Query 010683
Match_columns 504
No_of_seqs 383 out of 2257
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 03:22:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010683.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010683hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5184 ATS1 Alpha-tubulin sup 100.0 6.6E-40 1.4E-44 327.3 24.9 314 14-362 104-440 (476)
2 COG5184 ATS1 Alpha-tubulin sup 100.0 1.1E-38 2.3E-43 318.6 23.3 288 22-354 68-379 (476)
3 KOG1427 Uncharacterized conser 100.0 3E-35 6.4E-40 276.2 15.0 264 59-362 43-323 (443)
4 KOG1427 Uncharacterized conser 100.0 4E-33 8.8E-38 261.9 15.8 301 14-361 56-375 (443)
5 KOG0783 Uncharacterized conser 99.9 1.5E-23 3.3E-28 218.9 14.2 273 22-343 142-417 (1267)
6 KOG0783 Uncharacterized conser 99.9 1.7E-21 3.6E-26 203.7 10.8 220 85-341 136-361 (1267)
7 KOG1428 Inhibitor of type V ad 99.8 6.8E-19 1.5E-23 190.2 21.8 228 68-328 565-891 (3738)
8 KOG1428 Inhibitor of type V ad 99.8 2.2E-18 4.7E-23 186.4 18.9 298 8-371 473-876 (3738)
9 PF00415 RCC1: Regulator of ch 99.2 6.6E-11 1.4E-15 85.7 6.0 49 217-266 2-51 (51)
10 PF00415 RCC1: Regulator of ch 99.1 9E-11 2E-15 85.0 5.0 49 154-205 2-51 (51)
11 PF13540 RCC1_2: Regulator of 99.0 5.6E-10 1.2E-14 71.0 4.7 30 316-346 1-30 (30)
12 PF13540 RCC1_2: Regulator of 98.9 1.7E-09 3.6E-14 68.9 4.4 30 192-229 1-30 (30)
13 KOG0941 E3 ubiquitin protein l 98.9 2.8E-11 6.1E-16 129.2 -8.4 142 118-279 5-154 (850)
14 KOG0941 E3 ubiquitin protein l 98.8 2E-10 4.4E-15 122.7 -6.1 177 71-271 13-198 (850)
15 KOG3669 Uncharacterized conser 93.7 3.7 8E-05 43.7 16.6 104 79-210 190-295 (705)
16 KOG3669 Uncharacterized conser 92.2 1.4 3E-05 46.8 11.1 71 191-275 228-299 (705)
17 KOG0646 WD40 repeat protein [G 90.5 21 0.00047 37.1 17.2 97 16-138 86-186 (476)
18 PF11725 AvrE: Pathogenicity f 89.3 2.8 6.1E-05 50.0 11.1 113 123-270 699-815 (1774)
19 KOG0315 G-protein beta subunit 81.5 21 0.00044 34.5 10.8 75 4-98 118-196 (311)
20 KOG0943 Predicted ubiquitin-pr 76.0 0.31 6.7E-06 55.4 -3.3 128 125-277 372-504 (3015)
21 KOG0943 Predicted ubiquitin-pr 73.0 0.42 9.1E-06 54.4 -3.3 136 69-229 371-509 (3015)
22 KOG1274 WD40 repeat protein [G 71.6 87 0.0019 35.6 13.8 75 79-164 13-88 (933)
23 PF07569 Hira: TUP1-like enhan 68.0 24 0.00052 33.6 7.9 30 71-100 12-41 (219)
24 PF12341 DUF3639: Protein of u 67.2 11 0.00023 23.2 3.4 23 126-148 1-23 (27)
25 TIGR01063 gyrA DNA gyrase, A s 66.8 2.4E+02 0.0053 32.4 17.9 164 78-275 543-715 (800)
26 smart00706 TECPR Beta propelle 61.8 19 0.00041 23.1 4.2 25 72-96 8-33 (35)
27 smart00706 TECPR Beta propelle 53.5 27 0.00059 22.3 3.8 24 252-275 9-33 (35)
28 KOG1240 Protein kinase contain 53.1 3.4E+02 0.0073 32.5 14.4 68 73-148 1050-1122(1431)
29 PF07569 Hira: TUP1-like enhan 51.0 77 0.0017 30.1 8.1 28 191-226 14-41 (219)
30 KOG1408 WD40 repeat protein [F 49.9 3.9E+02 0.0084 30.1 13.6 24 251-274 218-245 (1080)
31 PF05924 SAMP: SAMP Motif; In 49.5 11 0.00023 21.3 1.1 12 491-502 4-15 (20)
32 KOG1900 Nuclear pore complex, 47.6 3.8E+02 0.0081 32.2 13.9 225 87-341 95-339 (1311)
33 PF12341 DUF3639: Protein of u 42.8 62 0.0013 19.9 3.8 25 251-275 2-26 (27)
34 KOG4441 Proteins containing BT 40.9 5.2E+02 0.011 28.4 13.6 23 318-341 508-530 (571)
35 PRK05560 DNA gyrase subunit A; 39.0 6.6E+02 0.014 29.0 17.3 170 72-275 537-718 (805)
36 PF10168 Nup88: Nuclear pore c 38.0 3.8E+02 0.0082 30.4 12.1 79 127-210 85-172 (717)
37 PF06739 SBBP: Beta-propeller 37.6 35 0.00076 22.6 2.5 19 261-279 15-33 (38)
38 PF11725 AvrE: Pathogenicity f 37.5 56 0.0012 39.8 5.6 103 21-146 711-815 (1774)
39 KOG2055 WD40 repeat protein [G 37.4 1.8E+02 0.0039 30.6 8.6 83 17-126 350-433 (514)
40 KOG0315 G-protein beta subunit 37.2 4.1E+02 0.0088 26.0 21.9 28 191-226 169-198 (311)
41 PF04762 IKI3: IKI3 family; I 34.2 8.3E+02 0.018 28.7 19.7 30 70-99 425-456 (928)
42 PLN02153 epithiospecifier prot 33.0 5.2E+02 0.011 25.9 15.5 18 82-100 130-147 (341)
43 PF06648 DUF1160: Protein of u 32.8 54 0.0012 28.1 3.4 36 456-498 58-95 (122)
44 COG4257 Vgb Streptogramin lyas 31.8 4.6E+02 0.0099 26.1 9.8 141 79-276 61-206 (353)
45 KOG0282 mRNA splicing factor [ 31.1 1.1E+02 0.0023 32.4 5.8 37 3-40 335-371 (503)
46 COG4257 Vgb Streptogramin lyas 30.6 3.7E+02 0.0081 26.7 9.0 104 20-161 60-166 (353)
47 KOG0649 WD40 repeat protein [G 28.9 5.5E+02 0.012 25.0 11.5 50 125-183 61-111 (325)
48 PHA03098 kelch-like protein; P 27.7 7.9E+02 0.017 26.4 12.7 17 82-99 335-351 (534)
49 PF07340 Herpes_IE1: Cytomegal 25.5 49 0.0011 33.7 2.2 17 483-499 338-354 (392)
50 PF13418 Kelch_4: Galactose ox 24.6 65 0.0014 22.0 2.2 19 260-278 3-21 (49)
51 KOG1274 WD40 repeat protein [G 24.6 1.1E+03 0.025 27.2 14.2 76 3-98 6-85 (933)
52 PF01436 NHL: NHL repeat; Int 24.3 1.1E+02 0.0024 18.5 2.9 19 83-101 5-23 (28)
53 PRK14131 N-acetylneuraminic ac 23.8 7.9E+02 0.017 25.1 15.6 14 265-278 275-288 (376)
54 KOG4693 Uncharacterized conser 23.7 1.6E+02 0.0034 28.9 5.2 25 260-285 80-105 (392)
55 KOG0307 Vesicle coat complex C 20.4 1.6E+02 0.0036 34.3 5.3 32 316-348 256-290 (1049)
No 1
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=6.6e-40 Score=327.29 Aligned_cols=314 Identities=24% Similarity=0.377 Sum_probs=231.3
Q ss_pred eeEEEecccceeeEEEcCCCceecCC---CCcccceeeehhhccCCCCCC-----CCccccCCCC------CCCEEEEEe
Q 010683 14 FTCFFMPFICYTSLNCCMDGQLGFSG---SNSLVPCVIEQFLTIGAPDSL-----EDDSKTNHKA------PIKICSVKA 79 (504)
Q Consensus 14 ~~i~~ia~G~~h~~~l~~~GqlG~~~---~~~~~p~~i~~~~~l~~~~~~-----~~~~~~~~~~------~~~I~~Va~ 79 (504)
+.++.+++|+.|+++++.||+|+.|+ .+.++|.......+...+... ..-+|.+.+. +.+|++++|
T Consensus 104 ~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~c 183 (476)
T COG5184 104 ASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLAC 183 (476)
T ss_pred eeeEEeecCCceEEeecCCCCEEEeccCcccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeec
Confidence 77999999999999999999996664 556666552111111100000 1112233322 568999999
Q ss_pred cCceeEEEecCCcEEEecCCCCCCCCCCCCCccccc----ccceeecCCCCCeEEEEEecCCeEEEEEcCCCeeecCCcc
Q 010683 80 GGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLV 155 (504)
Q Consensus 80 G~~hs~alt~~G~v~~wG~n~~gGqlg~g~~~~~~~----~~p~~v~~l~~~~I~~Va~G~~hs~alt~~G~vy~~~~~~ 155 (504)
|++++++|+++|+||.||.... +-++.+....... ++|..+. ...|+++++|.+|.++|+++| +
T Consensus 184 g~e~svil~~~G~V~~~gt~r~-~e~~~g~~~~s~k~~~~~~p~~v~---~~~i~qla~G~dh~i~lt~~G--------~ 251 (476)
T COG5184 184 GWEISVILTADGRVYSWGTFRC-GELGQGSYKNSQKTSIQFTPLKVP---KKAIVQLAAGADHLIALTNEG--------K 251 (476)
T ss_pred CCceEEEEccCCcEEEecCccc-cccccccccccccceeeeeeeecC---chheeeeccCCceEEEEecCC--------c
Confidence 9999999999999999999877 5666664333332 4454444 357999999999999999999 6
Q ss_pred EEEecCCCCCCCCCCCCCCcccceEEeecCCCCCCcEEEEeecCceEEEEecCCCCCCCCCCeEEEEecCCCCCCCCCCC
Q 010683 156 CYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT 235 (504)
Q Consensus 156 ly~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~~~~I~~Ia~G~~ht~~Lt~~G~~~~~~~~~vy~wG~n~~GQLG~g~~ 235 (504)
||+||+|..||||....+....+..+..+-... .|+.|+||.+|+++|+++|+ +|+||.|.+||||.+..
T Consensus 252 vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~--~i~~vacG~~h~~al~~~G~--------i~a~G~n~fgqlg~~~~ 321 (476)
T COG5184 252 VYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIR--NIKYVACGKDHSLALDEDGE--------IYAWGVNIFGQLGAGSD 321 (476)
T ss_pred EEEecCCcccccCCchhhhcccccccCChhhhh--hhhhcccCcceEEEEcCCCe--------EEEeccchhcccccCcc
Confidence 799999999999999888876666665433221 47889999999999999999 99999999999999822
Q ss_pred C----ceecceEeeecCCceEEEEEEecCCeeEEEecCCcEEEEeCCCCCCCCCCCCCCCCCCCCceeeEEeeCCCCCCC
Q 010683 236 Q----SALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP 311 (504)
Q Consensus 236 ~----~~~~p~~v~~l~~~~~i~~Ia~G~~hs~~lt~~G~vy~wG~n~~lG~~~~~~~~~~~~~~~~~P~~i~~~~~~~~ 311 (504)
. ....|.... +.....|.+|++|..|+++|..+|.||+||++...+++.... ...+...|..+..
T Consensus 322 ~~~~a~~tk~~~~~-~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~----~~~~~~~~~~ls~------ 390 (476)
T COG5184 322 GEIGALTTKPNYKQ-LLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEE----ITIDVSTPTKLSV------ 390 (476)
T ss_pred cccceeeccccccc-cCCCceEEEEecCcceEEEEecCceEEEecCCccccccCccc----ceeecCCcccccc------
Confidence 1 112333332 335567999999999999999999999999987333322110 0223334444432
Q ss_pred CCCCcEEEEecCceeEEEEcCCCeEEEEeCCCCCCCCCCCCCC-eecceEee
Q 010683 312 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTID-FFAPAIVL 362 (504)
Q Consensus 312 ~~~~I~~I~~G~~ht~~lt~~G~~vy~WG~n~~GqLG~g~~~~-~~~P~~v~ 362 (504)
..++.+++||..|+++.+.+| .||+||+|++||||+|...+ +..|+.+.
T Consensus 391 -~~~~~~v~~gt~~~~~~t~~g-svy~wG~ge~gnlG~g~~~~~~~~pt~i~ 440 (476)
T COG5184 391 -AIKLEQVACGTHHNIARTDDG-SVYSWGWGEHGNLGNGPKEADVLVPTLIR 440 (476)
T ss_pred -ccceEEEEecCccceeeccCC-ceEEecCchhhhccCCchhhhcccccccc
Confidence 345889999999999999999 99999999999999998654 66666664
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=1.1e-38 Score=318.64 Aligned_cols=288 Identities=24% Similarity=0.365 Sum_probs=218.2
Q ss_pred cceeeEEEcCCCceecCCCCc--ccceeeehhhccCCCCCCCCccccCCCCCCCEEEEEecCceeEEEecCCcEEEecCC
Q 010683 22 ICYTSLNCCMDGQLGFSGSNS--LVPCVIEQFLTIGAPDSLEDDSKTNHKAPIKICSVKAGGMMSLAIDNAGALWMWGNC 99 (504)
Q Consensus 22 G~~h~~~l~~~GqlG~~~~~~--~~p~~i~~~~~l~~~~~~~~~~~~~~~~~~~I~~Va~G~~hs~alt~~G~v~~wG~n 99 (504)
+..++||.+..++||++.+.. ..|+....+ .+ ....|++++||++|+++|+.||.||+||.|
T Consensus 68 ~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~-~~---------------d~~~i~~~acGg~hsl~ld~Dg~lyswG~N 131 (476)
T COG5184 68 ASVYSWGSNGMNELGLGNDETKVDRPQLNPFG-RI---------------DKASIIKIACGGNHSLGLDHDGNLYSWGDN 131 (476)
T ss_pred eeeEEEecCcceeeccCCchhcccCceecCcc-cc---------------cceeeEEeecCCceEEeecCCCCEEEeccC
Confidence 557889999999999886432 334443321 11 247899999999999999999999999999
Q ss_pred CCCCCCCCCCC--------------cccccccceeecC----CCCCeEEEEEecCCeEEEEEcCCCeeecCCccEEEecC
Q 010683 100 PLPDSSTEGGF--------------SLVSSFTPSPVWD----FHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGA 161 (504)
Q Consensus 100 ~~gGqlg~g~~--------------~~~~~~~p~~v~~----l~~~~I~~Va~G~~hs~alt~~G~vy~~~~~~ly~wG~ 161 (504)
.. |+||.... ......+|..|.. ....+|++++||++++++|+++| .||+||.
T Consensus 132 ~~-G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G--------~V~~~gt 202 (476)
T COG5184 132 DD-GALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADG--------RVYSWGT 202 (476)
T ss_pred cc-cccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCC--------cEEEecC
Confidence 99 89887662 2233556767665 22347999999999999999999 5799999
Q ss_pred CCCCCCCCCCCCCccc----ceEEeecCCCCCCcEEEEeecCceEEEEecCCCCCCCCCCeEEEEecCCCCCCCCCCCCc
Q 010683 162 NNNGQLGLGDRESRLR----PKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS 237 (504)
Q Consensus 162 n~~GqLG~g~~~~~~~----p~~v~~l~~~~~~~I~~Ia~G~~ht~~Lt~~G~~~~~~~~~vy~wG~n~~GQLG~g~~~~ 237 (504)
...+.++.+...+... ++.+.... ..|+++++|.+|.++|+++|+ ||+||+|.+||||......
T Consensus 203 ~r~~e~~~g~~~~s~k~~~~~~p~~v~~----~~i~qla~G~dh~i~lt~~G~--------vy~~Gs~qkgqlG~~~~e~ 270 (476)
T COG5184 203 FRCGELGQGSYKNSQKTSIQFTPLKVPK----KAIVQLAAGADHLIALTNEGK--------VYGWGSNQKGQLGRPTSER 270 (476)
T ss_pred ccccccccccccccccceeeeeeeecCc----hheeeeccCCceEEEEecCCc--------EEEecCCcccccCCchhhh
Confidence 9999998885443322 33332221 269999999999999999999 9999999999999988877
Q ss_pred eecceEeeecCCceEEEEEEecCCeeEEEecCCcEEEEeCCCCCCCCCCCCCCCCCCCCceeeEEeeCCCCCCCCCCCcE
Q 010683 238 ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPV 317 (504)
Q Consensus 238 ~~~p~~v~~l~~~~~i~~Ia~G~~hs~~lt~~G~vy~wG~n~~lG~~~~~~~~~~~~~~~~~P~~i~~~~~~~~~~~~I~ 317 (504)
...+..+..+-.-..|+.|+||.+|++||+++|++|+||.|. +|+++.. ..+........|..... .....|.
T Consensus 271 ~~~~~lv~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~-fgqlg~~-~~~~~~a~~tk~~~~~~-----~~~~~i~ 343 (476)
T COG5184 271 LKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNI-FGQLGAG-SDGEIGALTTKPNYKQL-----LSGVTIC 343 (476)
T ss_pred cccccccCChhhhhhhhhcccCcceEEEEcCCCeEEEeccch-hcccccC-cccccceeecccccccc-----CCCceEE
Confidence 666666643323345789999999999999999999999997 5655544 11222222333433322 1222378
Q ss_pred EEEecCceeEEEEcCCCeEEEEeCCCCCCCCCCCCCC
Q 010683 318 QVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTID 354 (504)
Q Consensus 318 ~I~~G~~ht~~lt~~G~~vy~WG~n~~GqLG~g~~~~ 354 (504)
+|++|..|+++|..+| .||+||++..+|||..+...
T Consensus 344 ~is~ge~H~l~L~~~G-~l~a~Gr~~~~qlg~~~~~~ 379 (476)
T COG5184 344 SISAGESHSLILRKDG-TLYAFGRGDRGQLGIQEEIT 379 (476)
T ss_pred EEecCcceEEEEecCc-eEEEecCCccccccCcccce
Confidence 9999999999999999 99999999999999999543
No 3
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=3e-35 Score=276.21 Aligned_cols=264 Identities=28% Similarity=0.482 Sum_probs=211.5
Q ss_pred CCCCccccCCCCCCCEEEEEec--CceeEEEecCCcEEEecCCCCCCCCCCCCCcccccccceeecCCCCCeEEEEEecC
Q 010683 59 SLEDDSKTNHKAPIKICSVKAG--GMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGS 136 (504)
Q Consensus 59 ~~~~~~~~~~~~~~~I~~Va~G--~~hs~alt~~G~v~~wG~n~~gGqlg~g~~~~~~~~~p~~v~~l~~~~I~~Va~G~ 136 (504)
.+.+|.+...+.+++|.-|++| ..|+++|+-+|+.|+||.|.. ||||.+ +......|..|..|...+|++.|||+
T Consensus 43 NL~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNek-GQLGhg--D~k~~e~Ptvi~gL~~~~iv~AA~Gr 119 (443)
T KOG1427|consen 43 NLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEK-GQLGHG--DMKQRERPTVISGLSKHKIVKAAAGR 119 (443)
T ss_pred ccccceeccccccceEEEEecccchhhEEEEecccceeecccCcc-CccCcc--chhhccCCchhhhhhhhhHHHHhhcc
Confidence 4555666666678889999988 679999999999999999999 899999 45667788899999999999999999
Q ss_pred CeEEEEEcCCCeeecCCccEEEecCCCCCCCCCCCCCCcc-cceEEeecCCCCCCcEEEEeecCceEEEEecCCCCCCCC
Q 010683 137 EHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRL-RPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDML 215 (504)
Q Consensus 137 ~hs~alt~~G~vy~~~~~~ly~wG~n~~GqLG~g~~~~~~-~p~~v~~l~~~~~~~I~~Ia~G~~ht~~Lt~~G~~~~~~ 215 (504)
+|+++||++| .+|+||.|.+||||+++..... .|..+... .+ .|+.|+||.++++.|+..+.
T Consensus 120 nHTl~ltdtG--------~v~afGeNK~GQlGlgn~~~~v~s~~~~~~~-~~---~v~~v~cga~ftv~l~~~~s----- 182 (443)
T KOG1427|consen 120 NHTLVLTDTG--------QVLAFGENKYGQLGLGNAKNEVESTPLPCVV-SD---EVTNVACGADFTVWLSSTES----- 182 (443)
T ss_pred CcEEEEecCC--------cEEEecccccccccccccccccccCCCcccc-Cc---cceeeccccceEEEeecccc-----
Confidence 9999999999 4699999999999999876533 33333222 22 79999999999999999998
Q ss_pred CCeEEEEecCCCCCCCCCCCCc--------------eecceEeeecCCceEEEEEEecCCeeEEEecCCcEEEEeCCCCC
Q 010683 216 ESMCWTFGLGENGQLGHGTTQS--------------ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGL 281 (504)
Q Consensus 216 ~~~vy~wG~n~~GQLG~g~~~~--------------~~~p~~v~~l~~~~~i~~Ia~G~~hs~~lt~~G~vy~wG~n~~l 281 (504)
+.++|.-.|||||+++... +..|..|..+ +...|++++||.+||++++++++||+||-+. |
T Consensus 183 ---i~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~-dgvqiv~~acg~nhtvavd~nkrVysWGFGG-y 257 (443)
T KOG1427|consen 183 ---ILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASL-DGVQIVKVACGTNHTVAVDKNKRVYSWGFGG-Y 257 (443)
T ss_pred ---eeecCCccccccccCcchhhccccccceeeeecCCCccccccc-cceeeEEEeccCcceeeecCCccEEEecccc-c
Confidence 9999999999999986432 2234455555 5678999999999999999999999999886 5
Q ss_pred CCCCCCCCCCCCCCCceeeEEeeCCCCCCCCCCCcEEEEecCceeEEEEcCCCeEEEEeCCCCCCCCCCCCCCeecceEe
Q 010683 282 GLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 361 (504)
Q Consensus 282 G~~~~~~~~~~~~~~~~~P~~i~~~~~~~~~~~~I~~I~~G~~ht~~lt~~G~~vy~WG~n~~GqLG~g~~~~~~~P~~v 361 (504)
|..+.. +..+...|++|..+...+. -..++.||+..++++..-| .+|.||.+.. ...+...|.++
T Consensus 258 GRLGHa-----EqKDEmvpRlik~Fd~~~r---g~~~~~~g~t~Sl~v~e~G-~Lf~~g~~k~------~ge~~mypkP~ 322 (443)
T KOG1427|consen 258 GRLGHA-----EQKDEMVPRLIKVFDRNNR---GPPNAILGYTGSLNVAEGG-QLFMWGKIKN------NGEDWMYPKPM 322 (443)
T ss_pred cccccc-----cchhhHHHHHHHHhcCCCC---CCcceeeecccceeecccc-eeEEeecccc------CcccccCCCch
Confidence 554432 3446778888876544332 2458999999999999999 9999999863 23356666665
Q ss_pred e
Q 010683 362 L 362 (504)
Q Consensus 362 ~ 362 (504)
.
T Consensus 323 ~ 323 (443)
T KOG1427|consen 323 M 323 (443)
T ss_pred h
Confidence 4
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=4e-33 Score=261.87 Aligned_cols=301 Identities=25% Similarity=0.338 Sum_probs=226.8
Q ss_pred eeEEEecccc--eeeEEEcCCCceecCCCCcccceeeehhhccCCCCCCCCccccCCCCCCCEEEEEecCceeEEEecCC
Q 010683 14 FTCFFMPFIC--YTSLNCCMDGQLGFSGSNSLVPCVIEQFLTIGAPDSLEDDSKTNHKAPIKICSVKAGGMMSLAIDNAG 91 (504)
Q Consensus 14 ~~i~~ia~G~--~h~~~l~~~GqlG~~~~~~~~p~~i~~~~~l~~~~~~~~~~~~~~~~~~~I~~Va~G~~hs~alt~~G 91 (504)
++|.++++|. .|++.++-+|+++.|+.+-.+ .++++..-.-..|+.++-++..+|++.|||.+|+++|+++|
T Consensus 56 v~iR~VasG~~aaH~vli~megk~~~wGRNekG------QLGhgD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG 129 (443)
T KOG1427|consen 56 VNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKG------QLGHGDMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTG 129 (443)
T ss_pred ceEEEEecccchhhEEEEecccceeecccCccC------ccCccchhhccCCchhhhhhhhhHHHHhhccCcEEEEecCC
Confidence 4466666664 588888888888666544321 11111111223456666677889999999999999999999
Q ss_pred cEEEecCCCCCCCCCCCCCcccccccceeecCCCCCeEEEEEecCCeEEEEEcCCCeeecCCccEEEecCCCCCCCCCCC
Q 010683 92 ALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD 171 (504)
Q Consensus 92 ~v~~wG~n~~gGqlg~g~~~~~~~~~p~~v~~l~~~~I~~Va~G~~hs~alt~~G~vy~~~~~~ly~wG~n~~GqLG~g~ 171 (504)
.||.||.|.+ ||||.++........|.+. ..+..|..|+||.++++.|+..+ .+.++|.-.|||||++.
T Consensus 130 ~v~afGeNK~-GQlGlgn~~~~v~s~~~~~--~~~~~v~~v~cga~ftv~l~~~~--------si~t~glp~ygqlgh~t 198 (443)
T KOG1427|consen 130 QVLAFGENKY-GQLGLGNAKNEVESTPLPC--VVSDEVTNVACGADFTVWLSSTE--------SILTAGLPQYGQLGHGT 198 (443)
T ss_pred cEEEeccccc-ccccccccccccccCCCcc--ccCccceeeccccceEEEeeccc--------ceeecCCccccccccCc
Confidence 9999999999 8999998544333222222 23457999999999999999998 67999999999999986
Q ss_pred CCC--------------cccceEEeecCCCCCCcEEEEeecCceEEEEecCCCCCCCCCCeEEEEecCCCCCCCCCCCCc
Q 010683 172 RES--------------RLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS 237 (504)
Q Consensus 172 ~~~--------------~~~p~~v~~l~~~~~~~I~~Ia~G~~ht~~Lt~~G~~~~~~~~~vy~wG~n~~GQLG~g~~~~ 237 (504)
... ...|..|..++.. .|++++||.+||++++++++ ||+||.+-||+||+....+
T Consensus 199 d~~~~~~~~~~~~~~e~~pr~~~i~~~dgv---qiv~~acg~nhtvavd~nkr--------VysWGFGGyGRLGHaEqKD 267 (443)
T KOG1427|consen 199 DNEFNMKDSSVRLAYEAQPRPKAIASLDGV---QIVKVACGTNHTVAVDKNKR--------VYSWGFGGYGRLGHAEQKD 267 (443)
T ss_pred chhhccccccceeeeecCCCccccccccce---eeEEEeccCcceeeecCCcc--------EEEeccccccccccccchh
Confidence 432 2446666666654 79999999999999999999 9999999999999999999
Q ss_pred eecceEeeecCC-ceEEEEEEecCCeeEEEecCCcEEEEeCCCCCCCCCCCCCCCCCCCCceeeEEeeCCCCCCCCCCCc
Q 010683 238 ALVPEQVKELPQ-YVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDP 316 (504)
Q Consensus 238 ~~~p~~v~~l~~-~~~i~~Ia~G~~hs~~lt~~G~vy~wG~n~~lG~~~~~~~~~~~~~~~~~P~~i~~~~~~~~~~~~I 316 (504)
...|+.++.|.. +.--.++.||+..++++.+-|.+|.||.+..-| .+...|..+.. ....++
T Consensus 268 EmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~~g------------e~~mypkP~~d-----lsgwnl 330 (443)
T KOG1427|consen 268 EMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKNNG------------EDWMYPKPMMD-----LSGWNL 330 (443)
T ss_pred hHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEeeccccCc------------ccccCCCchhh-----cCCccC
Confidence 999999887652 233567899999999999999999999886322 13344444444 234557
Q ss_pred EEEEecCceeEEEEcCCCeEEEEeCCCCCCCC-CCCC-CCeecceEe
Q 010683 317 VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG-TGKT-IDFFAPAIV 361 (504)
Q Consensus 317 ~~I~~G~~ht~~lt~~G~~vy~WG~n~~GqLG-~g~~-~~~~~P~~v 361 (504)
..+.|+..|.++-.++ .+.+||...+|.++ .+.. .....|..|
T Consensus 331 ~~~~~~~~h~~v~ad~--s~i~wg~~~~g~~lggp~~Qkss~~Pk~v 375 (443)
T KOG1427|consen 331 RWMDSGSMHHFVGADS--SCISWGHAQYGELLGGPNGQKSSAAPKKV 375 (443)
T ss_pred CCcCccceeeeecccc--cccccccccccccccCccccccccCcccc
Confidence 7999999998877665 69999998887664 4443 346677665
No 5
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.90 E-value=1.5e-23 Score=218.89 Aligned_cols=273 Identities=19% Similarity=0.299 Sum_probs=211.3
Q ss_pred cceeeEEEcCCCceecCC-CCcccceeeehhhccCCCCCCCCccccCCCCCCCEEEEEecCceeEEEecCCcEEEecCCC
Q 010683 22 ICYTSLNCCMDGQLGFSG-SNSLVPCVIEQFLTIGAPDSLEDDSKTNHKAPIKICSVKAGGMMSLAIDNAGALWMWGNCP 100 (504)
Q Consensus 22 G~~h~~~l~~~GqlG~~~-~~~~~p~~i~~~~~l~~~~~~~~~~~~~~~~~~~I~~Va~G~~hs~alt~~G~v~~wG~n~ 100 (504)
..+++||.|.+..||.+. .....|..+..|.. .+.-+.+|+.+..|++++++.|.||+||-+.
T Consensus 142 ndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~----------------Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~ 205 (1267)
T KOG0783|consen 142 NDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKT----------------SGQLFSQVQLSKFHSVFLTEKGQVYVCGHGA 205 (1267)
T ss_pred cceeEecccccccccccCCCCCCChHHhHHHHh----------------ccHHHHHHHHhhceeeEecCCCcEEEeccCC
Confidence 678999999999999886 45667777776542 3456788999999999999999999999998
Q ss_pred CCCCCCCCCCcccccccceeecCCCCCeEEEEEecCCeEEEEEcCCCeeecCCccEEEecCCCCCCCCCCCCCC-cccce
Q 010683 101 LPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRES-RLRPK 179 (504)
Q Consensus 101 ~gGqlg~g~~~~~~~~~p~~v~~l~~~~I~~Va~G~~hs~alt~~G~vy~~~~~~ly~wG~n~~GqLG~g~~~~-~~~p~ 179 (504)
. |.+|.|. ....+.|.+|+.+.+.+|.+|++...|+++||.+| .||+||.|..+|||+.+... ...|.
T Consensus 206 G-GRlG~gd--eq~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g--------~Vys~GlN~~hqLG~~~~~~~~~~p~ 274 (1267)
T KOG0783|consen 206 G-GRLGFGD--EQYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFG--------SVYSWGLNGSHQLGLSNDELKKDDPI 274 (1267)
T ss_pred C-CccCcCc--ccccccccccccccccceEEEEeecceeEEEeecc--------eEEEeecCcccccCCcCchhhcCchh
Confidence 7 8999984 45677888999999999999999999999999999 67999999999999976553 34555
Q ss_pred EEeecCCCCCCcEEEEeecCceEEEEecCCCCCCCCCCeEEEEecCCCCCCCCCCC-CceecceEeeecCCceEEEEEEe
Q 010683 180 IIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT-QSALVPEQVKELPQYVYLVSVDC 258 (504)
Q Consensus 180 ~v~~l~~~~~~~I~~Ia~G~~ht~~Lt~~G~~~~~~~~~vy~wG~n~~GQLG~g~~-~~~~~p~~v~~l~~~~~i~~Ia~ 258 (504)
.|.......-..|+.|++|..|+++.|+.- ||+||.| .||||..+. ..+.+|+.+.. ....|.-|+|
T Consensus 275 qI~a~r~kg~~~iIgvaAg~~hsVawt~~~---------VY~wGlN-~GQlGi~~n~~~Vt~Pr~l~~--~~~~v~~v~a 342 (1267)
T KOG0783|consen 275 QITARRIKGFKQIIGVAAGKSHSVAWTDTD---------VYSWGLN-NGQLGISDNISVVTTPRRLAG--LLSPVIHVVA 342 (1267)
T ss_pred hhhhHhhcchhhhhhhhcccceeeeeecce---------EEEeccc-CceecCCCCCceeecchhhcc--cccceEEEEe
Confidence 555433332226899999999999999764 9999998 599998765 45678877744 3457999999
Q ss_pred cCCeeEEEecCCcEEEEeCCCCCCCCCCCCCCCCCCCCceeeEEeeCCCCCCCCCCCcEEEEecCceeEEEEcCCCeEEE
Q 010683 259 GLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWS 338 (504)
Q Consensus 259 G~~hs~~lt~~G~vy~wG~n~~lG~~~~~~~~~~~~~~~~~P~~i~~~~~~~~~~~~I~~I~~G~~ht~~lt~~G~~vy~ 338 (504)
...-|++++.+|.+|++-+-.+.-+..+. +..+.+.|.+-...... .++.+..+...--++++.-| +||.
T Consensus 343 ~~~ATVc~~~~~~i~~~ady~~~k~~~n~--------~~lks~~V~gg~l~~~~-~~~~k~~a~~~kll~lte~g-~Vy~ 412 (1267)
T KOG0783|consen 343 TTRATVCLLQNNSIIAFADYNQVKLPFNV--------DFLKSLKVTGGPLSLTR-FNVRKLLASENKLLVLTELG-EVYE 412 (1267)
T ss_pred cCccEEEEecCCcEEEEecccceecCcch--------hccceeEEecCccchhh-hhhhhcchhhhheeeeccCC-eEEE
Confidence 99999999999999998875544443221 23344445442222111 23456666666778899999 9999
Q ss_pred EeCCC
Q 010683 339 WGRGR 343 (504)
Q Consensus 339 WG~n~ 343 (504)
|-.+.
T Consensus 413 w~s~n 417 (1267)
T KOG0783|consen 413 WDSKN 417 (1267)
T ss_pred EecCC
Confidence 99764
No 6
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.85 E-value=1.7e-21 Score=203.75 Aligned_cols=220 Identities=22% Similarity=0.384 Sum_probs=174.6
Q ss_pred EEEecCCcEEEecCCCCCCCCCCCCCcccccccceeecCC--CCCeEEEEEecCCeEEEEEcCCCeeecCCccEEEecCC
Q 010683 85 LAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDF--HGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGAN 162 (504)
Q Consensus 85 ~alt~~G~v~~wG~n~~gGqlg~g~~~~~~~~~p~~v~~l--~~~~I~~Va~G~~hs~alt~~G~vy~~~~~~ly~wG~n 162 (504)
.++|.-.+||+||+|.. --||.|+... ...|..|..+ .|.=+.+|+.+..|++++++.|+ ||++|-.
T Consensus 136 ~~~d~pndvy~wG~N~N-~tLGign~~~--~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgq--------vY~cGhG 204 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTNVN-NTLGIGNGKE--PSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQ--------VYVCGHG 204 (1267)
T ss_pred cccCCccceeEeccccc-ccccccCCCC--CCChHHhHHHHhccHHHHHHHHhhceeeEecCCCc--------EEEeccC
Confidence 45566689999999998 6788886543 4455566554 45558889999999999999995 6999999
Q ss_pred CCCCCCCCCCCCcccceEEeecCCCCCCcEEEEeecCceEEEEecCCCCCCCCCCeEEEEecCCCCCCCCCCCC-ceecc
Q 010683 163 NNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQ-SALVP 241 (504)
Q Consensus 163 ~~GqLG~g~~~~~~~p~~v~~l~~~~~~~I~~Ia~G~~ht~~Lt~~G~~~~~~~~~vy~wG~n~~GQLG~g~~~-~~~~p 241 (504)
.-|.||.|+......|++|+.+... +|.+|+....|+++||++|. ||+||.|..+|||..+.. ....|
T Consensus 205 ~GGRlG~gdeq~~~iPkrV~gL~gh---~~~qisvs~~HslvLT~~g~--------Vys~GlN~~hqLG~~~~~~~~~~p 273 (1267)
T KOG0783|consen 205 AGGRLGFGDEQYNFIPKRVPGLIGH---KVIQISVSHTHSLVLTKFGS--------VYSWGLNGSHQLGLSNDELKKDDP 273 (1267)
T ss_pred CCCccCcCccccccccccccccccc---ceEEEEeecceeEEEeecce--------EEEeecCcccccCCcCchhhcCch
Confidence 9999999999889999999998876 79999999999999999999 999999999999987653 33445
Q ss_pred eEeeecC--CceEEEEEEecCCeeEEEecCCcEEEEeCCC-CCCCCCCCCCCCCCCCCceeeEEeeCCCCCCCCCCCcEE
Q 010683 242 EQVKELP--QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK-GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQ 318 (504)
Q Consensus 242 ~~v~~l~--~~~~i~~Ia~G~~hs~~lt~~G~vy~wG~n~-~lG~~~~~~~~~~~~~~~~~P~~i~~~~~~~~~~~~I~~ 318 (504)
.+|...- ....|+.|++|..|+++.++ -.||+||.|. |+|+.++ ......|+.+.. ....|+.
T Consensus 274 ~qI~a~r~kg~~~iIgvaAg~~hsVawt~-~~VY~wGlN~GQlGi~~n-------~~~Vt~Pr~l~~------~~~~v~~ 339 (1267)
T KOG0783|consen 274 IQITARRIKGFKQIIGVAAGKSHSVAWTD-TDVYSWGLNNGQLGISDN-------ISVVTTPRRLAG------LLSPVIH 339 (1267)
T ss_pred hhhhhHhhcchhhhhhhhcccceeeeeec-ceEEEecccCceecCCCC-------Cceeecchhhcc------cccceEE
Confidence 5543211 22269999999999999975 4799999986 7776432 334566765532 2345889
Q ss_pred EEecCceeEEEEcCCCeEEEEeC
Q 010683 319 VACGAAHTVLVTDDGYKLWSWGR 341 (504)
Q Consensus 319 I~~G~~ht~~lt~~G~~vy~WG~ 341 (504)
|+|...-|++++.++ .+|++-.
T Consensus 340 v~a~~~ATVc~~~~~-~i~~~ad 361 (1267)
T KOG0783|consen 340 VVATTRATVCLLQNN-SIIAFAD 361 (1267)
T ss_pred EEecCccEEEEecCC-cEEEEec
Confidence 999999999999988 8888764
No 7
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.82 E-value=6.8e-19 Score=190.24 Aligned_cols=228 Identities=28% Similarity=0.373 Sum_probs=162.0
Q ss_pred CCCCCCEEEEEecCceeEEEecCCcEEEecCCCCCCCCCCCCCcccccccceeecCCCCCeEEEEEecCCeEEEEEcCCC
Q 010683 68 HKAPIKICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGE 147 (504)
Q Consensus 68 ~~~~~~I~~Va~G~~hs~alt~~G~v~~wG~n~~gGqlg~g~~~~~~~~~p~~v~~l~~~~I~~Va~G~~hs~alt~~G~ 147 (504)
.-...||+.+.+...---.+.+||++|+.|.... ........+..+.+.-|.++|.|..|.++++.+|
T Consensus 565 P~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm-----------~~n~SSqmln~L~~~~isslAlGKsH~~av~rNG- 632 (3738)
T KOG1428|consen 565 PSNRRKIVHVCASGHVYGYVSENGKIFMGGLHTM-----------RVNVSSQMLNGLDNVMISSLALGKSHGVAVTRNG- 632 (3738)
T ss_pred CCCcceeEEEeeeeEEEEEEccCCeEEeecceeE-----------EecchHHHhhccccceeehhhccccceeEEEeCC-
Confidence 3456789988766655567899999999997543 0001122456778888999999999999999999
Q ss_pred eeecCCccEEEecCCCCCCCCCCCCCCc----------------------------------------------------
Q 010683 148 TYKGEDLVCYSWGANNNGQLGLGDRESR---------------------------------------------------- 175 (504)
Q Consensus 148 vy~~~~~~ly~wG~n~~GqLG~g~~~~~---------------------------------------------------- 175 (504)
.||+||.|+.+|+|.-.....
T Consensus 633 -------~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G~ 705 (3738)
T KOG1428|consen 633 -------HLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKGT 705 (3738)
T ss_pred -------eEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhcccccccccccccCCCCCCc
Confidence 579999999999996311100
Q ss_pred -----------------------------------------------ccceEEeecCCCCCCcEEEEeecCceEEEEecC
Q 010683 176 -----------------------------------------------LRPKIIETFNQDSPWAVYEVTCGSFHTALLTHR 208 (504)
Q Consensus 176 -----------------------------------------------~~p~~v~~l~~~~~~~I~~Ia~G~~ht~~Lt~~ 208 (504)
..|..|....+....++.+|+||..|+++|.+|
T Consensus 706 mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~sd 785 (3738)
T KOG1428|consen 706 MCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLASD 785 (3738)
T ss_pred ccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEeccCceEEEEecC
Confidence 011111111122235899999999999999999
Q ss_pred CCCCCCCCCeEEEEecCCCCCCCCCCCCceecceEeeecCCceEEEEEEecCCeeEEEecCCcEEEEeCCCCCCCCCCCC
Q 010683 209 KRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNAS 288 (504)
Q Consensus 209 G~~~~~~~~~vy~wG~n~~GQLG~g~~~~~~~p~~v~~l~~~~~i~~Ia~G~~hs~~lt~~G~vy~wG~n~~lG~~~~~~ 288 (504)
++ ||+||.|.+||||+|+......|++|.. +.+..+++|++|.+||+++..||.||.||.-...+++ .
T Consensus 786 ~~--------VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~-~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~---R 853 (3738)
T KOG1428|consen 786 RR--------VFTFGSNCHGQLGVGDTLSKNTPQQVIL-PSDTVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLA---R 853 (3738)
T ss_pred Cc--------EEEecCCcccccCcCccccCCCcceEEc-CCCCceEEEecCCCceEEEecCCcEEEeccccCcccc---C
Confidence 99 9999999999999999999999999964 4566899999999999999999999999986522221 1
Q ss_pred CCCCCCCCceeeEEeeCCCCCCCCCCCcEEEEecCceeEE
Q 010683 289 LTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVL 328 (504)
Q Consensus 289 ~~~~~~~~~~~P~~i~~~~~~~~~~~~I~~I~~G~~ht~~ 328 (504)
..+........|.++.++.+.- ......|.+..+.+++
T Consensus 854 P~~e~~~WNA~Pe~v~~~G~~f--~~~A~WIGAdGDss~i 891 (3738)
T KOG1428|consen 854 PAGEKAGWNAIPEKVSGFGPGF--NAFAGWIGADGDSSII 891 (3738)
T ss_pred ccccccccccCCCcCCCCCccc--cccceeeccCCCccee
Confidence 1233344556777776532211 1123355555444443
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.79 E-value=2.2e-18 Score=186.44 Aligned_cols=298 Identities=18% Similarity=0.232 Sum_probs=188.3
Q ss_pred EEEEeeeeEEEecccceeeEEEcCCCceecCCCCcccceeeehhhccCCCCCCCCccccCCCCCCCEEEEEecCceeEEE
Q 010683 8 YHYYLCFTCFFMPFICYTSLNCCMDGQLGFSGSNSLVPCVIEQFLTIGAPDSLEDDSKTNHKAPIKICSVKAGGMMSLAI 87 (504)
Q Consensus 8 ~~~~~~~~i~~ia~G~~h~~~l~~~GqlG~~~~~~~~p~~i~~~~~l~~~~~~~~~~~~~~~~~~~I~~Va~G~~hs~al 87 (504)
.|.-+....+.+-+++...+.-..+|++++.+.+... .+ .+-| ..=.+...+.+|++|+.|-..+.++
T Consensus 473 L~~~~~~qtv~L~~~RE~A~iqa~sGKvYYaGn~t~~--Gl---~e~G-------~nWmEL~l~~~IVq~SVG~D~~~~~ 540 (3738)
T KOG1428|consen 473 LPANLHPQTVDLHFTREMAFIQARSGKVYYAGNGTRF--GL---FETG-------NNWMELCLPEPIVQISVGIDTIMFR 540 (3738)
T ss_pred hccccCchheecccchhhhhhhhcCccEEEecCccEE--eE---EccC-------CceEEecCCCceEEEEeccchhhee
Confidence 3444445566677778888888888888766544321 00 0000 0111223357899999997666555
Q ss_pred --ecCCcEEEecCCCCCCCCCCCCCcccccccceeecCCCCCeEEEEEecCCeEEEEEcCCCeeecCCccEEEecCCCCC
Q 010683 88 --DNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNG 165 (504)
Q Consensus 88 --t~~G~v~~wG~n~~gGqlg~g~~~~~~~~~p~~v~~l~~~~I~~Va~G~~hs~alt~~G~vy~~~~~~ly~wG~n~~G 165 (504)
..+|.+++-|+... .+. . .+....+..+|+.|.+...-.-.+.++|+ +|..|....-
T Consensus 541 ~~A~~G~I~~v~D~k~-----~~~---~-----Rr~~P~n~rKIv~v~~s~~VY~~vSenGk--------ifM~G~~tm~ 599 (3738)
T KOG1428|consen 541 SGAGHGWIASVDDKKR-----NGR---L-----RRLVPSNRRKIVHVCASGHVYGYVSENGK--------IFMGGLHTMR 599 (3738)
T ss_pred eccCcceEEeccCccc-----ccc---h-----hhcCCCCcceeEEEeeeeEEEEEEccCCe--------EEeecceeEE
Confidence 45566666664332 110 1 11122233468887544433345778885 5777742211
Q ss_pred CCCCCCCCCcccceEEeecCCCCCCcEEEEeecCceEEEEecCCCCCCCCCCeEEEEecCCCCCCCCCCCCc--------
Q 010683 166 QLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS-------- 237 (504)
Q Consensus 166 qLG~g~~~~~~~p~~v~~l~~~~~~~I~~Ia~G~~ht~~Lt~~G~~~~~~~~~vy~wG~n~~GQLG~g~~~~-------- 237 (504)
.......+..++. ..|.+++.|..|+++++++|+ ||+||.|+.+|+|.-....
T Consensus 600 --------~n~SSqmln~L~~---~~isslAlGKsH~~av~rNG~--------l~T~GlNN~~QCGRVEs~sTt~s~~~s 660 (3738)
T KOG1428|consen 600 --------VNVSSQMLNGLDN---VMISSLALGKSHGVAVTRNGH--------LFTWGLNNMNQCGRVESTSTTSSPRHS 660 (3738)
T ss_pred --------ecchHHHhhcccc---ceeehhhccccceeEEEeCCe--------EEEEecCCcccccccccccccCCcccc
Confidence 0112233444443 379999999999999999999 9999999999999621100
Q ss_pred --------------------------------------------------------------------------------
Q 010683 238 -------------------------------------------------------------------------------- 237 (504)
Q Consensus 238 -------------------------------------------------------------------------------- 237 (504)
T Consensus 661 ~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHv 740 (3738)
T KOG1428|consen 661 GRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHV 740 (3738)
T ss_pred cceeecccCCccceeecCCcchhhhcccccccccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhh
Confidence
Q ss_pred ----eecceEeee---------cCCceEEEEEEecCCeeEEEecCCcEEEEeCCC--CCCCCCCCCCCCCCCCCceeeEE
Q 010683 238 ----ALVPEQVKE---------LPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPIL 302 (504)
Q Consensus 238 ----~~~p~~v~~---------l~~~~~i~~Ia~G~~hs~~lt~~G~vy~wG~n~--~lG~~~~~~~~~~~~~~~~~P~~ 302 (504)
...|+++.. -+-..++++|+||.+|+++|-+|++||.||.|- |+|.+. ......|+.
T Consensus 741 Q~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GD--------t~Sk~~Pq~ 812 (3738)
T KOG1428|consen 741 QFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGD--------TLSKNTPQQ 812 (3738)
T ss_pred eecccccccccccCchheeeccCCcceeEEEEeccCceEEEEecCCcEEEecCCcccccCcCc--------cccCCCcce
Confidence 001111110 011237999999999999999999999999985 555532 234557877
Q ss_pred eeCCCCCCCCCCCcEEEEecCceeEEEEcCCCeEEEEeCCCCCCCCCCCCC-CeecceEeeCCCcchhhc
Q 010683 303 ISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTI-DFFAPAIVLWPPLTEEFK 371 (504)
Q Consensus 303 i~~~~~~~~~~~~I~~I~~G~~ht~~lt~~G~~vy~WG~n~~GqLG~g~~~-~~~~P~~v~~p~~~~~~~ 371 (504)
|.. +...-|+||++|++||+++..|| .||+||.=..||||.+-.. ..+...+-+.|....+|.
T Consensus 813 V~~-----~~~t~~vQVaAGSNHT~l~~~DG-sVFTFGaF~KGQL~RP~~e~~~WNA~Pe~v~~~G~~f~ 876 (3738)
T KOG1428|consen 813 VIL-----PSDTVIVQVAAGSNHTILRANDG-SVFTFGAFGKGQLARPAGEKAGWNAIPEKVSGFGPGFN 876 (3738)
T ss_pred EEc-----CCCCceEEEecCCCceEEEecCC-cEEEeccccCccccCccccccccccCCCcCCCCCcccc
Confidence 776 33445899999999999999999 9999999999999987543 222222233355555553
No 9
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.16 E-value=6.6e-11 Score=85.69 Aligned_cols=49 Identities=35% Similarity=0.563 Sum_probs=44.2
Q ss_pred CeEEEEecCCCCCCC-CCCCCceecceEeeecCCceEEEEEEecCCeeEEE
Q 010683 217 SMCWTFGLGENGQLG-HGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVV 266 (504)
Q Consensus 217 ~~vy~wG~n~~GQLG-~g~~~~~~~p~~v~~l~~~~~i~~Ia~G~~hs~~l 266 (504)
|.||+||.|.+|||| .+.......|++|..+. ..+|++|+||.+||++|
T Consensus 2 G~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~-~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 2 GRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLS-GVRIVQVACGSDHTLAL 51 (51)
T ss_dssp SEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGT-TSEEEEEEEESSEEEEE
T ss_pred CcEEEEECCCCCCCCCCCCCCceeEEEEECCCC-CCCEEEEEeCcceEEEC
Confidence 459999999999999 88888999999998774 47899999999999987
No 10
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.11 E-value=9e-11 Score=84.97 Aligned_cols=49 Identities=39% Similarity=0.621 Sum_probs=44.5
Q ss_pred ccEEEecCCCCCCCC-CCCCCCcccceEEeecCCCCCCcEEEEeecCceEEEE
Q 010683 154 LVCYSWGANNNGQLG-LGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALL 205 (504)
Q Consensus 154 ~~ly~wG~n~~GqLG-~g~~~~~~~p~~v~~l~~~~~~~I~~Ia~G~~ht~~L 205 (504)
+.||+||.|.+|||| .++......|++|..+... +|++|+||.+||++|
T Consensus 2 G~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~---~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 2 GRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGV---RIVQVACGSDHTLAL 51 (51)
T ss_dssp SEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTS---EEEEEEEESSEEEEE
T ss_pred CcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCC---CEEEEEeCcceEEEC
Confidence 478999999999999 7888889999999988763 899999999999987
No 11
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.01 E-value=5.6e-10 Score=71.04 Aligned_cols=30 Identities=43% Similarity=0.902 Sum_probs=25.9
Q ss_pred cEEEEecCceeEEEEcCCCeEEEEeCCCCCC
Q 010683 316 PVQVACGAAHTVLVTDDGYKLWSWGRGRSGV 346 (504)
Q Consensus 316 I~~I~~G~~ht~~lt~~G~~vy~WG~n~~Gq 346 (504)
|++|+||..|+++|+++| +||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g-~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDG-EVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TT-EEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCC-CEEEEcCCcCCC
Confidence 679999999999999999 999999999998
No 12
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=98.92 E-value=1.7e-09 Score=68.85 Aligned_cols=30 Identities=33% Similarity=0.705 Sum_probs=25.9
Q ss_pred EEEEeecCceEEEEecCCCCCCCCCCeEEEEecCCCCC
Q 010683 192 VYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQ 229 (504)
Q Consensus 192 I~~Ia~G~~ht~~Lt~~G~~~~~~~~~vy~wG~n~~GQ 229 (504)
|++|+||.+|+++|+++|+ ||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~--------v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGE--------VYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTE--------EEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCC--------EEEEcCCcCCC
Confidence 6899999999999999999 99999999998
No 13
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=2.8e-11 Score=129.22 Aligned_cols=142 Identities=31% Similarity=0.541 Sum_probs=117.4
Q ss_pred ceeecCCCCCeEEEEEecCCeEEEEEcCCCeeecCCccEEEecCCCCCCCCCCCCCCcccceEEeecCCCCCCcEEEEee
Q 010683 118 PSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTC 197 (504)
Q Consensus 118 p~~v~~l~~~~I~~Va~G~~hs~alt~~G~vy~~~~~~ly~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~~~~I~~Ia~ 197 (504)
|..+..+...++.+++||++|+++++..| .++.||.|.+||+|.+.......|..++.+.+. +..+|+|
T Consensus 5 ~~~~~~l~~k~~lq~~cGn~hclal~~~g--------~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~---p~a~v~~ 73 (850)
T KOG0941|consen 5 PRLVLILNYKHILQVGCGNNHCLALSCAG--------ELFVWGMNNNGQLGRALYFPDAKPEPVESLKGV---PLAQVSA 73 (850)
T ss_pred hHHHHHHhhhhhhhhccccHHHHhhhccC--------CeeeccCCccchhhhhccCCCCCCccchhhcCC---cHHHHhc
Confidence 44555556668999999999999999999 569999999999999854444448888877764 7889999
Q ss_pred cCceEEEEec-------CCCCCCCCCCeEEEEecCCCCCCCCCCCCceecceEeeecCCceEEEEEEecCCeeEEE-ecC
Q 010683 198 GSFHTALLTH-------RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVV-SSA 269 (504)
Q Consensus 198 G~~ht~~Lt~-------~G~~~~~~~~~vy~wG~n~~GQLG~g~~~~~~~p~~v~~l~~~~~i~~Ia~G~~hs~~l-t~~ 269 (504)
|.+|+++++. .|. ++++|....||+|+....+...|..+..+ -+..+..|+||..|+++. ..-
T Consensus 74 g~~hs~~lS~~~~~lt~e~~--------~fs~Ga~~~~q~~h~~~~~~~~~~~v~e~-i~~~~t~ia~~~~ht~a~v~~l 144 (850)
T KOG0941|consen 74 GEAHSFALSSHTVLLTDEGK--------VFSFGAGSTGQLGHSLTENEVLPLLVLEL-IGSRVTRIACVRGHTLAIVPRL 144 (850)
T ss_pred CCCcchhhhhchhhcchhcc--------ccccCCcccccccccccccccccHHHHHH-HhhhhHHHHHHHHHHHhhhhhh
Confidence 9999888776 776 99999999999999777777778777655 345799999999999875 667
Q ss_pred CcEEEEeCCC
Q 010683 270 GDVWSWGMEK 279 (504)
Q Consensus 270 G~vy~wG~n~ 279 (504)
|++|.+|.+.
T Consensus 145 ~qsf~~~~~~ 154 (850)
T KOG0941|consen 145 GQSFSFGKGA 154 (850)
T ss_pred cceeecccCC
Confidence 9999999775
No 14
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=2e-10 Score=122.74 Aligned_cols=177 Identities=26% Similarity=0.369 Sum_probs=131.9
Q ss_pred CCCEEEEEecCceeEEEecCCcEEEecCCCCCCCCCCCCCcccccccceeecCCCCCeEEEEEecCCeEEEEEc------
Q 010683 71 PIKICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVS------ 144 (504)
Q Consensus 71 ~~~I~~Va~G~~hs~alt~~G~v~~wG~n~~gGqlg~g~~~~~~~~~p~~v~~l~~~~I~~Va~G~~hs~alt~------ 144 (504)
..+|.+++||..|+++++..|++++||.|.+ ||++.+ ....... |.+++.+.|.+..+|+||.+|+++++.
T Consensus 13 ~k~~lq~~cGn~hclal~~~g~~~~wg~~~~-g~~~~~-~~~~~~~-p~~~~sl~g~p~a~v~~g~~hs~~lS~~~~~lt 89 (850)
T KOG0941|consen 13 YKHILQVGCGNNHCLALSCAGELFVWGMNNN-GQLGRA-LYFPDAK-PEPVESLKGVPLAQVSAGEAHSFALSSHTVLLT 89 (850)
T ss_pred hhhhhhhccccHHHHhhhccCCeeeccCCcc-chhhhh-ccCCCCC-CccchhhcCCcHHHHhcCCCcchhhhhchhhcc
Confidence 4679999999999999999999999999999 899998 3444444 999999999999999999999988876
Q ss_pred -CCCeeecCCccEEEecCCCCCCCCCCCCCCcccceEEeecCCCCCCcEEEEeecCceEEEEecCCCCCCCCCCeEEEEe
Q 010683 145 -AGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFG 223 (504)
Q Consensus 145 -~G~vy~~~~~~ly~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~~~~I~~Ia~G~~ht~~Lt~~G~~~~~~~~~vy~wG 223 (504)
+| ..+++|....||+|+.-+.....|..+..+-.. .+..|+||..|+.+.... -+.+|.+|
T Consensus 90 ~e~--------~~fs~Ga~~~~q~~h~~~~~~~~~~~v~e~i~~---~~t~ia~~~~ht~a~v~~-------l~qsf~~~ 151 (850)
T KOG0941|consen 90 DEG--------KVFSFGAGSTGQLGHSLTENEVLPLLVLELIGS---RVTRIACVRGHTLAIVPR-------LGQSFSFG 151 (850)
T ss_pred hhc--------cccccCCcccccccccccccccccHHHHHHHhh---hhHHHHHHHHHHHhhhhh-------hcceeecc
Confidence 77 579999999999999777777777776655544 799999999999877643 22389999
Q ss_pred cCCCCCCCCCCCCceecceEeeecC--CceEEEEEEecCCeeEEEecCCc
Q 010683 224 LGENGQLGHGTTQSALVPEQVKELP--QYVYLVSVDCGLFHTSVVSSAGD 271 (504)
Q Consensus 224 ~n~~GQLG~g~~~~~~~p~~v~~l~--~~~~i~~Ia~G~~hs~~lt~~G~ 271 (504)
.+..| .+.-.....+.....-. ....+..+..|.+.+..+...+.
T Consensus 152 ~~~sG---k~~i~s~s~~~~l~~~d~~~~~~~~~~~~g~dq~~~l~~~~~ 198 (850)
T KOG0941|consen 152 KGASG---KGVIVSLSGEDLLRDHDSEKDHRCSLAFAGGDQTFSLSSKGE 198 (850)
T ss_pred cCCCC---CceeeccchhhhcccccHHHHHHHHHHhcCCCceEEEEeecc
Confidence 98877 11001111110011000 11234557888888888866554
No 15
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=93.70 E-value=3.7 Score=43.73 Aligned_cols=104 Identities=14% Similarity=0.110 Sum_probs=69.5
Q ss_pred ecCceeEEEecCCcEEEecCCCCCCCCCCCCCcccccccceeecCC-CCCeEEEEEecC-CeEEEEEcCCCeeecCCccE
Q 010683 79 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDF-HGHTVVKVACGS-EHVVALVSAGETYKGEDLVC 156 (504)
Q Consensus 79 ~G~~hs~alt~~G~v~~wG~n~~gGqlg~g~~~~~~~~~p~~v~~l-~~~~I~~Va~G~-~hs~alt~~G~vy~~~~~~l 156 (504)
.|.....||..+|++|.=- |... . .+.-...+.. ....+++|++|. .-..+++.+|.| +
T Consensus 190 ~g~~~awAI~s~Gd~y~Rt--------Gvs~--~--~P~GraW~~i~~~t~L~qISagPtg~VwAvt~nG~v-------f 250 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYLRT--------GVSV--D--RPCGRAWKVICPYTDLSQISAGPTGVVWAVTENGAV-------F 250 (705)
T ss_pred CCceEEEEEecCCcEEEec--------cccC--C--CCCCceeeecCCCCccceEeecCcceEEEEeeCCcE-------E
Confidence 5566677888888888632 1111 0 0000111111 112588999999 778899999997 5
Q ss_pred EEecCCCCCCCCCCCCCCcccceEEeecCCCCCCcEEEEeecCceEEEEecCCC
Q 010683 157 YSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKR 210 (504)
Q Consensus 157 y~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~~~~I~~Ia~G~~ht~~Lt~~G~ 210 (504)
|--|-..+.+.|..-. +..+|.... .++.|+.|....-+|+.+|+
T Consensus 251 ~R~GVsRqNp~GdsWk-dI~tP~~a~--------~~v~iSvGt~t~Waldndg~ 295 (705)
T KOG3669|consen 251 YREGVSRQNPEGDSWK-DIVTPRQAL--------EPVCISVGTQTLWALDNDGN 295 (705)
T ss_pred EEecccccCCCCchhh-hccCccccc--------ceEEEEeccceEEEEecCCc
Confidence 8889888887775433 455555543 48899999999999999998
No 16
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=92.22 E-value=1.4 Score=46.77 Aligned_cols=71 Identities=14% Similarity=0.222 Sum_probs=56.6
Q ss_pred cEEEEeecC-ceEEEEecCCCCCCCCCCeEEEEecCCCCCCCCCCCCceecceEeeecCCceEEEEEEecCCeeEEEecC
Q 010683 191 AVYEVTCGS-FHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSA 269 (504)
Q Consensus 191 ~I~~Ia~G~-~ht~~Lt~~G~~~~~~~~~vy~wG~n~~GQLG~g~~~~~~~p~~v~~l~~~~~i~~Ia~G~~hs~~lt~~ 269 (504)
.+.+|++|. .-..+++.+|.+ +|--|-.++.+.|..-. ++.+|.... .++.|+.|....-+|+.+
T Consensus 228 ~L~qISagPtg~VwAvt~nG~v-------f~R~GVsRqNp~GdsWk-dI~tP~~a~------~~v~iSvGt~t~Waldnd 293 (705)
T KOG3669|consen 228 DLSQISAGPTGVVWAVTENGAV-------FYREGVSRQNPEGDSWK-DIVTPRQAL------EPVCISVGTQTLWALDND 293 (705)
T ss_pred ccceEeecCcceEEEEeeCCcE-------EEEecccccCCCCchhh-hccCccccc------ceEEEEeccceEEEEecC
Confidence 478999999 778899999996 88899988888885433 444554443 289999998888899999
Q ss_pred CcEEEE
Q 010683 270 GDVWSW 275 (504)
Q Consensus 270 G~vy~w 275 (504)
|.+|.-
T Consensus 294 g~lwfr 299 (705)
T KOG3669|consen 294 GNLWFR 299 (705)
T ss_pred CcEEEE
Confidence 999964
No 17
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=90.51 E-value=21 Score=37.12 Aligned_cols=97 Identities=19% Similarity=0.204 Sum_probs=51.7
Q ss_pred EEEecccceeeEEEcCCCceecCC--CCcccceeeehhhccCCCCCCCCccccCCCCCCCEEEEEec--CceeEEEecCC
Q 010683 16 CFFMPFICYTSLNCCMDGQLGFSG--SNSLVPCVIEQFLTIGAPDSLEDDSKTNHKAPIKICSVKAG--GMMSLAIDNAG 91 (504)
Q Consensus 16 i~~ia~G~~h~~~l~~~GqlG~~~--~~~~~p~~i~~~~~l~~~~~~~~~~~~~~~~~~~I~~Va~G--~~hs~alt~~G 91 (504)
+..-.--..+.+|-+..|+|++|. ++.+--..-. --..|..+... +.|.+--.+||
T Consensus 86 al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~a--------------------HYQ~ITcL~fs~dgs~iiTgskDg 145 (476)
T KOG0646|consen 86 ALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSA--------------------HYQSITCLKFSDDGSHIITGSKDG 145 (476)
T ss_pred eeecCCCceEEEeecccCcEEEEEeccccHHHHHHh--------------------hccceeEEEEeCCCcEEEecCCCc
Confidence 333333445666666788888884 3332111100 11234444444 55555556889
Q ss_pred cEEEecCCCCCCCCCCCCCcccccccceeecCCCCCeEEEEEecCCe
Q 010683 92 ALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEH 138 (504)
Q Consensus 92 ~v~~wG~n~~gGqlg~g~~~~~~~~~p~~v~~l~~~~I~~Va~G~~h 138 (504)
.|.+|--.+--.+ .......|.....-....|+++.+|..-
T Consensus 146 ~V~vW~l~~lv~a------~~~~~~~p~~~f~~HtlsITDl~ig~Gg 186 (476)
T KOG0646|consen 146 AVLVWLLTDLVSA------DNDHSVKPLHIFSDHTLSITDLQIGSGG 186 (476)
T ss_pred cEEEEEEEeeccc------ccCCCccceeeeccCcceeEEEEecCCC
Confidence 9999986543100 1111445555554455668888887763
No 18
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=89.26 E-value=2.8 Score=49.98 Aligned_cols=113 Identities=14% Similarity=0.104 Sum_probs=67.6
Q ss_pred CCCCCeEEEEE-ecCCeEEEEEcCCCeeecCCccEEEecCCCCCCCCCCCCCCcccceEEe--ecCCCCCCcEEEEeecC
Q 010683 123 DFHGHTVVKVA-CGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIE--TFNQDSPWAVYEVTCGS 199 (504)
Q Consensus 123 ~l~~~~I~~Va-~G~~hs~alt~~G~vy~~~~~~ly~wG~n~~GqLG~g~~~~~~~p~~v~--~l~~~~~~~I~~Ia~G~ 199 (504)
.+++..|..+| .+.++.++|++.|++ +++. .. ..|+.+. .+.. .|++|++-.
T Consensus 699 Gl~~~~i~a~Avv~~~~fvald~qg~l------t~h~-k~--------------g~p~~l~~~gl~G----~ik~l~lD~ 753 (1774)
T PF11725_consen 699 GLEDRVITAFAVVNDNKFVALDDQGDL------TAHQ-KP--------------GRPVPLSRPGLSG----EIKDLALDE 753 (1774)
T ss_pred CCCcCcceeEEEEcCCceEEeccCCcc------cccc-CC--------------CCCccCCCCCCCc----chhheeecc
Confidence 34444555554 467788888888864 2221 10 0133332 3332 799999999
Q ss_pred ceEE-EEecCCCCCCCCCCeEEEEecCCCCCCCCCCCCceecceEeeecCCceEEEEEEecCCeeEEEecCC
Q 010683 200 FHTA-LLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAG 270 (504)
Q Consensus 200 ~ht~-~Lt~~G~~~~~~~~~vy~wG~n~~GQLG~g~~~~~~~p~~v~~l~~~~~i~~Ia~G~~hs~~lt~~G 270 (504)
.|.+ +++++|+ +|.-=.-.+.+.-.+ ......+++|. +|.+.+|..+....+|.+.+.-++
T Consensus 754 ~~nL~Alt~~G~--------Lf~~~k~~WQ~~~~~-~~~~~~W~~v~-lP~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 754 KQNLYALTSTGE--------LFRLPKEAWQGNAEG-DQMAAKWQKVA-LPDEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred ccceeEecCCCc--------eeecCHHHhhCcccC-CccccCceecc-CCCCCchhhhhcCCCCceEEEecC
Confidence 8765 7889998 996332211111111 11124566664 567788999999999998876555
No 19
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=81.51 E-value=21 Score=34.51 Aligned_cols=75 Identities=19% Similarity=0.165 Sum_probs=54.0
Q ss_pred eeeEEEEEeeeeEEEecccceeeEEEcCCCceecCCCC--cccceeeehhhccCCCCCCCCccccCCCCCCCEEEEEec-
Q 010683 4 QHYYYHYYLCFTCFFMPFICYTSLNCCMDGQLGFSGSN--SLVPCVIEQFLTIGAPDSLEDDSKTNHKAPIKICSVKAG- 80 (504)
Q Consensus 4 ~~~~~~~~~~~~i~~ia~G~~h~~~l~~~GqlG~~~~~--~~~p~~i~~~~~l~~~~~~~~~~~~~~~~~~~I~~Va~G- 80 (504)
|+.|-|- .++..+.+--.+.+.+..+.+|.|..|+-+ +....++. .....|.+++..
T Consensus 118 qR~~~~~-spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liP-------------------e~~~~i~sl~v~~ 177 (311)
T KOG0315|consen 118 QRNYQHN-SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIP-------------------EDDTSIQSLTVMP 177 (311)
T ss_pred chhccCC-CCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCC-------------------CCCcceeeEEEcC
Confidence 4444444 889999999999999999999999999733 22111111 113556677666
Q ss_pred -CceeEEEecCCcEEEecC
Q 010683 81 -GMMSLAIDNAGALWMWGN 98 (504)
Q Consensus 81 -~~hs~alt~~G~v~~wG~ 98 (504)
+...+|+++.|+.|+|--
T Consensus 178 dgsml~a~nnkG~cyvW~l 196 (311)
T KOG0315|consen 178 DGSMLAAANNKGNCYVWRL 196 (311)
T ss_pred CCcEEEEecCCccEEEEEc
Confidence 667788899999999975
No 20
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=76.00 E-value=0.31 Score=55.37 Aligned_cols=128 Identities=13% Similarity=0.153 Sum_probs=82.0
Q ss_pred CCCeEEEEEecCCeEEEEEcCCCeeecCCccEEEecCCCCCCCCCC--CCCCcccceE-EeecCCCCCCcEEEEeecCce
Q 010683 125 HGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLG--DRESRLRPKI-IETFNQDSPWAVYEVTCGSFH 201 (504)
Q Consensus 125 ~~~~I~~Va~G~~hs~alt~~G~vy~~~~~~ly~wG~n~~GqLG~g--~~~~~~~p~~-v~~l~~~~~~~I~~Ia~G~~h 201 (504)
.+.+++.|.+-.+..++|..+|+ +|.|-+...--|-.. -..+...|.. ...+.. .+|+.+++..--
T Consensus 372 dan~~I~I~A~s~el~AlhrkGe--------lYqWaWdESEglddplai~kn~dHPd~a~iG~hg---e~ii~lSanniR 440 (3015)
T KOG0943|consen 372 DANKFICIGALSSELLALHRKGE--------LYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHG---EKIILLSANNIR 440 (3015)
T ss_pred CCCeeEEeehhHHHHHHHhhCCc--------eeeeecccccCCCChhhcccCCCCCccceecccC---CeeEEeecCcee
Confidence 35678888888888999999996 567766544333221 1122333322 112333 289999999999
Q ss_pred EEEEecCCCCCCCCCCeEEEEecCCCCCCCCCCCCc--eecceEeeecCCceEEEEEEecCCeeEEEecCCcEEEEeC
Q 010683 202 TALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQS--ALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGM 277 (504)
Q Consensus 202 t~~Lt~~G~~~~~~~~~vy~wG~n~~GQLG~g~~~~--~~~p~~v~~l~~~~~i~~Ia~G~~hs~~lt~~G~vy~wG~ 277 (504)
.-++|++|+ |-+|=+ .+|.+.... ...-+.+. .++..+++..|...|+++...|+-+|-||-
T Consensus 441 ~si~T~ngh--------lasWlD----EcgagV~fkLa~ea~Tkie--ed~~maVqd~~~adhlaAf~~dniihWcGi 504 (3015)
T KOG0943|consen 441 ASIATENGH--------LASWLD----ECGAGVAFKLAHEAQTKIE--EDGEMAVQDHCCADHLAAFLEDNIIHWCGI 504 (3015)
T ss_pred eeeeecCCc--------hhhHHh----hhhhhhhhhhhhhhhhhhh--hhhHHHHHHHHHHHHHHHHhhhceeeEEee
Confidence 999999999 888854 223222111 11112222 134567777888999999999999999995
No 21
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=72.98 E-value=0.42 Score=54.40 Aligned_cols=136 Identities=15% Similarity=0.127 Sum_probs=83.6
Q ss_pred CCCCCEEEEEecCceeEEEecCCcEEEecCCCCCCCCCCCCCcccccccce-eecCCCCCeEEEEEecCCeEEEEEcCCC
Q 010683 69 KAPIKICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPS-PVWDFHGHTVVKVACGSEHVVALVSAGE 147 (504)
Q Consensus 69 ~~~~~I~~Va~G~~hs~alt~~G~v~~wG~n~~gGqlg~g~~~~~~~~~p~-~v~~l~~~~I~~Va~G~~hs~alt~~G~ 147 (504)
....+++.|.+-.+-.+||..+|++|.|-+....| +...-.-..+...|. -...+.+.+|+.+++.+-..-++|.+|+
T Consensus 371 ddan~~I~I~A~s~el~AlhrkGelYqWaWdESEg-lddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~ngh 449 (3015)
T KOG0943|consen 371 DDANKFICIGALSSELLALHRKGELYQWAWDESEG-LDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGH 449 (3015)
T ss_pred CCCCeeEEeehhHHHHHHHhhCCceeeeecccccC-CCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCc
Confidence 34567888888888899999999999999876521 111000011111221 2235678899999999988889999995
Q ss_pred eeecCCccEEEecCCCCCCCCCCCCC--CcccceEEeecCCCCCCcEEEEeecCceEEEEecCCCCCCCCCCeEEEEecC
Q 010683 148 TYKGEDLVCYSWGANNNGQLGLGDRE--SRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLG 225 (504)
Q Consensus 148 vy~~~~~~ly~wG~n~~GqLG~g~~~--~~~~p~~v~~l~~~~~~~I~~Ia~G~~ht~~Lt~~G~~~~~~~~~vy~wG~n 225 (504)
|-+|=.. +|.+-.. ....-+.+. .. ...+++-.|-..|+++...+.. +|-||--
T Consensus 450 --------lasWlDE----cgagV~fkLa~ea~Tkie-ed---~~maVqd~~~adhlaAf~~dni--------ihWcGiV 505 (3015)
T KOG0943|consen 450 --------LASWLDE----CGAGVAFKLAHEAQTKIE-ED---GEMAVQDHCCADHLAAFLEDNI--------IHWCGIV 505 (3015)
T ss_pred --------hhhHHhh----hhhhhhhhhhhhhhhhhh-hh---hHHHHHHHHHHHHHHHHhhhce--------eeEEeee
Confidence 5677321 1111111 111112222 11 1256777788889888888777 9999965
Q ss_pred CCCC
Q 010683 226 ENGQ 229 (504)
Q Consensus 226 ~~GQ 229 (504)
-+-|
T Consensus 506 Pf~e 509 (3015)
T KOG0943|consen 506 PFSE 509 (3015)
T ss_pred eehh
Confidence 4444
No 22
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=71.65 E-value=87 Score=35.61 Aligned_cols=75 Identities=17% Similarity=0.233 Sum_probs=47.0
Q ss_pred ecCceeEEEecCCc-EEEecCCCCCCCCCCCCCcccccccceeecCCCCCeEEEEEecCCeEEEEEcCCCeeecCCccEE
Q 010683 79 AGGMMSLAIDNAGA-LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCY 157 (504)
Q Consensus 79 ~G~~hs~alt~~G~-v~~wG~n~~gGqlg~g~~~~~~~~~p~~v~~l~~~~I~~Va~G~~hs~alt~~G~vy~~~~~~ly 157 (504)
.++...++++.+|+ |+++|++.. ..-... ......|..+.. .+..|..|+|-.+|.+.-+.++-| .+|
T Consensus 13 t~G~t~i~~d~~gefi~tcgsdg~--ir~~~~--~sd~e~P~ti~~-~g~~v~~ia~~s~~f~~~s~~~tv------~~y 81 (933)
T KOG1274|consen 13 TGGLTLICYDPDGEFICTCGSDGD--IRKWKT--NSDEEEPETIDI-SGELVSSIACYSNHFLTGSEQNTV------LRY 81 (933)
T ss_pred cCceEEEEEcCCCCEEEEecCCCc--eEEeec--CCcccCCchhhc-cCceeEEEeecccceEEeeccceE------EEe
Confidence 44556677777765 566666543 111111 111234544432 567899999999999999999987 688
Q ss_pred EecCCCC
Q 010683 158 SWGANNN 164 (504)
Q Consensus 158 ~wG~n~~ 164 (504)
.+++...
T Consensus 82 ~fps~~~ 88 (933)
T KOG1274|consen 82 KFPSGEE 88 (933)
T ss_pred eCCCCCc
Confidence 8886443
No 23
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=68.04 E-value=24 Score=33.58 Aligned_cols=30 Identities=23% Similarity=0.433 Sum_probs=26.3
Q ss_pred CCCEEEEEecCceeEEEecCCcEEEecCCC
Q 010683 71 PIKICSVKAGGMMSLAIDNAGALWMWGNCP 100 (504)
Q Consensus 71 ~~~I~~Va~G~~hs~alt~~G~v~~wG~n~ 100 (504)
+.+++.+.|-+.+.++||++|.+|+|--..
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~ 41 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLKK 41 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence 457888999999999999999999997654
No 24
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=67.16 E-value=11 Score=23.18 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=19.9
Q ss_pred CCeEEEEEecCCeEEEEEcCCCe
Q 010683 126 GHTVVKVACGSEHVVALVSAGET 148 (504)
Q Consensus 126 ~~~I~~Va~G~~hs~alt~~G~v 148 (504)
++.|..|++|....++.|+.+-+
T Consensus 1 gE~i~aia~g~~~vavaTS~~~l 23 (27)
T PF12341_consen 1 GEEIEAIAAGDSWVAVATSAGYL 23 (27)
T ss_pred CceEEEEEccCCEEEEEeCCCeE
Confidence 46799999999999999998854
No 25
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=66.80 E-value=2.4e+02 Score=32.42 Aligned_cols=164 Identities=10% Similarity=-0.008 Sum_probs=79.5
Q ss_pred EecCceeEEEecCCcEEEecCCCCCCCCCCCCCcccccccceeecCCCCCeEEEEEec-----CCeEEEEEcCCCeeecC
Q 010683 78 KAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACG-----SEHVVALVSAGETYKGE 152 (504)
Q Consensus 78 a~G~~hs~alt~~G~v~~wG~n~~gGqlg~g~~~~~~~~~p~~v~~l~~~~I~~Va~G-----~~hs~alt~~G~vy~~~ 152 (504)
+....+.+++|+.|++|..-...- -.......-.+....+....+++|+.+.+- ....+++|.+|.+
T Consensus 543 ~~t~d~LllfTs~Grv~~l~~~~I----P~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~Gyi---- 614 (800)
T TIGR01063 543 ASTHDYLLFFTNRGKVYWLKVYQI----PEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVV---- 614 (800)
T ss_pred ecCCCeEEEEeCCCcEEEEEhhhC----cCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEE----
Confidence 344667888999999999944332 111100000111111223356778777652 2356788888843
Q ss_pred CccEEEecCCCCCCCCCCCCCCcccceEEeecCCCCCCcEEEE--eecCceEEEEecCCCCCCCCCCeEEEEecCCCCCC
Q 010683 153 DLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEV--TCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQL 230 (504)
Q Consensus 153 ~~~ly~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~~~~I~~I--a~G~~ht~~Lt~~G~~~~~~~~~vy~wG~n~~GQL 230 (504)
--.-.+.+-... + .....-.+... ..++.+ +....+.+++|++|+ +|.+=...--..
T Consensus 615 ----KRi~l~~~~~~~------r-~G~~aiklke~--D~lv~v~~~~~~d~lll~Ts~Gr--------~~r~~v~eIp~~ 673 (800)
T TIGR01063 615 ----KKTSLTEFSNIR------S-NGIIAIKLDDG--DELISVRLTSGDDEVMLGSKNGK--------AVRFPEEDVRPM 673 (800)
T ss_pred ----EEEEhHHhhhhc------c-CCcccccCCCC--CEEEEEEEeCCCCEEEEEECCCc--------EEEEEhhhcCCc
Confidence 211111110000 0 00000011111 134333 233456899999999 888866544333
Q ss_pred CCCCCCceecceEeeecCCceEEEEEEecC--CeeEEEecCCcEEEE
Q 010683 231 GHGTTQSALVPEQVKELPQYVYLVSVDCGL--FHTSVVSSAGDVWSW 275 (504)
Q Consensus 231 G~g~~~~~~~p~~v~~l~~~~~i~~Ia~G~--~hs~~lt~~G~vy~w 275 (504)
|.... ...+-.+..+.+|+.+.+-. .+-+++|++|.+.-.
T Consensus 674 gr~~~-----Gv~~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~ 715 (800)
T TIGR01063 674 GRAAR-----GVRGIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRT 715 (800)
T ss_pred CCCCC-----CeecccCCCCCEEEEEEEeccccEEEEEecCCcEEEE
Confidence 32221 11222344566777766532 345667777766554
No 26
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=61.76 E-value=19 Score=23.10 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=22.2
Q ss_pred CCEEEEEecC-ceeEEEecCCcEEEe
Q 010683 72 IKICSVKAGG-MMSLAIDNAGALWMW 96 (504)
Q Consensus 72 ~~I~~Va~G~-~hs~alt~~G~v~~w 96 (504)
..+++|++|. ....+++.+|.||..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 5789999998 889999999999964
No 27
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=53.47 E-value=27 Score=22.35 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=20.7
Q ss_pred EEEEEEecC-CeeEEEecCCcEEEE
Q 010683 252 YLVSVDCGL-FHTSVVSSAGDVWSW 275 (504)
Q Consensus 252 ~i~~Ia~G~-~hs~~lt~~G~vy~w 275 (504)
.+++|++|. ....+++.+|.+|..
T Consensus 9 ~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 9 ELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CEEEEEECCCCeEEEEcCCCCEEEE
Confidence 589999999 777899999999863
No 28
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=53.07 E-value=3.4e+02 Score=32.46 Aligned_cols=68 Identities=24% Similarity=0.374 Sum_probs=41.5
Q ss_pred CEEEEEecCce-eEEE--ecCCcEEEecCCCCCCCCCCCCCcccccccceeecCCCCCeEEEE-EecCCeEEEE-EcCCC
Q 010683 73 KICSVKAGGMM-SLAI--DNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKV-ACGSEHVVAL-VSAGE 147 (504)
Q Consensus 73 ~I~~Va~G~~h-s~al--t~~G~v~~wG~n~~gGqlg~g~~~~~~~~~p~~v~~l~~~~I~~V-a~G~~hs~al-t~~G~ 147 (504)
.+.++++...| ++++ .+||.|-.|-.... .|.+ ... .-.......+.++..| .|++.+.+|+ ++||.
T Consensus 1050 ~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~---~~~~-~s~----rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1050 AVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKL---EGEG-GSA----RSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGS 1121 (1431)
T ss_pred cccceeecCCCCceEEEecCCceEEEeeehhh---hcCc-cee----eeeEEEeccCCceEEEEeccCCCeEEEEcCCCe
Confidence 45678888777 6776 47899999987554 2221 111 1122223355677777 4777777766 66775
Q ss_pred e
Q 010683 148 T 148 (504)
Q Consensus 148 v 148 (504)
|
T Consensus 1122 v 1122 (1431)
T KOG1240|consen 1122 V 1122 (1431)
T ss_pred E
Confidence 4
No 29
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=51.01 E-value=77 Score=30.09 Aligned_cols=28 Identities=14% Similarity=0.186 Sum_probs=24.6
Q ss_pred cEEEEeecCceEEEEecCCCCCCCCCCeEEEEecCC
Q 010683 191 AVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGE 226 (504)
Q Consensus 191 ~I~~Ia~G~~ht~~Lt~~G~~~~~~~~~vy~wG~n~ 226 (504)
++..+.|-.++.+++|.+|. +|+|--..
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~--------l~vWnl~~ 41 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGL--------LYVWNLKK 41 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCe--------EEEEECCC
Confidence 67889999999999999999 99997654
No 30
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=49.94 E-value=3.9e+02 Score=30.07 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=18.1
Q ss_pred eEEEEEEecCC----eeEEEecCCcEEE
Q 010683 251 VYLVSVDCGLF----HTSVVSSAGDVWS 274 (504)
Q Consensus 251 ~~i~~Ia~G~~----hs~~lt~~G~vy~ 274 (504)
..+..|+||.. .|++||..|.+.-
T Consensus 218 n~f~avaCg~gicAestfait~qGhLvE 245 (1080)
T KOG1408|consen 218 NEFLAVACGVGICAESTFAITAQGHLVE 245 (1080)
T ss_pred chhhhhhhcCcccccceEEEecccceee
Confidence 35788999987 8899998665443
No 31
>PF05924 SAMP: SAMP Motif; InterPro: IPR009224 This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). This motif binds axin [].; GO: 0008013 beta-catenin binding, 0016055 Wnt receptor signaling pathway; PDB: 1EMU_B 2RQU_B.
Probab=49.51 E-value=11 Score=21.32 Aligned_cols=12 Identities=42% Similarity=0.742 Sum_probs=9.3
Q ss_pred HHHHHhhccCCC
Q 010683 491 EIVNECLHSSTI 502 (504)
Q Consensus 491 ~~~~~~~~~~~~ 502 (504)
||++|||.|--+
T Consensus 4 eiL~~CI~sAmP 15 (20)
T PF05924_consen 4 EILQECIGSAMP 15 (20)
T ss_dssp HHHHHHHHCTS-
T ss_pred HHHHHHHHHhcc
Confidence 899999988654
No 32
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.58 E-value=3.8e+02 Score=32.23 Aligned_cols=225 Identities=15% Similarity=0.075 Sum_probs=0.0
Q ss_pred EecCCcEEEecCCCCCCCCCCCCCcccccccceeecCCCCCeEEEEEecCCeEEEEEcCCCeeecCCccEEEec-CCCCC
Q 010683 87 IDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWG-ANNNG 165 (504)
Q Consensus 87 lt~~G~v~~wG~n~~gGqlg~g~~~~~~~~~p~~v~~l~~~~I~~Va~G~~hs~alt~~G~vy~~~~~~ly~wG-~n~~G 165 (504)
+|.|.++|.|-.+.. +++-.-+.-...+..-..++.-+|.-+-.| .|.++|.+-= .++..| .-...
T Consensus 95 iTiDn~L~lWny~~~-~e~~~~d~~shtIl~V~LvkPkpgvFv~~I----qhlLvvaT~~--------ei~ilgV~~~~~ 161 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESD-NELAEYDGLSHTILKVGLVKPKPGVFVPEI----QHLLVVATPV--------EIVILGVSFDEF 161 (1311)
T ss_pred EEeCCeEEEEEcCCC-CccccccchhhhheeeeeecCCCCcchhhh----heeEEecccc--------eEEEEEEEeccc
Q ss_pred CCCCCCCCCcccceEEeecCCCCCCcEEEEeecCceEEEEe-cCCCCCCCCCCeEE----EEecCCCCC-----CCCCCC
Q 010683 166 QLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLT-HRKRPNDMLESMCW----TFGLGENGQ-----LGHGTT 235 (504)
Q Consensus 166 qLG~g~~~~~~~p~~v~~l~~~~~~~I~~Ia~G~~ht~~Lt-~~G~~~~~~~~~vy----~wG~n~~GQ-----LG~g~~ 235 (504)
+.+.+..... -.|..-.. .|..|++-.+-=++++ +||. || ..+++.+++ +=....
T Consensus 162 ~~~~~~f~~~---~~i~~dg~----~V~~I~~t~nGRIF~~G~dg~--------lyEl~Yq~~~gWf~~rc~Kiclt~s~ 226 (1311)
T KOG1900|consen 162 TGELSIFNTS---FKISVDGV----SVNCITYTENGRIFFAGRDGN--------LYELVYQAEDGWFGSRCRKICLTKSV 226 (1311)
T ss_pred cCcccccccc---eeeecCCc----eEEEEEeccCCcEEEeecCCC--------EEEEEEeccCchhhcccccccCchhH
Q ss_pred CceecceEeeec-CCceEEEEEEecCCeeE--EEecCCcEEEEeCCCCCCCCCCCCCCCCCCCCceeeEEeeCCCCCCCC
Q 010683 236 QSALVPEQVKEL-PQYVYLVSVDCGLFHTS--VVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPK 312 (504)
Q Consensus 236 ~~~~~p~~v~~l-~~~~~i~~Ia~G~~hs~--~lt~~G~vy~wG~n~~lG~~~~~~~~~~~~~~~~~P~~i~~~~~~~~~ 312 (504)
-....|..+... .....|.+|+.+....+ ++++.|.|=+|--.. -|+.+..............-.-+.. ......
T Consensus 227 ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~-~G~~~~r~~~~~~~~i~~qa~~~~~-~~~~s~ 304 (1311)
T KOG1900|consen 227 LSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG-NGLGGPRFVSVSRNYIDVQALSLKN-PLDDSV 304 (1311)
T ss_pred HHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC-CCccceeeeehhHHHHHHHhhhccc-cCCCcc
Q ss_pred CCCcEEEEecCc------eeEEEEcCCCeEEEEeC
Q 010683 313 FQDPVQVACGAA------HTVLVTDDGYKLWSWGR 341 (504)
Q Consensus 313 ~~~I~~I~~G~~------ht~~lt~~G~~vy~WG~ 341 (504)
+..|++|+.-.. |.+|+|..|-++|.=|.
T Consensus 305 f~~IvsI~~l~~~es~~l~LvA~ts~GvRlYfs~s 339 (1311)
T KOG1900|consen 305 FFSIVSISPLSASESNDLHLVAITSTGVRLYFSTS 339 (1311)
T ss_pred cceeEEecccCcccccceeEEEEecCCeEEEEecc
No 33
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=42.78 E-value=62 Score=19.89 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=21.0
Q ss_pred eEEEEEEecCCeeEEEecCCcEEEE
Q 010683 251 VYLVSVDCGLFHTSVVSSAGDVWSW 275 (504)
Q Consensus 251 ~~i~~Ia~G~~hs~~lt~~G~vy~w 275 (504)
+.|..|++|....++.|+.+-|-.|
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRif 26 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRIF 26 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEec
Confidence 4689999999999999998876543
No 34
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=40.95 E-value=5.2e+02 Score=28.44 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=15.6
Q ss_pred EEEecCceeEEEEcCCCeEEEEeC
Q 010683 318 QVACGAAHTVLVTDDGYKLWSWGR 341 (504)
Q Consensus 318 ~I~~G~~ht~~lt~~G~~vy~WG~ 341 (504)
.+.....+.-+..-++ ++|+-|-
T Consensus 508 ~m~~~rs~~g~~~~~~-~ly~vGG 530 (571)
T KOG4441|consen 508 PMTSPRSAVGVVVLGG-KLYAVGG 530 (571)
T ss_pred cCccccccccEEEECC-EEEEEec
Confidence 3555666665556677 8999886
No 35
>PRK05560 DNA gyrase subunit A; Validated
Probab=39.01 E-value=6.6e+02 Score=28.97 Aligned_cols=170 Identities=11% Similarity=0.005 Sum_probs=83.4
Q ss_pred CCEEEE--EecCceeEEEecCCcEEEecCCCCCCCCCCCCCcccccccceeecCCCCCeEEEEEecC-----CeEEEEEc
Q 010683 72 IKICSV--KAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGS-----EHVVALVS 144 (504)
Q Consensus 72 ~~I~~V--a~G~~hs~alt~~G~v~~wG~n~~gGqlg~g~~~~~~~~~p~~v~~l~~~~I~~Va~G~-----~hs~alt~ 144 (504)
..+..+ +....+.+++|+.|++|..-...-+ ..+..... .+....+....+++|+.+.+-. ...+++|.
T Consensus 537 D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP-~~~~~~~G---~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk 612 (805)
T PRK05560 537 DFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIP-EASRTARG---RPIVNLLPLEPGEKITAILPVREFDDDKYLFFATK 612 (805)
T ss_pred CeeEEEEEecCCCeEEEEecCCeEEEEEhhhCc-CCCcCCCC---eEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeC
Confidence 344443 3446678889999999998765431 11110000 0000112234567888887654 35778899
Q ss_pred CCCeeecCCccEEEecCCCCCCCCCCCCCCcccceEEeecCCCCCCcEEEEe--ecCceEEEEecCCCCCCCCCCeEEEE
Q 010683 145 AGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVT--CGSFHTALLTHRKRPNDMLESMCWTF 222 (504)
Q Consensus 145 ~G~vy~~~~~~ly~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~~~~I~~Ia--~G~~ht~~Lt~~G~~~~~~~~~vy~w 222 (504)
+|.+. ---.+.+-....+ ......+.... .++.+. ....+.+++|++|+ +|.+
T Consensus 613 ~GyiK--------Ri~l~~~~~~~r~-------G~~~ikLke~D--~lv~v~~~~~~d~lll~T~~Gr--------~~r~ 667 (805)
T PRK05560 613 NGTVK--------KTSLSEFSNIRSN-------GIIAINLDEGD--ELIGVRLTDGDDDILLATKNGK--------AIRF 667 (805)
T ss_pred CCEEE--------EEEhHHhhhcccC-------CceeeccCCCC--EEEEEEEeCCCCEEEEEECCCc--------EEEE
Confidence 98431 1111111000000 01111111111 344333 34456899999999 8887
Q ss_pred ecCCCCCCCCCCCCceecceEeeecCCceEEEEEEecCC---eeEEEecCCcEEEE
Q 010683 223 GLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLF---HTSVVSSAGDVWSW 275 (504)
Q Consensus 223 G~n~~GQLG~g~~~~~~~p~~v~~l~~~~~i~~Ia~G~~---hs~~lt~~G~vy~w 275 (504)
=...--..|... ...++..|..+.+|+.+.+... +.+++|+.|.+.-.
T Consensus 668 ~~~eIp~~gr~~-----~Gv~~i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~ 718 (805)
T PRK05560 668 PESDVRPMGRTA-----RGVRGIKLREGDEVVSMDVVREDSQEILTVTENGYGKRT 718 (805)
T ss_pred EhhhcCccCccc-----CCcccccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEE
Confidence 654432222211 1222233455667777765432 45667777765544
No 36
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=38.02 E-value=3.8e+02 Score=30.44 Aligned_cols=79 Identities=22% Similarity=0.263 Sum_probs=46.2
Q ss_pred CeEEEEEecCC-eEEEEEcCCCeeecCCccEEE---ecCCCCCCCCCCCCCCcccceEEeecCCCCCCcEEEEe-----e
Q 010683 127 HTVVKVACGSE-HVVALVSAGETYKGEDLVCYS---WGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVT-----C 197 (504)
Q Consensus 127 ~~I~~Va~G~~-hs~alt~~G~vy~~~~~~ly~---wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~~~~I~~Ia-----~ 197 (504)
..|..|..... +.+||.-.-.|. .++- ||.+.+-+.|-.....+..|.--..+.......|.++. .
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~-----V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~ 159 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVV-----VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSE 159 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEE-----EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCC
Confidence 46777776554 334554444443 2333 88776655554444444444443344444444677774 4
Q ss_pred cCceEEEEecCCC
Q 010683 198 GSFHTALLTHRKR 210 (504)
Q Consensus 198 G~~ht~~Lt~~G~ 210 (504)
...|-++||+|+.
T Consensus 160 ~~~~l~vLtsdn~ 172 (717)
T PF10168_consen 160 SDSHLVVLTSDNT 172 (717)
T ss_pred CCCeEEEEecCCE
Confidence 5789999999986
No 37
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=37.62 E-value=35 Score=22.61 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=15.6
Q ss_pred CeeEEEecCCcEEEEeCCC
Q 010683 261 FHTSVVSSAGDVWSWGMEK 279 (504)
Q Consensus 261 ~hs~~lt~~G~vy~wG~n~ 279 (504)
-+.++++.+|.||+.|.-.
T Consensus 15 ~~~IavD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 15 GNGIAVDSNGNIYVTGYTN 33 (38)
T ss_pred EEEEEECCCCCEEEEEeec
Confidence 3568899999999999743
No 38
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=37.47 E-value=56 Score=39.76 Aligned_cols=103 Identities=9% Similarity=0.083 Sum_probs=63.8
Q ss_pred ccceeeEEEcCCCce-ecCCCCcccceeeehhhccCCCCCCCCccccCCCCCCCEEEEEecCcee-EEEecCCcEEEecC
Q 010683 21 FICYTSLNCCMDGQL-GFSGSNSLVPCVIEQFLTIGAPDSLEDDSKTNHKAPIKICSVKAGGMMS-LAIDNAGALWMWGN 98 (504)
Q Consensus 21 ~G~~h~~~l~~~Gql-G~~~~~~~~p~~i~~~~~l~~~~~~~~~~~~~~~~~~~I~~Va~G~~hs-~alt~~G~v~~wG~ 98 (504)
.+..+.+++++.|+| -+...+. |..+.. ....-.|++++.-..|. +|++.+|+||..-.
T Consensus 711 v~~~~fvald~qg~lt~h~k~g~--p~~l~~-----------------~gl~G~ik~l~lD~~~nL~Alt~~G~Lf~~~k 771 (1774)
T PF11725_consen 711 VNDNKFVALDDQGDLTAHQKPGR--PVPLSR-----------------PGLSGEIKDLALDEKQNLYALTSTGELFRLPK 771 (1774)
T ss_pred EcCCceEEeccCCccccccCCCC--CccCCC-----------------CCCCcchhheeeccccceeEecCCCceeecCH
Confidence 456788888999998 2332222 333321 11246799999997755 78999999998765
Q ss_pred CCCCCCCCCCCCcccccccceeecCCCCCeEEEEEecCCeEEEEEcCC
Q 010683 99 CPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAG 146 (504)
Q Consensus 99 n~~gGqlg~g~~~~~~~~~p~~v~~l~~~~I~~Va~G~~hs~alt~~G 146 (504)
-.. |-+...........|+.++ .+.+|..+....+|.+.+.-++
T Consensus 772 ~~W--Q~~~~~~~~~~~W~~v~lP--~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 772 EAW--QGNAEGDQMAAKWQKVALP--DEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred HHh--hCcccCCccccCceeccCC--CCCchhhhhcCCCCceEEEecC
Confidence 443 2222221122344444443 4567888888888888776555
No 39
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=37.43 E-value=1.8e+02 Score=30.63 Aligned_cols=83 Identities=17% Similarity=0.078 Sum_probs=47.5
Q ss_pred EEecccceeeEEEcCCCceecCCCCcccceeeehhhccCCCCCCCCccccCCCCCCCEEEEEecCceeEEEecCCcEEEe
Q 010683 17 FFMPFICYTSLNCCMDGQLGFSGSNSLVPCVIEQFLTIGAPDSLEDDSKTNHKAPIKICSVKAGGMMSLAIDNAGALWMW 96 (504)
Q Consensus 17 ~~ia~G~~h~~~l~~~GqlG~~~~~~~~p~~i~~~~~l~~~~~~~~~~~~~~~~~~~I~~Va~G~~hs~alt~~G~v~~w 96 (504)
+...+-.-+.++++.+|+|+.|+-++. .-+..|.+=| +=..-++++.-+|..++.
T Consensus 350 ~~fsSdsk~l~~~~~~GeV~v~nl~~~--~~~~rf~D~G-----------------------~v~gts~~~S~ng~ylA~ 404 (514)
T KOG2055|consen 350 FTFSSDSKELLASGGTGEVYVWNLRQN--SCLHRFVDDG-----------------------SVHGTSLCISLNGSYLAT 404 (514)
T ss_pred EEEecCCcEEEEEcCCceEEEEecCCc--ceEEEEeecC-----------------------ccceeeeeecCCCceEEe
Confidence 334455588999999999999975543 2222221111 114456777788999999
Q ss_pred cCCCCCCCCCCCC-CcccccccceeecCCCC
Q 010683 97 GNCPLPDSSTEGG-FSLVSSFTPSPVWDFHG 126 (504)
Q Consensus 97 G~n~~gGqlg~g~-~~~~~~~~p~~v~~l~~ 126 (504)
|++.- ....-+ .+......|.|+..+.+
T Consensus 405 GS~~G--iVNIYd~~s~~~s~~PkPik~~dN 433 (514)
T KOG2055|consen 405 GSDSG--IVNIYDGNSCFASTNPKPIKTVDN 433 (514)
T ss_pred ccCcc--eEEEeccchhhccCCCCchhhhhh
Confidence 97552 221111 12234556777766543
No 40
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=37.18 E-value=4.1e+02 Score=25.98 Aligned_cols=28 Identities=14% Similarity=0.261 Sum_probs=18.1
Q ss_pred cEEEEeecCceE--EEEecCCCCCCCCCCeEEEEecCC
Q 010683 191 AVYEVTCGSFHT--ALLTHRKRPNDMLESMCWTFGLGE 226 (504)
Q Consensus 191 ~I~~Ia~G~~ht--~~Lt~~G~~~~~~~~~vy~wG~n~ 226 (504)
.|.+++...+-+ ++.+..|+ +|+|-.-.
T Consensus 169 ~i~sl~v~~dgsml~a~nnkG~--------cyvW~l~~ 198 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAANNKGN--------CYVWRLLN 198 (311)
T ss_pred ceeeEEEcCCCcEEEEecCCcc--------EEEEEccC
Confidence 466666665554 45566666 99998643
No 41
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=34.19 E-value=8.3e+02 Score=28.71 Aligned_cols=30 Identities=13% Similarity=0.098 Sum_probs=23.8
Q ss_pred CCCCEEEEEecCce--eEEEecCCcEEEecCC
Q 010683 70 APIKICSVKAGGMM--SLAIDNAGALWMWGNC 99 (504)
Q Consensus 70 ~~~~I~~Va~G~~h--s~alt~~G~v~~wG~n 99 (504)
.+..|.+|+.+..+ .++++.||.|..|-..
T Consensus 425 ~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~ 456 (928)
T PF04762_consen 425 LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWD 456 (928)
T ss_pred CCCCcEEEEEeCCCCeEEEEECCCCEEEEEec
Confidence 45678999998777 7999999987777643
No 42
>PLN02153 epithiospecifier protein
Probab=32.99 E-value=5.2e+02 Score=25.93 Aligned_cols=18 Identities=17% Similarity=0.486 Sum_probs=12.8
Q ss_pred ceeEEEecCCcEEEecCCC
Q 010683 82 MMSLAIDNAGALWMWGNCP 100 (504)
Q Consensus 82 ~hs~alt~~G~v~~wG~n~ 100 (504)
.|++++ .++++|++|-..
T Consensus 130 ~~~~~~-~~~~iyv~GG~~ 147 (341)
T PLN02153 130 FHSMAS-DENHVYVFGGVS 147 (341)
T ss_pred eeEEEE-ECCEEEEECCcc
Confidence 566665 467899999643
No 43
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=32.82 E-value=54 Score=28.09 Aligned_cols=36 Identities=25% Similarity=0.494 Sum_probs=29.4
Q ss_pred HhhhccCchhhHH--HHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Q 010683 456 NMLESADRSKLVR--LERFYRNMLAGVKDKLMKRRIQEIVNECLH 498 (504)
Q Consensus 456 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (504)
..++++|..+|+| ++.||+.++.- +.|.+|++.|+.
T Consensus 58 ~l~~~~d~~~LT~~Qi~Yl~~~~~~n-------~~I~~Il~~~vd 95 (122)
T PF06648_consen 58 NLFGAVDGLKLTRSQIDYLYNRVYNN-------RYIINILQKFVD 95 (122)
T ss_pred HHHhcccHhhcCHHHHHHHHHHHHcc-------HHHHHHHHHHhc
Confidence 4567999899999 99999988765 778888888765
No 44
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=31.78 E-value=4.6e+02 Score=26.11 Aligned_cols=141 Identities=18% Similarity=0.213 Sum_probs=73.6
Q ss_pred ecCceeEEEecCCcEEEecCCCCCCCCCCCCCcccccccceeecCCCCCeEEEEEecC---CeEEEEEcCCCeeecCCcc
Q 010683 79 AGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGS---EHVVALVSAGETYKGEDLV 155 (504)
Q Consensus 79 ~G~~hs~alt~~G~v~~wG~n~~gGqlg~g~~~~~~~~~p~~v~~l~~~~I~~Va~G~---~hs~alt~~G~vy~~~~~~ 155 (504)
-+.-|.++...||.||.-+.... .+|.-+ |. .-+++.+..|. -|.+++..||.
T Consensus 61 G~ap~dvapapdG~VWft~qg~g--aiGhLd--------P~------tGev~~ypLg~Ga~Phgiv~gpdg~-------- 116 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGTG--AIGHLD--------PA------TGEVETYPLGSGASPHGIVVGPDGS-------- 116 (353)
T ss_pred CCCccccccCCCCceEEecCccc--cceecC--------CC------CCceEEEecCCCCCCceEEECCCCC--------
Confidence 34668889999999998776443 333221 10 11344444333 27777777774
Q ss_pred EEEecC-CCCCCCCCCCCCCcccceEEeecCCCCCCcEEEEeecCceEEEEecCCCCCCCCCCeEEEEecC-CCCCCCCC
Q 010683 156 CYSWGA-NNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLG-ENGQLGHG 233 (504)
Q Consensus 156 ly~wG~-n~~GqLG~g~~~~~~~p~~v~~l~~~~~~~I~~Ia~G~~ht~~Lt~~G~~~~~~~~~vy~wG~n-~~GQLG~g 233 (504)
.|..-. +..+.++-...+ .+. +.- -.+-+-++-.+.+++..|+ ||.-|.+ .+|.|.-.
T Consensus 117 ~Witd~~~aI~R~dpkt~e----vt~---f~l-----p~~~a~~nlet~vfD~~G~--------lWFt~q~G~yGrLdPa 176 (353)
T COG4257 117 AWITDTGLAIGRLDPKTLE----VTR---FPL-----PLEHADANLETAVFDPWGN--------LWFTGQIGAYGRLDPA 176 (353)
T ss_pred eeEecCcceeEEecCcccc----eEE---eec-----ccccCCCcccceeeCCCcc--------EEEeeccccceecCcc
Confidence 343321 122222211111 111 110 1233445566888999998 9988864 44555322
Q ss_pred CCCceecceEeeecCCceEEEEEEecCCeeEEEecCCcEEEEe
Q 010683 234 TTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWG 276 (504)
Q Consensus 234 ~~~~~~~p~~v~~l~~~~~i~~Ia~G~~hs~~lt~~G~vy~wG 276 (504)
...-...|.+ ..+.-.-++.|-||+||.--
T Consensus 177 ~~~i~vfpaP-------------qG~gpyGi~atpdGsvwyas 206 (353)
T COG4257 177 RNVISVFPAP-------------QGGGPYGICATPDGSVWYAS 206 (353)
T ss_pred cCceeeeccC-------------CCCCCcceEECCCCcEEEEe
Confidence 1111111211 12445567899999999864
No 45
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=31.06 E-value=1.1e+02 Score=32.36 Aligned_cols=37 Identities=14% Similarity=-0.033 Sum_probs=27.8
Q ss_pred ceeeEEEEEeeeeEEEecccceeeEEEcCCCceecCCC
Q 010683 3 LQHYYYHYYLCFTCFFMPFICYTSLNCCMDGQLGFSGS 40 (504)
Q Consensus 3 ~~~~~~~~~~~~~i~~ia~G~~h~~~l~~~GqlG~~~~ 40 (504)
+|-|..|+=.-..|.++..|+.+....+ ++.+=.|..
T Consensus 335 vqeYd~hLg~i~~i~F~~~g~rFissSD-dks~riWe~ 371 (503)
T KOG0282|consen 335 VQEYDRHLGAILDITFVDEGRRFISSSD-DKSVRIWEN 371 (503)
T ss_pred HHHHHhhhhheeeeEEccCCceEeeecc-CccEEEEEc
Confidence 4667788888888999999988887755 667755543
No 46
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=30.60 E-value=3.7e+02 Score=26.69 Aligned_cols=104 Identities=12% Similarity=0.080 Sum_probs=60.7
Q ss_pred cccceeeEEEcCCCceecCCCCcccceeeehhhccCCCCCCCCccccCCCCCCCEEEEEec---CceeEEEecCCcEEEe
Q 010683 20 PFICYTSLNCCMDGQLGFSGSNSLVPCVIEQFLTIGAPDSLEDDSKTNHKAPIKICSVKAG---GMMSLAIDNAGALWMW 96 (504)
Q Consensus 20 a~G~~h~~~l~~~GqlG~~~~~~~~p~~i~~~~~l~~~~~~~~~~~~~~~~~~~I~~Va~G---~~hs~alt~~G~v~~w 96 (504)
..+.-|-++...||.|++++++...- ..|+ +..-+++.+..| .-|.+++..||..|.+
T Consensus 60 ~G~ap~dvapapdG~VWft~qg~gai------GhLd-------------P~tGev~~ypLg~Ga~Phgiv~gpdg~~Wit 120 (353)
T COG4257 60 NGSAPFDVAPAPDGAVWFTAQGTGAI------GHLD-------------PATGEVETYPLGSGASPHGIVVGPDGSAWIT 120 (353)
T ss_pred CCCCccccccCCCCceEEecCccccc------eecC-------------CCCCceEEEecCCCCCCceEEECCCCCeeEe
Confidence 34556889999999999887665421 1111 113456666666 4589999999999998
Q ss_pred cCCCCCCCCCCCCCcccccccceeecCCCCCeEEEEEecCCeEEEEEcCCCeeecCCccEEEecC
Q 010683 97 GNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGA 161 (504)
Q Consensus 97 G~n~~gGqlg~g~~~~~~~~~p~~v~~l~~~~I~~Va~G~~hs~alt~~G~vy~~~~~~ly~wG~ 161 (504)
-...--+.++...... ..-|.+ .+.+-++-.+.+++.+| +||.-|.
T Consensus 121 d~~~aI~R~dpkt~ev--t~f~lp---------~~~a~~nlet~vfD~~G--------~lWFt~q 166 (353)
T COG4257 121 DTGLAIGRLDPKTLEV--TRFPLP---------LEHADANLETAVFDPWG--------NLWFTGQ 166 (353)
T ss_pred cCcceeEEecCcccce--EEeecc---------cccCCCcccceeeCCCc--------cEEEeec
Confidence 7642101121111111 111222 22333555788899999 5676665
No 47
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=28.89 E-value=5.5e+02 Score=25.00 Aligned_cols=50 Identities=16% Similarity=0.294 Sum_probs=30.0
Q ss_pred CCCeEEEEEecCCeEEEEEcCCCeeecCCccEEEecCCCCCC-CCCCCCCCcccceEEee
Q 010683 125 HGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQ-LGLGDRESRLRPKIIET 183 (504)
Q Consensus 125 ~~~~I~~Va~G~~hs~alt~~G~vy~~~~~~ly~wG~n~~Gq-LG~g~~~~~~~p~~v~~ 183 (504)
.+.+|-+++.-..|-+. .-|| .+|+|-+|..-. ++....-....|..+..
T Consensus 61 hdgpiy~~~f~d~~Lls-~gdG--------~V~gw~W~E~~es~~~K~lwe~~~P~~~~~ 111 (325)
T KOG0649|consen 61 HDGPIYYLAFHDDFLLS-GGDG--------LVYGWEWNEEEESLATKRLWEVKIPMQVDA 111 (325)
T ss_pred cCCCeeeeeeehhheee-ccCc--------eEEEeeehhhhhhccchhhhhhcCccccCc
Confidence 34467777766554432 2345 679999987766 55555445556666543
No 48
>PHA03098 kelch-like protein; Provisional
Probab=27.73 E-value=7.9e+02 Score=26.39 Aligned_cols=17 Identities=6% Similarity=0.204 Sum_probs=11.6
Q ss_pred ceeEEEecCCcEEEecCC
Q 010683 82 MMSLAIDNAGALWMWGNC 99 (504)
Q Consensus 82 ~hs~alt~~G~v~~wG~n 99 (504)
.|+++. -+|.||++|..
T Consensus 335 ~~~~~~-~~~~lyv~GG~ 351 (534)
T PHA03098 335 NPGVTV-FNNRIYVIGGI 351 (534)
T ss_pred cceEEE-ECCEEEEEeCC
Confidence 355544 47899999954
No 49
>PF07340 Herpes_IE1: Cytomegalovirus IE1 protein; InterPro: IPR010855 Expression from a human cytomegalovirus early promoter (E1.7) has been shown to be activated in trans by the IE2 gene product. Although the IE1 gene product alone had no effect on this early viral promoter, maximal early promoter activity was detected when both IE1 and IE2 gene products were present []. The IE1 protein from cytomegalovirus is also known as UL123.; GO: 0050792 regulation of viral reproduction, 0042025 host cell nucleus
Probab=25.51 E-value=49 Score=33.73 Aligned_cols=17 Identities=47% Similarity=0.706 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhhcc
Q 010683 483 KLMKRRIQEIVNECLHS 499 (504)
Q Consensus 483 ~~~~~~~~~~~~~~~~~ 499 (504)
++|++||++|++||+..
T Consensus 338 ~~M~~Ki~~I~~e~~a~ 354 (392)
T PF07340_consen 338 KIMKPKIRAIVNEMFAK 354 (392)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57999999999998753
No 50
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=24.63 E-value=65 Score=22.01 Aligned_cols=19 Identities=16% Similarity=0.323 Sum_probs=12.3
Q ss_pred CCeeEEEecCCcEEEEeCC
Q 010683 260 LFHTSVVSSAGDVWSWGME 278 (504)
Q Consensus 260 ~~hs~~lt~~G~vy~wG~n 278 (504)
..|+++...+++||++|-.
T Consensus 3 ~~h~~~~~~~~~i~v~GG~ 21 (49)
T PF13418_consen 3 YGHSAVSIGDNSIYVFGGR 21 (49)
T ss_dssp BS-EEEEE-TTEEEEE--E
T ss_pred ceEEEEEEeCCeEEEECCC
Confidence 3688888888999999943
No 51
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=24.58 E-value=1.1e+03 Score=27.19 Aligned_cols=76 Identities=17% Similarity=0.078 Sum_probs=53.6
Q ss_pred ceeeEEEEEeeeeEEEecccceeeEEEcCCCceecCCCCcc--cceeeehhhccCCCCCCCCccccCCCCCCCEEEEEec
Q 010683 3 LQHYYYHYYLCFTCFFMPFICYTSLNCCMDGQLGFSGSNSL--VPCVIEQFLTIGAPDSLEDDSKTNHKAPIKICSVKAG 80 (504)
Q Consensus 3 ~~~~~~~~~~~~~i~~ia~G~~h~~~l~~~GqlG~~~~~~~--~p~~i~~~~~l~~~~~~~~~~~~~~~~~~~I~~Va~G 80 (504)
+..+|.|.-..-++..-+.|. +.+.+++||.+-.|..+.. .|..+.. .+..|..|++-
T Consensus 6 ~klRyaht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~ti~~-------------------~g~~v~~ia~~ 65 (933)
T KOG1274|consen 6 LKLRYAHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPETIDI-------------------SGELVSSIACY 65 (933)
T ss_pred ccchhhccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCchhhc-------------------cCceeEEEeec
Confidence 455677877767777777777 8888899998866654432 3333331 35779999999
Q ss_pred CceeEEEecCCcE--EEecC
Q 010683 81 GMMSLAIDNAGAL--WMWGN 98 (504)
Q Consensus 81 ~~hs~alt~~G~v--~~wG~ 98 (504)
..|.+.-++++.| |.+++
T Consensus 66 s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 66 SNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred ccceEEeeccceEEEeeCCC
Confidence 9999999888865 44444
No 52
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=24.27 E-value=1.1e+02 Score=18.47 Aligned_cols=19 Identities=16% Similarity=0.337 Sum_probs=14.8
Q ss_pred eeEEEecCCcEEEecCCCC
Q 010683 83 MSLAIDNAGALWMWGNCPL 101 (504)
Q Consensus 83 hs~alt~~G~v~~wG~n~~ 101 (504)
|.++++.+|+||+.-.+..
T Consensus 5 ~gvav~~~g~i~VaD~~n~ 23 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGNH 23 (28)
T ss_dssp EEEEEETTSEEEEEECCCT
T ss_pred cEEEEeCCCCEEEEECCCC
Confidence 6788889999998876543
No 53
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=23.77 E-value=7.9e+02 Score=25.07 Aligned_cols=14 Identities=21% Similarity=0.005 Sum_probs=10.2
Q ss_pred EEecCCcEEEEeCC
Q 010683 265 VVSSAGDVWSWGME 278 (504)
Q Consensus 265 ~lt~~G~vy~wG~n 278 (504)
+...+|+||++|-.
T Consensus 275 a~~~~~~iyv~GG~ 288 (376)
T PRK14131 275 AGYSNGVLLVAGGA 288 (376)
T ss_pred ceeECCEEEEeecc
Confidence 34467899999853
No 54
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=23.69 E-value=1.6e+02 Score=28.94 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=17.0
Q ss_pred CCeeEEEecCCcEEEEeC-CCCCCCCC
Q 010683 260 LFHTSVVSSAGDVWSWGM-EKGLGLCP 285 (504)
Q Consensus 260 ~~hs~~lt~~G~vy~wG~-n~~lG~~~ 285 (504)
+.||++.- ++++|.||- |+..|.|.
T Consensus 80 YGHtvV~y-~d~~yvWGGRND~egaCN 105 (392)
T KOG4693|consen 80 YGHTVVEY-QDKAYVWGGRNDDEGACN 105 (392)
T ss_pred cCceEEEE-cceEEEEcCccCcccccc
Confidence 56776654 679999985 55566654
No 55
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.36 E-value=1.6e+02 Score=34.26 Aligned_cols=32 Identities=22% Similarity=0.588 Sum_probs=22.3
Q ss_pred cEEEE-ecCceeEEEE--cCCCeEEEEeCCCCCCCC
Q 010683 316 PVQVA-CGAAHTVLVT--DDGYKLWSWGRGRSGVLG 348 (504)
Q Consensus 316 I~~I~-~G~~ht~~lt--~~G~~vy~WG~n~~GqLG 348 (504)
|+.++ |..+-.++|+ +|+ ++++|+-|+--+||
T Consensus 256 ilslsWc~~D~~lllSsgkD~-~ii~wN~~tgEvl~ 290 (1049)
T KOG0307|consen 256 ILSLSWCPQDPRLLLSSGKDN-RIICWNPNTGEVLG 290 (1049)
T ss_pred eeeeccCCCCchhhhcccCCC-CeeEecCCCceEee
Confidence 55554 6666455555 577 99999999866665
Done!