BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010683
(504 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 133/295 (45%), Gaps = 45/295 (15%)
Query: 72 IKICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHT 128
I+I + G LA+ G + WG N L TE S P + F G
Sbjct: 111 IRIKQIACGDSHCLAVTXEGEVQSWGRNQNGQLGLGDTE------DSLVPQKIQAFEGIR 164
Query: 129 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 188
+ VA G+EH A+ ED Y WG G LGLGDR RL P+ + + +
Sbjct: 165 IKXVAAGAEHTAAVT--------EDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEK 216
Query: 189 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 248
V CG HT +++ +T+G + GQLGHG + L+P +++ L
Sbjct: 217 ---XSXVACGWRHTISVSY--------SGALYTYGWSKYGQLGHGDLEDHLIPHKLEALS 265
Query: 249 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGN 306
++ + G HT ++S G ++ WG K +G+ N D SP+ +
Sbjct: 266 NS-FISQISGGARHTXALTSDGKLYGWGWNKFGQVGVGNNL--------DQCSPVQV--- 313
Query: 307 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 361
P Q VQV+CG HT+ VT+ +++WGRG +G LG G+++D P I+
Sbjct: 314 --RFPDDQKVVQVSCGWRHTLAVTERN-NVFAWGRGTNGQLGIGESVDRNFPKII 365
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 128/290 (44%), Gaps = 38/290 (13%)
Query: 71 PIKICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 130
P K+ + AG S+A+ + + WG + G +P+ + GH +V
Sbjct: 5 PRKVLIISAGASHSVALLSGDIVCSWGR---GEDGQLGHGDAEDRPSPTQLSALDGHQIV 61
Query: 131 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 190
V CG++H VA +G YSWG + G+LG G+ P I+ +
Sbjct: 62 SVTCGADHTVAYSQSGXE-------VYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIR-- 112
Query: 191 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 250
+ ++ CG H +T E ++G +NGQLG G T+ +LVP++++ +
Sbjct: 113 -IKQIACGDSHCLAVT--------XEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAF-EG 162
Query: 251 VYLVSVDCGLFHTSVVSSAGDV--WSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 308
+ + V G HT+ V+ GD+ W WG LGL + D + P ++ G
Sbjct: 163 IRIKXVAAGAEHTAAVTEDGDLYGWGWGRYGNLGL--------GDRTDRLVPERVTSTG- 213
Query: 309 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 358
G K VACG HT+ V+ G L+++G + G LG G D P
Sbjct: 214 -GEKXS---XVACGWRHTISVSYSG-ALYTYGWSKYGQLGHGDLEDHLIP 258
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 76/185 (41%), Gaps = 29/185 (15%)
Query: 73 KICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 132
K V G ++++ +GAL+ +G G L P + + ++
Sbjct: 216 KXSXVACGWRHTISVSYSGALYTYG---WSKYGQLGHGDLEDHLIPHKLEALSNSFISQI 272
Query: 133 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 192
+ G+ H AL S G+ Y WG N GQ+G+G+ + P + F D V
Sbjct: 273 SGGARHTXALTSDGK--------LYGWGWNKFGQVGVGNNLDQCSPVQVR-FPDDQK--V 321
Query: 193 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 252
+V+CG HT +T R + +G G NGQLG G + + P+ +
Sbjct: 322 VQVSCGWRHTLAVTERNN--------VFAWGRGTNGQLGIGESVD-------RNFPKIIE 366
Query: 253 LVSVD 257
+SVD
Sbjct: 367 ALSVD 371
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 134/295 (45%), Gaps = 45/295 (15%)
Query: 72 IKICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHT 128
I+I + G LA+ G + WG N L TE S P + F G
Sbjct: 109 IRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTE------DSLVPQKIQAFEGIR 162
Query: 129 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 188
+ VA G+EH A+ ED Y WG G LGLGDR RL P+ + + +
Sbjct: 163 IKMVAAGAEHTAAVT--------EDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEK 214
Query: 189 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 248
+ V CG HT +++ +T+G + GQLGHG + L+P +++ L
Sbjct: 215 ---MSMVACGWRHTISVSY--------SGALYTYGWSKYGQLGHGDLEDHLIPHKLEALS 263
Query: 249 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGN 306
++ + G HT ++S G ++ WG K +G+ N D SP+ +
Sbjct: 264 NS-FISQISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNL--------DQCSPVQV--- 311
Query: 307 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 361
P Q VQV+CG HT+ VT+ +++WGRG +G LG G+++D P I+
Sbjct: 312 --RFPDDQKVVQVSCGWRHTLAVTERN-NVFAWGRGTNGQLGIGESVDRNFPKII 363
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 130/290 (44%), Gaps = 38/290 (13%)
Query: 71 PIKICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 130
P K+ + AG S+A+ + + WG + G +P+ + GH +V
Sbjct: 3 PRKVLIISAGASHSVALLSGDIVCSWGR---GEDGQLGHGDAEDRPSPTQLSALDGHQIV 59
Query: 131 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 190
V CG++H VA +G + YSWG + G+LG G+ P I+ +
Sbjct: 60 SVTCGADHTVAYSQSG-------MEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIR-- 110
Query: 191 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 250
+ ++ CG H +T +E ++G +NGQLG G T+ +LVP++++ +
Sbjct: 111 -IKQIACGDSHCLAVT--------MEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAF-EG 160
Query: 251 VYLVSVDCGLFHTSVVSSAGDV--WSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 308
+ + V G HT+ V+ GD+ W WG LGL + D + P ++ G
Sbjct: 161 IRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGL--------GDRTDRLVPERVTSTG- 211
Query: 309 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 358
G K VACG HT+ V+ G L+++G + G LG G D P
Sbjct: 212 -GEKMS---MVACGWRHTISVSYSG-ALYTYGWSKYGQLGHGDLEDHLIP 256
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 74/175 (42%), Gaps = 22/175 (12%)
Query: 73 KICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 132
K+ V G ++++ +GAL+ +G G L P + + ++
Sbjct: 214 KMSMVACGWRHTISVSYSGALYTYG---WSKYGQLGHGDLEDHLIPHKLEALSNSFISQI 270
Query: 133 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 192
+ G H +AL S G+ Y WG N GQ+G+G+ + P + F D V
Sbjct: 271 SGGFRHTMALTSDGK--------LYGWGWNKFGQVGVGNNLDQCSPVQVR-FPDDQK--V 319
Query: 193 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 247
+V+CG HT +T R + +G G NGQLG G + P+ ++ L
Sbjct: 320 VQVSCGWRHTLAVTERNN--------VFAWGRGTNGQLGIGESVDRNFPKIIEAL 366
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 11/114 (9%)
Query: 74 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 133
I + G ++A+ + G L+ WG S P V VV+V+
Sbjct: 267 ISQISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCS---PVQVRFPDDQKVVQVS 323
Query: 134 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 187
CG H +A+ E ++WG NGQLG+G+ R PKIIE + D
Sbjct: 324 CGWRHTLAVT--------ERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVD 369
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 134/295 (45%), Gaps = 45/295 (15%)
Query: 72 IKICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHT 128
I+I + G LA+ G + WG N L TE S P + F G
Sbjct: 121 IRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTE------DSLVPQKIQAFEGIR 174
Query: 129 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 188
+ VA G+EH A+ ED Y WG G LGLGDR RL P+ + + +
Sbjct: 175 IKMVAAGAEHTAAVT--------EDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEK 226
Query: 189 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 248
+ V CG HT +++ +T+G + GQLGHG + L+P +++ L
Sbjct: 227 ---MSMVACGWRHTISVSY--------SGALYTYGWSKYGQLGHGDLEDHLIPHKLEALS 275
Query: 249 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGN 306
++ + G HT ++S G ++ WG K +G+ N D SP+ +
Sbjct: 276 NS-FISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNL--------DQCSPVQV--- 323
Query: 307 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 361
P Q VQV+CG HT+ VT+ +++WGRG +G LG G+++D P I+
Sbjct: 324 --RFPDDQKVVQVSCGWRHTLAVTERN-NVFAWGRGTNGQLGIGESVDRNFPKII 375
Score = 91.7 bits (226), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 130/290 (44%), Gaps = 38/290 (13%)
Query: 71 PIKICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 130
P K+ + AG S+A+ + + WG + G +P+ + GH +V
Sbjct: 15 PRKVLIISAGASHSVALLSGDIVCSWGRG---EDGQLGHGDAEDRPSPTQLSALDGHQIV 71
Query: 131 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 190
V CG++H VA +G + YSWG + G+LG G+ P I+ +
Sbjct: 72 SVTCGADHTVAYSQSG-------MEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIR-- 122
Query: 191 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 250
+ ++ CG H +T +E ++G +NGQLG G T+ +LVP++++ +
Sbjct: 123 -IKQIACGDSHCLAVT--------MEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAF-EG 172
Query: 251 VYLVSVDCGLFHTSVVSSAGDV--WSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 308
+ + V G HT+ V+ GD+ W WG LGL + D + P ++ G
Sbjct: 173 IRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGL--------GDRTDRLVPERVTSTG- 223
Query: 309 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 358
G K VACG HT+ V+ G L+++G + G LG G D P
Sbjct: 224 -GEKMS---MVACGWRHTISVSYSG-ALYTYGWSKYGQLGHGDLEDHLIP 268
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 13/120 (10%)
Query: 239 LVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAI 298
+ ++V P+ V ++S G H+ + S V SWG + + L +A D
Sbjct: 6 MAADEVTAPPRKVLIIS--AGASHSVALLSGDIVCSWGRGE------DGQLGHGDAEDRP 57
Query: 299 SPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 358
SP +S H V V CGA HTV + G +++SWG G G LG G + D F P
Sbjct: 58 SPTQLSALDGH-----QIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTP 112
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 77/185 (41%), Gaps = 29/185 (15%)
Query: 73 KICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 132
K+ V G ++++ +GAL+ +G G L P + + ++
Sbjct: 226 KMSMVACGWRHTISVSYSGALYTYG---WSKYGQLGHGDLEDHLIPHKLEALSNSFISQI 282
Query: 133 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 192
+ G H +AL S G+ Y WG N GQ+G+G+ + P + F D V
Sbjct: 283 SGGWRHTMALTSDGK--------LYGWGWNKFGQVGVGNNLDQCSPVQVR-FPDDQK--V 331
Query: 193 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY 252
+V+CG HT +T R + +G G NGQLG G + + P+ +
Sbjct: 332 VQVSCGWRHTLAVTERNN--------VFAWGRGTNGQLGIGESVD-------RNFPKIIE 376
Query: 253 LVSVD 257
+SVD
Sbjct: 377 ALSVD 381
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 134/295 (45%), Gaps = 45/295 (15%)
Query: 72 IKICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHT 128
I+I + G LA+ G + WG N L TE S P + F G
Sbjct: 109 IRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTE------DSLVPQKIQAFEGIR 162
Query: 129 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 188
+ VA G+EH A+ ED Y WG G LGLGDR RL P+ + + +
Sbjct: 163 IKMVAAGAEHTAAVT--------EDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEK 214
Query: 189 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 248
+ V CG HT +++ +T+G + GQLGHG + L+P +++ L
Sbjct: 215 ---MSMVACGWRHTISVSY--------SGALYTYGWSKYGQLGHGDLEDHLIPHKLEALS 263
Query: 249 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGN 306
++ + G HT ++S G ++ WG K +G+ N D SP+ +
Sbjct: 264 NS-FISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNL--------DQCSPVQV--- 311
Query: 307 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 361
P Q VQV+CG HT+ VT+ +++WGRG +G LG G+++D P I+
Sbjct: 312 --RFPDDQKVVQVSCGWRHTLAVTERN-NVFAWGRGTNGQLGIGESVDRNFPKII 363
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 130/290 (44%), Gaps = 38/290 (13%)
Query: 71 PIKICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVV 130
P K+ + AG S+A+ + + WG + G +P+ + GH +V
Sbjct: 3 PRKVLIISAGASHSVALLSGDIVCSWGR---GEDGQLGHGDAEDRPSPTQLSALDGHQIV 59
Query: 131 KVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPW 190
V CG++H VA +G + YSWG + G+LG G+ P I+ +
Sbjct: 60 SVTCGADHTVAYSQSG-------MEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIR-- 110
Query: 191 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQY 250
+ ++ CG H +T +E ++G +NGQLG G T+ +LVP++++ +
Sbjct: 111 -IKQIACGDSHCLAVT--------MEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAF-EG 160
Query: 251 VYLVSVDCGLFHTSVVSSAGDV--WSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGP 308
+ + V G HT+ V+ GD+ W WG LGL + D + P ++ G
Sbjct: 161 IRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGL--------GDRTDRLVPERVTSTG- 211
Query: 309 HGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 358
G K VACG HT+ V+ G L+++G + G LG G D P
Sbjct: 212 -GEKMS---MVACGWRHTISVSYSG-ALYTYGWSKYGQLGHGDLEDHLIP 256
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 74/175 (42%), Gaps = 22/175 (12%)
Query: 73 KICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV 132
K+ V G ++++ +GAL+ +G G L P + + ++
Sbjct: 214 KMSMVACGWRHTISVSYSGALYTYG---WSKYGQLGHGDLEDHLIPHKLEALSNSFISQI 270
Query: 133 ACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAV 192
+ G H +AL S G+ Y WG N GQ+G+G+ + P + F D V
Sbjct: 271 SGGWRHTMALTSDGK--------LYGWGWNKFGQVGVGNNLDQCSPVQVR-FPDDQK--V 319
Query: 193 YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKEL 247
+V+CG HT +T R + +G G NGQLG G + P+ ++ L
Sbjct: 320 VQVSCGWRHTLAVTERNN--------VFAWGRGTNGQLGIGESVDRNFPKIIEAL 366
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 11/114 (9%)
Query: 74 ICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVA 133
I + G ++A+ + G L+ WG S P V VV+V+
Sbjct: 267 ISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCS---PVQVRFPDDQKVVQVS 323
Query: 134 CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 187
CG H +A+ E ++WG NGQLG+G+ R PKIIE + D
Sbjct: 324 CGWRHTLAVT--------ERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVD 369
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 132/296 (44%), Gaps = 45/296 (15%)
Query: 72 IKICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVK 131
IK +V +GG LA+ + G ++ WG + G + P + G VV
Sbjct: 107 IKKVAVNSGGKHCLALSSEGEVYSWGE---AEDGKLGHGNRSPCDRPRVIESLRGIEVVD 163
Query: 132 VACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWA 191
VA G H + +AG+ Y +WG G+LG D E +L+PK++E
Sbjct: 164 VAAGGAHSACVTAAGDLY--------TWGKGRYGRLGHSDSEDQLKPKLVEALQGHR--- 212
Query: 192 VYEVTCGS--FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQ 249
V ++ CGS T LT + W++G G+ G+LG G + VP ++ L
Sbjct: 213 VVDIACGSGDAQTLCLTD--------DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTG 264
Query: 250 YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKG----LGLCPNASLTRNEAGDAISPILISG 305
+ +V V+CG + ++ +G V++WG KG LG + + R P +
Sbjct: 265 -LGVVKVECGSQFSVALTKSGAVYTWG--KGDYHRLGHGSDDHVRR--------PRQV-- 311
Query: 306 NGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 361
G G K + +A G+ H V T+DG ++++WG G LG G T P +V
Sbjct: 312 QGLQGKKV---IAIATGSLHCVCCTEDG-EVYTWGDNDEGQLGDGTTNAIQRPRLV 363
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 112/261 (42%), Gaps = 42/261 (16%)
Query: 72 IKICSVKAGGMMSLAIDNAGALWMWGNCP---LPDSSTEGGFSLVSSFTPSPVWDFHGHT 128
I++ V AGG S + AG L+ WG L S +E P V GH
Sbjct: 159 IEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE------DQLKPKLVEALQGHR 212
Query: 129 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 188
VV +ACGS L +D +SWG + G+LG G + P I++ +
Sbjct: 213 VVDIACGSGDAQTLCLT------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL---T 263
Query: 189 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 248
V +V CGS + LT +T+G G+ +LGHG+ P QV+ L
Sbjct: 264 GLGVVKVECGSQFSVALTK--------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL- 314
Query: 249 QYVYLVSVDCGLFHTSVVSSAGDVWSWGM--EKGLGLCPNASLTRNEAGDAISPILISGN 306
Q ++++ G H + G+V++WG E LG ++ R P L++
Sbjct: 315 QGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--------PRLVAA- 365
Query: 307 GPHGPKFQDPVQVACGAAHTV 327
G K +VACG+AHT+
Sbjct: 366 -LQGKKVN---RVACGSAHTL 382
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 121/280 (43%), Gaps = 35/280 (12%)
Query: 81 GMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVV 140
G +L +G ++ WG+ GG P+P V++ G + +
Sbjct: 10 GRENLYFQGSGTIYGWGH---NHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLF 66
Query: 141 ALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSF 200
A+ + G+ Y+ G G+LG+G ES P ++E+ Q V G
Sbjct: 67 AVTADGKL--------YATGYGAGGRLGIGGTESVSTPTLLESI-QHVFIKKVAVNSGGK 117
Query: 201 HTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGL 260
H L+ E +++G E+G+LGHG P ++ L + + +V V G
Sbjct: 118 HCLALSS--------EGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL-RGIEVVDVAAGG 168
Query: 261 FHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVA 320
H++ V++AGD+++WG + L +++ D + P L+ H V +A
Sbjct: 169 AHSACVTAAGDLYTWGKGR------YGRLGHSDSEDQLKPKLVEALQGH-----RVVDIA 217
Query: 321 CGA--AHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAP 358
CG+ A T+ +TDD +WSWG G G LG G + P
Sbjct: 218 CGSGDAQTLCLTDDD-TVWSWGDGDYGKLGRGGSDGCKVP 256
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 62/151 (41%), Gaps = 14/151 (9%)
Query: 52 LTIGAPDSLEDDSKTNHKAPIKICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFS 111
L G D + K + + + V+ G S+A+ +GA++ WG D G S
Sbjct: 245 LGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGK---GDYHRLGHGS 301
Query: 112 LVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD 171
P V G V+ +A GS H V GE Y+WG N+ GQLG G
Sbjct: 302 DDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEV--------YTWGDNDEGQLGDGT 353
Query: 172 RESRLRPKIIETFNQDSPWAVYEVTCGSFHT 202
+ RP+++ V V CGS HT
Sbjct: 354 TNAIQRPRLVAALQGKK---VNRVACGSAHT 381
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 19/131 (14%)
Query: 235 TQSALVPEQVKELPQYVYL--VSVDCGLFHTSVVSSAGDVWSWG-MEKG-LGLCPNASLT 290
T+S P ++ + Q+V++ V+V+ G H +SS G+V+SWG E G LG +
Sbjct: 90 TESVSTPTLLESI-QHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCD 148
Query: 291 RNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 350
R +++ I + V VA G AH+ VT G L++WG+GR G LG
Sbjct: 149 RPRVIESLRGIEV-------------VDVAAGGAHSACVTAAG-DLYTWGKGRYGRLGHS 194
Query: 351 KTIDFFAPAIV 361
+ D P +V
Sbjct: 195 DSEDQLKPKLV 205
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 93/333 (27%), Positives = 140/333 (42%), Gaps = 48/333 (14%)
Query: 73 KICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPS--PVWDFHGHTVV 130
K+ V AG + A+ + G +++WG+ G L+ S PV VV
Sbjct: 112 KVVQVSAGDSHTAALTDDGRVFLWGSF----RDNNGVIGLLEPMKKSMVPVQVQLDVPVV 167
Query: 131 KVACGSEHVVALVSAGETYKGEDLVCYSWG---------ANNNGQLGLGDRESRLRPKII 181
KVA G++H+V L + G+ Y L C G AN G+ GL E L PK +
Sbjct: 168 KVASGNDHLVMLTADGDLYT---LGCGEQGQLGRVPELFANRGGRQGL---ERLLVPKCV 221
Query: 182 ETFNQDSPWAV--YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL 239
++ S V + CG++ T ++H E + FGL QLG T+S
Sbjct: 222 MLKSRGSRGHVRFQDAFCGAYFTFAISH--------EGHVYGFGLSNYHQLGTPGTESCF 273
Query: 240 VPEQVKELPQYVYL-VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAI 298
+P+ + V G HT + S G +S LG L E +
Sbjct: 274 IPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYS------LGRAEYGRLGLGEGAEEK 327
Query: 299 S-PILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFA 357
S P LIS + VACGA+ VT DG ++++WG G + LGTG+ D ++
Sbjct: 328 SIPTLIS-------RLPAVSSVACGASVGYAVTKDG-RVFAWGMGTNYQLGTGQDEDAWS 379
Query: 358 PAIVLWPPLTEEFKQDELNTGGLDDEIKTKDLE 390
P ++ L E +++GG + KD E
Sbjct: 380 PVEMMGKQL-ENRVVLSVSSGGQHTVLLVKDKE 411
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 20/147 (13%)
Query: 205 LTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTS 264
++HR + + T G G+ GQLG G + +P+ V V + G HT
Sbjct: 17 VSHRSHSTE--PGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDV--VQAEAGGMHTV 72
Query: 265 VVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDP-VQVACGA 323
+S +G V+S+G L + S+ +E ++ G + Q+ VQV+ G
Sbjct: 73 CLSKSGQVYSFGCNDEGALGRDTSVEGSE--------MVPGK----VELQEKVVQVSAGD 120
Query: 324 AHTVLVTDDGYKLWSWG--RGRSGVLG 348
+HT +TDDG +++ WG R +GV+G
Sbjct: 121 SHTAALTDDG-RVFLWGSFRDNNGVIG 146
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
Length = 402
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 93/333 (27%), Positives = 140/333 (42%), Gaps = 48/333 (14%)
Query: 73 KICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPS--PVWDFHGHTVV 130
K+ V AG + A+ + G +++WG+ G L+ S PV VV
Sbjct: 101 KVVQVSAGDSHTAALTDDGRVFLWGSF----RDNNGVIGLLEPMKKSMVPVQVQLDVPVV 156
Query: 131 KVACGSEHVVALVSAGETYKGEDLVCYSWG---------ANNNGQLGLGDRESRLRPKII 181
KVA G++H+V L + G+ Y L C G AN G+ GL E L PK +
Sbjct: 157 KVASGNDHLVMLTADGDLYT---LGCGEQGQLGRVPELFANRGGRQGL---ERLLVPKCV 210
Query: 182 ETFNQDSPWAV--YEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL 239
++ S V + CG++ T ++H E + FGL QLG T+S
Sbjct: 211 MLKSRGSRGHVRFQDAFCGAYFTFAISH--------EGHVYGFGLSNYHQLGTPGTESCF 262
Query: 240 VPEQVKELPQYVYL-VSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAI 298
+P+ + V G HT + S G +S LG L E +
Sbjct: 263 IPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYS------LGRAEYGRLGLGEGAEEK 316
Query: 299 S-PILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFA 357
S P LIS + VACGA+ VT DG ++++WG G + LGTG+ D ++
Sbjct: 317 SIPTLIS-------RLPAVSSVACGASVGYAVTKDG-RVFAWGMGTNYQLGTGQDEDAWS 368
Query: 358 PAIVLWPPLTEEFKQDELNTGGLDDEIKTKDLE 390
P ++ L E +++GG + KD E
Sbjct: 369 PVEMMGKQL-ENRVVLSVSSGGQHTVLLVKDKE 400
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 20/147 (13%)
Query: 205 LTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTS 264
++HR + + T G G+ GQLG G + +P+ V V + G HT
Sbjct: 6 VSHRSHSTE--PGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDV--VQAEAGGMHTV 61
Query: 265 VVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDP-VQVACGA 323
+S +G V+S+G L + S+ +E ++ G + Q+ VQV+ G
Sbjct: 62 CLSKSGQVYSFGCNDEGALGRDTSVEGSE--------MVPGK----VELQEKVVQVSAGD 109
Query: 324 AHTVLVTDDGYKLWSWG--RGRSGVLG 348
+HT +TDDG +++ WG R +GV+G
Sbjct: 110 SHTAALTDDG-RVFLWGSFRDNNGVIG 135
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 124/293 (42%), Gaps = 44/293 (15%)
Query: 73 KICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEG--GF---SLVSSFTPSPVWDFHGH 127
K+ + A MS A+ + G ++ WG EG GF + TP V F +
Sbjct: 149 KVVQLAATDNMSCALFSNGEVYAWGTF----RCNEGILGFYQDKIKIQKTPWKVPTFSKY 204
Query: 128 TVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQD 187
+V++A G +H++ L G + ++WG QLG E R R K ++
Sbjct: 205 NIVQLAPGKDHILFLDEEG--------MVFAWGNGQQNQLGRKVME-RFRLKTLDP---- 251
Query: 188 SPWAVYEV---TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLG--HGTTQSALVPE 242
P+ + V G H LT + N ++ ++GL + GQ G ALV +
Sbjct: 252 RPFGLRHVKYIASGENHCFALT---KDNKLV-----SWGLNQFGQCGVSEDVEDGALVTK 303
Query: 243 QVK-ELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG----MEKGLGLCPNASLTRNEAGDA 297
+ LP V + S+ G H+ ++S GD++S G E G+ T +
Sbjct: 304 PKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGK 363
Query: 298 ISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTG 350
+ + + PKF+ VA G+ H+V V +G +SWG G + +G G
Sbjct: 364 ARAVPLPTKLNNVPKFK---SVAAGSHHSVAVAQNGIA-YSWGFGETYAVGLG 412
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 67/181 (37%), Gaps = 27/181 (14%)
Query: 35 LGFSGSNSLVPCVIEQFLTIGAPDSLEDDSKTNHKAPIK------ICSVKAGGMMSLAID 88
+ N LV + QF G + +ED + + I S+ AG SL +
Sbjct: 270 FALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILS 329
Query: 89 NAGALWMWGNCPL------PDSSTEGGFSLV---SSFTPSPVWDFHGHTVVKVACGSEHV 139
G L+ G + D+ E + V + P P + VA GS H
Sbjct: 330 QDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAAGSHHS 389
Query: 140 VALVSAGETYKGEDLVCYSWGANNNGQLGLG--DRESRLRPKIIETFNQDSPWAVYEVTC 197
VA+ G + YSWG +GLG + ++ + +I T QD + V C
Sbjct: 390 VAVAQNG--------IAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDH--NIILVGC 439
Query: 198 G 198
G
Sbjct: 440 G 440
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 77/322 (23%), Positives = 121/322 (37%), Gaps = 55/322 (17%)
Query: 58 DSLEDDSKTNHKA---PIKICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVS 114
D+ ED S++ P K + AG S + G ++ WG+ DS G + +
Sbjct: 110 DTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGS--FRDSHGNMGLT-ID 166
Query: 115 SFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGL----- 169
+P+ G +A G++H+V L +AG+ + + G GQLG
Sbjct: 167 GNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVF--------TVGCAEQGQLGRLSERS 218
Query: 170 ----GDRESR--LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFG 223
G R R LRP + A++ +F T + W G
Sbjct: 219 ISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQ----------VIWATG 268
Query: 224 LGENGQLGHGTT--QSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 281
L QL H T + AL P + EL ++ G HT ++++ G +
Sbjct: 269 LNNFKQLAHETKGKEFALTPIKT-ELKDIRHIAG---GQHHTVILTTDLKCSVVGRPE-- 322
Query: 282 GLCPNASLTRNEAGDAI-SPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWG 340
L + D + P ++ + V V CG + VT DG KL+SWG
Sbjct: 323 ----YGRLGLGDVKDVVEKPTIVK------KLTEKIVSVGCGEVCSYAVTIDG-KLYSWG 371
Query: 341 RGRSGVLGTGKTIDFFAPAIVL 362
G + LG G D P +V+
Sbjct: 372 SGVNNQLGVGDGDDELEPIVVV 393
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 19/156 (12%)
Query: 199 SFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDC 258
+FH L R ++L +C G G+ GQLG G + L +++ + V +
Sbjct: 30 AFHLELPKRRTVLGNVL--VC---GNGDVGQLGLG--EDILERKRLSPVAGIPDAVDISA 82
Query: 259 GLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQ 318
G H V++ +GD++S+G L + S E G P LI G +
Sbjct: 83 GGMHNLVLTKSGDIYSFGCNDEGALGRDTS----EDGSESKPDLIDLPGK-------ALC 131
Query: 319 VACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTID 354
++ G +H+ + +DG ++++WG R G TID
Sbjct: 132 ISAGDSHSACLLEDG-RVFAWGSFRDSHGNMGLTID 166
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 129 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFN 185
+V V CG A+ G+ YSWG+ N QLG+GD + L P ++ + N
Sbjct: 348 IVSVGCGEVCSYAVTIDGK--------LYSWGSGVNNQLGVGDGDDELEPIVVVSKN 396
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 13 CFTCFFMPFICYTSLNCC---MDGQLG--FSGSNSLVPCVIEQFLTIGAPD---SLEDDS 64
C + + IC N C DG +G + GS L+P ++ + ++ APD ++ +D+
Sbjct: 189 CAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQRLTIHEDA 248
Query: 65 KTNHKAPI 72
T+ + PI
Sbjct: 249 STDKRMPI 256
>pdb|4AXO|A Chain A, Structure Of The Clostridium Difficile Eutq Protein
pdb|4AXO|B Chain B, Structure Of The Clostridium Difficile Eutq Protein
Length = 151
Score = 29.6 bits (65), Expect = 4.2, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 346 VLGTGKTIDF-----FAPAIVLWPPLTEEFKQDELNTGGLDDEIKTKDLEGAEERDEKLS 400
+ GT T+DF + + P + + D L+TG D + TKDL EE +L
Sbjct: 9 ISGTKDTVDFVRNKDISGITSIKLPTVKVSESDRLDTGNPSDVVYTKDLFTLEE-SPRLG 67
Query: 401 SAMEEMK 407
M EMK
Sbjct: 68 CGMMEMK 74
>pdb|3TJE|L Chain L, Crystal Structure Of Fas Receptor Extracellular Domain In
Complex With Fab E09
Length = 216
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Query: 331 DDGYKLWSWGRG-RSGVLGTGKTIDFFAPAIVLWPPLTEEFKQDE 374
DD K W +G G + VLG K AP++ L+PP +EE + ++
Sbjct: 93 DDTLKGWVFGGGTKVTVLGQPKA----APSVTLFPPSSEELQANK 133
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,244,674
Number of Sequences: 62578
Number of extensions: 723843
Number of successful extensions: 1757
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1561
Number of HSP's gapped (non-prelim): 56
length of query: 504
length of database: 14,973,337
effective HSP length: 103
effective length of query: 401
effective length of database: 8,527,803
effective search space: 3419649003
effective search space used: 3419649003
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)