BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010684
(504 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 477 bits (1228), Expect = e-135, Method: Compositional matrix adjust.
Identities = 236/486 (48%), Positives = 323/486 (66%), Gaps = 11/486 (2%)
Query: 7 ACSKVHAVCIPSPFQSHIXXXXXXXXXXXXXGFHITFVNTEFNHRRLLKARGQHSLDGLP 66
A K H V IP P Q HI GFHITFVNTE+NH+RLLK+RG + DG
Sbjct: 5 ANRKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFT 64
Query: 67 SFRFEAIPDGLPASSDESPTAQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSC 126
F FE+IPDGL + +QD +L +++ N L P+ +LL +LN S+N P V+C
Sbjct: 65 DFNFESIPDGLTPMEGDGDVSQDVPTLCQSVRKN-FLKPYCELLTRLNHSTNV--PPVTC 121
Query: 127 IISDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTFKEKGLFPVKVLADKSCLTK 186
++SD + FTI AA++ LP VL+F+ SACS + F++F E+G+ P K D+S LT
Sbjct: 122 LVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFK---DESYLTN 178
Query: 187 EYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALE 246
L + +DWIPG+K+ R++D+ FI++T+P D+M +E + +K + I+++TF+ LE
Sbjct: 179 GCLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELE 238
Query: 247 QQVLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKS 306
V+NALS P ++ IGPL LL QT Q L+S+ NL KE+TECL WL+ KEP S
Sbjct: 239 SDVINALSSTIPS-IYPIGPLPSLLKQTP-QIHQLDSLDSNLWKEDTECLDWLESKEPGS 296
Query: 307 VIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGF 366
V+YVNFGS M +QL+E A GL N FLWIIRPDLV G + +EF + ++G
Sbjct: 297 VVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNEIADRGL 356
Query: 367 VASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGV 426
+ASWCPQ++VL HPSIGGFLTHCGWNS ES+C+GVPM+CWPF DQPT+ R++CNEW +
Sbjct: 357 IASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEI 416
Query: 427 GMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKL 486
GMEI D +V R E+ KL+ E++ G+KGK+M+ KAME K AEE P G S +NL+K+
Sbjct: 417 GMEI---DTNVKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNKV 473
Query: 487 VNEILL 492
+ ++LL
Sbjct: 474 IKDVLL 479
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 179 bits (453), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 111/366 (30%), Positives = 179/366 (48%), Gaps = 31/366 (8%)
Query: 124 VSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTFKEK-GLFPVKVLADKS 182
VSC+++D F+ F A ++G+ + F+T S +EK G+ ++ D+
Sbjct: 113 VSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGREDE- 171
Query: 183 CLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTF 242
L+++IPGM +R RDL I + + + + KA+A+ I++F
Sbjct: 172 ---------LLNFIPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSF 222
Query: 243 DALEQQVLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCK 302
+ L+ + N L +L IGP L+ ++ T CLQWL +
Sbjct: 223 EELDDSLTNDLKSKLKTYL-NIGPFNLITPPP-------------VVPNTTGCLQWLKER 268
Query: 303 EPKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAK 362
+P SV+Y++FG+ +++ ++ L S PF+W +R LP F K +
Sbjct: 269 KPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDK----ARVHLPEGFLEKTR 324
Query: 363 EKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCN 422
G V W PQ EVL H ++G F+THCGWNS+ ES+ GVP+IC PF GDQ NGR V +
Sbjct: 325 GYGMVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVED 384
Query: 423 EWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLN 482
+G+ I G ++ + +++ EKGK++R + A+ A P GSS+ N
Sbjct: 385 VLEIGVRIEGG--VFTKSGLMSCFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTEN 442
Query: 483 LDKLVN 488
LV+
Sbjct: 443 FITLVD 448
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 124/390 (31%), Positives = 185/390 (47%), Gaps = 42/390 (10%)
Query: 110 LAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTFKE 169
L K+ DS + ++ D F A + +P +F+ +A F E
Sbjct: 97 LRKVFDSFVEGGRLPTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDE 156
Query: 170 KGLFPVKVLADKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATE 229
SC +E L+ +PG + +D + D KD + + T+
Sbjct: 157 T----------VSCEFRELTEPLM--LPGCVPVAGKDF--LDPAQDRKDDAYKWLLHNTK 202
Query: 230 NASKASAIIIHTFDALEQQVLNALS--FMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYN 287
+A I+++TF LE + AL + ++ +GPL + Q +Q
Sbjct: 203 RYKEAEGILVNTFFELEPNAIKALQEPGLDKPPVYPVGPLVNIGKQEAKQ---------- 252
Query: 288 LLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIR-PDLV 346
EE+ECL+WLD + SV+YV+FGS + +QL E+A+GL +S FLW+IR P +
Sbjct: 253 --TEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGI 310
Query: 347 -----------TGETADLPAEFEVKAKEKGFVAS-WCPQEEVLKHPSIGGFLTHCGWNSI 394
T LP F + K++GFV W PQ +VL HPS GGFLTHCGWNS
Sbjct: 311 ANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNST 370
Query: 395 VESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEIN-GDDEDVIRNEVEKLVREMMEGE 453
+ES+ SG+P+I WP +Q N + + + GDD V R EV ++V+ +MEGE
Sbjct: 371 LESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVKGLMEGE 430
Query: 454 KGKQMRNKAMEWKGLAEEAAAPHGSSSLNL 483
+GK +RNK E K A G+S+ L
Sbjct: 431 EGKGVRNKMKELKEAACRVLKDDGTSTKAL 460
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 118/427 (27%), Positives = 195/427 (45%), Gaps = 47/427 (11%)
Query: 65 LPSFRFEAIPDGLPASSDESPTAQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAV 124
LP+ ++ + DGLP S ++ L + H + +A+ + +
Sbjct: 66 LPNIKYYNVHDGLPKGYVSSGNPREPIFLFIKAMQENFKHVIDEAVAETGKN-------I 118
Query: 125 SCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTFKEKGLFPVKVLADKSCL 184
+C+++D F F A+++ V +T S + +EK
Sbjct: 119 TCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREK------------TG 166
Query: 185 TKEYLN-SLIDWIPGMKDIRIRDLP-SFIQSTDP--KDMMFNLCVEATENASKASAIIIH 240
+KE + ID +PG +++ DLP I+ D M+ + +E +A+A+ I+
Sbjct: 167 SKEVHDVKSIDVLPGFPELKASDLPEGVIKDIDVPFATMLHKMGLEL----PRANAVAIN 222
Query: 241 TFDALEQQVLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLD 300
+F + + N L+ F L +GP L Q + D E CL+WLD
Sbjct: 223 SFATIHPLIENELNSKF-KLLLNVGPFNLTTPQRKVSD-------------EHGCLEWLD 268
Query: 301 CKEPKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVK 360
E SV+Y++FGS + +L +A L PF+W R D LP F +
Sbjct: 269 QHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGD----PKEKLPKGFLER 324
Query: 361 AKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYV 420
K KG + +W PQ E+LKH S+G FLTH GWNS++E + GVPMI PF GDQ N +
Sbjct: 325 TKTKGKIVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLN--TI 382
Query: 421 CNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSS 480
E + + + D+ + + ++K + M EKG MR K ++ K A +A +G+S+
Sbjct: 383 LTESVLEIGVGVDNGVLTKESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTSA 442
Query: 481 LNLDKLV 487
++ L+
Sbjct: 443 MDFTTLI 449
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 146 bits (368), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 117/386 (30%), Positives = 190/386 (49%), Gaps = 50/386 (12%)
Query: 124 VSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQ-TFKEKGLFPVKVLADKS 182
V ++ D F I + G+P LF T S +GF + K + ++ + D S
Sbjct: 115 VVGLVLDFFCVSMIDVGNEFGIPSYLFLT----SNVGFLSLMLSLKNR---QIEEVFDDS 167
Query: 183 CLTKEYLNSLIDWIPGMKDIRIRDLPSFI--QSTDPKDMMFNLCVEATENASKASAIIIH 240
+ LN IPG+ + +PS + + KD + + E II++
Sbjct: 168 DRDHQLLN-----IPGISN----QVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVN 218
Query: 241 TFDALEQQVLNALSFMFPHH-----LFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETEC 295
TF LEQ ++AL + H ++ +GPL L Q + L+ ++L+
Sbjct: 219 TFSDLEQSSIDAL---YDHDEKIPPIYAVGPLLDLKGQPNPK---LDQAQHDLI------ 266
Query: 296 LQWLDCKEPKSVIYVNFGSF-IFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLP 354
L+WLD + KSV+++ FGS + Q+ E+A+GL +S FLW + E P
Sbjct: 267 LKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWS-----NSAEKKVFP 321
Query: 355 AEFE--VKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGD 412
F ++ + KG + W PQ EVL H +IGGF++HCGWNSI+ES+ GVP++ WP +
Sbjct: 322 EGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAE 381
Query: 413 QPTNGRYVCNEWGVGMEINGD----DEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGL 468
Q N + EWGVG+ + D + V E+EK ++++M +K + K E K +
Sbjct: 382 QQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLM--DKDSIVHKKVQEMKEM 439
Query: 469 AEEAAAPHGSSSLNLDKLVNEILLSN 494
+ A GSS +++ KL+++I SN
Sbjct: 440 SRNAVVDGGSSLISVGKLIDDITGSN 465
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 115/382 (30%), Positives = 188/382 (49%), Gaps = 50/382 (13%)
Query: 124 VSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQ-TFKEKGLFPVKVLADKS 182
V ++ D F I + G+P LF T S +GF + K + ++ + D S
Sbjct: 115 VVGLVLDFFCVSMIDVGNEFGIPSYLFLT----SNVGFLSLMLSLKNR---QIEEVFDDS 167
Query: 183 CLTKEYLNSLIDWIPGMKDIRIRDLPSFI--QSTDPKDMMFNLCVEATENASKASAIIIH 240
+ LN IPG+ + +PS + + KD + + E II++
Sbjct: 168 DRDHQLLN-----IPGISN----QVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVN 218
Query: 241 TFDALEQQVLNALSFMFPHH-----LFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETEC 295
TF LEQ ++AL + H ++ +GPL L Q + L+ ++L+
Sbjct: 219 TFSDLEQSSIDAL---YDHDEKIPPIYAVGPLLDLKGQPNPK---LDQAQHDLI------ 266
Query: 296 LQWLDCKEPKSVIYVNFGSF-IFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLP 354
L+WLD + KSV+++ FGS + Q+ E+A+GL +S FLW + E P
Sbjct: 267 LKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWS-----NSAEKKVFP 321
Query: 355 AEFE--VKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGD 412
F ++ + KG + W PQ EVL H +IGGF++HCGWNSI+ES+ GVP++ WP +
Sbjct: 322 EGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAE 381
Query: 413 QPTNGRYVCNEWGVGMEINGD----DEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGL 468
Q N + EWGVG+ + D + V E+EK ++++M +K + K E K +
Sbjct: 382 QQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLM--DKDSIVHKKVQEMKEM 439
Query: 469 AEEAAAPHGSSSLNLDKLVNEI 490
+ A GSS +++ KL+++I
Sbjct: 440 SRNAVVDGGSSLISVGKLIDDI 461
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%)
Query: 370 WCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTN 416
W PQ ++L HP F+TH G N I E++ G+P + P DQP N
Sbjct: 75 WIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN 121
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 367 VASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGV 426
V W PQ ++L S F+TH G S +E+L + VPM+ P +Q N + E G+
Sbjct: 309 VHQWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIV-ELGL 365
Query: 427 GMEINGD 433
G I D
Sbjct: 366 GRHIPRD 372
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 11/123 (8%)
Query: 291 EETECLQWLDCKE-PKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGE 349
E+ + WL ++ + ++Y+ G+ + L GL + L P L
Sbjct: 227 EQGDLPAWLSSRDTARPLVYLTLGTSSGGTVEVLRAAIDGLAGLDADVLVASGPSLDVSG 286
Query: 350 TADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPF 409
++PA ++ SW PQ +L H + + H G + + +L +GVP + +P+
Sbjct: 287 LGEVPANVRLE--------SWVPQAALLPHVDL--VVHHGGSGTTLGALGAGVPQLSFPW 336
Query: 410 TGD 412
GD
Sbjct: 337 AGD 339
>pdb|2XCI|A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|B Chain B, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|C Chain C, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|D Chain D, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCU|A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|B Chain B, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|C Chain C, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|D Chain D, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
Length = 374
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 19/126 (15%)
Query: 357 FEVKAKEKGFVASWCPQEE-----------------VLKHPSIGGFLTHCGWNSIVESLC 399
FE KA++ GF S+ E V K +GG + G ++++E C
Sbjct: 241 FEKKARDFGFKTSFFENLEGDVILVDRFGILKELYPVGKIAIVGGTFVNIGGHNLLEPTC 300
Query: 400 SGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIR-NEVEKLVREMMEGEKGKQM 458
G+P+I P+T ++ E G G E+ + E V + E+ + +E+ EK +++
Sbjct: 301 WGIPVIYGPYTHKVNDLKEFLEKE-GAGFEVKNETELVTKLTELLSVKKEIKVEEKSREI 359
Query: 459 RNKAME 464
+ +E
Sbjct: 360 KGCYLE 365
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 44/118 (37%), Gaps = 13/118 (11%)
Query: 298 WLDCKEPKSVIYVNFGSFIFMNKQQLIEV--AMGLVNSNHPFLWIIRPDLVTGETADLPA 355
W + V+ V+ GS E A G + H L I R + E +LP
Sbjct: 225 WQRPAGAEKVVLVSLGSAFTKQPAFYRECVRAFGNLPGWHLVLQIGR-KVTPAELGELPD 283
Query: 356 EFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQ 413
EV W PQ +L+ + F+TH G E L + PMI P DQ
Sbjct: 284 NVEVH--------DWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQ 331
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 370 WCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGME 429
W P VL H LTH +++E+ +GVP++ P + E G+G
Sbjct: 288 WIPFHSVLAHAR--ACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSV 345
Query: 430 INGD--DEDVIRNEVEKL 445
+ D + IR VE+L
Sbjct: 346 LRPDQLEPASIREAVERL 363
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 370 WCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGME 429
W P +VL+ ++ +TH G ++ E+L G P++ P + D R V ++ G+G
Sbjct: 304 WVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRV-DQLGLGAV 360
Query: 430 INGDDED 436
+ G+ D
Sbjct: 361 LPGEKAD 367
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 370 WCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGME 429
W P +VL+ ++ +TH G ++ E+L G P++ P + D R V ++ G+G
Sbjct: 304 WVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRV-DQLGLGAV 360
Query: 430 INGDDED 436
+ G+ D
Sbjct: 361 LPGEKAD 367
>pdb|4F2G|A Chain A, The Crystal Structure Of Ornithine Carbamoyltransferase
From Burkholderia Thailandensis E264
Length = 309
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 344 DLVTGET-ADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGV 402
DLVT + + E E +A+++ F A WC EE++ H + HC E + +GV
Sbjct: 218 DLVTTDVWTSMGFEAENEARKRAF-ADWCVDEEMMSHANSDALFMHCLPAHRGEEVTAGV 276
>pdb|3LFH|A Chain A, Crystal Structure Of Manxa From Thermoanaerobacter
Tengcongensis
pdb|3LFH|B Chain B, Crystal Structure Of Manxa From Thermoanaerobacter
Tengcongensis
pdb|3LFH|C Chain C, Crystal Structure Of Manxa From Thermoanaerobacter
Tengcongensis
pdb|3LFH|D Chain D, Crystal Structure Of Manxa From Thermoanaerobacter
Tengcongensis
pdb|3LFH|E Chain E, Crystal Structure Of Manxa From Thermoanaerobacter
Tengcongensis
pdb|3LFH|F Chain F, Crystal Structure Of Manxa From Thermoanaerobacter
Tengcongensis
Length = 144
Score = 29.6 bits (65), Expect = 4.6, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
Query: 426 VGMEINGDDEDVIRNEVEKLVREMMEGEK 454
VG+ + GD+ +V+R EVEK+++E ++ +K
Sbjct: 35 VGLNL-GDNIEVVRKEVEKIIKEKLQEDK 62
>pdb|4AMB|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMB|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 5/107 (4%)
Query: 367 VASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGV 426
V W P +L+ + + H G +++ +L +GVP P Q TN R V G+
Sbjct: 292 VVEWIPLGALLE--TCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTN-RDVLT--GL 346
Query: 427 GMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAA 473
G+ + + + + +L+ + E ++R + E AE AA
Sbjct: 347 GIGFDAEAGSLGAEQCRRLLDDAGLREAALRVRQEMSEMPPPAETAA 393
>pdb|4AMG|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMG|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|C Chain C, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|D Chain D, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 5/107 (4%)
Query: 367 VASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGV 426
V W P +L+ + + H G +++ +L +GVP P Q TN R V G+
Sbjct: 292 VVEWIPLGALLE--TCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTN-RDVLT--GL 346
Query: 427 GMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAA 473
G+ + + + + +L+ + E ++R + E AE AA
Sbjct: 347 GIGFDAEAGSLGAEQCRRLLDDAGLREAALRVRQEMSEMPPPAETAA 393
>pdb|3ZQ5|A Chain A, Structure Of The Y263f Mutant Of The Cyanobacterial
Phytochrome Cph1
Length = 520
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 296 LQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGLVN---SNHPFLWIIRPDLV 346
LQWL+ +E + V + + S I+ + VA GL+ + H FL RP+++
Sbjct: 392 LQWLENREVQDVFFTSSLSQIYPDAVNFKSVASGLLAIPIARHNFLLWFRPEVL 445
>pdb|2VEA|A Chain A, The Complete Sensory Module Of The Cyanobacterial
Phytochrome Cph1 In The Pr-State
Length = 520
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 296 LQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGLVN---SNHPFLWIIRPDLV 346
LQWL+ +E + V + + S I+ + VA GL+ + H FL RP+++
Sbjct: 392 LQWLENREVQDVFFTSSLSQIYPDAVNFKSVASGLLAIPIARHNFLLWFRPEVL 445
>pdb|1QOU|A Chain A, Cen (Centroradialis) Protein From Antirrhinum
pdb|1QOU|B Chain B, Cen (Centroradialis) Protein From Antirrhinum
Length = 181
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 85 PTAQDAYSLGENIIN------NVLLHPFLDLLAKLNDSSNS-VNPAVSCIISDGFLPFTI 137
P D+ S G+ +++ N+ +H F+ LL K + ++P V C DGF
Sbjct: 99 PGTTDS-SFGKEVVSYEMPRPNIGIHRFVFLLFKQKKRGQAMLSPPVVC--RDGFNTRKF 155
Query: 138 TAAQQLGLPIVLFF 151
T +LGLP+ F
Sbjct: 156 TQENELGLPVAAVF 169
>pdb|3QEL|B Chain B, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEL|D Chain D, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEM|B Chain B, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
pdb|3QEM|D Chain D, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
Length = 364
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 323 LIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEF 357
+ EVA + + + + WI+ P LV G+T +P+EF
Sbjct: 210 IFEVANSVGLTGYGYTWIV-PSLVAGDTDTVPSEF 243
>pdb|3JPW|A Chain A, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Nr2b
pdb|3JPY|A Chain A, Crystal Structure Of The Zinc-Bound Amino Terminal Domain
Of The Nmda Receptor Subunit Nr2b
Length = 363
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 323 LIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEF 357
+ EVA + + + + WI+ P LV G+T +P+EF
Sbjct: 209 IFEVANSVGLTGYGYTWIV-PSLVAGDTDTVPSEF 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,921,196
Number of Sequences: 62578
Number of extensions: 617027
Number of successful extensions: 1343
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1309
Number of HSP's gapped (non-prelim): 26
length of query: 504
length of database: 14,973,337
effective HSP length: 103
effective length of query: 401
effective length of database: 8,527,803
effective search space: 3419649003
effective search space used: 3419649003
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)