probs=59.6
Q ss_pred hHHHHHHHHHhcCCCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHhhCCh----------HHHHHHHHHHHHHHHHhh
Q 010682 311 QLTYCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSM----------AEFQKIMVPLFRRIGCCL 380 (504)
Q Consensus 311 qL~~ci~qF~~KDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeiLe~~~~----------~~f~~i~~~lF~~ia~cl 380 (504)
+-..-++..+..+.+.+..++..+.++--++.+.+.+.+|.-+..|+..... ..|.+.+..+|..+..|-
T Consensus 24 ~~I~~LT~~a~~~~~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~f~~~~~~~ 103 (145)
T 3d9j_A 24 AKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCP 103 (145)
T ss_dssp HHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHHHHHHHhCC
Confidence 3444455666666666666666666666667778888999999988854322 356677777887666554
Q ss_pred CCCcHHHHHHHHHhhcc
Q 010682 381 NSSHYQVAERAHLLWNN 397 (504)
Q Consensus 381 ~S~hfqVAErAL~~w~N 397 (504)
..+-.-.+|-+.+|..
T Consensus 104 -~~~r~kl~rLl~iW~~ 119 (145)
T 3d9j_A 104 -GDDKSKIVRVLNLWQK 119 (145)
T ss_dssp -GGGHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhcC
Confidence 6777778889999973
No 57
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=27.44 E-value=2.6e+02 Score=26.96 Aligned_cols=98 Identities=15% Similarity=0.169 Sum_probs=54.2
Q ss_pred HHHHHHHhcCCCcHHHHHHHhhhhCCCCCChhH--hHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhCCCcHHHHHHH
Q 010682 314 YCVVQFIDKDPKLATNAIKGLLKYWPVTNSQKE--LMFISELEEVLEMTSMAEFQKIMVPLFRRIGCCLNSSHYQVAERA 391 (504)
Q Consensus 314 ~ci~qF~~KDp~La~~vi~~LLk~WP~tns~KE--vlFL~eleeiLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErA 391 (504)
+.-..-+.+||.|.+.++++++-+ .+++.-+ -...+.|+++... .++ +...+..-|...++.....|..+|
T Consensus 38 qa~el~~~~dp~ll~~~l~~il~~--~~~~~~~vrk~~~~Fi~e~~~~-k~~----l~~~~l~~L~~Ll~d~d~~V~K~~ 110 (257)
T 3gs3_A 38 KVQETVLGSCAELAEEFLESVLSL--AHDSNMEVRKQVVAFVEQVCKV-KVE----LLPHVINVVSMLLRDNSAQVIKRV 110 (257)
T ss_dssp HHHHHHTTTTGGGHHHHHHHHHGG--GGCSCHHHHHHHHHHHHHHHHH-CGG----GHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHccCHhHHHHHHHHHHHh--ccCChHHHHHHHHHHHHHHHHH-HHH----HHHHHHHHHHHHHcCCCHHHHHHH
Confidence 333334678999999999999986 2333222 2234445555422 122 333444444444556666777776
Q ss_pred HHhhcchhHHHHhhhccccccccchHHHHHhh------hhcccHHH
Q 010682 392 HLLWNNEHILNLVTHNRQVIIPLVFPALERNT------QNHWNQAV 431 (504)
Q Consensus 392 L~~w~N~~i~~li~~n~~~I~Pii~paL~~~s------~~HWn~~V 431 (504)
+... ..+||.+|--+..+. ...|+.-.
T Consensus 111 I~~~-------------~~iY~~~l~~i~~~~~~~~~~~~~W~~m~ 143 (257)
T 3gs3_A 111 IQAC-------------GSIYKNGLQYLCSLMEPGDSAEQAWNILS 143 (257)
T ss_dssp HHHH-------------HHHHHHHHHHHTTSSSCCHHHHHHHHHHH
T ss_pred HHHH-------------HHHHHHHHHHHhcCCCCcchHHHHHHHHH
Confidence 6554 345666666665553 35676443
No 58
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=27.22 E-value=7.1e+02 Score=27.99 Aligned_cols=73 Identities=19% Similarity=0.213 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHhcCCCChHHhhhcCCHHHHHHHHhhc----------------CCCChHHHHHHHHHHHHHhhhhhcch
Q 010682 179 LQIVYDLLLRFVSYGSLDVKVAKKYVDHLFIVRLLDLF----------------DSEDPRERDCLKTVLHRIYGKFMAHR 242 (504)
Q Consensus 179 LqlVYeillrfv~s~~~d~~~~k~~id~~Fi~~Ll~lf----------------dSeDprERd~LktiLhrIY~Kf~~~R 242 (504)
.+.|-++-.+|=.+-..+.. +++| +.-|=++| +++--|-++.+.++|.|.|..-..-|
T Consensus 18 ~~~~~~l~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~q~~~~s~ 91 (778)
T 3opb_A 18 SSTIDSLCAAFDKTLKSTPD-VQKY-----NDAINTIFQLRQKSESGKMPADLTNSEALKDRQKIEEILTRSYQDHSESR 91 (778)
T ss_dssp HHHHHHHHHHHHHTTTSCTT-HHHH-----HHHHHHHTTTTCSTGGGCCCTTTSSSTTHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhHHHHHHHHHhcccCCCCC-hHHH-----HHHHHHHHhcccccccccccccccchhhcccHHHHHHHHHHHhhCcHHHH
Confidence 56777777777554322211 2334 33343444 34555668889999999998888888
Q ss_pred HHHHHHHHHHHHHhh
Q 010682 243 QFIRQAVCNIIYRFV 257 (504)
Q Consensus 243 ~fIrk~i~nif~~fi 257 (504)
.++.+.|.+-.-+|+
T Consensus 92 ~~l~~~~~~~~~~~l 106 (778)
T 3opb_A 92 VHLSKLIQNDIPFAL 106 (778)
T ss_dssp HHHHHHHHHTHHHHH
T ss_pred HHHHHHHHhChHHHH
Confidence 888877776444443
No 59
>3bbz_A P protein, phosphoprotein; molten globule, viral protein, replication; 2.10A {Mumps virus}
Probab=26.51 E-value=59 Score=23.97 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=25.9
Q ss_pred CChHHhHHHHHHHHhcCcccccccCCCcCchhHHHHHHHHH
Q 010682 79 VSNTQKQNLFVSKLNLCCEVSDFSDSDKVTAEQDLKRQTLI 119 (504)
Q Consensus 79 v~~~e~~~lf~~Kl~~C~~i~DF~dp~~d~~~Ke~K~~tL~ 119 (504)
+|++....-|..||..|...-|| |++||..+.
T Consensus 15 i~np~~r~~Fe~ki~~~~tE~q~---------k~iKr~IIR 46 (49)
T 3bbz_A 15 VANPQMKQAFEQRLAKASTEDAL---------NDIKRDIIR 46 (49)
T ss_dssp CCSHHHHHHHHHHHHTCCSHHHH---------HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHH---------HHHHHHHHH
Confidence 56777788899999999998887 677877654
No 60
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=25.04 E-value=3e+02 Score=24.48 Aligned_cols=80 Identities=14% Similarity=0.177 Sum_probs=53.1
Q ss_pred HHHHHhcCCCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHhhCChHHHHHHH-HHHHHHHHHhh-CCCcHHHHHHHHH
Q 010682 316 VVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEFQKIM-VPLFRRIGCCL-NSSHYQVAERAHL 393 (504)
Q Consensus 316 i~qF~~KDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeiLe~~~~~~f~~i~-~~lF~~ia~cl-~S~hfqVAErAL~ 393 (504)
|...+..++.-+..+++.|.|.=-..|+.-+..-|..++.++..+.+.--..+. ..+...+.+.+ ...|.+|-++++.
T Consensus 39 icD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~ 118 (163)
T 1x5b_A 39 ICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKS 118 (163)
T ss_dssp HHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHH
Confidence 446677788888888888877666678898999999999998888753322221 11112222222 3478899999886
Q ss_pred hh
Q 010682 394 LW 395 (504)
Q Consensus 394 ~w 395 (504)
+.
T Consensus 119 li 120 (163)
T 1x5b_A 119 LM 120 (163)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 61
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=20.90 E-value=3.2e+02 Score=23.62 Aligned_cols=77 Identities=8% Similarity=0.125 Sum_probs=54.2
Q ss_pred HHHHHHhcCCCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHhhCChHHH-----HHHHHHHHHHHHHhhCCCcHHHHH
Q 010682 315 CVVQFIDKDPKLATNAIKGLLKYWPVTNSQKELMFISELEEVLEMTSMAEF-----QKIMVPLFRRIGCCLNSSHYQVAE 389 (504)
Q Consensus 315 ci~qF~~KDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeiLe~~~~~~f-----~~i~~~lF~~ia~cl~S~hfqVAE 389 (504)
-|...+..++.-+..+++.|.|.=-..|+.-+..-|..++.++..+.+.-- ...+..+.+.+ +..|.+|-+
T Consensus 28 eicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~----~~~~~~Vk~ 103 (140)
T 3ldz_A 28 DICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVL----NKGHPKVCE 103 (140)
T ss_dssp HHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHH----HHSCHHHHH
T ss_pred HHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHh----ccCCHHHHH
Confidence 345567888888888888888777778888888889999888888765332 22233333322 347889999
Q ss_pred HHHHhh
Q 010682 390 RAHLLW 395 (504)
Q Consensus 390 rAL~~w 395 (504)
+++.+.
T Consensus 104 kil~li 109 (140)
T 3ldz_A 104 KLKALM 109 (140)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987654
Done!