Query 010684
Match_columns 504
No_of_seqs 137 out of 1383
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 03:23:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010684.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010684hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02555 limonoid glucosyltran 100.0 7.6E-67 1.7E-71 528.7 47.5 461 1-493 1-470 (480)
2 PLN02410 UDP-glucoronosyl/UDP- 100.0 8.3E-67 1.8E-71 526.7 46.2 442 9-492 6-450 (451)
3 PLN02562 UDP-glycosyltransfera 100.0 1.2E-65 2.6E-70 519.9 46.4 440 7-491 3-448 (448)
4 PLN02173 UDP-glucosyl transfer 100.0 6.1E-65 1.3E-69 510.7 45.1 435 10-491 5-447 (449)
5 PLN02207 UDP-glycosyltransfera 100.0 5.7E-64 1.2E-68 505.4 45.7 449 9-493 2-466 (468)
6 PLN02210 UDP-glucosyl transfer 100.0 9.7E-64 2.1E-68 506.5 46.0 441 9-491 7-454 (456)
7 PLN02992 coniferyl-alcohol glu 100.0 9.7E-64 2.1E-68 504.6 45.2 435 10-493 5-470 (481)
8 PLN02448 UDP-glycosyltransfera 100.0 1.8E-63 3.9E-68 508.0 45.9 444 7-492 7-457 (459)
9 PLN02863 UDP-glucoronosyl/UDP- 100.0 2.8E-63 6.1E-68 504.5 46.9 460 1-492 1-471 (477)
10 PLN02152 indole-3-acetate beta 100.0 4.9E-63 1.1E-67 497.7 45.5 437 10-490 3-454 (455)
11 PLN00164 glucosyltransferase; 100.0 5.1E-63 1.1E-67 504.3 46.0 445 9-494 2-475 (480)
12 PLN02670 transferase, transfer 100.0 6.6E-63 1.4E-67 498.2 43.7 449 8-494 4-467 (472)
13 PLN02534 UDP-glycosyltransfera 100.0 1.2E-62 2.6E-67 498.6 45.6 453 10-494 8-488 (491)
14 PLN02554 UDP-glycosyltransfera 100.0 1.6E-62 3.4E-67 502.8 43.5 449 10-494 2-480 (481)
15 PLN03007 UDP-glucosyltransfera 100.0 5.7E-62 1.2E-66 499.4 45.0 452 10-493 5-481 (482)
16 PLN02764 glycosyltransferase f 100.0 6.1E-62 1.3E-66 487.2 44.1 434 9-498 4-451 (453)
17 PLN02208 glycosyltransferase f 100.0 3.8E-62 8.1E-67 491.6 42.5 422 10-492 4-439 (442)
18 PLN03015 UDP-glucosyl transfer 100.0 2E-61 4.3E-66 484.9 45.1 440 10-490 3-466 (470)
19 PLN02167 UDP-glycosyltransfera 100.0 7.7E-61 1.7E-65 489.5 44.6 455 9-493 2-473 (475)
20 PLN03004 UDP-glycosyltransfera 100.0 5.5E-61 1.2E-65 482.3 42.2 436 10-481 3-450 (451)
21 PLN00414 glycosyltransferase f 100.0 1.1E-60 2.3E-65 481.7 43.4 420 9-493 3-441 (446)
22 PHA03392 egt ecdysteroid UDP-g 100.0 2.8E-52 6E-57 428.3 27.5 419 11-494 21-468 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 5.8E-53 1.3E-57 440.8 -2.0 413 12-493 2-444 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 1.2E-43 2.7E-48 359.1 34.8 381 16-491 1-390 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 2.4E-44 5.2E-49 365.9 23.9 385 11-489 1-400 (401)
26 COG1819 Glycosyl transferases, 100.0 1E-42 2.2E-47 348.3 24.2 400 10-496 1-404 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 3.2E-40 6.8E-45 344.9 21.9 429 10-492 5-455 (496)
28 PRK12446 undecaprenyldiphospho 99.9 2.5E-25 5.4E-30 220.1 27.8 321 12-464 3-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 3.9E-23 8.4E-28 203.5 24.3 308 11-449 1-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 99.9 1.8E-22 3.9E-27 197.3 26.9 326 11-465 1-338 (357)
31 TIGR00661 MJ1255 conserved hyp 99.9 4.1E-21 8.8E-26 188.8 23.9 127 305-459 188-318 (321)
32 PRK00726 murG undecaprenyldiph 99.8 6.7E-18 1.4E-22 169.0 28.8 341 11-489 2-354 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 7.6E-17 1.6E-21 160.9 28.3 313 12-453 1-325 (350)
34 TIGR01133 murG undecaprenyldip 99.7 1E-14 2.2E-19 145.5 28.3 77 372-453 243-322 (348)
35 TIGR00215 lpxB lipid-A-disacch 99.7 4.3E-15 9.2E-20 149.3 23.7 347 11-487 6-383 (385)
36 PRK13609 diacylglycerol glucos 99.7 4.3E-14 9.4E-19 142.7 27.2 133 304-453 201-339 (380)
37 TIGR03590 PseG pseudaminic aci 99.6 3.8E-14 8.3E-19 135.9 23.0 103 306-419 171-278 (279)
38 PRK00025 lpxB lipid-A-disaccha 99.6 5E-13 1.1E-17 135.0 25.3 151 304-468 185-358 (380)
39 COG4671 Predicted glycosyl tra 99.6 8.3E-13 1.8E-17 123.4 24.0 340 7-453 6-366 (400)
40 PRK13608 diacylglycerol glucos 99.6 4.6E-12 1E-16 128.0 28.7 144 304-464 201-351 (391)
41 PF04101 Glyco_tran_28_C: Glyc 99.5 1.2E-15 2.7E-20 135.1 -2.0 137 307-453 1-145 (167)
42 PLN02605 monogalactosyldiacylg 99.4 1.4E-10 3E-15 117.1 28.2 136 303-453 204-349 (382)
43 PF03033 Glyco_transf_28: Glyc 99.4 5.6E-14 1.2E-18 120.5 2.4 129 13-157 1-134 (139)
44 TIGR03492 conserved hypothetic 99.4 2.9E-10 6.2E-15 114.6 28.9 134 304-453 204-365 (396)
45 cd03814 GT1_like_2 This family 99.3 2.2E-09 4.8E-14 107.0 30.2 129 306-454 197-334 (364)
46 PLN02871 UDP-sulfoquinovose:DA 99.3 1.2E-08 2.7E-13 105.7 32.1 140 307-467 264-416 (465)
47 cd03817 GT1_UGDG_like This fam 99.2 5.2E-08 1.1E-12 97.2 30.9 144 305-468 201-360 (374)
48 cd03823 GT1_ExpE7_like This fa 99.2 5.4E-08 1.2E-12 96.6 30.8 133 304-453 189-330 (359)
49 COG3980 spsG Spore coat polysa 99.2 1.4E-09 3.1E-14 99.0 17.1 145 305-467 158-305 (318)
50 cd04962 GT1_like_5 This family 99.2 5.2E-08 1.1E-12 97.9 29.4 93 362-465 252-350 (371)
51 cd03818 GT1_ExpC_like This fam 99.2 2.4E-07 5.2E-12 94.1 34.0 94 362-466 280-381 (396)
52 cd03794 GT1_wbuB_like This fam 99.1 7.3E-08 1.6E-12 96.6 29.4 142 305-465 219-379 (394)
53 cd03801 GT1_YqgM_like This fam 99.1 2.6E-07 5.6E-12 91.5 31.0 82 361-453 254-342 (374)
54 cd03816 GT1_ALG1_like This fam 99.1 6.9E-07 1.5E-11 91.2 32.5 91 363-466 294-399 (415)
55 cd03800 GT1_Sucrose_synthase T 99.1 4.7E-07 1E-11 91.7 31.3 92 362-464 282-381 (398)
56 cd03808 GT1_cap1E_like This fa 99.0 6.5E-07 1.4E-11 88.5 31.4 136 304-454 186-331 (359)
57 cd03798 GT1_wlbH_like This fam 99.0 6E-07 1.3E-11 89.2 31.1 132 305-453 201-345 (377)
58 PRK10307 putative glycosyl tra 99.0 7.1E-07 1.5E-11 91.2 32.2 96 363-467 284-389 (412)
59 cd03825 GT1_wcfI_like This fam 99.0 1.4E-06 3.1E-11 86.9 31.8 93 361-464 242-343 (365)
60 TIGR00236 wecB UDP-N-acetylglu 99.0 3.5E-07 7.7E-12 91.8 26.8 135 306-463 198-342 (365)
61 cd03821 GT1_Bme6_like This fam 99.0 1.6E-06 3.5E-11 86.3 30.0 92 361-465 260-359 (375)
62 cd03795 GT1_like_4 This family 99.0 9.7E-07 2.1E-11 87.9 28.3 143 306-466 191-347 (357)
63 PRK05749 3-deoxy-D-manno-octul 98.9 1.9E-06 4.1E-11 88.4 30.4 93 364-465 303-402 (425)
64 cd03805 GT1_ALG2_like This fam 98.9 2.4E-06 5.2E-11 86.5 30.0 93 361-465 278-378 (392)
65 PF04007 DUF354: Protein of un 98.9 3.1E-06 6.7E-11 82.4 28.9 136 293-450 168-308 (335)
66 cd03820 GT1_amsD_like This fam 98.9 2.8E-06 6.1E-11 83.5 29.5 95 362-466 234-334 (348)
67 TIGR03449 mycothiol_MshA UDP-N 98.9 5.9E-06 1.3E-10 84.2 31.6 94 362-466 282-383 (405)
68 cd03786 GT1_UDP-GlcNAc_2-Epime 98.9 3E-07 6.5E-12 92.2 21.6 131 304-453 197-338 (363)
69 cd03822 GT1_ecORF704_like This 98.8 3.7E-06 8.1E-11 83.7 28.3 95 361-467 245-350 (366)
70 cd03799 GT1_amsK_like This is 98.8 1.2E-05 2.6E-10 80.0 30.9 83 361-454 234-329 (355)
71 cd03819 GT1_WavL_like This fam 98.8 1E-05 2.2E-10 80.6 29.7 148 305-467 184-347 (355)
72 TIGR02468 sucrsPsyn_pln sucros 98.8 3E-05 6.5E-10 85.1 33.6 96 361-467 546-653 (1050)
73 cd03796 GT1_PIG-A_like This fa 98.7 2E-05 4.3E-10 80.1 29.5 79 362-453 249-334 (398)
74 PRK14089 ipid-A-disaccharide s 98.7 2.9E-06 6.4E-11 83.3 22.2 147 306-469 168-332 (347)
75 cd05844 GT1_like_7 Glycosyltra 98.7 3.2E-05 7E-10 77.4 28.8 93 361-464 243-349 (367)
76 cd03802 GT1_AviGT4_like This f 98.7 1.9E-05 4.2E-10 77.8 26.8 127 308-453 173-309 (335)
77 PRK09922 UDP-D-galactose:(gluc 98.7 2.2E-05 4.8E-10 78.6 26.8 144 306-468 180-343 (359)
78 cd03807 GT1_WbnK_like This fam 98.7 0.00016 3.4E-09 71.6 32.9 80 361-453 249-333 (365)
79 cd03811 GT1_WabH_like This fam 98.6 1.9E-05 4.2E-10 77.6 25.4 81 362-453 245-333 (353)
80 cd03812 GT1_CapH_like This fam 98.6 7.7E-05 1.7E-09 74.3 29.6 130 305-454 191-333 (358)
81 TIGR02472 sucr_P_syn_N sucrose 98.6 5.5E-05 1.2E-09 77.9 29.1 82 361-453 315-407 (439)
82 cd04951 GT1_WbdM_like This fam 98.6 5.4E-05 1.2E-09 75.3 27.4 92 362-469 244-341 (360)
83 TIGR03568 NeuC_NnaA UDP-N-acet 98.6 2.6E-05 5.6E-10 78.0 24.2 130 305-451 201-338 (365)
84 TIGR02149 glgA_Coryne glycogen 98.5 0.00019 4.2E-09 72.5 29.2 144 306-464 201-365 (388)
85 cd04955 GT1_like_6 This family 98.5 0.00056 1.2E-08 68.1 31.8 124 309-453 196-331 (363)
86 cd03806 GT1_ALG11_like This fa 98.5 0.00023 5E-09 72.8 28.9 81 361-453 303-393 (419)
87 PRK01021 lpxB lipid-A-disaccha 98.5 0.00014 2.9E-09 75.4 26.9 162 297-469 405-589 (608)
88 TIGR03088 stp2 sugar transfera 98.5 0.0011 2.3E-08 66.8 33.2 92 362-464 254-351 (374)
89 PLN02949 transferase, transfer 98.4 0.0012 2.6E-08 68.1 32.0 99 361-470 333-442 (463)
90 PLN02275 transferase, transfer 98.4 0.0006 1.3E-08 68.6 29.1 75 363-450 286-371 (371)
91 PLN02846 digalactosyldiacylgly 98.4 0.00075 1.6E-08 68.9 29.6 73 367-453 288-364 (462)
92 PF02350 Epimerase_2: UDP-N-ac 98.4 5.9E-06 1.3E-10 81.7 14.0 131 303-453 178-319 (346)
93 cd03792 GT1_Trehalose_phosphor 98.3 0.00036 7.8E-09 70.2 25.5 109 362-490 251-369 (372)
94 cd03804 GT1_wbaZ_like This fam 98.3 0.00014 3E-09 72.5 22.1 124 309-453 198-327 (351)
95 cd03809 GT1_mtfB_like This fam 98.3 0.0001 2.2E-09 73.3 21.2 88 361-464 251-345 (365)
96 KOG3349 Predicted glycosyltran 98.3 3.9E-06 8.4E-11 69.3 8.5 118 306-431 4-133 (170)
97 PRK15179 Vi polysaccharide bio 98.3 0.0062 1.4E-07 65.5 34.6 94 361-466 572-674 (694)
98 PRK00654 glgA glycogen synthas 98.3 0.00091 2E-08 69.5 27.7 134 305-451 281-427 (466)
99 PF02684 LpxB: Lipid-A-disacch 98.3 0.00062 1.4E-08 67.4 24.9 163 304-481 183-366 (373)
100 COG1519 KdtA 3-deoxy-D-manno-o 98.2 0.0029 6.2E-08 62.3 28.5 324 12-470 50-405 (419)
101 cd03791 GT1_Glycogen_synthase_ 98.2 0.0019 4.1E-08 67.3 29.8 134 305-451 295-441 (476)
102 TIGR03087 stp1 sugar transfera 98.2 0.00014 3.1E-09 73.8 20.5 91 362-465 279-376 (397)
103 TIGR02470 sucr_synth sucrose s 98.2 0.012 2.6E-07 63.7 34.6 92 362-462 618-724 (784)
104 PLN02501 digalactosyldiacylgly 98.1 0.0036 7.8E-08 65.8 27.9 76 364-453 602-682 (794)
105 COG0381 WecB UDP-N-acetylgluco 98.1 0.00081 1.7E-08 65.5 21.6 139 304-465 203-351 (383)
106 TIGR02095 glgA glycogen/starch 98.1 0.011 2.4E-07 61.6 31.5 133 306-451 291-436 (473)
107 PLN00142 sucrose synthase 98.0 0.014 3E-07 63.3 30.1 90 362-462 641-747 (815)
108 TIGR02918 accessory Sec system 97.9 0.0042 9.2E-08 64.7 24.5 103 362-470 375-485 (500)
109 PLN02316 synthase/transferase 97.9 0.059 1.3E-06 60.1 33.1 85 362-452 899-998 (1036)
110 PF00534 Glycos_transf_1: Glyc 97.8 0.00043 9.2E-09 61.2 13.0 82 361-453 71-159 (172)
111 cd04946 GT1_AmsK_like This fam 97.8 0.00099 2.2E-08 67.9 17.2 95 363-465 289-391 (407)
112 cd03813 GT1_like_3 This family 97.8 0.017 3.8E-07 60.1 26.5 92 361-463 352-454 (475)
113 PRK15427 colanic acid biosynth 97.8 0.0013 2.8E-08 66.9 17.4 112 361-490 277-403 (406)
114 PRK15484 lipopolysaccharide 1, 97.8 0.0022 4.7E-08 64.7 18.6 85 360-454 254-346 (380)
115 COG0763 LpxB Lipid A disacchar 97.7 0.014 2.9E-07 57.0 22.7 173 303-490 186-379 (381)
116 cd04949 GT1_gtfA_like This fam 97.7 0.0051 1.1E-07 61.7 21.0 102 361-470 259-364 (372)
117 cd04950 GT1_like_1 Glycosyltra 97.6 0.099 2.1E-06 52.6 31.0 79 362-453 253-341 (373)
118 PF13844 Glyco_transf_41: Glyc 97.6 0.0016 3.5E-08 66.0 14.4 142 303-454 282-432 (468)
119 PRK10017 colanic acid biosynth 97.4 0.17 3.7E-06 51.5 30.1 179 297-492 226-424 (426)
120 COG5017 Uncharacterized conser 97.4 0.0013 2.9E-08 53.5 9.0 107 308-431 2-122 (161)
121 COG1817 Uncharacterized protei 97.4 0.14 2.9E-06 48.5 23.0 105 18-154 7-114 (346)
122 PF13692 Glyco_trans_1_4: Glyc 97.2 0.0021 4.5E-08 54.2 8.8 127 307-452 3-135 (135)
123 cd01635 Glycosyltransferase_GT 97.1 0.073 1.6E-06 48.6 19.1 50 362-413 160-217 (229)
124 PRK09814 beta-1,6-galactofuran 97.1 0.0038 8.2E-08 61.8 10.7 110 362-488 206-331 (333)
125 PF13477 Glyco_trans_4_2: Glyc 96.5 0.059 1.3E-06 45.5 11.9 103 12-152 1-107 (139)
126 PHA01633 putative glycosyl tra 96.3 0.13 2.8E-06 50.5 14.9 103 361-469 199-324 (335)
127 PF06258 Mito_fiss_Elm1: Mitoc 96.0 0.95 2.1E-05 44.0 18.9 57 372-431 221-281 (311)
128 PRK14098 glycogen synthase; Pr 96.0 0.33 7.1E-06 50.7 16.7 135 306-450 307-449 (489)
129 TIGR02193 heptsyl_trn_I lipopo 96.0 0.41 8.9E-06 46.9 16.7 134 304-450 178-319 (319)
130 COG3914 Spy Predicted O-linked 95.9 0.082 1.8E-06 54.0 11.3 117 303-427 427-557 (620)
131 PRK10125 putative glycosyl tra 95.7 2.8 6.1E-05 42.6 27.8 101 321-446 256-365 (405)
132 PF06722 DUF1205: Protein of u 95.6 0.012 2.6E-07 46.2 3.3 52 293-344 28-84 (97)
133 KOG4626 O-linked N-acetylgluco 95.5 0.064 1.4E-06 55.1 8.8 143 303-453 756-905 (966)
134 PRK15490 Vi polysaccharide bio 95.5 3.8 8.2E-05 43.0 31.5 64 362-432 454-522 (578)
135 PHA01630 putative group 1 glyc 95.4 0.45 9.8E-06 46.9 14.4 76 370-453 197-295 (331)
136 PRK10916 ADP-heptose:LPS hepto 95.4 1.6 3.5E-05 43.3 18.6 103 11-149 1-106 (348)
137 TIGR02201 heptsyl_trn_III lipo 94.8 2.5 5.5E-05 41.8 18.0 105 12-149 1-108 (344)
138 PF13524 Glyco_trans_1_2: Glyc 94.5 0.45 9.8E-06 36.8 9.4 83 388-487 9-91 (92)
139 PF13579 Glyco_trans_4_4: Glyc 93.9 0.13 2.8E-06 44.0 5.8 97 26-152 6-104 (160)
140 PF12000 Glyco_trans_4_3: Gkyc 93.9 0.43 9.2E-06 41.8 8.8 95 36-152 1-96 (171)
141 PRK10964 ADP-heptose:LPS hepto 92.8 10 0.00022 37.0 21.5 131 306-451 179-321 (322)
142 COG0859 RfaF ADP-heptose:LPS h 92.4 8.4 0.00018 38.0 16.7 105 11-150 2-108 (334)
143 PLN02939 transferase, transfer 92.4 6.1 0.00013 44.1 16.6 84 362-451 836-930 (977)
144 cd03789 GT1_LPS_heptosyltransf 92.2 11 0.00024 35.9 19.3 102 12-149 1-105 (279)
145 PF01975 SurE: Survival protei 91.8 0.35 7.5E-06 43.6 5.4 40 11-51 1-40 (196)
146 TIGR03713 acc_sec_asp1 accesso 91.7 0.72 1.6E-05 48.3 8.5 92 363-470 409-507 (519)
147 TIGR02400 trehalose_OtsA alpha 91.3 1.9 4.2E-05 44.5 11.0 103 369-491 342-455 (456)
148 TIGR02195 heptsyl_trn_II lipop 90.8 17 0.00038 35.6 20.8 102 12-149 1-105 (334)
149 PF13439 Glyco_transf_4: Glyco 90.4 1.9 4.1E-05 37.3 8.9 29 21-49 12-40 (177)
150 PRK14099 glycogen synthase; Pr 89.5 11 0.00025 39.2 15.1 87 361-453 348-448 (485)
151 cd03788 GT1_TPS Trehalose-6-Ph 89.0 1.9 4.1E-05 44.7 8.8 104 367-490 345-459 (460)
152 cd02067 B12-binding B12 bindin 88.3 7.2 0.00016 31.7 10.3 39 12-50 1-39 (119)
153 PRK02261 methylaspartate mutas 87.9 1.6 3.5E-05 36.8 6.2 47 9-55 2-48 (137)
154 PF08660 Alg14: Oligosaccharid 87.2 5.4 0.00012 35.0 9.3 116 15-152 2-129 (170)
155 COG0438 RfaG Glycosyltransfera 86.8 30 0.00064 33.0 17.1 80 363-453 257-343 (381)
156 PRK13932 stationary phase surv 86.6 7.1 0.00015 36.7 10.1 41 8-51 3-44 (257)
157 COG4370 Uncharacterized protei 85.4 2.4 5.1E-05 40.2 6.2 94 363-467 294-391 (412)
158 cd02070 corrinoid_protein_B12- 85.2 7.7 0.00017 35.1 9.6 45 9-53 81-125 (201)
159 PRK10422 lipopolysaccharide co 85.1 9.1 0.0002 38.0 11.0 106 10-149 5-113 (352)
160 PF04464 Glyphos_transf: CDP-G 84.4 3 6.6E-05 41.7 7.2 112 362-486 251-366 (369)
161 cd03793 GT1_Glycogen_synthase_ 83.4 5 0.00011 42.2 8.2 79 372-453 467-553 (590)
162 TIGR02919 accessory Sec system 83.1 32 0.00069 35.3 13.9 123 304-453 282-412 (438)
163 TIGR02370 pyl_corrinoid methyl 81.8 21 0.00046 32.2 10.9 47 9-55 83-129 (197)
164 PF02951 GSH-S_N: Prokaryotic 81.4 2.6 5.5E-05 34.5 4.3 38 11-48 1-41 (119)
165 PF05159 Capsule_synth: Capsul 81.2 7.6 0.00017 36.9 8.3 80 323-409 143-226 (269)
166 PF02441 Flavoprotein: Flavopr 80.4 3 6.5E-05 34.7 4.6 45 11-56 1-45 (129)
167 PLN03063 alpha,alpha-trehalose 80.0 9.2 0.0002 42.5 9.4 101 375-494 371-479 (797)
168 TIGR00715 precor6x_red precorr 79.0 6.3 0.00014 37.2 6.7 35 11-50 1-35 (256)
169 KOG1250 Threonine/serine dehyd 77.8 64 0.0014 32.2 13.0 61 385-453 248-317 (457)
170 PRK13933 stationary phase surv 77.7 23 0.0005 33.2 9.9 24 27-51 16-39 (253)
171 PF02571 CbiJ: Precorrin-6x re 77.4 7.4 0.00016 36.5 6.6 35 11-51 1-35 (249)
172 TIGR01007 eps_fam capsular exo 76.9 49 0.0011 29.7 11.9 40 10-49 16-57 (204)
173 COG2894 MinD Septum formation 76.9 5.1 0.00011 36.3 5.0 43 12-54 3-50 (272)
174 PRK06718 precorrin-2 dehydroge 76.2 60 0.0013 29.3 14.7 149 299-472 6-165 (202)
175 cd00550 ArsA_ATPase Oxyanion-t 76.0 31 0.00067 32.5 10.6 37 13-49 3-39 (254)
176 TIGR00087 surE 5'/3'-nucleotid 75.4 15 0.00032 34.4 8.0 26 26-52 15-40 (244)
177 PF12146 Hydrolase_4: Putative 75.3 8.5 0.00018 28.9 5.3 35 10-44 15-49 (79)
178 smart00851 MGS MGS-like domain 73.7 36 0.00079 26.0 8.7 28 27-56 2-29 (90)
179 PF02310 B12-binding: B12 bind 73.7 9.5 0.00021 31.0 5.8 43 11-53 1-43 (121)
180 COG0859 RfaF ADP-heptose:LPS h 71.3 29 0.00064 34.1 9.6 101 10-154 175-280 (334)
181 TIGR03029 EpsG chain length de 71.2 66 0.0014 30.5 11.8 38 9-46 101-140 (274)
182 COG1618 Predicted nucleotide k 70.6 12 0.00026 32.3 5.6 55 10-74 5-59 (179)
183 cd01974 Nitrogenase_MoFe_beta 69.7 41 0.0009 34.5 10.5 26 123-151 377-402 (435)
184 PRK11519 tyrosine kinase; Prov 69.4 89 0.0019 34.5 13.6 39 10-48 525-565 (719)
185 cd00561 CobA_CobO_BtuR ATP:cor 69.3 75 0.0016 27.5 11.9 98 12-134 4-106 (159)
186 PF04127 DFP: DNA / pantothena 69.2 4.5 9.8E-05 36.0 3.0 39 10-48 3-53 (185)
187 PRK14501 putative bifunctional 68.7 13 0.00028 41.0 7.0 112 366-493 345-463 (726)
188 PRK13935 stationary phase surv 68.4 27 0.00058 32.8 7.9 25 26-51 15-39 (253)
189 COG2861 Uncharacterized protei 67.5 27 0.00058 32.2 7.4 39 103-149 137-178 (250)
190 PRK13789 phosphoribosylamine-- 67.2 18 0.00039 37.0 7.3 36 10-50 4-39 (426)
191 COG0003 ArsA Predicted ATPase 66.8 53 0.0011 32.1 10.0 40 11-50 2-42 (322)
192 PRK08305 spoVFB dipicolinate s 66.6 12 0.00026 33.6 5.1 43 9-51 4-46 (196)
193 COG0541 Ffh Signal recognition 66.5 39 0.00085 34.2 9.0 43 9-51 99-141 (451)
194 PRK00090 bioD dithiobiotin syn 66.0 85 0.0018 28.6 11.0 33 13-45 2-35 (222)
195 TIGR00708 cobA cob(I)alamin ad 66.0 94 0.002 27.3 11.0 98 10-134 5-108 (173)
196 PF01075 Glyco_transf_9: Glyco 65.9 48 0.001 30.7 9.5 100 10-154 105-212 (247)
197 cd07038 TPP_PYR_PDC_IPDC_like 65.7 51 0.0011 28.5 8.9 28 382-409 60-93 (162)
198 PF07015 VirC1: VirC1 protein; 65.6 25 0.00054 32.4 7.0 36 18-53 10-45 (231)
199 PRK02797 4-alpha-L-fucosyltran 65.4 1.1E+02 0.0024 29.6 11.5 81 363-450 206-292 (322)
200 COG2185 Sbm Methylmalonyl-CoA 64.9 15 0.00033 31.0 5.0 40 8-47 10-49 (143)
201 KOG2941 Beta-1,4-mannosyltrans 64.8 1.3E+02 0.0028 29.6 11.7 126 8-157 10-142 (444)
202 COG0496 SurE Predicted acid ph 64.7 25 0.00055 32.8 6.9 26 26-52 15-40 (252)
203 cd01980 Chlide_reductase_Y Chl 64.6 25 0.00055 35.8 7.8 27 123-152 350-376 (416)
204 COG2910 Putative NADH-flavin r 64.5 9 0.0002 33.8 3.7 32 11-46 1-32 (211)
205 PRK10867 signal recognition pa 63.8 48 0.001 34.0 9.4 43 10-52 100-143 (433)
206 TIGR01470 cysG_Nterm siroheme 63.1 1.2E+02 0.0026 27.5 13.3 148 304-472 9-165 (205)
207 COG3660 Predicted nucleoside-d 62.8 1.4E+02 0.003 28.2 18.7 38 369-407 234-271 (329)
208 PRK05986 cob(I)alamin adenolsy 62.8 1.1E+02 0.0025 27.3 12.0 101 9-134 21-126 (191)
209 cd01965 Nitrogenase_MoFe_beta_ 62.2 34 0.00074 35.0 8.2 38 105-151 359-396 (428)
210 KOG0780 Signal recognition par 62.1 25 0.00054 34.9 6.5 42 10-51 101-142 (483)
211 COG0052 RpsB Ribosomal protein 62.0 46 0.00099 30.9 7.9 33 124-156 157-191 (252)
212 PF09314 DUF1972: Domain of un 61.8 72 0.0016 28.4 9.0 45 22-74 17-62 (185)
213 TIGR00347 bioD dethiobiotin sy 61.0 53 0.0011 28.3 8.2 27 18-44 6-32 (166)
214 cd01421 IMPCH Inosine monophos 60.3 50 0.0011 29.3 7.6 44 25-80 11-56 (187)
215 TIGR02015 BchY chlorophyllide 60.0 61 0.0013 33.1 9.5 31 12-47 287-317 (422)
216 COG1797 CobB Cobyrinic acid a, 59.6 12 0.00025 37.7 4.0 33 12-44 2-35 (451)
217 cd02071 MM_CoA_mut_B12_BD meth 59.5 23 0.0005 29.0 5.3 40 12-51 1-40 (122)
218 PF04413 Glycos_transf_N: 3-De 59.4 64 0.0014 28.7 8.5 99 12-151 22-125 (186)
219 TIGR03018 pepcterm_TyrKin exop 58.8 1.4E+02 0.003 26.9 11.8 40 9-48 33-75 (207)
220 PF01075 Glyco_transf_9: Glyco 58.3 25 0.00053 32.7 6.0 94 304-407 104-208 (247)
221 PF02844 GARS_N: Phosphoribosy 58.0 58 0.0013 25.7 6.9 27 123-149 62-91 (100)
222 PRK00346 surE 5'(3')-nucleotid 57.9 49 0.0011 31.1 7.7 25 26-51 15-39 (250)
223 COG1703 ArgK Putative periplas 57.9 75 0.0016 30.6 8.8 117 10-152 51-174 (323)
224 TIGR02398 gluc_glyc_Psyn gluco 57.2 1E+02 0.0023 32.1 10.7 110 365-493 364-483 (487)
225 PF00448 SRP54: SRP54-type pro 57.1 90 0.0019 28.0 9.1 39 12-50 3-41 (196)
226 PRK04885 ppnK inorganic polyph 56.7 22 0.00049 33.6 5.3 54 379-453 35-94 (265)
227 COG1484 DnaC DNA replication p 56.2 25 0.00055 33.1 5.6 48 9-56 104-151 (254)
228 TIGR02195 heptsyl_trn_II lipop 56.0 1.2E+02 0.0026 29.7 10.7 100 10-152 174-278 (334)
229 PF01591 6PF2K: 6-phosphofruct 55.9 50 0.0011 30.4 7.3 114 7-150 9-128 (222)
230 TIGR01285 nifN nitrogenase mol 55.9 88 0.0019 32.1 9.9 26 123-151 373-398 (432)
231 KOG1387 Glycosyltransferase [C 55.9 2.1E+02 0.0046 28.2 23.7 118 360-492 334-461 (465)
232 cd01423 MGS_CPS_I_III Methylgl 55.6 80 0.0017 25.4 7.9 92 15-149 4-106 (116)
233 PRK14099 glycogen synthase; Pr 55.5 20 0.00044 37.4 5.3 40 9-48 2-47 (485)
234 cd02069 methionine_synthase_B1 55.2 32 0.0007 31.4 6.0 45 9-53 87-131 (213)
235 TIGR02852 spore_dpaB dipicolin 55.2 18 0.0004 32.2 4.2 40 11-50 1-40 (187)
236 TIGR01501 MthylAspMutase methy 54.7 36 0.00079 28.5 5.6 44 10-53 1-44 (134)
237 PRK13931 stationary phase surv 54.4 73 0.0016 30.1 8.3 25 27-51 16-43 (261)
238 PTZ00445 p36-lilke protein; Pr 54.0 61 0.0013 29.5 7.2 116 22-152 74-206 (219)
239 TIGR02329 propionate_PrpR prop 53.8 50 0.0011 34.8 7.8 112 21-153 36-172 (526)
240 cd00532 MGS-like MGS-like doma 53.8 1.1E+02 0.0025 24.4 8.8 85 23-149 10-104 (112)
241 PRK09841 cryptic autophosphory 53.7 1.4E+02 0.0031 32.9 11.8 40 10-49 530-571 (726)
242 PRK10490 sensor protein KdpD; 53.3 62 0.0013 36.8 9.0 38 10-47 24-61 (895)
243 PRK08506 replicative DNA helic 53.1 75 0.0016 33.0 9.0 46 10-55 192-237 (472)
244 PRK10916 ADP-heptose:LPS hepto 52.6 32 0.0007 34.0 6.1 104 10-152 180-288 (348)
245 PF02142 MGS: MGS-like domain 52.0 53 0.0012 25.4 6.0 36 27-74 2-37 (95)
246 TIGR01425 SRP54_euk signal rec 51.9 75 0.0016 32.4 8.4 40 11-50 101-140 (429)
247 TIGR03600 phage_DnaB phage rep 51.8 85 0.0018 32.0 9.1 44 12-55 196-240 (421)
248 cd03789 GT1_LPS_heptosyltransf 51.4 74 0.0016 30.2 8.2 100 12-153 123-226 (279)
249 cd07035 TPP_PYR_POX_like Pyrim 51.2 1.3E+02 0.0028 25.5 9.0 26 384-409 62-93 (155)
250 PRK05595 replicative DNA helic 50.9 66 0.0014 33.2 8.1 44 12-55 203-247 (444)
251 PF01210 NAD_Gly3P_dh_N: NAD-d 50.8 13 0.00028 32.0 2.6 40 12-56 1-41 (157)
252 TIGR00355 purH phosphoribosyla 50.6 75 0.0016 32.9 8.1 45 25-81 11-57 (511)
253 cd07039 TPP_PYR_POX Pyrimidine 50.1 1.7E+02 0.0037 25.3 11.1 27 383-409 65-97 (164)
254 COG0552 FtsY Signal recognitio 50.1 1.5E+02 0.0032 29.1 9.6 44 10-53 139-182 (340)
255 TIGR02655 circ_KaiC circadian 49.5 2E+02 0.0044 30.0 11.5 47 10-56 263-309 (484)
256 PRK06321 replicative DNA helic 49.1 1.1E+02 0.0024 31.8 9.4 44 12-55 228-272 (472)
257 PF06506 PrpR_N: Propionate ca 49.0 22 0.00047 31.4 3.7 115 21-155 16-154 (176)
258 PRK01231 ppnK inorganic polyph 48.8 88 0.0019 30.2 8.1 55 378-453 61-119 (295)
259 TIGR03371 cellulose_yhjQ cellu 48.6 2.2E+02 0.0048 26.2 11.8 32 18-49 10-41 (246)
260 PLN02939 transferase, transfer 48.3 35 0.00075 38.4 5.8 41 8-48 479-525 (977)
261 PRK05920 aromatic acid decarbo 48.2 38 0.00083 30.7 5.2 44 10-54 3-46 (204)
262 TIGR00379 cobB cobyrinic acid 48.1 2.3E+02 0.0051 29.2 11.6 34 13-46 2-36 (449)
263 TIGR00959 ffh signal recogniti 48.0 1.2E+02 0.0025 31.1 9.2 43 10-52 99-142 (428)
264 PRK06732 phosphopantothenate-- 47.9 24 0.00053 32.6 4.0 20 27-46 29-48 (229)
265 KOG0853 Glycosyltransferase [C 47.8 23 0.00049 36.6 4.0 62 393-464 381-442 (495)
266 COG4088 Predicted nucleotide k 47.5 2.2E+02 0.0049 26.0 10.6 34 13-46 4-37 (261)
267 PF00551 Formyl_trans_N: Formy 47.4 2E+02 0.0043 25.3 9.9 27 11-40 1-27 (181)
268 PRK01077 cobyrinic acid a,c-di 47.2 58 0.0013 33.6 7.0 36 11-46 3-40 (451)
269 PRK03708 ppnK inorganic polyph 46.7 35 0.00075 32.6 4.9 54 379-453 57-113 (277)
270 PRK07313 phosphopantothenoylcy 46.5 33 0.00071 30.5 4.5 42 11-53 2-43 (182)
271 PLN02470 acetolactate synthase 46.4 2.9E+02 0.0063 29.6 12.5 90 311-408 2-109 (585)
272 COG0132 BioD Dethiobiotin synt 46.4 2.4E+02 0.0052 26.0 12.4 35 11-45 2-38 (223)
273 KOG1111 N-acetylglucosaminyltr 46.3 2E+02 0.0043 28.5 9.7 85 317-408 207-302 (426)
274 PRK02155 ppnK NAD(+)/NADH kina 46.1 47 0.001 32.0 5.8 55 378-453 62-120 (291)
275 PRK06249 2-dehydropantoate 2-r 46.0 51 0.0011 32.1 6.2 40 10-55 5-44 (313)
276 PF06925 MGDG_synth: Monogalac 45.9 56 0.0012 28.4 5.9 22 23-44 1-25 (169)
277 TIGR00173 menD 2-succinyl-5-en 45.9 1.8E+02 0.0039 29.8 10.4 25 383-407 65-95 (432)
278 PRK12921 2-dehydropantoate 2-r 45.3 41 0.0009 32.4 5.4 39 11-54 1-39 (305)
279 PRK03378 ppnK inorganic polyph 44.4 43 0.00092 32.3 5.2 58 375-453 59-120 (292)
280 COG2086 FixA Electron transfer 44.1 77 0.0017 29.9 6.6 29 123-151 111-145 (260)
281 PLN02924 thymidylate kinase 44.1 2.6E+02 0.0055 25.6 10.1 45 1-45 6-51 (220)
282 PRK03359 putative electron tra 43.9 40 0.00088 31.7 4.8 30 123-152 112-147 (256)
283 PRK04539 ppnK inorganic polyph 43.7 61 0.0013 31.3 6.1 58 375-453 64-125 (296)
284 PRK09620 hypothetical protein; 43.7 37 0.0008 31.4 4.5 38 10-47 3-52 (229)
285 TIGR02201 heptsyl_trn_III lipo 43.7 3.2E+02 0.007 26.7 11.9 28 123-152 260-287 (344)
286 PF07355 GRDB: Glycine/sarcosi 43.6 48 0.001 32.5 5.3 28 123-150 80-117 (349)
287 PRK14077 pnk inorganic polypho 43.3 48 0.001 31.8 5.4 58 375-453 60-121 (287)
288 cd03466 Nitrogenase_NifN_2 Nit 43.2 1.6E+02 0.0034 30.2 9.5 26 123-151 372-397 (429)
289 PF07429 Glyco_transf_56: 4-al 43.2 3.4E+02 0.0074 26.8 12.9 82 363-451 245-332 (360)
290 PRK08155 acetolactate synthase 43.1 2.1E+02 0.0046 30.5 10.8 77 322-408 15-109 (564)
291 TIGR01005 eps_transp_fam exopo 43.0 3.4E+02 0.0075 30.1 12.8 40 10-49 545-586 (754)
292 PRK05632 phosphate acetyltrans 42.8 2.9E+02 0.0062 30.4 11.8 35 12-46 4-39 (684)
293 COG2120 Uncharacterized protei 42.8 48 0.001 30.8 5.2 45 1-45 1-45 (237)
294 COG2159 Predicted metal-depend 42.7 1.3E+02 0.0028 29.0 8.3 83 293-390 116-201 (293)
295 PRK13604 luxD acyl transferase 42.7 59 0.0013 31.5 5.8 36 9-44 35-70 (307)
296 PRK13982 bifunctional SbtC-lik 42.6 33 0.00071 35.5 4.3 41 8-48 254-306 (475)
297 PRK13934 stationary phase surv 42.6 44 0.00096 31.6 4.8 26 25-51 14-39 (266)
298 PF09001 DUF1890: Domain of un 42.3 43 0.00093 27.9 4.1 35 22-56 11-45 (139)
299 PRK12342 hypothetical protein; 42.0 44 0.00096 31.4 4.8 30 123-152 109-144 (254)
300 PRK12446 undecaprenyldiphospho 42.0 97 0.0021 30.7 7.5 96 306-407 3-120 (352)
301 PRK07710 acetolactate synthase 41.9 1.4E+02 0.0029 32.0 9.1 26 383-408 80-111 (571)
302 TIGR00640 acid_CoA_mut_C methy 41.7 80 0.0017 26.3 5.8 39 9-47 1-39 (132)
303 PRK11823 DNA repair protein Ra 41.6 76 0.0017 32.7 6.8 43 12-54 82-124 (446)
304 COG1435 Tdk Thymidine kinase [ 41.4 2.6E+02 0.0056 25.2 9.0 39 11-49 4-43 (201)
305 PRK07313 phosphopantothenoylcy 40.7 2.6E+02 0.0056 24.8 9.2 137 306-451 3-179 (182)
306 PRK10416 signal recognition pa 40.6 2.6E+02 0.0056 27.3 10.0 41 10-50 114-154 (318)
307 cd01121 Sms Sms (bacterial rad 40.5 81 0.0018 31.6 6.6 42 13-54 85-126 (372)
308 PRK00784 cobyric acid synthase 40.4 3.9E+02 0.0084 27.9 12.0 34 13-46 5-39 (488)
309 PLN02929 NADH kinase 40.3 58 0.0012 31.5 5.3 67 378-453 63-138 (301)
310 PRK06522 2-dehydropantoate 2-r 40.3 44 0.00095 32.1 4.8 31 11-46 1-31 (304)
311 TIGR01286 nifK nitrogenase mol 40.2 2.2E+02 0.0047 30.0 10.0 26 123-151 437-462 (515)
312 PRK01911 ppnK inorganic polyph 40.0 64 0.0014 31.1 5.6 58 375-453 60-121 (292)
313 PRK10422 lipopolysaccharide co 40.0 1.9E+02 0.0042 28.5 9.4 97 305-407 183-287 (352)
314 KOG1209 1-Acyl dihydroxyaceton 39.9 48 0.001 30.1 4.3 39 1-46 1-39 (289)
315 cd01425 RPS2 Ribosomal protein 39.6 2.4E+02 0.0052 25.2 9.0 33 123-155 127-161 (193)
316 TIGR03878 thermo_KaiC_2 KaiC d 39.5 2.2E+02 0.0048 26.8 9.2 38 11-48 37-74 (259)
317 TIGR00725 conserved hypothetic 39.5 78 0.0017 27.4 5.6 99 292-409 20-123 (159)
318 TIGR00118 acolac_lg acetolacta 39.4 2.1E+02 0.0046 30.4 10.1 27 382-408 65-97 (558)
319 TIGR00421 ubiX_pad polyprenyl 39.4 43 0.00094 29.7 4.1 42 12-54 1-42 (181)
320 PRK03372 ppnK inorganic polyph 39.3 62 0.0013 31.4 5.4 57 376-453 69-129 (306)
321 PLN02935 Bifunctional NADH kin 39.3 60 0.0013 33.7 5.5 55 378-453 261-319 (508)
322 PRK10964 ADP-heptose:LPS hepto 39.1 87 0.0019 30.5 6.7 29 123-153 253-281 (322)
323 PRK06849 hypothetical protein; 38.8 60 0.0013 32.7 5.6 35 10-48 4-38 (389)
324 COG1066 Sms Predicted ATP-depe 38.7 59 0.0013 32.7 5.1 104 11-152 94-218 (456)
325 PF02558 ApbA: Ketopantoate re 38.6 58 0.0012 27.5 4.7 29 28-56 11-39 (151)
326 cd07037 TPP_PYR_MenD Pyrimidin 38.6 78 0.0017 27.5 5.5 26 384-409 63-94 (162)
327 PRK06276 acetolactate synthase 38.5 1.7E+02 0.0038 31.3 9.3 26 383-408 65-96 (586)
328 PRK14478 nitrogenase molybdenu 38.5 1.9E+02 0.0041 30.1 9.3 24 123-149 393-416 (475)
329 TIGR02193 heptsyl_trn_I lipopo 38.5 1E+02 0.0022 29.9 7.0 98 10-152 179-281 (319)
330 TIGR00416 sms DNA repair prote 38.4 1.2E+02 0.0025 31.4 7.6 43 12-54 96-138 (454)
331 PF02776 TPP_enzyme_N: Thiamin 38.4 1.1E+02 0.0025 26.5 6.7 29 379-409 64-98 (172)
332 PF02056 Glyco_hydro_4: Family 38.3 2.9E+02 0.0062 24.6 9.8 118 22-158 39-174 (183)
333 CHL00072 chlL photochlorophyll 38.2 58 0.0012 31.4 5.1 38 11-48 1-38 (290)
334 cd02065 B12-binding_like B12 b 38.1 78 0.0017 25.5 5.3 41 13-53 2-42 (125)
335 PF10933 DUF2827: Protein of u 37.8 1.7E+02 0.0037 28.9 8.0 104 363-490 253-363 (364)
336 PF07991 IlvN: Acetohydroxy ac 37.7 49 0.0011 28.7 3.9 42 10-56 4-47 (165)
337 PRK11914 diacylglycerol kinase 37.6 1.1E+02 0.0024 29.5 7.1 81 307-409 12-96 (306)
338 CHL00175 minD septum-site dete 37.5 3.6E+02 0.0078 25.5 11.8 38 11-48 15-54 (281)
339 PRK13869 plasmid-partitioning 37.3 66 0.0014 32.7 5.6 41 8-48 118-160 (405)
340 PF02374 ArsA_ATPase: Anion-tr 37.1 52 0.0011 32.0 4.6 41 11-51 1-42 (305)
341 cd07025 Peptidase_S66 LD-Carbo 37.0 75 0.0016 30.4 5.6 75 317-410 45-121 (282)
342 PF02702 KdpD: Osmosensitive K 37.0 62 0.0013 29.2 4.5 38 10-47 5-42 (211)
343 PLN03064 alpha,alpha-trehalose 36.7 1.9E+02 0.0042 32.8 9.4 104 370-493 447-562 (934)
344 TIGR02113 coaC_strep phosphopa 36.7 55 0.0012 28.9 4.3 40 12-52 2-41 (177)
345 PRK10353 3-methyl-adenine DNA 36.6 1.1E+02 0.0023 27.3 6.0 63 406-471 22-98 (187)
346 PRK00881 purH bifunctional pho 36.5 1.6E+02 0.0034 30.8 8.0 45 24-80 14-60 (513)
347 PRK06029 3-octaprenyl-4-hydrox 36.4 71 0.0015 28.4 5.0 44 11-55 2-46 (185)
348 PF06506 PrpR_N: Propionate ca 36.2 52 0.0011 28.9 4.1 30 380-410 33-62 (176)
349 PF01695 IstB_IS21: IstB-like 36.2 63 0.0014 28.5 4.6 45 10-54 47-91 (178)
350 PF08323 Glyco_transf_5: Starc 36.1 29 0.00063 32.4 2.6 24 25-48 20-43 (245)
351 TIGR01281 DPOR_bchL light-inde 36.0 63 0.0014 30.5 5.0 36 11-46 1-36 (268)
352 PRK14098 glycogen synthase; Pr 35.9 64 0.0014 33.7 5.4 38 11-48 6-49 (489)
353 PRK02649 ppnK inorganic polyph 35.9 74 0.0016 30.9 5.4 56 377-453 66-125 (305)
354 cd01424 MGS_CPS_II Methylglyox 35.8 2.2E+02 0.0048 22.5 9.5 84 22-149 10-100 (110)
355 PRK09165 replicative DNA helic 35.7 2.3E+02 0.005 29.7 9.4 44 12-55 219-277 (497)
356 PRK05784 phosphoribosylamine-- 35.7 1.4E+02 0.003 31.2 7.7 31 11-46 1-33 (486)
357 PRK05636 replicative DNA helic 35.6 1E+02 0.0022 32.4 6.7 45 11-55 266-311 (505)
358 COG3340 PepE Peptidase E [Amin 35.4 2.3E+02 0.005 25.8 7.9 46 292-338 21-66 (224)
359 cd01018 ZntC Metal binding pro 35.3 3.9E+02 0.0084 25.2 10.2 44 104-153 204-249 (266)
360 PLN02891 IMP cyclohydrolase 35.3 2.3E+02 0.005 29.7 8.8 56 10-80 21-78 (547)
361 PF05225 HTH_psq: helix-turn-h 35.2 69 0.0015 21.0 3.5 26 438-465 1-26 (45)
362 COG0240 GpsA Glycerol-3-phosph 35.1 85 0.0018 30.7 5.6 33 11-48 2-34 (329)
363 cd02032 Bchl_like This family 35.1 65 0.0014 30.4 4.9 37 11-47 1-37 (267)
364 COG1663 LpxK Tetraacyldisaccha 35.1 91 0.002 30.5 5.7 31 16-46 55-85 (336)
365 PRK08309 short chain dehydroge 35.0 3.1E+02 0.0068 24.0 10.3 29 14-46 3-31 (177)
366 PF14626 RNase_Zc3h12a_2: Zc3h 34.8 39 0.00085 27.3 2.7 30 24-53 9-38 (122)
367 PRK12311 rpsB 30S ribosomal pr 34.7 2E+02 0.0044 28.2 8.1 34 123-156 152-187 (326)
368 TIGR00745 apbA_panE 2-dehydrop 34.6 48 0.001 31.7 3.9 28 29-56 5-32 (293)
369 cd01141 TroA_d Periplasmic bin 34.3 60 0.0013 28.5 4.3 29 123-151 69-99 (186)
370 TIGR00521 coaBC_dfp phosphopan 34.3 72 0.0016 32.2 5.2 44 10-54 3-46 (390)
371 PRK13057 putative lipid kinase 33.9 67 0.0015 30.8 4.8 30 378-409 49-82 (287)
372 PRK08322 acetolactate synthase 33.8 1.6E+02 0.0035 31.1 8.2 27 382-408 64-96 (547)
373 COG0299 PurN Folate-dependent 33.5 2.5E+02 0.0054 25.2 7.6 119 321-467 66-186 (200)
374 COG2109 BtuR ATP:corrinoid ade 33.5 3.5E+02 0.0077 24.2 10.8 99 12-134 30-133 (198)
375 PRK07206 hypothetical protein; 33.3 1.6E+02 0.0035 29.8 7.8 33 11-48 3-35 (416)
376 PRK11269 glyoxylate carboligas 33.0 2.4E+02 0.0052 30.3 9.3 27 382-408 69-101 (591)
377 TIGR00147 lipid kinase, YegS/R 32.9 96 0.0021 29.7 5.7 28 380-409 58-91 (293)
378 PRK13059 putative lipid kinase 32.9 1.1E+02 0.0024 29.5 6.1 29 379-409 56-90 (295)
379 PF03808 Glyco_tran_WecB: Glyc 32.8 3.3E+02 0.0072 23.7 11.3 96 27-156 37-137 (172)
380 PRK13011 formyltetrahydrofolat 32.8 4.5E+02 0.0098 25.2 10.4 111 5-153 84-196 (286)
381 TIGR01182 eda Entner-Doudoroff 32.7 3.8E+02 0.0082 24.3 9.4 27 123-149 80-106 (204)
382 PF04244 DPRP: Deoxyribodipyri 32.6 66 0.0014 29.6 4.2 25 23-47 47-71 (224)
383 TIGR00313 cobQ cobyric acid sy 32.5 5.9E+02 0.013 26.5 12.5 27 21-47 10-36 (475)
384 PF10727 Rossmann-like: Rossma 32.3 97 0.0021 25.7 4.8 43 1-48 1-43 (127)
385 PF00148 Oxidored_nitro: Nitro 32.3 3.8E+02 0.0082 26.9 10.3 27 123-152 341-367 (398)
386 cd01968 Nitrogenase_NifE_I Nit 32.3 3.4E+02 0.0073 27.6 9.8 25 123-150 356-380 (410)
387 TIGR01918 various_sel_PB selen 32.2 92 0.002 31.4 5.4 46 384-431 347-394 (431)
388 PRK00207 sulfur transfer compl 32.2 98 0.0021 25.6 4.9 34 11-44 1-38 (128)
389 PRK04761 ppnK inorganic polyph 32.1 39 0.00084 31.6 2.7 28 380-409 26-57 (246)
390 cd02037 MRP-like MRP (Multiple 32.1 1.6E+02 0.0035 25.3 6.6 31 17-47 7-37 (169)
391 TIGR01917 gly_red_sel_B glycin 32.0 92 0.002 31.4 5.3 26 384-409 347-372 (431)
392 PRK06270 homoserine dehydrogen 31.8 2.9E+02 0.0063 27.2 9.0 59 372-431 80-150 (341)
393 PF08766 DEK_C: DEK C terminal 31.6 1.7E+02 0.0037 19.9 5.7 50 438-489 1-51 (54)
394 PF02826 2-Hacid_dh_C: D-isome 31.6 3.2E+02 0.0069 23.9 8.4 105 304-447 36-142 (178)
395 TIGR02482 PFKA_ATP 6-phosphofr 31.6 49 0.0011 32.1 3.3 39 376-414 86-128 (301)
396 PRK14076 pnk inorganic polypho 31.5 82 0.0018 33.6 5.4 54 379-453 348-405 (569)
397 TIGR03880 KaiC_arch_3 KaiC dom 31.4 2.6E+02 0.0056 25.4 8.1 45 12-56 18-62 (224)
398 PRK08229 2-dehydropantoate 2-r 31.4 73 0.0016 31.3 4.7 33 11-48 3-35 (341)
399 COG0503 Apt Adenine/guanine ph 31.3 89 0.0019 27.6 4.7 37 108-150 44-82 (179)
400 PLN02172 flavin-containing mon 31.2 62 0.0013 33.5 4.3 41 1-46 1-41 (461)
401 PRK08116 hypothetical protein; 31.2 4.6E+02 0.01 24.8 10.0 37 13-49 117-153 (268)
402 TIGR00345 arsA arsenite-activa 31.2 1.7E+02 0.0037 28.0 7.1 23 28-50 3-25 (284)
403 PF13450 NAD_binding_8: NAD(P) 31.0 59 0.0013 23.4 3.0 21 27-47 8-28 (68)
404 COG2099 CobK Precorrin-6x redu 31.0 75 0.0016 29.7 4.2 108 27-152 117-230 (257)
405 cd01017 AdcA Metal binding pro 30.9 4.1E+02 0.009 25.2 9.7 43 104-152 207-251 (282)
406 PRK07114 keto-hydroxyglutarate 30.8 4.3E+02 0.0092 24.3 9.2 29 123-151 91-119 (222)
407 cd00764 Eukaryotic_PFK Phospho 30.6 89 0.0019 34.5 5.5 123 2-150 381-514 (762)
408 PRK01185 ppnK inorganic polyph 30.5 98 0.0021 29.5 5.2 54 379-453 52-106 (271)
409 TIGR03453 partition_RepA plasm 30.5 98 0.0021 31.2 5.5 42 7-48 100-143 (387)
410 PF00289 CPSase_L_chain: Carba 30.4 39 0.00086 27.1 2.1 69 320-398 11-89 (110)
411 PRK11199 tyrA bifunctional cho 30.4 5E+02 0.011 26.0 10.5 32 10-46 98-130 (374)
412 TIGR02699 archaeo_AfpA archaeo 30.3 94 0.002 27.4 4.6 41 13-54 2-44 (174)
413 PLN02695 GDP-D-mannose-3',5'-e 30.3 1.1E+02 0.0024 30.5 5.9 35 8-46 19-53 (370)
414 PRK07773 replicative DNA helic 30.1 2.5E+02 0.0055 31.9 9.2 45 12-56 219-264 (886)
415 PRK06456 acetolactate synthase 29.9 3.5E+02 0.0077 28.8 10.0 25 384-408 71-101 (572)
416 PRK05647 purN phosphoribosylgl 29.7 4.2E+02 0.0091 23.8 10.1 32 11-45 2-35 (200)
417 PRK03501 ppnK inorganic polyph 29.7 1.2E+02 0.0026 28.7 5.6 55 379-453 39-98 (264)
418 PRK06048 acetolactate synthase 29.5 3.1E+02 0.0067 29.2 9.4 28 379-408 70-103 (561)
419 PRK05282 (alpha)-aspartyl dipe 29.5 2.7E+02 0.0058 25.8 7.7 44 294-339 23-66 (233)
420 TIGR02990 ectoine_eutA ectoine 29.4 3.5E+02 0.0075 25.2 8.5 104 24-151 105-213 (239)
421 PF08433 KTI12: Chromatin asso 29.3 4.5E+02 0.0098 24.9 9.5 104 13-160 4-113 (270)
422 cd08551 Fe-ADH iron-containing 29.2 97 0.0021 31.0 5.2 33 305-339 24-56 (370)
423 PF02780 Transketolase_C: Tran 29.1 96 0.0021 25.2 4.4 35 10-46 9-43 (124)
424 PF13419 HAD_2: Haloacid dehal 29.1 3.5E+02 0.0075 22.7 9.0 27 123-150 150-176 (176)
425 PF05728 UPF0227: Uncharacteri 29.0 1.1E+02 0.0025 27.2 5.1 30 125-154 61-91 (187)
426 cd03114 ArgK-like The function 29.0 3.6E+02 0.0077 22.8 10.2 35 13-47 2-36 (148)
427 cd00861 ProRS_anticodon_short 28.9 1.1E+02 0.0025 23.1 4.6 35 11-45 2-38 (94)
428 COG1422 Predicted membrane pro 28.9 2E+02 0.0043 25.8 6.3 80 393-487 24-104 (201)
429 PF01081 Aldolase: KDPG and KH 28.9 4.3E+02 0.0093 23.7 9.3 32 123-154 80-111 (196)
430 PRK06882 acetolactate synthase 28.8 3.6E+02 0.0077 28.8 9.7 27 382-408 68-100 (574)
431 cd07062 Peptidase_S66_mccF_lik 28.6 1.2E+02 0.0027 29.4 5.7 74 317-409 49-124 (308)
432 PRK02645 ppnK inorganic polyph 28.6 48 0.001 32.2 2.8 29 379-409 57-89 (305)
433 PTZ00318 NADH dehydrogenase-li 28.5 74 0.0016 32.5 4.3 44 1-49 1-44 (424)
434 PRK13055 putative lipid kinase 28.4 1.6E+02 0.0034 29.0 6.4 28 380-409 60-93 (334)
435 cd07766 DHQ_Fe-ADH Dehydroquin 28.4 1.2E+02 0.0027 29.6 5.8 96 293-411 12-114 (332)
436 cd01976 Nitrogenase_MoFe_alpha 28.4 60 0.0013 33.2 3.6 37 106-151 358-394 (421)
437 PRK07586 hypothetical protein; 28.3 3.4E+02 0.0074 28.4 9.4 25 385-409 68-98 (514)
438 PRK05579 bifunctional phosphop 28.2 1.3E+02 0.0029 30.4 5.9 45 9-54 5-49 (399)
439 COG3349 Uncharacterized conser 28.0 61 0.0013 33.5 3.5 33 11-48 1-33 (485)
440 cd08172 GlyDH-like1 Glycerol d 27.9 3.6E+02 0.0077 26.6 8.9 45 104-154 63-110 (347)
441 cd02072 Glm_B12_BD B12 binding 27.8 1.4E+02 0.0031 24.7 5.0 42 12-53 1-42 (128)
442 COG1748 LYS9 Saccharopine dehy 27.7 4.9E+02 0.011 26.3 9.6 41 11-56 2-44 (389)
443 PF00070 Pyr_redox: Pyridine n 27.6 83 0.0018 23.2 3.4 22 26-47 10-31 (80)
444 COG3195 Uncharacterized protei 27.6 2.1E+02 0.0045 24.8 5.9 96 371-470 63-164 (176)
445 smart00046 DAGKc Diacylglycero 27.5 48 0.001 27.2 2.3 36 384-420 52-96 (124)
446 PRK08266 hypothetical protein; 27.4 4E+02 0.0087 28.1 9.8 25 384-408 71-101 (542)
447 cd00672 CysRS_core catalytic c 27.3 4.8E+02 0.01 23.7 10.2 91 20-147 35-129 (213)
448 TIGR02700 flavo_MJ0208 archaeo 27.3 1E+02 0.0023 28.5 4.7 42 12-53 1-44 (234)
449 cd08194 Fe-ADH6 Iron-containin 27.3 1.1E+02 0.0023 30.7 5.2 33 305-339 24-56 (375)
450 PRK14619 NAD(P)H-dependent gly 27.2 66 0.0014 31.2 3.5 33 10-47 4-36 (308)
451 PRK04328 hypothetical protein; 27.1 4.4E+02 0.0096 24.5 9.0 45 11-55 24-68 (249)
452 PF01297 TroA: Periplasmic sol 26.8 2.3E+02 0.005 26.4 7.1 44 104-153 186-231 (256)
453 PF06564 YhjQ: YhjQ protein; 26.6 1.1E+02 0.0023 28.7 4.5 35 12-46 2-38 (243)
454 COG0504 PyrG CTP synthase (UTP 26.6 1.3E+02 0.0028 31.0 5.3 41 11-51 1-44 (533)
455 PF05693 Glycogen_syn: Glycoge 26.6 1.1E+02 0.0024 32.5 5.1 92 372-469 462-566 (633)
456 cd02034 CooC The accessory pro 26.4 1.5E+02 0.0032 24.0 4.9 37 12-48 1-37 (116)
457 TIGR03845 sulfopyru_alph sulfo 26.3 1.9E+02 0.004 24.9 5.8 27 384-410 62-93 (157)
458 PRK02231 ppnK inorganic polyph 26.3 67 0.0014 30.6 3.2 58 373-451 36-97 (272)
459 cd08171 GlyDH-like2 Glycerol d 26.2 5.2E+02 0.011 25.4 9.8 32 123-154 78-112 (345)
460 PRK06719 precorrin-2 dehydroge 26.2 99 0.0022 26.6 4.1 33 10-47 13-45 (157)
461 TIGR00750 lao LAO/AO transport 26.2 3.5E+02 0.0076 26.1 8.3 39 10-48 33-72 (300)
462 PRK09423 gldA glycerol dehydro 26.2 5.1E+02 0.011 25.8 9.8 32 123-154 84-118 (366)
463 cd00763 Bacterial_PFK Phosphof 26.1 68 0.0015 31.3 3.3 38 376-413 87-127 (317)
464 PRK06731 flhF flagellar biosyn 25.7 5.8E+02 0.013 24.2 10.1 41 10-50 75-115 (270)
465 COG0059 IlvC Ketol-acid reduct 25.5 1.2E+02 0.0026 29.3 4.6 52 9-75 17-70 (338)
466 PF06418 CTP_synth_N: CTP synt 25.2 91 0.002 29.4 3.8 40 11-50 1-43 (276)
467 PLN02778 3,5-epimerase/4-reduc 24.9 1.2E+02 0.0026 29.1 4.9 39 1-44 1-39 (298)
468 PF05762 VWA_CoxE: VWA domain 24.9 1.5E+02 0.0032 27.2 5.2 38 10-47 150-188 (222)
469 COG0279 GmhA Phosphoheptose is 24.8 2.9E+02 0.0062 24.1 6.3 47 457-503 22-77 (176)
470 KOG0081 GTPase Rab27, small G 24.6 1.5E+02 0.0032 25.5 4.5 49 107-157 110-168 (219)
471 PTZ00345 glycerol-3-phosphate 24.5 1.7E+02 0.0037 29.2 5.9 36 8-48 9-51 (365)
472 PF00282 Pyridoxal_deC: Pyrido 24.5 1.3E+02 0.0028 30.2 5.1 69 382-452 104-191 (373)
473 TIGR01990 bPGM beta-phosphoglu 24.5 4.6E+02 0.0099 22.6 8.4 24 125-150 161-184 (185)
474 TIGR02483 PFK_mixed phosphofru 24.5 79 0.0017 31.0 3.4 37 376-412 89-128 (324)
475 COG0801 FolK 7,8-dihydro-6-hyd 24.4 1.5E+02 0.0033 25.6 4.7 29 307-335 3-31 (160)
476 TIGR00730 conserved hypothetic 24.3 2.2E+02 0.0047 25.2 5.9 100 294-407 23-132 (178)
477 PRK00885 phosphoribosylamine-- 24.3 2.2E+02 0.0048 28.9 6.9 30 11-45 1-31 (420)
478 TIGR00064 ftsY signal recognit 24.2 1.6E+02 0.0035 28.0 5.4 39 12-50 74-112 (272)
479 TIGR01917 gly_red_sel_B glycin 24.2 1.5E+02 0.0032 30.1 5.2 47 106-158 325-378 (431)
480 PRK02910 light-independent pro 23.9 1.2E+02 0.0026 32.1 4.9 26 123-151 362-387 (519)
481 PRK06466 acetolactate synthase 23.9 5.3E+02 0.011 27.5 10.0 26 383-408 69-100 (574)
482 PRK13234 nifH nitrogenase redu 23.7 1.4E+02 0.0031 28.7 5.1 39 10-48 3-42 (295)
483 COG0028 IlvB Thiamine pyrophos 23.7 4.3E+02 0.0093 28.1 9.0 84 294-390 192-275 (550)
484 TIGR02853 spore_dpaA dipicolin 23.7 1E+02 0.0022 29.6 4.0 101 28-148 14-117 (287)
485 COG2874 FlaH Predicted ATPases 23.7 4.6E+02 0.0099 24.1 7.7 30 20-49 38-67 (235)
486 PLN02293 adenine phosphoribosy 23.7 2.5E+02 0.0055 25.0 6.3 28 123-150 62-91 (187)
487 PRK05579 bifunctional phosphop 23.6 7E+02 0.015 25.3 10.1 139 304-451 6-182 (399)
488 TIGR01278 DPOR_BchB light-inde 23.6 1.2E+02 0.0026 32.0 4.8 27 123-152 364-390 (511)
489 cd08551 Fe-ADH iron-containing 23.3 7.4E+02 0.016 24.6 10.4 22 27-48 11-33 (370)
490 COG1893 ApbA Ketopantoate redu 23.3 1.5E+02 0.0032 28.8 5.1 49 11-74 1-49 (307)
491 PRK07525 sulfoacetaldehyde ace 23.3 3.8E+02 0.0083 28.7 8.8 27 382-408 69-101 (588)
492 PF04493 Endonuclease_5: Endon 23.2 1.1E+02 0.0023 27.9 3.8 41 104-151 77-124 (206)
493 PRK08527 acetolactate synthase 22.9 5.4E+02 0.012 27.4 9.8 27 382-408 67-99 (563)
494 PRK08978 acetolactate synthase 22.9 3.8E+02 0.0082 28.4 8.6 28 379-408 63-96 (548)
495 PRK04940 hypothetical protein; 22.9 1.1E+02 0.0023 27.2 3.6 32 123-154 60-92 (180)
496 PRK14071 6-phosphofructokinase 22.9 85 0.0018 31.3 3.4 38 375-412 101-142 (360)
497 cd06559 Endonuclease_V Endonuc 22.8 99 0.0021 28.1 3.5 41 104-151 81-128 (208)
498 TIGR00877 purD phosphoribosyla 22.8 4E+02 0.0088 27.0 8.5 35 11-50 1-35 (423)
499 PRK03202 6-phosphofructokinase 22.7 84 0.0018 30.7 3.3 38 376-413 88-128 (320)
500 PRK14075 pnk inorganic polypho 22.7 76 0.0016 29.9 2.9 54 379-453 41-95 (256)
No 1
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=7.6e-67 Score=528.67 Aligned_cols=461 Identities=32% Similarity=0.600 Sum_probs=358.8
Q ss_pred CCCCCCCCCCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHHhhh-c-CC--CCCCCCCeeEEeCCCC
Q 010684 1 MESKPKACSKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKAR-G-QH--SLDGLPSFRFEAIPDG 76 (504)
Q Consensus 1 ~~~~~~~~~~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~-~-~~--~~~~~~~i~~~~l~~~ 76 (504)
|+|-+- +.||+++|+|++||++|++.||+.|+.+|..|||++++.+...+.+.. . +. .......++|..++++
T Consensus 1 ~~~~~~---~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdg 77 (480)
T PLN02555 1 MESESS---LVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDG 77 (480)
T ss_pred CCCCCC---CCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCC
Confidence 555433 679999999999999999999999999999999999998777654311 0 00 0011224778778888
Q ss_pred CCCCCCCCCCcccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEccccHH
Q 010684 77 LPASSDESPTAQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISAC 156 (504)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 156 (504)
+|.+.+ ...++..++..+...+ .+.++++++++... ...++|||+|.++.|+..+|+++|||++.++++++.
T Consensus 78 lp~~~~---~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~----~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~ 149 (480)
T PLN02555 78 WAEDDP---RRQDLDLYLPQLELVG-KREIPNLVKRYAEQ----GRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCA 149 (480)
T ss_pred CCCCcc---cccCHHHHHHHHHHhh-hHHHHHHHHHHhcc----CCCceEEEECCcchHHHHHHHHcCCCeEEeecccHH
Confidence 876632 1234455666665566 78889988876422 123499999999999999999999999999999998
Q ss_pred HHHhHhhhhhhhhcCCCCccccccccchhhhhcccccccCCCCCCCCCCCCCcccccCCCchhHHHHHHHHhhhcccCcE
Q 010684 157 SFMGFKQFQTFKEKGLFPVKVLADKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASA 236 (504)
Q Consensus 157 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (504)
.+..+.++. .+..+.......+ ....+|+++.++..+++.++......+...+.+.+.......++.
T Consensus 150 ~~~~~~~~~----~~~~~~~~~~~~~---------~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 216 (480)
T PLN02555 150 CFSAYYHYY----HGLVPFPTETEPE---------IDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFC 216 (480)
T ss_pred HHHHHHHHh----hcCCCcccccCCC---------ceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCE
Confidence 888776653 2222211000000 123478888788888887654322233444445555566677889
Q ss_pred EEEcChhhhhHHHHHHHhhhCCCceeeeCccccccccchhccccccccCCCccccchhhhccccCCCCCeeEEEecCCcc
Q 010684 237 IIIHTFDALEQQVLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFI 316 (504)
Q Consensus 237 ~l~~s~~~le~~~~~~~~~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~ 316 (504)
+++|||.+||+.+++.++... + ++.|||+......... ..+.+.|+.+++|.+|||.++.+++|||||||+.
T Consensus 217 vlvNTf~eLE~~~~~~l~~~~-~-v~~iGPl~~~~~~~~~------~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~ 288 (480)
T PLN02555 217 ILIDTFQELEKEIIDYMSKLC-P-IKPVGPLFKMAKTPNS------DVKGDISKPADDCIEWLDSKPPSSVVYISFGTVV 288 (480)
T ss_pred EEEEchHHHhHHHHHHHhhCC-C-EEEeCcccCccccccc------cccccccccchhHHHHHhCCCCCceeEEEecccc
Confidence 999999999999999887654 4 9999999753211000 1111224456789999999988899999999999
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEEcCCCCC--CCCCCCchHHHHhhccCcEEEeecchHhhhcCCCcceEEecCCchhH
Q 010684 317 FMNKQQLIEVAMGLVNSNHPFLWIIRPDLVT--GETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSI 394 (504)
Q Consensus 317 ~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~I~HGG~gs~ 394 (504)
..+.+.+.+++.+++.++++|||+++..... .....+|+++.++.++|+++.+|+||.+||.|+++++|||||||||+
T Consensus 289 ~~~~~q~~ela~~l~~~~~~flW~~~~~~~~~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~ 368 (480)
T PLN02555 289 YLKQEQIDEIAYGVLNSGVSFLWVMRPPHKDSGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNST 368 (480)
T ss_pred CCCHHHHHHHHHHHHhcCCeEEEEEecCcccccchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchH
Confidence 8899999999999999999999998743111 11235788888888999999999999999999999999999999999
Q ss_pred HHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecC---CCCCccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Q 010684 395 VESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEING---DDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEE 471 (504)
Q Consensus 395 ~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~---~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~ 471 (504)
+||+++|||||++|+++||+.||+++++.||+|+.+.. .+..++.++|+++|+++|.+++|+.+|+||++|++++++
T Consensus 369 ~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~ 448 (480)
T PLN02555 369 MEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEA 448 (480)
T ss_pred HHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999788899999941 014689999999999999988899999999999999999
Q ss_pred HhCCCCChHHHHHHHHHHHHhc
Q 010684 472 AAAPHGSSSLNLDKLVNEILLS 493 (504)
Q Consensus 472 ~~~~~g~~~~~~~~~~~~~~~~ 493 (504)
++.+||||..++++||+++.+.
T Consensus 449 A~~egGSS~~~l~~~v~~i~~~ 470 (480)
T PLN02555 449 AVAEGGSSDRNFQEFVDKLVRK 470 (480)
T ss_pred HhcCCCcHHHHHHHHHHHHHhc
Confidence 9999999999999999999875
No 2
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=8.3e-67 Score=526.71 Aligned_cols=442 Identities=34% Similarity=0.633 Sum_probs=346.8
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCCCCcc
Q 010684 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTAQ 88 (504)
Q Consensus 9 ~~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~ 88 (504)
++.||+++|++++||++|++.||+.|+.+|+.|||++++.+... . . ...+++++..+|+++|++. .+..
T Consensus 6 ~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~---~---~--~~~~~i~~~~ip~glp~~~--~~~~- 74 (451)
T PLN02410 6 ARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFS---P---S--DDFTDFQFVTIPESLPESD--FKNL- 74 (451)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccc---c---c--cCCCCeEEEeCCCCCCccc--cccc-
Confidence 47899999999999999999999999999999999999876421 1 0 1123799999998887641 1111
Q ss_pred cHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEccccHHHHHhHhhhhhhh
Q 010684 89 DAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTFK 168 (504)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 168 (504)
....++..+...+ .+.++++++.+... ...+++|||+|.++.|+..+|+++|||++.+++++++.+..+.++....
T Consensus 75 ~~~~~~~~~~~~~-~~~~~~~L~~l~~~---~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~ 150 (451)
T PLN02410 75 GPIEFLHKLNKEC-QVSFKDCLGQLVLQ---QGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLY 150 (451)
T ss_pred CHHHHHHHHHHHh-HHHHHHHHHHHHhc---cCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHH
Confidence 2335556555566 77888888776421 0126799999999999999999999999999999999887766544332
Q ss_pred hcCC-CCccccccccchhhhhcccccccCCCCCCCCCCCCCcccccCCCchhHHHHHHHHhhhcccCcEEEEcChhhhhH
Q 010684 169 EKGL-FPVKVLADKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALEQ 247 (504)
Q Consensus 169 ~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~ 247 (504)
..+. .|.... ..+ ....+|+++.++..+++..... ........+.... ....++.+++|||+++|+
T Consensus 151 ~~~~~~~~~~~-~~~---------~~~~iPg~~~~~~~dlp~~~~~--~~~~~~~~~~~~~-~~~~~~~vlvNTf~eLE~ 217 (451)
T PLN02410 151 ANNVLAPLKEP-KGQ---------QNELVPEFHPLRCKDFPVSHWA--SLESIMELYRNTV-DKRTASSVIINTASCLES 217 (451)
T ss_pred hccCCCCcccc-ccC---------ccccCCCCCCCChHHCcchhcC--CcHHHHHHHHHHh-hcccCCEEEEeChHHhhH
Confidence 2211 121100 000 1234778777776677654321 1122222232222 346788999999999999
Q ss_pred HHHHHHhhhCCCceeeeCccccccccchhccccccccCCCccccchhhhccccCCCCCeeEEEecCCccccCHHHHHHHH
Q 010684 248 QVLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVA 327 (504)
Q Consensus 248 ~~~~~~~~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~ 327 (504)
.++++++...+.+++.|||++..... .. ..++...+|.+|||.++.++||||||||....+.+.+.+++
T Consensus 218 ~~~~~l~~~~~~~v~~vGpl~~~~~~-~~----------~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela 286 (451)
T PLN02410 218 SSLSRLQQQLQIPVYPIGPLHLVASA-PT----------SLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETA 286 (451)
T ss_pred HHHHHHHhccCCCEEEecccccccCC-Cc----------cccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHH
Confidence 99999987664349999999864211 00 11233457899999998899999999999999999999999
Q ss_pred HHHHhCCCCEEEEEcCCCCCCC--CCCCchHHHHhhccCcEEEeecchHhhhcCCCcceEEecCCchhHHHhhhcCCcEE
Q 010684 328 MGLVNSNHPFLWIIRPDLVTGE--TADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMI 405 (504)
Q Consensus 328 ~a~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v 405 (504)
.+|+.++++|||+++.....+. ...+|++|.+|.++|+++++|+||.+||+|+++++|||||||||++||+++|||||
T Consensus 287 ~gLe~s~~~FlWv~r~~~~~~~~~~~~lp~~f~er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l 366 (451)
T PLN02410 287 SGLDSSNQQFLWVIRPGSVRGSEWIESLPKEFSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMI 366 (451)
T ss_pred HHHHhcCCCeEEEEccCcccccchhhcCChhHHHhccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEE
Confidence 9999999999999984321111 12478999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhCCCCChHHHHHH
Q 010684 406 CWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDK 485 (504)
Q Consensus 406 ~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~ 485 (504)
++|+++||+.||+++++.+|+|+.+. ..+++++|+++|+++|.+++|++||++|+++++++++++.+||||..++++
T Consensus 367 ~~P~~~DQ~~na~~~~~~~~~G~~~~---~~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~ 443 (451)
T PLN02410 367 CKPFSSDQKVNARYLECVWKIGIQVE---GDLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEE 443 (451)
T ss_pred eccccccCHHHHHHHHHHhCeeEEeC---CcccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 99999999999999977889999997 579999999999999998888999999999999999999999999999999
Q ss_pred HHHHHHh
Q 010684 486 LVNEILL 492 (504)
Q Consensus 486 ~~~~~~~ 492 (504)
||+.++.
T Consensus 444 fv~~~~~ 450 (451)
T PLN02410 444 FVHFMRT 450 (451)
T ss_pred HHHHHHh
Confidence 9999864
No 3
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=1.2e-65 Score=519.88 Aligned_cols=440 Identities=27% Similarity=0.517 Sum_probs=343.1
Q ss_pred CCCCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCCCC
Q 010684 7 ACSKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPT 86 (504)
Q Consensus 7 ~~~~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~ 86 (504)
++++.||+++|+|++||++|++.||+.|+.+|++||+++++.+...+..... ..+++++..+|++++.+ .
T Consensus 3 ~~~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~-----~~~~i~~v~lp~g~~~~---~-- 72 (448)
T PLN02562 3 VTQRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLD-----PKLGITFMSISDGQDDD---P-- 72 (448)
T ss_pred CCCCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccC-----CCCCEEEEECCCCCCCC---c--
Confidence 4457799999999999999999999999999999999999988776654311 11369999999876543 1
Q ss_pred cccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEccccHHHHHhHhhhhh
Q 010684 87 AQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQT 166 (504)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 166 (504)
..++..++..+...+ .+.++++++++... ..++|||+|.+..|+..+|+++|||++.++++++..+..+.+.+.
T Consensus 73 ~~~~~~l~~a~~~~~-~~~l~~ll~~l~~~-----~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~ 146 (448)
T PLN02562 73 PRDFFSIENSMENTM-PPQLERLLHKLDED-----GEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPE 146 (448)
T ss_pred cccHHHHHHHHHHhc-hHHHHHHHHHhcCC-----CCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHH
Confidence 123444555554456 78889998887532 145899999999999999999999999999998877776655443
Q ss_pred hhhcCCCCccccccccchhhhhcccccccCCCCCCCCCCCCCcccccCCCchhHHHHHHHHhhhcccCcEEEEcChhhhh
Q 010684 167 FKEKGLFPVKVLADKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALE 246 (504)
Q Consensus 167 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le 246 (504)
....+..+....+... ....++|+++.++..+++.++............+.+..+...+++.+++|||.+||
T Consensus 147 ~~~~~~~~~~~~~~~~--------~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE 218 (448)
T PLN02562 147 LVRTGLISETGCPRQL--------EKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEE 218 (448)
T ss_pred Hhhccccccccccccc--------cccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhC
Confidence 3222221111000000 01235788877888888876533222223344555556667778899999999999
Q ss_pred HHHHHHHh-----hhCCCceeeeCccccccccchhccccccccCCCccccchhhhccccCCCCCeeEEEecCCcc-ccCH
Q 010684 247 QQVLNALS-----FMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFI-FMNK 320 (504)
Q Consensus 247 ~~~~~~~~-----~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~-~~~~ 320 (504)
+.+++..+ +..|+ ++.|||++........ ..+.|+.+.+|.+|||+++.+++|||||||.. ..+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~-v~~iGpl~~~~~~~~~--------~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~ 289 (448)
T PLN02562 219 YDDVKNHQASYNNGQNPQ-ILQIGPLHNQEATTIT--------KPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGE 289 (448)
T ss_pred HHHHHHHHhhhccccCCC-EEEecCcccccccccC--------CCccccchHHHHHHHhcCCCCceEEEEecccccCCCH
Confidence 98888664 33565 9999999864311000 00123345678999999988899999999986 6788
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHhhccCcEEEeecchHhhhcCCCcceEEecCCchhHHHhhhc
Q 010684 321 QQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCS 400 (504)
Q Consensus 321 ~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~I~HGG~gs~~eal~~ 400 (504)
+++..++.+++++|++|||++.... ...++++|.++.++|+++.+|+||.+||+|+++++|||||||||++||+++
T Consensus 290 ~~~~~l~~~l~~~g~~fiW~~~~~~----~~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~ 365 (448)
T PLN02562 290 SNVRTLALALEASGRPFIWVLNPVW----REGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQC 365 (448)
T ss_pred HHHHHHHHHHHHCCCCEEEEEcCCc----hhhCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHc
Confidence 9999999999999999999997431 124788898999999999999999999999999999999999999999999
Q ss_pred CCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhCCCCChH
Q 010684 401 GVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSS 480 (504)
Q Consensus 401 GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~ 480 (504)
|||||++|+++||+.||+++++.+|+|+.+. .++.++|+++|+++|+|+ +||+||+++++++.++ ++||||.
T Consensus 366 GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~----~~~~~~l~~~v~~~l~~~---~~r~~a~~l~~~~~~~-~~gGSS~ 437 (448)
T PLN02562 366 QKRLLCYPVAGDQFVNCAYIVDVWKIGVRIS----GFGQKEVEEGLRKVMEDS---GMGERLMKLRERAMGE-EARLRSM 437 (448)
T ss_pred CCCEEeCCcccchHHHHHHHHHHhCceeEeC----CCCHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHhc-CCCCCHH
Confidence 9999999999999999999966689998886 479999999999999988 8999999999999876 6689999
Q ss_pred HHHHHHHHHHH
Q 010684 481 LNLDKLVNEIL 491 (504)
Q Consensus 481 ~~~~~~~~~~~ 491 (504)
.++++||++++
T Consensus 438 ~nl~~~v~~~~ 448 (448)
T PLN02562 438 MNFTTLKDELK 448 (448)
T ss_pred HHHHHHHHHhC
Confidence 99999999874
No 4
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=6.1e-65 Score=510.67 Aligned_cols=435 Identities=31% Similarity=0.539 Sum_probs=341.1
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCCCCccc
Q 010684 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTAQD 89 (504)
Q Consensus 10 ~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 89 (504)
+.||+++|+|++||++|++.||+.|+.+|++|||++++.+...+... ..+++++..+++++|++. .+...+
T Consensus 5 ~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~-------~~~~i~~~~ipdglp~~~--~~~~~~ 75 (449)
T PLN02173 5 RGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD-------PSSPISIATISDGYDQGG--FSSAGS 75 (449)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC-------CCCCEEEEEcCCCCCCcc--cccccC
Confidence 56999999999999999999999999999999999998876544221 113699999999888731 122334
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCe-eEEEEcCCcchHHHHHHHcCCCeEEEccccHHHHHhHhhhhhhh
Q 010684 90 AYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAV-SCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTFK 168 (504)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~-DlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 168 (504)
...++..+...+ .+.++++++.+... .+| +|||+|.++.|+..+|+++|||++.++++++.....+.+.. .
T Consensus 76 ~~~~~~~~~~~~-~~~~~~~l~~~~~~-----~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~~-~- 147 (449)
T PLN02173 76 VPEYLQNFKTFG-SKTVADIIRKHQST-----DNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLSY-I- 147 (449)
T ss_pred HHHHHHHHHHhh-hHHHHHHHHHhhcc-----CCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhHH-h-
Confidence 556777776666 88999999876432 144 99999999999999999999999999998877765443211 0
Q ss_pred hcCCCCccccccccchhhhhcccccccCCCCCCCCCCCCCcccccCCCchhHHHHHHHHhhhcccCcEEEEcChhhhhHH
Q 010684 169 EKGLFPVKVLADKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALEQQ 248 (504)
Q Consensus 169 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~ 248 (504)
..+. ....+|+++.++..+++.++............+.+.......++.+++||+.++|+.
T Consensus 148 ~~~~-------------------~~~~~pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~ 208 (449)
T PLN02173 148 NNGS-------------------LTLPIKDLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLH 208 (449)
T ss_pred ccCC-------------------ccCCCCCCCCCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHH
Confidence 0000 111256777777788887664322222333444445556678899999999999999
Q ss_pred HHHHHhhhCCCceeeeCccccccc--cchhccccccccCCCcc--ccchhhhccccCCCCCeeEEEecCCccccCHHHHH
Q 010684 249 VLNALSFMFPHHLFTIGPLQLLLN--QTEEQDGMLNSIGYNLL--KEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLI 324 (504)
Q Consensus 249 ~~~~~~~~~p~~~~~vGpl~~~~~--~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~ 324 (504)
++++.+.. ++ ++.|||+++... ..... .. ....+.| +.+++|.+|||.++.+++|||||||....+.+++.
T Consensus 209 ~~~~~~~~-~~-v~~VGPl~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ 283 (449)
T PLN02173 209 ENELLSKV-CP-VLTIGPTVPSMYLDQQIKS-DN--DYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQME 283 (449)
T ss_pred HHHHHHhc-CC-eeEEcccCchhhccccccc-cc--cccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHH
Confidence 99998764 44 999999975210 00000 00 0000122 23456999999998899999999999988999999
Q ss_pred HHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHhh-ccCcEEEeecchHhhhcCCCcceEEecCCchhHHHhhhcCCc
Q 010684 325 EVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKA-KEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVP 403 (504)
Q Consensus 325 ~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~nv~~~~~vpq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP 403 (504)
+++.++ .+.+|||++.... ...+|+++.++. ++|+++.+|+||.+||+|+++++|||||||||++||+++|||
T Consensus 284 ela~gL--s~~~flWvvr~~~----~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP 357 (449)
T PLN02173 284 EIASAI--SNFSYLWVVRASE----ESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVP 357 (449)
T ss_pred HHHHHh--cCCCEEEEEeccc----hhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCC
Confidence 999999 6788999997431 134778888877 688999999999999999999999999999999999999999
Q ss_pred EEecCCCCCcchhhhhhhhhcceeEEecCCC--CCccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhCCCCChHH
Q 010684 404 MICWPFTGDQPTNGRYVCNEWGVGMEINGDD--EDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSL 481 (504)
Q Consensus 404 ~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~--~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~ 481 (504)
||++|+++||+.||+++++.||+|+.+...+ ..++.++|+++|+++|.+++|+.+|+||++++++++++.++||||..
T Consensus 358 ~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~ 437 (449)
T PLN02173 358 MVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDI 437 (449)
T ss_pred EEecCchhcchHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 9999999999999999977889999986411 23699999999999999988899999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 010684 482 NLDKLVNEIL 491 (504)
Q Consensus 482 ~~~~~~~~~~ 491 (504)
++++|++++.
T Consensus 438 ~l~~~v~~~~ 447 (449)
T PLN02173 438 NINTFVSKIQ 447 (449)
T ss_pred HHHHHHHHhc
Confidence 9999999885
No 5
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=5.7e-64 Score=505.41 Aligned_cols=449 Identities=26% Similarity=0.431 Sum_probs=335.2
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCC--CeEEEEeCccch-HHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCCC
Q 010684 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKG--FHITFVNTEFNH-RRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESP 85 (504)
Q Consensus 9 ~~~~il~~~~~~~GHi~p~l~LA~~L~~~G--h~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~ 85 (504)
++.||+|+|+|++||++|++.||+.|+.+| ..||+++++.+. ..+.... .......++++|..+|+...... ..
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~-~~~~~~~~~i~~~~lp~~~~~~~--~~ 78 (468)
T PLN02207 2 RNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYV-KSIASSQPFVRFIDVPELEEKPT--LG 78 (468)
T ss_pred CCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhh-hhccCCCCCeEEEEeCCCCCCCc--cc
Confidence 456999999999999999999999999998 999999988765 2222211 11111223699999995432110 01
Q ss_pred CcccHHHHHHHHHHhhcchH----HHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEccccHHHHHhH
Q 010684 86 TAQDAYSLGENIINNVLLHP----FLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMGF 161 (504)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~----~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~ 161 (504)
...+...++......+ .+. +.+++++.... ..+++|||+|.++.|+..+|+++|||++.++++++..+..+
T Consensus 79 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~----~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~ 153 (468)
T PLN02207 79 GTQSVEAYVYDVIEKN-IPLVRNIVMDILSSLALD----GVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMM 153 (468)
T ss_pred cccCHHHHHHHHHHhc-chhHHHHHHHHHHHhccC----CCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHH
Confidence 1223343333232333 343 44444433211 12349999999999999999999999999999999887776
Q ss_pred hhhhhhhhcC-CCCccccccccchhhhhcccccccCCCC-CCCCCCCCCcccccCCCchhHHHHHHHHhhhcccCcEEEE
Q 010684 162 KQFQTFKEKG-LFPVKVLADKSCLTKEYLNSLIDWIPGM-KDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIII 239 (504)
Q Consensus 162 ~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 239 (504)
.+.+...... ..+.. ..+ ....+|++ +.++..+++.++..... ...+.+......+++++++
T Consensus 154 ~~~~~~~~~~~~~~~~---~~~---------~~~~vPgl~~~l~~~dlp~~~~~~~~----~~~~~~~~~~~~~~~~vlv 217 (468)
T PLN02207 154 QYLADRHSKDTSVFVR---NSE---------EMLSIPGFVNPVPANVLPSALFVEDG----YDAYVKLAILFTKANGILV 217 (468)
T ss_pred HHhhhccccccccCcC---CCC---------CeEECCCCCCCCChHHCcchhcCCcc----HHHHHHHHHhcccCCEEEE
Confidence 6553221110 00000 000 12357888 56888888876642221 2233344445678899999
Q ss_pred cChhhhhHHHHHHHh--hhCCCceeeeCccccccccchhccccccccCCCccccchhhhccccCCCCCeeEEEecCCccc
Q 010684 240 HTFDALEQQVLNALS--FMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIF 317 (504)
Q Consensus 240 ~s~~~le~~~~~~~~--~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~ 317 (504)
||++++|+++++..+ +..|+ ++.|||++..... +.+...+..+++|.+|||+++++++|||||||...
T Consensus 218 Ntf~~LE~~~~~~~~~~~~~p~-v~~VGPl~~~~~~---------~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~ 287 (468)
T PLN02207 218 NSSFDIEPYSVNHFLDEQNYPS-VYAVGPIFDLKAQ---------PHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGR 287 (468)
T ss_pred EchHHHhHHHHHHHHhccCCCc-EEEecCCcccccC---------CCCccccchhhHHHHHHhcCCCCcEEEEEeccCcC
Confidence 999999999998884 35566 9999999864221 11100011346799999999888999999999999
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHhhccCcEEEeecchHhhhcCCCcceEEecCCchhHHHh
Q 010684 318 MNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVES 397 (504)
Q Consensus 318 ~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~I~HGG~gs~~ea 397 (504)
.+.+++.+++.+|+.++++|||+++.... ...+.+|++|.++.++|+++.+|+||.+||+|+++++|||||||||++||
T Consensus 288 ~~~~q~~ela~~l~~~~~~flW~~r~~~~-~~~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Ea 366 (468)
T PLN02207 288 LRGPLVKEIAHGLELCQYRFLWSLRTEEV-TNDDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVES 366 (468)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEEeCCCc-cccccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHH
Confidence 99999999999999999999999985321 11235888999999999999999999999999999999999999999999
Q ss_pred hhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCC-----CCCccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Q 010684 398 LCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGD-----DEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEA 472 (504)
Q Consensus 398 l~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~-----~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~ 472 (504)
+++|||||++|+++||+.||+++++++|+|+.+... ...++.++|+++|+++|.+ ++++||+||++++++++++
T Consensus 367 i~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~-~~~~~r~~a~~l~~~a~~A 445 (468)
T PLN02207 367 LWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNK-DNNVVRKRVMDISQMIQRA 445 (468)
T ss_pred HHcCCCEEecCccccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999986779999977420 1246999999999999973 3569999999999999999
Q ss_pred hCCCCChHHHHHHHHHHHHhc
Q 010684 473 AAPHGSSSLNLDKLVNEILLS 493 (504)
Q Consensus 473 ~~~~g~~~~~~~~~~~~~~~~ 493 (504)
+.+||||..++++||+++..-
T Consensus 446 ~~~GGSS~~~l~~~v~~~~~~ 466 (468)
T PLN02207 446 TKNGGSSFAAIEKFIHDVIGI 466 (468)
T ss_pred hcCCCcHHHHHHHHHHHHHhc
Confidence 999999999999999998764
No 6
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=9.7e-64 Score=506.46 Aligned_cols=441 Identities=29% Similarity=0.531 Sum_probs=337.7
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHH--HHhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCCCC
Q 010684 9 SKVHAVCIPSPFQSHIKAMLKLAKL--LHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPT 86 (504)
Q Consensus 9 ~~~~il~~~~~~~GHi~p~l~LA~~--L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~ 86 (504)
++.||+|+|+|++||++|++.||+. |+++|++|||++++.+.+.+.... . ..+.+++..++++++++. .
T Consensus 7 ~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~-~----~~~~~~~~~~~~glp~~~---~- 77 (456)
T PLN02210 7 QETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVE-K----PRRPVDLVFFSDGLPKDD---P- 77 (456)
T ss_pred CCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhcccc-C----CCCceEEEECCCCCCCCc---c-
Confidence 4789999999999999999999999 569999999999998877653321 1 123688888888887762 1
Q ss_pred cccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEccccHHHHHhHhhhhh
Q 010684 87 AQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQT 166 (504)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 166 (504)
.+...++..+...+ .+.++++++.. ++||||+|.++.|+..+|+++|||.+.+++.++..+..+.++..
T Consensus 78 -~~~~~~~~~~~~~~-~~~l~~~l~~~---------~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~ 146 (456)
T PLN02210 78 -RAPETLLKSLNKVG-AKNLSKIIEEK---------RYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYM 146 (456)
T ss_pred -cCHHHHHHHHHHhh-hHHHHHHHhcC---------CCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhh
Confidence 23445666665555 56666666542 78999999999999999999999999999999988876655421
Q ss_pred hhhcCCCCccccccccchhhhhcccccccCCCCCCCCCCCCCcccccCCCchhHHHHHHHHhhhcccCcEEEEcChhhhh
Q 010684 167 FKEKGLFPVKVLADKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALE 246 (504)
Q Consensus 167 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le 246 (504)
. ....+... ... ....+|+++.++..+++.++.... ...+...+.+..+....++.+++||+.++|
T Consensus 147 ~--~~~~~~~~--~~~---------~~~~~Pgl~~~~~~dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE 212 (456)
T PLN02210 147 K--TNSFPDLE--DLN---------QTVELPALPLLEVRDLPSFMLPSG-GAHFNNLMAEFADCLRYVKWVLVNSFYELE 212 (456)
T ss_pred c--cCCCCccc--ccC---------CeeeCCCCCCCChhhCChhhhcCC-chHHHHHHHHHHHhcccCCEEEEeCHHHHh
Confidence 1 11111110 000 112467777677777776544321 111222333444455678899999999999
Q ss_pred HHHHHHHhhhCCCceeeeCcccccc--ccchhccccccccCCCccccchhhhccccCCCCCeeEEEecCCccccCHHHHH
Q 010684 247 QQVLNALSFMFPHHLFTIGPLQLLL--NQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLI 324 (504)
Q Consensus 247 ~~~~~~~~~~~p~~~~~vGpl~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~ 324 (504)
+.++++++.. ++ +++|||+++.. ..... ..........|+.+++|.+|||.++.+++|||||||....+.++++
T Consensus 213 ~~~~~~l~~~-~~-v~~VGPl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ 288 (456)
T PLN02210 213 SEIIESMADL-KP-VIPIGPLVSPFLLGDDEE--ETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVE 288 (456)
T ss_pred HHHHHHHhhc-CC-EEEEcccCchhhcCcccc--cccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHH
Confidence 9999998773 55 99999997521 00000 0000000023556778999999988899999999999888999999
Q ss_pred HHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHhh-ccCcEEEeecchHhhhcCCCcceEEecCCchhHHHhhhcCCc
Q 010684 325 EVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKA-KEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVP 403 (504)
Q Consensus 325 ~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~nv~~~~~vpq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP 403 (504)
+++.+|+.++.+|||+++.... ...+..+.++. ++++++++|+||.+||+|+++++|||||||||++||+++|||
T Consensus 289 e~a~~l~~~~~~flw~~~~~~~----~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP 364 (456)
T PLN02210 289 TIAKALKNRGVPFLWVIRPKEK----AQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVP 364 (456)
T ss_pred HHHHHHHhCCCCEEEEEeCCcc----ccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCC
Confidence 9999999999999999974321 11234555555 488889999999999999999999999999999999999999
Q ss_pred EEecCCCCCcchhhhhhhhhcceeEEecCC--CCCccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhCCCCChHH
Q 010684 404 MICWPFTGDQPTNGRYVCNEWGVGMEINGD--DEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSL 481 (504)
Q Consensus 404 ~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~--~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~ 481 (504)
||++|+++||+.||+++++.+|+|+.+... .+.+++++|+++|+++|.+++|++||+||++|++.+++++++||||..
T Consensus 365 ~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~ 444 (456)
T PLN02210 365 VVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSAR 444 (456)
T ss_pred EEecccccccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 999999999999999996569999999631 136899999999999999988889999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 010684 482 NLDKLVNEIL 491 (504)
Q Consensus 482 ~~~~~~~~~~ 491 (504)
++++|++++.
T Consensus 445 ~l~~~v~~~~ 454 (456)
T PLN02210 445 NLDLFISDIT 454 (456)
T ss_pred HHHHHHHHHh
Confidence 9999999885
No 7
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=9.7e-64 Score=504.61 Aligned_cols=435 Identities=26% Similarity=0.440 Sum_probs=335.3
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHH-hCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCCC----CCCCCCCCC
Q 010684 10 KVHAVCIPSPFQSHIKAMLKLAKLLH-HKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPD----GLPASSDES 84 (504)
Q Consensus 10 ~~~il~~~~~~~GHi~p~l~LA~~L~-~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~----~~~~~~~~~ 84 (504)
+.||+++|+|++||++|++.||+.|+ ++|++|||++++.+...+..... ..+++++..+|. +++.. ..
T Consensus 5 ~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~-----~~~~i~~~~lp~p~~~glp~~--~~ 77 (481)
T PLN02992 5 KPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFL-----NSTGVDIVGLPSPDISGLVDP--SA 77 (481)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccc-----cCCCceEEECCCccccCCCCC--Cc
Confidence 67999999999999999999999998 78999999999988765533211 112688888874 33311 01
Q ss_pred CCcccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEccccHHHHHhHhhh
Q 010684 85 PTAQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQF 164 (504)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 164 (504)
+....+......+ .+.++++++++. .+++|||+|.++.|+..+|+++|||++.++++++..++.+.+.
T Consensus 78 ----~~~~~~~~~~~~~-~~~~~~~l~~~~-------~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~ 145 (481)
T PLN02992 78 ----HVVTKIGVIMREA-VPTLRSKIAEMH-------QKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYY 145 (481)
T ss_pred ----cHHHHHHHHHHHh-HHHHHHHHHhcC-------CCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhh
Confidence 1222222233344 678888887652 2689999999999999999999999999999999877665544
Q ss_pred hhhhhcCCCCccccccccchhhhhcccccccCCCCCCCCCCCCCcccccCCCchhHHHHHHHHhhhcccCcEEEEcChhh
Q 010684 165 QTFKEKGLFPVKVLADKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDA 244 (504)
Q Consensus 165 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~ 244 (504)
+........+.. ... ....+|+++.++..+++..+... .+.....+.+.......++.+++|||.+
T Consensus 146 ~~~~~~~~~~~~---~~~---------~~~~iPg~~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~a~gvlvNTf~e 211 (481)
T PLN02992 146 PTLDKDIKEEHT---VQR---------KPLAMPGCEPVRFEDTLDAYLVP--DEPVYRDFVRHGLAYPKADGILVNTWEE 211 (481)
T ss_pred hhhccccccccc---cCC---------CCcccCCCCccCHHHhhHhhcCC--CcHHHHHHHHHHHhcccCCEEEEechHH
Confidence 321111000000 000 12347888777777777533222 1123344445555667889999999999
Q ss_pred hhHHHHHHHhhh-------CCCceeeeCccccccccchhccccccccCCCccccchhhhccccCCCCCeeEEEecCCccc
Q 010684 245 LEQQVLNALSFM-------FPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIF 317 (504)
Q Consensus 245 le~~~~~~~~~~-------~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~ 317 (504)
||+.++++.+.. .++ ++.|||++..... . ..+++|.+|||.++.++||||||||...
T Consensus 212 LE~~~l~~l~~~~~~~~~~~~~-v~~VGPl~~~~~~-------------~--~~~~~c~~wLd~~~~~sVvyvsfGS~~~ 275 (481)
T PLN02992 212 MEPKSLKSLQDPKLLGRVARVP-VYPIGPLCRPIQS-------------S--KTDHPVLDWLNKQPNESVLYISFGSGGS 275 (481)
T ss_pred HhHHHHHHHhhccccccccCCc-eEEecCccCCcCC-------------C--cchHHHHHHHHcCCCCceEEEeeccccc
Confidence 999999988642 134 9999999753110 0 1356799999999889999999999999
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEEcCCCC----------------CCCCCCCchHHHHhhccCcEE-EeecchHhhhcCC
Q 010684 318 MNKQQLIEVAMGLVNSNHPFLWIIRPDLV----------------TGETADLPAEFEVKAKEKGFV-ASWCPQEEVLKHP 380 (504)
Q Consensus 318 ~~~~~~~~~~~a~~~~~~~~i~~~~~~~~----------------~~~~~~~~~~~~~~~~~nv~~-~~~vpq~~lL~~~ 380 (504)
++.+++.+++.+|+.++++|||++..... ....+.+|++|.+|..++..+ .+|+||.+||+|+
T Consensus 276 l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~ 355 (481)
T PLN02992 276 LSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQ 355 (481)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeCCcccccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCc
Confidence 99999999999999999999999963210 001235788999888776655 5899999999999
Q ss_pred CcceEEecCCchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCchHHHHHH
Q 010684 381 SIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRN 460 (504)
Q Consensus 381 ~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~ 460 (504)
++++|||||||||++||+++|||||++|+++||+.||+++++++|+|+.++..+..++.++|+++|+++|.+++|+.|++
T Consensus 356 ~vg~FitH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~l~~av~~vm~~~~g~~~r~ 435 (481)
T PLN02992 356 AVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVISRSKIEALVRKVMVEEEGEEMRR 435 (481)
T ss_pred ccCeeEecCchhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCcccHHHHHHHHHHHhcCCchHHHHH
Confidence 99999999999999999999999999999999999999996689999999741235899999999999999888899999
Q ss_pred HHHHHHHHHHHHh--CCCCChHHHHHHHHHHHHhc
Q 010684 461 KAMEWKGLAEEAA--APHGSSSLNLDKLVNEILLS 493 (504)
Q Consensus 461 ~a~~l~~~~~~~~--~~~g~~~~~~~~~~~~~~~~ 493 (504)
+++++++.+++++ ++||||..++++|++++++.
T Consensus 436 ~a~~~~~~a~~Av~~~~GGSS~~~l~~~v~~~~~~ 470 (481)
T PLN02992 436 KVKKLRDTAEMSLSIDGGGVAHESLCRVTKECQRF 470 (481)
T ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHH
Confidence 9999999999999 46999999999999998764
No 8
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.8e-63 Score=507.96 Aligned_cols=444 Identities=33% Similarity=0.591 Sum_probs=343.3
Q ss_pred CCCCcEEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCC
Q 010684 7 ACSKVHAVCIPSPFQSHIKAMLKLAKLLHHK--GFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDES 84 (504)
Q Consensus 7 ~~~~~~il~~~~~~~GHi~p~l~LA~~L~~~--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~ 84 (504)
++.+.||+++|+|++||++|++.||+.|+.+ ||+|||++++.+...+..... .++++|..+++.++...
T Consensus 7 ~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~------~~gi~fv~lp~~~p~~~--- 77 (459)
T PLN02448 7 PTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPK------PDNIRFATIPNVIPSEL--- 77 (459)
T ss_pred CCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCC------CCCEEEEECCCCCCCcc---
Confidence 4458899999999999999999999999999 999999999998877765421 13799999997666542
Q ss_pred CCcccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEccccHHHHHhHhhh
Q 010684 85 PTAQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQF 164 (504)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 164 (504)
....+...++..+...+ .+.++++++++. . ++||||+|.++.|+..+|+++|||++.++++++..+..+.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~-~------~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~ 149 (459)
T PLN02448 78 VRAADFPGFLEAVMTKM-EAPFEQLLDRLE-P------PVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHF 149 (459)
T ss_pred ccccCHHHHHHHHHHHh-HHHHHHHHHhcC-C------CcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHh
Confidence 22234555666555556 778888887763 2 789999999999999999999999999999998777766554
Q ss_pred hhhhhcCCCCccccccccchhhhhcccccccCCCCCCCCCCCCCcccccCCCchhHHHHHHHHhhhcccCcEEEEcChhh
Q 010684 165 QTFKEKGLFPVKVLADKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDA 244 (504)
Q Consensus 165 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~ 244 (504)
......+..|.. .... .+....++|+++.++..+++.++... .....+.+.........++.+++||+++
T Consensus 150 ~~~~~~~~~~~~---~~~~-----~~~~~~~iPg~~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~~~~vlvNTf~e 219 (459)
T PLN02448 150 DLLPQNGHFPVE---LSES-----GEERVDYIPGLSSTRLSDLPPIFHGN--SRRVLKRILEAFSWVPKAQYLLFTSFYE 219 (459)
T ss_pred hhhhhccCCCCc---cccc-----cCCccccCCCCCCCChHHCchhhcCC--chHHHHHHHHHHhhcccCCEEEEccHHH
Confidence 432222211211 0000 00012247777777777777655322 2222334444445556678999999999
Q ss_pred hhHHHHHHHhhhCCCceeeeCccccccccchhccccccccCCCccccchhhhccccCCCCCeeEEEecCCccccCHHHHH
Q 010684 245 LEQQVLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLI 324 (504)
Q Consensus 245 le~~~~~~~~~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~ 324 (504)
||+.++++.+...+.+++.|||+......... ..+......+.++.+||+.++.+++|||||||....+.+++.
T Consensus 220 LE~~~~~~l~~~~~~~~~~iGP~~~~~~~~~~------~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~ 293 (459)
T PLN02448 220 LEAQAIDALKSKFPFPVYPIGPSIPYMELKDN------SSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMD 293 (459)
T ss_pred hhHHHHHHHHhhcCCceEEecCcccccccCCC------ccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHH
Confidence 99999999987665449999999753111000 000000112347999999988899999999999888889999
Q ss_pred HHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHhhccCcEEEeecchHhhhcCCCcceEEecCCchhHHHhhhcCCcE
Q 010684 325 EVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPM 404 (504)
Q Consensus 325 ~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~ 404 (504)
+++.+|+.++.+|||++.... .++.++.++|+++.+|+||.+||+|+++++||||||+||++||+++||||
T Consensus 294 ~~~~~l~~~~~~~lw~~~~~~---------~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~ 364 (459)
T PLN02448 294 EIAAGLRDSGVRFLWVARGEA---------SRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPM 364 (459)
T ss_pred HHHHHHHhCCCCEEEEEcCch---------hhHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCE
Confidence 999999999999999876431 24545556799999999999999999999999999999999999999999
Q ss_pred EecCCCCCcchhhhhhhhhcceeEEecCC---CCCccHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHhCCCCCh
Q 010684 405 ICWPFTGDQPTNGRYVCNEWGVGMEINGD---DEDVIRNEVEKLVREMMEG--EKGKQMRNKAMEWKGLAEEAAAPHGSS 479 (504)
Q Consensus 405 v~~P~~~DQ~~na~rv~~~~G~G~~l~~~---~~~~~~~~l~~ai~~vl~~--~~~~~~~~~a~~l~~~~~~~~~~~g~~ 479 (504)
|++|+++||+.||+|+++.||+|+.+... ...+++++|+++|+++|++ ++|++||+||+++++++++++.+||||
T Consensus 365 l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss 444 (459)
T PLN02448 365 LTFPLFWDQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSS 444 (459)
T ss_pred EeccccccchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 99999999999999996668999998631 1357999999999999986 467899999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 010684 480 SLNLDKLVNEILL 492 (504)
Q Consensus 480 ~~~~~~~~~~~~~ 492 (504)
..++++|++.++.
T Consensus 445 ~~~l~~~v~~~~~ 457 (459)
T PLN02448 445 DTNLDAFIRDISQ 457 (459)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999875
No 9
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.8e-63 Score=504.47 Aligned_cols=460 Identities=25% Similarity=0.415 Sum_probs=339.9
Q ss_pred CCCCCCCCCCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCC----CC
Q 010684 1 MESKPKACSKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIP----DG 76 (504)
Q Consensus 1 ~~~~~~~~~~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~----~~ 76 (504)
|-+..+.+ ++||+++|+|++||++|++.||+.|+.+|++|||++++.+...+..... ..+++++..++ ++
T Consensus 1 ~~~~~~~~-~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~-----~~~~i~~~~lp~P~~~~ 74 (477)
T PLN02863 1 MTELNKPA-GTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLS-----KHPSIETLVLPFPSHPS 74 (477)
T ss_pred CcccccCC-CCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcc-----cCCCeeEEeCCCCCcCC
Confidence 55665554 7899999999999999999999999999999999999998877754311 12357776654 24
Q ss_pred CCCCCCCCCC-cccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEccccH
Q 010684 77 LPASSDESPT-AQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISA 155 (504)
Q Consensus 77 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~ 155 (504)
+|++.+.... ..+....+......+ .+.+.+++++.. .+++|||+|.+..|+..+|+++|||++.++++++
T Consensus 75 lPdG~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~l~~~~-------~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA 146 (477)
T PLN02863 75 IPSGVENVKDLPPSGFPLMIHALGEL-YAPLLSWFRSHP-------SPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGA 146 (477)
T ss_pred CCCCCcChhhcchhhHHHHHHHHHHh-HHHHHHHHHhCC-------CCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCH
Confidence 5555322211 111111222222344 566666666531 2679999999999999999999999999999999
Q ss_pred HHHHhHhhhhhhhhcCCCCccccccccchhhhhcccccccCCCCCCCCCCCCCcccccCCCchhHHHHHHHHhhhcccCc
Q 010684 156 CSFMGFKQFQTFKEKGLFPVKVLADKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKAS 235 (504)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (504)
+.+..+.++....+....+ . .... .+ ....+|+++.++..+++.++......+.....+.+.......++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~-~---~~~~----~~--~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (477)
T PLN02863 147 MALSIMYSLWREMPTKINP-D---DQNE----IL--SFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASW 216 (477)
T ss_pred HHHHHHHHHhhcccccccc-c---cccc----cc--ccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCC
Confidence 9988877654211100000 0 0000 00 12347888778888888765432122223344444444455678
Q ss_pred EEEEcChhhhhHHHHHHHhhhC--CCceeeeCccccccccchhccccccccCCCccccchhhhccccCCCCCeeEEEecC
Q 010684 236 AIIIHTFDALEQQVLNALSFMF--PHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFG 313 (504)
Q Consensus 236 ~~l~~s~~~le~~~~~~~~~~~--p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~G 313 (504)
.+++|||+++|+.++++.+..+ ++ ++.|||+++....... . ...+.+.+..+++|.+|||.++++++||||||
T Consensus 217 ~vlvNTf~eLE~~~~~~~~~~~~~~~-v~~IGPL~~~~~~~~~--~--~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfG 291 (477)
T PLN02863 217 GLVVNSFTELEGIYLEHLKKELGHDR-VWAVGPILPLSGEKSG--L--MERGGPSSVSVDDVMTWLDTCEDHKVVYVCFG 291 (477)
T ss_pred EEEEecHHHHHHHHHHHHHhhcCCCC-eEEeCCCccccccccc--c--cccCCcccccHHHHHHHHhcCCCCceEEEEee
Confidence 8999999999999999998765 44 9999999753210000 0 00000111234679999999988999999999
Q ss_pred CccccCHHHHHHHHHHHHhCCCCEEEEEcCCCC-CCCCCCCchHHHHhhcc-CcEEEeecchHhhhcCCCcceEEecCCc
Q 010684 314 SFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLV-TGETADLPAEFEVKAKE-KGFVASWCPQEEVLKHPSIGGFLTHCGW 391 (504)
Q Consensus 314 S~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~-nv~~~~~vpq~~lL~~~~~~~~I~HGG~ 391 (504)
|....+.+.+.+++.+++.++.+|||+++.... ......+|.+|.++..+ ++++.+|+||.+||+|+++++|||||||
T Consensus 292 S~~~~~~~~~~ela~gL~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~ 371 (477)
T PLN02863 292 SQVVLTKEQMEALASGLEKSGVHFIWCVKEPVNEESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGW 371 (477)
T ss_pred ceecCCHHHHHHHHHHHHhCCCcEEEEECCCcccccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCc
Confidence 998888899999999999999999999984321 11123477888877654 5566689999999999999999999999
Q ss_pred hhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCC-CCCccHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHH
Q 010684 392 NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGD-DEDVIRNEVEKLVREMME-GEKGKQMRNKAMEWKGLA 469 (504)
Q Consensus 392 gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~-~~~~~~~~l~~ai~~vl~-~~~~~~~~~~a~~l~~~~ 469 (504)
||++||+++|||||++|+++||+.||+++++++|+|+.+... ...++.+++.++|+++|. ++ .||+||+++++++
T Consensus 372 nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~~~---~~r~~a~~l~e~a 448 (477)
T PLN02863 372 NSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGADTVPDSDELARVFMESVSENQ---VERERAKELRRAA 448 (477)
T ss_pred hHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhccH---HHHHHHHHHHHHH
Confidence 999999999999999999999999999986889999999531 124689999999999994 44 8999999999999
Q ss_pred HHHhCCCCChHHHHHHHHHHHHh
Q 010684 470 EEAAAPHGSSSLNLDKLVNEILL 492 (504)
Q Consensus 470 ~~~~~~~g~~~~~~~~~~~~~~~ 492 (504)
++++.+||||..++++||+++.+
T Consensus 449 ~~Av~~gGSS~~~l~~~v~~i~~ 471 (477)
T PLN02863 449 LDAIKERGSSVKDLDGFVKHVVE 471 (477)
T ss_pred HHHhccCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999975
No 10
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=4.9e-63 Score=497.66 Aligned_cols=437 Identities=29% Similarity=0.520 Sum_probs=336.9
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHh-CCCeEEEEeCccc-hHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCCCCc
Q 010684 10 KVHAVCIPSPFQSHIKAMLKLAKLLHH-KGFHITFVNTEFN-HRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTA 87 (504)
Q Consensus 10 ~~~il~~~~~~~GHi~p~l~LA~~L~~-~Gh~Vt~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~ 87 (504)
+.||+++|+|++||++|++.||+.|+. +|+.|||++++.+ ...+... ....++++|..++++++.+.+ ...
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~-----~~~~~~i~~~~i~dglp~g~~--~~~ 75 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPN-----HNNVENLSFLTFSDGFDDGVI--SNT 75 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhcc-----CCCCCCEEEEEcCCCCCCccc--ccc
Confidence 569999999999999999999999995 7999999999864 2222111 111136999999988877521 122
Q ss_pred ccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEccccHHHHHhHhhhhhh
Q 010684 88 QDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTF 167 (504)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 167 (504)
.+...++..+...+ .+.+.++++++... +.+++|||+|.++.|+..+|+++|||++.++++++..++.++++...
T Consensus 76 ~~~~~~~~~~~~~~-~~~l~~~l~~l~~~----~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~ 150 (455)
T PLN02152 76 DDVQNRLVNFERNG-DKALSDFIEANLNG----DSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTG 150 (455)
T ss_pred ccHHHHHHHHHHhc-cHHHHHHHHHhhcc----CCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhcc
Confidence 34555566565666 78899998876421 12569999999999999999999999999999999888776654311
Q ss_pred hhcCCCCccccccccchhhhhcccccccCCCCCCCCCCCCCcccccCCCchhHHHHHHHHhhhcc--cCcEEEEcChhhh
Q 010684 168 KEKGLFPVKVLADKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENAS--KASAIIIHTFDAL 245 (504)
Q Consensus 168 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~s~~~l 245 (504)
. . ....+|+++.++..+++.++......+.....+.+...... .++.+++|||++|
T Consensus 151 ~-------~---------------~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eL 208 (455)
T PLN02152 151 N-------N---------------SVFEFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSL 208 (455)
T ss_pred C-------C---------------CeeecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHh
Confidence 0 0 11347787777788888866432222233334433333222 2469999999999
Q ss_pred hHHHHHHHhhhCCCceeeeCccccccccchhccccccccCC--CccccchhhhccccCCCCCeeEEEecCCccccCHHHH
Q 010684 246 EQQVLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGY--NLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQL 323 (504)
Q Consensus 246 e~~~~~~~~~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~ 323 (504)
|+.++++.+. .+ ++.|||+.+....... ..+. ..++.+.+|.+|||.++.++||||||||...++.+.+
T Consensus 209 E~~~~~~l~~--~~-v~~VGPL~~~~~~~~~------~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~ 279 (455)
T PLN02152 209 EPEFLTAIPN--IE-MVAVGPLLPAEIFTGS------ESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQI 279 (455)
T ss_pred hHHHHHhhhc--CC-EEEEcccCcccccccc------ccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHH
Confidence 9999998865 24 9999999753110000 0000 1133456899999999888999999999999999999
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCC-----CCC-CC--CCchHHHHhhccCcEEEeecchHhhhcCCCcceEEecCCchhHH
Q 010684 324 IEVAMGLVNSNHPFLWIIRPDLV-----TGE-TA--DLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIV 395 (504)
Q Consensus 324 ~~~~~a~~~~~~~~i~~~~~~~~-----~~~-~~--~~~~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~I~HGG~gs~~ 395 (504)
.+++.+|+.++++|||++..... ++. .. .++++|.++.++|+++.+|+||.+||+|+++++||||||+||++
T Consensus 280 ~ela~gL~~s~~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~ 359 (455)
T PLN02152 280 EELARALIEGKRPFLWVITDKLNREAKIEGEEETEIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSL 359 (455)
T ss_pred HHHHHHHHHcCCCeEEEEecCcccccccccccccccccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHH
Confidence 99999999999999999975311 000 01 24678888999999999999999999999999999999999999
Q ss_pred HhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCC-CCccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhC
Q 010684 396 ESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDD-EDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAA 474 (504)
Q Consensus 396 eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~-~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~ 474 (504)
||+++|||||++|+++||+.||+++++.||+|+.+.... +.++.++|+++|+++|+|+ ++.||+||++++++++++..
T Consensus 360 Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~-~~~~r~~a~~~~~~~~~a~~ 438 (455)
T PLN02152 360 ESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEK-SVELRESAEKWKRLAIEAGG 438 (455)
T ss_pred HHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999977778888875311 2469999999999999754 56799999999999999999
Q ss_pred CCCChHHHHHHHHHHH
Q 010684 475 PHGSSSLNLDKLVNEI 490 (504)
Q Consensus 475 ~~g~~~~~~~~~~~~~ 490 (504)
+||+|..++++||+++
T Consensus 439 ~ggsS~~nl~~li~~i 454 (455)
T PLN02152 439 EGGSSDKNVEAFVKTL 454 (455)
T ss_pred CCCcHHHHHHHHHHHh
Confidence 9999999999999986
No 11
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=5.1e-63 Score=504.34 Aligned_cols=445 Identities=28% Similarity=0.461 Sum_probs=340.3
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCC----CeEEEEeCccch----HHHHhhhcCCCCCCCCCeeEEeCCCCCCCC
Q 010684 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKG----FHITFVNTEFNH----RRLLKARGQHSLDGLPSFRFEAIPDGLPAS 80 (504)
Q Consensus 9 ~~~~il~~~~~~~GHi~p~l~LA~~L~~~G----h~Vt~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~ 80 (504)
+|.||+|+|+|++||++|++.||+.|+.+| +.|||++++.+. ..+........... .++++..+|+.....
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~lp~~~~p~ 80 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASG-LDIRFHHLPAVEPPT 80 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCC-CCEEEEECCCCCCCC
Confidence 467999999999999999999999999996 799999987542 23332211001111 159999998654221
Q ss_pred CCCCCCcccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEccccHHHHHh
Q 010684 81 SDESPTAQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMG 160 (504)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~ 160 (504)
..+ +...++..+...+ .+.++++++.+. .+++|||+|.++.|+..+|+++|||++.++++++..+..
T Consensus 81 --~~e---~~~~~~~~~~~~~-~~~l~~~L~~l~-------~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~ 147 (480)
T PLN00164 81 --DAA---GVEEFISRYIQLH-APHVRAAIAGLS-------CPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLAL 147 (480)
T ss_pred --ccc---cHHHHHHHHHHhh-hHHHHHHHHhcC-------CCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHH
Confidence 111 2334555455566 778888887751 156999999999999999999999999999999988887
Q ss_pred HhhhhhhhhcCCCCccccccccchhhhhcccccccCCCCCCCCCCCCCcccccCCCchhHHHHHHHHhhhcccCcEEEEc
Q 010684 161 FKQFQTFKEKGLFPVKVLADKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIH 240 (504)
Q Consensus 161 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 240 (504)
+.+.+........+.. ... ....+|+++.++..+++.+..... +.....+....+...+++.+++|
T Consensus 148 ~~~~~~~~~~~~~~~~---~~~---------~~~~iPGlp~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~~~vlvN 213 (480)
T PLN00164 148 MLRLPALDEEVAVEFE---EME---------GAVDVPGLPPVPASSLPAPVMDKK--SPNYAWFVYHGRRFMEAAGIIVN 213 (480)
T ss_pred HhhhhhhcccccCccc---ccC---------cceecCCCCCCChHHCCchhcCCC--cHHHHHHHHHHHhhhhcCEEEEe
Confidence 7665432111000001 000 112378887788888887554322 11223333344556778899999
Q ss_pred ChhhhhHHHHHHHhhhC-------CCceeeeCccccccccchhccccccccCCCccccchhhhccccCCCCCeeEEEecC
Q 010684 241 TFDALEQQVLNALSFMF-------PHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFG 313 (504)
Q Consensus 241 s~~~le~~~~~~~~~~~-------p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~G 313 (504)
||.++|+.++++.+... |+ ++.|||++..... . ..+..+++|.+|||.++.++|||||||
T Consensus 214 Tf~eLE~~~~~~~~~~~~~~~~~~~~-v~~vGPl~~~~~~-~-----------~~~~~~~~~~~wLd~~~~~svvyvsfG 280 (480)
T PLN00164 214 TAAELEPGVLAAIADGRCTPGRPAPT-VYPIGPVISLAFT-P-----------PAEQPPHECVRWLDAQPPASVVFLCFG 280 (480)
T ss_pred chHHhhHHHHHHHHhccccccCCCCc-eEEeCCCcccccc-C-----------CCccchHHHHHHHHhCCCCceEEEEec
Confidence 99999999999987642 45 9999999753211 0 011245689999999988999999999
Q ss_pred CccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCC--------CCCCCCchHHHHhhccCcEEE-eecchHhhhcCCCcce
Q 010684 314 SFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVT--------GETADLPAEFEVKAKEKGFVA-SWCPQEEVLKHPSIGG 384 (504)
Q Consensus 314 S~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~~~~~nv~~~-~~vpq~~lL~~~~~~~ 384 (504)
|....+.+++.+++.+|+.++++|||++...... +....+|++|.++..++..++ +|+||.+||+|+++++
T Consensus 281 S~~~~~~~q~~ela~gL~~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~ 360 (480)
T PLN00164 281 SMGFFDAPQVREIAAGLERSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGG 360 (480)
T ss_pred ccccCCHHHHHHHHHHHHHcCCCEEEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCe
Confidence 9988888899999999999999999999854211 112347788888877777766 7999999999999999
Q ss_pred EEecCCchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCC---CCCccHHHHHHHHHHHhcCc--hHHHHH
Q 010684 385 FLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGD---DEDVIRNEVEKLVREMMEGE--KGKQMR 459 (504)
Q Consensus 385 ~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~---~~~~~~~~l~~ai~~vl~~~--~~~~~~ 459 (504)
|||||||||++||+++|||||++|+++||+.||+++++++|+|+.+... +..++.++|+++|+++|.++ +|+.+|
T Consensus 361 fvtH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r 440 (480)
T PLN00164 361 FVTHCGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAR 440 (480)
T ss_pred EEeecccchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHH
Confidence 9999999999999999999999999999999999886889999998631 12479999999999999874 478999
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHhcC
Q 010684 460 NKAMEWKGLAEEAAAPHGSSSLNLDKLVNEILLSN 494 (504)
Q Consensus 460 ~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 494 (504)
++|+++++++++++.+||||..++++|++++++++
T Consensus 441 ~~a~~~~~~~~~a~~~gGSS~~~l~~~v~~~~~~~ 475 (480)
T PLN00164 441 EKAAEMKAACRKAVEEGGSSYAALQRLAREIRHGA 475 (480)
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999998764
No 12
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=6.6e-63 Score=498.22 Aligned_cols=449 Identities=27% Similarity=0.456 Sum_probs=332.6
Q ss_pred CCCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCC----CCCCCCCCC
Q 010684 8 CSKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIP----DGLPASSDE 83 (504)
Q Consensus 8 ~~~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~----~~~~~~~~~ 83 (504)
+.+.||+++|+|++||++|++.||+.|+.+|++|||++++.+...+...... . .+++++..++ +++|++.+.
T Consensus 4 ~~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~--~--~~~i~~~~lp~p~~dglp~~~~~ 79 (472)
T PLN02670 4 EEVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQ--L--SSSITLVSFPLPSVPGLPSSAES 79 (472)
T ss_pred CCCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhcccc--C--CCCeeEEECCCCccCCCCCCccc
Confidence 3467999999999999999999999999999999999999887666532110 1 1268999887 667765321
Q ss_pred CCCcccH----HHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEccccHHHHH
Q 010684 84 SPTAQDA----YSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFM 159 (504)
Q Consensus 84 ~~~~~~~----~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~ 159 (504)
..++ ..++....+.+ .+.++++++.+ +++|||+|.++.|+..+|+++|||++.++++++...+
T Consensus 80 ---~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~---------~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~ 146 (472)
T PLN02670 80 ---STDVPYTKQQLLKKAFDLL-EPPLTTFLETS---------KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLS 146 (472)
T ss_pred ---ccccchhhHHHHHHHHHHh-HHHHHHHHHhC---------CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHH
Confidence 1222 12344444555 67788887664 6799999999999999999999999999999998877
Q ss_pred hHhhhhhhhhcCCCCccccccccchhhhhcccccccCCCCCC--CCCCCCCcccccCCCchhHHHHHHHHhhhcccCcEE
Q 010684 160 GFKQFQTFKEKGLFPVKVLADKSCLTKEYLNSLIDWIPGMKD--IRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAI 237 (504)
Q Consensus 160 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (504)
.+.+.......+..+.. ... +...+.++|..+. ++..+++.++............+.+......+++.+
T Consensus 147 ~~~~~~~~~~~~~~~~~---~~~------~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gv 217 (472)
T PLN02670 147 FIGPPSSLMEGGDLRST---AED------FTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVV 217 (472)
T ss_pred HHhhhHhhhhcccCCCc---ccc------ccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEE
Confidence 65533221111111111 000 0001112232221 344566655432111111122223333445678899
Q ss_pred EEcChhhhhHHHHHHHhhhCCCceeeeCccccccccchhccccccccCCCccccchhhhccccCCCCCeeEEEecCCccc
Q 010684 238 IIHTFDALEQQVLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIF 317 (504)
Q Consensus 238 l~~s~~~le~~~~~~~~~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~ 317 (504)
++|||.++|+.++++.+...+.+++.|||+......... . .. .+. ..+++|.+|||++++++||||||||...
T Consensus 218 lvNTf~eLE~~~l~~l~~~~~~~v~~VGPl~~~~~~~~~---~--~~-~~~-~~~~~~~~wLd~~~~~sVvyvsfGS~~~ 290 (472)
T PLN02670 218 IIRSSPEFEPEWFDLLSDLYRKPIIPIGFLPPVIEDDEE---D--DT-IDV-KGWVRIKEWLDKQRVNSVVYVALGTEAS 290 (472)
T ss_pred EEeCHHHHhHHHHHHHHHhhCCCeEEEecCCcccccccc---c--cc-ccc-chhHHHHHHHhcCCCCceEEEEeccccc
Confidence 999999999999999987653339999999753111000 0 00 000 1135799999999889999999999999
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEEcCCCC--CCCCCCCchHHHHhhccCcEEE-eecchHhhhcCCCcceEEecCCchhH
Q 010684 318 MNKQQLIEVAMGLVNSNHPFLWIIRPDLV--TGETADLPAEFEVKAKEKGFVA-SWCPQEEVLKHPSIGGFLTHCGWNSI 394 (504)
Q Consensus 318 ~~~~~~~~~~~a~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~nv~~~-~~vpq~~lL~~~~~~~~I~HGG~gs~ 394 (504)
.+.+.+.+++.+|+.++++|||++..... .+....+|++|.++..+++.++ +|+||.+||+|+++++|||||||||+
T Consensus 291 l~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~ 370 (472)
T PLN02670 291 LRREEVTELALGLEKSETPFFWVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSV 370 (472)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchH
Confidence 99999999999999999999999985321 1112358899998888777775 89999999999999999999999999
Q ss_pred HHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCC--CCccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Q 010684 395 VESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDD--EDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEA 472 (504)
Q Consensus 395 ~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~--~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~ 472 (504)
+||+++|||||++|+++||+.||+++ +++|+|+.+...+ +.++.++|+++|+++|.+++|++||+||+++++.+++
T Consensus 371 ~Eai~~GVP~l~~P~~~DQ~~Na~~v-~~~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~- 448 (472)
T PLN02670 371 VEGLGFGRVLILFPVLNEQGLNTRLL-HGKKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGD- 448 (472)
T ss_pred HHHHHcCCCEEeCcchhccHHHHHHH-HHcCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhC-
Confidence 99999999999999999999999999 7899999997411 2489999999999999988888999999999999995
Q ss_pred hCCCCChHHHHHHHHHHHHhcC
Q 010684 473 AAPHGSSSLNLDKLVNEILLSN 494 (504)
Q Consensus 473 ~~~~g~~~~~~~~~~~~~~~~~ 494 (504)
.+.....++++++.+.+.+
T Consensus 449 ---~~~~~~~~~~~~~~l~~~~ 467 (472)
T PLN02670 449 ---MDRNNRYVDELVHYLRENR 467 (472)
T ss_pred ---cchhHHHHHHHHHHHHHhc
Confidence 5667899999999998876
No 13
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=1.2e-62 Score=498.63 Aligned_cols=453 Identities=32% Similarity=0.561 Sum_probs=333.3
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCC-----CCCCCCCCCC
Q 010684 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIP-----DGLPASSDES 84 (504)
Q Consensus 10 ~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~-----~~~~~~~~~~ 84 (504)
+.||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+..........+. .++|..++ +++|++.+..
T Consensus 8 ~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~-~i~~~~lp~p~~~dglp~~~~~~ 86 (491)
T PLN02534 8 QLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGL-PIRLVQIPFPCKEVGLPIGCENL 86 (491)
T ss_pred CCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCC-CeEEEEcCCCCccCCCCCCcccc
Confidence 57999999999999999999999999999999999999887666543211111111 48899887 5777653221
Q ss_pred CCcc--cHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEccccHHHHHhHh
Q 010684 85 PTAQ--DAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMGFK 162 (504)
Q Consensus 85 ~~~~--~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~ 162 (504)
.... .+...+......+ .+.+.++++... .+++|||+|.++.|+..+|+++|||++.+++++++....+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~l-~~~l~~lL~~~~-------~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~ 158 (491)
T PLN02534 87 DTLPSRDLLRKFYDAVDKL-QQPLERFLEQAK-------PPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSH 158 (491)
T ss_pred ccCCcHHHHHHHHHHHHHh-HHHHHHHHHhcC-------CCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHH
Confidence 1111 1222222222334 677777776531 26799999999999999999999999999999888776543
Q ss_pred hhhhhhhcCCCCccccccccchhhhhcccccccCCCCCC---CCCCCCCcccccCCCchhHHHHHHHHhhhcccCcEEEE
Q 010684 163 QFQTFKEKGLFPVKVLADKSCLTKEYLNSLIDWIPGMKD---IRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIII 239 (504)
Q Consensus 163 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 239 (504)
.+....+ ..+.. ... ....+|+++. ++..+++.++.... ....+.....+....++.+++
T Consensus 159 ~~~~~~~--~~~~~---~~~---------~~~~iPg~p~~~~l~~~dlp~~~~~~~---~~~~~~~~~~~~~~~a~~vlv 221 (491)
T PLN02534 159 NIRLHNA--HLSVS---SDS---------EPFVVPGMPQSIEITRAQLPGAFVSLP---DLDDVRNKMREAESTAFGVVV 221 (491)
T ss_pred HHHHhcc--cccCC---CCC---------ceeecCCCCccccccHHHCChhhcCcc---cHHHHHHHHHhhcccCCEEEE
Confidence 3211111 11111 000 1233667653 55666665432211 112222222233445779999
Q ss_pred cChhhhhHHHHHHHhhhCCCceeeeCccccccccchhcccccccc-CCCcc-ccchhhhccccCCCCCeeEEEecCCccc
Q 010684 240 HTFDALEQQVLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSI-GYNLL-KEETECLQWLDCKEPKSVIYVNFGSFIF 317 (504)
Q Consensus 240 ~s~~~le~~~~~~~~~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~-~~~~~-~~~~~l~~~l~~~~~~~~V~vs~GS~~~ 317 (504)
|||.+||+.++++++...+.+++.|||+......... .. ..+.+ ..+++|.+|||.+++++||||||||...
T Consensus 222 NTf~eLE~~~l~~l~~~~~~~v~~VGPL~~~~~~~~~------~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~ 295 (491)
T PLN02534 222 NSFNELEHGCAEAYEKAIKKKVWCVGPVSLCNKRNLD------KFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCR 295 (491)
T ss_pred ecHHHhhHHHHHHHHhhcCCcEEEECccccccccccc------ccccCCccccchHHHHHHHhcCCCCceEEEEeccccc
Confidence 9999999999999987664449999999753211000 00 00111 1235799999999889999999999998
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEEcCCCC-CC-CCCCCchHHHHhh-ccCcEEEeecchHhhhcCCCcceEEecCCchhH
Q 010684 318 MNKQQLIEVAMGLVNSNHPFLWIIRPDLV-TG-ETADLPAEFEVKA-KEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSI 394 (504)
Q Consensus 318 ~~~~~~~~~~~a~~~~~~~~i~~~~~~~~-~~-~~~~~~~~~~~~~-~~nv~~~~~vpq~~lL~~~~~~~~I~HGG~gs~ 394 (504)
...+.+.+++.+|+.++.+|||++..... .. ....+|++|.++. +.++++.+|+||.+||+|+++++|||||||||+
T Consensus 296 ~~~~q~~e~a~gl~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~ 375 (491)
T PLN02534 296 LVPSQLIELGLGLEASKKPFIWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNST 375 (491)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHH
Confidence 89999999999999999999999984311 11 1123578888774 456666799999999999999999999999999
Q ss_pred HHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCC-------C---C-CccHHHHHHHHHHHhc--CchHHHHHHH
Q 010684 395 VESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGD-------D---E-DVIRNEVEKLVREMME--GEKGKQMRNK 461 (504)
Q Consensus 395 ~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~-------~---~-~~~~~~l~~ai~~vl~--~~~~~~~~~~ 461 (504)
+||+++|||||++|+++||+.||+++++.||+|+.+... + + .++.++|+++|+++|. +++|+.+|+|
T Consensus 376 ~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~r 455 (491)
T PLN02534 376 IEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRR 455 (491)
T ss_pred HHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHH
Confidence 999999999999999999999999998999999988410 0 1 3799999999999997 5678899999
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHhcC
Q 010684 462 AMEWKGLAEEAAAPHGSSSLNLDKLVNEILLSN 494 (504)
Q Consensus 462 a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 494 (504)
|++|++++++++.+||||..++++||+++.+..
T Consensus 456 A~elk~~a~~Av~~GGSS~~nl~~fv~~i~~~~ 488 (491)
T PLN02534 456 AQELGVMARKAMELGGSSHINLSILIQDVLKQQ 488 (491)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998643
No 14
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.6e-62 Score=502.78 Aligned_cols=449 Identities=31% Similarity=0.461 Sum_probs=332.8
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCC--CeEEEEeCccchHHHH-hhhcCCCCC--CCCCeeEEeCCCCCCCCCCCC
Q 010684 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKG--FHITFVNTEFNHRRLL-KARGQHSLD--GLPSFRFEAIPDGLPASSDES 84 (504)
Q Consensus 10 ~~~il~~~~~~~GHi~p~l~LA~~L~~~G--h~Vt~~~~~~~~~~~~-~~~~~~~~~--~~~~i~~~~l~~~~~~~~~~~ 84 (504)
|+||+++|+|++||++|++.||+.|+.+| ..|||++++.+...+. +........ ..+++++..+|++.+.. .
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~---~ 78 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPT---T 78 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCc---c
Confidence 77999999999999999999999999998 8899999987754321 000000000 12369999998665422 1
Q ss_pred CCcccHHHHHHHHHHhhcchHHHHHHHHhhcC-CCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEccccHHHHHhHhh
Q 010684 85 PTAQDAYSLGENIINNVLLHPFLDLLAKLNDS-SNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQ 163 (504)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~~~~~~DlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~ 163 (504)
.. ..+..++..+ .+.+++.++++... ......+.+|||+|.++.|+..+|+++|||++.++++++..++.+.+
T Consensus 79 ~~-~~~~~~~~~~-----~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~ 152 (481)
T PLN02554 79 ED-PTFQSYIDNQ-----KPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLH 152 (481)
T ss_pred cc-hHHHHHHHHH-----HHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHh
Confidence 11 1222233333 34444444444210 00001134899999999999999999999999999999998888776
Q ss_pred hhhhhhcCCCCccccccccchhhhhcccccccCCCCC-CCCCCCCCcccccCCCchhHHHHHHHHhhhcccCcEEEEcCh
Q 010684 164 FQTFKEKGLFPVKVLADKSCLTKEYLNSLIDWIPGMK-DIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTF 242 (504)
Q Consensus 164 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~ 242 (504)
.+......-.+....+... ....+|++. +++..+++...... .....+.+.......++.+++||+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~---------~~v~iPgl~~pl~~~dlp~~~~~~----~~~~~~~~~~~~~~~~~gvlvNt~ 219 (481)
T PLN02554 153 VQMLYDEKKYDVSELEDSE---------VELDVPSLTRPYPVKCLPSVLLSK----EWLPLFLAQARRFREMKGILVNTV 219 (481)
T ss_pred hhhhccccccCccccCCCC---------ceeECCCCCCCCCHHHCCCcccCH----HHHHHHHHHHHhcccCCEEEEech
Confidence 6432211101111000000 123478873 57777777654321 223444455566778899999999
Q ss_pred hhhhHHHHHHHhh---hCCCceeeeCccccccccchhccccccccCCCccccchhhhccccCCCCCeeEEEecCCccccC
Q 010684 243 DALEQQVLNALSF---MFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMN 319 (504)
Q Consensus 243 ~~le~~~~~~~~~---~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~ 319 (504)
.++|+.+...+.. ..|+ ++.|||+...... . . . ...+.+++|.+|||.++.++||||||||+...+
T Consensus 220 ~eLe~~~~~~l~~~~~~~~~-v~~vGpl~~~~~~--~------~-~-~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~ 288 (481)
T PLN02554 220 AELEPQALKFFSGSSGDLPP-VYPVGPVLHLENS--G------D-D-SKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFS 288 (481)
T ss_pred HHHhHHHHHHHHhcccCCCC-EEEeCCCcccccc--c------c-c-cccccchHHHHHHhcCCCCcEEEEeccccccCC
Confidence 9999999888875 4466 9999999432111 0 0 0 001235689999999988899999999998889
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCCCC----------CCCCCCCchHHHHhhccCcEEEeecchHhhhcCCCcceEEecC
Q 010684 320 KQQLIEVAMGLVNSNHPFLWIIRPDLV----------TGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHC 389 (504)
Q Consensus 320 ~~~~~~~~~a~~~~~~~~i~~~~~~~~----------~~~~~~~~~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~I~HG 389 (504)
.+++.+++.+|+.++++|||+++.... .+....+|++|.++.++|+++++|+||.+||.|+++++|||||
T Consensus 289 ~~~~~~la~~l~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~ 368 (481)
T PLN02554 289 EEQAREIAIALERSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHC 368 (481)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEcCCcccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcccccC
Confidence 999999999999999999999975311 0111236889999999999999999999999999999999999
Q ss_pred CchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecC---------CCCCccHHHHHHHHHHHhc-CchHHHHH
Q 010684 390 GWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEING---------DDEDVIRNEVEKLVREMME-GEKGKQMR 459 (504)
Q Consensus 390 G~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~---------~~~~~~~~~l~~ai~~vl~-~~~~~~~~ 459 (504)
||||++||+++|||||++|+++||+.||+++++++|+|+.+.. ....++.++|+++|+++|+ |+ +||
T Consensus 369 G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~---~~r 445 (481)
T PLN02554 369 GWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDS---DVR 445 (481)
T ss_pred ccchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCH---HHH
Confidence 9999999999999999999999999999664489999999862 0136899999999999997 55 899
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHhcC
Q 010684 460 NKAMEWKGLAEEAAAPHGSSSLNLDKLVNEILLSN 494 (504)
Q Consensus 460 ~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 494 (504)
+||++++++++.++.+||++..++++||++++++.
T Consensus 446 ~~a~~l~~~~~~av~~gGss~~~l~~lv~~~~~~~ 480 (481)
T PLN02554 446 KRVKEMSEKCHVALMDGGSSHTALKKFIQDVTKNI 480 (481)
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999998753
No 15
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=5.7e-62 Score=499.36 Aligned_cols=452 Identities=28% Similarity=0.480 Sum_probs=325.9
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHHhhhcCC--CCCCC-CCeeEEeCC---CCCCCCCCC
Q 010684 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQH--SLDGL-PSFRFEAIP---DGLPASSDE 83 (504)
Q Consensus 10 ~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~--~~~~~-~~i~~~~l~---~~~~~~~~~ 83 (504)
+.||+++|+|++||++|++.||+.|+.+||+|||++++.+...+.+..... ..... -.+.+..+| +++|.+.+.
T Consensus 5 ~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e~ 84 (482)
T PLN03007 5 KLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCEN 84 (482)
T ss_pred CcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCccc
Confidence 679999999999999999999999999999999999999887666542110 00111 034455555 456665322
Q ss_pred CCC-----cccHHHHHHHHHH---hhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEccccH
Q 010684 84 SPT-----AQDAYSLGENIIN---NVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISA 155 (504)
Q Consensus 84 ~~~-----~~~~~~~~~~~~~---~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~ 155 (504)
... ......++..+.. .+ .+.++++++ .. ++||||+|.++.|+..+|+++|||++.++++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~l~---~~------~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a 154 (482)
T PLN03007 85 VDFITSNNNDDSGDLFLKFLFSTKYF-KDQLEKLLE---TT------RPDCLVADMFFPWATEAAEKFGVPRLVFHGTGY 154 (482)
T ss_pred ccccccccccchHHHHHHHHHHHHHH-HHHHHHHHh---cC------CCCEEEECCcchhHHHHHHHhCCCeEEeecccH
Confidence 211 1111223333322 22 333333333 22 789999999999999999999999999999988
Q ss_pred HHHHhHhhhhhhhhcCCCCccccccccchhhhhcccccccCCCCCC---CCCCCCCcccccCCCchhHHHHHHHHhhhcc
Q 010684 156 CSFMGFKQFQTFKEKGLFPVKVLADKSCLTKEYLNSLIDWIPGMKD---IRIRDLPSFIQSTDPKDMMFNLCVEATENAS 232 (504)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (504)
+....+.......+....+.. . ....+|+++. ++..+++.. .....+..++....+...
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~-----~---------~~~~~pg~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 216 (482)
T PLN03007 155 FSLCASYCIRVHKPQKKVASS-----S---------EPFVIPDLPGDIVITEEQINDA----DEESPMGKFMKEVRESEV 216 (482)
T ss_pred HHHHHHHHHHhcccccccCCC-----C---------ceeeCCCCCCccccCHHhcCCC----CCchhHHHHHHHHHhhcc
Confidence 776654433211111111100 0 1112455542 222333321 112223444555556677
Q ss_pred cCcEEEEcChhhhhHHHHHHHhhhCCCceeeeCccccccccchhccccccccCCCccccchhhhccccCCCCCeeEEEec
Q 010684 233 KASAIIIHTFDALEQQVLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNF 312 (504)
Q Consensus 233 ~~~~~l~~s~~~le~~~~~~~~~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~ 312 (504)
+.+.+++||++++|+++.++++......+++|||+......... .. ..+...+..+++|.+|||.++++++|||||
T Consensus 217 ~~~~vl~Nt~~~le~~~~~~~~~~~~~~~~~VGPl~~~~~~~~~--~~--~~~~~~~~~~~~~~~wLd~~~~~svvyvsf 292 (482)
T PLN03007 217 KSFGVLVNSFYELESAYADFYKSFVAKRAWHIGPLSLYNRGFEE--KA--ERGKKANIDEQECLKWLDSKKPDSVIYLSF 292 (482)
T ss_pred cCCEEEEECHHHHHHHHHHHHHhccCCCEEEEcccccccccccc--cc--ccCCccccchhHHHHHHhcCCCCceEEEee
Confidence 88999999999999999888877664449999998653211000 00 001111223577999999998899999999
Q ss_pred CCccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCC-CCCCCCchHHHHhh-ccCcEEEeecchHhhhcCCCcceEEecCC
Q 010684 313 GSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVT-GETADLPAEFEVKA-KEKGFVASWCPQEEVLKHPSIGGFLTHCG 390 (504)
Q Consensus 313 GS~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~-~~nv~~~~~vpq~~lL~~~~~~~~I~HGG 390 (504)
||+.....+.+.+++.+|+.++.+|||+++..... .....+|++|.++. +.|+++.+|+||.+||+|+++++||||||
T Consensus 293 GS~~~~~~~~~~~~~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G 372 (482)
T PLN03007 293 GSVASFKNEQLFEIAAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCG 372 (482)
T ss_pred cCCcCCCHHHHHHHHHHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCc
Confidence 99988888899999999999999999999854211 11234788888775 56777779999999999999999999999
Q ss_pred chhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecC------CCCCccHHHHHHHHHHHhcCchHHHHHHHHHH
Q 010684 391 WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEING------DDEDVIRNEVEKLVREMMEGEKGKQMRNKAME 464 (504)
Q Consensus 391 ~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~------~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~ 464 (504)
|||++||+++|||||++|+++||+.||+++++.+++|+.+.. +...+++++|+++|+++|.+++|++||+||++
T Consensus 373 ~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~ 452 (482)
T PLN03007 373 WNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKK 452 (482)
T ss_pred chHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 999999999999999999999999999998766677766531 11468999999999999999889999999999
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHhc
Q 010684 465 WKGLAEEAAAPHGSSSLNLDKLVNEILLS 493 (504)
Q Consensus 465 l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 493 (504)
+++.+++++.+||||..++++|++.+.+.
T Consensus 453 ~~~~a~~a~~~gGsS~~~l~~~v~~~~~~ 481 (482)
T PLN03007 453 LAEMAKAAVEEGGSSFNDLNKFMEELNSR 481 (482)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998854
No 16
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=6.1e-62 Score=487.24 Aligned_cols=434 Identities=24% Similarity=0.366 Sum_probs=327.2
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCC--CCCCCCCCCCCC
Q 010684 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIP--DGLPASSDESPT 86 (504)
Q Consensus 9 ~~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~--~~~~~~~~~~~~ 86 (504)
.|+||+++|++++||++|++.||+.|+.+|++|||++++.+...+... . .....-.+.+..+| +++|++.+....
T Consensus 4 ~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~--~-~~~~~~~v~~~~~p~~~glp~g~e~~~~ 80 (453)
T PLN02764 4 LKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL--N-LFPHNIVFRSVTVPHVDGLPVGTETVSE 80 (453)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc--c-cCCCCceEEEEECCCcCCCCCccccccc
Confidence 478999999999999999999999999999999999999876655432 1 00000137777777 677665321111
Q ss_pred -cccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEccccHHHHHhHhhhh
Q 010684 87 -AQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQ 165 (504)
Q Consensus 87 -~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 165 (504)
.......+......+ .+.++++++.. ++||||+|. +.|+..+|+++|||++.++++++..++.+.. +
T Consensus 81 ~~~~~~~~~~~a~~~~-~~~~~~~l~~~---------~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~ 148 (453)
T PLN02764 81 IPVTSADLLMSAMDLT-RDQVEVVVRAV---------EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-P 148 (453)
T ss_pred CChhHHHHHHHHHHHh-HHHHHHHHHhC---------CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-c
Confidence 111112222232344 67788887764 679999995 8899999999999999999999987766542 1
Q ss_pred hhhhcCCCCccccccccchhhhhcccccccCCCCCC----CCCCCCCcccc--cCCCchhHHHHHHHHhhhcccCcEEEE
Q 010684 166 TFKEKGLFPVKVLADKSCLTKEYLNSLIDWIPGMKD----IRIRDLPSFIQ--STDPKDMMFNLCVEATENASKASAIII 239 (504)
Q Consensus 166 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~ 239 (504)
....+. ..|+++. ++..+++.+.. .....+....++.+.......++.+++
T Consensus 149 ----~~~~~~-------------------~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlv 205 (453)
T PLN02764 149 ----GGELGV-------------------PPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAI 205 (453)
T ss_pred ----cccCCC-------------------CCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEE
Confidence 001000 0134432 33344443211 111112233444444355667889999
Q ss_pred cChhhhhHHHHHHHhhhCCCceeeeCccccccccchhccccccccCCCccccchhhhccccCCCCCeeEEEecCCccccC
Q 010684 240 HTFDALEQQVLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMN 319 (504)
Q Consensus 240 ~s~~~le~~~~~~~~~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~ 319 (504)
|||.++|+.++++.+...+.+++.|||++..... . ...+++|.+|||.+++++||||||||....+
T Consensus 206 NTf~eLE~~~~~~~~~~~~~~v~~VGPL~~~~~~-------------~-~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~ 271 (453)
T PLN02764 206 RTAREIEGNFCDYIEKHCRKKVLLTGPVFPEPDK-------------T-RELEERWVKWLSGYEPDSVVFCALGSQVILE 271 (453)
T ss_pred eccHHhhHHHHHHHHhhcCCcEEEeccCccCccc-------------c-ccchhHHHHHHhCCCCCceEEEeecccccCC
Confidence 9999999999999987543349999999753210 0 0124679999999999999999999998889
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCCCCC-CCCCCCchHHHHhhccCcEEE-eecchHhhhcCCCcceEEecCCchhHHHh
Q 010684 320 KQQLIEVAMGLVNSNHPFLWIIRPDLVT-GETADLPAEFEVKAKEKGFVA-SWCPQEEVLKHPSIGGFLTHCGWNSIVES 397 (504)
Q Consensus 320 ~~~~~~~~~a~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~nv~~~-~~vpq~~lL~~~~~~~~I~HGG~gs~~ea 397 (504)
.+.+.+++.+|+..+.+|+|++...... .....+|++|+++..++..++ +|+||.+||+|+++++|||||||||++||
T Consensus 272 ~~q~~ela~gL~~s~~pflwv~r~~~~~~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Ea 351 (453)
T PLN02764 272 KDQFQELCLGMELTGSPFLVAVKPPRGSSTIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWES 351 (453)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEeCCCCCcchhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHH
Confidence 9999999999999999999999843211 112458899999887777666 89999999999999999999999999999
Q ss_pred hhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCC-CCccHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHhC
Q 010684 398 LCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDD-EDVIRNEVEKLVREMMEG--EKGKQMRNKAMEWKGLAEEAAA 474 (504)
Q Consensus 398 l~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~-~~~~~~~l~~ai~~vl~~--~~~~~~~~~a~~l~~~~~~~~~ 474 (504)
+++|||||++|+++||+.||+++++.+|+|+.+...+ ..++.++|+++|+++|++ ++|+.+|+++++++++++
T Consensus 352 l~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~---- 427 (453)
T PLN02764 352 LLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLA---- 427 (453)
T ss_pred HHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH----
Confidence 9999999999999999999999966799999986311 258999999999999987 557889999999999996
Q ss_pred CCCChHHHHHHHHHHHHhcCcCCC
Q 010684 475 PHGSSSLNLDKLVNEILLSNKHNS 498 (504)
Q Consensus 475 ~~g~~~~~~~~~~~~~~~~~~~~~ 498 (504)
++|||..++++||+++++....+|
T Consensus 428 ~~GSS~~~l~~lv~~~~~~~~~~~ 451 (453)
T PLN02764 428 SPGLLTGYVDNFIESLQDLVSGTS 451 (453)
T ss_pred hcCCHHHHHHHHHHHHHHhccccc
Confidence 489999999999999998766554
No 17
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=3.8e-62 Score=491.64 Aligned_cols=422 Identities=24% Similarity=0.355 Sum_probs=313.2
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeC--C--CCCCCCCCCCC
Q 010684 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAI--P--DGLPASSDESP 85 (504)
Q Consensus 10 ~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l--~--~~~~~~~~~~~ 85 (504)
++||+++|+|++||++|++.||+.|+.+||+|||++++.+...+..... . ..++++..+ + ++++.+.+...
T Consensus 4 ~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a---~--~~~i~~~~l~~p~~dgLp~g~~~~~ 78 (442)
T PLN02208 4 KFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNL---F--PDSIVFHPLTIPPVNGLPAGAETTS 78 (442)
T ss_pred CCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccC---C--CCceEEEEeCCCCccCCCCCccccc
Confidence 8899999999999999999999999999999999999888776654311 0 014555544 3 45665522110
Q ss_pred Cc-ccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEccccHHHHHhHhhh
Q 010684 86 TA-QDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQF 164 (504)
Q Consensus 86 ~~-~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 164 (504)
.. .++..++......+ .+.++++++.+ ++||||+| ++.|+..+|+.+|||++.++++++.... +.+.
T Consensus 79 ~l~~~l~~~~~~~~~~~-~~~l~~~L~~~---------~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~ 146 (442)
T PLN02208 79 DIPISMDNLLSEALDLT-RDQVEAAVRAL---------RPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHV 146 (442)
T ss_pred chhHHHHHHHHHHHHHH-HHHHHHHHhhC---------CCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHcc
Confidence 01 12222333333344 56666666554 78999999 5789999999999999999999887543 3322
Q ss_pred hhhhhcCCCCccccccccchhhhhcccccccCCCCCC----CCCCCCCcccccCCCchhHHHHHHHHhhhcccCcEEEEc
Q 010684 165 QTFKEKGLFPVKVLADKSCLTKEYLNSLIDWIPGMKD----IRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIH 240 (504)
Q Consensus 165 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 240 (504)
+. .... .-+|+++. ++..+++.+. .....+..+..+..+....++.+++|
T Consensus 147 ~~----~~~~-------------------~~~pglp~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~vl~N 200 (442)
T PLN02208 147 PG----GKLG-------------------VPPPGYPSSKVLFRENDAHALA---TLSIFYKRLYHQITTGLKSCDVIALR 200 (442)
T ss_pred Cc----cccC-------------------CCCCCCCCcccccCHHHcCccc---ccchHHHHHHHHHHhhhccCCEEEEE
Confidence 11 0000 00234433 3344455321 11111222222333455678999999
Q ss_pred ChhhhhHHHHHHHhhhCCCceeeeCccccccccchhccccccccCCCccccchhhhccccCCCCCeeEEEecCCccccCH
Q 010684 241 TFDALEQQVLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNK 320 (504)
Q Consensus 241 s~~~le~~~~~~~~~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~ 320 (504)
||.++|+.++++.+...+.+++.|||++..... . .+.+.+|.+|||.+++++||||||||...++.
T Consensus 201 tf~eLE~~~~~~~~~~~~~~v~~vGpl~~~~~~-~-------------~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~ 266 (442)
T PLN02208 201 TCKEIEGKFCDYISRQYHKKVLLTGPMFPEPDT-S-------------KPLEEQWSHFLSGFPPKSVVFCSLGSQIILEK 266 (442)
T ss_pred CHHHHHHHHHHHHHhhcCCCEEEEeecccCcCC-C-------------CCCHHHHHHHHhcCCCCcEEEEeccccccCCH
Confidence 999999999999876553349999999864210 0 01357899999999888999999999998899
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCCCCC-CCCCCCchHHHHhhcc-CcEEEeecchHhhhcCCCcceEEecCCchhHHHhh
Q 010684 321 QQLIEVAMGLVNSNHPFLWIIRPDLVT-GETADLPAEFEVKAKE-KGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESL 398 (504)
Q Consensus 321 ~~~~~~~~a~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~-nv~~~~~vpq~~lL~~~~~~~~I~HGG~gs~~eal 398 (504)
+.+.+++.+++..+.+++|++...... .....+|++|.++..+ |+.+.+|+||.+||.|+++++|||||||||++||+
T Consensus 267 ~q~~e~~~~l~~s~~pf~wv~r~~~~~~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai 346 (442)
T PLN02208 267 DQFQELCLGMELTGLPFLIAVKPPRGSSTVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESL 346 (442)
T ss_pred HHHHHHHHHHHhCCCcEEEEEeCCCcccchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHH
Confidence 989999999888999999999854111 1123578899888665 55555899999999999999999999999999999
Q ss_pred hcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCC-CCccHHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHHHHhCC
Q 010684 399 CSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDD-EDVIRNEVEKLVREMMEGE--KGKQMRNKAMEWKGLAEEAAAP 475 (504)
Q Consensus 399 ~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~-~~~~~~~l~~ai~~vl~~~--~~~~~~~~a~~l~~~~~~~~~~ 475 (504)
++|||||++|+++||+.||+++++.+|+|+.++..+ +.++.++|+++|+++|+++ +|+.+|++++++++++. +
T Consensus 347 ~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~----~ 422 (442)
T PLN02208 347 VSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV----S 422 (442)
T ss_pred HcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh----c
Confidence 999999999999999999999867799999997511 1389999999999999864 47899999999999985 3
Q ss_pred CCChHHHHHHHHHHHHh
Q 010684 476 HGSSSLNLDKLVNEILL 492 (504)
Q Consensus 476 ~g~~~~~~~~~~~~~~~ 492 (504)
+|+|..++++||+++++
T Consensus 423 ~gsS~~~l~~~v~~l~~ 439 (442)
T PLN02208 423 PGLLTGYVDKFVEELQE 439 (442)
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 78999999999999965
No 18
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=2e-61 Score=484.94 Aligned_cols=440 Identities=25% Similarity=0.396 Sum_probs=332.4
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhC-CCeEEEEeCccchHHHH-hhhcCCCCCCCCCeeEEeCCCCCCCCCCCCCCc
Q 010684 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHK-GFHITFVNTEFNHRRLL-KARGQHSLDGLPSFRFEAIPDGLPASSDESPTA 87 (504)
Q Consensus 10 ~~~il~~~~~~~GHi~p~l~LA~~L~~~-Gh~Vt~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~ 87 (504)
+.||+++|+|++||++|++.||+.|+.+ |..||++++..+...+. +........ .+++++..+|.....+..... .
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~-~~~i~~~~lp~~~~~~l~~~~-~ 80 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAA-RTTCQITEIPSVDVDNLVEPD-A 80 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccC-CCceEEEECCCCccccCCCCC-c
Confidence 4599999999999999999999999977 99999998876654431 111111101 125999999843322200001 1
Q ss_pred ccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCC-eEEEccccHHHHHhHhhhhh
Q 010684 88 QDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLP-IVLFFTISACSFMGFKQFQT 166 (504)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~lgiP-~v~~~~~~~~~~~~~~~~~~ 166 (504)
+....+......+ .+.++++++++. .+++|||+|.++.|+..+|+++||| .+.++++++.....+++++.
T Consensus 81 -~~~~~~~~~~~~~-~~~~~~~l~~l~-------~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~ 151 (470)
T PLN03015 81 -TIFTKMVVKMRAM-KPAVRDAVKSMK-------RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPV 151 (470)
T ss_pred -cHHHHHHHHHHhc-hHHHHHHHHhcC-------CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhh
Confidence 2332233333456 788999988763 1679999999999999999999999 57777777766656555432
Q ss_pred hhhcCCCCccccccccchhhhhcccccccCCCCCCCCCCCCCcccccCCCchhHHHHHHHHhhhcccCcEEEEcChhhhh
Q 010684 167 FKEKGLFPVKVLADKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALE 246 (504)
Q Consensus 167 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le 246 (504)
... ..+.. ... .. ....+|+++.++..+++..+.... ...+.. +.+.......++.+++|||.+||
T Consensus 152 ~~~--~~~~~---~~~------~~-~~~~vPg~p~l~~~dlp~~~~~~~-~~~~~~-~~~~~~~~~~a~gvlvNTf~eLE 217 (470)
T PLN03015 152 LDT--VVEGE---YVD------IK-EPLKIPGCKPVGPKELMETMLDRS-DQQYKE-CVRSGLEVPMSDGVLVNTWEELQ 217 (470)
T ss_pred hhc--ccccc---cCC------CC-CeeeCCCCCCCChHHCCHhhcCCC-cHHHHH-HHHHHHhcccCCEEEEechHHHh
Confidence 211 10000 000 00 123478888888888886553322 112222 33444457789999999999999
Q ss_pred HHHHHHHhhhC-------CCceeeeCccccccccchhccccccccCCCccccchhhhccccCCCCCeeEEEecCCccccC
Q 010684 247 QQVLNALSFMF-------PHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMN 319 (504)
Q Consensus 247 ~~~~~~~~~~~-------p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~ 319 (504)
+.+++..+..+ ++ ++.|||+..... . .+.+++|.+|||.++.++||||||||...++
T Consensus 218 ~~~~~~l~~~~~~~~~~~~~-v~~VGPl~~~~~---~------------~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~ 281 (470)
T PLN03015 218 GNTLAALREDMELNRVMKVP-VYPIGPIVRTNV---H------------VEKRNSIFEWLDKQGERSVVYVCLGSGGTLT 281 (470)
T ss_pred HHHHHHHHhhcccccccCCc-eEEecCCCCCcc---c------------ccchHHHHHHHHhCCCCCEEEEECCcCCcCC
Confidence 99999987642 45 999999974210 0 0124579999999988999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCCCC---------CCCCCCCchHHHHhhccCcEEE-eecchHhhhcCCCcceEEecC
Q 010684 320 KQQLIEVAMGLVNSNHPFLWIIRPDLV---------TGETADLPAEFEVKAKEKGFVA-SWCPQEEVLKHPSIGGFLTHC 389 (504)
Q Consensus 320 ~~~~~~~~~a~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~~~~~nv~~~-~~vpq~~lL~~~~~~~~I~HG 389 (504)
.+++.+++.+|+.++++|||++..... ++..+.+|++|.+|..++..++ +|+||.+||+|+++++|||||
T Consensus 282 ~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~ 361 (470)
T PLN03015 282 FEQTVELAWGLELSGQRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHC 361 (470)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEecCccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecC
Confidence 999999999999999999999963211 0112357889998888877655 899999999999999999999
Q ss_pred CchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecC--CCCCccHHHHHHHHHHHhc--CchHHHHHHHHHHH
Q 010684 390 GWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEING--DDEDVIRNEVEKLVREMME--GEKGKQMRNKAMEW 465 (504)
Q Consensus 390 G~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~--~~~~~~~~~l~~ai~~vl~--~~~~~~~~~~a~~l 465 (504)
||||++||+++|||||++|+++||+.||+++++.+|+|+.+.. .+..++.++|+++|+++|. +++|+.+|+||++|
T Consensus 362 GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~l 441 (470)
T PLN03015 362 GWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEV 441 (470)
T ss_pred CchhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHH
Confidence 9999999999999999999999999999999889999999951 0136899999999999996 36789999999999
Q ss_pred HHHHHHHhCCCCChHHHHHHHHHHH
Q 010684 466 KGLAEEAAAPHGSSSLNLDKLVNEI 490 (504)
Q Consensus 466 ~~~~~~~~~~~g~~~~~~~~~~~~~ 490 (504)
++++++++++||||.+++++|++.+
T Consensus 442 k~~a~~Av~eGGSS~~nl~~~~~~~ 466 (470)
T PLN03015 442 RVSSERAWSHGGSSYNSLFEWAKRC 466 (470)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHhc
Confidence 9999999999999999999999876
No 19
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=7.7e-61 Score=489.55 Aligned_cols=455 Identities=25% Similarity=0.424 Sum_probs=327.9
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCC---eEEEEeCccchH-HHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCC
Q 010684 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKGF---HITFVNTEFNHR-RLLKARGQHSLDGLPSFRFEAIPDGLPASSDES 84 (504)
Q Consensus 9 ~~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh---~Vt~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~ 84 (504)
++.||+++|+|++||++|++.||+.|+.+|. .||++++..+.. ...... .......++|+|..+|+..... ..
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~-~~~~~~~~~i~~~~lp~~~~p~--~~ 78 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFL-KSLIASEPRIRLVTLPEVQDPP--PM 78 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHH-hhcccCCCCeEEEECCCCCCCc--cc
Confidence 3569999999999999999999999999984 567766543221 111110 0001122369999998654211 01
Q ss_pred CC-cccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCC-CeeEEEEcCCcchHHHHHHHcCCCeEEEccccHHHHHhHh
Q 010684 85 PT-AQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNP-AVSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMGFK 162 (504)
Q Consensus 85 ~~-~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~-~~DlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~ 162 (504)
+. .......+..+...+ .+.++++++++....+.... +++|||+|.++.|+..+|+++|||++.++++++..+..+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~-~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~ 157 (475)
T PLN02167 79 ELFVKASEAYILEFVKKM-VPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMK 157 (475)
T ss_pred cccccchHHHHHHHHHHH-HHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHH
Confidence 10 111112222233344 56666666665311000011 4599999999999999999999999999999998877766
Q ss_pred hhhhhhhcCCCCccccccccchhhhhcccccccCCCC-CCCCCCCCCcccccCCCchhHHHHHHHHhhhcccCcEEEEcC
Q 010684 163 QFQTFKEKGLFPVKVLADKSCLTKEYLNSLIDWIPGM-KDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHT 241 (504)
Q Consensus 163 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s 241 (504)
+.+............ .... ....+|++ +.++..+++....... ....+.+..+....++.+++||
T Consensus 158 ~~~~~~~~~~~~~~~-~~~~---------~~~~iPgl~~~l~~~dlp~~~~~~~----~~~~~~~~~~~~~~a~~vlvNT 223 (475)
T PLN02167 158 YLPERHRKTASEFDL-SSGE---------EELPIPGFVNSVPTKVLPPGLFMKE----SYEAWVEIAERFPEAKGILVNS 223 (475)
T ss_pred HHHHhcccccccccc-CCCC---------CeeECCCCCCCCChhhCchhhhCcc----hHHHHHHHHHhhcccCEeeecc
Confidence 543211110000000 0000 11236777 3466677775443221 1223334445567788999999
Q ss_pred hhhhhHHHHHHHhhh---CCCceeeeCccccccccchhccccccccCCCccccchhhhccccCCCCCeeEEEecCCcccc
Q 010684 242 FDALEQQVLNALSFM---FPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFM 318 (504)
Q Consensus 242 ~~~le~~~~~~~~~~---~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~ 318 (504)
|.++|+.++++.+.. +|+ ++.|||++........ .. ....+.+|.+|||.++.++||||||||+...
T Consensus 224 f~eLE~~~~~~l~~~~~~~p~-v~~vGpl~~~~~~~~~------~~---~~~~~~~~~~wld~~~~~svvyvsfGS~~~~ 293 (475)
T PLN02167 224 FTELEPNAFDYFSRLPENYPP-VYPVGPILSLKDRTSP------NL---DSSDRDRIMRWLDDQPESSVVFLCFGSLGSL 293 (475)
T ss_pred HHHHHHHHHHHHHhhcccCCe-eEEeccccccccccCC------CC---CcchhHHHHHHHhcCCCCceEEEeecccccC
Confidence 999999999998654 466 9999999864221000 00 0012367999999998899999999999888
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEEcCCCC--CCCCCCCchHHHHhhccCcEEEeecchHhhhcCCCcceEEecCCchhHHH
Q 010684 319 NKQQLIEVAMGLVNSNHPFLWIIRPDLV--TGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVE 396 (504)
Q Consensus 319 ~~~~~~~~~~a~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~I~HGG~gs~~e 396 (504)
+.+.+.+++.+++.++++|||+++.... ......+|++|.++..+++++++|+||.+||+|+++++|||||||||++|
T Consensus 294 ~~~~~~ela~~l~~~~~~flw~~~~~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~E 373 (475)
T PLN02167 294 PAPQIKEIAQALELVGCRFLWSIRTNPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLE 373 (475)
T ss_pred CHHHHHHHHHHHHhCCCcEEEEEecCcccccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHH
Confidence 8999999999999999999999975321 11123478899989889999999999999999999999999999999999
Q ss_pred hhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCC-----CCCccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Q 010684 397 SLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGD-----DEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEE 471 (504)
Q Consensus 397 al~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~-----~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~ 471 (504)
|+++|||||++|+++||+.||+++++++|+|+.+... ...+++++|+++|+++|.+++ .||++|+++++++++
T Consensus 374 al~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~--~~r~~a~~~~~~~~~ 451 (475)
T PLN02167 374 SLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGED--VPRKKVKEIAEAARK 451 (475)
T ss_pred HHHcCCCEEeccccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHH
Confidence 9999999999999999999998754899999998631 124799999999999997542 799999999999999
Q ss_pred HhCCCCChHHHHHHHHHHHHhc
Q 010684 472 AAAPHGSSSLNLDKLVNEILLS 493 (504)
Q Consensus 472 ~~~~~g~~~~~~~~~~~~~~~~ 493 (504)
++.+||||..++++||+++.+.
T Consensus 452 av~~gGsS~~~l~~~v~~i~~~ 473 (475)
T PLN02167 452 AVMDGGSSFVAVKRFIDDLLGD 473 (475)
T ss_pred HHhCCCcHHHHHHHHHHHHHhc
Confidence 9999999999999999999864
No 20
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=5.5e-61 Score=482.33 Aligned_cols=436 Identities=31% Similarity=0.502 Sum_probs=325.5
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCC--CeEEE--EeCccchHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCCC
Q 010684 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKG--FHITF--VNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESP 85 (504)
Q Consensus 10 ~~~il~~~~~~~GHi~p~l~LA~~L~~~G--h~Vt~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~ 85 (504)
+.||+++|+|++||++|++.||+.|+.+| +.||+ .++..+...+.... .......++++|..+|+..+.... ..
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~lp~~~~~~~~-~~ 80 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYI-SSVSSSFPSITFHHLPAVTPYSSS-ST 80 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhh-ccccCCCCCeEEEEcCCCCCCCCc-cc
Confidence 56999999999999999999999999998 45555 55544433322211 111112247999999876642211 11
Q ss_pred CcccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEccccHHHHHhHhhhh
Q 010684 86 TAQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQ 165 (504)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 165 (504)
...+...++......+ .+.+.++++++... .+++|||+|.++.|+..+|+++|||++.++++++..++.+.+++
T Consensus 81 ~~~~~~~~~~~~~~~~-~~~~~~~l~~l~~~-----~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~ 154 (451)
T PLN03004 81 SRHHHESLLLEILCFS-NPSVHRTLFSLSRN-----FNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLP 154 (451)
T ss_pred cccCHHHHHHHHHHhh-hHHHHHHHHhcCCC-----CCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHH
Confidence 1123333333344455 77888888876322 24599999999999999999999999999999999888877654
Q ss_pred hhhhcCCCCccccccccchhhhhcccccccCCCCCCCCCCCCCcccccCCCchhHHHHHHHHhhhcccCcEEEEcChhhh
Q 010684 166 TFKEKGLFPVKVLADKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDAL 245 (504)
Q Consensus 166 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l 245 (504)
..... .+.. ... +.....+|+++.++..+++.+..... ....+++.+.......++.+++|||+++
T Consensus 155 ~~~~~--~~~~---~~~-------~~~~v~iPg~p~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~~~vl~NTf~eL 220 (451)
T PLN03004 155 TIDET--TPGK---NLK-------DIPTVHIPGVPPMKGSDMPKAVLERD--DEVYDVFIMFGKQLSKSSGIIINTFDAL 220 (451)
T ss_pred hcccc--cccc---ccc-------cCCeecCCCCCCCChHHCchhhcCCc--hHHHHHHHHHHHhhcccCeeeeeeHHHh
Confidence 21110 0000 000 00223578888888888887654322 2233444555556677889999999999
Q ss_pred hHHHHHHHhhhCC-CceeeeCccccccccchhccccccccCCCccccchhhhccccCCCCCeeEEEecCCccccCHHHHH
Q 010684 246 EQQVLNALSFMFP-HHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLI 324 (504)
Q Consensus 246 e~~~~~~~~~~~p-~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~ 324 (504)
|+.++++.+..+. .+++.|||++..... . . . .. ..+.+|.+|||.+++++||||||||...++.++++
T Consensus 221 E~~~l~~l~~~~~~~~v~~vGPl~~~~~~-~-------~-~-~~-~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ 289 (451)
T PLN03004 221 ENRAIKAITEELCFRNIYPIGPLIVNGRI-E-------D-R-ND-NKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVI 289 (451)
T ss_pred HHHHHHHHHhcCCCCCEEEEeeeccCccc-c-------c-c-cc-chhhHHHHHHHhCCCCceEEEEecccccCCHHHHH
Confidence 9999999977532 239999999753110 0 0 0 01 12457999999998899999999999999999999
Q ss_pred HHHHHHHhCCCCEEEEEcCCCC-C----CCCCCCchHHHHhhcc-CcEEEeecchHhhhcCCCcceEEecCCchhHHHhh
Q 010684 325 EVAMGLVNSNHPFLWIIRPDLV-T----GETADLPAEFEVKAKE-KGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESL 398 (504)
Q Consensus 325 ~~~~a~~~~~~~~i~~~~~~~~-~----~~~~~~~~~~~~~~~~-nv~~~~~vpq~~lL~~~~~~~~I~HGG~gs~~eal 398 (504)
+++.+|+.++++|||++..... . .....+|++|++|..+ |+++.+|+||.+||+|+++++|||||||||+.||+
T Consensus 290 ela~gL~~s~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal 369 (451)
T PLN03004 290 EIAVGLEKSGQRFLWVVRNPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAV 369 (451)
T ss_pred HHHHHHHHCCCCEEEEEcCCccccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHH
Confidence 9999999999999999985311 0 0122378899988765 55667899999999999999999999999999999
Q ss_pred hcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCC-CCccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhCCCC
Q 010684 399 CSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDD-EDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHG 477 (504)
Q Consensus 399 ~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~-~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g 477 (504)
++|||||++|+++||+.||+++++++|+|+.++..+ ..++.++|+++|+++|+|+ +|++++++++++.+.++++||
T Consensus 370 ~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~~---~~r~~a~~~~~~a~~Av~~GG 446 (451)
T PLN03004 370 CAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGEC---PVRERTMAMKNAAELALTETG 446 (451)
T ss_pred HcCCCEEeccccccchhhHHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999966789999997411 2579999999999999988 899999999999999999999
Q ss_pred ChHH
Q 010684 478 SSSL 481 (504)
Q Consensus 478 ~~~~ 481 (504)
||.+
T Consensus 447 SS~~ 450 (451)
T PLN03004 447 SSHT 450 (451)
T ss_pred CCCC
Confidence 9764
No 21
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=1.1e-60 Score=481.65 Aligned_cols=420 Identities=26% Similarity=0.348 Sum_probs=313.3
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCC----CCCCCCCCCC
Q 010684 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIP----DGLPASSDES 84 (504)
Q Consensus 9 ~~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~----~~~~~~~~~~ 84 (504)
++.||+++|+|++||++|++.||+.|+.+|++|||++++.+...+..... ..++++|..++ +++|++.
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~-----~~~~i~~~~i~lP~~dGLP~g~--- 74 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNL-----FPDSIVFEPLTLPPVDGLPFGA--- 74 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhccccc-----CCCceEEEEecCCCcCCCCCcc---
Confidence 37899999999999999999999999999999999999888766654311 01147775553 5666652
Q ss_pred CCcccH----HHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEccccHHHHHh
Q 010684 85 PTAQDA----YSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMG 160 (504)
Q Consensus 85 ~~~~~~----~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~ 160 (504)
+...++ ...+......+ .+.++++++.. ++||||+|. +.|+..+|+++|||++.++++++.....
T Consensus 75 e~~~~l~~~~~~~~~~a~~~l-~~~l~~~L~~~---------~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~ 143 (446)
T PLN00414 75 ETASDLPNSTKKPIFDAMDLL-RDQIEAKVRAL---------KPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAM 143 (446)
T ss_pred cccccchhhHHHHHHHHHHHH-HHHHHHHHhcC---------CCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHH
Confidence 222122 11222222333 45555555432 789999995 8899999999999999999999987776
Q ss_pred HhhhhhhhhcCCCCccccccccchhhhhcccccccCCCCCC----CCCCC--CCcccccCCCchhHHHHHHHHhhhcccC
Q 010684 161 FKQFQTFKEKGLFPVKVLADKSCLTKEYLNSLIDWIPGMKD----IRIRD--LPSFIQSTDPKDMMFNLCVEATENASKA 234 (504)
Q Consensus 161 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (504)
+.+... .... | +|+++. ++..+ ++.++.. ....+.+..+....+
T Consensus 144 ~~~~~~--~~~~-~---------------------~pg~p~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 193 (446)
T PLN00414 144 VLAPRA--ELGF-P---------------------PPDYPLSKVALRGHDANVCSLFAN------SHELFGLITKGLKNC 193 (446)
T ss_pred HhCcHh--hcCC-C---------------------CCCCCCCcCcCchhhcccchhhcc------cHHHHHHHHHhhccC
Confidence 554110 0000 0 122221 11111 1121110 112233344555678
Q ss_pred cEEEEcChhhhhHHHHHHHhhhCCCceeeeCccccccccchhccccccccCCCccccchhhhccccCCCCCeeEEEecCC
Q 010684 235 SAIIIHTFDALEQQVLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGS 314 (504)
Q Consensus 235 ~~~l~~s~~~le~~~~~~~~~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS 314 (504)
+.+++|||.++|+.++++.+..++.+++.|||+...... . +....+++|.+|||.++.++||||||||
T Consensus 194 ~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGPl~~~~~~--~----------~~~~~~~~~~~WLD~q~~~sVvyvsfGS 261 (446)
T PLN00414 194 DVVSIRTCVELEGNLCDFIERQCQRKVLLTGPMLPEPQN--K----------SGKPLEDRWNHWLNGFEPGSVVFCAFGT 261 (446)
T ss_pred CEEEEechHHHHHHHHHHHHHhcCCCeEEEcccCCCccc--c----------cCcccHHHHHHHHhcCCCCceEEEeecc
Confidence 999999999999999999987654349999999753211 0 0011235699999999999999999999
Q ss_pred ccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCC-CCCCCCchHHHHhhccCcEEE-eecchHhhhcCCCcceEEecCCch
Q 010684 315 FIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVT-GETADLPAEFEVKAKEKGFVA-SWCPQEEVLKHPSIGGFLTHCGWN 392 (504)
Q Consensus 315 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~nv~~~-~~vpq~~lL~~~~~~~~I~HGG~g 392 (504)
......+.+.+++.+|+..|.+|+|++...... .....+|++|.++..++.+++ +|+||.+||+|+++++||||||||
T Consensus 262 ~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~n 341 (446)
T PLN00414 262 QFFFEKDQFQEFCLGMELTGLPFLIAVMPPKGSSTVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFG 341 (446)
T ss_pred cccCCHHHHHHHHHHHHHcCCCeEEEEecCCCcccchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchh
Confidence 999999999999999999999999999753211 112458899999998888887 799999999999999999999999
Q ss_pred hHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCC-CCccHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHH
Q 010684 393 SIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDD-EDVIRNEVEKLVREMMEG--EKGKQMRNKAMEWKGLA 469 (504)
Q Consensus 393 s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~-~~~~~~~l~~ai~~vl~~--~~~~~~~~~a~~l~~~~ 469 (504)
|++||+++|||||++|+++||+.||+++++++|+|+.+...+ +.+++++|+++|+++|.+ ++|+.||++++++++.+
T Consensus 342 S~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~ 421 (446)
T PLN00414 342 SMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETL 421 (446)
T ss_pred HHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999977899999996411 248999999999999986 34688999999999997
Q ss_pred HHHhCCCCChHHHHHHHHHHHHhc
Q 010684 470 EEAAAPHGSSSLNLDKLVNEILLS 493 (504)
Q Consensus 470 ~~~~~~~g~~~~~~~~~~~~~~~~ 493 (504)
.+ +||++.. +.+||++++..
T Consensus 422 ~~---~gg~ss~-l~~~v~~~~~~ 441 (446)
T PLN00414 422 VS---PGLLSGY-ADKFVEALENE 441 (446)
T ss_pred Hc---CCCcHHH-HHHHHHHHHHh
Confidence 54 5774544 89999999654
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=2.8e-52 Score=428.30 Aligned_cols=419 Identities=15% Similarity=0.191 Sum_probs=293.1
Q ss_pred cEEEEE-cCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCCCCCCC---CCCC---
Q 010684 11 VHAVCI-PSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPA---SSDE--- 83 (504)
Q Consensus 11 ~~il~~-~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~---~~~~--- 83 (504)
.||+.+ |.++.||+..+..++++|++|||+||++++..... ... . ...+++...++..... ....
T Consensus 21 ~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~-~~~----~---~~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (507)
T PHA03392 21 ARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVY-YAS----H---LCGNITEIDASLSVEYFKKLVKSSAV 92 (507)
T ss_pred ccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccc-ccc----C---CCCCEEEEEcCCChHHHHHHHhhhhH
Confidence 468765 88999999999999999999999999998753211 000 0 0125665555311110 0000
Q ss_pred CCC---ccc----HHHHHHHHHHhh----cchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHc-CCCeEEEc
Q 010684 84 SPT---AQD----AYSLGENIINNV----LLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQL-GLPIVLFF 151 (504)
Q Consensus 84 ~~~---~~~----~~~~~~~~~~~~----~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~l-giP~v~~~ 151 (504)
... ..+ .......+...| ..+.+.++++. ++. +||+||+|.+..|+..+|+++ ++|.|.++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~-~~~------kFDlvi~e~~~~c~~~la~~~~~~p~i~~s 165 (507)
T PHA03392 93 FRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIAN-KNN------KFDLLVTEAFLDYPLVFSHLFGDAPVIQIS 165 (507)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhc-CCC------ceeEEEecccchhHHHHHHHhCCCCEEEEc
Confidence 000 000 011111112222 01233344421 134 899999999888999999999 99998887
Q ss_pred cccHHHHHhHhhhhhhhhcCCCCccccccccchhhhhcccccccCCCCCCCCCCCCCccccc---CCCchhHHHHHH---
Q 010684 152 TISACSFMGFKQFQTFKEKGLFPVKVLADKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQS---TDPKDMMFNLCV--- 225 (504)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--- 225 (504)
+............+.+.+++|+|.......+ .++++.++.|+.......+... ....+...+++.
T Consensus 166 s~~~~~~~~~~~gg~p~~~syvP~~~~~~~~---------~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~ 236 (507)
T PHA03392 166 SGYGLAENFETMGAVSRHPVYYPNLWRSKFG---------NLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDT 236 (507)
T ss_pred CCCCchhHHHhhccCCCCCeeeCCcccCCCC---------CCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCC
Confidence 7655433222222256667788766322222 4455555544211110000000 111122233321
Q ss_pred -HHhhhcccCcEEEEcChhhhhHHHHHHHhhhCCCceeeeCccccccccchhccccccccCCCccccchhhhccccCCCC
Q 010684 226 -EATENASKASAIIIHTFDALEQQVLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEP 304 (504)
Q Consensus 226 -~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 304 (504)
...+...+.+++++|+.+.+|+| +|..|+ +++|||++.++.+. .+.++++.+|++.+ +
T Consensus 237 ~~~~~l~~~~~l~lvns~~~~d~~-----rp~~p~-v~~vGgi~~~~~~~--------------~~l~~~l~~fl~~~-~ 295 (507)
T PHA03392 237 PTIRELRNRVQLLFVNVHPVFDNN-----RPVPPS-VQYLGGLHLHKKPP--------------QPLDDYLEEFLNNS-T 295 (507)
T ss_pred CCHHHHHhCCcEEEEecCccccCC-----CCCCCC-eeeecccccCCCCC--------------CCCCHHHHHHHhcC-C
Confidence 13356678899999999999988 777666 99999998742111 12477899999986 4
Q ss_pred CeeEEEecCCcc---ccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHhhccCcEEEeecchHhhhcCCC
Q 010684 305 KSVIYVNFGSFI---FMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPS 381 (504)
Q Consensus 305 ~~~V~vs~GS~~---~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~lL~~~~ 381 (504)
+++|||||||.. ..+.+.+..+++++++++.+|||+++... .+ ..+|+|+++.+|+||.+||+|++
T Consensus 296 ~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~-------~~----~~~p~Nv~i~~w~Pq~~lL~hp~ 364 (507)
T PHA03392 296 NGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEV-------EA----INLPANVLTQKWFPQRAVLKHKN 364 (507)
T ss_pred CcEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCc-------Cc----ccCCCceEEecCCCHHHHhcCCC
Confidence 589999999985 35688899999999999999999998542 11 13478999999999999999999
Q ss_pred cceEEecCCchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCchHHHHHHH
Q 010684 382 IGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNK 461 (504)
Q Consensus 382 ~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~ 461 (504)
+++||||||.||++||+++|||||++|+++||+.||+|+ +++|+|+.++. ..+++++|.++|+++|+|+ +|++|
T Consensus 365 v~~fItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv-~~~G~G~~l~~--~~~t~~~l~~ai~~vl~~~---~y~~~ 438 (507)
T PHA03392 365 VKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKY-VELGIGRALDT--VTVSAAQLVLAIVDVIENP---KYRKN 438 (507)
T ss_pred CCEEEecCCcccHHHHHHcCCCEEECCCCccHHHHHHHH-HHcCcEEEecc--CCcCHHHHHHHHHHHhCCH---HHHHH
Confidence 999999999999999999999999999999999999999 78999999997 7899999999999999999 99999
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHhcC
Q 010684 462 AMEWKGLAEEAAAPHGSSSLNLDKLVNEILLSN 494 (504)
Q Consensus 462 a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 494 (504)
|+++++.+++. +-+..+.+...+|.+.+..
T Consensus 439 a~~ls~~~~~~---p~~~~~~av~~iE~v~r~~ 468 (507)
T PHA03392 439 LKELRHLIRHQ---PMTPLHKAIWYTEHVIRNK 468 (507)
T ss_pred HHHHHHHHHhC---CCCHHHHHHHHHHHHHhCC
Confidence 99999999973 4456677778888887655
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=5.8e-53 Score=440.75 Aligned_cols=413 Identities=23% Similarity=0.346 Sum_probs=241.9
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCCCCcc---
Q 010684 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTAQ--- 88 (504)
Q Consensus 12 ~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~--- 88 (504)
||+++|. +.||+.++..|+++|++|||+||++++.... .+... ....+++..++...+..........
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSS-SLNPS-------KPSNIRFETYPDPYPEEEFEEIFPEFIS 72 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHH-T-------------S-CCEEEE-----TT------TTHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccc-ccccc-------cccceeeEEEcCCcchHHHhhhhHHHHH
Confidence 6888885 7899999999999999999999999875422 12211 0125666666644433210000000
Q ss_pred ----------cHHHHHHHH-------HHhhcchHH--HHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEE
Q 010684 89 ----------DAYSLGENI-------INNVLLHPF--LDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVL 149 (504)
Q Consensus 89 ----------~~~~~~~~~-------~~~~~~~~~--~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~lgiP~v~ 149 (504)
.....+... ...| ...+ .++++.+++. ++|++|+|.+..|+..+|+.+|+|.+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C-~~~l~d~~l~~~l~~~------~fDlvI~d~f~~c~~~la~~l~iP~i~ 145 (500)
T PF00201_consen 73 KFFSESSFANSFWEMFKMLNAFFDFFSKSC-EDLLSDPELMEQLKSE------KFDLVISDAFDPCGLALAHYLGIPVII 145 (500)
T ss_dssp HHHHHHCCHHHHHHHHHHHHCHHHS----E---EEEETTSTTHHHHH------HHCT-EEEEEESSHHHHHHHHHHTHHH
T ss_pred HHhhhcccchhHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHhh------ccccceEeeccchhHHHHHHhcCCeEE
Confidence 011111111 1111 1111 1233344444 899999999988999999999999988
Q ss_pred EccccHHHHHhHhhhhhhhhcCCCCccccccccchhhhhcccccccCCCCCCCCCCCC----CcccccC---CCchhHHH
Q 010684 150 FFTISACSFMGFKQFQTFKEKGLFPVKVLADKSCLTKEYLNSLIDWIPGMKDIRIRDL----PSFIQST---DPKDMMFN 222 (504)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~---~~~~~~~~ 222 (504)
+.+..............+.+++|+|.......+ .++++.++.|+..... ....... ...+....
T Consensus 146 ~~s~~~~~~~~~~~~g~p~~psyvP~~~s~~~~---------~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (500)
T PF00201_consen 146 ISSSTPMYDLSSFSGGVPSPPSYVPSMFSDFSD---------RMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGF 216 (500)
T ss_dssp HHHCCSCSCCTCCTSCCCTSTTSTTCBCCCSGT---------TSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-
T ss_pred EecccccchhhhhccCCCCChHHhccccccCCC---------ccchhhhhhhhhhhhhhccccccchhhHHHHHhhhccc
Confidence 665443322222222344566777765222222 4455555544211100 0000000 00000000
Q ss_pred HHHHHhhhcccCcEEEEcChhhhhHHHHHHHhhhCCCceeeeCccccccccchhccccccccCCCccccchhhhccccCC
Q 010684 223 LCVEATENASKASAIIIHTFDALEQQVLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCK 302 (504)
Q Consensus 223 ~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 302 (504)
. ....+...+.+++++|+++.+++| +|..|+ +++||+++..+++ +.+.++.+|++..
T Consensus 217 ~-~~~~~~~~~~~l~l~ns~~~ld~p-----rp~~p~-v~~vGgl~~~~~~----------------~l~~~~~~~~~~~ 273 (500)
T PF00201_consen 217 P-FSFRELLSNASLVLINSHPSLDFP-----RPLLPN-VVEVGGLHIKPAK----------------PLPEELWNFLDSS 273 (500)
T ss_dssp G-GGCHHHHHHHHHCCSSTEEE---------HHHHCT-STTGCGC-S--------------------TCHHHHHHHTSTT
T ss_pred c-cccHHHHHHHHHHhhhccccCcCC-----cchhhc-ccccCcccccccc----------------ccccccchhhhcc
Confidence 0 011233445678899999888877 898887 9999999875333 2467788999984
Q ss_pred CCCeeEEEecCCccc-cCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHhhccCcEEEeecchHhhhcCCC
Q 010684 303 EPKSVIYVNFGSFIF-MNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPS 381 (504)
Q Consensus 303 ~~~~~V~vs~GS~~~-~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~lL~~~~ 381 (504)
.++++|||||||... ++.+..+.+++++++++++|||++++. .+ +.+++|+++.+|+||.+||.|++
T Consensus 274 ~~~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~--------~~----~~l~~n~~~~~W~PQ~~lL~hp~ 341 (500)
T PF00201_consen 274 GKKGVVYVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGE--------PP----ENLPKNVLIVKWLPQNDLLAHPR 341 (500)
T ss_dssp TTTEEEEEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCS--------HG----CHHHTTEEEESS--HHHHHTSTT
T ss_pred CCCCEEEEecCcccchhHHHHHHHHHHHHhhCCCccccccccc--------cc----ccccceEEEeccccchhhhhccc
Confidence 578999999999874 444558899999999999999999863 11 23478999999999999999999
Q ss_pred cceEEecCCchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCchHHHHHHH
Q 010684 382 IGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNK 461 (504)
Q Consensus 382 ~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~ 461 (504)
+++||||||+||+.||+++|||||++|+++||+.||+|+ ++.|+|+.++. ..+|.++|.++|+++|+|+ +|++|
T Consensus 342 v~~fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~-~~~G~g~~l~~--~~~~~~~l~~ai~~vl~~~---~y~~~ 415 (500)
T PF00201_consen 342 VKLFITHGGLNSTQEALYHGVPMLGIPLFGDQPRNAARV-EEKGVGVVLDK--NDLTEEELRAAIREVLENP---SYKEN 415 (500)
T ss_dssp EEEEEES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHH-HHTTSEEEEGG--GC-SHHHHHHHHHHHHHSH---HHHHH
T ss_pred ceeeeeccccchhhhhhhccCCccCCCCcccCCccceEE-EEEeeEEEEEe--cCCcHHHHHHHHHHHHhhh---HHHHH
Confidence 999999999999999999999999999999999999999 78899999997 8999999999999999999 99999
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHhc
Q 010684 462 AMEWKGLAEEAAAPHGSSSLNLDKLVNEILLS 493 (504)
Q Consensus 462 a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 493 (504)
|+++++.++.. .-+..+.+..-+|.+.+.
T Consensus 416 a~~ls~~~~~~---p~~p~~~~~~~ie~v~~~ 444 (500)
T PF00201_consen 416 AKRLSSLFRDR---PISPLERAVWWIEYVARH 444 (500)
T ss_dssp HHHHHHTTT-----------------------
T ss_pred HHHHHHHHhcC---CCCHHHHHHHHHHHHHhc
Confidence 99999999863 445566666677776664
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=1.2e-43 Score=359.10 Aligned_cols=381 Identities=19% Similarity=0.256 Sum_probs=264.6
Q ss_pred EcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCCC-CcccHHHHH
Q 010684 16 IPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESP-TAQDAYSLG 94 (504)
Q Consensus 16 ~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~-~~~~~~~~~ 94 (504)
+.+|+.||++|++.||++|+++||+|+|++++.+.+.+++. |+.|..++........... ...+...++
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~----------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAA----------GAEFVLYGSALPPPDNPPENTEEEPIDII 70 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHc----------CCEEEecCCcCccccccccccCcchHHHH
Confidence 35799999999999999999999999999999999999887 8999988865433100000 002333344
Q ss_pred HHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEccccHHHHHhHhhhhhhhhcCCCC
Q 010684 95 ENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTFKEKGLFP 174 (504)
Q Consensus 95 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p 174 (504)
..+...+ ...+..+.+.+.+. +||+||+|.+++++..+|+++|||+|.+++.+.... .++.. ..|
T Consensus 71 ~~~~~~~-~~~~~~l~~~~~~~------~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~----~~~~~----~~~ 135 (392)
T TIGR01426 71 EKLLDEA-EDVLPQLEEAYKGD------RPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANE----EFEEM----VSP 135 (392)
T ss_pred HHHHHHH-HHHHHHHHHHhcCC------CCCEEEECCccHHHHHHHHHhCCCEEEEehhhcccc----ccccc----ccc
Confidence 4444444 44555555555544 899999999888999999999999998865432110 00000 001
Q ss_pred ccccccccchhhhhcccccccCCCCCCCCCCCCCcccccCCCchhHHHHHHHHh------h--hcccCcEEEEcChhhhh
Q 010684 175 VKVLADKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEAT------E--NASKASAIIIHTFDALE 246 (504)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~l~~s~~~le 246 (504)
.. .. .+...+.. +. .. ....+.......+.. . .....+..+..+.+.|+
T Consensus 136 ~~----~~---------~~~~~~~~-~~---~~------~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~ 192 (392)
T TIGR01426 136 AG----EG---------SAEEGAIA-ER---GL------AEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQ 192 (392)
T ss_pred cc----hh---------hhhhhccc-cc---hh------HHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhC
Confidence 11 00 00000000 00 00 000011111111110 0 01122335666666665
Q ss_pred HHHHHHHhhhCCCceeeeCccccccccchhccccccccCCCccccchhhhccccCCCCCeeEEEecCCccccCHHHHHHH
Q 010684 247 QQVLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEV 326 (504)
Q Consensus 247 ~~~~~~~~~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~ 326 (504)
++ .+.+|.+++++||+...... ...|....+++++||||+||+.....+.+..+
T Consensus 193 ~~-----~~~~~~~~~~~Gp~~~~~~~---------------------~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~ 246 (392)
T TIGR01426 193 PA-----GETFDDSFTFVGPCIGDRKE---------------------DGSWERPGDGRPVVLISLGTVFNNQPSFYRTC 246 (392)
T ss_pred CC-----ccccCCCeEEECCCCCCccc---------------------cCCCCCCCCCCCEEEEecCccCCCCHHHHHHH
Confidence 54 56678779999998763111 11355555578899999999866666688899
Q ss_pred HHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHhhccCcEEEeecchHhhhcCCCcceEEecCCchhHHHhhhcCCcEEe
Q 010684 327 AMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMIC 406 (504)
Q Consensus 327 ~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~ 406 (504)
++++.+.+.+++|..+..... .. ....++|+.+.+|+||.++|+++++ +|||||+||++||+++|+|+|+
T Consensus 247 ~~al~~~~~~~i~~~g~~~~~-------~~-~~~~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~ 316 (392)
T TIGR01426 247 VEAFRDLDWHVVLSVGRGVDP-------AD-LGELPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVA 316 (392)
T ss_pred HHHHhcCCCeEEEEECCCCCh-------hH-hccCCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEe
Confidence 999999999999998754210 11 1234689999999999999999998 9999999999999999999999
Q ss_pred cCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHH
Q 010684 407 WPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKL 486 (504)
Q Consensus 407 ~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~ 486 (504)
+|...||+.||+++ +++|+|..+.. ..+++++|.++|+++|+|+ +|+++++++++.+.+. +| ...+.++
T Consensus 317 ~p~~~dq~~~a~~l-~~~g~g~~l~~--~~~~~~~l~~ai~~~l~~~---~~~~~~~~l~~~~~~~---~~--~~~aa~~ 385 (392)
T TIGR01426 317 VPQGADQPMTARRI-AELGLGRHLPP--EEVTAEKLREAVLAVLSDP---RYAERLRKMRAEIREA---GG--ARRAADE 385 (392)
T ss_pred cCCcccHHHHHHHH-HHCCCEEEecc--ccCCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHc---CC--HHHHHHH
Confidence 99999999999999 78999999986 7899999999999999999 8999999999999963 33 4566666
Q ss_pred HHHHH
Q 010684 487 VNEIL 491 (504)
Q Consensus 487 ~~~~~ 491 (504)
|+.+.
T Consensus 386 i~~~~ 390 (392)
T TIGR01426 386 IEGFL 390 (392)
T ss_pred HHHhh
Confidence 66654
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=2.4e-44 Score=365.89 Aligned_cols=385 Identities=14% Similarity=0.125 Sum_probs=257.5
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCCC-----
Q 010684 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESP----- 85 (504)
Q Consensus 11 ~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~----- 85 (504)
|||+|+++|+.||++|++.||++|+++||+|+|++++.+...++.. |++|..+++......+...
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~----------G~~~~~~~~~~~~~~~~~~~~~~~ 70 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAA----------GLEFVPVGGDPDELLASPERNAGL 70 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHc----------CCceeeCCCCHHHHHhhhhhcccc
Confidence 6999999999999999999999999999999999999888888876 8999988764432110000
Q ss_pred ---CcccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEccccHHHHHhHh
Q 010684 86 ---TAQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMGFK 162 (504)
Q Consensus 86 ---~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~ 162 (504)
...........+.... ...++++.+.+.+. ++|+||+|.+++++..+|+++|||++.+++++........
T Consensus 71 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~ 143 (401)
T cd03784 71 LLLGPGLLLGALRLLRREA-EAMLDDLVAAARDW------GPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAFP 143 (401)
T ss_pred cccchHHHHHHHHHHHHHH-HHHHHHHHHHhccc------CCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccCC
Confidence 1112222333343444 55666666665544 9999999998889999999999999999887643211100
Q ss_pred hhhhhhhcCCCCccccccccchhhhhcccccccCCCCCCCCCCCCCcccccCCCchhHHHHHHHHhhhc------ccCcE
Q 010684 163 QFQTFKEKGLFPVKVLADKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENA------SKASA 236 (504)
Q Consensus 163 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 236 (504)
+.. +.. ....+. .+. ...+.. ........ ..+..... ...+.
T Consensus 144 ~~~--------~~~---~~~~~~--~~~-~~~~~~-----------------~~~~~~~~-~~~~~gl~~~~~~~~~~~~ 191 (401)
T cd03784 144 PPL--------GRA---NLRLYA--LLE-AELWQD-----------------LLGAWLRA-RRRRLGLPPLSLLDGSDVP 191 (401)
T ss_pred Ccc--------chH---HHHHHH--HHH-HHHHHH-----------------HHHHHHHH-HHHhcCCCCCcccccCCCc
Confidence 000 000 000000 000 000000 00000000 00000000 01112
Q ss_pred EEEcChhhhhHHHHHHHhhhCCCceeeeCccccccccchhccccccccCCCccccchhhhccccCCCCCeeEEEecCCcc
Q 010684 237 IIIHTFDALEQQVLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFI 316 (504)
Q Consensus 237 ~l~~s~~~le~~~~~~~~~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~ 316 (504)
.+....+.+.++ ++.++.+..++|+.....+.. +..++++..|++. ++++||||+||..
T Consensus 192 ~~~~~~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~--------------~~~~~~~~~~~~~--~~~~v~v~~Gs~~ 250 (401)
T cd03784 192 ELYGFSPAVLPP-----PPDWPRFDLVTGYGFRDVPYN--------------GPPPPELWLFLAA--GRPPVYVGFGSMV 250 (401)
T ss_pred EEEecCcccCCC-----CCCccccCcEeCCCCCCCCCC--------------CCCCHHHHHHHhC--CCCcEEEeCCCCc
Confidence 222222222222 466777678886433321110 1235567788875 5679999999987
Q ss_pred c-cCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHhhccCcEEEeecchHhhhcCCCcceEEecCCchhHH
Q 010684 317 F-MNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIV 395 (504)
Q Consensus 317 ~-~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~I~HGG~gs~~ 395 (504)
. ...+.+..++++++..+.++||+++..... . ...++|+++.+|+||.++|+++++ ||||||+||++
T Consensus 251 ~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~~-------~---~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~ 318 (401)
T cd03784 251 VRDPEALARLDVEAVATLGQRAILSLGWGGLG-------A---EDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTA 318 (401)
T ss_pred ccCHHHHHHHHHHHHHHcCCeEEEEccCcccc-------c---cCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHH
Confidence 5 445678889999999999999998865211 0 234689999999999999999999 99999999999
Q ss_pred HhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhCC
Q 010684 396 ESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAP 475 (504)
Q Consensus 396 eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~ 475 (504)
|++++|||+|++|+..||+.||+++ +++|+|+.+.. ..+++++|.++|+++|+++ +++++++.++.++..
T Consensus 319 eal~~GvP~v~~P~~~dQ~~~a~~~-~~~G~g~~l~~--~~~~~~~l~~al~~~l~~~----~~~~~~~~~~~~~~~--- 388 (401)
T cd03784 319 AALRAGVPQLVVPFFGDQPFWAARV-AELGAGPALDP--RELTAERLAAALRRLLDPP----SRRRAAALLRRIREE--- 388 (401)
T ss_pred HHHHcCCCEEeeCCCCCcHHHHHHH-HHCCCCCCCCc--ccCCHHHHHHHHHHHhCHH----HHHHHHHHHHHHHhc---
Confidence 9999999999999999999999999 88999999986 6689999999999999855 566677777777642
Q ss_pred CCChHHHHHHHHHH
Q 010684 476 HGSSSLNLDKLVNE 489 (504)
Q Consensus 476 ~g~~~~~~~~~~~~ 489 (504)
+| ...+.++|++
T Consensus 389 ~g--~~~~~~~ie~ 400 (401)
T cd03784 389 DG--VPSAADVIER 400 (401)
T ss_pred cC--HHHHHHHHhh
Confidence 33 4555555553
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=1e-42 Score=348.28 Aligned_cols=400 Identities=20% Similarity=0.221 Sum_probs=261.3
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCCCCc-c
Q 010684 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTA-Q 88 (504)
Q Consensus 10 ~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~-~ 88 (504)
+|||+++..|+.||++|+++||++|.++||+|+|++++.+.+.++++ |+.|..++....+.. ..+.. .
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a----------g~~f~~~~~~~~~~~-~~~~~~~ 69 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA----------GLAFVAYPIRDSELA-TEDGKFA 69 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh----------CcceeeccccCChhh-hhhhhhh
Confidence 58999999999999999999999999999999999999999999998 777777765322110 01111 1
Q ss_pred cHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEccccHHHHHhHhhhhhhh
Q 010684 89 DAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTFK 168 (504)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 168 (504)
....+.. ..... ...+.++++-+.+. .+|+++.|.....+ .+++..++|++................
T Consensus 70 ~~~~~~~-~~~~~-~~~~~~~~~~~~e~------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 136 (406)
T COG1819 70 GVKSFRR-LLQQF-KKLIRELLELLREL------EPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGLP---- 136 (406)
T ss_pred ccchhHH-Hhhhh-hhhhHHHHHHHHhc------chhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccccC----
Confidence 1122222 22333 34455655556655 89999999766544 999999999998766543322111100
Q ss_pred hcCCCCccccccccchhhhhcccccccCCCCCCCCCCCCCcccccCCCchhHHHHHHHHhhhcccCcEEEEcChhhhhHH
Q 010684 169 EKGLFPVKVLADKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALEQQ 248 (504)
Q Consensus 169 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~ 248 (504)
.++.. ..+.+... ....++.+.. ......... .................-..+..+-+.++..
T Consensus 137 ---~~~~~---~~~~~~~~----~~~~~~~~~~--~~~~~~~~~-----~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (406)
T COG1819 137 ---LPPVG---IAGKLPIP----LYPLPPRLVR--PLIFARSWL-----PKLVVRRNLGLELGLPNIRRLFASGPLLEIA 199 (406)
T ss_pred ---ccccc---cccccccc----ccccChhhcc--ccccchhhh-----hhhhhhhhccccccccchHHHhcCCCCcccc
Confidence 00000 00000000 0000000000 000000000 0000000000000000000111111111111
Q ss_pred HHHHHh---hhCCCceeeeCccccccccchhccccccccCCCccccchhhhccccCCCCCeeEEEecCCccccCHHHHHH
Q 010684 249 VLNALS---FMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIE 325 (504)
Q Consensus 249 ~~~~~~---~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~ 325 (504)
+.+... ...|....++||+...+ ..++..|+.. ++++||+|+||.... .++++.
T Consensus 200 ~~~~~~~~~~~~p~~~~~~~~~~~~~--------------------~~~~~~~~~~--d~~~vyvslGt~~~~-~~l~~~ 256 (406)
T COG1819 200 YTDVLFPPGDRLPFIGPYIGPLLGEA--------------------ANELPYWIPA--DRPIVYVSLGTVGNA-VELLAI 256 (406)
T ss_pred ccccccCCCCCCCCCcCccccccccc--------------------cccCcchhcC--CCCeEEEEcCCcccH-HHHHHH
Confidence 111100 12344466667665532 2222344333 577999999999755 889999
Q ss_pred HHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHhhccCcEEEeecchHhhhcCCCcceEEecCCchhHHHhhhcCCcEE
Q 010684 326 VAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMI 405 (504)
Q Consensus 326 ~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v 405 (504)
+++++..++.++|..++... . -...+|+|+++.+|+||.++|+++++ ||||||+||++|||++|||+|
T Consensus 257 ~~~a~~~l~~~vi~~~~~~~-~---------~~~~~p~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~v 324 (406)
T COG1819 257 VLEALADLDVRVIVSLGGAR-D---------TLVNVPDNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLV 324 (406)
T ss_pred HHHHHhcCCcEEEEeccccc-c---------ccccCCCceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEE
Confidence 99999999999999987621 0 11245799999999999999999999 999999999999999999999
Q ss_pred ecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhCCCCChHHHHHH
Q 010684 406 CWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDK 485 (504)
Q Consensus 406 ~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~ 485 (504)
++|...||+.||.|+ +++|+|..++. +.++++.|+++|+++|+|+ .|+++++++++.++++ +| ...+.+
T Consensus 325 v~P~~~DQ~~nA~rv-e~~G~G~~l~~--~~l~~~~l~~av~~vL~~~---~~~~~~~~~~~~~~~~---~g--~~~~a~ 393 (406)
T COG1819 325 VIPDGADQPLNAERV-EELGAGIALPF--EELTEERLRAAVNEVLADD---SYRRAAERLAEEFKEE---DG--PAKAAD 393 (406)
T ss_pred EecCCcchhHHHHHH-HHcCCceecCc--ccCCHHHHHHHHHHHhcCH---HHHHHHHHHHHHhhhc---cc--HHHHHH
Confidence 999999999999999 89999999997 8999999999999999999 9999999999999985 45 678889
Q ss_pred HHHHHHhcCcC
Q 010684 486 LVNEILLSNKH 496 (504)
Q Consensus 486 ~~~~~~~~~~~ 496 (504)
.|++..++++.
T Consensus 394 ~le~~~~~~~~ 404 (406)
T COG1819 394 LLEEFAREKKK 404 (406)
T ss_pred HHHHHHhcccC
Confidence 99987776543
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=3.2e-40 Score=344.88 Aligned_cols=429 Identities=29% Similarity=0.443 Sum_probs=263.1
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHHhhhcCCCC--CCCCCeeEEeCCCCCCCCCCCCCCc
Q 010684 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSL--DGLPSFRFEAIPDGLPASSDESPTA 87 (504)
Q Consensus 10 ~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~l~~~~~~~~~~~~~~ 87 (504)
+.+++++++|++||++|+..+|+.|+++||+||++++..+............. .....+.+....+.++.. +...
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 81 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIPDGLPEG---WEDD 81 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcccceeeeeeecChHHhhhhhhhhccc---hHHH
Confidence 56899999999999999999999999999999999987655433221000000 000012221222233333 1111
Q ss_pred -ccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcC-CCeEEEccccHHHHHhHhhhh
Q 010684 88 -QDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLG-LPIVLFFTISACSFMGFKQFQ 165 (504)
Q Consensus 88 -~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~lg-iP~v~~~~~~~~~~~~~~~~~ 165 (504)
.........+...+ ...+.+....+... ...++|++|+|.+..+...+|...+ ++...+.+..........+.+
T Consensus 82 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~ 157 (496)
T KOG1192|consen 82 DLDISESLLELNKTC-EDLLRDPLEKLLLL---KSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSP 157 (496)
T ss_pred HHHHHHHHHHHHHHH-HHHHhchHHHHHHh---hcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCc
Confidence 01111123333444 44555433332221 0114999999998667777777765 888888777766554333222
Q ss_pred hhhhcCCCCccccccccchhhhhcccccccCCCCCCCCCCCCCcccccCCCchhHHHHH-----------HHHhhhcccC
Q 010684 166 TFKEKGLFPVKVLADKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLC-----------VEATENASKA 234 (504)
Q Consensus 166 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~ 234 (504)
..+.|........ ..+.+..+..++....++................ ....+...+.
T Consensus 158 ----~~~~p~~~~~~~~--------~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 225 (496)
T KOG1192|consen 158 ----LSYVPSPFSLSSG--------DDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNA 225 (496)
T ss_pred ----ccccCcccCcccc--------ccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcC
Confidence 2244333100000 0111111222111111111111100000000011 1111334455
Q ss_pred cEEEEcChhhhhHHHHHHHhhhCCCceeeeCccccccccchhccccccccCCCccccchhhhccccCCCCC--eeEEEec
Q 010684 235 SAIIIHTFDALEQQVLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPK--SVIYVNF 312 (504)
Q Consensus 235 ~~~l~~s~~~le~~~~~~~~~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~V~vs~ 312 (504)
+..++|+.+.++.. .++..|+ +++|||++....+.. .+.+++|++..+.. ++|||||
T Consensus 226 ~~~~ln~~~~~~~~----~~~~~~~-v~~IG~l~~~~~~~~----------------~~~~~~wl~~~~~~~~~vvyvSf 284 (496)
T KOG1192|consen 226 SFIFLNSNPLLDFE----PRPLLPK-VIPIGPLHVKDSKQK----------------SPLPLEWLDILDESRHSVVYISF 284 (496)
T ss_pred eEEEEccCcccCCC----CCCCCCC-ceEECcEEecCcccc----------------ccccHHHHHHHhhccCCeEEEEC
Confidence 57777777655552 1344555 999999998622210 11344566554343 8999999
Q ss_pred CCcc---ccCHHHHHHHHHHHHhC-CCCEEEEEcCCCCCCCCCCCchHHHHhhccCcEEEeecchHhh-hcCCCcceEEe
Q 010684 313 GSFI---FMNKQQLIEVAMGLVNS-NHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEV-LKHPSIGGFLT 387 (504)
Q Consensus 313 GS~~---~~~~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~l-L~~~~~~~~I~ 387 (504)
||+. .++.+....++.+++.+ +++|||++..... ..+++++.++.++||...+|+||.++ |.|+++++|||
T Consensus 285 GS~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~~~----~~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvT 360 (496)
T KOG1192|consen 285 GSMVNSADLPEEQKKELAKALESLQGVTFLWKYRPDDS----IYFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVT 360 (496)
T ss_pred CcccccccCCHHHHHHHHHHHHhCCCceEEEEecCCcc----hhhhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEE
Confidence 9998 78999999999999999 8889999986521 00222222112458888899999998 69999999999
Q ss_pred cCCchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Q 010684 388 HCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKG 467 (504)
Q Consensus 388 HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~ 467 (504)
|||+||++|++++|||||++|+++||+.||+++++++++++... .+++.+++..++.++++++ +|+++++++++
T Consensus 361 HgG~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~---~~~~~~~~~~~~~~il~~~---~y~~~~~~l~~ 434 (496)
T KOG1192|consen 361 HGGWNSTLESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDK---RDLVSEELLEAIKEILENE---EYKEAAKRLSE 434 (496)
T ss_pred CCcccHHHHHHhcCCceecCCccccchhHHHHHHhCCCEEEEeh---hhcCcHHHHHHHHHHHcCh---HHHHHHHHHHH
Confidence 99999999999999999999999999999999965655555555 5677777999999999999 99999999999
Q ss_pred HHHHHhCCCCChHHHHHHHHHHHHh
Q 010684 468 LAEEAAAPHGSSSLNLDKLVNEILL 492 (504)
Q Consensus 468 ~~~~~~~~~g~~~~~~~~~~~~~~~ 492 (504)
..++ ...+. ..+..-++...+
T Consensus 435 ~~~~---~p~~~-~~~~~~~e~~~~ 455 (496)
T KOG1192|consen 435 ILRD---QPISP-ELAVKWVEFVAR 455 (496)
T ss_pred HHHc---CCCCH-HHHHHHHHHHHh
Confidence 9986 35555 555533344443
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.95 E-value=2.5e-25 Score=220.13 Aligned_cols=321 Identities=17% Similarity=0.206 Sum_probs=198.6
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCCC-CCCCCCCCCCCcccH
Q 010684 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPD-GLPASSDESPTAQDA 90 (504)
Q Consensus 12 ~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~-~~~~~~~~~~~~~~~ 90 (504)
+|+|...|+-||++|.+++|++|.++||+|+|++.....+ .. .++.+ ++.+..++. .+... .....+
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e---~~----l~~~~-g~~~~~~~~~~l~~~----~~~~~~ 70 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIE---KT----IIEKE-NIPYYSISSGKLRRY----FDLKNI 70 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccc---cc----cCccc-CCcEEEEeccCcCCC----chHHHH
Confidence 6888888888999999999999999999999999665432 11 11111 677776652 12111 011111
Q ss_pred HHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc--hHHHHHHHcCCCeEEEccccHHHHHhHhhhhhhh
Q 010684 91 YSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLP--FTITAAQQLGLPIVLFFTISACSFMGFKQFQTFK 168 (504)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 168 (504)
...+... ..+...++.+++. +||+||+...+. .+..+|+.+|+|++..-...
T Consensus 71 ~~~~~~~------~~~~~~~~i~~~~------kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~-------------- 124 (352)
T PRK12446 71 KDPFLVM------KGVMDAYVRIRKL------KPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDM-------------- 124 (352)
T ss_pred HHHHHHH------HHHHHHHHHHHhc------CCCEEEecCchhhHHHHHHHHHcCCCEEEECCCC--------------
Confidence 1222212 1122222233333 999999987554 47899999999998843211
Q ss_pred hcCCCCccccccccchhhhhcccccccCCCCCCCCCCCCCcccccCCCchhHHHHHHHHhhhcccCcEEEEcChhhhhHH
Q 010684 169 EKGLFPVKVLADKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALEQQ 248 (504)
Q Consensus 169 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~ 248 (504)
.+++.+ +.+. +.++.++ .++++ .
T Consensus 125 ---------------------------~~g~~n--------------------r~~~------~~a~~v~-~~f~~---~ 147 (352)
T PRK12446 125 ---------------------------TPGLAN--------------------KIAL------RFASKIF-VTFEE---A 147 (352)
T ss_pred ---------------------------CccHHH--------------------HHHH------HhhCEEE-EEccc---h
Confidence 111110 1111 1122222 22221 1
Q ss_pred HHHHHhhhCC-CceeeeCccccccccchhccccccccCCCccccchhhhccccCCCCCeeEEEecCCccccCH-HHHHHH
Q 010684 249 VLNALSFMFP-HHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNK-QQLIEV 326 (504)
Q Consensus 249 ~~~~~~~~~p-~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~-~~~~~~ 326 (504)
....+ .+++++|+.....-... ......+.+.-.+++++|+|..||...... +.+..+
T Consensus 148 -----~~~~~~~k~~~tG~Pvr~~~~~~---------------~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~ 207 (352)
T PRK12446 148 -----AKHLPKEKVIYTGSPVREEVLKG---------------NREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREA 207 (352)
T ss_pred -----hhhCCCCCeEEECCcCCcccccc---------------cchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHH
Confidence 12222 35889998765311100 011111223333467899999999974333 444445
Q ss_pred HHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHhhccCcEEEeec-chH-hhhcCCCcceEEecCCchhHHHhhhcCCcE
Q 010684 327 AMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWC-PQE-EVLKHPSIGGFLTHCGWNSIVESLCSGVPM 404 (504)
Q Consensus 327 ~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~v-pq~-~lL~~~~~~~~I~HGG~gs~~eal~~GvP~ 404 (504)
+..+.. +.+++|++|... +.... .. ..++.+..|+ +.+ ++|.++|+ +|||||.+|+.|++++|+|+
T Consensus 208 l~~l~~-~~~vv~~~G~~~-------~~~~~-~~-~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~ 275 (352)
T PRK12446 208 LPELLL-KYQIVHLCGKGN-------LDDSL-QN-KEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPM 275 (352)
T ss_pred HHhhcc-CcEEEEEeCCch-------HHHHH-hh-cCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCE
Confidence 544432 478899988542 11101 11 1355666777 444 69999999 99999999999999999999
Q ss_pred EecCCC-----CCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCchHHHHHHHHHH
Q 010684 405 ICWPFT-----GDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAME 464 (504)
Q Consensus 405 v~~P~~-----~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~ 464 (504)
|++|+. .||..||+.+ ++.|+|..+.. .+++++.|.++|.++++|++ .|++++++
T Consensus 276 I~iP~~~~~~~~~Q~~Na~~l-~~~g~~~~l~~--~~~~~~~l~~~l~~ll~~~~--~~~~~~~~ 335 (352)
T PRK12446 276 LLIPLSKFASRGDQILNAESF-ERQGYASVLYE--EDVTVNSLIKHVEELSHNNE--KYKTALKK 335 (352)
T ss_pred EEEcCCCCCCCchHHHHHHHH-HHCCCEEEcch--hcCCHHHHHHHHHHHHcCHH--HHHHHHHH
Confidence 999984 4899999999 78899999986 78999999999999998863 45554444
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.92 E-value=3.9e-23 Score=203.46 Aligned_cols=308 Identities=18% Similarity=0.208 Sum_probs=191.9
Q ss_pred cEEEEEcCC-CcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCC-CCCCCcc
Q 010684 11 VHAVCIPSP-FQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASS-DESPTAQ 88 (504)
Q Consensus 11 ~~il~~~~~-~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~-~~~~~~~ 88 (504)
|||+|...+ +.||+..+++||++| +||+|+|++.....+.+.. .+....+++-..... ...+...
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~ 67 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP-----------RFPVREIPGLGPIQENGRLDRWK 67 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc-----------ccCEEEccCceEeccCCccchHH
Confidence 799999988 679999999999999 5999999998765544422 233344432111110 0111111
Q ss_pred cHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEccccHHHHHhHhhhhhhh
Q 010684 89 DAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTFK 168 (504)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 168 (504)
........ .... ...++++.+.+.+. +||+||+|. .+.+..+|+..|||++.+..........
T Consensus 68 ~~~~~~~~-~~~~-~~~~~~~~~~l~~~------~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~~~~-------- 130 (318)
T PF13528_consen 68 TVRNNIRW-LARL-ARRIRREIRWLREF------RPDLVISDF-YPLAALAARRAGIPVIVISNQYWFLHPN-------- 130 (318)
T ss_pred HHHHHHHh-hHHH-HHHHHHHHHHHHhc------CCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHccccc--------
Confidence 11111111 1122 34555666666666 999999995 5557899999999999876544211000
Q ss_pred hcCCCCccccccccchhhhhcccccccCCCCCCCCCCCCCcccccCCCchhHHHHHHHHhhh--cccCcEEEEcChhhhh
Q 010684 169 EKGLFPVKVLADKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATEN--ASKASAIIIHTFDALE 246 (504)
Q Consensus 169 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~s~~~le 246 (504)
.+++. .......+.+.... ...+...+.-++. .
T Consensus 131 -------------------------~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~- 165 (318)
T PF13528_consen 131 -------------------------FWLPW------------------DQDFGRLIERYIDRYHFPPADRRLALSFY-P- 165 (318)
T ss_pred -------------------------CCcch------------------hhhHHHHHHHhhhhccCCcccceecCCcc-c-
Confidence 00000 00001111111111 2233333433332 0
Q ss_pred HHHHHHHhhhCCCceeeeCccccccccchhccccccccCCCccccchhhhccccCCCCCeeEEEecCCccccCHHHHHHH
Q 010684 247 QQVLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEV 326 (504)
Q Consensus 247 ~~~~~~~~~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~ 326 (504)
+ ... ..+..++||+..+... +.- . .+++.|+|++|..... .+
T Consensus 166 -~-----~~~-~~~~~~~~p~~~~~~~-----------------------~~~-~-~~~~~iLv~~gg~~~~------~~ 207 (318)
T PF13528_consen 166 -P-----LPP-FFRVPFVGPIIRPEIR-----------------------ELP-P-EDEPKILVYFGGGGPG------DL 207 (318)
T ss_pred -c-----ccc-cccccccCchhccccc-----------------------ccC-C-CCCCEEEEEeCCCcHH------HH
Confidence 1 111 1226677877653111 000 1 1345899999977532 56
Q ss_pred HHHHHhCC-CCEEEEEcCCCCCCCCCCCchHHHHhhccCcEEEeec--chHhhhcCCCcceEEecCCchhHHHhhhcCCc
Q 010684 327 AMGLVNSN-HPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWC--PQEEVLKHPSIGGFLTHCGWNSIVESLCSGVP 403 (504)
Q Consensus 327 ~~a~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~v--pq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP 403 (504)
+++++..+ ..+++. +... .+..++|+.+.++. ...++|..+++ +|+|||.||++|++++|+|
T Consensus 208 ~~~l~~~~~~~~~v~-g~~~------------~~~~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P 272 (318)
T PF13528_consen 208 IEALKALPDYQFIVF-GPNA------------ADPRPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKP 272 (318)
T ss_pred HHHHHhCCCCeEEEE-cCCc------------ccccCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCC
Confidence 67777777 566655 4331 11126899999876 45679999999 9999999999999999999
Q ss_pred EEecCC--CCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHH
Q 010684 404 MICWPF--TGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREM 449 (504)
Q Consensus 404 ~v~~P~--~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~v 449 (504)
+|++|. ..+|..||+++ +++|+|..+.. ++++++.|+++|+++
T Consensus 273 ~l~ip~~~~~EQ~~~a~~l-~~~G~~~~~~~--~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 273 ALVIPRPGQDEQEYNARKL-EELGLGIVLSQ--EDLTPERLAEFLERL 317 (318)
T ss_pred EEEEeCCCCchHHHHHHHH-HHCCCeEEccc--ccCCHHHHHHHHhcC
Confidence 999999 77999999999 89999999987 899999999999764
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.91 E-value=1.8e-22 Score=197.30 Aligned_cols=326 Identities=19% Similarity=0.222 Sum_probs=202.3
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCC-eEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCCCCccc
Q 010684 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGF-HITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTAQD 89 (504)
Q Consensus 11 ~~il~~~~~~~GHi~p~l~LA~~L~~~Gh-~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 89 (504)
++|++...++-||+.|.++|+++|.++|+ +|.++.+....+.... +.. ++.++.++..-... ......
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~-------~~~-~~~~~~I~~~~~~~---~~~~~~ 69 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLV-------KQY-GIEFELIPSGGLRR---KGSLKL 69 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeec-------ccc-CceEEEEecccccc---cCcHHH
Confidence 47888888889999999999999999999 6888866554432221 112 67777776433222 111112
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc--hHHHHHHHcCCCeEEEccccHHHHHhHhhhhhh
Q 010684 90 AYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLP--FTITAAQQLGLPIVLFFTISACSFMGFKQFQTF 167 (504)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 167 (504)
+...+..+.. .....+++++. +||+||+-..++ .+..+|..+|||.+..
T Consensus 70 ~~~~~~~~~~---~~~a~~il~~~---------kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ih----------------- 120 (357)
T COG0707 70 LKAPFKLLKG---VLQARKILKKL---------KPDVVIGTGGYVSGPVGIAAKLLGIPVIIH----------------- 120 (357)
T ss_pred HHHHHHHHHH---HHHHHHHHHHc---------CCCEEEecCCccccHHHHHHHhCCCCEEEE-----------------
Confidence 2222332222 12444566655 999999966544 7889999999999984
Q ss_pred hhcCCCCccccccccchhhhhcccccccCCCCCCCCCCCCCcccccCCCchhHHHHHHHHhhhcccCcEEEEcChhhhhH
Q 010684 168 KEKGLFPVKVLADKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALEQ 247 (504)
Q Consensus 168 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~ 247 (504)
..+..++..+ +++. +....+..+++..+
T Consensus 121 ------------------------Eqn~~~G~an--------------------k~~~-------~~a~~V~~~f~~~~- 148 (357)
T COG0707 121 ------------------------EQNAVPGLAN--------------------KILS-------KFAKKVASAFPKLE- 148 (357)
T ss_pred ------------------------ecCCCcchhH--------------------HHhH-------Hhhceeeecccccc-
Confidence 2233333322 0000 00011122222100
Q ss_pred HHHHHHhhhCCCceeeeCccccccccchhccccccccCCCccccchhhhccccCCCCCeeEEEecCCccccC-HHHHHHH
Q 010684 248 QVLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMN-KQQLIEV 326 (504)
Q Consensus 248 ~~~~~~~~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~-~~~~~~~ 326 (504)
....+.++..+|-..... +.+.+..-.++... .++++|.|..||..... .+.+...
T Consensus 149 ------~~~~~~~~~~tG~Pvr~~----------------~~~~~~~~~~~~~~-~~~~~ilV~GGS~Ga~~ln~~v~~~ 205 (357)
T COG0707 149 ------AGVKPENVVVTGIPVRPE----------------FEELPAAEVRKDGR-LDKKTILVTGGSQGAKALNDLVPEA 205 (357)
T ss_pred ------ccCCCCceEEecCcccHH----------------hhccchhhhhhhcc-CCCcEEEEECCcchhHHHHHHHHHH
Confidence 011223477787544321 00000111111111 15779999999986333 3444445
Q ss_pred HHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHhhc-cC-cEEEeecchH-hhhcCCCcceEEecCCchhHHHhhhcCCc
Q 010684 327 AMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAK-EK-GFVASWCPQE-EVLKHPSIGGFLTHCGWNSIVESLCSGVP 403 (504)
Q Consensus 327 ~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~n-v~~~~~vpq~-~lL~~~~~~~~I~HGG~gs~~eal~~GvP 403 (504)
+..+.+ +..+++.++... + ........ .+ +.+..|.+.+ .+|+.+|+ +||++|++|+.|++++|+|
T Consensus 206 ~~~l~~-~~~v~~~~G~~~-------~-~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P 274 (357)
T COG0707 206 LAKLAN-RIQVIHQTGKND-------L-EELKSAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVP 274 (357)
T ss_pred HHHhhh-CeEEEEEcCcch-------H-HHHHHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCC
Confidence 444444 567888887552 1 11111111 23 7777888876 59999999 9999999999999999999
Q ss_pred EEecCC-C---CCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCchH-HHHHHHHHHH
Q 010684 404 MICWPF-T---GDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKG-KQMRNKAMEW 465 (504)
Q Consensus 404 ~v~~P~-~---~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~~~-~~~~~~a~~l 465 (504)
+|.+|. . .||..||+.+ ++.|.|..++. .++|++.+.+.|.+++++++. +.|+++++++
T Consensus 275 ~IliP~p~~~~~~Q~~NA~~l-~~~gaa~~i~~--~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~ 338 (357)
T COG0707 275 AILVPYPPGADGHQEYNAKFL-EKAGAALVIRQ--SELTPEKLAELILRLLSNPEKLKAMAENAKKL 338 (357)
T ss_pred EEEeCCCCCccchHHHHHHHH-HhCCCEEEecc--ccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999997 3 3999999999 78899999997 889999999999999998632 3444444443
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.88 E-value=4.1e-21 Score=188.80 Aligned_cols=127 Identities=17% Similarity=0.241 Sum_probs=94.0
Q ss_pred CeeEEEecCCccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHhhccCcEEEeecc--hHhhhcCCCc
Q 010684 305 KSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCP--QEEVLKHPSI 382 (504)
Q Consensus 305 ~~~V~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vp--q~~lL~~~~~ 382 (504)
++.|++.+|+... ..+++++++.+. +.++++... ... +.+++|+.+.+|.| ..++|+.+++
T Consensus 188 ~~~iLv~~g~~~~------~~l~~~l~~~~~-~~~i~~~~~------~~~----~~~~~~v~~~~~~~~~~~~~l~~ad~ 250 (321)
T TIGR00661 188 EDYILVYIGFEYR------YKILELLGKIAN-VKFVCYSYE------VAK----NSYNENVEIRRITTDNFKELIKNAEL 250 (321)
T ss_pred CCcEEEECCcCCH------HHHHHHHHhCCC-eEEEEeCCC------CCc----cccCCCEEEEECChHHHHHHHHhCCE
Confidence 4577777787532 345667776653 233332211 011 12357999999997 4468889998
Q ss_pred ceEEecCCchhHHHhhhcCCcEEecCCCC--CcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCchHHHHH
Q 010684 383 GGFLTHCGWNSIVESLCSGVPMICWPFTG--DQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMR 459 (504)
Q Consensus 383 ~~~I~HGG~gs~~eal~~GvP~v~~P~~~--DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~~~~~~~ 459 (504)
+|||||++|++|++++|+|++++|..+ ||..||+.+ ++.|+|+.++. .++ ++.+++.++++|+ .|+
T Consensus 251 --vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l-~~~g~~~~l~~--~~~---~~~~~~~~~~~~~---~~~ 318 (321)
T TIGR00661 251 --VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKL-EDLGCGIALEY--KEL---RLLEAILDIRNMK---RYK 318 (321)
T ss_pred --EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHH-HHCCCEEEcCh--hhH---HHHHHHHhccccc---ccc
Confidence 999999999999999999999999955 899999999 78899999986 444 6777887888887 554
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.82 E-value=6.7e-18 Score=168.99 Aligned_cols=341 Identities=17% Similarity=0.143 Sum_probs=197.3
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCCCC-CCCCCCCCCCccc
Q 010684 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDG-LPASSDESPTAQD 89 (504)
Q Consensus 11 ~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~-~~~~~~~~~~~~~ 89 (504)
|||+|+..+.-||....+.||+.|.++||+|++++....... .. ... .+++++.++.. +... .
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~-~~------~~~-~g~~~~~~~~~~~~~~--------~ 65 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEA-RL------VPK-AGIEFHFIPSGGLRRK--------G 65 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhh-hc------ccc-CCCcEEEEeccCcCCC--------C
Confidence 689999998889999999999999999999999987542110 00 000 16666666421 1111 1
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCC--cchHHHHHHHcCCCeEEEccccHHHHHhHhhhhhh
Q 010684 90 AYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGF--LPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTF 167 (504)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~--~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 167 (504)
....+...... ...+..+.+.+++. +||+|++... ...+..+++..++|++......
T Consensus 66 ~~~~l~~~~~~--~~~~~~~~~~ik~~------~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~------------- 124 (357)
T PRK00726 66 SLANLKAPFKL--LKGVLQARKILKRF------KPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNA------------- 124 (357)
T ss_pred hHHHHHHHHHH--HHHHHHHHHHHHhc------CCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCC-------------
Confidence 11111111111 12333444444444 8999999973 3345667888899998631100
Q ss_pred hhcCCCCccccccccchhhhhcccccccCCCCCCCCCCCCCcccccCCCchhHHHHHHHHhhhcccCcEEEEcChhhhhH
Q 010684 168 KEKGLFPVKVLADKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALEQ 247 (504)
Q Consensus 168 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~ 247 (504)
+++ ...++. ...++.+++.+...+
T Consensus 125 ----------------------------~~~--------------------~~~r~~------~~~~d~ii~~~~~~~-- 148 (357)
T PRK00726 125 ----------------------------VPG--------------------LANKLL------ARFAKKVATAFPGAF-- 148 (357)
T ss_pred ----------------------------Ccc--------------------HHHHHH------HHHhchheECchhhh--
Confidence 000 000000 012233333332111
Q ss_pred HHHHHHhhhCCCceeeeCccccccccchhccccccccCCCccccchhhhccccCCCCCeeEEEecCCccccCHHHHHHHH
Q 010684 248 QVLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVA 327 (504)
Q Consensus 248 ~~~~~~~~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~ 327 (504)
. . ..+.+++++|+........ ....-.+ +...++.++|++..|+.... .....+.
T Consensus 149 ---~--~-~~~~~i~vi~n~v~~~~~~----------------~~~~~~~-~~~~~~~~~i~~~gg~~~~~--~~~~~l~ 203 (357)
T PRK00726 149 ---P--E-FFKPKAVVTGNPVREEILA----------------LAAPPAR-LAGREGKPTLLVVGGSQGAR--VLNEAVP 203 (357)
T ss_pred ---h--c-cCCCCEEEECCCCChHhhc----------------ccchhhh-ccCCCCCeEEEEECCcHhHH--HHHHHHH
Confidence 0 1 2344588888765431110 0000001 12122445677666654311 1222333
Q ss_pred HHHHhCCC--CEEEEEcCCCCCCCCCCCchHHHHh--hccCcEEEeecc-hHhhhcCCCcceEEecCCchhHHHhhhcCC
Q 010684 328 MGLVNSNH--PFLWIIRPDLVTGETADLPAEFEVK--AKEKGFVASWCP-QEEVLKHPSIGGFLTHCGWNSIVESLCSGV 402 (504)
Q Consensus 328 ~a~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~--~~~nv~~~~~vp-q~~lL~~~~~~~~I~HGG~gs~~eal~~Gv 402 (504)
+++.++.. .++|.+|... . +.+.+. ..-++.+.+|+. ..++|+.+++ +|+|+|.++++||+++|+
T Consensus 204 ~a~~~~~~~~~~~~~~G~g~-------~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~ 273 (357)
T PRK00726 204 EALALLPEALQVIHQTGKGD-------L-EEVRAAYAAGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGL 273 (357)
T ss_pred HHHHHhhhCcEEEEEcCCCc-------H-HHHHHHhhcCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCC
Confidence 55555443 3455555431 1 222211 222478889984 5689999999 999999999999999999
Q ss_pred cEEecCC----CCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhCCCCC
Q 010684 403 PMICWPF----TGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGS 478 (504)
Q Consensus 403 P~v~~P~----~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~ 478 (504)
|+|++|. .++|..|+..+ .+.|.|..+.. ..++++.|+++|.++++|+ +++++..+-+.... +..+
T Consensus 274 Pvv~~~~~~~~~~~~~~~~~~i-~~~~~g~~~~~--~~~~~~~l~~~i~~ll~~~---~~~~~~~~~~~~~~----~~~~ 343 (357)
T PRK00726 274 PAILVPLPHAADDHQTANARAL-VDAGAALLIPQ--SDLTPEKLAEKLLELLSDP---ERLEAMAEAARALG----KPDA 343 (357)
T ss_pred CEEEecCCCCCcCcHHHHHHHH-HHCCCEEEEEc--ccCCHHHHHHHHHHHHcCH---HHHHHHHHHHHhcC----CcCH
Confidence 9999997 36899999999 67799999986 6678999999999999998 66655555444332 2334
Q ss_pred hHHHHHHHHHH
Q 010684 479 SSLNLDKLVNE 489 (504)
Q Consensus 479 ~~~~~~~~~~~ 489 (504)
..+.++.+++.
T Consensus 344 ~~~~~~~~~~~ 354 (357)
T PRK00726 344 AERLADLIEEL 354 (357)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.79 E-value=7.6e-17 Score=160.90 Aligned_cols=313 Identities=16% Similarity=0.138 Sum_probs=183.2
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCCCC-CCCCCCCCCCcccH
Q 010684 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDG-LPASSDESPTAQDA 90 (504)
Q Consensus 12 ~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~-~~~~~~~~~~~~~~ 90 (504)
+|++...+.-||....+.+|+.|.++||+|++++...... .. . . ...++++..++.. .... .....+
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~-~~-~-----~-~~~~~~~~~~~~~~~~~~----~~~~~~ 68 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLE-AR-L-----V-PKAGIPLHTIPVGGLRRK----GSLKKL 68 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcch-hh-c-----c-cccCCceEEEEecCcCCC----ChHHHH
Confidence 4788888888999999999999999999999998753211 00 0 0 0115666666521 1111 111111
Q ss_pred HHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCC--cchHHHHHHHcCCCeEEEccccHHHHHhHhhhhhhh
Q 010684 91 YSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGF--LPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTFK 168 (504)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~--~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 168 (504)
...+... .. ...+..+++ +. +||+|+++.. ...+..+|...|+|++......
T Consensus 69 ~~~~~~~-~~--~~~~~~~i~---~~------~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~-------------- 122 (350)
T cd03785 69 KAPFKLL-KG--VLQARKILK---KF------KPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNA-------------- 122 (350)
T ss_pred HHHHHHH-HH--HHHHHHHHH---hc------CCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCC--------------
Confidence 1222211 11 122334443 33 8999998763 3356778899999988631100
Q ss_pred hcCCCCccccccccchhhhhcccccccCCCCCCCCCCCCCcccccCCCchhHHHHHHHHhhhcccCcEEEEcChhhhhHH
Q 010684 169 EKGLFPVKVLADKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALEQQ 248 (504)
Q Consensus 169 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~ 248 (504)
+++. ..++ ....++.+++.+....+.
T Consensus 123 ---------------------------~~~~--------------------~~~~------~~~~~~~vi~~s~~~~~~- 148 (350)
T cd03785 123 ---------------------------VPGL--------------------ANRL------LARFADRVALSFPETAKY- 148 (350)
T ss_pred ---------------------------CccH--------------------HHHH------HHHhhCEEEEcchhhhhc-
Confidence 0000 0000 112245555554322211
Q ss_pred HHHHHhhhCCCceeeeCccccccccchhccccccccCCCccccchhhhccccCCCCCeeEEEecCCccccCH-HHHHHHH
Q 010684 249 VLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNK-QQLIEVA 327 (504)
Q Consensus 249 ~~~~~~~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~-~~~~~~~ 327 (504)
..+.++.++|......... ..+. .+.+...+++.+|.+..|+...... +.+...+
T Consensus 149 -------~~~~~~~~i~n~v~~~~~~----------------~~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~ 204 (350)
T cd03785 149 -------FPKDKAVVTGNPVREEILA----------------LDRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEAL 204 (350)
T ss_pred -------CCCCcEEEECCCCchHHhh----------------hhhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHH
Confidence 2234577888654321100 0001 1122222244566666666542221 2222333
Q ss_pred HHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHh---hccCcEEEeec-chHhhhcCCCcceEEecCCchhHHHhhhcCCc
Q 010684 328 MGLVNSNHPFLWIIRPDLVTGETADLPAEFEVK---AKEKGFVASWC-PQEEVLKHPSIGGFLTHCGWNSIVESLCSGVP 403 (504)
Q Consensus 328 ~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~nv~~~~~v-pq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP 403 (504)
..+...+..+++..+... .+.+.+. ..+|+.+.+|+ +..++|..+++ +|+++|.+|+.||+++|+|
T Consensus 205 ~~l~~~~~~~~~i~G~g~--------~~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~P 274 (350)
T cd03785 205 AELLRKRLQVIHQTGKGD--------LEEVKKAYEELGVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLP 274 (350)
T ss_pred HHhhccCeEEEEEcCCcc--------HHHHHHHHhccCCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCC
Confidence 334322334555655431 1222222 23689999998 45679999999 9999999999999999999
Q ss_pred EEecCC----CCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCc
Q 010684 404 MICWPF----TGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE 453 (504)
Q Consensus 404 ~v~~P~----~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~ 453 (504)
+|++|. ..+|..|+..+ .+.|.|..+.. ...+++++.++|.++++++
T Consensus 275 vv~~~~~~~~~~~~~~~~~~l-~~~g~g~~v~~--~~~~~~~l~~~i~~ll~~~ 325 (350)
T cd03785 275 AILIPLPYAADDHQTANARAL-VKAGAAVLIPQ--EELTPERLAAALLELLSDP 325 (350)
T ss_pred EEEeecCCCCCCcHHHhHHHH-HhCCCEEEEec--CCCCHHHHHHHHHHHhcCH
Confidence 999986 35788899999 56799999985 4578999999999999887
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.71 E-value=1e-14 Score=145.50 Aligned_cols=77 Identities=17% Similarity=0.415 Sum_probs=67.4
Q ss_pred chHhhhcCCCcceEEecCCchhHHHhhhcCCcEEecCCC---CCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHH
Q 010684 372 PQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFT---GDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVRE 448 (504)
Q Consensus 372 pq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~---~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~ 448 (504)
+-.++|+.+|+ +|+++|.+++.||+++|+|+|++|.. .+|..|+..+ ...|.|..+.. ...++++|+++|.+
T Consensus 243 ~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i-~~~~~G~~~~~--~~~~~~~l~~~i~~ 317 (348)
T TIGR01133 243 NMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFL-EDLGAGLVIRQ--KELLPEKLLEALLK 317 (348)
T ss_pred CHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHH-HHCCCEEEEec--ccCCHHHHHHHHHH
Confidence 45679999999 99999988999999999999999873 4678888888 67799998875 66789999999999
Q ss_pred HhcCc
Q 010684 449 MMEGE 453 (504)
Q Consensus 449 vl~~~ 453 (504)
+++|+
T Consensus 318 ll~~~ 322 (348)
T TIGR01133 318 LLLDP 322 (348)
T ss_pred HHcCH
Confidence 99988
No 35
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.69 E-value=4.3e-15 Score=149.32 Aligned_cols=347 Identities=9% Similarity=-0.034 Sum_probs=194.0
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCCCCcccH
Q 010684 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTAQDA 90 (504)
Q Consensus 11 ~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 90 (504)
.||+|...++-||++|. +|+++|+++|++|+|++.... .+++.+.+. .+++..++ . ..+
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~g~~~------~~~~~~l~----v--------~G~ 64 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAEGCEV------LYSMEELS----V--------MGL 64 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhCcCcc------ccChHHhh----h--------ccH
Confidence 48899999999999999 999999999999999985422 344431100 12222221 1 111
Q ss_pred HHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCC-cch--HHHHHHHcCCCeEEEccccHHHHHhHhhhhhh
Q 010684 91 YSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGF-LPF--TITAAQQLGLPIVLFFTISACSFMGFKQFQTF 167 (504)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~-~~~--~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 167 (504)
...+..+.. . ...+..+.+.+++. +||+||.-.. .+. ....|+.+|||++.+. .|-.
T Consensus 65 ~~~l~~~~~-~-~~~~~~~~~~l~~~------kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i-~P~~----------- 124 (385)
T TIGR00215 65 REVLGRLGR-L-LKIRKEVVQLAKQA------KPDLLVGIDAPDFNLTKELKKKDPGIKIIYYI-SPQV----------- 124 (385)
T ss_pred HHHHHHHHH-H-HHHHHHHHHHHHhc------CCCEEEEeCCCCccHHHHHHHhhCCCCEEEEe-CCcH-----------
Confidence 122222211 1 23334444555555 9999996443 323 3338899999998753 1100
Q ss_pred hhcCCCCccccccccchhhhhcccccccCCCCCCCCCCCCCcccccCCCchhHHHHHHHHhhhcccCcEEEEcChhhhhH
Q 010684 168 KEKGLFPVKVLADKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALEQ 247 (504)
Q Consensus 168 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~ 247 (504)
+.|++. +. +.+. +.++.+++.... +.
T Consensus 125 --------------------------waw~~~----------------~~----r~l~------~~~d~v~~~~~~--e~ 150 (385)
T TIGR00215 125 --------------------------WAWRKW----------------RA----KKIE------KATDFLLAILPF--EK 150 (385)
T ss_pred --------------------------hhcCcc----------------hH----HHHH------HHHhHhhccCCC--cH
Confidence 001110 00 1111 122222332221 22
Q ss_pred HHHHHHhhhCCCceeeeCccccccccchhccccccccCCCccccchhhhccccCCCCCeeEEEecCCccccCHHHHHHHH
Q 010684 248 QVLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVA 327 (504)
Q Consensus 248 ~~~~~~~~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~ 327 (504)
.++ +. ...+..+||....+.-... .....+..+-+.-.+++++|.+..||....-......++
T Consensus 151 ~~~---~~-~g~~~~~vGnPv~~~~~~~-------------~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll 213 (385)
T TIGR00215 151 AFY---QK-KNVPCRFVGHPLLDAIPLY-------------KPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFL 213 (385)
T ss_pred HHH---Hh-cCCCEEEECCchhhhcccc-------------CCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHH
Confidence 211 11 1123677885443210000 001111222222233556888888887542233445555
Q ss_pred HHHHhC-----CCCEEEEEcCCCCCCCCCCCchHHH---Hhh--ccCcEEEeecchHhhhcCCCcceEEecCCchhHHHh
Q 010684 328 MGLVNS-----NHPFLWIIRPDLVTGETADLPAEFE---VKA--KEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVES 397 (504)
Q Consensus 328 ~a~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~---~~~--~~nv~~~~~vpq~~lL~~~~~~~~I~HGG~gs~~ea 397 (504)
+++..+ +.++++...... ....+. ... ...+.+..+ +..++|..+|+ +|+-+|..|+ |+
T Consensus 214 ~a~~~l~~~~p~~~~vi~~~~~~-------~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~aADl--~V~~SGt~tl-Ea 282 (385)
T TIGR00215 214 KAAQLLEQQEPDLRRVLPVVNFK-------RRLQFEQIKAEYGPDLQLHLIDG-DARKAMFAADA--ALLASGTAAL-EA 282 (385)
T ss_pred HHHHHHHHhCCCeEEEEEeCCch-------hHHHHHHHHHHhCCCCcEEEECc-hHHHHHHhCCE--EeecCCHHHH-HH
Confidence 555432 234544443221 011111 111 123333322 33468999999 9999999888 99
Q ss_pred hhcCCcEEec----CCCC---------CcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCc----hH-HHHH
Q 010684 398 LCSGVPMICW----PFTG---------DQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE----KG-KQMR 459 (504)
Q Consensus 398 l~~GvP~v~~----P~~~---------DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~----~~-~~~~ 459 (504)
+.+|+|+|++ |+.. +|..|+..+ ...++...+.. .+.|++.|.+++.++|+|+ +. +.++
T Consensus 283 ~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil-~~~~~~pel~q--~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~ 359 (385)
T TIGR00215 283 ALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNIL-ANRLLVPELLQ--EECTPHPLAIALLLLLENGLKAYKEMHRER 359 (385)
T ss_pred HHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHh-cCCccchhhcC--CCCCHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 9999999999 8632 388899999 66699888875 7899999999999999987 54 6677
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 010684 460 NKAMEWKGLAEEAAAPHGSSSLNLDKLV 487 (504)
Q Consensus 460 ~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 487 (504)
+..+++.+.+. ++|.+.++.+.++
T Consensus 360 ~~~~~~~~~l~----~~~~~~~~a~~i~ 383 (385)
T TIGR00215 360 QFFEELRQRIY----CNADSERAAQAVL 383 (385)
T ss_pred HHHHHHHHHhc----CCCHHHHHHHHHh
Confidence 77777766663 4666666555443
No 36
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.66 E-value=4.3e-14 Score=142.68 Aligned_cols=133 Identities=18% Similarity=0.288 Sum_probs=96.3
Q ss_pred CCeeEEEecCCccccCHHHHHHHHHHHHhC-CCCEEEEEcCCCCCCCCCCCchHHH---HhhccCcEEEeecchH-hhhc
Q 010684 304 PKSVIYVNFGSFIFMNKQQLIEVAMGLVNS-NHPFLWIIRPDLVTGETADLPAEFE---VKAKEKGFVASWCPQE-EVLK 378 (504)
Q Consensus 304 ~~~~V~vs~GS~~~~~~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~nv~~~~~vpq~-~lL~ 378 (504)
++++|++..|+.... +.+..+++++... +.+++++.+.+. .+-+.+. +..++|+.+.+|+++. +++.
T Consensus 201 ~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~------~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~ 272 (380)
T PRK13609 201 NKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNE------ALKQSLEDLQETNPDALKVFGYVENIDELFR 272 (380)
T ss_pred CCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCH------HHHHHHHHHHhcCCCcEEEEechhhHHHHHH
Confidence 456788877877532 2245566666544 356666665331 0111221 2234689999999875 7999
Q ss_pred CCCcceEEecCCchhHHHhhhcCCcEEec-CCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCc
Q 010684 379 HPSIGGFLTHCGWNSIVESLCSGVPMICW-PFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE 453 (504)
Q Consensus 379 ~~~~~~~I~HGG~gs~~eal~~GvP~v~~-P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~ 453 (504)
.+|+ +|+.+|..|+.||+++|+|+|+. |..+.|..|+..+ ++.|+|+... +.+++.++|.++++|+
T Consensus 273 ~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~-~~~G~~~~~~------~~~~l~~~i~~ll~~~ 339 (380)
T PRK13609 273 VTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYF-ERKGAAVVIR------DDEEVFAKTEALLQDD 339 (380)
T ss_pred hccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHH-HhCCcEEEEC------CHHHHHHHHHHHHCCH
Confidence 9998 99999988999999999999985 6777778899888 6778887643 4699999999999988
No 37
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.65 E-value=3.8e-14 Score=135.89 Aligned_cols=103 Identities=16% Similarity=0.172 Sum_probs=77.0
Q ss_pred eeEEEecCCccccCHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCCCCCCchHHHHh--hccCcEEEeecchH-hhhcCC
Q 010684 306 SVIYVNFGSFIFMNKQQLIEVAMGLVNS--NHPFLWIIRPDLVTGETADLPAEFEVK--AKEKGFVASWCPQE-EVLKHP 380 (504)
Q Consensus 306 ~~V~vs~GS~~~~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~nv~~~~~vpq~-~lL~~~ 380 (504)
+.|+|+||...... ....+++++... +.++.+++|... ...+.+.+. ..+|+.+..+++++ ++|..+
T Consensus 171 ~~iLi~~GG~d~~~--~~~~~l~~l~~~~~~~~i~vv~G~~~------~~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~a 242 (279)
T TIGR03590 171 RRVLVSFGGADPDN--LTLKLLSALAESQINISITLVTGSSN------PNLDELKKFAKEYPNIILFIDVENMAELMNEA 242 (279)
T ss_pred CeEEEEeCCcCCcC--HHHHHHHHHhccccCceEEEEECCCC------cCHHHHHHHHHhCCCEEEEeCHHHHHHHHHHC
Confidence 57899998654222 445566666654 356777777552 111222221 24589999999987 799999
Q ss_pred CcceEEecCCchhHHHhhhcCCcEEecCCCCCcchhhhh
Q 010684 381 SIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRY 419 (504)
Q Consensus 381 ~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~r 419 (504)
|+ +|++|| +|++|+++.|+|+|++|...+|..||+.
T Consensus 243 Dl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 243 DL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred CE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 99 999999 9999999999999999999999999875
No 38
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.59 E-value=5e-13 Score=134.98 Aligned_cols=151 Identities=11% Similarity=0.000 Sum_probs=85.7
Q ss_pred CCeeEEEecCCccccCHHHHHHHHHHHHhC-----CCCEEEEEcCCCCCCCCCCCchHHHHhhc----cCcEEEeecchH
Q 010684 304 PKSVIYVNFGSFIFMNKQQLIEVAMGLVNS-----NHPFLWIIRPDLVTGETADLPAEFEVKAK----EKGFVASWCPQE 374 (504)
Q Consensus 304 ~~~~V~vs~GS~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~----~nv~~~~~vpq~ 374 (504)
++++|.+..||...........++++++.+ +.+++|+.+... ..+.+.+... -++.+.. -.-.
T Consensus 185 ~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~-------~~~~~~~~~~~~~~~~v~~~~-~~~~ 256 (380)
T PRK00025 185 DARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPK-------RREQIEEALAEYAGLEVTLLD-GQKR 256 (380)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCChh-------hHHHHHHHHhhcCCCCeEEEc-ccHH
Confidence 345667777765432222244455554332 235666654221 1122222221 1233322 1234
Q ss_pred hhhcCCCcceEEecCCchhHHHhhhcCCcEEecCCCC--------Ccchh-----hhhhhhhcceeEEecCCCCCccHHH
Q 010684 375 EVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTG--------DQPTN-----GRYVCNEWGVGMEINGDDEDVIRNE 441 (504)
Q Consensus 375 ~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~--------DQ~~n-----a~rv~~~~G~G~~l~~~~~~~~~~~ 441 (504)
.++..+|+ +|+.+|.+++ |++.+|+|+|+.|... +|..| +..+ ...+++..+.. ...++++
T Consensus 257 ~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~--~~~~~~~ 330 (380)
T PRK00025 257 EAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLL-AGRELVPELLQ--EEATPEK 330 (380)
T ss_pred HHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHh-cCCCcchhhcC--CCCCHHH
Confidence 68999999 9999998887 9999999999995431 22222 2333 33344444543 5788999
Q ss_pred HHHHHHHHhcCchH-HHHHHHHHHHHHH
Q 010684 442 VEKLVREMMEGEKG-KQMRNKAMEWKGL 468 (504)
Q Consensus 442 l~~ai~~vl~~~~~-~~~~~~a~~l~~~ 468 (504)
|+++|.++++|++. ++|+++++++.+.
T Consensus 331 l~~~i~~ll~~~~~~~~~~~~~~~~~~~ 358 (380)
T PRK00025 331 LARALLPLLADGARRQALLEGFTELHQQ 358 (380)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 99999999999843 3344444444443
No 39
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.58 E-value=8.3e-13 Score=123.43 Aligned_cols=340 Identities=14% Similarity=0.145 Sum_probs=198.9
Q ss_pred CCCCcEEEEEcCCCc--ccHHHHHHHHHHHHhC--CCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCC-
Q 010684 7 ACSKVHAVCIPSPFQ--SHIKAMLKLAKLLHHK--GFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASS- 81 (504)
Q Consensus 7 ~~~~~~il~~~~~~~--GHi~p~l~LA~~L~~~--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~- 81 (504)
+++.++|+|++.-.. ||+-.+..||.+|++. |.+|+++++..-...+.. -.++++..+|.--....
T Consensus 6 ~~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~---------~~gVd~V~LPsl~k~~~G 76 (400)
T COG4671 6 ASKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPG---------PAGVDFVKLPSLIKGDNG 76 (400)
T ss_pred hhccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCC---------cccCceEecCceEecCCC
Confidence 455669999998755 9999999999999998 999999997654332221 12899999983211110
Q ss_pred --CCCCCcccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEccccHHHHH
Q 010684 82 --DESPTAQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFM 159 (504)
Q Consensus 82 --~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~ 159 (504)
...+...+...+.+ ++ ...+...++.. +||++|+|.+-+. + .-|. .|..
T Consensus 77 ~~~~~d~~~~l~e~~~-~R----s~lil~t~~~f---------kPDi~IVd~~P~G-l-r~EL--~ptL----------- 127 (400)
T COG4671 77 EYGLVDLDGDLEETKK-LR----SQLILSTAETF---------KPDIFIVDKFPFG-L-RFEL--LPTL----------- 127 (400)
T ss_pred ceeeeecCCCHHHHHH-HH----HHHHHHHHHhc---------CCCEEEEeccccc-h-hhhh--hHHH-----------
Confidence 01222333333333 22 22333333443 9999999975432 0 0000 0000
Q ss_pred hHhhhhhhhhcCCCCccccccccchhhhhcccccccCCCCCCCCCCCCCcccccCCCchhHHHHHHHHhhhcccCcEEEE
Q 010684 160 GFKQFQTFKEKGLFPVKVLADKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIII 239 (504)
Q Consensus 160 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 239 (504)
.+.. ..+..+.- ++ ..+.+.+........++.....+ ....+.+++
T Consensus 128 ~yl~-----~~~t~~vL---------------------~l--r~i~D~p~~~~~~w~~~~~~~~I------~r~yD~V~v 173 (400)
T COG4671 128 EYLK-----TTGTRLVL---------------------GL--RSIRDIPQELEADWRRAETVRLI------NRFYDLVLV 173 (400)
T ss_pred HHHh-----hcCCccee---------------------eh--HhhhhchhhhccchhhhHHHHHH------HHhheEEEE
Confidence 0000 00000000 00 00111111111111111111111 133467777
Q ss_pred cChhhhhHHHHHHH-hhhCCCceeeeCccccccccchhccccccccCCCccccchhhhccccCCCCCeeEEEecCCcccc
Q 010684 240 HTFDALEQQVLNAL-SFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFM 318 (504)
Q Consensus 240 ~s~~~le~~~~~~~-~~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~ 318 (504)
...+.|.-+...+. .+..-.++.++|.+....+..+. .+... +.+.-|.||-|.- ..
T Consensus 174 ~GdP~f~d~~~~~~~~~~i~~k~~ytG~vq~~~~~~~~--------------------p~~~~-pE~~~Ilvs~GGG-~d 231 (400)
T COG4671 174 YGDPDFYDPLTEFPFAPAIRAKMRYTGFVQRSLPHLPL--------------------PPHEA-PEGFDILVSVGGG-AD 231 (400)
T ss_pred ecCccccChhhcCCccHhhhhheeEeEEeeccCcCCCC--------------------CCcCC-CccceEEEecCCC-hh
Confidence 77766654432221 12223459999998332111000 01111 2334777877744 35
Q ss_pred CHHHHHHHHHHHHh-CCCC--EEEEEcCCCCCCCCCCCchHHH----Hhhc--cCcEEEeecchH-hhhcCCCcceEEec
Q 010684 319 NKQQLIEVAMGLVN-SNHP--FLWIIRPDLVTGETADLPAEFE----VKAK--EKGFVASWCPQE-EVLKHPSIGGFLTH 388 (504)
Q Consensus 319 ~~~~~~~~~~a~~~-~~~~--~i~~~~~~~~~~~~~~~~~~~~----~~~~--~nv~~~~~vpq~-~lL~~~~~~~~I~H 388 (504)
..+++...+.|... .+.+ .+.++|.. +|..-. ...+ +++.+..|-.+. .++..++. +|+-
T Consensus 232 G~eLi~~~l~A~~~l~~l~~~~~ivtGP~--------MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm 301 (400)
T COG4671 232 GAELIETALAAAQLLAGLNHKWLIVTGPF--------MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSM 301 (400)
T ss_pred hHHHHHHHHHHhhhCCCCCcceEEEeCCC--------CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeec
Confidence 66777777777655 3433 34444433 454322 2334 789999987755 69988888 9999
Q ss_pred CCchhHHHhhhcCCcEEecCCCC---CcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCc
Q 010684 389 CGWNSIVESLCSGVPMICWPFTG---DQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE 453 (504)
Q Consensus 389 GG~gs~~eal~~GvP~v~~P~~~---DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~ 453 (504)
||.||++|-|++|+|-+++|... +|-.=|.|+ +++|+.=.+.. +.++++.++++|...+.-|
T Consensus 302 ~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl-~~LGL~dvL~p--e~lt~~~La~al~~~l~~P 366 (400)
T COG4671 302 GGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRL-EELGLVDVLLP--ENLTPQNLADALKAALARP 366 (400)
T ss_pred ccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHH-HhcCcceeeCc--ccCChHHHHHHHHhcccCC
Confidence 99999999999999999999853 888999999 89999989987 8999999999999998744
No 40
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.55 E-value=4.6e-12 Score=128.02 Aligned_cols=144 Identities=22% Similarity=0.329 Sum_probs=99.6
Q ss_pred CCeeEEEecCCccccCHHHHHHHHHHH-HhC-CCCEEEEEcCCCCCCCCCCCchHHHHh--hccCcEEEeecchH-hhhc
Q 010684 304 PKSVIYVNFGSFIFMNKQQLIEVAMGL-VNS-NHPFLWIIRPDLVTGETADLPAEFEVK--AKEKGFVASWCPQE-EVLK 378 (504)
Q Consensus 304 ~~~~V~vs~GS~~~~~~~~~~~~~~a~-~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~nv~~~~~vpq~-~lL~ 378 (504)
++++|.++.|+... .+.+..+++++ +.. +.+++++.|.+. .+-+.+.+. ..+++.+.+|+++. +++.
T Consensus 201 ~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~------~l~~~l~~~~~~~~~v~~~G~~~~~~~~~~ 272 (391)
T PRK13608 201 DKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSK------ELKRSLTAKFKSNENVLILGYTKHMNEWMA 272 (391)
T ss_pred CCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCH------HHHHHHHHHhccCCCeEEEeccchHHHHHH
Confidence 45688888888752 12344444443 222 356666665331 011122221 23588899999765 6999
Q ss_pred CCCcceEEecCCchhHHHhhhcCCcEEec-CCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCchH-H
Q 010684 379 HPSIGGFLTHCGWNSIVESLCSGVPMICW-PFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKG-K 456 (504)
Q Consensus 379 ~~~~~~~I~HGG~gs~~eal~~GvP~v~~-P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~~~-~ 456 (504)
.+|+ +|+..|..|+.||+++|+|+|+. |..++|..|+..+ ++.|+|+... +.+++.++|.++++|++. +
T Consensus 273 ~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~-~~~G~g~~~~------~~~~l~~~i~~ll~~~~~~~ 343 (391)
T PRK13608 273 SSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYF-EEKGFGKIAD------TPEEAIKIVASLTNGNEQLT 343 (391)
T ss_pred hhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHH-HhCCcEEEeC------CHHHHHHHHHHHhcCHHHHH
Confidence 9999 99998888999999999999998 7766677899999 7889997654 578999999999998732 3
Q ss_pred HHHHHHHH
Q 010684 457 QMRNKAME 464 (504)
Q Consensus 457 ~~~~~a~~ 464 (504)
.|++++++
T Consensus 344 ~m~~~~~~ 351 (391)
T PRK13608 344 NMISTMEQ 351 (391)
T ss_pred HHHHHHHH
Confidence 34444443
No 41
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.50 E-value=1.2e-15 Score=135.10 Aligned_cols=137 Identities=17% Similarity=0.251 Sum_probs=97.2
Q ss_pred eEEEecCCccccC-HHHHHHHHHHHHh--CCCCEEEEEcCCCCCCCCCCCchHHHHhhccCcEEEeecc-hHhhhcCCCc
Q 010684 307 VIYVNFGSFIFMN-KQQLIEVAMGLVN--SNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCP-QEEVLKHPSI 382 (504)
Q Consensus 307 ~V~vs~GS~~~~~-~~~~~~~~~a~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vp-q~~lL~~~~~ 382 (504)
+|+|+.||..... .+.+..+...+.. ...++++++|......... .+ .....++.+.+|++ ..+++..+|+
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~~~~~----~~-~~~~~~v~~~~~~~~m~~~m~~aDl 75 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNYEELKI----KV-ENFNPNVKVFGFVDNMAELMAAADL 75 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCECHHHCC----CH-CCTTCCCEEECSSSSHHHHHHHHSE
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcHHHHHH----HH-hccCCcEEEEechhhHHHHHHHcCE
Confidence 5899999875321 1122223333322 2468888888652211000 00 11126899999999 6679999999
Q ss_pred ceEEecCCchhHHHhhhcCCcEEecCCCC----CcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCc
Q 010684 383 GGFLTHCGWNSIVESLCSGVPMICWPFTG----DQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE 453 (504)
Q Consensus 383 ~~~I~HGG~gs~~eal~~GvP~v~~P~~~----DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~ 453 (504)
+|||||.||++|++++|+|+|++|... +|..||..+ ++.|+|..+.. ...+.+.|.++|.++++++
T Consensus 76 --vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~-~~~g~~~~~~~--~~~~~~~L~~~i~~l~~~~ 145 (167)
T PF04101_consen 76 --VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKEL-AKKGAAIMLDE--SELNPEELAEAIEELLSDP 145 (167)
T ss_dssp --EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHH-HHCCCCCCSEC--CC-SCCCHHHHHHCHCCCH
T ss_pred --EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHH-HHcCCccccCc--ccCCHHHHHHHHHHHHcCc
Confidence 999999999999999999999999988 999999999 78899999996 7778999999999999987
No 42
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.43 E-value=1.4e-10 Score=117.05 Aligned_cols=136 Identities=19% Similarity=0.179 Sum_probs=92.0
Q ss_pred CCCeeEEEecCCccccCHH-HHHHHHHHHH-----hCCCCEEEEEcCCCCCCCCCCCchHHHHh-hccCcEEEeecchH-
Q 010684 303 EPKSVIYVNFGSFIFMNKQ-QLIEVAMGLV-----NSNHPFLWIIRPDLVTGETADLPAEFEVK-AKEKGFVASWCPQE- 374 (504)
Q Consensus 303 ~~~~~V~vs~GS~~~~~~~-~~~~~~~a~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~nv~~~~~vpq~- 374 (504)
+++++|.+..|+....... .+..+...+. ..+.++++..|.+. .+-..+.+. ...++.+.+|+++.
T Consensus 204 ~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~------~~~~~L~~~~~~~~v~~~G~~~~~~ 277 (382)
T PLN02605 204 EDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRNK------KLQSKLESRDWKIPVKVRGFVTNME 277 (382)
T ss_pred CCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCCH------HHHHHHHhhcccCCeEEEeccccHH
Confidence 3556777776665433322 2233322220 12345666666431 011111111 13578889999865
Q ss_pred hhhcCCCcceEEecCCchhHHHhhhcCCcEEecCCCCCcc-hhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcC-
Q 010684 375 EVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQP-TNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEG- 452 (504)
Q Consensus 375 ~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~-~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~- 452 (504)
++|..+|+ +|+.+|.+|+.||+++|+|+|+.+....|. .|+..+ .+.|.|+.+. ++++|.++|.++++|
T Consensus 278 ~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i-~~~g~g~~~~------~~~~la~~i~~ll~~~ 348 (382)
T PLN02605 278 EWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYV-VDNGFGAFSE------SPKEIARIVAEWFGDK 348 (382)
T ss_pred HHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHH-HhCCceeecC------CHHHHHHHHHHHHcCC
Confidence 59999999 999999999999999999999999777776 688888 5679987543 689999999999987
Q ss_pred c
Q 010684 453 E 453 (504)
Q Consensus 453 ~ 453 (504)
+
T Consensus 349 ~ 349 (382)
T PLN02605 349 S 349 (382)
T ss_pred H
Confidence 6
No 43
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.42 E-value=5.6e-14 Score=120.48 Aligned_cols=129 Identities=22% Similarity=0.255 Sum_probs=82.9
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCCCC--CCCCCCCCCCcccH
Q 010684 13 AVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDG--LPASSDESPTAQDA 90 (504)
Q Consensus 13 il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~--~~~~~~~~~~~~~~ 90 (504)
|+|++.|+.||++|+++||++|++|||+|++++++.+.+.+++. |++|..++.. ++.. ......+
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~----------Gl~~~~~~~~~~~~~~---~~~~~~~ 67 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAA----------GLEFVPIPGDSRLPRS---LEPLANL 67 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHT----------T-EEEESSSCGGGGHH---HHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceeccccc----------CceEEEecCCcCcCcc---cchhhhh
Confidence 78999999999999999999999999999999999999999877 9999999855 1110 0000111
Q ss_pred HHHHHHHHHhhcchHHHHHHHHhhcCC---CCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEccccHHH
Q 010684 91 YSLGENIINNVLLHPFLDLLAKLNDSS---NSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISACS 157 (504)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~ll~~l~~~~---~~~~~~~DlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~ 157 (504)
....... .. ...+.+.++...... .......|+++++.....+..+||++|||++.....+...
T Consensus 68 ~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~~ 134 (139)
T PF03033_consen 68 RRLARLI-RG--LEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWFA 134 (139)
T ss_dssp HCHHHHH-HH--HHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGGS
T ss_pred hhHHHHh-hh--hhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcCc
Confidence 1111110 00 111122222211000 0011256888888888899999999999999988777543
No 44
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.41 E-value=2.9e-10 Score=114.55 Aligned_cols=134 Identities=18% Similarity=0.128 Sum_probs=90.0
Q ss_pred CCeeEEEecCCccccCHHHHHHHHHHHHhC----CCCEEEEEcCCCCCCCCCCCchHHHHhhc-----------------
Q 010684 304 PKSVIYVNFGSFIFMNKQQLIEVAMGLVNS----NHPFLWIIRPDLVTGETADLPAEFEVKAK----------------- 362 (504)
Q Consensus 304 ~~~~V~vs~GS~~~~~~~~~~~~~~a~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~----------------- 362 (504)
++++|.+-.||........+..++++++.+ +..|++.+.+... . ..+.+.+.
T Consensus 204 ~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~------~-~~~~~~l~~~g~~~~~~~~~~~~~~ 276 (396)
T TIGR03492 204 GRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLS------L-EKLQAILEDLGWQLEGSSEDQTSLF 276 (396)
T ss_pred CCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCC------H-HHHHHHHHhcCceecCCccccchhh
Confidence 346888888987533333344555555543 5678888743310 0 11111111
Q ss_pred --cCcEEEeecch-HhhhcCCCcceEEecCCchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhc----ceeEEecCCCC
Q 010684 363 --EKGFVASWCPQ-EEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEW----GVGMEINGDDE 435 (504)
Q Consensus 363 --~nv~~~~~vpq-~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~----G~G~~l~~~~~ 435 (504)
.++.+..+..+ .+++..+++ +|+-+|..| .|+...|+|+|++|....|. |+... ++. |.++.+.
T Consensus 277 ~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~-~~~~~l~g~~~~l~---- 347 (396)
T TIGR03492 277 QKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFA-EAQSRLLGGSVFLA---- 347 (396)
T ss_pred ccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHH-HhhHhhcCCEEecC----
Confidence 12455555443 469999999 999999776 99999999999999877786 88766 443 6666665
Q ss_pred CccHHHHHHHHHHHhcCc
Q 010684 436 DVIRNEVEKLVREMMEGE 453 (504)
Q Consensus 436 ~~~~~~l~~ai~~vl~~~ 453 (504)
..+.+.|.+++.++++|+
T Consensus 348 ~~~~~~l~~~l~~ll~d~ 365 (396)
T TIGR03492 348 SKNPEQAAQVVRQLLADP 365 (396)
T ss_pred CCCHHHHHHHHHHHHcCH
Confidence 345599999999999988
No 45
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.34 E-value=2.2e-09 Score=106.96 Aligned_cols=129 Identities=12% Similarity=0.146 Sum_probs=84.9
Q ss_pred eeEEEecCCcc-ccCHHHHHHHHHHHHhC-CCCEEEEEcCCCCCCCCCCCchHHHHhhccCcEEEeecchHh---hhcCC
Q 010684 306 SVIYVNFGSFI-FMNKQQLIEVAMGLVNS-NHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEE---VLKHP 380 (504)
Q Consensus 306 ~~V~vs~GS~~-~~~~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~---lL~~~ 380 (504)
+.+++..|+.. ....+.+..++..+... +..+++.-.+.. ...+ ....+|+.+.+|+++.+ ++..+
T Consensus 197 ~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~G~~~~--------~~~~-~~~~~~v~~~g~~~~~~~~~~~~~~ 267 (364)
T cd03814 197 RPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIVGDGPA--------RARL-EARYPNVHFLGFLDGEELAAAYASA 267 (364)
T ss_pred CeEEEEEeccccccCHHHHHHHHHHhhhcCCceEEEEeCCch--------HHHH-hccCCcEEEEeccCHHHHHHHHHhC
Confidence 45666777764 22334444444444332 334444433221 1111 13457999999998765 88899
Q ss_pred CcceEEecCC----chhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCch
Q 010684 381 SIGGFLTHCG----WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEK 454 (504)
Q Consensus 381 ~~~~~I~HGG----~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~~ 454 (504)
++ +|+.+. .+++.||+++|+|+|+.+..+ +...+ +..+.|..... -+.++++++|.++++|++
T Consensus 268 d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i-~~~~~g~~~~~----~~~~~l~~~i~~l~~~~~ 334 (364)
T cd03814 268 DV--FVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIV-TDGENGLLVEP----GDAEAFAAALAALLADPE 334 (364)
T ss_pred CE--EEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhh-cCCcceEEcCC----CCHHHHHHHHHHHHcCHH
Confidence 98 887654 478999999999999987653 44555 56688877763 467889999999999883
No 46
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.27 E-value=1.2e-08 Score=105.68 Aligned_cols=140 Identities=12% Similarity=0.083 Sum_probs=88.8
Q ss_pred eEEEecCCccccCHHHHHHHHHHHHhCC-CCEEEEEcCCCCCCCCCCCchHHHHhh-ccCcEEEeecchHh---hhcCCC
Q 010684 307 VIYVNFGSFIFMNKQQLIEVAMGLVNSN-HPFLWIIRPDLVTGETADLPAEFEVKA-KEKGFVASWCPQEE---VLKHPS 381 (504)
Q Consensus 307 ~V~vs~GS~~~~~~~~~~~~~~a~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~nv~~~~~vpq~~---lL~~~~ 381 (504)
.+++..|+.. ..+.+..++++++..+ .+++++-.+. ..+.+.+.. ..++.+.+++++.+ ++..+|
T Consensus 264 ~~i~~vGrl~--~~K~~~~li~a~~~~~~~~l~ivG~G~--------~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~aD 333 (465)
T PLN02871 264 PLIVYVGRLG--AEKNLDFLKRVMERLPGARLAFVGDGP--------YREELEKMFAGTPTVFTGMLQGDELSQAYASGD 333 (465)
T ss_pred eEEEEeCCCc--hhhhHHHHHHHHHhCCCcEEEEEeCCh--------HHHHHHHHhccCCeEEeccCCHHHHHHHHHHCC
Confidence 4555668764 2334566777777654 4555443322 112222211 25788999998654 888899
Q ss_pred cceEEecCC----chhHHHhhhcCCcEEecCCCCCcchhhhhhhhh---cceeEEecCCCCCccHHHHHHHHHHHhcCch
Q 010684 382 IGGFLTHCG----WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNE---WGVGMEINGDDEDVIRNEVEKLVREMMEGEK 454 (504)
Q Consensus 382 ~~~~I~HGG----~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~---~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~~ 454 (504)
+ +|.-.. ..++.||+++|+|+|+....+ ....+ +. -+.|..++. -++++++++|.++++|++
T Consensus 334 v--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg----~~eiv-~~~~~~~~G~lv~~----~d~~~la~~i~~ll~~~~ 402 (465)
T PLN02871 334 V--FVMPSESETLGFVVLEAMASGVPVVAARAGG----IPDII-PPDQEGKTGFLYTP----GDVDDCVEKLETLLADPE 402 (465)
T ss_pred E--EEECCcccccCcHHHHHHHcCCCEEEcCCCC----cHhhh-hcCCCCCceEEeCC----CCHHHHHHHHHHHHhCHH
Confidence 8 885432 457899999999999876532 22233 43 577887773 367999999999999874
Q ss_pred H-HHHHHHHHHHHH
Q 010684 455 G-KQMRNKAMEWKG 467 (504)
Q Consensus 455 ~-~~~~~~a~~l~~ 467 (504)
- +.+.+++++..+
T Consensus 403 ~~~~~~~~a~~~~~ 416 (465)
T PLN02871 403 LRERMGAAAREEVE 416 (465)
T ss_pred HHHHHHHHHHHHHH
Confidence 3 445555555443
No 47
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.19 E-value=5.2e-08 Score=97.17 Aligned_cols=144 Identities=15% Similarity=0.208 Sum_probs=88.3
Q ss_pred CeeEEEecCCcc-ccCHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCCCCCCchHHHH-----hhccCcEEEeecchHh-
Q 010684 305 KSVIYVNFGSFI-FMNKQQLIEVAMGLVNS--NHPFLWIIRPDLVTGETADLPAEFEV-----KAKEKGFVASWCPQEE- 375 (504)
Q Consensus 305 ~~~V~vs~GS~~-~~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~nv~~~~~vpq~~- 375 (504)
++.+++..|+.. ....+.+..++..+... +.++++..++. ..+.+.+ ...+++.+.+++|+.+
T Consensus 201 ~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~--------~~~~~~~~~~~~~~~~~v~~~g~~~~~~~ 272 (374)
T cd03817 201 DEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDGP--------EREELEELARELGLADRVIFTGFVPREEL 272 (374)
T ss_pred CCeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCCc--------hHHHHHHHHHHcCCCCcEEEeccCChHHH
Confidence 345666678764 33344444444444432 34444443322 1112211 2357899999998764
Q ss_pred --hhcCCCcceEEec----CCchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHH
Q 010684 376 --VLKHPSIGGFLTH----CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREM 449 (504)
Q Consensus 376 --lL~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~v 449 (504)
++..+++ +|.. |+..++.||+++|+|+|+... ...+..+ +..+.|..++. .. . ++.++|.++
T Consensus 273 ~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i-~~~~~g~~~~~--~~--~-~~~~~i~~l 340 (374)
T cd03817 273 PDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLV-ADGENGFLFPP--GD--E-ALAEALLRL 340 (374)
T ss_pred HHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhhe-ecCceeEEeCC--CC--H-HHHHHHHHH
Confidence 7888998 7743 345789999999999998654 3455555 55577888774 22 2 999999999
Q ss_pred hcCchH-HHHHHHHHHHHHH
Q 010684 450 MEGEKG-KQMRNKAMEWKGL 468 (504)
Q Consensus 450 l~~~~~-~~~~~~a~~l~~~ 468 (504)
+++++. +.+.+++++..+.
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~ 360 (374)
T cd03817 341 LQDPELRRRLSKNAEESAEK 360 (374)
T ss_pred HhChHHHHHHHHHHHHHHHH
Confidence 998842 3344444444443
No 48
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.19 E-value=5.4e-08 Score=96.63 Aligned_cols=133 Identities=14% Similarity=0.128 Sum_probs=82.1
Q ss_pred CCeeEEEecCCcc-ccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHhhccCcEEEeecchHh---hhcC
Q 010684 304 PKSVIYVNFGSFI-FMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEE---VLKH 379 (504)
Q Consensus 304 ~~~~V~vs~GS~~-~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~---lL~~ 379 (504)
.++.+++..|+.. ....+.+...+..+...+.++++.-.+... ..........+++.+.+++++.+ ++..
T Consensus 189 ~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~l~i~G~~~~~------~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ 262 (359)
T cd03823 189 GGRLRFGFIGQLTPHKGVDLLLEAFKRLPRGDIELVIVGNGLEL------EEESYELEGDPRVEFLGAYPQEEIDDFYAE 262 (359)
T ss_pred CCceEEEEEecCccccCHHHHHHHHHHHHhcCcEEEEEcCchhh------hHHHHhhcCCCeEEEeCCCCHHHHHHHHHh
Confidence 3346667778764 223333333333333324455444332210 00000012347899999997654 6888
Q ss_pred CCcceEEec----CC-chhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCc
Q 010684 380 PSIGGFLTH----CG-WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE 453 (504)
Q Consensus 380 ~~~~~~I~H----GG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~ 453 (504)
+++ +|+. .| ..++.||+++|+|+|+.+. ..+...+ +..+.|..+.. -+.++++++|.++++|+
T Consensus 263 ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i-~~~~~g~~~~~----~d~~~l~~~i~~l~~~~ 330 (359)
T cd03823 263 IDV--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELV-RDGVNGLLFPP----GDAEDLAAALERLIDDP 330 (359)
T ss_pred CCE--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHh-cCCCcEEEECC----CCHHHHHHHHHHHHhCh
Confidence 998 7732 33 4489999999999998765 3455566 55457877774 35899999999999987
No 49
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.18 E-value=1.4e-09 Score=99.00 Aligned_cols=145 Identities=13% Similarity=0.143 Sum_probs=106.0
Q ss_pred CeeEEEecCCccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHh--hccCcEEEeecchH-hhhcCCC
Q 010684 305 KSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVK--AKEKGFVASWCPQE-EVLKHPS 381 (504)
Q Consensus 305 ~~~V~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~nv~~~~~vpq~-~lL~~~~ 381 (504)
+.-|+|++|.. .+....-.++..+.+.++.+-.+++.. +.-.+.+..+ ..+|+.+.-....+ .+++.++
T Consensus 158 ~r~ilI~lGGs--Dpk~lt~kvl~~L~~~~~nl~iV~gs~------~p~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d 229 (318)
T COG3980 158 KRDILITLGGS--DPKNLTLKVLAELEQKNVNLHIVVGSS------NPTLKNLRKRAEKYPNINLYIDTNDMAELMKEAD 229 (318)
T ss_pred hheEEEEccCC--ChhhhHHHHHHHhhccCeeEEEEecCC------CcchhHHHHHHhhCCCeeeEecchhHHHHHHhcc
Confidence 44699999854 344456667777887776666666633 1122333322 23566666555544 5999999
Q ss_pred cceEEecCCchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCchHHHHHHH
Q 010684 382 IGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNK 461 (504)
Q Consensus 382 ~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~ 461 (504)
+ .|+.|| .|+.|++.-|+|-+++|+...|---|+.. +.+|+-..+.. .++.......+.++.+|. ..+.+
T Consensus 230 ~--aI~AaG-stlyEa~~lgvP~l~l~~a~NQ~~~a~~f-~~lg~~~~l~~---~l~~~~~~~~~~~i~~d~---~~rk~ 299 (318)
T COG3980 230 L--AISAAG-STLYEALLLGVPSLVLPLAENQIATAKEF-EALGIIKQLGY---HLKDLAKDYEILQIQKDY---ARRKN 299 (318)
T ss_pred h--heeccc-hHHHHHHHhcCCceEEeeeccHHHHHHHH-HhcCchhhccC---CCchHHHHHHHHHhhhCH---HHhhh
Confidence 9 999888 59999999999999999999999999999 88899888875 478888888888998888 66655
Q ss_pred HHHHHH
Q 010684 462 AMEWKG 467 (504)
Q Consensus 462 a~~l~~ 467 (504)
...-.+
T Consensus 300 l~~~~~ 305 (318)
T COG3980 300 LSFGSK 305 (318)
T ss_pred hhhccc
Confidence 544333
No 50
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.16 E-value=5.2e-08 Score=97.85 Aligned_cols=93 Identities=13% Similarity=0.127 Sum_probs=66.3
Q ss_pred ccCcEEEeecchH-hhhcCCCcceEEec----CCchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCC
Q 010684 362 KEKGFVASWCPQE-EVLKHPSIGGFLTH----CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDED 436 (504)
Q Consensus 362 ~~nv~~~~~vpq~-~lL~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~ 436 (504)
.+++.+.++.++. .++..+++ +|.- |...++.||+.+|+|+|+... ...+..+ +.-..|...+.
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~----~~~~e~i-~~~~~G~~~~~---- 320 (371)
T cd04962 252 QDDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASNA----GGIPEVV-KHGETGFLVDV---- 320 (371)
T ss_pred CceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCC----CCchhhh-cCCCceEEcCC----
Confidence 4678888887754 58989998 7632 345699999999999999654 3445555 45456766653
Q ss_pred ccHHHHHHHHHHHhcCchH-HHHHHHHHHH
Q 010684 437 VIRNEVEKLVREMMEGEKG-KQMRNKAMEW 465 (504)
Q Consensus 437 ~~~~~l~~ai~~vl~~~~~-~~~~~~a~~l 465 (504)
-+.++++++|.+++++++. +++++++++.
T Consensus 321 ~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 350 (371)
T cd04962 321 GDVEAMAEYALSLLEDDELWQEFSRAARNR 350 (371)
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 4689999999999998743 3455555554
No 51
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.15 E-value=2.4e-07 Score=94.10 Aligned_cols=94 Identities=11% Similarity=0.127 Sum_probs=66.1
Q ss_pred ccCcEEEeecchHh---hhcCCCcceEEe---cCC-chhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCC
Q 010684 362 KEKGFVASWCPQEE---VLKHPSIGGFLT---HCG-WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDD 434 (504)
Q Consensus 362 ~~nv~~~~~vpq~~---lL~~~~~~~~I~---HGG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 434 (504)
.++|.+.+++|+.+ +|..+++ +|. +.| ..++.||+++|+|+|+... ......+ +.-..|..++.
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas~~----~g~~e~i-~~~~~G~lv~~-- 350 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGSDT----APVREVI-TDGENGLLVDF-- 350 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEcCC----CCchhhc-ccCCceEEcCC--
Confidence 36899999999765 6778888 663 233 3489999999999998644 3445555 44356776663
Q ss_pred CCccHHHHHHHHHHHhcCchH-HHHHHHHHHHH
Q 010684 435 EDVIRNEVEKLVREMMEGEKG-KQMRNKAMEWK 466 (504)
Q Consensus 435 ~~~~~~~l~~ai~~vl~~~~~-~~~~~~a~~l~ 466 (504)
-++++++++|.++++|++. +.+.+++++..
T Consensus 351 --~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~ 381 (396)
T cd03818 351 --FDPDALAAAVIELLDDPARRARLRRAARRTA 381 (396)
T ss_pred --CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 4689999999999998832 34444444443
No 52
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.14 E-value=7.3e-08 Score=96.57 Aligned_cols=142 Identities=15% Similarity=0.189 Sum_probs=85.6
Q ss_pred CeeEEEecCCcc-ccCHHHHHHHHHHHHhC-CCCEEEEEcCCCCCCCCCCCchHHH----HhhccCcEEEeecchHh---
Q 010684 305 KSVIYVNFGSFI-FMNKQQLIEVAMGLVNS-NHPFLWIIRPDLVTGETADLPAEFE----VKAKEKGFVASWCPQEE--- 375 (504)
Q Consensus 305 ~~~V~vs~GS~~-~~~~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~nv~~~~~vpq~~--- 375 (504)
++.+++..|+.. ....+.+...+..+... +.++++. |... ....+. ....+|+.+.+++++.+
T Consensus 219 ~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i~-G~~~-------~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~ 290 (394)
T cd03794 219 DKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLIV-GDGP-------EKEELKELAKALGLDNVTFLGRVPKEELPE 290 (394)
T ss_pred CcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEEe-CCcc-------cHHHHHHHHHHcCCCcEEEeCCCChHHHHH
Confidence 346777778765 33344444444444433 3444433 3221 111221 12347899999998654
Q ss_pred hhcCCCcceEEecCC---------chhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHH
Q 010684 376 VLKHPSIGGFLTHCG---------WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLV 446 (504)
Q Consensus 376 lL~~~~~~~~I~HGG---------~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai 446 (504)
++..+++ +|.... -+++.||+++|+|+|+.+..+.+.. + ...+.|..++. -+.++++++|
T Consensus 291 ~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~----~-~~~~~g~~~~~----~~~~~l~~~i 359 (394)
T cd03794 291 LLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAEL----V-EEAGAGLVVPP----GDPEALAAAI 359 (394)
T ss_pred HHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhh----h-ccCCcceEeCC----CCHHHHHHHH
Confidence 7888888 664322 2347999999999999988654432 3 33366777663 3789999999
Q ss_pred HHHhcCchH-HHHHHHHHHH
Q 010684 447 REMMEGEKG-KQMRNKAMEW 465 (504)
Q Consensus 447 ~~vl~~~~~-~~~~~~a~~l 465 (504)
.++++|++- +.+++++++.
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~ 379 (394)
T cd03794 360 LELLDDPEERAEMGENGRRY 379 (394)
T ss_pred HHHHhChHHHHHHHHHHHHH
Confidence 999988732 3333444333
No 53
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.10 E-value=2.6e-07 Score=91.53 Aligned_cols=82 Identities=10% Similarity=0.190 Sum_probs=64.4
Q ss_pred hccCcEEEeecchH---hhhcCCCcceEEe----cCCchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCC
Q 010684 361 AKEKGFVASWCPQE---EVLKHPSIGGFLT----HCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGD 433 (504)
Q Consensus 361 ~~~nv~~~~~vpq~---~lL~~~~~~~~I~----HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~ 433 (504)
.++++.+.+++++. .++..+++ +|. -|..+++.||+++|+|+|+.+. ..+...+ +..+.|...+.
T Consensus 254 ~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~-~~~~~g~~~~~- 325 (374)
T cd03801 254 LGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVV-EDGETGLLVPP- 325 (374)
T ss_pred CCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHh-cCCcceEEeCC-
Confidence 46799999999754 47888888 773 3557799999999999998776 3455556 55577877773
Q ss_pred CCCccHHHHHHHHHHHhcCc
Q 010684 434 DEDVIRNEVEKLVREMMEGE 453 (504)
Q Consensus 434 ~~~~~~~~l~~ai~~vl~~~ 453 (504)
.+++++.++|.++++++
T Consensus 326 ---~~~~~l~~~i~~~~~~~ 342 (374)
T cd03801 326 ---GDPEALAEAILRLLDDP 342 (374)
T ss_pred ---CCHHHHHHHHHHHHcCh
Confidence 45899999999999988
No 54
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.06 E-value=6.9e-07 Score=91.20 Aligned_cols=91 Identities=15% Similarity=0.252 Sum_probs=63.4
Q ss_pred cCcEEE-eecchHh---hhcCCCcceEEe-c------CCchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEec
Q 010684 363 EKGFVA-SWCPQEE---VLKHPSIGGFLT-H------CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEIN 431 (504)
Q Consensus 363 ~nv~~~-~~vpq~~---lL~~~~~~~~I~-H------GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~ 431 (504)
+++.+. +|+|..+ +|..+++ +|. + |--.++.||+++|+|+|+... ......+ +.-+.|..+.
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~----~~~~eiv-~~~~~G~lv~ 366 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCALDF----KCIDELV-KHGENGLVFG 366 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHHHHHHHHcCCCEEEeCC----CCHHHHh-cCCCCEEEEC
Confidence 455555 5888554 6888999 663 1 123479999999999998654 2344455 6656787653
Q ss_pred CCCCCccHHHHHHHHHHHhcC---chH-HHHHHHHHHHH
Q 010684 432 GDDEDVIRNEVEKLVREMMEG---EKG-KQMRNKAMEWK 466 (504)
Q Consensus 432 ~~~~~~~~~~l~~ai~~vl~~---~~~-~~~~~~a~~l~ 466 (504)
+.++++++|.++++| ++. +.|.+++++..
T Consensus 367 ------d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 367 ------DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred ------CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 589999999999998 533 55666665555
No 55
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.06 E-value=4.7e-07 Score=91.71 Aligned_cols=92 Identities=10% Similarity=0.196 Sum_probs=67.7
Q ss_pred ccCcEEEeecchHh---hhcCCCcceEEec----CCchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCC
Q 010684 362 KEKGFVASWCPQEE---VLKHPSIGGFLTH----CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDD 434 (504)
Q Consensus 362 ~~nv~~~~~vpq~~---lL~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 434 (504)
.+++.+.+|+|+.+ ++..+++ +|+. |-..++.||+++|+|+|+....+ ....+ +..+.|...+.
T Consensus 282 ~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~----~~e~i-~~~~~g~~~~~-- 352 (398)
T cd03800 282 IDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVGG----PRDIV-VDGVTGLLVDP-- 352 (398)
T ss_pred CceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCCC----HHHHc-cCCCCeEEeCC--
Confidence 47899999999765 6888998 7754 32468999999999999876543 44455 66578888773
Q ss_pred CCccHHHHHHHHHHHhcCchH-HHHHHHHHH
Q 010684 435 EDVIRNEVEKLVREMMEGEKG-KQMRNKAME 464 (504)
Q Consensus 435 ~~~~~~~l~~ai~~vl~~~~~-~~~~~~a~~ 464 (504)
-+.++++++|.+++++++. +.+.+++++
T Consensus 353 --~~~~~l~~~i~~l~~~~~~~~~~~~~a~~ 381 (398)
T cd03800 353 --RDPEALAAALRRLLTDPALRRRLSRAGLR 381 (398)
T ss_pred --CCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 3689999999999998732 334444443
No 56
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.05 E-value=6.5e-07 Score=88.51 Aligned_cols=136 Identities=13% Similarity=0.113 Sum_probs=83.1
Q ss_pred CCeeEEEecCCcc-ccCHHHHHHHHHHHHhCC--CCEEEEEcCCCCCCCCCCCchH-HH-HhhccCcEEEeecch-Hhhh
Q 010684 304 PKSVIYVNFGSFI-FMNKQQLIEVAMGLVNSN--HPFLWIIRPDLVTGETADLPAE-FE-VKAKEKGFVASWCPQ-EEVL 377 (504)
Q Consensus 304 ~~~~V~vs~GS~~-~~~~~~~~~~~~a~~~~~--~~~i~~~~~~~~~~~~~~~~~~-~~-~~~~~nv~~~~~vpq-~~lL 377 (504)
.++.+++..|+.. ....+.+...+..+.+.+ .++++...+..... .... .. ....+++.+.++..+ ..++
T Consensus 186 ~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~----~~~~~~~~~~~~~~v~~~g~~~~~~~~~ 261 (359)
T cd03808 186 EDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEENP----AAILEIEKLGLEGRVEFLGFRDDVPELL 261 (359)
T ss_pred CCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcchh----hHHHHHHhcCCcceEEEeeccccHHHHH
Confidence 3457777788774 333444444444444323 34444333221000 0000 00 112467888887554 3589
Q ss_pred cCCCcceEEecCC----chhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCc
Q 010684 378 KHPSIGGFLTHCG----WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE 453 (504)
Q Consensus 378 ~~~~~~~~I~HGG----~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~ 453 (504)
..+++ +|.-.. .+++.||+.+|+|+|+.+.. .+...+ +..+.|..++. -++++++++|.+++.|+
T Consensus 262 ~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i-~~~~~g~~~~~----~~~~~~~~~i~~l~~~~ 330 (359)
T cd03808 262 AAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREAV-IDGVNGFLVPP----GDAEALADAIERLIEDP 330 (359)
T ss_pred HhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC----Cchhhh-hcCcceEEECC----CCHHHHHHHHHHHHhCH
Confidence 99998 775443 67999999999999996553 334455 55567877763 46899999999999988
Q ss_pred h
Q 010684 454 K 454 (504)
Q Consensus 454 ~ 454 (504)
+
T Consensus 331 ~ 331 (359)
T cd03808 331 E 331 (359)
T ss_pred H
Confidence 3
No 57
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.05 E-value=6e-07 Score=89.21 Aligned_cols=132 Identities=12% Similarity=0.154 Sum_probs=83.3
Q ss_pred CeeEEEecCCccc-cCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHH-----hhccCcEEEeecchH---h
Q 010684 305 KSVIYVNFGSFIF-MNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEV-----KAKEKGFVASWCPQE---E 375 (504)
Q Consensus 305 ~~~V~vs~GS~~~-~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~nv~~~~~vpq~---~ 375 (504)
++.+++..|+... ...+.+...+..+...+..+.+.+.+... ....+.+ ...+|+.+.+++++. .
T Consensus 201 ~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~------~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~ 274 (377)
T cd03798 201 DKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGP------LREALEALAAELGLEDRVTFLGAVPHEEVPA 274 (377)
T ss_pred CceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCCc------chHHHHHHHHhcCCcceEEEeCCCCHHHHHH
Confidence 3466777787652 23333334444444333344444333210 1111211 135789999999875 4
Q ss_pred hhcCCCcceEE----ecCCchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhc
Q 010684 376 VLKHPSIGGFL----THCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMME 451 (504)
Q Consensus 376 lL~~~~~~~~I----~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~ 451 (504)
++..+++ +| +-|..+++.||+++|+|+|+-+.. .....+ +..+.|...+ .-+.++++++|.++++
T Consensus 275 ~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~-~~~~~g~~~~----~~~~~~l~~~i~~~~~ 343 (377)
T cd03798 275 YYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEII-TDGENGLLVP----PGDPEALAEAILRLLA 343 (377)
T ss_pred HHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHh-cCCcceeEEC----CCCHHHHHHHHHHHhc
Confidence 7888888 66 235677899999999999986653 344455 5656677766 3578999999999999
Q ss_pred Cc
Q 010684 452 GE 453 (504)
Q Consensus 452 ~~ 453 (504)
++
T Consensus 344 ~~ 345 (377)
T cd03798 344 DP 345 (377)
T ss_pred Cc
Confidence 88
No 58
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.04 E-value=7.1e-07 Score=91.19 Aligned_cols=96 Identities=15% Similarity=0.184 Sum_probs=67.0
Q ss_pred cCcEEEeecchHh---hhcCCCcceEEecCCc------hhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCC
Q 010684 363 EKGFVASWCPQEE---VLKHPSIGGFLTHCGW------NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGD 433 (504)
Q Consensus 363 ~nv~~~~~vpq~~---lL~~~~~~~~I~HGG~------gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~ 433 (504)
+|+.+.+|+|+.+ ++..+|+.++.+..+. +.+.|++.+|+|+|+....+. .....+ + +.|+.++.
T Consensus 284 ~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~--~~~~~i-~--~~G~~~~~- 357 (412)
T PRK10307 284 PNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGT--ELGQLV-E--GIGVCVEP- 357 (412)
T ss_pred CceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCc--hHHHHH-h--CCcEEeCC-
Confidence 4899999998654 7889998444444332 236899999999999875431 122334 4 67877763
Q ss_pred CCCccHHHHHHHHHHHhcCchH-HHHHHHHHHHHH
Q 010684 434 DEDVIRNEVEKLVREMMEGEKG-KQMRNKAMEWKG 467 (504)
Q Consensus 434 ~~~~~~~~l~~ai~~vl~~~~~-~~~~~~a~~l~~ 467 (504)
-+.++++++|.++++|++- +.+.+++++..+
T Consensus 358 ---~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~ 389 (412)
T PRK10307 358 ---ESVEALVAAIAALARQALLRPKLGTVAREYAE 389 (412)
T ss_pred ---CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 4679999999999988743 556666666544
No 59
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.00 E-value=1.4e-06 Score=86.94 Aligned_cols=93 Identities=12% Similarity=0.101 Sum_probs=64.8
Q ss_pred hccCcEEEeecc-hH---hhhcCCCcceEEec----CCchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecC
Q 010684 361 AKEKGFVASWCP-QE---EVLKHPSIGGFLTH----CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEING 432 (504)
Q Consensus 361 ~~~nv~~~~~vp-q~---~lL~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~ 432 (504)
...++.+.+|++ +. .++..+++ +|.- |..+++.||+++|+|+|+.... .....+ ...+.|..++
T Consensus 242 ~~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~-~~~~~g~~~~- 313 (365)
T cd03825 242 LPFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIV-DHGVTGYLAK- 313 (365)
T ss_pred CCCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCC----CChhhe-eCCCceEEeC-
Confidence 356888889998 43 47888998 8774 3357999999999999987543 222334 3434676665
Q ss_pred CCCCccHHHHHHHHHHHhcCchH-HHHHHHHHH
Q 010684 433 DDEDVIRNEVEKLVREMMEGEKG-KQMRNKAME 464 (504)
Q Consensus 433 ~~~~~~~~~l~~ai~~vl~~~~~-~~~~~~a~~ 464 (504)
..+.+++++++.+++++++. +.+.+++++
T Consensus 314 ---~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 343 (365)
T cd03825 314 ---PGDPEDLAEGIEWLLADPDEREELGEAARE 343 (365)
T ss_pred ---CCCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 35789999999999998842 333444443
No 60
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.99 E-value=3.5e-07 Score=91.78 Aligned_cols=135 Identities=10% Similarity=0.121 Sum_probs=83.0
Q ss_pred eeEEEecCCccccCHHHHHHHHHHHHhC-----CCCEEEEEcCCCCCCCCCCCchHHHHh--hccCcEEEeecchH---h
Q 010684 306 SVIYVNFGSFIFMNKQQLIEVAMGLVNS-----NHPFLWIIRPDLVTGETADLPAEFEVK--AKEKGFVASWCPQE---E 375 (504)
Q Consensus 306 ~~V~vs~GS~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~nv~~~~~vpq~---~ 375 (504)
..|.++++-.... .+.+..+++++..+ +.++++...... .....+.+. ..+++.+.+.+++. .
T Consensus 198 ~~vl~~~hr~~~~-~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 270 (365)
T TIGR00236 198 RYILLTLHRRENV-GEPLENIFKAIREIVEEFEDVQIVYPVHLNP------VVREPLHKHLGDSKRVHLIEPLEYLDFLN 270 (365)
T ss_pred CEEEEecCchhhh-hhHHHHHHHHHHHHHHHCCCCEEEEECCCCh------HHHHHHHHHhCCCCCEEEECCCChHHHHH
Confidence 4666655432111 13466677776653 345565543321 011112222 23688888766644 5
Q ss_pred hhcCCCcceEEecCCchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCchH
Q 010684 376 VLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKG 455 (504)
Q Consensus 376 lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~~~ 455 (504)
++..+++ +|+-.|. .+.||+++|+|+|+++..++++. .+ + .|.+..+. -++++|.+++.++++|+
T Consensus 271 ~l~~ad~--vv~~Sg~-~~~EA~a~g~PvI~~~~~~~~~e---~~-~-~g~~~lv~-----~d~~~i~~ai~~ll~~~-- 335 (365)
T TIGR00236 271 LAANSHL--ILTDSGG-VQEEAPSLGKPVLVLRDTTERPE---TV-E-AGTNKLVG-----TDKENITKAAKRLLTDP-- 335 (365)
T ss_pred HHHhCCE--EEECChh-HHHHHHHcCCCEEECCCCCCChH---HH-h-cCceEEeC-----CCHHHHHHHHHHHHhCh--
Confidence 7788888 9987764 47999999999999976555543 22 3 36665443 36899999999999988
Q ss_pred HHHHHHHH
Q 010684 456 KQMRNKAM 463 (504)
Q Consensus 456 ~~~~~~a~ 463 (504)
..+++..
T Consensus 336 -~~~~~~~ 342 (365)
T TIGR00236 336 -DEYKKMS 342 (365)
T ss_pred -HHHHHhh
Confidence 5555443
No 61
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.95 E-value=1.6e-06 Score=86.34 Aligned_cols=92 Identities=14% Similarity=0.173 Sum_probs=65.3
Q ss_pred hccCcEEEeecchHh---hhcCCCcceEEecC----CchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCC
Q 010684 361 AKEKGFVASWCPQEE---VLKHPSIGGFLTHC----GWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGD 433 (504)
Q Consensus 361 ~~~nv~~~~~vpq~~---lL~~~~~~~~I~HG----G~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~ 433 (504)
+.+++.+.+|+++.+ ++..+++ +|.-. -..++.||+++|+|+|+.+. ......+ .. +.|.....
T Consensus 260 ~~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~~~~-~~-~~~~~~~~- 330 (375)
T cd03821 260 LEDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDK----VPWQELI-EY-GCGWVVDD- 330 (375)
T ss_pred ccceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCC----CCHHHHh-hc-CceEEeCC-
Confidence 357899999999654 6888888 65432 25689999999999999754 3345555 55 77777663
Q ss_pred CCCccHHHHHHHHHHHhcCchH-HHHHHHHHHH
Q 010684 434 DEDVIRNEVEKLVREMMEGEKG-KQMRNKAMEW 465 (504)
Q Consensus 434 ~~~~~~~~l~~ai~~vl~~~~~-~~~~~~a~~l 465 (504)
+.++++++|.+++++++- +.+.+++++.
T Consensus 331 ----~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 359 (375)
T cd03821 331 ----DVDALAAALRRALELPQRLKAMGENGRAL 359 (375)
T ss_pred ----ChHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 349999999999998732 3344444444
No 62
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.95 E-value=9.7e-07 Score=87.88 Aligned_cols=143 Identities=13% Similarity=0.123 Sum_probs=88.2
Q ss_pred eeEEEecCCccccCHHHHHHHHHHHHhCC-CCEEEEEcCCCCCCCCCCCchHHHH-----hhccCcEEEeecchH---hh
Q 010684 306 SVIYVNFGSFIFMNKQQLIEVAMGLVNSN-HPFLWIIRPDLVTGETADLPAEFEV-----KAKEKGFVASWCPQE---EV 376 (504)
Q Consensus 306 ~~V~vs~GS~~~~~~~~~~~~~~a~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~nv~~~~~vpq~---~l 376 (504)
..+++..|+.. ..+....++++++.+. .++++...+. ....+.+ ...+||.+.+|+|+. .+
T Consensus 191 ~~~i~~~G~~~--~~K~~~~li~a~~~l~~~~l~i~G~g~--------~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~ 260 (357)
T cd03795 191 RPFFLFVGRLV--YYKGLDVLLEAAAALPDAPLVIVGEGP--------LEAELEALAAALGLLDRVRFLGRLDDEEKAAL 260 (357)
T ss_pred CcEEEEecccc--cccCHHHHHHHHHhccCcEEEEEeCCh--------hHHHHHHHHHhcCCcceEEEcCCCCHHHHHHH
Confidence 45667778764 2233555667777666 4444443322 1112211 235799999999975 47
Q ss_pred hcCCCcceEEe---cCCc-hhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcC
Q 010684 377 LKHPSIGGFLT---HCGW-NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEG 452 (504)
Q Consensus 377 L~~~~~~~~I~---HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~ 452 (504)
+..+++.++.+ +.|. .++.||+++|+|+|+....+....+.. .-+.|...+. -+.++++++|.++++|
T Consensus 261 ~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~----~~~~g~~~~~----~d~~~~~~~i~~l~~~ 332 (357)
T cd03795 261 LAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL----HGVTGLVVPP----GDPAALAEAIRRLLED 332 (357)
T ss_pred HHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh----CCCceEEeCC----CCHHHHHHHHHHHHHC
Confidence 88899822222 2343 479999999999999765554433322 1366766663 4789999999999998
Q ss_pred chH-HHHHHHHHHHH
Q 010684 453 EKG-KQMRNKAMEWK 466 (504)
Q Consensus 453 ~~~-~~~~~~a~~l~ 466 (504)
++. +.+++++++..
T Consensus 333 ~~~~~~~~~~~~~~~ 347 (357)
T cd03795 333 PELRERLGEAARERA 347 (357)
T ss_pred HHHHHHHHHHHHHHH
Confidence 843 34444444433
No 63
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.94 E-value=1.9e-06 Score=88.45 Aligned_cols=93 Identities=13% Similarity=0.147 Sum_probs=65.3
Q ss_pred CcEEEeecch-HhhhcCCCcceEEec-----CCchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCc
Q 010684 364 KGFVASWCPQ-EEVLKHPSIGGFLTH-----CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDV 437 (504)
Q Consensus 364 nv~~~~~vpq-~~lL~~~~~~~~I~H-----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~ 437 (504)
++++.+...+ ..+++.+|+ ++.. ||..++.||+++|+|+|+.|...++.+....+ .+.|.++...
T Consensus 303 ~v~l~~~~~el~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~-~~~g~~~~~~------ 373 (425)
T PRK05749 303 DVLLGDTMGELGLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERL-LQAGAAIQVE------ 373 (425)
T ss_pred cEEEEecHHHHHHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHH-HHCCCeEEEC------
Confidence 3444454433 358888887 5442 34446999999999999999988888888777 5557666533
Q ss_pred cHHHHHHHHHHHhcCchH-HHHHHHHHHH
Q 010684 438 IRNEVEKLVREMMEGEKG-KQMRNKAMEW 465 (504)
Q Consensus 438 ~~~~l~~ai~~vl~~~~~-~~~~~~a~~l 465 (504)
++++++++|.++++|++. +.|.+++++.
T Consensus 374 d~~~La~~l~~ll~~~~~~~~m~~~a~~~ 402 (425)
T PRK05749 374 DAEDLAKAVTYLLTDPDARQAYGEAGVAF 402 (425)
T ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 579999999999998833 3344444443
No 64
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.91 E-value=2.4e-06 Score=86.50 Aligned_cols=93 Identities=11% Similarity=0.050 Sum_probs=65.1
Q ss_pred hccCcEEEeecchH---hhhcCCCcceEEec---CC-chhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCC
Q 010684 361 AKEKGFVASWCPQE---EVLKHPSIGGFLTH---CG-WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGD 433 (504)
Q Consensus 361 ~~~nv~~~~~vpq~---~lL~~~~~~~~I~H---GG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~ 433 (504)
+.++|.+.+++|+. .++..+++ ++.. -| ..++.||+++|+|+|+.-.. .....+ ...+.|...+
T Consensus 278 l~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~----~~~e~i-~~~~~g~~~~-- 348 (392)
T cd03805 278 LEDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSG----GPLETV-VDGETGFLCE-- 348 (392)
T ss_pred CCceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCC----CcHHHh-ccCCceEEeC--
Confidence 35789999999976 47888888 6642 22 35789999999999997543 233445 4545676654
Q ss_pred CCCccHHHHHHHHHHHhcCchH-HHHHHHHHHH
Q 010684 434 DEDVIRNEVEKLVREMMEGEKG-KQMRNKAMEW 465 (504)
Q Consensus 434 ~~~~~~~~l~~ai~~vl~~~~~-~~~~~~a~~l 465 (504)
. +.++++++|.+++++++. +.+.+++++.
T Consensus 349 --~-~~~~~a~~i~~l~~~~~~~~~~~~~a~~~ 378 (392)
T cd03805 349 --P-TPEEFAEAMLKLANDPDLADRMGAAGRKR 378 (392)
T ss_pred --C-CHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 2 689999999999998732 3444554443
No 65
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.91 E-value=3.1e-06 Score=82.41 Aligned_cols=136 Identities=20% Similarity=0.170 Sum_probs=79.6
Q ss_pred hhhhccccCCCCCeeEEEecCCcc----ccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHhhccCcEEE
Q 010684 293 TECLQWLDCKEPKSVIYVNFGSFI----FMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVA 368 (504)
Q Consensus 293 ~~l~~~l~~~~~~~~V~vs~GS~~----~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~ 368 (504)
++..+-+... +++.|++-+-+.. ....+.+..+++.+++.+..++..-.... .+ ...+.. ++.+.
T Consensus 168 ~~vl~~lg~~-~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~-------~~-~~~~~~--~~~i~ 236 (335)
T PF04007_consen 168 PEVLKELGLD-DEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYED-------QR-ELFEKY--GVIIP 236 (335)
T ss_pred hhHHHHcCCC-CCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcc-------hh-hHHhcc--Ccccc
Confidence 3334444422 4568888777643 12335567788889888876443332221 11 111111 23333
Q ss_pred -eecchHhhhcCCCcceEEecCCchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHH
Q 010684 369 -SWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVR 447 (504)
Q Consensus 369 -~~vpq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~ 447 (504)
.-++..++|.++++ +|+-|| ....||...|+|.|.+ +-++-...-+.+ .+.|. ... .-+++++.+.|.
T Consensus 237 ~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L-~~~Gl--l~~----~~~~~ei~~~v~ 305 (335)
T PF04007_consen 237 PEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYL-IEKGL--LYH----STDPDEIVEYVR 305 (335)
T ss_pred CCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHH-HHCCC--eEe----cCCHHHHHHHHH
Confidence 34566689999999 998777 8899999999999985 223322333455 34465 222 446778777665
Q ss_pred HHh
Q 010684 448 EMM 450 (504)
Q Consensus 448 ~vl 450 (504)
+.+
T Consensus 306 ~~~ 308 (335)
T PF04007_consen 306 KNL 308 (335)
T ss_pred Hhh
Confidence 544
No 66
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.91 E-value=2.8e-06 Score=83.49 Aligned_cols=95 Identities=18% Similarity=0.228 Sum_probs=64.5
Q ss_pred ccCcEEEeecch-HhhhcCCCcceEEecC----CchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCC
Q 010684 362 KEKGFVASWCPQ-EEVLKHPSIGGFLTHC----GWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDED 436 (504)
Q Consensus 362 ~~nv~~~~~vpq-~~lL~~~~~~~~I~HG----G~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~ 436 (504)
.+++.+.++... ..++..+++ +|.-. ..+++.||+++|+|+|+.+..+.+. .+.+....|...+.
T Consensus 234 ~~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~----~~~~~~~~g~~~~~---- 303 (348)
T cd03820 234 EDRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPS----EIIEDGVNGLLVPN---- 303 (348)
T ss_pred CCeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCchH----hhhccCcceEEeCC----
Confidence 457777777443 468888988 77654 2578999999999999876544332 23233237777763
Q ss_pred ccHHHHHHHHHHHhcCchH-HHHHHHHHHHH
Q 010684 437 VIRNEVEKLVREMMEGEKG-KQMRNKAMEWK 466 (504)
Q Consensus 437 ~~~~~l~~ai~~vl~~~~~-~~~~~~a~~l~ 466 (504)
-+.++++++|.++++|++. +.+.++++++.
T Consensus 304 ~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~ 334 (348)
T cd03820 304 GDVEALAEALLRLMEDEELRKRMGANARESA 334 (348)
T ss_pred CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 4679999999999999843 33444444333
No 67
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.88 E-value=5.9e-06 Score=84.18 Aligned_cols=94 Identities=13% Similarity=0.137 Sum_probs=67.5
Q ss_pred ccCcEEEeecchH---hhhcCCCcceEEe---c-CCchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCC
Q 010684 362 KEKGFVASWCPQE---EVLKHPSIGGFLT---H-CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDD 434 (504)
Q Consensus 362 ~~nv~~~~~vpq~---~lL~~~~~~~~I~---H-GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 434 (504)
.+++.+.+++++. ++|..+++ +|. + |...++.||+++|+|+|+.... .....+ +.-+.|..++.
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i-~~~~~g~~~~~-- 352 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAV-ADGETGLLVDG-- 352 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhh-ccCCceEECCC--
Confidence 4689999999865 47999998 764 2 3345899999999999997653 333445 55466776663
Q ss_pred CCccHHHHHHHHHHHhcCchH-HHHHHHHHHHH
Q 010684 435 EDVIRNEVEKLVREMMEGEKG-KQMRNKAMEWK 466 (504)
Q Consensus 435 ~~~~~~~l~~ai~~vl~~~~~-~~~~~~a~~l~ 466 (504)
-+.++++++|.+++++++- +.+++++++..
T Consensus 353 --~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~ 383 (405)
T TIGR03449 353 --HDPADWADALARLLDDPRTRIRMGAAAVEHA 383 (405)
T ss_pred --CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 4789999999999998732 44555555544
No 68
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.88 E-value=3e-07 Score=92.19 Aligned_cols=131 Identities=16% Similarity=0.139 Sum_probs=84.8
Q ss_pred CCeeEEEecCCcccc-CHHHHHHHHHHHHhCCC-CEEEEEcCCCCCCCCCCCchHHHH---hh---ccCcEEEeecchH-
Q 010684 304 PKSVIYVNFGSFIFM-NKQQLIEVAMGLVNSNH-PFLWIIRPDLVTGETADLPAEFEV---KA---KEKGFVASWCPQE- 374 (504)
Q Consensus 304 ~~~~V~vs~GS~~~~-~~~~~~~~~~a~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~---~~---~~nv~~~~~vpq~- 374 (504)
+++.|++++|..... ..+.+..++++++.+.. ++.+.+.+.. .....+.+ +. .+++.+.+..++.
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~------~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~ 270 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHP------RTRPRIREAGLEFLGHHPNVLLISPLGYLY 270 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCC------ChHHHHHHHHHhhccCCCCEEEECCcCHHH
Confidence 455788888876533 35567778888876543 2444443221 01112221 22 4678887765543
Q ss_pred --hhhcCCCcceEEecCCchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcC
Q 010684 375 --EVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEG 452 (504)
Q Consensus 375 --~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~ 452 (504)
.++..+++ +|+-.| |.+.||+++|+|+|+++.. |. +..+ .+.|++..+. -+.++|.++|.+++++
T Consensus 271 ~~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~-~~~g~~~~~~-----~~~~~i~~~i~~ll~~ 337 (363)
T cd03786 271 FLLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPET-VESGTNVLVG-----TDPEAILAAIEKLLSD 337 (363)
T ss_pred HHHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchh-hheeeEEecC-----CCHHHHHHHHHHHhcC
Confidence 46778998 999998 7888999999999998743 22 3334 3446665544 1589999999999998
Q ss_pred c
Q 010684 453 E 453 (504)
Q Consensus 453 ~ 453 (504)
+
T Consensus 338 ~ 338 (363)
T cd03786 338 E 338 (363)
T ss_pred c
Confidence 7
No 69
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.85 E-value=3.7e-06 Score=83.72 Aligned_cols=95 Identities=15% Similarity=0.260 Sum_probs=65.7
Q ss_pred hccCcEEEe-ecchH---hhhcCCCcceEEe----c--CCchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEe
Q 010684 361 AKEKGFVAS-WCPQE---EVLKHPSIGGFLT----H--CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEI 430 (504)
Q Consensus 361 ~~~nv~~~~-~vpq~---~lL~~~~~~~~I~----H--GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l 430 (504)
+.+++.+.+ |+|+. .+++.+++ +|. - |..+++.||+++|+|+|+.+..+ ...+ ..-+.|...
T Consensus 245 ~~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i-~~~~~g~~~ 316 (366)
T cd03822 245 LADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEV-LDGGTGLLV 316 (366)
T ss_pred CCCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hhee-eeCCCcEEE
Confidence 457888886 58864 48888888 663 2 44568999999999999987654 2334 344677776
Q ss_pred cCCCCCccHHHHHHHHHHHhcCchH-HHHHHHHHHHHH
Q 010684 431 NGDDEDVIRNEVEKLVREMMEGEKG-KQMRNKAMEWKG 467 (504)
Q Consensus 431 ~~~~~~~~~~~l~~ai~~vl~~~~~-~~~~~~a~~l~~ 467 (504)
.. -+.++++++|.++++|++. +++.+++++..+
T Consensus 317 ~~----~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 350 (366)
T cd03822 317 PP----GDPAALAEAIRRLLADPELAQALRARAREYAR 350 (366)
T ss_pred cC----CCHHHHHHHHHHHHcChHHHHHHHHHHHHHHh
Confidence 63 3589999999999998632 334444444443
No 70
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.82 E-value=1.2e-05 Score=79.96 Aligned_cols=83 Identities=14% Similarity=0.237 Sum_probs=62.4
Q ss_pred hccCcEEEeecchHh---hhcCCCcceEEe----------cCCchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhccee
Q 010684 361 AKEKGFVASWCPQEE---VLKHPSIGGFLT----------HCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVG 427 (504)
Q Consensus 361 ~~~nv~~~~~vpq~~---lL~~~~~~~~I~----------HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G 427 (504)
+++++.+.+++|+.+ ++..+++ +|. =|..+++.||+++|+|+|+.+..+ ....+ +....|
T Consensus 234 ~~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i-~~~~~g 306 (355)
T cd03799 234 LEDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELV-EDGETG 306 (355)
T ss_pred CCCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhh-hCCCce
Confidence 357899999998554 7788888 666 244579999999999999876532 22344 554478
Q ss_pred EEecCCCCCccHHHHHHHHHHHhcCch
Q 010684 428 MEINGDDEDVIRNEVEKLVREMMEGEK 454 (504)
Q Consensus 428 ~~l~~~~~~~~~~~l~~ai~~vl~~~~ 454 (504)
..+.. -+.++++++|.+++++++
T Consensus 307 ~~~~~----~~~~~l~~~i~~~~~~~~ 329 (355)
T cd03799 307 LLVPP----GDPEALADAIERLLDDPE 329 (355)
T ss_pred EEeCC----CCHHHHHHHHHHHHhCHH
Confidence 77763 378999999999999884
No 71
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.81 E-value=1e-05 Score=80.61 Aligned_cols=148 Identities=14% Similarity=0.109 Sum_probs=85.6
Q ss_pred CeeEEEecCCcc-ccCHHHHHHHHHHHHhCC--CCEEEEEcCCCCCCCCCCCchHHH---H--hhccCcEEEeecch-Hh
Q 010684 305 KSVIYVNFGSFI-FMNKQQLIEVAMGLVNSN--HPFLWIIRPDLVTGETADLPAEFE---V--KAKEKGFVASWCPQ-EE 375 (504)
Q Consensus 305 ~~~V~vs~GS~~-~~~~~~~~~~~~a~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~---~--~~~~nv~~~~~vpq-~~ 375 (504)
+..+++..|... ....+.+...+..+...+ .+++++-.+... ........ . ...+++.+.+|.+. ..
T Consensus 184 ~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~~----~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~ 259 (355)
T cd03819 184 GKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQGR----RFYYAELLELIKRLGLQDRVTFVGHCSDMPA 259 (355)
T ss_pred CceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCccc----chHHHHHHHHHHHcCCcceEEEcCCcccHHH
Confidence 346667778765 334455555555555533 344433332210 01111111 1 23468999998553 35
Q ss_pred hhcCCCcceEEec----CC-chhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHh
Q 010684 376 VLKHPSIGGFLTH----CG-WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMM 450 (504)
Q Consensus 376 lL~~~~~~~~I~H----GG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl 450 (504)
+|..+++ +|+= -| .+++.||+++|+|+|+.-.. .....+ ..-+.|..++. -+.++++++|.+++
T Consensus 260 ~l~~ad~--~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~----~~~e~i-~~~~~g~~~~~----~~~~~l~~~i~~~~ 328 (355)
T cd03819 260 AYALADI--VVSASTEPEAFGRTAVEAQAMGRPVIASDHG----GARETV-RPGETGLLVPP----GDAEALAQALDQIL 328 (355)
T ss_pred HHHhCCE--EEecCCCCCCCchHHHHHHhcCCCEEEcCCC----CcHHHH-hCCCceEEeCC----CCHHHHHHHHHHHH
Confidence 8888998 5532 23 45999999999999986543 334445 55457877763 47899999997666
Q ss_pred c-CchH-HHHHHHHHHHHH
Q 010684 451 E-GEKG-KQMRNKAMEWKG 467 (504)
Q Consensus 451 ~-~~~~-~~~~~~a~~l~~ 467 (504)
. +++- +++++++++..+
T Consensus 329 ~~~~~~~~~~~~~a~~~~~ 347 (355)
T cd03819 329 SLLPEGRAKMFAKARMCVE 347 (355)
T ss_pred hhCHHHHHHHHHHHHHHHH
Confidence 4 5521 344445544443
No 72
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.77 E-value=3e-05 Score=85.13 Aligned_cols=96 Identities=9% Similarity=0.133 Sum_probs=66.4
Q ss_pred hccCcEEEeecchHh---hhcCC----CcceEEec---CC-chhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEE
Q 010684 361 AKEKGFVASWCPQEE---VLKHP----SIGGFLTH---CG-WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGME 429 (504)
Q Consensus 361 ~~~nv~~~~~vpq~~---lL~~~----~~~~~I~H---GG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~ 429 (504)
+.++|.+.+++++.+ ++..+ ++ ||.- =| ..++.||+++|+|+|+....+ ....+ +.-.-|+.
T Consensus 546 L~g~V~FlG~v~~edvp~lYr~Ad~s~DV--FV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII-~~g~nGlL 618 (1050)
T TIGR02468 546 LYGQVAYPKHHKQSDVPDIYRLAAKTKGV--FINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIH-RVLDNGLL 618 (1050)
T ss_pred CCCeEEecCCCCHHHHHHHHHHhhhcCCe--eeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHh-ccCCcEEE
Confidence 347888888988765 56555 35 7764 34 358999999999999987543 22233 34345776
Q ss_pred ecCCCCCccHHHHHHHHHHHhcCchH-HHHHHHHHHHHH
Q 010684 430 INGDDEDVIRNEVEKLVREMMEGEKG-KQMRNKAMEWKG 467 (504)
Q Consensus 430 l~~~~~~~~~~~l~~ai~~vl~~~~~-~~~~~~a~~l~~ 467 (504)
++. -++++|+++|.++++|++- +.|.+++++..+
T Consensus 619 VdP----~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~ 653 (1050)
T TIGR02468 619 VDP----HDQQAIADALLKLVADKQLWAECRQNGLKNIH 653 (1050)
T ss_pred ECC----CCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 663 5789999999999999843 456666655543
No 73
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.73 E-value=2e-05 Score=80.11 Aligned_cols=79 Identities=16% Similarity=0.175 Sum_probs=56.3
Q ss_pred ccCcEEEeecchHh---hhcCCCcceEEe---cCCch-hHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCC
Q 010684 362 KEKGFVASWCPQEE---VLKHPSIGGFLT---HCGWN-SIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDD 434 (504)
Q Consensus 362 ~~nv~~~~~vpq~~---lL~~~~~~~~I~---HGG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 434 (504)
.+++.+.+|+|+.+ +++.+++ +|. +-|.| ++.||+++|+|+|+....+ ....+ +. |-+ .+..
T Consensus 249 ~~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i-~~-~~~-~~~~-- 317 (398)
T cd03796 249 QDRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVL-PP-DMI-LLAE-- 317 (398)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhe-eC-Cce-eecC--
Confidence 46799999998654 7888888 664 33444 9999999999999987743 22334 33 333 2232
Q ss_pred CCccHHHHHHHHHHHhcCc
Q 010684 435 EDVIRNEVEKLVREMMEGE 453 (504)
Q Consensus 435 ~~~~~~~l~~ai~~vl~~~ 453 (504)
.+.++++++|.+++++.
T Consensus 318 --~~~~~l~~~l~~~l~~~ 334 (398)
T cd03796 318 --PDVESIVRKLEEAISIL 334 (398)
T ss_pred --CCHHHHHHHHHHHHhCh
Confidence 27899999999999864
No 74
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.73 E-value=2.9e-06 Score=83.26 Aligned_cols=147 Identities=12% Similarity=0.046 Sum_probs=89.9
Q ss_pred eeEEEecCCccccCHHHHHHHHHHHHhCCCC-EEEEEcCCCCCCCCCCCchHHHHhhc--cCcEEEeecchHhhhcCCCc
Q 010684 306 SVIYVNFGSFIFMNKQQLIEVAMGLVNSNHP-FLWIIRPDLVTGETADLPAEFEVKAK--EKGFVASWCPQEEVLKHPSI 382 (504)
Q Consensus 306 ~~V~vs~GS~~~~~~~~~~~~~~a~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~--~nv~~~~~vpq~~lL~~~~~ 382 (504)
++|.+-.||..+--...+-.++++.+.+..+ ..+.+.... . . +.+.+... ..+.+.+ .-.+++..+|+
T Consensus 168 ~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~-----~-~-~~i~~~~~~~~~~~~~~--~~~~~m~~aDl 238 (347)
T PRK14089 168 GTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFF-----K-G-KDLKEIYGDISEFEISY--DTHKALLEAEF 238 (347)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCC-----c-H-HHHHHHHhcCCCcEEec--cHHHHHHhhhH
Confidence 6899999998643334555555665544322 333333221 0 1 12222121 1222332 33468999999
Q ss_pred ceEEecCCchhHHHhhhcCCcEEecCC--CCCcchhhhhhhh--hcceeEEecC-----------CCCCccHHHHHHHHH
Q 010684 383 GGFLTHCGWNSIVESLCSGVPMICWPF--TGDQPTNGRYVCN--EWGVGMEING-----------DDEDVIRNEVEKLVR 447 (504)
Q Consensus 383 ~~~I~HGG~gs~~eal~~GvP~v~~P~--~~DQ~~na~rv~~--~~G~G~~l~~-----------~~~~~~~~~l~~ai~ 447 (504)
+|+-.|..|+ |+..+|+|||+ ++ ..-|..||++++. ..|+.--+-. -+++.|++.|.+++.
T Consensus 239 --al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~~i~ 314 (347)
T PRK14089 239 --AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKHIGLANIFFDFLGKEPLHPELLQEFVTVENLLKAYK 314 (347)
T ss_pred --HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCeeehHHHhcCCCcccccCchhhcccCCHHHHHHHHH
Confidence 9999999999 99999999998 54 3478889999831 4455444410 025799999999998
Q ss_pred HHhcCchHHHHHHHHHHHHHHH
Q 010684 448 EMMEGEKGKQMRNKAMEWKGLA 469 (504)
Q Consensus 448 ~vl~~~~~~~~~~~a~~l~~~~ 469 (504)
+ +... ++++..+++.+.+
T Consensus 315 ~-~~~~---~~~~~~~~l~~~l 332 (347)
T PRK14089 315 E-MDRE---KFFKKSKELREYL 332 (347)
T ss_pred H-HHHH---HHHHHHHHHHHHh
Confidence 7 2222 5666666666655
No 75
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.68 E-value=3.2e-05 Score=77.41 Aligned_cols=93 Identities=15% Similarity=0.151 Sum_probs=67.7
Q ss_pred hccCcEEEeecchHh---hhcCCCcceEEec----------CCchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhccee
Q 010684 361 AKEKGFVASWCPQEE---VLKHPSIGGFLTH----------CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVG 427 (504)
Q Consensus 361 ~~~nv~~~~~vpq~~---lL~~~~~~~~I~H----------GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G 427 (504)
+.+++.+.+++|+.+ ++..+++ +|.- |-.+++.||+++|+|+|+-+..+ +...+ ...+.|
T Consensus 243 ~~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~----~~e~i-~~~~~g 315 (367)
T cd05844 243 LGGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGG----IPEAV-EDGETG 315 (367)
T ss_pred CCCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCC----chhhe-ecCCee
Confidence 457899999998654 6888898 6642 23579999999999999877643 55555 555778
Q ss_pred EEecCCCCCccHHHHHHHHHHHhcCchH-HHHHHHHHH
Q 010684 428 MEINGDDEDVIRNEVEKLVREMMEGEKG-KQMRNKAME 464 (504)
Q Consensus 428 ~~l~~~~~~~~~~~l~~ai~~vl~~~~~-~~~~~~a~~ 464 (504)
..++. -+.++++++|.++++|++. +++..++++
T Consensus 316 ~~~~~----~d~~~l~~~i~~l~~~~~~~~~~~~~a~~ 349 (367)
T cd05844 316 LLVPE----GDVAALAAALGRLLADPDLRARMGAAGRR 349 (367)
T ss_pred EEECC----CCHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 77763 4679999999999998832 334444443
No 76
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.67 E-value=1.9e-05 Score=77.85 Aligned_cols=127 Identities=11% Similarity=0.024 Sum_probs=78.5
Q ss_pred EEEecCCccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHh--hccCcEEEeecchHh---hhcCCCc
Q 010684 308 IYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVK--AKEKGFVASWCPQEE---VLKHPSI 382 (504)
Q Consensus 308 V~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~nv~~~~~vpq~~---lL~~~~~ 382 (504)
+.+..|... ..+....++++++..+.++++.-.+... ..+.....+. +.+++.+.+++++.+ +++.+++
T Consensus 173 ~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~~~----~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~ 246 (335)
T cd03802 173 YLLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVSDP----DYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARA 246 (335)
T ss_pred EEEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCCCH----HHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcE
Confidence 344456663 2223455667777777777665543310 0000111111 258999999998754 6888888
Q ss_pred ceEEe----cCC-chhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCc
Q 010684 383 GGFLT----HCG-WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE 453 (504)
Q Consensus 383 ~~~I~----HGG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~ 453 (504)
+|. +-| ..++.||+++|+|+|+.... .+...+ +.-..|...+ . .++++++|.+++...
T Consensus 247 --~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i-~~~~~g~l~~---~---~~~l~~~l~~l~~~~ 309 (335)
T cd03802 247 --LLFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVV-EDGVTGFLVD---S---VEELAAAVARADRLD 309 (335)
T ss_pred --EEeCCcccCCcchHHHHHHhcCCCEEEeCCC----Cchhhe-eCCCcEEEeC---C---HHHHHHHHHHHhccH
Confidence 553 234 35899999999999987663 233344 4423676655 3 899999999987544
No 77
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.66 E-value=2.2e-05 Score=78.56 Aligned_cols=144 Identities=15% Similarity=0.185 Sum_probs=87.1
Q ss_pred eeEEEecCCccccCHHHHHHHHHHHHhCC--CCEEEEEcCCCCCCCCCCCchHHHH-----hhccCcEEEeecch--H--
Q 010684 306 SVIYVNFGSFIFMNKQQLIEVAMGLVNSN--HPFLWIIRPDLVTGETADLPAEFEV-----KAKEKGFVASWCPQ--E-- 374 (504)
Q Consensus 306 ~~V~vs~GS~~~~~~~~~~~~~~a~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~nv~~~~~vpq--~-- 374 (504)
+.+++..|.......+.+..+++++.... .+++.+-.+. ..+.+.+ .++++|.+.+|+++ .
T Consensus 180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~--------~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~ 251 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGS--------DFEKCKAYSRELGIEQRIIWHGWQSQPWEVV 251 (359)
T ss_pred CcEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCc--------cHHHHHHHHHHcCCCCeEEEecccCCcHHHH
Confidence 35566667654222333556667776653 3344333222 1122221 24578999998754 2
Q ss_pred -hhhcCCCcceEEec----CCchhHHHhhhcCCcEEecC-CCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHH
Q 010684 375 -EVLKHPSIGGFLTH----CGWNSIVESLCSGVPMICWP-FTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVRE 448 (504)
Q Consensus 375 -~lL~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P-~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~ 448 (504)
+.+..+++ +|.. |-..++.||+++|+|+|+.- ..+ ....+ +.-..|..++. -+.++++++|.+
T Consensus 252 ~~~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv-~~~~~G~lv~~----~d~~~la~~i~~ 320 (359)
T PRK09922 252 QQKIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDII-KPGLNGELYTP----GNIDEFVGKLNK 320 (359)
T ss_pred HHHHhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHc-cCCCceEEECC----CCHHHHHHHHHH
Confidence 24555677 7653 33679999999999999875 322 22234 55456777763 488999999999
Q ss_pred HhcCch---HHHHHHHHHHHHHH
Q 010684 449 MMEGEK---GKQMRNKAMEWKGL 468 (504)
Q Consensus 449 vl~~~~---~~~~~~~a~~l~~~ 468 (504)
+++|++ .+.++++++++.+.
T Consensus 321 l~~~~~~~~~~~~~~~~~~~~~~ 343 (359)
T PRK09922 321 VISGEVKYQHDAIPNSIERFYEV 343 (359)
T ss_pred HHhCcccCCHHHHHHHHHHhhHH
Confidence 999985 24445555555443
No 78
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.66 E-value=0.00016 Score=71.63 Aligned_cols=80 Identities=13% Similarity=0.233 Sum_probs=58.4
Q ss_pred hccCcEEEeecch-HhhhcCCCcceEEecCC----chhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCC
Q 010684 361 AKEKGFVASWCPQ-EEVLKHPSIGGFLTHCG----WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDE 435 (504)
Q Consensus 361 ~~~nv~~~~~vpq-~~lL~~~~~~~~I~HGG----~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~ 435 (504)
+.+++.+.+...+ ..++..+++ +|..+. .+++.||+++|+|+|+... ..+...+ +. .|..++.
T Consensus 249 ~~~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~----~~~~e~~-~~--~g~~~~~--- 316 (365)
T cd03807 249 LEDKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATDV----GDNAELV-GD--TGFLVPP--- 316 (365)
T ss_pred CCceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcCC----CChHHHh-hc--CCEEeCC---
Confidence 3457777765543 468999998 886544 4799999999999998543 4455555 44 5666653
Q ss_pred CccHHHHHHHHHHHhcCc
Q 010684 436 DVIRNEVEKLVREMMEGE 453 (504)
Q Consensus 436 ~~~~~~l~~ai~~vl~~~ 453 (504)
-+.+++.++|.++++++
T Consensus 317 -~~~~~l~~~i~~l~~~~ 333 (365)
T cd03807 317 -GDPEALAEAIEALLADP 333 (365)
T ss_pred -CCHHHHHHHHHHHHhCh
Confidence 36899999999999987
No 79
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.63 E-value=1.9e-05 Score=77.57 Aligned_cols=81 Identities=10% Similarity=0.129 Sum_probs=58.5
Q ss_pred ccCcEEEeecchH-hhhcCCCcceEEec----CCchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCC
Q 010684 362 KEKGFVASWCPQE-EVLKHPSIGGFLTH----CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDED 436 (504)
Q Consensus 362 ~~nv~~~~~vpq~-~lL~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~ 436 (504)
.+++.+.++.+.. +++..+++ +|.- |..+++.||+++|+|+|+.... .....+ +..+.|...+.
T Consensus 245 ~~~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i-~~~~~g~~~~~---- 313 (353)
T cd03811 245 ADRVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREIL-EDGENGLLVPV---- 313 (353)
T ss_pred CccEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHh-cCCCceEEECC----
Confidence 4688888887754 68999998 6632 3456899999999999986543 455566 66678887773
Q ss_pred ccHHHH---HHHHHHHhcCc
Q 010684 437 VIRNEV---EKLVREMMEGE 453 (504)
Q Consensus 437 ~~~~~l---~~ai~~vl~~~ 453 (504)
-+.+.+ .+++.+++.++
T Consensus 314 ~~~~~~~~~~~~i~~~~~~~ 333 (353)
T cd03811 314 GDEAALAAAALALLDLLLDP 333 (353)
T ss_pred CCHHHHHHHHHHHHhccCCh
Confidence 456666 66666666666
No 80
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.62 E-value=7.7e-05 Score=74.30 Aligned_cols=130 Identities=18% Similarity=0.165 Sum_probs=79.9
Q ss_pred CeeEEEecCCcc-ccCHHHHHHHHHHHHhCCC--CEEEEEcCCCCCCCCCCCchHHH-----HhhccCcEEEeecch-Hh
Q 010684 305 KSVIYVNFGSFI-FMNKQQLIEVAMGLVNSNH--PFLWIIRPDLVTGETADLPAEFE-----VKAKEKGFVASWCPQ-EE 375 (504)
Q Consensus 305 ~~~V~vs~GS~~-~~~~~~~~~~~~a~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~nv~~~~~vpq-~~ 375 (504)
++.+++..|+.. ....+.+...+..+...+. +++++-.+. ....+. ..+.+++.+.++..+ .+
T Consensus 191 ~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~--------~~~~~~~~~~~~~~~~~v~~~g~~~~~~~ 262 (358)
T cd03812 191 DKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDGE--------LEEEIKKKVKELGLEDKVIFLGVRNDVPE 262 (358)
T ss_pred CCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeCCc--------hHHHHHHHHHhcCCCCcEEEecccCCHHH
Confidence 346666777764 3334444444444443333 333332222 111111 123578888888554 46
Q ss_pred hhcCCCcceEEec----CCchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhc
Q 010684 376 VLKHPSIGGFLTH----CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMME 451 (504)
Q Consensus 376 lL~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~ 451 (504)
++..+++ +|+- |-..++.||+++|+|+|+....+ ....+ +. +.|.... .-++++++++|.++++
T Consensus 263 ~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i-~~-~~~~~~~----~~~~~~~a~~i~~l~~ 330 (358)
T cd03812 263 LLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDL-TD-LVKFLSL----DESPEIWAEEILKLKS 330 (358)
T ss_pred HHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhh-cc-CccEEeC----CCCHHHHHHHHHHHHh
Confidence 8889998 6653 45679999999999999866544 33344 44 5555544 2358999999999999
Q ss_pred Cch
Q 010684 452 GEK 454 (504)
Q Consensus 452 ~~~ 454 (504)
|++
T Consensus 331 ~~~ 333 (358)
T cd03812 331 EDR 333 (358)
T ss_pred Ccc
Confidence 983
No 81
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.62 E-value=5.5e-05 Score=77.90 Aligned_cols=82 Identities=10% Similarity=0.176 Sum_probs=59.9
Q ss_pred hccCcEEEeecchHh---hhcCC----CcceEEecC---C-chhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEE
Q 010684 361 AKEKGFVASWCPQEE---VLKHP----SIGGFLTHC---G-WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGME 429 (504)
Q Consensus 361 ~~~nv~~~~~vpq~~---lL~~~----~~~~~I~HG---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~ 429 (504)
+.++|.+.+++++.+ +++.+ ++ ||... | ..++.||+++|+|+|+.-..+ +...+ +.-..|..
T Consensus 315 l~~~V~f~g~~~~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg----~~eiv-~~~~~G~l 387 (439)
T TIGR02472 315 LYGKVAYPKHHRPDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATDDGG----PRDII-ANCRNGLL 387 (439)
T ss_pred CCceEEecCCCCHHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeCCCC----cHHHh-cCCCcEEE
Confidence 457888888888765 46544 56 87643 3 459999999999999886532 34444 44356777
Q ss_pred ecCCCCCccHHHHHHHHHHHhcCc
Q 010684 430 INGDDEDVIRNEVEKLVREMMEGE 453 (504)
Q Consensus 430 l~~~~~~~~~~~l~~ai~~vl~~~ 453 (504)
++. -++++++++|.++++|+
T Consensus 388 v~~----~d~~~la~~i~~ll~~~ 407 (439)
T TIGR02472 388 VDV----LDLEAIASALEDALSDS 407 (439)
T ss_pred eCC----CCHHHHHHHHHHHHhCH
Confidence 663 47899999999999987
No 82
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.59 E-value=5.4e-05 Score=75.35 Aligned_cols=92 Identities=9% Similarity=0.103 Sum_probs=62.1
Q ss_pred ccCcEEEeecch-HhhhcCCCcceEEecC----CchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCC
Q 010684 362 KEKGFVASWCPQ-EEVLKHPSIGGFLTHC----GWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDED 436 (504)
Q Consensus 362 ~~nv~~~~~vpq-~~lL~~~~~~~~I~HG----G~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~ 436 (504)
.+++.+.++..+ ..+|..+++ +|.-. ..+++.||+.+|+|+|+. |...+...+ +. .|..+. .
T Consensus 244 ~~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i-~~--~g~~~~----~ 310 (360)
T cd04951 244 SNRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVV-GD--SGLIVP----I 310 (360)
T ss_pred CCcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEe-cC--CceEeC----C
Confidence 468888887764 468999998 66543 257899999999999974 444555556 44 344444 2
Q ss_pred ccHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHH
Q 010684 437 VIRNEVEKLVREMME-GEKGKQMRNKAMEWKGLA 469 (504)
Q Consensus 437 ~~~~~l~~ai~~vl~-~~~~~~~~~~a~~l~~~~ 469 (504)
-+.++++++|.++++ ++ .+++...+.++.+
T Consensus 311 ~~~~~~~~~i~~ll~~~~---~~~~~~~~~~~~~ 341 (360)
T cd04951 311 SDPEALANKIDEILKMSG---EERDIIGARRERI 341 (360)
T ss_pred CCHHHHHHHHHHHHhCCH---HHHHHHHHHHHHH
Confidence 468999999999995 44 4444443333333
No 83
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.57 E-value=2.6e-05 Score=77.99 Aligned_cols=130 Identities=15% Similarity=0.116 Sum_probs=78.7
Q ss_pred CeeEEEecCCcc---ccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHhh--ccCcEEEeecc---hHhh
Q 010684 305 KSVIYVNFGSFI---FMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKA--KEKGFVASWCP---QEEV 376 (504)
Q Consensus 305 ~~~V~vs~GS~~---~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~nv~~~~~vp---q~~l 376 (504)
++.|+|++=-.. ....+.+..+++++...+.++++...... .+. ..+...+.+.. .+++.+.+-++ ...+
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~-p~~-~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~L 278 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNAD-AGS-RIINEAIEEYVNEHPNFRLFKSLGQERYLSL 278 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCC-CCc-hHHHHHHHHHhcCCCCEEEECCCChHHHHHH
Confidence 458778775432 23456788999999888766666653221 000 00111111111 36788887544 4568
Q ss_pred hcCCCcceEEecCCchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhc
Q 010684 377 LKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMME 451 (504)
Q Consensus 377 L~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~ 451 (504)
++++++ +|+-++.|- .||...|+|.|.+- + |- |-.-.|-.+.. =..++++|.+++.++++
T Consensus 279 l~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~------R~-e~~~~g~nvl~--vg~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 279 LKNADA--VIGNSSSGI-IEAPSFGVPTINIG---T------RQ-KGRLRADSVID--VDPDKEEIVKAIEKLLD 338 (365)
T ss_pred HHhCCE--EEEcChhHH-HhhhhcCCCEEeec---C------Cc-hhhhhcCeEEE--eCCCHHHHHHHHHHHhC
Confidence 889999 998876555 99999999999774 1 22 21122222110 13468999999999553
No 84
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.51 E-value=0.00019 Score=72.46 Aligned_cols=144 Identities=11% Similarity=0.095 Sum_probs=82.2
Q ss_pred eeEEEecCCccccCHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCCCCCCchHHHH---hh---ccCcEEE-eecchH--
Q 010684 306 SVIYVNFGSFIFMNKQQLIEVAMGLVNS--NHPFLWIIRPDLVTGETADLPAEFEV---KA---KEKGFVA-SWCPQE-- 374 (504)
Q Consensus 306 ~~V~vs~GS~~~~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~---~~---~~nv~~~-~~vpq~-- 374 (504)
.++++..|.... .+-+..++++++.+ +.++++..++... ..+-+.+.+ .+ .+++... +++++.
T Consensus 201 ~~~i~~~Grl~~--~Kg~~~li~a~~~l~~~~~l~i~g~g~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 274 (388)
T TIGR02149 201 RPYILFVGRITR--QKGVPHLLDAVHYIPKDVQVVLCAGAPDT----PEVAEEVRQAVALLDRNRTGIIWINKMLPKEEL 274 (388)
T ss_pred ceEEEEEccccc--ccCHHHHHHHHHHHhhcCcEEEEeCCCCc----HHHHHHHHHHHHHhccccCceEEecCCCCHHHH
Confidence 345666676642 22345566666654 3455555443310 001111111 11 1235543 577754
Q ss_pred -hhhcCCCcceEEec----CCchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCcc----HHHHHHH
Q 010684 375 -EVLKHPSIGGFLTH----CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVI----RNEVEKL 445 (504)
Q Consensus 375 -~lL~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~----~~~l~~a 445 (504)
.++..+|+ +|.- |...++.||+++|+|+|+.... .....+ +.-+.|..++. ...+ .+++.++
T Consensus 275 ~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~----~~~e~i-~~~~~G~~~~~--~~~~~~~~~~~l~~~ 345 (388)
T TIGR02149 275 VELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASATG----GIPEVV-VDGETGFLVPP--DNSDADGFQAELAKA 345 (388)
T ss_pred HHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCCC----CHHHHh-hCCCceEEcCC--CCCcccchHHHHHHH
Confidence 47888998 7753 3345789999999999997643 344445 55467887774 3221 2899999
Q ss_pred HHHHhcCchH-HHHHHHHHH
Q 010684 446 VREMMEGEKG-KQMRNKAME 464 (504)
Q Consensus 446 i~~vl~~~~~-~~~~~~a~~ 464 (504)
|.++++|++. +++.+++++
T Consensus 346 i~~l~~~~~~~~~~~~~a~~ 365 (388)
T TIGR02149 346 INILLADPELAKKMGIAGRK 365 (388)
T ss_pred HHHHHhCHHHHHHHHHHHHH
Confidence 9999998732 344444444
No 85
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.49 E-value=0.00056 Score=68.12 Aligned_cols=124 Identities=14% Similarity=0.213 Sum_probs=71.4
Q ss_pred EEecCCccccCHHHHHHHHHHHHhCC--CCEEEEEcCCCCCCCCCCCchHHH--HhhccCcEEEeecchHh---hhcCCC
Q 010684 309 YVNFGSFIFMNKQQLIEVAMGLVNSN--HPFLWIIRPDLVTGETADLPAEFE--VKAKEKGFVASWCPQEE---VLKHPS 381 (504)
Q Consensus 309 ~vs~GS~~~~~~~~~~~~~~a~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~nv~~~~~vpq~~---lL~~~~ 381 (504)
++..|+... .+.+..+++++..+. .+++++-++... ..+..... ....++|.+.+++++.+ ++..++
T Consensus 196 i~~~G~~~~--~Kg~~~li~a~~~l~~~~~l~ivG~~~~~----~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad 269 (363)
T cd04955 196 YLLVGRIVP--ENNIDDLIEAFSKSNSGKKLVIVGNADHN----TPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAA 269 (363)
T ss_pred EEEEecccc--cCCHHHHHHHHHhhccCceEEEEcCCCCc----chHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCC
Confidence 345677642 222445566666554 444443332110 11111111 12357999999999864 666677
Q ss_pred cceEEecCCc-----hhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCc
Q 010684 382 IGGFLTHCGW-----NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE 453 (504)
Q Consensus 382 ~~~~I~HGG~-----gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~ 453 (504)
+ +|-+.-. +++.||+++|+|+|+....+ +...+ +. .|..... . +.++++|.++++++
T Consensus 270 ~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~-~~--~g~~~~~--~----~~l~~~i~~l~~~~ 331 (363)
T cd04955 270 L--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVL-GD--KAIYFKV--G----DDLASLLEELEADP 331 (363)
T ss_pred E--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceee-cC--CeeEecC--c----hHHHHHHHHHHhCH
Confidence 7 6655433 47999999999999876543 22223 33 2333332 1 12999999999987
No 86
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.48 E-value=0.00023 Score=72.78 Aligned_cols=81 Identities=19% Similarity=0.121 Sum_probs=56.4
Q ss_pred hccCcEEEeecchHh---hhcCCCcceEEecC---C-chhHHHhhhcCCcEEecCCCCCcchhhhhhhh---hcceeEEe
Q 010684 361 AKEKGFVASWCPQEE---VLKHPSIGGFLTHC---G-WNSIVESLCSGVPMICWPFTGDQPTNGRYVCN---EWGVGMEI 430 (504)
Q Consensus 361 ~~~nv~~~~~vpq~~---lL~~~~~~~~I~HG---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~---~~G~G~~l 430 (504)
+.++|.+.+++|+.+ +|..+++ +|+-. | .-++.||+++|+|+|+.-..+.-.+ .+ + .-+.|...
T Consensus 303 l~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~~~---iv-~~~~~g~~G~l~ 376 (419)
T cd03806 303 LEDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPLLD---IV-VPWDGGPTGFLA 376 (419)
T ss_pred CCCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCCchh---ee-eccCCCCceEEe
Confidence 457899999998764 7888888 66421 2 2488999999999998654332111 12 2 23456542
Q ss_pred cCCCCCccHHHHHHHHHHHhcCc
Q 010684 431 NGDDEDVIRNEVEKLVREMMEGE 453 (504)
Q Consensus 431 ~~~~~~~~~~~l~~ai~~vl~~~ 453 (504)
. ++++++++|.++++++
T Consensus 377 ----~--d~~~la~ai~~ll~~~ 393 (419)
T cd03806 377 ----S--TAEEYAEAIEKILSLS 393 (419)
T ss_pred ----C--CHHHHHHHHHHHHhCC
Confidence 2 6899999999999875
No 87
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.48 E-value=0.00014 Score=75.38 Aligned_cols=162 Identities=13% Similarity=0.097 Sum_probs=87.7
Q ss_pred ccccCCCCCeeEEEecCCccccCHHHHHHHHHHHH--hC--CCCEEEEEcCCCCCCCCCCCchHHHHhhc-cC---cEEE
Q 010684 297 QWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGLV--NS--NHPFLWIIRPDLVTGETADLPAEFEVKAK-EK---GFVA 368 (504)
Q Consensus 297 ~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~a~~--~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~n---v~~~ 368 (504)
+-+.-.+++++|-+-.||-.+--...+-.++++.+ .. ..+|+....... ..+.+.+.+. .+ +.+.
T Consensus 405 ~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~fvvp~a~~~-------~~~~i~~~~~~~~~~~~~ii 477 (608)
T PRK01021 405 EQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQLLVSSANPK-------YDHLILEVLQQEGCLHSHIV 477 (608)
T ss_pred HHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeEEEEecCchh-------hHHHHHHHHhhcCCCCeEEe
Confidence 33433345679999999875433444555666666 43 334544332211 0111222121 11 2222
Q ss_pred eecchHhhhcCCCcceEEecCCchhHHHhhhcCCcEEecCC-CCCcchhhhhhhh-------------hcceeEEecCCC
Q 010684 369 SWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPF-TGDQPTNGRYVCN-------------EWGVGMEINGDD 434 (504)
Q Consensus 369 ~~vpq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~-~~DQ~~na~rv~~-------------~~G~G~~l~~~~ 434 (504)
.--...+++..|++ .+.-.| ..+.|+..+|+|||++=. ..=-...+++++. ...+=..+-..+
T Consensus 478 ~~~~~~~~m~aaD~--aLaaSG-TaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ 554 (608)
T PRK01021 478 PSQFRYELMRECDC--ALAKCG-TIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGK 554 (608)
T ss_pred cCcchHHHHHhcCe--eeecCC-HHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCc
Confidence 10012579999998 777777 457899999999998532 2222345566532 001111111001
Q ss_pred CCccHHHHHHHHHHHhcCchH-HHHHHHHHHHHHHH
Q 010684 435 EDVIRNEVEKLVREMMEGEKG-KQMRNKAMEWKGLA 469 (504)
Q Consensus 435 ~~~~~~~l~~ai~~vl~~~~~-~~~~~~a~~l~~~~ 469 (504)
++.|+++|++++ ++|.|++. +++++..+++.+.+
T Consensus 555 ~~~tpe~La~~l-~lL~d~~~r~~~~~~l~~lr~~L 589 (608)
T PRK01021 555 KDFQPEEVAAAL-DILKTSQSKEKQKDACRDLYQAM 589 (608)
T ss_pred ccCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHh
Confidence 478999999997 88888732 45555555555544
No 88
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.46 E-value=0.0011 Score=66.76 Aligned_cols=92 Identities=13% Similarity=0.151 Sum_probs=62.8
Q ss_pred ccCcEEEeecch-HhhhcCCCcceEEe--c--CCchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCC
Q 010684 362 KEKGFVASWCPQ-EEVLKHPSIGGFLT--H--CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDED 436 (504)
Q Consensus 362 ~~nv~~~~~vpq-~~lL~~~~~~~~I~--H--GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~ 436 (504)
.+++.+.++..+ ..++..+|+ +|. + |-..++.||+++|+|+|+....+ +...+ +.-..|..++.
T Consensus 254 ~~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g----~~e~i-~~~~~g~~~~~---- 322 (374)
T TIGR03088 254 AHLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVGG----NPELV-QHGVTGALVPP---- 322 (374)
T ss_pred cceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCCC----cHHHh-cCCCceEEeCC----
Confidence 356666665443 468999998 763 2 44669999999999999976533 44444 45456776663
Q ss_pred ccHHHHHHHHHHHhcCchH-HHHHHHHHH
Q 010684 437 VIRNEVEKLVREMMEGEKG-KQMRNKAME 464 (504)
Q Consensus 437 ~~~~~l~~ai~~vl~~~~~-~~~~~~a~~ 464 (504)
-+.++++++|.+++++++- +.+.+++++
T Consensus 323 ~d~~~la~~i~~l~~~~~~~~~~~~~a~~ 351 (374)
T TIGR03088 323 GDAVALARALQPYVSDPAARRAHGAAGRA 351 (374)
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 4679999999999988732 334444443
No 89
>PLN02949 transferase, transferring glycosyl groups
Probab=98.41 E-value=0.0012 Score=68.11 Aligned_cols=99 Identities=15% Similarity=0.078 Sum_probs=63.9
Q ss_pred hccCcEEEeecchHh---hhcCCCcceEEe---cCCch-hHHHhhhcCCcEEecCCCCCcchhhhhhhhh-cc-eeEEec
Q 010684 361 AKEKGFVASWCPQEE---VLKHPSIGGFLT---HCGWN-SIVESLCSGVPMICWPFTGDQPTNGRYVCNE-WG-VGMEIN 431 (504)
Q Consensus 361 ~~~nv~~~~~vpq~~---lL~~~~~~~~I~---HGG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~-~G-~G~~l~ 431 (504)
+.++|.+.+++|+.+ +|..+++ +|+ +-|+| ++.||+++|+|+|+....+--.+. +.+. -| .|...
T Consensus 333 L~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~eI---V~~~~~g~tG~l~- 406 (463)
T PLN02949 333 LDGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMDI---VLDEDGQQTGFLA- 406 (463)
T ss_pred CCCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCccee---eecCCCCcccccC-
Confidence 457899999998664 7888888 773 23444 799999999999998764311111 1010 01 23221
Q ss_pred CCCCCccHHHHHHHHHHHhcC-ch-HHHHHHHHHHHHHHHH
Q 010684 432 GDDEDVIRNEVEKLVREMMEG-EK-GKQMRNKAMEWKGLAE 470 (504)
Q Consensus 432 ~~~~~~~~~~l~~ai~~vl~~-~~-~~~~~~~a~~l~~~~~ 470 (504)
-+.++++++|.+++++ ++ .+.|.+++++..+.+.
T Consensus 407 -----~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~FS 442 (463)
T PLN02949 407 -----TTVEEYADAILEVLRMRETERLEIAAAARKRANRFS 442 (463)
T ss_pred -----CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Confidence 1689999999999984 32 2456667766655543
No 90
>PLN02275 transferase, transferring glycosyl groups
Probab=98.39 E-value=0.0006 Score=68.56 Aligned_cols=75 Identities=16% Similarity=0.319 Sum_probs=53.3
Q ss_pred cCcEEEe-ecchHh---hhcCCCcceEEe-c-----CC-chhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEec
Q 010684 363 EKGFVAS-WCPQEE---VLKHPSIGGFLT-H-----CG-WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEIN 431 (504)
Q Consensus 363 ~nv~~~~-~vpq~~---lL~~~~~~~~I~-H-----GG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~ 431 (504)
+|+.+.. |+|+.+ +|+.+|+ +|. + -| -+++.||+++|+|+|+.... .+...+ +.-+.|..++
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~g----g~~eiv-~~g~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIGELV-KDGKNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecCC----ChHHHc-cCCCCeEEEC
Confidence 4566655 788765 5889999 763 1 12 35799999999999997542 244555 6656788765
Q ss_pred CCCCCccHHHHHHHHHHHh
Q 010684 432 GDDEDVIRNEVEKLVREMM 450 (504)
Q Consensus 432 ~~~~~~~~~~l~~ai~~vl 450 (504)
++++++++|.++|
T Consensus 359 ------~~~~la~~i~~l~ 371 (371)
T PLN02275 359 ------SSSELADQLLELL 371 (371)
T ss_pred ------CHHHHHHHHHHhC
Confidence 3789999998875
No 91
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.39 E-value=0.00075 Score=68.86 Aligned_cols=73 Identities=11% Similarity=0.178 Sum_probs=52.7
Q ss_pred EEeecchHhhhcCCCcceEEec----CCchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHH
Q 010684 367 VASWCPQEEVLKHPSIGGFLTH----CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEV 442 (504)
Q Consensus 367 ~~~~vpq~~lL~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l 442 (504)
+.++.+..+++...++ ||.- |=..++.||+++|+|+|+.-..+ + ..+ ...+-|...+ +.+++
T Consensus 288 f~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v-~~~~ng~~~~------~~~~~ 353 (462)
T PLN02846 288 YPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFF-KQFPNCRTYD------DGKGF 353 (462)
T ss_pred ECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-cee-ecCCceEecC------CHHHH
Confidence 4456666679988988 9877 44678999999999999987543 1 223 3334443333 47899
Q ss_pred HHHHHHHhcCc
Q 010684 443 EKLVREMMEGE 453 (504)
Q Consensus 443 ~~ai~~vl~~~ 453 (504)
+++|.++|+++
T Consensus 354 a~ai~~~l~~~ 364 (462)
T PLN02846 354 VRATLKALAEE 364 (462)
T ss_pred HHHHHHHHccC
Confidence 99999999865
No 92
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.38 E-value=5.9e-06 Score=81.71 Aligned_cols=131 Identities=13% Similarity=0.123 Sum_probs=75.1
Q ss_pred CCCeeEEEecCCccccC-H---HHHHHHHHHHHhC-CCCEEEEEcCCCCCCCCCCCchHHHH---hhccCcEEEeecc--
Q 010684 303 EPKSVIYVNFGSFIFMN-K---QQLIEVAMGLVNS-NHPFLWIIRPDLVTGETADLPAEFEV---KAKEKGFVASWCP-- 372 (504)
Q Consensus 303 ~~~~~V~vs~GS~~~~~-~---~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~nv~~~~~vp-- 372 (504)
..++.|++++=...... + ..+..+++++.+. +.++||.+.+... ......+ +. +|+.+..-++
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~------~~~~i~~~l~~~-~~v~~~~~l~~~ 250 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPR------GSDIIIEKLKKY-DNVRLIEPLGYE 250 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HH------HHHHHHHHHTT--TTEEEE----HH
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCch------HHHHHHHHhccc-CCEEEECCCCHH
Confidence 36789999985544434 3 3455566666655 6789998874310 0011122 23 5898887665
Q ss_pred -hHhhhcCCCcceEEecCCchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhc
Q 010684 373 -QEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMME 451 (504)
Q Consensus 373 -q~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~ 451 (504)
...+|+++++ +|+-.| |-.-||.++|+|.|.+ .|+-..=.-+ + .|..+- - ..+.++|.++++++++
T Consensus 251 ~~l~ll~~a~~--vvgdSs-GI~eEa~~lg~P~v~i---R~~geRqe~r-~-~~~nvl--v---~~~~~~I~~ai~~~l~ 317 (346)
T PF02350_consen 251 EYLSLLKNADL--VVGDSS-GIQEEAPSLGKPVVNI---RDSGERQEGR-E-RGSNVL--V---GTDPEAIIQAIEKALS 317 (346)
T ss_dssp HHHHHHHHESE--EEESSH-HHHHHGGGGT--EEEC---SSS-S-HHHH-H-TTSEEE--E---TSSHHHHHHHHHHHHH
T ss_pred HHHHHHhcceE--EEEcCc-cHHHHHHHhCCeEEEe---cCCCCCHHHH-h-hcceEE--e---CCCHHHHHHHHHHHHh
Confidence 4568889999 999999 4444999999999999 2222222222 1 244433 2 2679999999999998
Q ss_pred Cc
Q 010684 452 GE 453 (504)
Q Consensus 452 ~~ 453 (504)
+.
T Consensus 318 ~~ 319 (346)
T PF02350_consen 318 DK 319 (346)
T ss_dssp -H
T ss_pred Ch
Confidence 74
No 93
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.32 E-value=0.00036 Score=70.18 Aligned_cols=109 Identities=16% Similarity=0.168 Sum_probs=67.4
Q ss_pred ccCcEEEeec--chH---hhhcCCCcceEEecC---C-chhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecC
Q 010684 362 KEKGFVASWC--PQE---EVLKHPSIGGFLTHC---G-WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEING 432 (504)
Q Consensus 362 ~~nv~~~~~v--pq~---~lL~~~~~~~~I~HG---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~ 432 (504)
.+++.+.++. ++. .+++.+++ +|.-. | ..++.||+++|+|+|+....+ ....+ +.-..|...+
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i-~~~~~g~~~~- 322 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQI-EDGETGFLVD- 322 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhc-ccCCceEEeC-
Confidence 4678888876 432 47888888 87543 2 459999999999999876432 23334 4445566444
Q ss_pred CCCCccHHHHHHHHHHHhcCchH-HHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 010684 433 DDEDVIRNEVEKLVREMMEGEKG-KQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEI 490 (504)
Q Consensus 433 ~~~~~~~~~l~~ai~~vl~~~~~-~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 490 (504)
+.++++.+|.+++++++- +.+.+++++.... .=+.+..++++++.+
T Consensus 323 -----~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~~~-------~~s~~~~~~~~~~~~ 369 (372)
T cd03792 323 -----TVEEAAVRILYLLRDPELRRKMGANAREHVRE-------NFLITRHLKDYLYLI 369 (372)
T ss_pred -----CcHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-------HcCHHHHHHHHHHHH
Confidence 356788899999988732 3344444443211 114455556655544
No 94
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.31 E-value=0.00014 Score=72.51 Aligned_cols=124 Identities=15% Similarity=0.168 Sum_probs=84.9
Q ss_pred EEecCCccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHhhccCcEEEeecchH---hhhcCCCcceE
Q 010684 309 YVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQE---EVLKHPSIGGF 385 (504)
Q Consensus 309 ~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~---~lL~~~~~~~~ 385 (504)
++..|+.. ..+....++++++..+.+++++-.+. ....+.+...+||.+.+++|+. .++..+++ +
T Consensus 198 il~~G~~~--~~K~~~~li~a~~~~~~~l~ivG~g~--------~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~--~ 265 (351)
T cd03804 198 YLSVGRLV--PYKRIDLAIEAFNKLGKRLVVIGDGP--------ELDRLRAKAGPNVTFLGRVSDEELRDLYARARA--F 265 (351)
T ss_pred EEEEEcCc--cccChHHHHHHHHHCCCcEEEEECCh--------hHHHHHhhcCCCEEEecCCCHHHHHHHHHhCCE--E
Confidence 44556654 22335667778887777766655433 1123333557899999999975 47888998 6
Q ss_pred Ee--cCCc-hhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCc
Q 010684 386 LT--HCGW-NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE 453 (504)
Q Consensus 386 I~--HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~ 453 (504)
|. .-|. .++.||+++|+|+|+....+ ....+ +.-+.|..++. -++++++++|.++++|+
T Consensus 266 v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i-~~~~~G~~~~~----~~~~~la~~i~~l~~~~ 327 (351)
T cd03804 266 LFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETV-IDGVTGILFEE----QTVESLAAAVERFEKNE 327 (351)
T ss_pred EECCcCCCCchHHHHHHcCCCEEEeCCCC----Cccee-eCCCCEEEeCC----CCHHHHHHHHHHHHhCc
Confidence 63 3343 46789999999999986533 33335 45467887763 46899999999999987
No 95
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.31 E-value=0.0001 Score=73.32 Aligned_cols=88 Identities=10% Similarity=0.200 Sum_probs=61.0
Q ss_pred hccCcEEEeecchH---hhhcCCCcceEEec----CCchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCC
Q 010684 361 AKEKGFVASWCPQE---EVLKHPSIGGFLTH----CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGD 433 (504)
Q Consensus 361 ~~~nv~~~~~vpq~---~lL~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~ 433 (504)
..+++.+.+++|+. .++..+++ +|.- |..+++.||+++|+|+|+....+ ....+ .. .|..+..
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~-~~--~~~~~~~- 320 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVA-GD--AALYFDP- 320 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCCC----cccee-cC--ceeeeCC-
Confidence 46789999999876 47888888 5533 34568999999999999865522 22223 33 3444553
Q ss_pred CCCccHHHHHHHHHHHhcCchHHHHHHHHHH
Q 010684 434 DEDVIRNEVEKLVREMMEGEKGKQMRNKAME 464 (504)
Q Consensus 434 ~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~ 464 (504)
-+.++++++|.++++|+ ..+.+..+
T Consensus 321 ---~~~~~~~~~i~~l~~~~---~~~~~~~~ 345 (365)
T cd03809 321 ---LDPEALAAAIERLLEDP---ALREELRE 345 (365)
T ss_pred ---CCHHHHHHHHHHHhcCH---HHHHHHHH
Confidence 37899999999999988 44444333
No 96
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.30 E-value=3.9e-06 Score=69.28 Aligned_cols=118 Identities=16% Similarity=0.182 Sum_probs=79.9
Q ss_pred eeEEEecCCccccCH---HHHHHHHHHHHhCCC-CEEEEEcCCCCCCCCCCCchHHHH-hhccCcEE--Eeecch-Hhhh
Q 010684 306 SVIYVNFGSFIFMNK---QQLIEVAMGLVNSNH-PFLWIIRPDLVTGETADLPAEFEV-KAKEKGFV--ASWCPQ-EEVL 377 (504)
Q Consensus 306 ~~V~vs~GS~~~~~~---~~~~~~~~a~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~-~~~~nv~~--~~~vpq-~~lL 377 (504)
..+|||-||.....- -......+.+.+.|. +.|..+|.+.. ..+..... +.-+...+ .+|-|- .+..
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~-----~~~d~~~~~~k~~gl~id~y~f~psl~e~I 78 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQP-----FFGDPIDLIRKNGGLTIDGYDFSPSLTEDI 78 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCcc-----CCCCHHHhhcccCCeEEEEEecCccHHHHH
Confidence 489999999863221 113457777788885 77888876521 12222111 11123333 456775 5677
Q ss_pred cCCCcceEEecCCchhHHHhhhcCCcEEecCC----CCCcchhhhhhhhhcceeEEec
Q 010684 378 KHPSIGGFLTHCGWNSIVESLCSGVPMICWPF----TGDQPTNGRYVCNEWGVGMEIN 431 (504)
Q Consensus 378 ~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~----~~DQ~~na~rv~~~~G~G~~l~ 431 (504)
+.+++ ||.|+|+||+.|.|+.|+|.|+++- -.+|-..|..+ ++.|.=..-.
T Consensus 79 ~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL-~~egyL~~C~ 133 (170)
T KOG3349|consen 79 RSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQL-AEEGYLYYCT 133 (170)
T ss_pred hhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHH-HhcCcEEEee
Confidence 77888 9999999999999999999999994 46899999999 4546544433
No 97
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.27 E-value=0.0062 Score=65.55 Aligned_cols=94 Identities=21% Similarity=0.302 Sum_probs=65.7
Q ss_pred hccCcEEEeecchH-hhhcCCCcceEEe---cCC-chhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCC
Q 010684 361 AKEKGFVASWCPQE-EVLKHPSIGGFLT---HCG-WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDE 435 (504)
Q Consensus 361 ~~~nv~~~~~vpq~-~lL~~~~~~~~I~---HGG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~ 435 (504)
+.++|.+.+|.+.. .+|..+++ +|. +.| .+++.||+.+|+|+|+.... .....+ +.-..|..++. .
T Consensus 572 L~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV-~dg~~GlLv~~--~ 642 (694)
T PRK15179 572 MGERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAV-QEGVTGLTLPA--D 642 (694)
T ss_pred CCCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHc-cCCCCEEEeCC--C
Confidence 34789999998754 58889998 765 455 56899999999999997653 233445 55346888875 5
Q ss_pred CccHHHHHHHHHHHhc----CchHHHHHHHHHHHH
Q 010684 436 DVIRNEVEKLVREMME----GEKGKQMRNKAMEWK 466 (504)
Q Consensus 436 ~~~~~~l~~ai~~vl~----~~~~~~~~~~a~~l~ 466 (504)
+.+++++++++.+++. ++ .+++++++..
T Consensus 643 d~~~~~La~aL~~ll~~l~~~~---~l~~~ar~~a 674 (694)
T PRK15179 643 TVTAPDVAEALARIHDMCAADP---GIARKAADWA 674 (694)
T ss_pred CCChHHHHHHHHHHHhChhccH---HHHHHHHHHH
Confidence 5666677777766654 44 6666665544
No 98
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.26 E-value=0.00091 Score=69.45 Aligned_cols=134 Identities=12% Similarity=0.121 Sum_probs=74.7
Q ss_pred CeeEEEecCCcc-ccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchH---HHHhhccCcEE-EeecchH--hhh
Q 010684 305 KSVIYVNFGSFI-FMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAE---FEVKAKEKGFV-ASWCPQE--EVL 377 (504)
Q Consensus 305 ~~~V~vs~GS~~-~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~nv~~-~~~vpq~--~lL 377 (504)
+.++++..|... +...+.+...+.-+.+.+.+++++-++.. ...+. +.++.+.++.+ .+|-... .++
T Consensus 281 ~~~~i~~vGRl~~~KG~~~li~a~~~l~~~~~~lvivG~g~~------~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~ 354 (466)
T PRK00654 281 DAPLFAMVSRLTEQKGLDLVLEALPELLEQGGQLVLLGTGDP------ELEEAFRALAARYPGKVGVQIGYDEALAHRIY 354 (466)
T ss_pred CCcEEEEeeccccccChHHHHHHHHHHHhcCCEEEEEecCcH------HHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHH
Confidence 345666667764 33333333333333333566666543220 01111 22344566654 4553232 478
Q ss_pred cCCCcceEEe---cCCch-hHHHhhhcCCcEEecCCCC--CcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhc
Q 010684 378 KHPSIGGFLT---HCGWN-SIVESLCSGVPMICWPFTG--DQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMME 451 (504)
Q Consensus 378 ~~~~~~~~I~---HGG~g-s~~eal~~GvP~v~~P~~~--DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~ 451 (504)
..+|+ +|. +-|.| +.+||+++|+|.|+.-..+ |.-.....- ..-+.|..++. -++++++++|.++++
T Consensus 355 ~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~-~~~~~G~lv~~----~d~~~la~~i~~~l~ 427 (466)
T PRK00654 355 AGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPE-DGEATGFVFDD----FNAEDLLRALRRALE 427 (466)
T ss_pred hhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCC-CCCCceEEeCC----CCHHHHHHHHHHHHH
Confidence 88998 774 34554 8899999999999875532 322111111 12267887773 578999999999886
No 99
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.26 E-value=0.00062 Score=67.43 Aligned_cols=163 Identities=17% Similarity=0.098 Sum_probs=91.2
Q ss_pred CCeeEEEecCCccccCHHHHHHHHHHHHh---C--CCCEEEEEcCCCCCCCCCCCchHHHH---hhccCcEEEee-cchH
Q 010684 304 PKSVIYVNFGSFIFMNKQQLIEVAMGLVN---S--NHPFLWIIRPDLVTGETADLPAEFEV---KAKEKGFVASW-CPQE 374 (504)
Q Consensus 304 ~~~~V~vs~GS~~~~~~~~~~~~~~a~~~---~--~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~nv~~~~~-vpq~ 374 (504)
++++|-+-.||-.+--...+-.++++++. . +.+|++...... ...-+.+ ....++.+.-. -.-.
T Consensus 183 ~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~~ 255 (373)
T PF02684_consen 183 DKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPEV-------HEELIEEILAEYPPDVSIVIIEGESY 255 (373)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHH-------HHHHHHHHHHhhCCCCeEEEcCCchH
Confidence 66799999998753223334444555433 2 345555443221 1111111 11233333322 2345
Q ss_pred hhhcCCCcceEEecCCchhHHHhhhcCCcEEecCCC-CCcchhhhhhhh--hcc---------eeEEecCCCCCccHHHH
Q 010684 375 EVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFT-GDQPTNGRYVCN--EWG---------VGMEINGDDEDVIRNEV 442 (504)
Q Consensus 375 ~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~-~DQ~~na~rv~~--~~G---------~G~~l~~~~~~~~~~~l 442 (504)
++|..+++ .+.-.| ..+.|+..+|+|||++=-. .=....|++++. ..| +-..+- ++..|++.|
T Consensus 256 ~~m~~ad~--al~~SG-TaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEli--Q~~~~~~~i 330 (373)
T PF02684_consen 256 DAMAAADA--ALAASG-TATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELI--QEDATPENI 330 (373)
T ss_pred HHHHhCcc--hhhcCC-HHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhh--cccCCHHHH
Confidence 68889998 666666 5688999999999987432 223445555532 111 111111 268999999
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHHHhCCCCChHH
Q 010684 443 EKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSL 481 (504)
Q Consensus 443 ~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~ 481 (504)
.+++.++|+|+ ..++..+...+.+++..+.|.++..
T Consensus 331 ~~~~~~ll~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (373)
T PF02684_consen 331 AAELLELLENP---EKRKKQKELFREIRQLLGPGASSRA 366 (373)
T ss_pred HHHHHHHhcCH---HHHHHHHHHHHHHHHhhhhccCCHH
Confidence 99999999998 4455555555555554444555443
No 100
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.25 E-value=0.0029 Score=62.29 Aligned_cols=324 Identities=15% Similarity=0.170 Sum_probs=181.5
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEe-CccchHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCCCCcc
Q 010684 12 HAVCIPSPFQSHIKAMLKLAKLLHHK--GFHITFVN-TEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTAQ 88 (504)
Q Consensus 12 ~il~~~~~~~GHi~p~l~LA~~L~~~--Gh~Vt~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~ 88 (504)
-.+.+=..|.|-++-...|.++|.++ ++.|++-| ++--.+.+.+..++ .+...-+|-++
T Consensus 50 p~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~-------~v~h~YlP~D~----------- 111 (419)
T COG1519 50 PLVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGD-------SVIHQYLPLDL----------- 111 (419)
T ss_pred CeEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCC-------CeEEEecCcCc-----------
Confidence 35555666889999999999999999 88888766 44455555554211 12322333111
Q ss_pred cHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEE-EcC-CcchHHHHHHHcCCCeEEEccccHHHHHhHhhhhh
Q 010684 89 DAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCII-SDG-FLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQT 166 (504)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI-~D~-~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 166 (504)
...+..+++.+ +||++| ++. +.+..+.-+++.|+|.+.+.-=
T Consensus 112 --------------~~~v~rFl~~~---------~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaR------------- 155 (419)
T COG1519 112 --------------PIAVRRFLRKW---------RPKLLIIMETELWPNLINELKRRGIPLVLVNAR------------- 155 (419)
T ss_pred --------------hHHHHHHHHhc---------CCCEEEEEeccccHHHHHHHHHcCCCEEEEeee-------------
Confidence 23445566666 777766 444 3446777789999999996320
Q ss_pred hhhcCCCCccccccccchhhhhcccccccCCCCCCCCCCCCCcccccCCCchhHHHHHHHHh-hhcccCcEEEEcChhhh
Q 010684 167 FKEKGLFPVKVLADKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEAT-ENASKASAIIIHTFDAL 245 (504)
Q Consensus 167 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~s~~~l 245 (504)
+... + ..++ ..+.... ...+..++++.-+-..-
T Consensus 156 ------LS~r-----S-------------~~~y----------------------~k~~~~~~~~~~~i~li~aQse~D~ 189 (419)
T COG1519 156 ------LSDR-----S-------------FARY----------------------AKLKFLARLLFKNIDLILAQSEEDA 189 (419)
T ss_pred ------echh-----h-------------hHHH----------------------HHHHHHHHHHHHhcceeeecCHHHH
Confidence 0000 0 0000 0011111 22345566666664322
Q ss_pred hHHHHHHHhhh-CCCceeeeCccccccccchhccccccccCCCccccchhhhccccCCCCCeeEEEecCCccccCHHHHH
Q 010684 246 EQQVLNALSFM-FPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLI 324 (504)
Q Consensus 246 e~~~~~~~~~~-~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~ 324 (504)
+-- ... .++ +...|.+-.+....+. . ...-..+.+.+... + .+.|..+|. .-+.+...
T Consensus 190 ~Rf-----~~LGa~~-v~v~GNlKfd~~~~~~----------~-~~~~~~~r~~l~~~--r-~v~iaaSTH-~GEeei~l 248 (419)
T COG1519 190 QRF-----RSLGAKP-VVVTGNLKFDIEPPPQ----------L-AAELAALRRQLGGH--R-PVWVAASTH-EGEEEIIL 248 (419)
T ss_pred HHH-----HhcCCcc-eEEecceeecCCCChh----------h-HHHHHHHHHhcCCC--C-ceEEEecCC-CchHHHHH
Confidence 211 222 233 7888877554322111 0 00112233444331 2 445544553 23344455
Q ss_pred HHHHHHHhCC--CCEEEEEcCCCCCCCCCCCch--HHHH---------------hhccCcEEEeecchH-hhhcCCCc--
Q 010684 325 EVAMGLVNSN--HPFLWIIRPDLVTGETADLPA--EFEV---------------KAKEKGFVASWCPQE-EVLKHPSI-- 382 (504)
Q Consensus 325 ~~~~a~~~~~--~~~i~~~~~~~~~~~~~~~~~--~~~~---------------~~~~nv~~~~~vpq~-~lL~~~~~-- 382 (504)
....++.+.. ...||+=.-. +.++. ++.. ....+|.+.+-+-.+ .++.-+++
T Consensus 249 ~~~~~l~~~~~~~llIlVPRHp------ERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAF 322 (419)
T COG1519 249 DAHQALKKQFPNLLLILVPRHP------ERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAF 322 (419)
T ss_pred HHHHHHHhhCCCceEEEecCCh------hhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEE
Confidence 5555555443 4456653321 11110 0000 012367777766544 45555555
Q ss_pred --ceEEecCCchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCchH-HHHH
Q 010684 383 --GGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKG-KQMR 459 (504)
Q Consensus 383 --~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~~~-~~~~ 459 (504)
+-++-+||+| ..|.+++|+|+|.=|+..-|.+.++++ .+.|.|+.++ + ++.|.+++..+++|++. +.|.
T Consensus 323 VGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~l-~~~ga~~~v~---~---~~~l~~~v~~l~~~~~~r~~~~ 394 (419)
T COG1519 323 VGGSLVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDIAERL-LQAGAGLQVE---D---ADLLAKAVELLLADEDKREAYG 394 (419)
T ss_pred ECCcccCCCCCC-hhhHHHcCCCEEeCCccccHHHHHHHH-HhcCCeEEEC---C---HHHHHHHHHHhcCCHHHHHHHH
Confidence 1134588987 689999999999999999999999999 7889999998 2 78899999888887744 4455
Q ss_pred HHHHHHHHHHH
Q 010684 460 NKAMEWKGLAE 470 (504)
Q Consensus 460 ~~a~~l~~~~~ 470 (504)
+++.++-+..+
T Consensus 395 ~~~~~~v~~~~ 405 (419)
T COG1519 395 RAGLEFLAQNR 405 (419)
T ss_pred HHHHHHHHHhh
Confidence 55555444433
No 101
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.25 E-value=0.0019 Score=67.30 Aligned_cols=134 Identities=12% Similarity=0.088 Sum_probs=75.6
Q ss_pred CeeEEEecCCcc-ccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHH---HHhhccCcEEEeecchH---hhh
Q 010684 305 KSVIYVNFGSFI-FMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEF---EVKAKEKGFVASWCPQE---EVL 377 (504)
Q Consensus 305 ~~~V~vs~GS~~-~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~nv~~~~~vpq~---~lL 377 (504)
+.++++..|... ....+.+...+..+.+.+.+++++-.+.. .....+ ..+.++|+.+..-.++. .++
T Consensus 295 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 368 (476)
T cd03791 295 DAPLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGDP------EYEEALRELAARYPGRVAVLIGYDEALAHLIY 368 (476)
T ss_pred CCCEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCCH------HHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Confidence 345666667764 33344444444444444555555443320 011111 12335677765433433 377
Q ss_pred cCCCcceEEec---CCc-hhHHHhhhcCCcEEecCCCC--CcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhc
Q 010684 378 KHPSIGGFLTH---CGW-NSIVESLCSGVPMICWPFTG--DQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMME 451 (504)
Q Consensus 378 ~~~~~~~~I~H---GG~-gs~~eal~~GvP~v~~P~~~--DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~ 451 (504)
..+++ +|.- -|. .+.+||+++|+|+|+....+ |.-...... ..-|.|..++. -+++++.++|.++++
T Consensus 369 ~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~-~~~~~G~~~~~----~~~~~l~~~i~~~l~ 441 (476)
T cd03791 369 AGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNED-TGEGTGFVFEG----YNADALLAALRRALA 441 (476)
T ss_pred HhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCC-CCCCCeEEeCC----CCHHHHHHHHHHHHH
Confidence 88888 7743 222 47899999999999876543 222222111 12357888773 468999999999886
No 102
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.23 E-value=0.00014 Score=73.83 Aligned_cols=91 Identities=10% Similarity=0.124 Sum_probs=63.4
Q ss_pred ccCcEEEeecchH-hhhcCCCcceEE--ec--CCch-hHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCC
Q 010684 362 KEKGFVASWCPQE-EVLKHPSIGGFL--TH--CGWN-SIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDE 435 (504)
Q Consensus 362 ~~nv~~~~~vpq~-~lL~~~~~~~~I--~H--GG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~ 435 (504)
.++|.+.+++++. .++..+++ +| .+ .|.+ .+.||+.+|+|+|+.+...+.. . +.-|.|..+.
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~-~~~~~g~lv~---- 346 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----D-ALPGAELLVA---- 346 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----c-ccCCcceEeC----
Confidence 4689999999864 58889998 66 22 3543 6999999999999988643221 1 2235665543
Q ss_pred CccHHHHHHHHHHHhcCchH-HHHHHHHHHH
Q 010684 436 DVIRNEVEKLVREMMEGEKG-KQMRNKAMEW 465 (504)
Q Consensus 436 ~~~~~~l~~ai~~vl~~~~~-~~~~~~a~~l 465 (504)
-++++++++|.++++|++- +.+.+++++.
T Consensus 347 -~~~~~la~ai~~ll~~~~~~~~~~~~ar~~ 376 (397)
T TIGR03087 347 -ADPADFAAAILALLANPAEREELGQAARRR 376 (397)
T ss_pred -CCHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 3689999999999998842 3444555443
No 103
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.20 E-value=0.012 Score=63.65 Aligned_cols=92 Identities=12% Similarity=0.136 Sum_probs=57.4
Q ss_pred ccCcEEEeec-ch---HhhhcC-CC-cceEEec---CC-chhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEec
Q 010684 362 KEKGFVASWC-PQ---EEVLKH-PS-IGGFLTH---CG-WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEIN 431 (504)
Q Consensus 362 ~~nv~~~~~v-pq---~~lL~~-~~-~~~~I~H---GG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~ 431 (504)
.++|.+.++. +. .+++.+ ++ .++||.= =| .-++.||+++|+|+|+.-.. .....| +.-.-|..++
T Consensus 618 ~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~G----G~~EiV-~dg~tGfLVd 692 (784)
T TIGR02470 618 HGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFG----GPLEII-QDGVSGFHID 692 (784)
T ss_pred CCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCC----CHHHHh-cCCCcEEEeC
Confidence 4788887764 32 235543 22 1227742 23 35999999999999986553 344455 4535688877
Q ss_pred CCCCCccHHHHHHHHHHHh----cCchH-HHHHHHH
Q 010684 432 GDDEDVIRNEVEKLVREMM----EGEKG-KQMRNKA 462 (504)
Q Consensus 432 ~~~~~~~~~~l~~ai~~vl----~~~~~-~~~~~~a 462 (504)
. -++++++++|.+++ +|++. +.+.+++
T Consensus 693 p----~D~eaLA~aL~~ll~kll~dp~~~~~ms~~a 724 (784)
T TIGR02470 693 P----YHGEEAAEKIVDFFEKCDEDPSYWQKISQGG 724 (784)
T ss_pred C----CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4 46789999998876 56632 3344443
No 104
>PLN02501 digalactosyldiacylglycerol synthase
Probab=98.13 E-value=0.0036 Score=65.83 Aligned_cols=76 Identities=12% Similarity=0.123 Sum_probs=53.5
Q ss_pred CcEEEeecchH-hhhcCCCcceEEec---CC-chhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCcc
Q 010684 364 KGFVASWCPQE-EVLKHPSIGGFLTH---CG-WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVI 438 (504)
Q Consensus 364 nv~~~~~vpq~-~lL~~~~~~~~I~H---GG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~ 438 (504)
++.+.++.++. ++++.+++ ||.- =| ..++.||+++|+|+|+.-..+... + ...+-|. +. -+
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V-~~g~nGl-l~-----~D 667 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----F-RSFPNCL-TY-----KT 667 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----E-eecCCeE-ec-----CC
Confidence 35666676655 48988998 8763 23 468999999999999988765321 3 2322332 22 25
Q ss_pred HHHHHHHHHHHhcCc
Q 010684 439 RNEVEKLVREMMEGE 453 (504)
Q Consensus 439 ~~~l~~ai~~vl~~~ 453 (504)
.++++++|.++|+++
T Consensus 668 ~EafAeAI~~LLsd~ 682 (794)
T PLN02501 668 SEDFVAKVKEALANE 682 (794)
T ss_pred HHHHHHHHHHHHhCc
Confidence 899999999999987
No 105
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.12 E-value=0.00081 Score=65.50 Aligned_cols=139 Identities=17% Similarity=0.172 Sum_probs=87.8
Q ss_pred CCeeEEEecCCccccCHHHHHHHHH----HHHhCCCCEEEEEcCCCCCCCCCCCchHHH-Hhhc--cCcEEEe---ecch
Q 010684 304 PKSVIYVNFGSFIFMNKQQLIEVAM----GLVNSNHPFLWIIRPDLVTGETADLPAEFE-VKAK--EKGFVAS---WCPQ 373 (504)
Q Consensus 304 ~~~~V~vs~GS~~~~~~~~~~~~~~----a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~--~nv~~~~---~vpq 373 (504)
.+..|.+|+=-..... +.+..+.+ .++.. ..+..++..... ... ..+. .++. +|+++.+ |.+.
T Consensus 203 ~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~-~~~~viyp~H~~----~~v-~e~~~~~L~~~~~v~li~pl~~~~f 275 (383)
T COG0381 203 DKKYILVTAHRRENVG-EPLEEICEALREIAEEY-PDVIVIYPVHPR----PRV-RELVLKRLKNVERVKLIDPLGYLDF 275 (383)
T ss_pred cCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhC-CCceEEEeCCCC----hhh-hHHHHHHhCCCCcEEEeCCcchHHH
Confidence 4458888764433333 33444444 44444 233444432210 001 1111 3344 3577754 6778
Q ss_pred HhhhcCCCcceEEecCCchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCc
Q 010684 374 EEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE 453 (504)
Q Consensus 374 ~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~ 453 (504)
..++.++-+ ++|-.| |-.-||-..|+|.+++=..-+++. ++ +. |.-+-+. .+.+.|.+++.++++++
T Consensus 276 ~~L~~~a~~--iltDSG-giqEEAp~lg~Pvl~lR~~TERPE---~v-~a-gt~~lvg-----~~~~~i~~~~~~ll~~~ 342 (383)
T COG0381 276 HNLMKNAFL--ILTDSG-GIQEEAPSLGKPVLVLRDTTERPE---GV-EA-GTNILVG-----TDEENILDAATELLEDE 342 (383)
T ss_pred HHHHHhceE--EEecCC-chhhhHHhcCCcEEeeccCCCCcc---ce-ec-CceEEeC-----ccHHHHHHHHHHHhhCh
Confidence 889999988 999888 567899999999999999999987 44 32 4444444 56799999999999988
Q ss_pred hHHHHHHHHHHH
Q 010684 454 KGKQMRNKAMEW 465 (504)
Q Consensus 454 ~~~~~~~~a~~l 465 (504)
+..++.+..
T Consensus 343 ---~~~~~m~~~ 351 (383)
T COG0381 343 ---EFYERMSNA 351 (383)
T ss_pred ---HHHHHHhcc
Confidence 555544433
No 106
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.09 E-value=0.011 Score=61.55 Aligned_cols=133 Identities=11% Similarity=0.051 Sum_probs=76.2
Q ss_pred eeEEEecCCcc-ccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchH---HHHhhccCcEEEeecchH---hhhc
Q 010684 306 SVIYVNFGSFI-FMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAE---FEVKAKEKGFVASWCPQE---EVLK 378 (504)
Q Consensus 306 ~~V~vs~GS~~-~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~nv~~~~~vpq~---~lL~ 378 (504)
.++++..|... +...+.+...+..+.+.+.++++.-.+.. ..... +..+.+.++.+....+.. .++.
T Consensus 291 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~------~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~ 364 (473)
T TIGR02095 291 VPLFGVISRLTQQKGVDLLLAALPELLELGGQLVVLGTGDP------ELEEALRELAERYPGNVRVIIGYDEALAHLIYA 364 (473)
T ss_pred CCEEEEEecCccccChHHHHHHHHHHHHcCcEEEEECCCCH------HHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHH
Confidence 45666667765 33344444444444434556555433320 01111 123345677766655543 4788
Q ss_pred CCCcceEEec---CCch-hHHHhhhcCCcEEecCCCC--CcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhc
Q 010684 379 HPSIGGFLTH---CGWN-SIVESLCSGVPMICWPFTG--DQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMME 451 (504)
Q Consensus 379 ~~~~~~~I~H---GG~g-s~~eal~~GvP~v~~P~~~--DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~ 451 (504)
.+|+ +|.- -|.| +.+||+++|+|.|+....+ |.-.+...- ..-+.|..+.. -++++++++|.+++.
T Consensus 365 ~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~-~~~~~G~l~~~----~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 365 GADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPE-AESGTGFLFEE----YDPGALLAALSRALR 436 (473)
T ss_pred hCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCC-CCCCceEEeCC----CCHHHHHHHHHHHHH
Confidence 8888 7743 2444 8899999999999876543 221111100 11267877763 578999999999987
No 107
>PLN00142 sucrose synthase
Probab=97.99 E-value=0.014 Score=63.34 Aligned_cols=90 Identities=12% Similarity=0.168 Sum_probs=55.1
Q ss_pred ccCcEEEee----cchHhhhc----CCCcceEEec---CCch-hHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEE
Q 010684 362 KEKGFVASW----CPQEEVLK----HPSIGGFLTH---CGWN-SIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGME 429 (504)
Q Consensus 362 ~~nv~~~~~----vpq~~lL~----~~~~~~~I~H---GG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~ 429 (504)
.++|.+.+. ++..++.. ..++ ||.- -|+| ++.||+.+|+|+|+.... .....| +.-..|..
T Consensus 641 ~~~V~flG~~~~~~~~~eLyr~iadaaDV--fVlPS~~EgFGLvvLEAMA~GlPVVATdvG----G~~EIV-~dG~tG~L 713 (815)
T PLN00142 641 KGQFRWIAAQTNRVRNGELYRYIADTKGA--FVQPALYEAFGLTVVEAMTCGLPTFATCQG----GPAEII-VDGVSGFH 713 (815)
T ss_pred CCcEEEcCCcCCcccHHHHHHHHHhhCCE--EEeCCcccCCCHHHHHHHHcCCCEEEcCCC----CHHHHh-cCCCcEEE
Confidence 366666543 33344543 2355 7753 4555 899999999999986553 344445 55346877
Q ss_pred ecCCCCCccHHHHHHHHHHH----hcCchH-HHHHHHH
Q 010684 430 INGDDEDVIRNEVEKLVREM----MEGEKG-KQMRNKA 462 (504)
Q Consensus 430 l~~~~~~~~~~~l~~ai~~v----l~~~~~-~~~~~~a 462 (504)
++. -++++++++|.++ ++|++. +.|.+++
T Consensus 714 V~P----~D~eaLA~aI~~lLekLl~Dp~lr~~mg~~A 747 (815)
T PLN00142 714 IDP----YHGDEAANKIADFFEKCKEDPSYWNKISDAG 747 (815)
T ss_pred eCC----CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 774 4678888887664 467732 3344444
No 108
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.93 E-value=0.0042 Score=64.72 Aligned_cols=103 Identities=16% Similarity=0.156 Sum_probs=70.6
Q ss_pred ccCcEEEeecchHhhhcCCCcceEEe---cCC-chhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCc
Q 010684 362 KEKGFVASWCPQEEVLKHPSIGGFLT---HCG-WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDV 437 (504)
Q Consensus 362 ~~nv~~~~~vpq~~lL~~~~~~~~I~---HGG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~ 437 (504)
.++|.+.++.+..+++..+++ +|. .-| ..++.||+++|+|+|+.-..+. +...+ +.-.-|..++..+..-
T Consensus 375 ~~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~G---~~eiI-~~g~nG~lv~~~~~~~ 448 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNYG---NPTFI-EDNKNGYLIPIDEEED 448 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCCCC---CHHHc-cCCCCEEEEeCCcccc
Confidence 467888898888889999998 775 334 4589999999999999765311 22334 4434566665210112
Q ss_pred c----HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Q 010684 438 I----RNEVEKLVREMMEGEKGKQMRNKAMEWKGLAE 470 (504)
Q Consensus 438 ~----~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~ 470 (504)
+ .++++++|.+++++++.+.|.+++++.++.+.
T Consensus 449 d~~~~~~~la~~I~~ll~~~~~~~~~~~a~~~a~~fs 485 (500)
T TIGR02918 449 DEDQIITALAEKIVEYFNSNDIDAFHEYSYQIAEGFL 485 (500)
T ss_pred chhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhcC
Confidence 2 78899999999965544667777777666554
No 109
>PLN02316 synthase/transferase
Probab=97.87 E-value=0.059 Score=60.09 Aligned_cols=85 Identities=7% Similarity=-0.007 Sum_probs=55.0
Q ss_pred ccCcEEEeecchH---hhhcCCCcceEEec----CCchhHHHhhhcCCcEEecCCCC--Ccchhh----hhh--hhhcce
Q 010684 362 KEKGFVASWCPQE---EVLKHPSIGGFLTH----CGWNSIVESLCSGVPMICWPFTG--DQPTNG----RYV--CNEWGV 426 (504)
Q Consensus 362 ~~nv~~~~~vpq~---~lL~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~--DQ~~na----~rv--~~~~G~ 426 (504)
++++.+....+.. .+++.+|+ ||.- +=..+.+||+++|+|.|+.-..+ |.-... .+. ...-+-
T Consensus 899 ~~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~t 976 (1036)
T PLN02316 899 HDRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPN 976 (1036)
T ss_pred CCeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCc
Confidence 4567776544543 58888998 8853 22358999999999998865533 222111 110 011246
Q ss_pred eEEecCCCCCccHHHHHHHHHHHhcC
Q 010684 427 GMEINGDDEDVIRNEVEKLVREMMEG 452 (504)
Q Consensus 427 G~~l~~~~~~~~~~~l~~ai~~vl~~ 452 (504)
|...+ .-+++.|..+|.++|.+
T Consensus 977 Gflf~----~~d~~aLa~AL~raL~~ 998 (1036)
T PLN02316 977 GFSFD----GADAAGVDYALNRAISA 998 (1036)
T ss_pred eEEeC----CCCHHHHHHHHHHHHhh
Confidence 77776 46789999999999974
No 110
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.81 E-value=0.00043 Score=61.16 Aligned_cols=82 Identities=20% Similarity=0.292 Sum_probs=63.9
Q ss_pred hccCcEEEeecch---HhhhcCCCcceEEec----CCchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCC
Q 010684 361 AKEKGFVASWCPQ---EEVLKHPSIGGFLTH----CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGD 433 (504)
Q Consensus 361 ~~~nv~~~~~vpq---~~lL~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~ 433 (504)
..+++.+.+++++ ..++..+++ +|+. |+..++.||+.+|+|+|+.- ...+...+ ...+.|..++.
T Consensus 71 ~~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~~----~~~~~e~~-~~~~~g~~~~~- 142 (172)
T PF00534_consen 71 LKENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIASD----IGGNNEII-NDGVNGFLFDP- 142 (172)
T ss_dssp CGTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEES----STHHHHHS-GTTTSEEEEST-
T ss_pred cccccccccccccccccccccccee--ccccccccccccccccccccccceeecc----ccCCceee-ccccceEEeCC-
Confidence 4579999999983 358888998 8877 67789999999999999754 45555556 66577988884
Q ss_pred CCCccHHHHHHHHHHHhcCc
Q 010684 434 DEDVIRNEVEKLVREMMEGE 453 (504)
Q Consensus 434 ~~~~~~~~l~~ai~~vl~~~ 453 (504)
-+.++++++|.++++++
T Consensus 143 ---~~~~~l~~~i~~~l~~~ 159 (172)
T PF00534_consen 143 ---NDIEELADAIEKLLNDP 159 (172)
T ss_dssp ---TSHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHCCH
Confidence 29999999999999987
No 111
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.80 E-value=0.00099 Score=67.87 Aligned_cols=95 Identities=22% Similarity=0.276 Sum_probs=65.8
Q ss_pred cCcEEEeecchHh---hhcCCCcceEEecCC----chhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCC
Q 010684 363 EKGFVASWCPQEE---VLKHPSIGGFLTHCG----WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDE 435 (504)
Q Consensus 363 ~nv~~~~~vpq~~---lL~~~~~~~~I~HGG----~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~ 435 (504)
+++.+.+|+++.+ ++..+++.++|...- ..+++||+++|+|+|+.... .....+ +.-+.|..+. .
T Consensus 289 ~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vg----g~~e~i-~~~~~G~l~~---~ 360 (407)
T cd04946 289 ISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVG----GTPEIV-DNGGNGLLLS---K 360 (407)
T ss_pred ceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCC----CcHHHh-cCCCcEEEeC---C
Confidence 5788899999764 555544444776543 46899999999999986543 345556 5644787776 3
Q ss_pred CccHHHHHHHHHHHhcCchH-HHHHHHHHHH
Q 010684 436 DVIRNEVEKLVREMMEGEKG-KQMRNKAMEW 465 (504)
Q Consensus 436 ~~~~~~l~~ai~~vl~~~~~-~~~~~~a~~l 465 (504)
.-+.++++++|.++++|++- +.|.+++++.
T Consensus 361 ~~~~~~la~~I~~ll~~~~~~~~m~~~ar~~ 391 (407)
T cd04946 361 DPTPNELVSSLSKFIDNEEEYQTMREKAREK 391 (407)
T ss_pred CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 56789999999999998732 3344444443
No 112
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.79 E-value=0.017 Score=60.07 Aligned_cols=92 Identities=9% Similarity=0.138 Sum_probs=64.3
Q ss_pred hccCcEEEeecchHhhhcCCCcceEEec----CCchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhc------ceeEEe
Q 010684 361 AKEKGFVASWCPQEEVLKHPSIGGFLTH----CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEW------GVGMEI 430 (504)
Q Consensus 361 ~~~nv~~~~~vpq~~lL~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~------G~G~~l 430 (504)
+.++|.+.+...-.++++.+++ +|.- |--.++.||+++|+|+|+-.. ......+ +.. ..|..+
T Consensus 352 l~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVatd~----g~~~elv-~~~~~~~~g~~G~lv 424 (475)
T cd03813 352 LEDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVATDV----GSCRELI-EGADDEALGPAGEVV 424 (475)
T ss_pred CCCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEECCC----CChHHHh-cCCcccccCCceEEE
Confidence 3578999886666679998888 6644 345689999999999999543 3334444 441 267776
Q ss_pred cCCCCCccHHHHHHHHHHHhcCchH-HHHHHHHH
Q 010684 431 NGDDEDVIRNEVEKLVREMMEGEKG-KQMRNKAM 463 (504)
Q Consensus 431 ~~~~~~~~~~~l~~ai~~vl~~~~~-~~~~~~a~ 463 (504)
+. -++++++++|.++++|++. +.+.++++
T Consensus 425 ~~----~d~~~la~ai~~ll~~~~~~~~~~~~a~ 454 (475)
T cd03813 425 PP----ADPEALARAILRLLKDPELRRAMGEAGR 454 (475)
T ss_pred CC----CCHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 63 5789999999999998832 33444443
No 113
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=97.77 E-value=0.0013 Score=66.94 Aligned_cols=112 Identities=13% Similarity=0.172 Sum_probs=74.9
Q ss_pred hccCcEEEeecchHh---hhcCCCcceEEec---------CCc-hhHHHhhhcCCcEEecCCCCCcchhhhhhhhhccee
Q 010684 361 AKEKGFVASWCPQEE---VLKHPSIGGFLTH---------CGW-NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVG 427 (504)
Q Consensus 361 ~~~nv~~~~~vpq~~---lL~~~~~~~~I~H---------GG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G 427 (504)
+.+++.+.+|+|+.+ ++..+++ +|.- -|. .++.||+.+|+|+|+....+ ....+ +.-..|
T Consensus 277 l~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g----~~E~v-~~~~~G 349 (406)
T PRK15427 277 LEDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG----IPELV-EADKSG 349 (406)
T ss_pred CCCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC----chhhh-cCCCce
Confidence 357899999999764 7888998 7752 244 57899999999999976532 33344 554567
Q ss_pred EEecCCCCCccHHHHHHHHHHHhc-CchH-HHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 010684 428 MEINGDDEDVIRNEVEKLVREMME-GEKG-KQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEI 490 (504)
Q Consensus 428 ~~l~~~~~~~~~~~l~~ai~~vl~-~~~~-~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 490 (504)
..++. -+.++++++|.++++ |++. +.+.+++++..+. .=+.+..++++.+.+
T Consensus 350 ~lv~~----~d~~~la~ai~~l~~~d~~~~~~~~~~ar~~v~~-------~f~~~~~~~~l~~~~ 403 (406)
T PRK15427 350 WLVPE----NDAQALAQRLAAFSQLDTDELAPVVKRAREKVET-------DFNQQVINRELASLL 403 (406)
T ss_pred EEeCC----CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHH
Confidence 77663 478999999999999 8742 3445555443322 114445555555443
No 114
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.75 E-value=0.0022 Score=64.72 Aligned_cols=85 Identities=13% Similarity=0.215 Sum_probs=62.5
Q ss_pred hhccCcEEEeecchHh---hhcCCCcceEEec----CCc-hhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEec
Q 010684 360 KAKEKGFVASWCPQEE---VLKHPSIGGFLTH----CGW-NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEIN 431 (504)
Q Consensus 360 ~~~~nv~~~~~vpq~~---lL~~~~~~~~I~H----GG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~ 431 (504)
++..++.+.+++|+.+ +++.+++ +|.. .|. .++.||+++|+|+|+....+ +...+ +.-..|..+.
T Consensus 254 ~l~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg----~~Eiv-~~~~~G~~l~ 326 (380)
T PRK15484 254 RIGDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKGG----ITEFV-LEGITGYHLA 326 (380)
T ss_pred hcCCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCCC----cHhhc-ccCCceEEEe
Confidence 3457888999998654 6888998 7653 343 57789999999999977632 33344 5545676554
Q ss_pred CCCCCccHHHHHHHHHHHhcCch
Q 010684 432 GDDEDVIRNEVEKLVREMMEGEK 454 (504)
Q Consensus 432 ~~~~~~~~~~l~~ai~~vl~~~~ 454 (504)
...++++++++|.++++|++
T Consensus 327 ---~~~d~~~la~~I~~ll~d~~ 346 (380)
T PRK15484 327 ---EPMTSDSIISDINRTLADPE 346 (380)
T ss_pred ---CCCCHHHHHHHHHHHHcCHH
Confidence 24579999999999999984
No 115
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.75 E-value=0.014 Score=57.02 Aligned_cols=173 Identities=12% Similarity=0.057 Sum_probs=95.3
Q ss_pred CCCeeEEEecCCccccCHHHHHHHHHHHHhC-----CCCEEEEEcCCCCCCCCCCCchHHHH-hhccCc-EEEeec-ch-
Q 010684 303 EPKSVIYVNFGSFIFMNKQQLIEVAMGLVNS-----NHPFLWIIRPDLVTGETADLPAEFEV-KAKEKG-FVASWC-PQ- 373 (504)
Q Consensus 303 ~~~~~V~vs~GS~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~nv-~~~~~v-pq- 373 (504)
.+++++.+-.||-.+--...+..+.+++..+ +.+|+.-+.+... ..... .+..+. ...-++ ++
T Consensus 186 ~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 257 (381)
T COG0763 186 ADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAKY--------RRIIEEALKWEVAGLSLILIDGE 257 (381)
T ss_pred CCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcHHH--------HHHHHHHhhccccCceEEecCch
Confidence 3667999999997533333344444444433 3567766543310 01111 111111 112222 22
Q ss_pred H-hhhcCCCcceEEecCCchhHHHhhhcCCcEEecCCC-CCcchhhhhhhhhcceeE-------EecCC--CCCccHHHH
Q 010684 374 E-EVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFT-GDQPTNGRYVCNEWGVGM-------EINGD--DEDVIRNEV 442 (504)
Q Consensus 374 ~-~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~-~DQ~~na~rv~~~~G~G~-------~l~~~--~~~~~~~~l 442 (504)
. +.+..+|+ .+.-+|- -+.|+..+|+|||+.=-. .=-++.+++.+.-.=+++ .+-+. ++..+++.|
T Consensus 258 ~~~a~~~aD~--al~aSGT-~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~l 334 (381)
T COG0763 258 KRKAFAAADA--ALAASGT-ATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENL 334 (381)
T ss_pred HHHHHHHhhH--HHHhccH-HHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHH
Confidence 2 47888888 7766663 468999999999985321 111334554422111111 11100 257889999
Q ss_pred HHHHHHHhcCch-HHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 010684 443 EKLVREMMEGEK-GKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEI 490 (504)
Q Consensus 443 ~~ai~~vl~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 490 (504)
++++..++.|++ .+.+++...++.+.++ .++.++.+.+-+++.+
T Consensus 335 a~~l~~ll~~~~~~~~~~~~~~~l~~~l~----~~~~~e~aA~~vl~~~ 379 (381)
T COG0763 335 ARALEELLLNGDRREALKEKFRELHQYLR----EDPASEIAAQAVLELL 379 (381)
T ss_pred HHHHHHHhcChHhHHHHHHHHHHHHHHHc----CCcHHHHHHHHHHHHh
Confidence 999999999883 2567777777777665 3545566655555543
No 116
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.74 E-value=0.0051 Score=61.71 Aligned_cols=102 Identities=14% Similarity=0.168 Sum_probs=70.3
Q ss_pred hccCcEEEeecchH-hhhcCCCcceEEec--CCchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCc
Q 010684 361 AKEKGFVASWCPQE-EVLKHPSIGGFLTH--CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDV 437 (504)
Q Consensus 361 ~~~nv~~~~~vpq~-~lL~~~~~~~~I~H--GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~ 437 (504)
+++++.+.++.++. .++..+++-++.++ |...++.||+++|+|+|+...... ....+ +.-..|..++ .-
T Consensus 259 ~~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~g---~~~~v-~~~~~G~lv~----~~ 330 (372)
T cd04949 259 LEDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNYG---PSEII-EDGENGYLVP----KG 330 (372)
T ss_pred CcceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCCC---cHHHc-ccCCCceEeC----CC
Confidence 35678888876654 58889998333333 335689999999999999654321 23334 4546777766 35
Q ss_pred cHHHHHHHHHHHhcCchH-HHHHHHHHHHHHHHH
Q 010684 438 IRNEVEKLVREMMEGEKG-KQMRNKAMEWKGLAE 470 (504)
Q Consensus 438 ~~~~l~~ai~~vl~~~~~-~~~~~~a~~l~~~~~ 470 (504)
+.++++++|.++++|++- +.+.+++++.++.+.
T Consensus 331 d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~s 364 (372)
T cd04949 331 DIEALAEAIIELLNDPKLLQKFSEAAYENAERYS 364 (372)
T ss_pred cHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhh
Confidence 789999999999998743 556666666655543
No 117
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.61 E-value=0.099 Score=52.57 Aligned_cols=79 Identities=13% Similarity=0.047 Sum_probs=53.8
Q ss_pred ccCcEEEeecchHh---hhcCCCcceEE------ecCCc-hhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEec
Q 010684 362 KEKGFVASWCPQEE---VLKHPSIGGFL------THCGW-NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEIN 431 (504)
Q Consensus 362 ~~nv~~~~~vpq~~---lL~~~~~~~~I------~HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~ 431 (504)
.+||.+.+++|+.+ ++.++++.++- +.++. +.+.|++++|+|+|+.++ ...+ +..+ |..+.
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~-~~~~-~~~~~ 323 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVR-RYED-EVVLI 323 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHH-hhcC-cEEEe
Confidence 37999999998665 78889983221 22333 358999999999998763 2222 3323 33333
Q ss_pred CCCCCccHHHHHHHHHHHhcCc
Q 010684 432 GDDEDVIRNEVEKLVREMMEGE 453 (504)
Q Consensus 432 ~~~~~~~~~~l~~ai~~vl~~~ 453 (504)
. -+.+++.++|.+++.++
T Consensus 324 ~----~d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 324 A----DDPEEFVAAIEKALLED 341 (373)
T ss_pred C----CCHHHHHHHHHHHHhcC
Confidence 2 27899999999987654
No 118
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.59 E-value=0.0016 Score=65.97 Aligned_cols=142 Identities=18% Similarity=0.253 Sum_probs=78.4
Q ss_pred CCCeeEEEecCCccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHh--hccCcEEEeecchHh---hh
Q 010684 303 EPKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVK--AKEKGFVASWCPQEE---VL 377 (504)
Q Consensus 303 ~~~~~V~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~nv~~~~~vpq~~---lL 377 (504)
+++.++|.||.+....+++.+..-.+-+++.+.-.+|........ ...+...+... .++++.+..+.++.+ .+
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~--~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~~ 359 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASG--EARLRRRFAAHGVDPDRIIFSPVAPREEHLRRY 359 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTH--HHHHHHHHHHTTS-GGGEEEEE---HHHHHHHG
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHH--HHHHHHHHHHcCCChhhEEEcCCCCHHHHHHHh
Confidence 355699999999999999999999999999998888887644210 00011111111 247888888777654 44
Q ss_pred cCCCcceEE---ecCCchhHHHhhhcCCcEEecCCCCCcchhh-hhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCc
Q 010684 378 KHPSIGGFL---THCGWNSIVESLCSGVPMICWPFTGDQPTNG-RYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE 453 (504)
Q Consensus 378 ~~~~~~~~I---~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na-~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~ 453 (504)
..+|+ ++ ..+|+.|++|||+.|||+|.+|--.=.--.+ ..+ ..+|+.-.+- .+.++-.+...++-+|+
T Consensus 360 ~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL-~~lGl~ElIA-----~s~~eYv~~Av~La~D~ 431 (468)
T PF13844_consen 360 QLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASIL-RALGLPELIA-----DSEEEYVEIAVRLATDP 431 (468)
T ss_dssp GG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHH-HHHT-GGGB------SSHHHHHHHHHHHHH-H
T ss_pred hhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHH-HHcCCchhcC-----CCHHHHHHHHHHHhCCH
Confidence 55666 54 4678999999999999999999533222222 233 4556653333 35566666665777777
Q ss_pred h
Q 010684 454 K 454 (504)
Q Consensus 454 ~ 454 (504)
+
T Consensus 432 ~ 432 (468)
T PF13844_consen 432 E 432 (468)
T ss_dssp H
T ss_pred H
Confidence 3
No 119
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=97.45 E-value=0.17 Score=51.49 Aligned_cols=179 Identities=10% Similarity=0.154 Sum_probs=104.0
Q ss_pred ccccCCCCCeeEEEecCCccc----------cCHHHHHHHHHHHHhCCCCEEEEEcCCCCCC-CCCCC--chHHHHhhc-
Q 010684 297 QWLDCKEPKSVIYVNFGSFIF----------MNKQQLIEVAMGLVNSNHPFLWIIRPDLVTG-ETADL--PAEFEVKAK- 362 (504)
Q Consensus 297 ~~l~~~~~~~~V~vs~GS~~~----------~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~-~~~~~--~~~~~~~~~- 362 (504)
.|+...+.+++|-|+.-.... ...+.+..+++.+.+.|.++++.--...... .+... ...+.+.++
T Consensus 226 ~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~~ 305 (426)
T PRK10017 226 HWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHVSD 305 (426)
T ss_pred hhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhccc
Confidence 454432344577777543321 1123344555666566888776643211100 00001 112223332
Q ss_pred -cCcEEE-e-ecchH--hhhcCCCcceEEecCCchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEE-ecCCCCC
Q 010684 363 -EKGFVA-S-WCPQE--EVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGME-INGDDED 436 (504)
Q Consensus 363 -~nv~~~-~-~vpq~--~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~-l~~~~~~ 436 (504)
+++.+. + +-+.+ .++.++++ +|..==+ ++.-|+..|||.+.++.. +.....+ +.+|..-. ++. +.
T Consensus 306 ~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~RlH-a~I~a~~~gvP~i~i~Y~---~K~~~~~-~~lg~~~~~~~~--~~ 376 (426)
T PRK10017 306 PARYHVVMDELNDLEMGKILGACEL--TVGTRLH-SAIISMNFGTPAIAINYE---HKSAGIM-QQLGLPEMAIDI--RH 376 (426)
T ss_pred ccceeEecCCCChHHHHHHHhhCCE--EEEecch-HHHHHHHcCCCEEEeeeh---HHHHHHH-HHcCCccEEech--hh
Confidence 333432 2 33433 68889988 8854333 456688999999999983 4444445 66777654 555 78
Q ss_pred ccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHh
Q 010684 437 VIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEILL 492 (504)
Q Consensus 437 ~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 492 (504)
++.++|.+.+.++++|.+ .++++.++..+..+. ...+.+.++++.+-+
T Consensus 377 l~~~~Li~~v~~~~~~r~--~~~~~l~~~v~~~r~------~~~~~~~~~~~~~~~ 424 (426)
T PRK10017 377 LLDGSLQAMVADTLGQLP--ALNARLAEAVSRERQ------TGMQMVQSVLERIGE 424 (426)
T ss_pred CCHHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHH------HHHHHHHHHHHHhcc
Confidence 899999999999999864 577766666666664 335666777776654
No 120
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.0013 Score=53.51 Aligned_cols=107 Identities=16% Similarity=0.100 Sum_probs=69.4
Q ss_pred EEEecCCccccCHHHHHH--HHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHhhccC-cEEEeec--c-hHhhhcCCC
Q 010684 308 IYVNFGSFIFMNKQQLIE--VAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEK-GFVASWC--P-QEEVLKHPS 381 (504)
Q Consensus 308 V~vs~GS~~~~~~~~~~~--~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~n-v~~~~~v--p-q~~lL~~~~ 381 (504)
+|||-||....-...+.. ..+-.+.-..++|..+|... .. |-| .++.+|. + -+.+...++
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d------~k--------pvagl~v~~F~~~~kiQsli~dar 67 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGD------IK--------PVAGLRVYGFDKEEKIQSLIHDAR 67 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCC------cc--------cccccEEEeechHHHHHHHhhcce
Confidence 689999984211111111 22222222358899998652 11 112 2555543 4 334666667
Q ss_pred cceEEecCCchhHHHhhhcCCcEEecCCC--------CCcchhhhhhhhhcceeEEec
Q 010684 382 IGGFLTHCGWNSIVESLCSGVPMICWPFT--------GDQPTNGRYVCNEWGVGMEIN 431 (504)
Q Consensus 382 ~~~~I~HGG~gs~~eal~~GvP~v~~P~~--------~DQ~~na~rv~~~~G~G~~l~ 431 (504)
+ +|.|+|.||+..+++.++|.|++|-. .+|-..|..+ .+.+.-+...
T Consensus 68 I--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~kl-ae~~~vv~~s 122 (161)
T COG5017 68 I--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKL-AEINYVVACS 122 (161)
T ss_pred E--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHH-HhcCceEEEc
Confidence 6 99999999999999999999999963 3688889988 5667666655
No 121
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.37 E-value=0.14 Score=48.53 Aligned_cols=105 Identities=18% Similarity=0.181 Sum_probs=71.6
Q ss_pred CCCcccHHHHHHHHHHHHhCCCeEEEEeCcc-c-hHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCCCCcccHH-HHH
Q 010684 18 SPFQSHIKAMLKLAKLLHHKGFHITFVNTEF-N-HRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTAQDAY-SLG 94 (504)
Q Consensus 18 ~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~-~-~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~-~~~ 94 (504)
.+-.-|+.-+-.+-++|.++||+|.+-+=+. . .+.+... |+.+..+...- ...+. .+.
T Consensus 7 I~n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~y----------gf~~~~Igk~g---------~~tl~~Kl~ 67 (346)
T COG1817 7 IGNPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLY----------GFPYKSIGKHG---------GVTLKEKLL 67 (346)
T ss_pred cCCcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHh----------CCCeEeecccC---------CccHHHHHH
Confidence 3455688889999999999999998766332 2 2333333 78877776322 11222 344
Q ss_pred HHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEcccc
Q 010684 95 ENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTIS 154 (504)
Q Consensus 95 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~lgiP~v~~~~~~ 154 (504)
....+. ..+.++..+. +||+.+. -..+.+..+|--+|+|.+.+.-+.
T Consensus 68 ~~~eR~---~~L~ki~~~~---------kpdv~i~-~~s~~l~rvafgLg~psIi~~D~e 114 (346)
T COG1817 68 ESAERV---YKLSKIIAEF---------KPDVAIG-KHSPELPRVAFGLGIPSIIFVDNE 114 (346)
T ss_pred HHHHHH---HHHHHHHhhc---------CCceEee-cCCcchhhHHhhcCCceEEecCCh
Confidence 444442 3566666654 9999999 567789999999999999986554
No 122
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.20 E-value=0.0021 Score=54.15 Aligned_cols=127 Identities=17% Similarity=0.200 Sum_probs=67.9
Q ss_pred eEEEecCCcc-ccCHHHHHH-HHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHhhccCcEEEeecchH-hhhcCCCcc
Q 010684 307 VIYVNFGSFI-FMNKQQLIE-VAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQE-EVLKHPSIG 383 (504)
Q Consensus 307 ~V~vs~GS~~-~~~~~~~~~-~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~-~lL~~~~~~ 383 (504)
+.++++|+.. ....+.+.. +++.+.+...++-+.+-+.. ++.+.+...+|+.+.+|++.. +++..+++.
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~--------~~~l~~~~~~~v~~~g~~~e~~~~l~~~dv~ 74 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNG--------PDELKRLRRPNVRFHGFVEELPEILAAADVG 74 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECES--------S-HHCCHHHCTEEEE-S-HHHHHHHHC-SEE
T ss_pred ccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCC--------HHHHHHhcCCCEEEcCCHHHHHHHHHhCCEE
Confidence 4556666664 334444333 55555543334444443321 112211125699999999743 589999995
Q ss_pred eEEec---CCchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcC
Q 010684 384 GFLTH---CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEG 452 (504)
Q Consensus 384 ~~I~H---GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~ 452 (504)
+..+. |-.+++.|++.+|+|+|+.+. .....+ +..+.|..+. . +++++.++|.++++|
T Consensus 75 l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~-~~~~~~~~~~---~--~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 75 LIPSRFNEGFPNKLLEAMAAGKPVIASDN-----GAEGIV-EEDGCGVLVA---N--DPEELAEAIERLLND 135 (135)
T ss_dssp EE-BSS-SCC-HHHHHHHCTT--EEEEHH-----HCHCHS----SEEEE-T---T---HHHHHHHHHHHHH-
T ss_pred EEEeeCCCcCcHHHHHHHHhCCCEEECCc-----chhhhe-eecCCeEEEC---C--CHHHHHHHHHHHhcC
Confidence 55432 234899999999999999776 122233 4457777763 3 789999999999875
No 123
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.13 E-value=0.073 Score=48.55 Aligned_cols=50 Identities=16% Similarity=0.240 Sum_probs=38.1
Q ss_pred ccCcEEEeecch-H--h-hhcCCCcceEEecCC----chhHHHhhhcCCcEEecCCCCCc
Q 010684 362 KEKGFVASWCPQ-E--E-VLKHPSIGGFLTHCG----WNSIVESLCSGVPMICWPFTGDQ 413 (504)
Q Consensus 362 ~~nv~~~~~vpq-~--~-lL~~~~~~~~I~HGG----~gs~~eal~~GvP~v~~P~~~DQ 413 (504)
.+|+.+.++++. + . ++..+++ +|+-.. .+++.||+.+|+|+|+.+..+.+
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~ 217 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGGPP 217 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCCcc
Confidence 468888888632 2 2 4444888 888776 78999999999999998876544
No 124
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.10 E-value=0.0038 Score=61.75 Aligned_cols=110 Identities=16% Similarity=0.311 Sum_probs=77.9
Q ss_pred ccCcEEEeecchHhh---hcCCCcceEEecC-------Cc------hhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcc
Q 010684 362 KEKGFVASWCPQEEV---LKHPSIGGFLTHC-------GW------NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWG 425 (504)
Q Consensus 362 ~~nv~~~~~vpq~~l---L~~~~~~~~I~HG-------G~------gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G 425 (504)
.+||.+.+|+|+.++ |.. +.+++...- .. +-+.+.+++|+|+|+. ++...+..| ++.+
T Consensus 206 ~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V-~~~~ 279 (333)
T PRK09814 206 SANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFI-VENG 279 (333)
T ss_pred CCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHH-HhCC
Confidence 579999999998765 444 443333221 11 1267789999999985 445677777 7889
Q ss_pred eeEEecCCCCCccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Q 010684 426 VGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVN 488 (504)
Q Consensus 426 ~G~~l~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 488 (504)
+|+.++ +.+++.+++.++ ++++.+.|++|++++++++++ |--...++.+++.
T Consensus 280 ~G~~v~------~~~el~~~l~~~-~~~~~~~m~~n~~~~~~~~~~----g~~~~~~~~~~~~ 331 (333)
T PRK09814 280 LGFVVD------SLEELPEIIDNI-TEEEYQEMVENVKKISKLLRN----GYFTKKALVDAIK 331 (333)
T ss_pred ceEEeC------CHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHh
Confidence 999987 357899999885 445456799999999999984 5555555555543
No 125
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.46 E-value=0.059 Score=45.49 Aligned_cols=103 Identities=12% Similarity=0.209 Sum_probs=63.7
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCCCCcccHH
Q 010684 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTAQDAY 91 (504)
Q Consensus 12 ~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 91 (504)
||++++.....| ...+++.|.++||+|++++.....+..... .++.+..++-.. . . ..
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~---------~~i~~~~~~~~~--k-----~---~~ 58 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEII---------EGIKVIRLPSPR--K-----S---PL 58 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhHh---------CCeEEEEecCCC--C-----c---cH
Confidence 577887776666 457799999999999999985443222211 278887774221 0 0 11
Q ss_pred HHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc---hHHHHHHHcC-CCeEEEcc
Q 010684 92 SLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLP---FTITAAQQLG-LPIVLFFT 152 (504)
Q Consensus 92 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~---~~~~~A~~lg-iP~v~~~~ 152 (504)
.++. . . .+..+ +++. +||+|.+..... .+..++...| +|++....
T Consensus 59 ~~~~-----~-~-~l~k~---ik~~------~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 59 NYIK-----Y-F-RLRKI---IKKE------KPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred HHHH-----H-H-HHHHH---hccC------CCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 1121 1 1 23344 4444 999998887643 3445667888 99886543
No 126
>PHA01633 putative glycosyl transferase group 1
Probab=96.34 E-value=0.13 Score=50.54 Aligned_cols=103 Identities=15% Similarity=0.101 Sum_probs=64.7
Q ss_pred hccCcEEEe---ecchH---hhhcCCCcceEEec---CC-chhHHHhhhcCCcEEecCC------CCCc------chhhh
Q 010684 361 AKEKGFVAS---WCPQE---EVLKHPSIGGFLTH---CG-WNSIVESLCSGVPMICWPF------TGDQ------PTNGR 418 (504)
Q Consensus 361 ~~~nv~~~~---~vpq~---~lL~~~~~~~~I~H---GG-~gs~~eal~~GvP~v~~P~------~~DQ------~~na~ 418 (504)
+++++.+.+ ++++. ++++.+++ ||.- -| ..++.||+++|+|+|+--. .+|+ .+...
T Consensus 199 l~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~ 276 (335)
T PHA01633 199 VPANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVE 276 (335)
T ss_pred CCCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHH
Confidence 467888874 55544 57888888 8863 24 4578999999999998633 3343 22222
Q ss_pred hhhh-hcceeEEecCCCCCccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Q 010684 419 YVCN-EWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLA 469 (504)
Q Consensus 419 rv~~-~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~ 469 (504)
..++ ..|.|..++ ..++++++++|.+++...+.+....++++.++.+
T Consensus 277 ~~~~~~~g~g~~~~----~~d~~~la~ai~~~~~~~~~~~~~~~~~~~a~~f 324 (335)
T PHA01633 277 EYYDKEHGQKWKIH----KFQIEDMANAIILAFELQDREERSMKLKELAKKY 324 (335)
T ss_pred HhcCcccCceeeec----CCCHHHHHHHHHHHHhccChhhhhHHHHHHHHhc
Confidence 2212 336666655 5789999999999965432223334445444444
No 127
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=96.01 E-value=0.95 Score=44.03 Aligned_cols=57 Identities=18% Similarity=0.233 Sum_probs=42.2
Q ss_pred chHhhhcCCCcceEEecCCchhHHHhhhcCCcEEecCCCCCcch----hhhhhhhhcceeEEec
Q 010684 372 PQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPT----NGRYVCNEWGVGMEIN 431 (504)
Q Consensus 372 pq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~----na~rv~~~~G~G~~l~ 431 (504)
|+..+|..++. .|||---.+.+.||+..|+|+.++|.-. +.. ..+.+ ++.|+-....
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L-~~~g~~r~~~ 281 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSL-EERGAVRPFT 281 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHH-HHCCCEEECC
Confidence 57788998887 5667777889999999999999999976 322 23344 4557766655
No 128
>PRK14098 glycogen synthase; Provisional
Probab=95.99 E-value=0.33 Score=50.68 Aligned_cols=135 Identities=13% Similarity=0.069 Sum_probs=76.9
Q ss_pred eeEEEecCCcc-ccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHhhccCcEEEeecchH---hhhcCCC
Q 010684 306 SVIYVNFGSFI-FMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQE---EVLKHPS 381 (504)
Q Consensus 306 ~~V~vs~GS~~-~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~---~lL~~~~ 381 (504)
.++++..|... +...+.+...+..+...+.+++..-.+... ....+ ..+.++.++++.+...++.. .+++.+|
T Consensus 307 ~~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lvivG~G~~~--~~~~l-~~l~~~~~~~V~~~g~~~~~~~~~~~a~aD 383 (489)
T PRK14098 307 TPLVGVIINFDDFQGAELLAESLEKLVELDIQLVICGSGDKE--YEKRF-QDFAEEHPEQVSVQTEFTDAFFHLAIAGLD 383 (489)
T ss_pred CCEEEEeccccccCcHHHHHHHHHHHHhcCcEEEEEeCCCHH--HHHHH-HHHHHHCCCCEEEEEecCHHHHHHHHHhCC
Confidence 35666667654 333444433333343345555544332200 00001 12223456789888888764 5888999
Q ss_pred cceEEecC---Cc-hhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHh
Q 010684 382 IGGFLTHC---GW-NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMM 450 (504)
Q Consensus 382 ~~~~I~HG---G~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl 450 (504)
+ +|.-. |. .+.+||+++|+|.|+....+-........ +.-+.|...+ .-++++++++|.+++
T Consensus 384 i--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~-~~~~~G~l~~----~~d~~~la~ai~~~l 449 (489)
T PRK14098 384 M--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVS-EDKGSGFIFH----DYTPEALVAKLGEAL 449 (489)
T ss_pred E--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCC-CCCCceeEeC----CCCHHHHHHHHHHHH
Confidence 8 77533 32 37789999999988876543211111111 2236777776 357899999999876
No 129
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=95.98 E-value=0.41 Score=46.88 Aligned_cols=134 Identities=10% Similarity=0.012 Sum_probs=74.8
Q ss_pred CCeeEEEecCC-cc--ccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHhhccCcEEEee--cchH-hhh
Q 010684 304 PKSVIYVNFGS-FI--FMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASW--CPQE-EVL 377 (504)
Q Consensus 304 ~~~~V~vs~GS-~~--~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~--vpq~-~lL 377 (504)
+++.|.+..|+ .. ..+.+.+..+++.+...+.++++..++... ......+.+..+ +..+.+- +++. .++
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e----~~~~~~i~~~~~-~~~l~g~~sL~el~ali 252 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAE----KQRAERIAEALP-GAVVLPKMSLAEVAALL 252 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHH----HHHHHHHHhhCC-CCeecCCCCHHHHHHHH
Confidence 34566555554 33 556778888888887667776655443310 001111222222 2233342 3443 589
Q ss_pred cCCCcceEEecCCchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeE-Ee-cCCCCCccHHHHHHHHHHHh
Q 010684 378 KHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGM-EI-NGDDEDVIRNEVEKLVREMM 450 (504)
Q Consensus 378 ~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~-~l-~~~~~~~~~~~l~~ai~~vl 450 (504)
+++++ +|+. -.|.++=|...|+|+|++=-..+ ..+- .=+|-.. .+ ......++++++.+++.++|
T Consensus 253 ~~a~l--~I~~-DSgp~HlAaa~g~P~i~lfg~t~----p~~~-~P~~~~~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 253 AGADA--VVGV-DTGLTHLAAALDKPTVTLYGATD----PGRT-GGYGKPNVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred HcCCE--EEeC-CChHHHHHHHcCCCEEEEECCCC----Hhhc-ccCCCCceEEccCccCCCCHHHHHHHHHhhC
Confidence 99998 8864 56889999999999997621111 1111 0011110 00 10126899999999998875
No 130
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.082 Score=54.04 Aligned_cols=117 Identities=15% Similarity=0.210 Sum_probs=81.5
Q ss_pred CCCeeEEEecCCccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHh------hccCcEEEeecc---h
Q 010684 303 EPKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVK------AKEKGFVASWCP---Q 373 (504)
Q Consensus 303 ~~~~~V~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~nv~~~~~vp---q 373 (504)
+++.+||+||+......++.+..=++-++..+--++|..+++..+ .+...+++. -+++.++.+-.| |
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~----~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h 502 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDA----EINARLRDLAEREGVDSERLRFLPPAPNEDH 502 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcH----HHHHHHHHHHHHcCCChhheeecCCCCCHHH
Confidence 355699999999999999999998888999999999999874211 111122211 135777776655 3
Q ss_pred HhhhcCCCcceEEe---cCCchhHHHhhhcCCcEEecCCCCCcch--hhhhhhhhccee
Q 010684 374 EEVLKHPSIGGFLT---HCGWNSIVESLCSGVPMICWPFTGDQPT--NGRYVCNEWGVG 427 (504)
Q Consensus 374 ~~lL~~~~~~~~I~---HGG~gs~~eal~~GvP~v~~P~~~DQ~~--na~rv~~~~G~G 427 (504)
.+-+..+|+ |.. =||+.|..|+|..|||+|..+ ++||- |+.-++..+|+-
T Consensus 503 ~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~ 557 (620)
T COG3914 503 RARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIP 557 (620)
T ss_pred HHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCc
Confidence 445666777 775 599999999999999999876 45543 344443444443
No 131
>PRK10125 putative glycosyl transferase; Provisional
Probab=95.71 E-value=2.8 Score=42.62 Aligned_cols=101 Identities=10% Similarity=0.030 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhCCCCE-EEEEcCCCCCCCCCCCchHHHHhhccCcEEEeecc-h---HhhhcCCCcceEEec----CCc
Q 010684 321 QQLIEVAMGLVNSNHPF-LWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCP-Q---EEVLKHPSIGGFLTH----CGW 391 (504)
Q Consensus 321 ~~~~~~~~a~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vp-q---~~lL~~~~~~~~I~H----GG~ 391 (504)
+....+++|+..++.++ ++.+|... . ...+++...++.. + ..++..+|+ ||.- |-.
T Consensus 256 Kg~~~li~A~~~l~~~~~L~ivG~g~---------~----~~~~~v~~~g~~~~~~~l~~~y~~aDv--fV~pS~~Egfp 320 (405)
T PRK10125 256 KTDQQLVREMMALGDKIELHTFGKFS---------P----FTAGNVVNHGFETDKRKLMSALNQMDA--LVFSSRVDNYP 320 (405)
T ss_pred ccHHHHHHHHHhCCCCeEEEEEcCCC---------c----ccccceEEecCcCCHHHHHHHHHhCCE--EEECCccccCc
Confidence 33566888888776543 34444321 0 0124566666653 3 346667888 7763 335
Q ss_pred hhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHH
Q 010684 392 NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLV 446 (504)
Q Consensus 392 gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai 446 (504)
.++.||+++|+|+|+....+ ....+ +. +.|..++. -+.++|++++
T Consensus 321 ~vilEAmA~G~PVVat~~gG----~~Eiv-~~-~~G~lv~~----~d~~~La~~~ 365 (405)
T PRK10125 321 LILCEALSIGVPVIATHSDA----AREVL-QK-SGGKTVSE----EEVLQLAQLS 365 (405)
T ss_pred CHHHHHHHcCCCEEEeCCCC----hHHhE-eC-CcEEEECC----CCHHHHHhcc
Confidence 68999999999999998764 22223 44 56887774 3677888754
No 132
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=95.63 E-value=0.012 Score=46.24 Aligned_cols=52 Identities=13% Similarity=0.160 Sum_probs=43.0
Q ss_pred hhhhccccCCCCCeeEEEecCCcccc---CH--HHHHHHHHHHHhCCCCEEEEEcCC
Q 010684 293 TECLQWLDCKEPKSVIYVNFGSFIFM---NK--QQLIEVAMGLVNSNHPFLWIIRPD 344 (504)
Q Consensus 293 ~~l~~~l~~~~~~~~V~vs~GS~~~~---~~--~~~~~~~~a~~~~~~~~i~~~~~~ 344 (504)
..+-+|+...+.++.|++|+||.... .. ..+..+++++..++..++..++..
T Consensus 28 ~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~ 84 (97)
T PF06722_consen 28 AVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAA 84 (97)
T ss_dssp EEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTC
T ss_pred CCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHH
Confidence 34557999888999999999998633 22 468999999999999999999865
No 133
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.54 E-value=0.064 Score=55.08 Aligned_cols=143 Identities=18% Similarity=0.251 Sum_probs=86.9
Q ss_pred CCCeeEEEecCCccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHH--hhccCcEEEeecchHhhhcC-
Q 010684 303 EPKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEV--KAKEKGFVASWCPQEEVLKH- 379 (504)
Q Consensus 303 ~~~~~V~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~nv~~~~~vpq~~lL~~- 379 (504)
+++.+||.+|--.-..+++.+..-++-+++.+.-++|.+.....-++ .+-.-..+ --|+++.+..-+.-.+-+++
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge~--rf~ty~~~~Gl~p~riifs~va~k~eHvrr~ 833 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEQ--RFRTYAEQLGLEPDRIIFSPVAAKEEHVRRG 833 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccchH--HHHHHHHHhCCCccceeeccccchHHHHHhh
Confidence 34568999988777889999999999999999999999875532110 00000011 01466666554443332222
Q ss_pred --CC--cceEEecCCchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCc
Q 010684 380 --PS--IGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE 453 (504)
Q Consensus 380 --~~--~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~ 453 (504)
+| +.-..+ .|+.|.++.|++|||||.+|.-.--...|.-+...+|+|.-+- -+.++-.+.--++-+|.
T Consensus 834 ~LaDv~LDTplc-nGhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hlia-----k~~eEY~~iaV~Latd~ 905 (966)
T KOG4626|consen 834 QLADVCLDTPLC-NGHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIA-----KNREEYVQIAVRLATDK 905 (966)
T ss_pred hhhhhcccCcCc-CCcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHh-----hhHHHHHHHHHHhhcCH
Confidence 22 222444 4788999999999999999984322233322224678887444 24555555444555555
No 134
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.54 E-value=3.8 Score=42.98 Aligned_cols=64 Identities=20% Similarity=0.229 Sum_probs=47.0
Q ss_pred ccCcEEEeecchH-hhhcCCCcceEEec---CC-chhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecC
Q 010684 362 KEKGFVASWCPQE-EVLKHPSIGGFLTH---CG-WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEING 432 (504)
Q Consensus 362 ~~nv~~~~~vpq~-~lL~~~~~~~~I~H---GG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~ 432 (504)
.++|.+.+|.... .+|..+++ ||.. -| .+++.||+++|+|+|+.... .+...+ +.-..|..++.
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdvG----G~~EiV-~dG~nG~LVp~ 522 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPAG----GSAECF-IEGVSGFILDD 522 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCCC----CcHHHc-ccCCcEEEECC
Confidence 4789999986543 58899999 8853 44 56999999999999987653 344445 45467877774
No 135
>PHA01630 putative group 1 glycosyl transferase
Probab=95.43 E-value=0.45 Score=46.89 Aligned_cols=76 Identities=11% Similarity=0.111 Sum_probs=48.5
Q ss_pred ecchHh---hhcCCCcceEEe---cCC-chhHHHhhhcCCcEEecCCCC--Ccc---hhhhhhhhh-----------cce
Q 010684 370 WCPQEE---VLKHPSIGGFLT---HCG-WNSIVESLCSGVPMICWPFTG--DQP---TNGRYVCNE-----------WGV 426 (504)
Q Consensus 370 ~vpq~~---lL~~~~~~~~I~---HGG-~gs~~eal~~GvP~v~~P~~~--DQ~---~na~rv~~~-----------~G~ 426 (504)
++|+.+ +++.+|+ +|. ..| ..++.||+++|+|+|+.-..+ |.- .|+-.+ +. .++
T Consensus 197 ~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv-~~~~~~~~~~~~~~~~ 273 (331)
T PHA01630 197 PLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWI-KSGRKPKLWYTNPIHV 273 (331)
T ss_pred cCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEe-eecccccccccCCccc
Confidence 466554 6888998 663 333 558999999999999976543 321 222222 11 234
Q ss_pred eEEecCCCCCccHHHHHHHHHHHhcCc
Q 010684 427 GMEINGDDEDVIRNEVEKLVREMMEGE 453 (504)
Q Consensus 427 G~~l~~~~~~~~~~~l~~ai~~vl~~~ 453 (504)
|..+. .+.+++.+++.++|.|+
T Consensus 274 G~~v~-----~~~~~~~~~ii~~l~~~ 295 (331)
T PHA01630 274 GYFLD-----PDIEDAYQKLLEALANW 295 (331)
T ss_pred ccccC-----CCHHHHHHHHHHHHhCC
Confidence 55444 25688888888988873
No 136
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=95.40 E-value=1.6 Score=43.28 Aligned_cols=103 Identities=13% Similarity=0.046 Sum_probs=69.6
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEe-CCCCCCCCCCCCCCc
Q 010684 11 VHAVCIPSPFQSHIKAMLKLAKLLHHK--GFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEA-IPDGLPASSDESPTA 87 (504)
Q Consensus 11 ~~il~~~~~~~GHi~p~l~LA~~L~~~--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-l~~~~~~~~~~~~~~ 87 (504)
|||+++-..+.||+.=...+.+.|+++ +.+|+|++.+.+.+.++.. |.++-.- ++. ...
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~---------P~vd~vi~~~~--~~~------- 62 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRM---------PEVNEAIPMPL--GHG------- 62 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcC---------CccCEEEeccc--ccc-------
Confidence 589999999999999999999999996 8999999988777766544 2333211 111 000
Q ss_pred ccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEE
Q 010684 88 QDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVL 149 (504)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~lgiP~v~ 149 (504)
... + ....++.+.++.. +||++|.=....-...++...|+|.-.
T Consensus 63 --~~~----~------~~~~~l~~~lr~~------~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 63 --ALE----I------GERRRLGHSLREK------RYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred --hhh----h------HHHHHHHHHHHhc------CCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 000 1 1222445566655 999999655455566777888888655
No 137
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=94.81 E-value=2.5 Score=41.82 Aligned_cols=105 Identities=8% Similarity=0.039 Sum_probs=69.2
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCccchHHHHhhhcCCCCCCCCCee-EEeCCCCCCCCCCCCCCcc
Q 010684 12 HAVCIPSPFQSHIKAMLKLAKLLHHK--GFHITFVNTEFNHRRLLKARGQHSLDGLPSFR-FEAIPDGLPASSDESPTAQ 88 (504)
Q Consensus 12 ~il~~~~~~~GHi~p~l~LA~~L~~~--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~l~~~~~~~~~~~~~~~ 88 (504)
||+++-..+.|++.-...+.+.|+++ +.+|++++.+.+.+.++.. |.++ +..++... ...
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~---------p~vd~vi~~~~~~--------~~~ 63 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSEN---------PDINALYGLDRKK--------AKA 63 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcC---------CCccEEEEeChhh--------hcc
Confidence 58999999999999999999999997 8999999998887766543 2343 22222100 000
Q ss_pred cHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEE
Q 010684 89 DAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVL 149 (504)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~lgiP~v~ 149 (504)
. ...+. ....++..+... ++|++|.-.....+..++...|.|.-+
T Consensus 64 ~----~~~~~------~~~~l~~~lr~~------~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 64 G----ERKLA------NQFHLIKVLRAN------RYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred h----HHHHH------HHHHHHHHHHhC------CCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 0 00111 112344555544 999999655455677888888999755
No 138
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=94.46 E-value=0.45 Score=36.81 Aligned_cols=83 Identities=13% Similarity=0.155 Sum_probs=51.9
Q ss_pred cCCchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Q 010684 388 HCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKG 467 (504)
Q Consensus 388 HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~ 467 (504)
+|-..-+.|++.+|+|+|+-.. ......+ .. |.....- . +.+++.++|..+++|++ ..++-+++..+
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~-~~-~~~~~~~----~-~~~el~~~i~~ll~~~~--~~~~ia~~a~~ 75 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIF-ED-GEHIITY----N-DPEELAEKIEYLLENPE--ERRRIAKNARE 75 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHc-CC-CCeEEEE----C-CHHHHHHHHHHHHCCHH--HHHHHHHHHHH
Confidence 5666789999999999998766 2333333 22 3221111 2 78999999999999983 33333444444
Q ss_pred HHHHHhCCCCChHHHHHHHH
Q 010684 468 LAEEAAAPHGSSSLNLDKLV 487 (504)
Q Consensus 468 ~~~~~~~~~g~~~~~~~~~~ 487 (504)
.+.+ .-+.+..+++++
T Consensus 76 ~v~~----~~t~~~~~~~il 91 (92)
T PF13524_consen 76 RVLK----RHTWEHRAEQIL 91 (92)
T ss_pred HHHH----hCCHHHHHHHHH
Confidence 4442 445566666655
No 139
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=93.95 E-value=0.13 Score=44.04 Aligned_cols=97 Identities=18% Similarity=0.204 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCCCCcccHHHHHHHHHHhhcchH
Q 010684 26 AMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTAQDAYSLGENIINNVLLHP 105 (504)
Q Consensus 26 p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (504)
-+..|+++|.++||+|+++++......-+.. ..++.+..++- +.. ..... .... ...
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~--------~~~~~~~~~~~--~~~---~~~~~----~~~~------~~~ 62 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDEEE--------EDGVRVHRLPL--PRR---PWPLR----LLRF------LRR 62 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-SEE--------ETTEEEEEE----S-S---SSGGG----HCCH------HHH
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCcccccc--------cCCceEEeccC--Ccc---chhhh----hHHH------HHH
Confidence 4678999999999999999965544321110 12677777762 111 00000 0010 112
Q ss_pred HHHHHHHhhcCCCCCCCCeeEEEEcCCcc--hHHHHHHHcCCCeEEEcc
Q 010684 106 FLDLLAKLNDSSNSVNPAVSCIISDGFLP--FTITAAQQLGLPIVLFFT 152 (504)
Q Consensus 106 ~~~ll~~l~~~~~~~~~~~DlvI~D~~~~--~~~~~A~~lgiP~v~~~~ 152 (504)
+..++ ..... +||+|.+..... .+..+....++|+|....
T Consensus 63 ~~~~l-~~~~~------~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 63 LRRLL-AARRE------RPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp HHHHC-HHCT---------SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred HHHHH-hhhcc------CCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 22333 11333 999999887432 233333488999988654
No 140
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=93.92 E-value=0.43 Score=41.80 Aligned_cols=95 Identities=12% Similarity=0.128 Sum_probs=55.8
Q ss_pred hCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCCCCcccHHHHHHHHHHhhcchHHHHHHHHhhc
Q 010684 36 HKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTAQDAYSLGENIINNVLLHPFLDLLAKLND 115 (504)
Q Consensus 36 ~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 115 (504)
++||+|++++........ +|++...+...-... .........+-..+.+ . +.+...+..+++
T Consensus 1 q~gh~v~fl~~~~~~~~~------------~GV~~~~y~~~~~~~---~~~~~~~~~~e~~~~r-g--~av~~a~~~L~~ 62 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP------------PGVRVVRYRPPRGPT---PGTHPYVRDFEAAVLR-G--QAVARAARQLRA 62 (171)
T ss_pred CCCCEEEEEecCCCCCCC------------CCcEEEEeCCCCCCC---CCCCcccccHHHHHHH-H--HHHHHHHHHHHH
Confidence 479999999954443311 277777775422111 1111111222222222 1 234444445554
Q ss_pred CCCCCCCCeeEEEEcCCcchHHHHHHHc-CCCeEEEcc
Q 010684 116 SSNSVNPAVSCIISDGFLPFTITAAQQL-GLPIVLFFT 152 (504)
Q Consensus 116 ~~~~~~~~~DlvI~D~~~~~~~~~A~~l-giP~v~~~~ 152 (504)
. +..||+||+..-.-.++.+-+.+ +.|.+.++=
T Consensus 63 ~----Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 63 Q----GFVPDVIIAHPGWGETLFLKDVFPDAPLIGYFE 96 (171)
T ss_pred c----CCCCCEEEEcCCcchhhhHHHhCCCCcEEEEEE
Confidence 4 34789999999888899999999 899998753
No 141
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=92.80 E-value=10 Score=37.05 Aligned_cols=131 Identities=11% Similarity=-0.056 Sum_probs=74.4
Q ss_pred eeE-EEecCCcc--ccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHhhccCcEEEe--ecchH-hhhcC
Q 010684 306 SVI-YVNFGSFI--FMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVAS--WCPQE-EVLKH 379 (504)
Q Consensus 306 ~~V-~vs~GS~~--~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~--~vpq~-~lL~~ 379 (504)
+.| ++-.||.. ..+.+.+.++++.+.+.+.++++..++... ......+.+. ..++.+.+ .+.+. .++.+
T Consensus 179 ~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~e----~~~~~~i~~~-~~~~~l~g~~sL~elaali~~ 253 (322)
T PRK10964 179 PYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEHE----EQRAKRLAEG-FPYVEVLPKLSLEQVARVLAG 253 (322)
T ss_pred CeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHHH----HHHHHHHHcc-CCcceecCCCCHHHHHHHHHh
Confidence 344 34444433 467778888888887667776544343210 0001111111 12333443 23443 58999
Q ss_pred CCcceEEecCCchhHHHhhhcCCcEEecCCCCCcchhh------hhhhhhcceeEEecCCCCCccHHHHHHHHHHHhc
Q 010684 380 PSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNG------RYVCNEWGVGMEINGDDEDVIRNEVEKLVREMME 451 (504)
Q Consensus 380 ~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na------~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~ 451 (504)
+++ +|+-- .|.++=|...|+|+|++=-..|-..++ ..+ . -++-. . ..++++++.++++++|+
T Consensus 254 a~l--~I~nD-SGp~HlA~A~g~p~valfGpt~p~~~~p~~~~~~~~-~--~~~~c--m--~~I~~e~V~~~~~~~l~ 321 (322)
T PRK10964 254 AKA--VVSVD-TGLSHLTAALDRPNITLYGPTDPGLIGGYGKNQHAC-R--SPGKS--M--ADLSAETVFQKLETLIS 321 (322)
T ss_pred CCE--EEecC-CcHHHHHHHhCCCEEEEECCCCcccccCCCCCceee-c--CCCcc--c--ccCCHHHHHHHHHHHhh
Confidence 998 88754 589999999999999874322221111 111 1 01111 2 47999999999998874
No 142
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=92.44 E-value=8.4 Score=37.97 Aligned_cols=105 Identities=19% Similarity=0.109 Sum_probs=71.9
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCCCCcc
Q 010684 11 VHAVCIPSPFQSHIKAMLKLAKLLHHK--GFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTAQ 88 (504)
Q Consensus 11 ~~il~~~~~~~GHi~p~l~LA~~L~~~--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~ 88 (504)
|+|+++-..+.||+.=.+.+-..|+++ +.+++|++++.+.+.+... |.++-.-.-+. .. +.
T Consensus 2 ~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~---------p~I~~vi~~~~--~~---~~--- 64 (334)
T COG0859 2 MKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLN---------PEIDKVIIIDK--KK---KG--- 64 (334)
T ss_pred ceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcC---------hHhhhhccccc--cc---cc---
Confidence 799999999999999999999999998 5999999998887766543 23321111000 11 10
Q ss_pred cHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEE
Q 010684 89 DAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLF 150 (504)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~lgiP~v~~ 150 (504)
.. ......+.+.+... ++|+||.=.-..-...++..+++|.-.-
T Consensus 65 ------~~------~~~~~~l~~~lr~~------~yD~vidl~~~~ksa~l~~~~~~~~r~g 108 (334)
T COG0859 65 ------LG------LKERLALLRTLRKE------RYDAVIDLQGLLKSALLALLLGIPFRIG 108 (334)
T ss_pred ------cc------hHHHHHHHHHhhcc------CCCEEEECcccHHHHHHHHHhCCCcccc
Confidence 00 23444556666655 8999997766666777777888887663
No 143
>PLN02939 transferase, transferring glycosyl groups
Probab=92.43 E-value=6.1 Score=44.05 Aligned_cols=84 Identities=8% Similarity=0.010 Sum_probs=56.6
Q ss_pred ccCcEEEeecchH---hhhcCCCcceEEec----CCchhHHHhhhcCCcEEecCCCC--Ccchh--hhhhhhhcceeEEe
Q 010684 362 KEKGFVASWCPQE---EVLKHPSIGGFLTH----CGWNSIVESLCSGVPMICWPFTG--DQPTN--GRYVCNEWGVGMEI 430 (504)
Q Consensus 362 ~~nv~~~~~vpq~---~lL~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~--DQ~~n--a~rv~~~~G~G~~l 430 (504)
.++|.+..+.+.. .+++.+|+ ||.- +-..+.+||+++|+|.|+....+ |.-.. ...+.+.-+-|...
T Consensus 836 ~drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf 913 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTF 913 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEe
Confidence 4678888887764 48989998 8853 22358999999999999876644 32211 11111223567776
Q ss_pred cCCCCCccHHHHHHHHHHHhc
Q 010684 431 NGDDEDVIRNEVEKLVREMME 451 (504)
Q Consensus 431 ~~~~~~~~~~~l~~ai~~vl~ 451 (504)
.. -+++.+..+|.+++.
T Consensus 914 ~~----~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 914 LT----PDEQGLNSALERAFN 930 (977)
T ss_pred cC----CCHHHHHHHHHHHHH
Confidence 63 478889999988774
No 144
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=92.18 E-value=11 Score=35.93 Aligned_cols=102 Identities=14% Similarity=0.015 Sum_probs=66.6
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCC--CeEEEEeCccchHHHHhhhcCCCCCCCCCeeE-EeCCCCCCCCCCCCCCcc
Q 010684 12 HAVCIPSPFQSHIKAMLKLAKLLHHKG--FHITFVNTEFNHRRLLKARGQHSLDGLPSFRF-EAIPDGLPASSDESPTAQ 88 (504)
Q Consensus 12 ~il~~~~~~~GHi~p~l~LA~~L~~~G--h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~l~~~~~~~~~~~~~~~ 88 (504)
||+++-..+.|++.-...+.++|+++. -+|++++.+.+.+.++.. +.++- ..++. . .
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~---------p~id~v~~~~~----~----~--- 60 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELM---------PEVDRVIVLPK----K----H--- 60 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcC---------CccCEEEEcCC----c----c---
Confidence 689999999999999999999999974 899999998777766543 23322 12221 0 0
Q ss_pred cHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEE
Q 010684 89 DAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVL 149 (504)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~lgiP~v~ 149 (504)
.... ...+..++..++.. ++|++|.-........++...+++...
T Consensus 61 --------~~~~--~~~~~~~~~~l~~~------~~D~vi~~~~~~~~~~~~~~~~~~~~~ 105 (279)
T cd03789 61 --------GKLG--LGARRRLARALRRR------RYDLAIDLQGSLRSALLPFLAGAPRRI 105 (279)
T ss_pred --------cccc--hHHHHHHHHHHhhc------CCCEEEECCCccHHHHHHHHhCCCeEE
Confidence 0000 12333455555554 899999766555555566677766544
No 145
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=91.75 E-value=0.35 Score=43.55 Aligned_cols=40 Identities=15% Similarity=0.141 Sum_probs=28.0
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchH
Q 010684 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHR 51 (504)
Q Consensus 11 ~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~ 51 (504)
||||+.-=-+. +---+..|+++|.+.||+|++++|...+.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~S 40 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQS 40 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTT
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCc
Confidence 46665544333 33347889999988899999999987664
No 146
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=91.70 E-value=0.72 Score=48.34 Aligned_cols=92 Identities=13% Similarity=0.150 Sum_probs=67.3
Q ss_pred cCcEEEeecch---HhhhcCCCcceEEecC---CchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCC
Q 010684 363 EKGFVASWCPQ---EEVLKHPSIGGFLTHC---GWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDED 436 (504)
Q Consensus 363 ~nv~~~~~vpq---~~lL~~~~~~~~I~HG---G~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~ 436 (504)
..|.+.++... ..++.+.++ +|.=+ |.++..||+.+|+|+| .......| +...=|.-+.
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V-~d~~NG~li~----- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYV-EHNKNGYIID----- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceee-EcCCCcEEeC-----
Confidence 57778888773 247777777 88766 7889999999999999 33334445 5545566664
Q ss_pred ccHHHHHHHHHHHhcCchH-HHHHHHHHHHHHHHH
Q 010684 437 VIRNEVEKLVREMMEGEKG-KQMRNKAMEWKGLAE 470 (504)
Q Consensus 437 ~~~~~l~~ai~~vl~~~~~-~~~~~~a~~l~~~~~ 470 (504)
+.++|.++|..+|.+.+. +.+...+-+.++...
T Consensus 474 -d~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~yS 507 (519)
T TIGR03713 474 -DISELLKALDYYLDNLKNWNYSLAYSIKLIDDYS 507 (519)
T ss_pred -CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence 479999999999999854 566666666666554
No 147
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=91.30 E-value=1.9 Score=44.48 Aligned_cols=103 Identities=10% Similarity=0.094 Sum_probs=69.5
Q ss_pred eecchHh---hhcCCCcceEEe---cCCc-hhHHHhhhcCCc----EEecCCCCCcchhhhhhhhhcceeEEecCCCCCc
Q 010684 369 SWCPQEE---VLKHPSIGGFLT---HCGW-NSIVESLCSGVP----MICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDV 437 (504)
Q Consensus 369 ~~vpq~~---lL~~~~~~~~I~---HGG~-gs~~eal~~GvP----~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~ 437 (504)
+.+++.+ +++.+|+ +|. +=|. .++.||+++|+| +|+--+.+-- ..+ +-|+.++ ..
T Consensus 342 ~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~----~~l----~~gllVn----P~ 407 (456)
T TIGR02400 342 RSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAA----QEL----NGALLVN----PY 407 (456)
T ss_pred CCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCCh----HHh----CCcEEEC----CC
Confidence 4566654 6778888 775 3464 488899999999 6665554321 222 3466666 35
Q ss_pred cHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 010684 438 IRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEIL 491 (504)
Q Consensus 438 ~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 491 (504)
+.++++++|.++|+.+.. ..+++.+++.+.+.. -+...-+++++++|.
T Consensus 408 d~~~lA~aI~~aL~~~~~-er~~r~~~~~~~v~~-----~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 408 DIDGMADAIARALTMPLE-EREERHRAMMDKLRK-----NDVQRWREDFLSDLN 455 (456)
T ss_pred CHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhh
Confidence 789999999999986532 455566666666654 377788888887763
No 148
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=90.85 E-value=17 Score=35.62 Aligned_cols=102 Identities=15% Similarity=0.095 Sum_probs=66.9
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCccchHHHHhhhcCCCCCCCCCeeE-EeCCCCCCCCCCCCCCcc
Q 010684 12 HAVCIPSPFQSHIKAMLKLAKLLHHK--GFHITFVNTEFNHRRLLKARGQHSLDGLPSFRF-EAIPDGLPASSDESPTAQ 88 (504)
Q Consensus 12 ~il~~~~~~~GHi~p~l~LA~~L~~~--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~l~~~~~~~~~~~~~~~ 88 (504)
||+++-..+.|++.=...+.+.|++. +.+|+|++.+.+.+.++.. |.++- ..++. ... .
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~---------p~id~v~~~~~--~~~------~- 62 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERM---------PEIRQAIDMPL--GHG------A- 62 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcC---------chhceeeecCC--ccc------c-
Confidence 58999999999999999999999997 9999999987776655543 23321 11110 000 0
Q ss_pred cHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEE
Q 010684 89 DAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVL 149 (504)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~lgiP~v~ 149 (504)
.. + ....++.+.+... ++|++|.-........++...|+|.-.
T Consensus 63 --~~----~------~~~~~~~~~lr~~------~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 63 --LE----L------TERRRLGRSLREE------RYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred --hh----h------hHHHHHHHHHhhc------CCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 00 1 1112344555544 999999765555666777777888643
No 149
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=90.43 E-value=1.9 Score=37.29 Aligned_cols=29 Identities=24% Similarity=0.422 Sum_probs=23.0
Q ss_pred cccHHHHHHHHHHHHhCCCeEEEEeCccc
Q 010684 21 QSHIKAMLKLAKLLHHKGFHITFVNTEFN 49 (504)
Q Consensus 21 ~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~ 49 (504)
.|=-.-+..|+++|+++||+|+++++...
T Consensus 12 GG~e~~~~~l~~~l~~~G~~v~v~~~~~~ 40 (177)
T PF13439_consen 12 GGAERVVLNLARALAKRGHEVTVVSPGVK 40 (177)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEESS-T
T ss_pred ChHHHHHHHHHHHHHHCCCEEEEEEcCCC
Confidence 36667789999999999999999987543
No 150
>PRK14099 glycogen synthase; Provisional
Probab=89.48 E-value=11 Score=39.20 Aligned_cols=87 Identities=10% Similarity=0.119 Sum_probs=50.3
Q ss_pred hccCc-EEEeecchHh-hh-cCCCcceEEe---cCCch-hHHHhhhcCCcEEecCCCC--Ccchhhhhhhhh--cceeEE
Q 010684 361 AKEKG-FVASWCPQEE-VL-KHPSIGGFLT---HCGWN-SIVESLCSGVPMICWPFTG--DQPTNGRYVCNE--WGVGME 429 (504)
Q Consensus 361 ~~~nv-~~~~~vpq~~-lL-~~~~~~~~I~---HGG~g-s~~eal~~GvP~v~~P~~~--DQ~~na~rv~~~--~G~G~~ 429 (504)
.++++ .+.+|-.... ++ ..+|+ ||. +=|.| +.+||+++|+|.|+.-..+ |--.......+. -+.|..
T Consensus 348 ~~~~v~~~~G~~~~l~~~~~a~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l 425 (485)
T PRK14099 348 YPGQIGVVIGYDEALAHLIQAGADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQ 425 (485)
T ss_pred CCCCEEEEeCCCHHHHHHHHhcCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEE
Confidence 34555 4566633322 33 45777 775 34444 7789999998777765422 322111111011 146777
Q ss_pred ecCCCCCccHHHHHHHHHH---HhcCc
Q 010684 430 INGDDEDVIRNEVEKLVRE---MMEGE 453 (504)
Q Consensus 430 l~~~~~~~~~~~l~~ai~~---vl~~~ 453 (504)
++. -++++++++|.+ +++|+
T Consensus 426 ~~~----~d~~~La~ai~~a~~l~~d~ 448 (485)
T PRK14099 426 FSP----VTADALAAALRKTAALFADP 448 (485)
T ss_pred eCC----CCHHHHHHHHHHHHHHhcCH
Confidence 763 478999999987 56666
No 151
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=89.04 E-value=1.9 Score=44.69 Aligned_cols=104 Identities=14% Similarity=0.199 Sum_probs=63.5
Q ss_pred EEeecchHh---hhcCCCcceEEe---cCCch-hHHHhhhcCCc----EEecCCCCCcchhhhhhhhhcceeEEecCCCC
Q 010684 367 VASWCPQEE---VLKHPSIGGFLT---HCGWN-SIVESLCSGVP----MICWPFTGDQPTNGRYVCNEWGVGMEINGDDE 435 (504)
Q Consensus 367 ~~~~vpq~~---lL~~~~~~~~I~---HGG~g-s~~eal~~GvP----~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~ 435 (504)
+.+++++.+ +++.+|+ +|. +-|.| ++.||+++|+| +|+--..+ -. +...-|+.++
T Consensus 345 ~~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G-~~-------~~~~~g~lv~---- 410 (460)
T cd03788 345 LYRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAG-AA-------EELSGALLVN---- 410 (460)
T ss_pred EeCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEecccc-ch-------hhcCCCEEEC----
Confidence 345777665 6888888 763 44544 77999999999 44432222 11 1112355555
Q ss_pred CccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 010684 436 DVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEI 490 (504)
Q Consensus 436 ~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 490 (504)
..+.++++++|.++|++++. ..+...++..+.+.. -+...-+++++++|
T Consensus 411 p~d~~~la~ai~~~l~~~~~-e~~~~~~~~~~~v~~-----~~~~~w~~~~l~~l 459 (460)
T cd03788 411 PYDIDEVADAIHRALTMPLE-ERRERHRKLREYVRT-----HDVQAWANSFLDDL 459 (460)
T ss_pred CCCHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHh-----CCHHHHHHHHHHhh
Confidence 35789999999999987621 233333444444443 26667777777665
No 152
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=88.29 E-value=7.2 Score=31.74 Aligned_cols=39 Identities=15% Similarity=0.132 Sum_probs=34.2
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccch
Q 010684 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNH 50 (504)
Q Consensus 12 ~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~ 50 (504)
||++.+.++..|.....-++..|.++|++|.+.......
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~ 39 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPP 39 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCH
Confidence 589999999999999999999999999999887754333
No 153
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=87.93 E-value=1.6 Score=36.75 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=40.2
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHHh
Q 010684 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLK 55 (504)
Q Consensus 9 ~~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~ 55 (504)
++.+|++.+.++.+|-.-..-++..|.++|++|+++...-..+.+.+
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~ 48 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFID 48 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 57899999999999999999999999999999999987554444433
No 154
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=87.19 E-value=5.4 Score=35.00 Aligned_cols=116 Identities=19% Similarity=0.139 Sum_probs=60.6
Q ss_pred EEcCCCcccHHHHHHHHHHH-HhC-CCeEEEEeCccch--HHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCCCCcccH
Q 010684 15 CIPSPFQSHIKAMLKLAKLL-HHK-GFHITFVNTEFNH--RRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTAQDA 90 (504)
Q Consensus 15 ~~~~~~~GHi~p~l~LA~~L-~~~-Gh~Vt~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 90 (504)
++-.++-||..=|+.|.+.+ .++ .++..+++..... +.+++...... ...++..++...... ....
T Consensus 2 l~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~----~~~~~~~~~r~r~v~------q~~~ 71 (170)
T PF08660_consen 2 LVVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSS----KRHKILEIPRAREVG------QSYL 71 (170)
T ss_pred EEEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhcc----ccceeeccceEEEec------hhhH
Confidence 34556889999999999999 333 5666666654332 22221100000 011233333211101 1111
Q ss_pred HHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc--hHHHHHHHc------CCCeEEEcc
Q 010684 91 YSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLP--FTITAAQQL------GLPIVLFFT 152 (504)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~--~~~~~A~~l------giP~v~~~~ 152 (504)
...+..+ ..+ ...+.-+.+ + +||+||+..-.. ..+.+|..+ |.+.|.+-+
T Consensus 72 ~~~~~~l-~~~-~~~~~il~r----~------rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES 129 (170)
T PF08660_consen 72 TSIFTTL-RAF-LQSLRILRR----E------RPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIES 129 (170)
T ss_pred hhHHHHH-HHH-HHHHHHHHH----h------CCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEe
Confidence 2222222 111 222333322 2 999999998644 678889999 999988744
No 155
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=86.76 E-value=30 Score=33.00 Aligned_cols=80 Identities=16% Similarity=0.313 Sum_probs=54.4
Q ss_pred cCcEEEeecch---HhhhcCCCcceEEec---CCchh-HHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCC
Q 010684 363 EKGFVASWCPQ---EEVLKHPSIGGFLTH---CGWNS-IVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDE 435 (504)
Q Consensus 363 ~nv~~~~~vpq---~~lL~~~~~~~~I~H---GG~gs-~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~ 435 (504)
+++.+.++++. ..++..+++ ++.- .|.|. +.||+++|+|+|.... ......+ ...+.|. +..
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~----~~~~e~~-~~~~~g~-~~~--- 325 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDV----GGIPEVV-EDGETGL-LVP--- 325 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCC----CChHHHh-cCCCceE-ecC---
Confidence 67888888882 346777777 7666 35544 5999999999966554 3233333 3322466 442
Q ss_pred CccHHHHHHHHHHHhcCc
Q 010684 436 DVIRNEVEKLVREMMEGE 453 (504)
Q Consensus 436 ~~~~~~l~~ai~~vl~~~ 453 (504)
..+.+++..++..++++.
T Consensus 326 ~~~~~~~~~~i~~~~~~~ 343 (381)
T COG0438 326 PGDVEELADALEQLLEDP 343 (381)
T ss_pred CCCHHHHHHHHHHHhcCH
Confidence 227899999999999887
No 156
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=86.62 E-value=7.1 Score=36.67 Aligned_cols=41 Identities=20% Similarity=0.176 Sum_probs=28.9
Q ss_pred CCCcEEEEEcCCCcccHH-HHHHHHHHHHhCCCeEEEEeCccchH
Q 010684 8 CSKVHAVCIPSPFQSHIK-AMLKLAKLLHHKGFHITFVNTEFNHR 51 (504)
Q Consensus 8 ~~~~~il~~~~~~~GHi~-p~l~LA~~L~~~Gh~Vt~~~~~~~~~ 51 (504)
.++||||+.-= .|--. -+.+|+++|.+.| +|++++|...+.
T Consensus 3 ~~~M~ILltND--DGi~a~Gi~aL~~~l~~~g-~V~VvAP~~~~S 44 (257)
T PRK13932 3 DKKPHILVCND--DGIEGEGIHVLAASMKKIG-RVTVVAPAEPHS 44 (257)
T ss_pred CCCCEEEEECC--CCCCCHHHHHHHHHHHhCC-CEEEEcCCCCCC
Confidence 34788886543 33333 4778899998888 799999877654
No 157
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.35 E-value=2.4 Score=40.19 Aligned_cols=94 Identities=15% Similarity=0.107 Sum_probs=59.2
Q ss_pred cCcEE-EeecchHhhhcCCCcceEEecCCchhHHH-hhhcCCcEEecCCCCCcch--hhhhhhhhcceeEEecCCCCCcc
Q 010684 363 EKGFV-ASWCPQEEVLKHPSIGGFLTHCGWNSIVE-SLCSGVPMICWPFTGDQPT--NGRYVCNEWGVGMEINGDDEDVI 438 (504)
Q Consensus 363 ~nv~~-~~~vpq~~lL~~~~~~~~I~HGG~gs~~e-al~~GvP~v~~P~~~DQ~~--na~rv~~~~G~G~~l~~~~~~~~ 438 (504)
+|..+ .+|-...++|.++++ .|-- +||..| ++--|+|+|.+|-.+-|+. .|.|-..-+|+.+.+-. ..
T Consensus 294 dnc~l~lsqqsfadiLH~ada--algm--AGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~----~~ 365 (412)
T COG4370 294 DNCSLWLSQQSFADILHAADA--ALGM--AGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR----PE 365 (412)
T ss_pred CceEEEEeHHHHHHHHHHHHH--HHHh--ccchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC----Cc
Confidence 34444 345555667777776 5433 344444 5788999999999999965 55554345677777763 23
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHH
Q 010684 439 RNEVEKLVREMMEGEKGKQMRNKAMEWKG 467 (504)
Q Consensus 439 ~~~l~~ai~~vl~~~~~~~~~~~a~~l~~ 467 (504)
+..-..+.+++|.|+ .+...+++=..
T Consensus 366 aq~a~~~~q~ll~dp---~r~~air~nGq 391 (412)
T COG4370 366 AQAAAQAVQELLGDP---QRLTAIRHNGQ 391 (412)
T ss_pred hhhHHHHHHHHhcCh---HHHHHHHhcch
Confidence 333344445599999 67776664433
No 158
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=85.17 E-value=7.7 Score=35.09 Aligned_cols=45 Identities=16% Similarity=0.107 Sum_probs=37.9
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHH
Q 010684 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRL 53 (504)
Q Consensus 9 ~~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~ 53 (504)
++.+|++.+.++..|-....-++..|.++|++|+++...-..+.+
T Consensus 81 ~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l 125 (201)
T cd02070 81 KKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEF 125 (201)
T ss_pred CCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 367999999999999999999999999999999988755433333
No 159
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=85.12 E-value=9.1 Score=38.02 Aligned_cols=106 Identities=13% Similarity=0.102 Sum_probs=70.0
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCccchHHHHhhhcCCCCCCCCCeeE-EeCCCCCCCCCCCCCC
Q 010684 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHK--GFHITFVNTEFNHRRLLKARGQHSLDGLPSFRF-EAIPDGLPASSDESPT 86 (504)
Q Consensus 10 ~~~il~~~~~~~GHi~p~l~LA~~L~~~--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~l~~~~~~~~~~~~~ 86 (504)
.+||+++-..+.|++.=...+.+.|+++ +.+|++++.+.+.+.++.. |.++- ..++.. ..
T Consensus 5 ~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~---------P~id~vi~~~~~--~~------ 67 (352)
T PRK10422 5 FRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSEN---------PEINALYGIKNK--KA------ 67 (352)
T ss_pred CceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccC---------CCceEEEEeccc--cc------
Confidence 6799999999999999999999999997 8999999998877765533 23331 222210 00
Q ss_pred cccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEE
Q 010684 87 AQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVL 149 (504)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~lgiP~v~ 149 (504)
. ....+ ..+..+++.+... +||++|.-........++...|.|..+
T Consensus 68 --~---~~~~~------~~~~~l~~~lr~~------~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 68 --G---ASEKI------KNFFSLIKVLRAN------KYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred --c---HHHHH------HHHHHHHHHHhhC------CCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 0 00111 1222445566655 999999654444556677777888755
No 160
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=84.38 E-value=3 Score=41.71 Aligned_cols=112 Identities=15% Similarity=0.128 Sum_probs=66.2
Q ss_pred ccCcEEEe-ecchHhhhcCCCcceEEecCCchhHHHhhhcCCcEEecCCCCCcchhhhhhh---hhcceeEEecCCCCCc
Q 010684 362 KEKGFVAS-WCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVC---NEWGVGMEINGDDEDV 437 (504)
Q Consensus 362 ~~nv~~~~-~vpq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~---~~~G~G~~l~~~~~~~ 437 (504)
.+++..++ ..+-.++|..+++ +||=-. +.+.|.+..++|+|....-.|.....+.+- +....|... -
T Consensus 251 ~~~i~~~~~~~~~~~ll~~aDi--LITDyS-Si~fD~~~l~KPiify~~D~~~Y~~~rg~~~~~~~~~pg~~~------~ 321 (369)
T PF04464_consen 251 NSNIIFVSDNEDIYDLLAAADI--LITDYS-SIIFDFLLLNKPIIFYQPDLEEYEKERGFYFDYEEDLPGPIV------Y 321 (369)
T ss_dssp TTTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTTSSBSS-TTTSSSS-EE------S
T ss_pred CCcEEECCCCCCHHHHHHhcCE--EEEech-hHHHHHHHhCCCEEEEeccHHHHhhccCCCCchHhhCCCcee------C
Confidence 35666654 4567789999999 999884 589999999999998876665553321110 122223332 3
Q ss_pred cHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHH
Q 010684 438 IRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKL 486 (504)
Q Consensus 438 ~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~ 486 (504)
+.++|.++|.+++++++ .++++.+++.+++-.. .+|.+...+.+.
T Consensus 322 ~~~eL~~~i~~~~~~~~--~~~~~~~~~~~~~~~~--~Dg~s~eri~~~ 366 (369)
T PF04464_consen 322 NFEELIEAIENIIENPD--EYKEKREKFRDKFFKY--NDGNSSERIVNY 366 (369)
T ss_dssp SHHHHHHHHTTHHHHHH--HTHHHHHHHHHHHSTT----S-HHHHHHHH
T ss_pred CHHHHHHHHHhhhhCCH--HHHHHHHHHHHHhCCC--CCchHHHHHHHH
Confidence 57999999999998663 4566677777777543 344444444433
No 161
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=83.43 E-value=5 Score=42.20 Aligned_cols=79 Identities=15% Similarity=0.106 Sum_probs=49.1
Q ss_pred chHhhhcCCCcceEEe---cCCch-hHHHhhhcCCcEEecCCCCCcchhhhhhhhhc-ceeEEecCCCC---CccHHHHH
Q 010684 372 PQEEVLKHPSIGGFLT---HCGWN-SIVESLCSGVPMICWPFTGDQPTNGRYVCNEW-GVGMEINGDDE---DVIRNEVE 443 (504)
Q Consensus 372 pq~~lL~~~~~~~~I~---HGG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~-G~G~~l~~~~~---~~~~~~l~ 443 (504)
+..++++.|++ +|. +=|+| ++.||+++|+|+|+....+=- .+...++..- ..|+.+..++. .-+.++|+
T Consensus 467 ~y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~-~~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~La 543 (590)
T cd03793 467 DYEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFG-CFMEEHIEDPESYGIYIVDRRFKSPDESVQQLT 543 (590)
T ss_pred chHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchh-hhhHHHhccCCCceEEEecCCccchHHHHHHHH
Confidence 35567777888 665 45544 899999999999998774311 1112221221 24666652111 34568888
Q ss_pred HHHHHHhcCc
Q 010684 444 KLVREMMEGE 453 (504)
Q Consensus 444 ~ai~~vl~~~ 453 (504)
++|.++++.+
T Consensus 544 ~~m~~~~~~~ 553 (590)
T cd03793 544 QYMYEFCQLS 553 (590)
T ss_pred HHHHHHhCCc
Confidence 9999988655
No 162
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=83.09 E-value=32 Score=35.33 Aligned_cols=123 Identities=8% Similarity=0.096 Sum_probs=78.7
Q ss_pred CCeeEEEecCCccccCHHHHHHHHHHHHhCCC-CEEEEEcCCCCCCCCCCCchHHH--HhhccCcEEEe-ecc-h-Hhhh
Q 010684 304 PKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNH-PFLWIIRPDLVTGETADLPAEFE--VKAKEKGFVAS-WCP-Q-EEVL 377 (504)
Q Consensus 304 ~~~~V~vs~GS~~~~~~~~~~~~~~a~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~--~~~~~nv~~~~-~vp-q-~~lL 377 (504)
...++++| +.+.++.+....++++. .|=...+.. ..+.+. ++. +|+.+.. +.+ . .+++
T Consensus 282 ~~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~te--------~s~kL~~L~~y-~nvvly~~~~~~~l~~ly 345 (438)
T TIGR02919 282 RKQALILT-------NSDQIEHLEEIVQALPDYHFHIAALTE--------MSSKLMSLDKY-DNVKLYPNITTQKIQELY 345 (438)
T ss_pred cccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecCc--------ccHHHHHHHhc-CCcEEECCcChHHHHHHH
Confidence 44577776 25666666666666653 332222222 112221 233 6777765 666 3 3699
Q ss_pred cCCCcceEEecCC--chhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCc
Q 010684 378 KHPSIGGFLTHCG--WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE 453 (504)
Q Consensus 378 ~~~~~~~~I~HGG--~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~ 453 (504)
..|++=+-|.||+ ..++.||+.+|+|++..=...... ..+ .. |.-.. .-+.++++++|.++|+++
T Consensus 346 ~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~---~~i-~~---g~l~~----~~~~~~m~~~i~~lL~d~ 412 (438)
T TIGR02919 346 QTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNR---DFI-AS---ENIFE----HNEVDQLISKLKDLLNDP 412 (438)
T ss_pred HhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCc---ccc-cC---Cceec----CCCHHHHHHHHHHHhcCH
Confidence 9999977788876 569999999999999876543221 222 22 33333 346799999999999988
No 163
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=81.83 E-value=21 Score=32.15 Aligned_cols=47 Identities=13% Similarity=0.142 Sum_probs=39.7
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHHh
Q 010684 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLK 55 (504)
Q Consensus 9 ~~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~ 55 (504)
.+.+|++.+.++..|-....-++..|..+|++|+++...-..+.+.+
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~ 129 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVE 129 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHH
Confidence 45799999999999999999999999999999999987654444433
No 164
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=81.35 E-value=2.6 Score=34.51 Aligned_cols=38 Identities=11% Similarity=0.189 Sum_probs=26.7
Q ss_pred cEEEEEcCCCcc---cHHHHHHHHHHHHhCCCeEEEEeCcc
Q 010684 11 VHAVCIPSPFQS---HIKAMLKLAKLLHHKGFHITFVNTEF 48 (504)
Q Consensus 11 ~~il~~~~~~~G---Hi~p~l~LA~~L~~~Gh~Vt~~~~~~ 48 (504)
|||+|+--|-.+ .-.-.++|+.+-.+|||+|.+++...
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~d 41 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGD 41 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGG
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCc
Confidence 688888877554 33568899999999999999998754
No 165
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=81.22 E-value=7.6 Score=36.90 Aligned_cols=80 Identities=15% Similarity=0.088 Sum_probs=49.9
Q ss_pred HHHHHHHHHhC-CCCEEEEEcCCCCCCCCCCCchHHHHhh---ccCcEEEeecchHhhhcCCCcceEEecCCchhHHHhh
Q 010684 323 LIEVAMGLVNS-NHPFLWIIRPDLVTGETADLPAEFEVKA---KEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESL 398 (504)
Q Consensus 323 ~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~nv~~~~~vpq~~lL~~~~~~~~I~HGG~gs~~eal 398 (504)
...+...++.. +.+++++.-...... ...++.... ...+.+.+-++-.++|.+++. |||-.+ .+-.||+
T Consensus 143 ~~~l~~~~~~~p~~~lvvK~HP~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~s~~--VvtinS-tvGlEAl 215 (269)
T PF05159_consen 143 LDMLESFAKENPDAKLVVKPHPDERGG----NKYSYLEELPNLPNVVIIDDDVNLYELLEQSDA--VVTINS-TVGLEAL 215 (269)
T ss_pred HHHHHHHHHHCCCCEEEEEECchhhCC----CChhHhhhhhcCCCeEEECCCCCHHHHHHhCCE--EEEECC-HHHHHHH
Confidence 34444444444 567777765421111 011222222 233444556788899999998 888876 5889999
Q ss_pred hcCCcEEecCC
Q 010684 399 CSGVPMICWPF 409 (504)
Q Consensus 399 ~~GvP~v~~P~ 409 (504)
.+|+|++++..
T Consensus 216 l~gkpVi~~G~ 226 (269)
T PF05159_consen 216 LHGKPVIVFGR 226 (269)
T ss_pred HcCCceEEecC
Confidence 99999999875
No 166
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=80.37 E-value=3 Score=34.71 Aligned_cols=45 Identities=13% Similarity=0.072 Sum_probs=36.7
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHHhh
Q 010684 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKA 56 (504)
Q Consensus 11 ~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~ 56 (504)
|||++...|+.+=+. ...+.++|.++|++|.++.++.-...+...
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~ 45 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTPE 45 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhhh
Confidence 589999999887777 999999999999999999987766655554
No 167
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=80.04 E-value=9.2 Score=42.54 Aligned_cols=101 Identities=13% Similarity=0.095 Sum_probs=66.6
Q ss_pred hhhcCCCcceEEec---CCch-hHHHhhhcCCc---EEecCCCCCcchhhhhhhhhcc-eeEEecCCCCCccHHHHHHHH
Q 010684 375 EVLKHPSIGGFLTH---CGWN-SIVESLCSGVP---MICWPFTGDQPTNGRYVCNEWG-VGMEINGDDEDVIRNEVEKLV 446 (504)
Q Consensus 375 ~lL~~~~~~~~I~H---GG~g-s~~eal~~GvP---~v~~P~~~DQ~~na~rv~~~~G-~G~~l~~~~~~~~~~~l~~ai 446 (504)
.++..+++ ||.- -|.| ++.|++++|+| ++++.-++- .+ +.+| -|+.++. .+.++++++|
T Consensus 371 aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G---~~----~~l~~~allVnP----~D~~~lA~AI 437 (797)
T PLN03063 371 ALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAG---AG----QSLGAGALLVNP----WNITEVSSAI 437 (797)
T ss_pred HHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCCcC---ch----hhhcCCeEEECC----CCHHHHHHHH
Confidence 47778888 7644 4766 77799999999 555553221 11 1233 4666663 6889999999
Q ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHhcC
Q 010684 447 REMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEILLSN 494 (504)
Q Consensus 447 ~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 494 (504)
.++|+.++. ..+++.+++.+.+... +...-.++|++.+.+..
T Consensus 438 ~~aL~m~~~-er~~r~~~~~~~v~~~-----~~~~Wa~~fl~~l~~~~ 479 (797)
T PLN03063 438 KEALNMSDE-ERETRHRHNFQYVKTH-----SAQKWADDFMSELNDII 479 (797)
T ss_pred HHHHhCCHH-HHHHHHHHHHHhhhhC-----CHHHHHHHHHHHHHHHh
Confidence 999983321 3455566666666643 66777788888776543
No 168
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=79.04 E-value=6.3 Score=37.16 Aligned_cols=35 Identities=17% Similarity=0.069 Sum_probs=24.7
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccch
Q 010684 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNH 50 (504)
Q Consensus 11 ~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~ 50 (504)
|+|+++- +.|. -..|++.|.++||+|+..+...+.
T Consensus 1 m~ILvlG--GT~e---gr~la~~L~~~g~~v~~s~~t~~~ 35 (256)
T TIGR00715 1 MTVLLMG--GTVD---SRAIAKGLIAQGIEILVTVTTSEG 35 (256)
T ss_pred CeEEEEe--chHH---HHHHHHHHHhCCCeEEEEEccCCc
Confidence 4555543 3343 678999999999999987765543
No 169
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=77.77 E-value=64 Score=32.18 Aligned_cols=61 Identities=23% Similarity=0.210 Sum_probs=37.2
Q ss_pred EEecCCchhHHHhhhcCCcEEecCC---CCCcc------hhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCc
Q 010684 385 FLTHCGWNSIVESLCSGVPMICWPF---TGDQP------TNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE 453 (504)
Q Consensus 385 ~I~HGG~gs~~eal~~GvP~v~~P~---~~DQ~------~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~ 453 (504)
+-|+ |+.++..|+.+|.|+- +|. .+|-- .|+-+++..+-.... -++.+++..+|.++++++
T Consensus 248 VEt~-~a~~f~~sl~~g~~V~-lp~i~s~AdglaV~~Vg~~tf~~a~~~~d~vv------vV~~~ei~aaI~~l~ede 317 (457)
T KOG1250|consen 248 VETE-GAHSFNASLKAGKPVT-LPKITSLADGLAVKTVGENTFELAQKLVDRVV------VVEDDEIAAAILRLFEDE 317 (457)
T ss_pred Eeec-CcHHHHHHHhcCCeee-cccccchhcccccchhhHHHHHHHHhcCceEE------EeccHHHHHHHHHHHHhh
Confidence 5554 4678999999999873 343 23321 233343222122222 356799999999999877
No 170
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=77.67 E-value=23 Score=33.24 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=19.3
Q ss_pred HHHHHHHHHhCCCeEEEEeCccchH
Q 010684 27 MLKLAKLLHHKGFHITFVNTEFNHR 51 (504)
Q Consensus 27 ~l~LA~~L~~~Gh~Vt~~~~~~~~~ 51 (504)
+.+|+++|++ +|+|++++|...+.
T Consensus 16 l~aL~~~l~~-~~~V~VvAP~~~~S 39 (253)
T PRK13933 16 INTLAELLSK-YHEVIIVAPENQRS 39 (253)
T ss_pred HHHHHHHHHh-CCcEEEEccCCCCc
Confidence 7788888865 68999999877665
No 171
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=77.39 E-value=7.4 Score=36.52 Aligned_cols=35 Identities=14% Similarity=0.187 Sum_probs=24.3
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchH
Q 010684 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHR 51 (504)
Q Consensus 11 ~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~ 51 (504)
|||+++..-+.| ..||+.|.++|+ |++-+.-.+..
T Consensus 1 m~ILvlgGTtE~-----r~la~~L~~~g~-v~~sv~t~~g~ 35 (249)
T PF02571_consen 1 MKILVLGGTTEG-----RKLAERLAEAGY-VIVSVATSYGG 35 (249)
T ss_pred CEEEEEechHHH-----HHHHHHHHhcCC-EEEEEEhhhhH
Confidence 578877665555 479999999998 66544444443
No 172
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=76.92 E-value=49 Score=29.69 Aligned_cols=40 Identities=10% Similarity=0.251 Sum_probs=30.9
Q ss_pred CcEEEEEcCC--CcccHHHHHHHHHHHHhCCCeEEEEeCccc
Q 010684 10 KVHAVCIPSP--FQSHIKAMLKLAKLLHHKGFHITFVNTEFN 49 (504)
Q Consensus 10 ~~~il~~~~~--~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~ 49 (504)
++|++.++.+ +.|-..-...||..|+++|++|.++-....
T Consensus 16 ~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~ 57 (204)
T TIGR01007 16 EIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMR 57 (204)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 3666666654 457888899999999999999999865433
No 173
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=76.90 E-value=5.1 Score=36.34 Aligned_cols=43 Identities=9% Similarity=0.166 Sum_probs=34.7
Q ss_pred EEEEEcCC--CcccHHHHHHHHHHHHhCCCeEEEEeCc---cchHHHH
Q 010684 12 HAVCIPSP--FQSHIKAMLKLAKLLHHKGFHITFVNTE---FNHRRLL 54 (504)
Q Consensus 12 ~il~~~~~--~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~---~~~~~~~ 54 (504)
+|+++|+| +-|-......|+-.|+++|+.|.++-.. .|.+.+.
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNLDlim 50 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIM 50 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCchhhhhhh
Confidence 67778876 5599999999999999999999998754 3455444
No 174
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=76.24 E-value=60 Score=29.35 Aligned_cols=149 Identities=11% Similarity=0.065 Sum_probs=82.3
Q ss_pred ccCCCCCeeEEEecCCccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHhhc-cCcEEEeecchHhhh
Q 010684 299 LDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAK-EKGFVASWCPQEEVL 377 (504)
Q Consensus 299 l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~nv~~~~~vpq~~lL 377 (504)
++-. +++++.|+.|.++ ...++.|...|..+.++-. . +...+.+..+ ..+.......+..-+
T Consensus 6 l~l~-~k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VIs~-~--------~~~~l~~l~~~~~i~~~~~~~~~~~l 68 (202)
T PRK06718 6 IDLS-NKRVVIVGGGKVA-------GRRAITLLKYGAHIVVISP-E--------LTENLVKLVEEGKIRWKQKEFEPSDI 68 (202)
T ss_pred EEcC-CCEEEEECCCHHH-------HHHHHHHHHCCCeEEEEcC-C--------CCHHHHHHHhCCCEEEEecCCChhhc
Confidence 4443 5679999888665 3344555666766655422 2 2223222222 234444444445567
Q ss_pred cCCCcceEEecCCchhHHHhhh----cCCcEEecCCCCCcchhh-----hhhhhhcceeEEecCC-CCCccHHHHHHHHH
Q 010684 378 KHPSIGGFLTHCGWNSIVESLC----SGVPMICWPFTGDQPTNG-----RYVCNEWGVGMEINGD-DEDVIRNEVEKLVR 447 (504)
Q Consensus 378 ~~~~~~~~I~HGG~gs~~eal~----~GvP~v~~P~~~DQ~~na-----~rv~~~~G~G~~l~~~-~~~~~~~~l~~ai~ 447 (504)
..+++ ||.--+.-.+.+.++ .|+++-++ |.+..+ ..+ ++-++-+.+.+. ....-...|++.|.
T Consensus 69 ~~adl--ViaaT~d~elN~~i~~~a~~~~lvn~~----d~~~~~~f~~Pa~~-~~g~l~iaIsT~G~sP~la~~lr~~ie 141 (202)
T PRK06718 69 VDAFL--VIAATNDPRVNEQVKEDLPENALFNVI----TDAESGNVVFPSAL-HRGKLTISVSTDGASPKLAKKIRDELE 141 (202)
T ss_pred CCceE--EEEcCCCHHHHHHHHHHHHhCCcEEEC----CCCccCeEEEeeEE-EcCCeEEEEECCCCChHHHHHHHHHHH
Confidence 77887 888877776666654 45655443 433322 333 333444444430 12233466777777
Q ss_pred HHhcCchHHHHHHHHHHHHHHHHHH
Q 010684 448 EMMEGEKGKQMRNKAMEWKGLAEEA 472 (504)
Q Consensus 448 ~vl~~~~~~~~~~~a~~l~~~~~~~ 472 (504)
+++ .++-+.+-+.+.++++.+++.
T Consensus 142 ~~~-~~~~~~~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 142 ALY-DESYESYIDFLYECRQKIKEL 165 (202)
T ss_pred HHc-chhHHHHHHHHHHHHHHHHHh
Confidence 776 333346777888888888763
No 175
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=76.00 E-value=31 Score=32.46 Aligned_cols=37 Identities=14% Similarity=-0.031 Sum_probs=30.8
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccc
Q 010684 13 AVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFN 49 (504)
Q Consensus 13 il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~ 49 (504)
+++..-|+.|.......+|..+++.|++|.++.....
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 3444456779999999999999999999999987654
No 176
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=75.35 E-value=15 Score=34.37 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhCCCeEEEEeCccchHH
Q 010684 26 AMLKLAKLLHHKGFHITFVNTEFNHRR 52 (504)
Q Consensus 26 p~l~LA~~L~~~Gh~Vt~~~~~~~~~~ 52 (504)
-+.+|+++|++.| +|+++.|...+..
T Consensus 15 Gi~aL~~~l~~~g-~V~VvAP~~~~Sg 40 (244)
T TIGR00087 15 GIRALYQALKELG-EVTVVAPARQRSG 40 (244)
T ss_pred hHHHHHHHHHhCC-CEEEEeCCCCccc
Confidence 3678899999888 8999998776653
No 177
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=75.30 E-value=8.5 Score=28.86 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=32.0
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEE
Q 010684 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFV 44 (504)
Q Consensus 10 ~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~ 44 (504)
..-++++..+...|...+-.+|+.|.++|+.|..+
T Consensus 15 ~k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 46888999999999999999999999999999855
No 178
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=73.73 E-value=36 Score=26.00 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=19.8
Q ss_pred HHHHHHHHHhCCCeEEEEeCccchHHHHhh
Q 010684 27 MLKLAKLLHHKGFHITFVNTEFNHRRLLKA 56 (504)
Q Consensus 27 ~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~ 56 (504)
++.+++.|.+.|+++. +|. .-...+++.
T Consensus 2 ~~~~~~~l~~lG~~i~-AT~-gTa~~L~~~ 29 (90)
T smart00851 2 LVELAKRLAELGFELV-ATG-GTAKFLREA 29 (90)
T ss_pred HHHHHHHHHHCCCEEE-Ecc-HHHHHHHHC
Confidence 4689999999999994 554 344555544
No 179
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=73.73 E-value=9.5 Score=30.96 Aligned_cols=43 Identities=21% Similarity=0.316 Sum_probs=35.3
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHH
Q 010684 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRL 53 (504)
Q Consensus 11 ~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~ 53 (504)
.|+++.+.+..-|-.-...+|..|.++||+|.++......+.+
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l 43 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVPPEEL 43 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHH
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCCHHHH
Confidence 4789999999999999999999999999999998654433333
No 180
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=71.29 E-value=29 Score=34.12 Aligned_cols=101 Identities=17% Similarity=0.278 Sum_probs=63.8
Q ss_pred CcEEEEEcCCCcc-----cHHHHHHHHHHHHhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCC
Q 010684 10 KVHAVCIPSPFQS-----HIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDES 84 (504)
Q Consensus 10 ~~~il~~~~~~~G-----Hi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~ 84 (504)
+..|+|.|..+.| ...=+..|++.|.++|.+|.+..++...+..++... .+ +.. .
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~--------~~---------~~~---~ 234 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAK--------GL---------PNA---V 234 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHH--------hc---------CCc---c
Confidence 4678888873442 334589999999999999999888754444433310 00 000 0
Q ss_pred CCcccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEcccc
Q 010684 85 PTAQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTIS 154 (504)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~lgiP~v~~~~~~ 154 (504)
. +.. ...+.++...+. +.|++|+.. .+...+|..+|.|+|.++..+
T Consensus 235 -~----------l~~---k~sL~e~~~li~--------~a~l~I~~D--Sg~~HlAaA~~~P~I~iyg~t 280 (334)
T COG0859 235 -I----------LAG---KTSLEELAALIA--------GADLVIGND--SGPMHLAAALGTPTIALYGPT 280 (334)
T ss_pred -c----------cCC---CCCHHHHHHHHh--------cCCEEEccC--ChHHHHHHHcCCCEEEEECCC
Confidence 0 111 234444444443 568988763 478899999999999987554
No 181
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=71.19 E-value=66 Score=30.48 Aligned_cols=38 Identities=13% Similarity=0.110 Sum_probs=29.9
Q ss_pred CCcEEEEEcCC--CcccHHHHHHHHHHHHhCCCeEEEEeC
Q 010684 9 SKVHAVCIPSP--FQSHIKAMLKLAKLLHHKGFHITFVNT 46 (504)
Q Consensus 9 ~~~~il~~~~~--~~GHi~p~l~LA~~L~~~Gh~Vt~~~~ 46 (504)
.+.|++.++.+ +-|-..-...||..|++.|++|.++=.
T Consensus 101 ~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~ 140 (274)
T TIGR03029 101 EGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDA 140 (274)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 35566666665 447778889999999999999999854
No 182
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=70.64 E-value=12 Score=32.29 Aligned_cols=55 Identities=16% Similarity=0.176 Sum_probs=43.4
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCC
Q 010684 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIP 74 (504)
Q Consensus 10 ~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 74 (504)
.|+|++.-.|+-|-..-.+.+++.|.+.|+.|-=+-++.-++.-... ||+..++.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~----------GF~Ivdl~ 59 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRI----------GFKIVDLA 59 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEe----------eeEEEEcc
Confidence 68999999999999999999999999999999755555444322211 78888886
No 183
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=69.69 E-value=41 Score=34.52 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=22.4
Q ss_pred CeeEEEEcCCcchHHHHHHHcCCCeEEEc
Q 010684 123 AVSCIISDGFLPFTITAAQQLGLPIVLFF 151 (504)
Q Consensus 123 ~~DlvI~D~~~~~~~~~A~~lgiP~v~~~ 151 (504)
+||++|... ....+|+++|||++.+.
T Consensus 377 ~pDliiG~s---~~~~~a~~~gip~v~~~ 402 (435)
T cd01974 377 PVDLLIGNT---YGKYIARDTDIPLVRFG 402 (435)
T ss_pred CCCEEEECc---cHHHHHHHhCCCEEEee
Confidence 899999987 36789999999998764
No 184
>PRK11519 tyrosine kinase; Provisional
Probab=69.41 E-value=89 Score=34.52 Aligned_cols=39 Identities=8% Similarity=0.220 Sum_probs=32.1
Q ss_pred CcEEEEEcC--CCcccHHHHHHHHHHHHhCCCeEEEEeCcc
Q 010684 10 KVHAVCIPS--PFQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (504)
Q Consensus 10 ~~~il~~~~--~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~ 48 (504)
+.|+++++. |+-|-..-...||..|++.|++|.++-...
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dl 565 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDM 565 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 557777776 456888889999999999999999997543
No 185
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=69.33 E-value=75 Score=27.49 Aligned_cols=98 Identities=11% Similarity=0.062 Sum_probs=57.9
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEE---EeCc-cchH-HHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCCCC
Q 010684 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITF---VNTE-FNHR-RLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPT 86 (504)
Q Consensus 12 ~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~---~~~~-~~~~-~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~ 86 (504)
-|.+++..+.|-....+.+|-..+.+|++|.+ +-.. ...+ .+.+. .+++.+.....++.-. .
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~--------l~~v~~~~~g~~~~~~---~-- 70 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALER--------LPNIEIHRMGRGFFWT---T-- 70 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHh--------CCCcEEEECCCCCccC---C--
Confidence 47788888999999999999999999999999 4332 1111 11111 2478877776544322 1
Q ss_pred cccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc
Q 010684 87 AQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLP 134 (504)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~ 134 (504)
.+...-.... ...++...+.+... .+|+||-|-+..
T Consensus 71 -~~~~~~~~~a-----~~~~~~a~~~~~~~------~~dLlVLDEi~~ 106 (159)
T cd00561 71 -ENDEEDIAAA-----AEGWAFAKEAIASG------EYDLVILDEINY 106 (159)
T ss_pred -CChHHHHHHH-----HHHHHHHHHHHhcC------CCCEEEEechHh
Confidence 1111212222 22333333333333 899999998765
No 186
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=69.22 E-value=4.5 Score=36.04 Aligned_cols=39 Identities=15% Similarity=0.196 Sum_probs=26.8
Q ss_pred CcEEEEEcCCCcccHHH------------HHHHHHHHHhCCCeEEEEeCcc
Q 010684 10 KVHAVCIPSPFQSHIKA------------MLKLAKLLHHKGFHITFVNTEF 48 (504)
Q Consensus 10 ~~~il~~~~~~~GHi~p------------~l~LA~~L~~~Gh~Vt~~~~~~ 48 (504)
.+||++...|++-.+.| ...||+++.++|++|+++..+.
T Consensus 3 gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 3 GKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp T-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 45666666666555543 5789999999999999999864
No 187
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=68.70 E-value=13 Score=41.02 Aligned_cols=112 Identities=10% Similarity=0.034 Sum_probs=67.8
Q ss_pred EEEeecchHh---hhcCCCcceEEec---CC-chhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCcc
Q 010684 366 FVASWCPQEE---VLKHPSIGGFLTH---CG-WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVI 438 (504)
Q Consensus 366 ~~~~~vpq~~---lL~~~~~~~~I~H---GG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~ 438 (504)
++.+++++.+ +++.+|+ +|.- -| ..++.|++.+|+|-...|+..+--.-+..+ .-|+.++. .+
T Consensus 345 ~~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l----~~~llv~P----~d 414 (726)
T PRK14501 345 YFYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAEL----AEALLVNP----ND 414 (726)
T ss_pred EEeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhHHh----CcCeEECC----CC
Confidence 3456778765 6777888 6653 24 448899999977522222211110111112 22666663 57
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHhc
Q 010684 439 RNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEILLS 493 (504)
Q Consensus 439 ~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 493 (504)
.++++++|.++|+.++. ..+++.+++.+.+.. -+...-++++++.+.+.
T Consensus 415 ~~~la~ai~~~l~~~~~-e~~~r~~~~~~~v~~-----~~~~~w~~~~l~~l~~~ 463 (726)
T PRK14501 415 IEGIAAAIKRALEMPEE-EQRERMQAMQERLRR-----YDVHKWASDFLDELREA 463 (726)
T ss_pred HHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHH
Confidence 89999999999986522 344455556666543 36777788888877765
No 188
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=68.43 E-value=27 Score=32.82 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhCCCeEEEEeCccchH
Q 010684 26 AMLKLAKLLHHKGFHITFVNTEFNHR 51 (504)
Q Consensus 26 p~l~LA~~L~~~Gh~Vt~~~~~~~~~ 51 (504)
-+.+|+++|++ +|+|++++|...+.
T Consensus 15 Gi~aL~~~l~~-~~~V~VvAP~~~qS 39 (253)
T PRK13935 15 GIIILAEYLSE-KHEVFVVAPDKERS 39 (253)
T ss_pred HHHHHHHHHHh-CCcEEEEccCCCCc
Confidence 36778888864 68999999877664
No 189
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.51 E-value=27 Score=32.19 Aligned_cols=39 Identities=15% Similarity=0.219 Sum_probs=31.2
Q ss_pred chHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc---hHHHHHHHcCCCeEE
Q 010684 103 LHPFLDLLAKLNDSSNSVNPAVSCIISDGFLP---FTITAAQQLGLPIVL 149 (504)
Q Consensus 103 ~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~---~~~~~A~~lgiP~v~ 149 (504)
...++.+++.++ +-++.+.|..+. -+..+|+..|||++.
T Consensus 137 ~~aM~~~m~~Lk--------~r~l~flDs~T~a~S~a~~iAk~~gVp~~~ 178 (250)
T COG2861 137 EDAMEKLMEALK--------ERGLYFLDSGTIANSLAGKIAKEIGVPVIK 178 (250)
T ss_pred HHHHHHHHHHHH--------HCCeEEEcccccccchhhhhHhhcCCceee
Confidence 356677888887 448999999877 367889999999987
No 190
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=67.20 E-value=18 Score=37.00 Aligned_cols=36 Identities=17% Similarity=0.022 Sum_probs=28.0
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccch
Q 010684 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNH 50 (504)
Q Consensus 10 ~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~ 50 (504)
.||||++-.+++-| +|++.|++.++-..+++.+.|.
T Consensus 4 ~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn~ 39 (426)
T PRK13789 4 KLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGNG 39 (426)
T ss_pred CcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCch
Confidence 68999999999988 6899999998655555544443
No 191
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=66.82 E-value=53 Score=32.14 Aligned_cols=40 Identities=18% Similarity=0.120 Sum_probs=32.1
Q ss_pred cEEEEEcCC-CcccHHHHHHHHHHHHhCCCeEEEEeCccch
Q 010684 11 VHAVCIPSP-FQSHIKAMLKLAKLLHHKGFHITFVNTEFNH 50 (504)
Q Consensus 11 ~~il~~~~~-~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~ 50 (504)
+||+|++.= +-|-..-..++|-.|++.|.+|.++++++-+
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAh 42 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAH 42 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCC
Confidence 477887775 4599888999999999999988888765443
No 192
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=66.58 E-value=12 Score=33.56 Aligned_cols=43 Identities=7% Similarity=-0.076 Sum_probs=35.4
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchH
Q 010684 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHR 51 (504)
Q Consensus 9 ~~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~ 51 (504)
+.+||++.-.|+-|=+.-...+++.|.++||+|.++.++.-.+
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~ 46 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQT 46 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHH
Confidence 3678999888877776667999999999999999998866443
No 193
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=66.52 E-value=39 Score=34.17 Aligned_cols=43 Identities=19% Similarity=0.153 Sum_probs=36.7
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchH
Q 010684 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHR 51 (504)
Q Consensus 9 ~~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~ 51 (504)
++..|+++-.=+.|-....-.||+.|+++|+.|.+++..-++.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~Rp 141 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRP 141 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCCh
Confidence 3556777777788999999999999999999999999876653
No 194
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=65.97 E-value=85 Score=28.60 Aligned_cols=33 Identities=12% Similarity=0.094 Sum_probs=26.3
Q ss_pred EEEEcCC-CcccHHHHHHHHHHHHhCCCeEEEEe
Q 010684 13 AVCIPSP-FQSHIKAMLKLAKLLHHKGFHITFVN 45 (504)
Q Consensus 13 il~~~~~-~~GHi~p~l~LA~~L~~~Gh~Vt~~~ 45 (504)
|++.... .-|-..-.+.|++.|+++|++|.++-
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~K 35 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYK 35 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEe
Confidence 3444444 34999999999999999999998865
No 195
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=65.96 E-value=94 Score=27.33 Aligned_cols=98 Identities=10% Similarity=0.069 Sum_probs=59.2
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEE---eCc-cch--HHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCC
Q 010684 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFV---NTE-FNH--RRLLKARGQHSLDGLPSFRFEAIPDGLPASSDE 83 (504)
Q Consensus 10 ~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~---~~~-~~~--~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~ 83 (504)
+--|.+++..+.|-..-.+.+|-..+.+|++|.++ -.. ... ..+++. ++.+.....++.-.
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~----------~~~~~~~g~g~~~~--- 71 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPH----------GVEFQVMGTGFTWE--- 71 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhc----------CcEEEECCCCCeec---
Confidence 34677888889999999999999999999999655 332 111 122221 67777777655322
Q ss_pred CCCcccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc
Q 010684 84 SPTAQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLP 134 (504)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~ 134 (504)
. .+...-... . ...++...+.+... .+|+||-|-+..
T Consensus 72 ~---~~~~~~~~~----~-~~~~~~a~~~l~~~------~~DlvVLDEi~~ 108 (173)
T TIGR00708 72 T---QNREADTAI----A-KAAWQHAKEMLADP------ELDLVLLDELTY 108 (173)
T ss_pred C---CCcHHHHHH----H-HHHHHHHHHHHhcC------CCCEEEehhhHH
Confidence 1 111111111 1 23333333444433 899999998764
No 196
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=65.91 E-value=48 Score=30.72 Aligned_cols=100 Identities=15% Similarity=0.186 Sum_probs=53.7
Q ss_pred CcEEEEEcCCCc-c-cHH--HHHHHHHHHHhCCCeEEEEeCccc--hHHHHhhhcCCCCCCCCCee--EEeCCCCCCCCC
Q 010684 10 KVHAVCIPSPFQ-S-HIK--AMLKLAKLLHHKGFHITFVNTEFN--HRRLLKARGQHSLDGLPSFR--FEAIPDGLPASS 81 (504)
Q Consensus 10 ~~~il~~~~~~~-G-Hi~--p~l~LA~~L~~~Gh~Vt~~~~~~~--~~~~~~~~~~~~~~~~~~i~--~~~l~~~~~~~~ 81 (504)
+..|++.+..+. . .+- -+.+|++.|.++|.+|.++.++.. .+.+..... +.. +..+.
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~--------~~~~~~~~~~------- 169 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAA--------GLQNPVINLA------- 169 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHT--------THTTTTEEET-------
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHH--------hcccceEeec-------
Confidence 556777777655 2 222 279999999999999988887766 232222200 110 00000
Q ss_pred CCCCCcccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEcccc
Q 010684 82 DESPTAQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTIS 154 (504)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~lgiP~v~~~~~~ 154 (504)
. ...+.++..-+. ..|++|+.. .+.+.+|..+|+|++.++...
T Consensus 170 -----------------~---~~~l~e~~ali~--------~a~~~I~~D--tg~~HlA~a~~~p~v~lfg~t 212 (247)
T PF01075_consen 170 -----------------G---KTSLRELAALIS--------RADLVIGND--TGPMHLAAALGTPTVALFGPT 212 (247)
T ss_dssp -----------------T---TS-HHHHHHHHH--------TSSEEEEES--SHHHHHHHHTT--EEEEESSS
T ss_pred -----------------C---CCCHHHHHHHHh--------cCCEEEecC--ChHHHHHHHHhCCEEEEecCC
Confidence 0 113334444443 558999763 478999999999999987544
No 197
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=65.68 E-value=51 Score=28.54 Aligned_cols=28 Identities=21% Similarity=0.353 Sum_probs=21.7
Q ss_pred cceEEecCCch------hHHHhhhcCCcEEecCC
Q 010684 382 IGGFLTHCGWN------SIVESLCSGVPMICWPF 409 (504)
Q Consensus 382 ~~~~I~HGG~g------s~~eal~~GvP~v~~P~ 409 (504)
.+++++|+|-| .+.+|...++|+|++.-
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 33477877744 67889999999999964
No 198
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=65.55 E-value=25 Score=32.42 Aligned_cols=36 Identities=17% Similarity=0.211 Sum_probs=31.6
Q ss_pred CCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHH
Q 010684 18 SPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRL 53 (504)
Q Consensus 18 ~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~ 53 (504)
=|+.|-..-.+.||.+|+++|-.|+++=.++++...
T Consensus 10 KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~ 45 (231)
T PF07015_consen 10 KGGAGKTTAAMALASELAARGARVALIDADPNQPLA 45 (231)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHH
Confidence 357799999999999999999999999988877543
No 199
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=65.36 E-value=1.1e+02 Score=29.59 Aligned_cols=81 Identities=20% Similarity=0.287 Sum_probs=58.1
Q ss_pred cCcEEE-eecchH---hhhcCCCcceEEec--CCchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCC
Q 010684 363 EKGFVA-SWCPQE---EVLKHPSIGGFLTH--CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDED 436 (504)
Q Consensus 363 ~nv~~~-~~vpq~---~lL~~~~~~~~I~H--GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~ 436 (504)
+++.+. +++|.+ ++|..||++-|+|+ =|.||+.-.++.|+|+++-- +=++|.... +.|+-+-.+. +.
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r---~n~fwqdl~--e~gv~Vlf~~--d~ 278 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSR---DNPFWQDLT--EQGLPVLFTG--DD 278 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEec---CCchHHHHH--hCCCeEEecC--Cc
Confidence 677775 477754 59999999777775 48999999999999998753 334555544 3477765555 67
Q ss_pred ccHHHHHHHHHHHh
Q 010684 437 VIRNEVEKLVREMM 450 (504)
Q Consensus 437 ~~~~~l~~ai~~vl 450 (504)
++...+.++=+++.
T Consensus 279 L~~~~v~e~~rql~ 292 (322)
T PRK02797 279 LDEDIVREAQRQLA 292 (322)
T ss_pred ccHHHHHHHHHHHH
Confidence 88888877644443
No 200
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=64.87 E-value=15 Score=30.95 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=36.2
Q ss_pred CCCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCc
Q 010684 8 CSKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (504)
Q Consensus 8 ~~~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~ 47 (504)
.+|.+|++.+.+..||=.-.--+++.|+..|.+|.....-
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~ 49 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLF 49 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCc
Confidence 3688999999999999999999999999999999987643
No 201
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=64.83 E-value=1.3e+02 Score=29.60 Aligned_cols=126 Identities=15% Similarity=0.115 Sum_probs=77.0
Q ss_pred CCCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccc--hHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCCC
Q 010684 8 CSKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFN--HRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESP 85 (504)
Q Consensus 8 ~~~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~ 85 (504)
..|.+++++..|--|+-=.|--=|..|++.|.+|.+++-... .+.+.+ .|+|+++.++.. +.. ..
T Consensus 10 ~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~---------hprI~ih~m~~l-~~~---~~ 76 (444)
T KOG2941|consen 10 SKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELLN---------HPRIRIHGMPNL-PFL---QG 76 (444)
T ss_pred cccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHhc---------CCceEEEeCCCC-ccc---CC
Confidence 448899999999999999999999999999999999985432 233332 358999998742 111 11
Q ss_pred CcccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcC-CcchHHHHH----HHcCCCeEEEccccHHH
Q 010684 86 TAQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDG-FLPFTITAA----QQLGLPIVLFFTISACS 157 (504)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~-~~~~~~~~A----~~lgiP~v~~~~~~~~~ 157 (504)
...-+.-.++.+.+.. ..+-.++. + .++|.++.-. -....+.+| .-.|...++=|....+.
T Consensus 77 ~p~~~~l~lKvf~Qfl--~Ll~aL~~-~--------~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ys 142 (444)
T KOG2941|consen 77 GPRVLFLPLKVFWQFL--SLLWALFV-L--------RPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYS 142 (444)
T ss_pred CchhhhhHHHHHHHHH--HHHHHHHh-c--------cCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHH
Confidence 1112223334443322 33334433 2 2778877543 344455544 34477777766655554
No 202
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=64.72 E-value=25 Score=32.81 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhCCCeEEEEeCccchHH
Q 010684 26 AMLKLAKLLHHKGFHITFVNTEFNHRR 52 (504)
Q Consensus 26 p~l~LA~~L~~~Gh~Vt~~~~~~~~~~ 52 (504)
-+.+|+++|. .+++|++++|..++.-
T Consensus 15 Gi~aL~~al~-~~~dV~VVAP~~~qSg 40 (252)
T COG0496 15 GIRALARALR-EGADVTVVAPDREQSG 40 (252)
T ss_pred HHHHHHHHHh-hCCCEEEEccCCCCcc
Confidence 3667788887 9999999999877653
No 203
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=64.62 E-value=25 Score=35.82 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=23.0
Q ss_pred CeeEEEEcCCcchHHHHHHHcCCCeEEEcc
Q 010684 123 AVSCIISDGFLPFTITAAQQLGLPIVLFFT 152 (504)
Q Consensus 123 ~~DlvI~D~~~~~~~~~A~~lgiP~v~~~~ 152 (504)
+||++|..+ .+..+|+++|||.+.+..
T Consensus 350 ~pDl~Ig~s---~~~~~a~~~giP~~r~~~ 376 (416)
T cd01980 350 RPDLAIGTT---PLVQYAKEKGIPALYYTN 376 (416)
T ss_pred CCCEEEeCC---hhhHHHHHhCCCEEEecC
Confidence 999999884 577899999999998653
No 204
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=64.53 E-value=9 Score=33.78 Aligned_cols=32 Identities=13% Similarity=0.153 Sum_probs=23.3
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 010684 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNT 46 (504)
Q Consensus 11 ~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~ 46 (504)
|||.++.- .|++ --.|+++...|||+||-++-
T Consensus 1 mKIaiIgA--sG~~--Gs~i~~EA~~RGHeVTAivR 32 (211)
T COG2910 1 MKIAIIGA--SGKA--GSRILKEALKRGHEVTAIVR 32 (211)
T ss_pred CeEEEEec--Cchh--HHHHHHHHHhCCCeeEEEEe
Confidence 57777643 3333 24689999999999998874
No 205
>PRK10867 signal recognition particle protein; Provisional
Probab=63.79 E-value=48 Score=33.96 Aligned_cols=43 Identities=16% Similarity=0.099 Sum_probs=34.8
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhC-CCeEEEEeCccchHH
Q 010684 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHK-GFHITFVNTEFNHRR 52 (504)
Q Consensus 10 ~~~il~~~~~~~GHi~p~l~LA~~L~~~-Gh~Vt~~~~~~~~~~ 52 (504)
+.-|+|+-.++.|-..-...||..|+++ |+.|.+++.+.++..
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~a 143 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPA 143 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchH
Confidence 3445555555779999999999999999 999999998876653
No 206
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=63.08 E-value=1.2e+02 Score=27.50 Aligned_cols=148 Identities=14% Similarity=0.181 Sum_probs=80.0
Q ss_pred CCeeEEEecCCccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHhh-ccCcEEEeecchHhhhcCCCc
Q 010684 304 PKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKA-KEKGFVASWCPQEEVLKHPSI 382 (504)
Q Consensus 304 ~~~~V~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~nv~~~~~vpq~~lL~~~~~ 382 (504)
++++++|+.|... ..-+..|...|.++.++-. . +.+.+.+-. ..++....--.+...+..+++
T Consensus 9 gk~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvsp-~--------~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~l 72 (205)
T TIGR01470 9 GRAVLVVGGGDVA-------LRKARLLLKAGAQLRVIAE-E--------LESELTLLAEQGGITWLARCFDADILEGAFL 72 (205)
T ss_pred CCeEEEECcCHHH-------HHHHHHHHHCCCEEEEEcC-C--------CCHHHHHHHHcCCEEEEeCCCCHHHhCCcEE
Confidence 5679999888664 2334555567877665533 1 112222111 135555432233455677777
Q ss_pred ceEEecCCchhHHH-----hhhcCCcEEec--CCCCCcchhhhhhhhhcceeEEecCC-CCCccHHHHHHHHHHHhcCch
Q 010684 383 GGFLTHCGWNSIVE-----SLCSGVPMICW--PFTGDQPTNGRYVCNEWGVGMEINGD-DEDVIRNEVEKLVREMMEGEK 454 (504)
Q Consensus 383 ~~~I~HGG~gs~~e-----al~~GvP~v~~--P~~~DQ~~na~rv~~~~G~G~~l~~~-~~~~~~~~l~~ai~~vl~~~~ 454 (504)
+|..-|...+.+ |-..|+|+-++ |-..| +.+-..+ ++-++-+.+.+. ....-...|++.|.+++....
T Consensus 73 --Vi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~-~~g~l~iaisT~G~sP~la~~lr~~ie~~l~~~~ 148 (205)
T TIGR01470 73 --VIAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIV-DRSPVVVAISSGGAAPVLARLLRERIETLLPPSL 148 (205)
T ss_pred --EEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEE-EcCCEEEEEECCCCCcHHHHHHHHHHHHhcchhH
Confidence 888888764444 44578888433 33333 2222333 332344444430 122334778888888885331
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010684 455 GKQMRNKAMEWKGLAEEA 472 (504)
Q Consensus 455 ~~~~~~~a~~l~~~~~~~ 472 (504)
+.+-+.+.++++.+++.
T Consensus 149 -~~~~~~~~~~R~~~k~~ 165 (205)
T TIGR01470 149 -GDLATLAATWRDAVKKR 165 (205)
T ss_pred -HHHHHHHHHHHHHHHhh
Confidence 25666777777777653
No 207
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=62.81 E-value=1.4e+02 Score=28.20 Aligned_cols=38 Identities=18% Similarity=0.206 Sum_probs=30.3
Q ss_pred eecchHhhhcCCCcceEEecCCchhHHHhhhcCCcEEec
Q 010684 369 SWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICW 407 (504)
Q Consensus 369 ~~vpq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~ 407 (504)
++=|+.+.|..++. .++|--..+...||.+-|+|+-++
T Consensus 234 g~NPY~~~La~Ady-ii~TaDSinM~sEAasTgkPv~~~ 271 (329)
T COG3660 234 GYNPYIDMLAAADY-IISTADSINMCSEAASTGKPVFIL 271 (329)
T ss_pred CCCchHHHHhhcce-EEEecchhhhhHHHhccCCCeEEE
Confidence 45688999988887 345566688899999999998764
No 208
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=62.81 E-value=1.1e+02 Score=27.26 Aligned_cols=101 Identities=15% Similarity=0.055 Sum_probs=62.4
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe---Cc-cchH-HHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCC
Q 010684 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVN---TE-FNHR-RLLKARGQHSLDGLPSFRFEAIPDGLPASSDE 83 (504)
Q Consensus 9 ~~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~---~~-~~~~-~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~ 83 (504)
.+-.|.+++..+.|-....+.+|-..+.+|++|.++- .. ...+ .+.+ ..+++.+...+.++.-.
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~--------~l~~v~~~~~g~~~~~~--- 89 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLE--------FGGGVEFHVMGTGFTWE--- 89 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHh--------cCCCcEEEECCCCCccc---
Confidence 3568999999999999999999999999999999875 11 1111 1111 12378888777544322
Q ss_pred CCCcccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc
Q 010684 84 SPTAQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLP 134 (504)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~ 134 (504)
. .+...-.... ...+....+.+.+. .+|+||-|-+..
T Consensus 90 --~-~~~~e~~~~~-----~~~~~~a~~~l~~~------~ydlvVLDEi~~ 126 (191)
T PRK05986 90 --T-QDRERDIAAA-----REGWEEAKRMLADE------SYDLVVLDELTY 126 (191)
T ss_pred --C-CCcHHHHHHH-----HHHHHHHHHHHhCC------CCCEEEEehhhH
Confidence 1 1111111111 33444444444443 899999998765
No 209
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=62.23 E-value=34 Score=35.04 Aligned_cols=38 Identities=24% Similarity=0.339 Sum_probs=28.1
Q ss_pred HHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEc
Q 010684 105 PFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFF 151 (504)
Q Consensus 105 ~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~lgiP~v~~~ 151 (504)
.+.++.+.+++. +||++|.+. ....+|+++|+|++.+.
T Consensus 359 d~~el~~~i~~~------~pdliig~~---~~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 359 DLWDLESLAKEE------PVDLLIGNS---HGRYLARDLGIPLVRVG 396 (428)
T ss_pred CHHHHHHHhhcc------CCCEEEECc---hhHHHHHhcCCCEEEec
Confidence 444555555544 899999997 34788999999998754
No 210
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.07 E-value=25 Score=34.91 Aligned_cols=42 Identities=14% Similarity=0.153 Sum_probs=34.6
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchH
Q 010684 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHR 51 (504)
Q Consensus 10 ~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~ 51 (504)
+.-|+|+-.-+.|-...+-.+|..+.++|+.|.+++.+-|+.
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRa 142 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRA 142 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeeccccc
Confidence 334555555588999999999999999999999999887754
No 211
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=62.00 E-value=46 Score=30.88 Aligned_cols=33 Identities=18% Similarity=0.339 Sum_probs=24.0
Q ss_pred eeEEE-EcCCcc-hHHHHHHHcCCCeEEEccccHH
Q 010684 124 VSCII-SDGFLP-FTITAAQQLGLPIVLFFTISAC 156 (504)
Q Consensus 124 ~DlvI-~D~~~~-~~~~~A~~lgiP~v~~~~~~~~ 156 (504)
||+++ .|+..- -++.=|.++|||+|.++-+.+.
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~d 191 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNCD 191 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCCC
Confidence 88877 454322 5677799999999998766543
No 212
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=61.81 E-value=72 Score=28.40 Aligned_cols=45 Identities=20% Similarity=0.106 Sum_probs=29.1
Q ss_pred ccHHH-HHHHHHHHHhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCC
Q 010684 22 SHIKA-MLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIP 74 (504)
Q Consensus 22 GHi~p-~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 74 (504)
|=+-. .-.|+..|+++||+||+++...+.+.- ...+.|++...++
T Consensus 17 GGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~--------~~~y~gv~l~~i~ 62 (185)
T PF09314_consen 17 GGFETFVEELAPRLVSKGIDVTVYCRSDYYPYK--------EFEYNGVRLVYIP 62 (185)
T ss_pred CcHHHHHHHHHHHHhcCCceEEEEEccCCCCCC--------CcccCCeEEEEeC
Confidence 44433 456888888899999999875544211 1123478888776
No 213
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=61.04 E-value=53 Score=28.32 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=23.8
Q ss_pred CCCcccHHHHHHHHHHHHhCCCeEEEE
Q 010684 18 SPFQSHIKAMLKLAKLLHHKGFHITFV 44 (504)
Q Consensus 18 ~~~~GHi~p~l~LA~~L~~~Gh~Vt~~ 44 (504)
.+.-|-..-.+.|+..|.++|.+|.++
T Consensus 6 ~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 6 DTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 345688999999999999999999986
No 214
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=60.33 E-value=50 Score=29.34 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCC--CCCCCC
Q 010684 25 KAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIP--DGLPAS 80 (504)
Q Consensus 25 ~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~--~~~~~~ 80 (504)
.-...+|+.|.+.|+++. +| ......+++. |+.+..+. .++|+.
T Consensus 11 ~~l~~lAk~L~~lGf~I~-AT-~GTAk~L~e~----------GI~v~~V~k~TgfpE~ 56 (187)
T cd01421 11 TGLVEFAKELVELGVEIL-ST-GGTAKFLKEA----------GIPVTDVSDITGFPEI 56 (187)
T ss_pred ccHHHHHHHHHHCCCEEE-Ec-cHHHHHHHHc----------CCeEEEhhhccCCcHh
Confidence 347899999999999994 44 4556666666 78777775 466665
No 215
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=60.01 E-value=61 Score=33.13 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=24.4
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCc
Q 010684 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (504)
Q Consensus 12 ~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~ 47 (504)
|+.++..+.. .+.+++.|.+-|-+|..+.+.
T Consensus 287 kv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~ 317 (422)
T TIGR02015 287 RVTVSGYEGS-----ELLVVRLLLESGADVPYVGTA 317 (422)
T ss_pred eEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecC
Confidence 7777766555 888999999999999987654
No 216
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=59.63 E-value=12 Score=37.74 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=25.3
Q ss_pred EEEEEcCC-CcccHHHHHHHHHHHHhCCCeEEEE
Q 010684 12 HAVCIPSP-FQSHIKAMLKLAKLLHHKGFHITFV 44 (504)
Q Consensus 12 ~il~~~~~-~~GHi~p~l~LA~~L~~~Gh~Vt~~ 44 (504)
+|++.... +.|-..-.+.|.++|++||++|.=+
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~Vqpf 35 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPF 35 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCccccc
Confidence 34444444 3499999999999999999999843
No 217
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=59.49 E-value=23 Score=29.01 Aligned_cols=40 Identities=13% Similarity=0.275 Sum_probs=35.2
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchH
Q 010684 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHR 51 (504)
Q Consensus 12 ~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~ 51 (504)
||++.+.++..|-.-..-++..|..+|++|.+.......+
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e 40 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPE 40 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHH
Confidence 6899999999999999999999999999999998754333
No 218
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=59.41 E-value=64 Score=28.73 Aligned_cols=99 Identities=17% Similarity=0.193 Sum_probs=49.7
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCcc-chHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCCCCcc
Q 010684 12 HAVCIPSPFQSHIKAMLKLAKLLHHK--GFHITFVNTEF-NHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTAQ 88 (504)
Q Consensus 12 ~il~~~~~~~GHi~p~l~LA~~L~~~--Gh~Vt~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~ 88 (504)
.++-+=..+.|-++-...|+++|.++ |++|.+-+... ..+.+.+...+ .+....+| .+
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~-------~v~~~~~P----~D-------- 82 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPD-------RVDVQYLP----LD-------- 82 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GG-------G-SEEE-------S--------
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCC-------CeEEEEeC----cc--------
Confidence 44555566789999999999999997 89888877533 33334333110 12212223 11
Q ss_pred cHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcC--CcchHHHHHHHcCCCeEEEc
Q 010684 89 DAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDG--FLPFTITAAQQLGLPIVLFF 151 (504)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~--~~~~~~~~A~~lgiP~v~~~ 151 (504)
. ...++.+++.+ +||++|.-. +.+..+..|++.|||++.+.
T Consensus 83 ------------~-~~~~~rfl~~~---------~P~~~i~~EtElWPnll~~a~~~~ip~~LvN 125 (186)
T PF04413_consen 83 ------------F-PWAVRRFLDHW---------RPDLLIWVETELWPNLLREAKRRGIPVVLVN 125 (186)
T ss_dssp ------------S-HHHHHHHHHHH-----------SEEEEES----HHHHHH-----S-EEEEE
T ss_pred ------------C-HHHHHHHHHHh---------CCCEEEEEccccCHHHHHHHhhcCCCEEEEe
Confidence 0 23455667777 777766433 33357777889999999964
No 219
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=58.79 E-value=1.4e+02 Score=26.90 Aligned_cols=40 Identities=13% Similarity=0.212 Sum_probs=31.4
Q ss_pred CCcEEEEEcC--CCcccHHHHHHHHHHHHh-CCCeEEEEeCcc
Q 010684 9 SKVHAVCIPS--PFQSHIKAMLKLAKLLHH-KGFHITFVNTEF 48 (504)
Q Consensus 9 ~~~~il~~~~--~~~GHi~p~l~LA~~L~~-~Gh~Vt~~~~~~ 48 (504)
.+++++.++. ++.|--.-...||..|++ +|++|.++-...
T Consensus 33 ~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~ 75 (207)
T TIGR03018 33 KNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADL 75 (207)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 3567776665 567888889999999996 699999986543
No 220
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=58.29 E-value=25 Score=32.69 Aligned_cols=94 Identities=12% Similarity=0.086 Sum_probs=53.0
Q ss_pred CCeeEEEecCCcc---ccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHhhcc----Cc-EEEee--cch
Q 010684 304 PKSVIYVNFGSFI---FMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKE----KG-FVASW--CPQ 373 (504)
Q Consensus 304 ~~~~V~vs~GS~~---~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----nv-~~~~~--vpq 373 (504)
+++.|.+..|+.. ..+.+.+..+++.+.+.+.++++..+... ......+.+.+ ++ .+.+- +.+
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~e 176 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEE-------QEKEIADQIAAGLQNPVINLAGKTSLRE 176 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHH-------HHHHHHHHHHTTHTTTTEEETTTS-HHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchH-------HHHHHHHHHHHhcccceEeecCCCCHHH
Confidence 5567888777754 55778899999999888866554433220 00111112222 22 23232 333
Q ss_pred -HhhhcCCCcceEEecCCchhHHHhhhcCCcEEec
Q 010684 374 -EEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICW 407 (504)
Q Consensus 374 -~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~ 407 (504)
..++.++++ +|+.- .|.++=|...|+|+|++
T Consensus 177 ~~ali~~a~~--~I~~D-tg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 177 LAALISRADL--VIGND-TGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHHHTSSE--EEEES-SHHHHHHHHTT--EEEE
T ss_pred HHHHHhcCCE--EEecC-ChHHHHHHHHhCCEEEE
Confidence 358999998 88755 48999999999999998
No 221
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=58.04 E-value=58 Score=25.68 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=20.5
Q ss_pred CeeEEEEcCCcc---hHHHHHHHcCCCeEE
Q 010684 123 AVSCIISDGFLP---FTITAAQQLGLPIVL 149 (504)
Q Consensus 123 ~~DlvI~D~~~~---~~~~~A~~lgiP~v~ 149 (504)
+.|++|..+-.+ ...+.-+..|||++.
T Consensus 62 ~idlvvvGPE~pL~~Gl~D~l~~~gi~vfG 91 (100)
T PF02844_consen 62 KIDLVVVGPEAPLVAGLADALRAAGIPVFG 91 (100)
T ss_dssp TESEEEESSHHHHHTTHHHHHHHTT-CEES
T ss_pred CCCEEEECChHHHHHHHHHHHHHCCCcEEC
Confidence 899999887544 677778888999764
No 222
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=57.92 E-value=49 Score=31.06 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhCCCeEEEEeCccchH
Q 010684 26 AMLKLAKLLHHKGFHITFVNTEFNHR 51 (504)
Q Consensus 26 p~l~LA~~L~~~Gh~Vt~~~~~~~~~ 51 (504)
-+.+|+++|.+. |+|++++|...+.
T Consensus 15 Gi~aL~~~l~~~-~~V~VvAP~~~qS 39 (250)
T PRK00346 15 GIRALAEALREL-ADVTVVAPDRERS 39 (250)
T ss_pred hHHHHHHHHHhC-CCEEEEeCCCCCc
Confidence 377899999988 7999999877654
No 223
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=57.87 E-value=75 Score=30.58 Aligned_cols=117 Identities=11% Similarity=0.072 Sum_probs=67.0
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHHhhh-c----CCCCCCCCCeeEEeCCCCCCCCCCCC
Q 010684 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKAR-G----QHSLDGLPSFRFEAIPDGLPASSDES 84 (504)
Q Consensus 10 ~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~-~----~~~~~~~~~i~~~~l~~~~~~~~~~~ 84 (504)
...|.+.=.|+.|--.-.=+|.+.|.++||+|-++.-.+....--.+. + -+.....+++=+.+++
T Consensus 51 a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~---------- 120 (323)
T COG1703 51 AHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSP---------- 120 (323)
T ss_pred CcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecC----------
Confidence 446777778889999999999999999999999988544221100000 0 0000111223222222
Q ss_pred CCcccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc--hHHHHHHHcCCCeEEEcc
Q 010684 85 PTAQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLP--FTITAAQQLGLPIVLFFT 152 (504)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~--~~~~~A~~lgiP~v~~~~ 152 (504)
+...+.. + .....+.+..+... +||+||...... +=..+++...+=.++..|
T Consensus 121 -srG~lGG----l-----S~at~~~i~~ldAa------G~DvIIVETVGvGQsev~I~~~aDt~~~v~~p 174 (323)
T COG1703 121 -SRGTLGG----L-----SRATREAIKLLDAA------GYDVIIVETVGVGQSEVDIANMADTFLVVMIP 174 (323)
T ss_pred -CCccchh----h-----hHHHHHHHHHHHhc------CCCEEEEEecCCCcchhHHhhhcceEEEEecC
Confidence 1111111 1 22333445555544 999999997655 566777777766666544
No 224
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=57.24 E-value=1e+02 Score=32.06 Aligned_cols=110 Identities=14% Similarity=0.099 Sum_probs=73.7
Q ss_pred cEEEeecchHh---hhcCCCcceEEe--cCCchh-HHHhhhcCC----cEEecCCCCCcchhhhhhhhhcceeEEecCCC
Q 010684 365 GFVASWCPQEE---VLKHPSIGGFLT--HCGWNS-IVESLCSGV----PMICWPFTGDQPTNGRYVCNEWGVGMEINGDD 434 (504)
Q Consensus 365 v~~~~~vpq~~---lL~~~~~~~~I~--HGG~gs-~~eal~~Gv----P~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 434 (504)
+++.+.+|+.+ +++.+|+ ++|| .-|.|- ..|.+.++. |+|+-=+.+ | . +.+.-++.+++
T Consensus 364 ~~~~~~v~~~el~alYr~ADV-~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG-----a--a-~~l~~AllVNP-- 432 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV-MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG-----A--A-VELKGALLTNP-- 432 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE-EEECccccccCcchhhHHhhhcCCCCCEEEecccc-----c--h-hhcCCCEEECC--
Confidence 45667888765 6667887 3333 458884 459999877 444433221 1 1 33444677774
Q ss_pred CCccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHhc
Q 010684 435 EDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEILLS 493 (504)
Q Consensus 435 ~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 493 (504)
.+.++++++|.++|+.+..| -+++.+++.+.+... +...=.++|+++|...
T Consensus 433 --~d~~~~A~ai~~AL~m~~~E-r~~R~~~l~~~v~~~-----d~~~W~~~fl~~l~~~ 483 (487)
T TIGR02398 433 --YDPVRMDETIYVALAMPKAE-QQARMREMFDAVNYY-----DVQRWADEFLAAVSPQ 483 (487)
T ss_pred --CCHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHhhC-----CHHHHHHHHHHHhhhc
Confidence 68899999999999987443 366777777777653 6677788888888753
No 225
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=57.06 E-value=90 Score=28.04 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=30.1
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccch
Q 010684 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNH 50 (504)
Q Consensus 12 ~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~ 50 (504)
.|+|+=..+-|-..-...||..++.+|..|.+++...++
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 344454557799999999999999999999999987663
No 226
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=56.74 E-value=22 Score=33.65 Aligned_cols=54 Identities=20% Similarity=0.291 Sum_probs=38.2
Q ss_pred CCCcceEEecCCchhHHHhhh------cCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcC
Q 010684 379 HPSIGGFLTHCGWNSIVESLC------SGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEG 452 (504)
Q Consensus 379 ~~~~~~~I~HGG~gs~~eal~------~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~ 452 (504)
.+++ +|+-||-||+..+++ .++|++.+-. -+ +|.- ..++++++.+++.+++++
T Consensus 35 ~~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN~------------G~--lGFL-----~~~~~~~~~~~l~~i~~g 93 (265)
T PRK04885 35 NPDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVHT------------GH--LGFY-----TDWRPFEVDKLVIALAKD 93 (265)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEeC------------CC--ceec-----ccCCHHHHHHHHHHHHcC
Confidence 3566 999999999999986 4788877653 11 2211 235668888888888876
Q ss_pred c
Q 010684 453 E 453 (504)
Q Consensus 453 ~ 453 (504)
+
T Consensus 94 ~ 94 (265)
T PRK04885 94 P 94 (265)
T ss_pred C
Confidence 5
No 227
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=56.21 E-value=25 Score=33.09 Aligned_cols=48 Identities=15% Similarity=0.163 Sum_probs=40.6
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHHhh
Q 010684 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKA 56 (504)
Q Consensus 9 ~~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~ 56 (504)
++..++|+=.++.|-..=..+||.+|.++|+.|+|++.+.....+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA 151 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH
Confidence 356888888888888888999999999889999999988877766654
No 228
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=56.03 E-value=1.2e+02 Score=29.69 Aligned_cols=100 Identities=14% Similarity=0.230 Sum_probs=59.3
Q ss_pred CcEEEEEcCCCcc---c--HHHHHHHHHHHHhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCC
Q 010684 10 KVHAVCIPSPFQS---H--IKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDES 84 (504)
Q Consensus 10 ~~~il~~~~~~~G---H--i~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~ 84 (504)
+.-|++-|..+.| . ..-+.+|++.|.++|.+|.+++++...+..++... .. +...
T Consensus 174 ~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~--------~~-----~~~~------- 233 (334)
T TIGR02195 174 RPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEA--------LL-----PGEL------- 233 (334)
T ss_pred CCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHH--------hC-----Cccc-------
Confidence 3456666655333 1 22588999999989999999888765554332200 00 0000
Q ss_pred CCcccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEcc
Q 010684 85 PTAQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFT 152 (504)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~lgiP~v~~~~ 152 (504)
. .+.. ...+.++..-+. +.|++|+.. .+.+.+|..+|+|+|.++.
T Consensus 234 ---------~-~l~g---~~sL~el~ali~--------~a~l~I~~D--SGp~HlAaA~~~P~i~lfG 278 (334)
T TIGR02195 234 ---------R-NLAG---ETSLDEAVDLIA--------LAKAVVTND--SGLMHVAAALNRPLVALYG 278 (334)
T ss_pred ---------c-cCCC---CCCHHHHHHHHH--------hCCEEEeeC--CHHHHHHHHcCCCEEEEEC
Confidence 0 0001 123444444443 458999763 4788999999999998765
No 229
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=55.93 E-value=50 Score=30.39 Aligned_cols=114 Identities=16% Similarity=0.214 Sum_probs=67.5
Q ss_pred CCCCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCCCC
Q 010684 7 ACSKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPT 86 (504)
Q Consensus 7 ~~~~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~ 86 (504)
...|.=|+|+=.|++|-.+=...|++-|.=.|++..++....++........ ...| +.+. .
T Consensus 9 ~~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~--------~~~f------f~p~-----n 69 (222)
T PF01591_consen 9 HAGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQ--------DAEF------FDPD-----N 69 (222)
T ss_dssp ----EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S---------GGG------GSTT------
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceeccccccc--------cccc------CCCC-----C
Confidence 3568889999999999999999999999999999999987776665443200 0000 0000 1
Q ss_pred cccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc------hHHHHHHHcCCCeEEE
Q 010684 87 AQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLP------FTITAAQQLGLPIVLF 150 (504)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~------~~~~~A~~lgiP~v~~ 150 (504)
.. -..++..++...+++++..+.+. +-++-|.|.... .........|+.++.+
T Consensus 70 ----~~-~~~~R~~~a~~~l~dl~~~l~~~------~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFI 128 (222)
T PF01591_consen 70 ----EE-AKKLREQIAKEALEDLIEWLQEE------GGQVAIFDATNSTRERRKMLVERFKEHGIKVLFI 128 (222)
T ss_dssp ----HH-HHHHHHHHHHHHHHHHHHHHHTS--------SEEEEES---SHHHHHHHHHHHHHTT-EEEEE
T ss_pred ----hH-HHHHHHHHHHHHHHHHHHHHhcC------CCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEE
Confidence 11 11222222146777888877755 568999998755 4566677888776664
No 230
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=55.90 E-value=88 Score=32.12 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=22.1
Q ss_pred CeeEEEEcCCcchHHHHHHHcCCCeEEEc
Q 010684 123 AVSCIISDGFLPFTITAAQQLGLPIVLFF 151 (504)
Q Consensus 123 ~~DlvI~D~~~~~~~~~A~~lgiP~v~~~ 151 (504)
++|++|.+. ....+|+++|||++.+.
T Consensus 373 ~~dliig~s---~~k~~A~~l~ip~ir~g 398 (432)
T TIGR01285 373 GADLLITNS---HGRALAQRLALPLVRAG 398 (432)
T ss_pred CCCEEEECc---chHHHHHHcCCCEEEec
Confidence 899999987 45789999999998853
No 231
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=55.88 E-value=2.1e+02 Score=28.17 Aligned_cols=118 Identities=19% Similarity=0.190 Sum_probs=67.5
Q ss_pred hhccCcEEEeecchHh---hhcCCCcceEEecCCch-----hHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEec
Q 010684 360 KAKEKGFVASWCPQEE---VLKHPSIGGFLTHCGWN-----SIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEIN 431 (504)
Q Consensus 360 ~~~~nv~~~~~vpq~~---lL~~~~~~~~I~HGG~g-----s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~ 431 (504)
.+++++.+..-+|..+ +|..+.+ =| |+=|| ++.|.+++|.=+|+==-.+--.+.- ..+ .|-...
T Consensus 334 ~i~~~v~F~~N~Py~~lv~lL~~a~i--Gv-h~MwNEHFGIsVVEyMAAGlIpi~h~SgGP~lDIV----~~~-~G~~tG 405 (465)
T KOG1387|consen 334 KIPKHVQFEKNVPYEKLVELLGKATI--GV-HTMWNEHFGISVVEYMAAGLIPIVHNSGGPLLDIV----TPW-DGETTG 405 (465)
T ss_pred CCccceEEEecCCHHHHHHHhcccee--eh-hhhhhhhcchhHHHHHhcCceEEEeCCCCCceeee----ecc-CCccce
Confidence 3568888888899876 4545544 22 44333 7899999997544321111111111 110 111111
Q ss_pred CCCCCccHHHHHHHHHHHhc-Cch-HHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHh
Q 010684 432 GDDEDVIRNEVEKLVREMME-GEK-GKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEILL 492 (504)
Q Consensus 432 ~~~~~~~~~~l~~ai~~vl~-~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 492 (504)
. -..|.++-++++.+++. |++ ...++++|++-.++|.+. .-+.+....+..+.+
T Consensus 406 F--la~t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~RFsE~-----~F~kd~~~~i~kll~ 461 (465)
T KOG1387|consen 406 F--LAPTDEEYAEAILKIVKLNYDERNMMRRNARKSLARFGEL-----KFDKDWENPICKLLE 461 (465)
T ss_pred e--ecCChHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhHH-----HHHHhHhHHHHHhhc
Confidence 1 23567888888888886 443 366888888888888754 344444555554443
No 232
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=55.64 E-value=80 Score=25.42 Aligned_cols=92 Identities=17% Similarity=0.173 Sum_probs=53.6
Q ss_pred EEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCCC--CCCCCCCCCCCcccHHH
Q 010684 15 CIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPD--GLPASSDESPTAQDAYS 92 (504)
Q Consensus 15 ~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~--~~~~~~~~~~~~~~~~~ 92 (504)
|++.... +-.-+..+|+.|.+.|++|. +| +.-.+.+.+. |+.+..+.. +.... +
T Consensus 4 lisv~~~-dk~~~~~~a~~l~~~G~~i~-aT-~gTa~~L~~~----------gi~~~~v~~~~~~~~~----~------- 59 (116)
T cd01423 4 LISIGSY-SKPELLPTAQKLSKLGYKLY-AT-EGTADFLLEN----------GIPVTPVAWPSEEPQN----D------- 59 (116)
T ss_pred EEecCcc-cchhHHHHHHHHHHCCCEEE-Ec-cHHHHHHHHc----------CCCceEeeeccCCCCC----C-------
Confidence 4444333 55568899999999999984 44 3444455544 555444421 11110 0
Q ss_pred HHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCC---------cchHHHHHHHcCCCeEE
Q 010684 93 LGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGF---------LPFTITAAQQLGLPIVL 149 (504)
Q Consensus 93 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~---------~~~~~~~A~~lgiP~v~ 149 (504)
.+.+.+++++ . ++|+||.-+. .+.-...|-.+|||++.
T Consensus 60 ----------~~~i~~~i~~---~------~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 60 ----------KPSLRELLAE---G------KIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred ----------chhHHHHHHc---C------CceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 1233344443 2 8899998432 23456678999999974
No 233
>PRK14099 glycogen synthase; Provisional
Probab=55.54 E-value=20 Score=37.38 Aligned_cols=40 Identities=10% Similarity=0.173 Sum_probs=30.1
Q ss_pred CCcEEEEEcCCCc------ccHHHHHHHHHHHHhCCCeEEEEeCcc
Q 010684 9 SKVHAVCIPSPFQ------SHIKAMLKLAKLLHHKGFHITFVNTEF 48 (504)
Q Consensus 9 ~~~~il~~~~~~~------GHi~p~l~LA~~L~~~Gh~Vt~~~~~~ 48 (504)
++|||+|++.-.. |=-.-.-+|.++|+++||+|.++.|..
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y 47 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGY 47 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 4789999975321 333346788999999999999999854
No 234
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=55.22 E-value=32 Score=31.40 Aligned_cols=45 Identities=13% Similarity=0.096 Sum_probs=38.7
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHH
Q 010684 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRL 53 (504)
Q Consensus 9 ~~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~ 53 (504)
.+.+|++.+.++..|-....-++-.|..+|++|++....-..+.+
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~ 131 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKI 131 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHH
Confidence 467999999999999999999999999999999999865444333
No 235
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=55.16 E-value=18 Score=32.16 Aligned_cols=40 Identities=13% Similarity=0.041 Sum_probs=34.2
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccch
Q 010684 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNH 50 (504)
Q Consensus 11 ~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~ 50 (504)
+||++.-.|+.|=+.-.+.+.+.|.+.|++|+++.++.-.
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~ 40 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQ 40 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHH
Confidence 3788888888888888889999999999999998876543
No 236
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=54.74 E-value=36 Score=28.48 Aligned_cols=44 Identities=14% Similarity=0.067 Sum_probs=37.2
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHH
Q 010684 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRL 53 (504)
Q Consensus 10 ~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~ 53 (504)
+.+|++.+.++.+|-.----++..|.+.|++|......-..+.+
T Consensus 1 ~~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~ 44 (134)
T TIGR01501 1 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEF 44 (134)
T ss_pred CCeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 35899999999999999999999999999999998865443333
No 237
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=54.43 E-value=73 Score=30.13 Aligned_cols=25 Identities=12% Similarity=0.111 Sum_probs=18.1
Q ss_pred HHHHHHHHHhC---CCeEEEEeCccchH
Q 010684 27 MLKLAKLLHHK---GFHITFVNTEFNHR 51 (504)
Q Consensus 27 ~l~LA~~L~~~---Gh~Vt~~~~~~~~~ 51 (504)
+.+|+++|... |++|++++|...+.
T Consensus 16 l~aL~~~l~~~~~~~~~V~VVAP~~eqS 43 (261)
T PRK13931 16 LEVLEQIATELAGPDGEVWTVAPAFEQS 43 (261)
T ss_pred HHHHHHHHHHhccCCCeEEEEeCCCCCC
Confidence 55677777663 47999999877654
No 238
>PTZ00445 p36-lilke protein; Provisional
Probab=53.96 E-value=61 Score=29.47 Aligned_cols=116 Identities=14% Similarity=0.032 Sum_probs=60.7
Q ss_pred ccHHH-HHHHHHHHHhCCCeEEEEeCccchH--------------HHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCCCC
Q 010684 22 SHIKA-MLKLAKLLHHKGFHITFVNTEFNHR--------------RLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPT 86 (504)
Q Consensus 22 GHi~p-~l~LA~~L~~~Gh~Vt~~~~~~~~~--------------~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~ 86 (504)
+|+.| +..+.++|.+.|..|+++|-..... .++.... .. +. .++...+-..+|.. |+.
T Consensus 74 ~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk-~s--~~-~~~i~~~~~yyp~~---w~~ 146 (219)
T PTZ00445 74 TSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALK-KS--KC-DFKIKKVYAYYPKF---WQE 146 (219)
T ss_pred ccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHH-hc--Cc-cceeeeeeeeCCcc---cCC
Confidence 45667 8889999999999999999654322 2221110 00 00 22222222233333 332
Q ss_pred cccHHHHHHHHHHhhcc--hHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEcc
Q 010684 87 AQDAYSLGENIINNVLL--HPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFT 152 (504)
Q Consensus 87 ~~~~~~~~~~~~~~~~~--~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~lgiP~v~~~~ 152 (504)
..+.... ...-..-.. -.++.++++..-. .-++++.|. ...-+..|+++|+-.+.+..
T Consensus 147 p~~y~~~-gl~KPdp~iK~yHle~ll~~~gl~------peE~LFIDD-~~~NVeaA~~lGi~ai~f~~ 206 (219)
T PTZ00445 147 PSDYRPL-GLDAPMPLDKSYHLKQVCSDFNVN------PDEILFIDD-DMNNCKNALKEGYIALHVTG 206 (219)
T ss_pred hhhhhhh-cccCCCccchHHHHHHHHHHcCCC------HHHeEeecC-CHHHHHHHHHCCCEEEEcCC
Confidence 2221110 000000000 0125566554322 447888887 45789999999999988643
No 239
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=53.79 E-value=50 Score=34.84 Aligned_cols=112 Identities=15% Similarity=0.153 Sum_probs=65.9
Q ss_pred cccHHHHHHHH-HHHHhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCCC-CC------------CCCC--CCC
Q 010684 21 QSHIKAMLKLA-KLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPD-GL------------PASS--DES 84 (504)
Q Consensus 21 ~GHi~p~l~LA-~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~-~~------------~~~~--~~~ 84 (504)
.|++.-.+.+| +.+.+.|++|.+.-+ .+.+.+++.. .+.+..++. .+ .... -..
T Consensus 36 ~~~~~~~~~~a~~~~~~~~~dviIsrG-~ta~~i~~~~---------~iPVv~i~~s~~Dil~al~~a~~~~~~ia~vg~ 105 (526)
T TIGR02329 36 QLGFEDAVREIRQRLGAERCDVVVAGG-SNGAYLKSRL---------SLPVIVIKPTGFDVMQALARARRIASSIGVVTH 105 (526)
T ss_pred eccHHHHHHHHHHHHHhCCCcEEEECc-hHHHHHHHhC---------CCCEEEecCChhhHHHHHHHHHhcCCcEEEEec
Confidence 37777888888 447777999987655 4566666542 333444431 00 0000 000
Q ss_pred -CCcccHHHHHHHHHHh--------hcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEccc
Q 010684 85 -PTAQDAYSLGENIINN--------VLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTI 153 (504)
Q Consensus 85 -~~~~~~~~~~~~~~~~--------~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~lgiP~v~~~~~ 153 (504)
........+...+ .. . .+.....++.+++. ++++||+|. .+..+|+++|++.|.+...
T Consensus 106 ~~~~~~~~~~~~ll-~~~i~~~~~~~-~~e~~~~~~~l~~~------G~~~viG~~---~~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 106 QDTPPALRRFQAAF-NLDIVQRSYVT-EEDARSCVNDLRAR------GIGAVVGAG---LITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred CcccHHHHHHHHHh-CCceEEEEecC-HHHHHHHHHHHHHC------CCCEEECCh---HHHHHHHHcCCceEEEecH
Confidence 0111112222211 11 1 24566777888877 999999997 4678999999999998764
No 240
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=53.78 E-value=1.1e+02 Score=24.40 Aligned_cols=85 Identities=15% Similarity=0.123 Sum_probs=50.1
Q ss_pred cHHHHHHHHHHHHhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCCCCcccHHHHHHHHHHhhc
Q 010684 23 HIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTAQDAYSLGENIINNVL 102 (504)
Q Consensus 23 Hi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (504)
+=.-++.+|+.|.+.|+++. +|. .-...+++. |+.+..+... +.+ .
T Consensus 10 ~K~~~~~~a~~l~~~G~~i~-AT~-gTa~~L~~~----------Gi~~~~v~~~-~~~--------------------g- 55 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPLF-ATG-GTSRVLADA----------GIPVRAVSKR-HED--------------------G- 55 (112)
T ss_pred cHHHHHHHHHHHHHCCCEEE-ECc-HHHHHHHHc----------CCceEEEEec-CCC--------------------C-
Confidence 44557899999999999984 543 444455554 6665554311 010 1
Q ss_pred chHHHHHHHHhhcCCCCCCCCeeEEEEcC--Cc--------chHHHHHHHcCCCeEE
Q 010684 103 LHPFLDLLAKLNDSSNSVNPAVSCIISDG--FL--------PFTITAAQQLGLPIVL 149 (504)
Q Consensus 103 ~~~~~~ll~~l~~~~~~~~~~~DlvI~D~--~~--------~~~~~~A~~lgiP~v~ 149 (504)
.+.+.++++.- . ++|+||.-+ .. +.-.-+|-..|||++.
T Consensus 56 ~~~i~~~i~~~--g------~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 56 EPTVDAAIAEK--G------KFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTT 104 (112)
T ss_pred CcHHHHHHhCC--C------CEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEE
Confidence 23333333320 3 889998732 22 2345568888999987
No 241
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=53.71 E-value=1.4e+02 Score=32.94 Aligned_cols=40 Identities=10% Similarity=0.198 Sum_probs=31.7
Q ss_pred CcEEEEEcCC--CcccHHHHHHHHHHHHhCCCeEEEEeCccc
Q 010684 10 KVHAVCIPSP--FQSHIKAMLKLAKLLHHKGFHITFVNTEFN 49 (504)
Q Consensus 10 ~~~il~~~~~--~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~ 49 (504)
+.|+++++.. +-|-..-...||..|+..|++|.++-....
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r 571 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLR 571 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 5577777765 447788899999999999999999976443
No 242
>PRK10490 sensor protein KdpD; Provisional
Probab=53.27 E-value=62 Score=36.77 Aligned_cols=38 Identities=21% Similarity=0.154 Sum_probs=34.8
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCc
Q 010684 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (504)
Q Consensus 10 ~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~ 47 (504)
++||.+=..|+-|-.+.|+.-|.+|+++|++|.+-.-+
T Consensus 24 ~l~i~~g~~~gvgkt~~ml~~a~~~~~~g~dvv~g~~e 61 (895)
T PRK10490 24 KLKIFFGACAGVGKTYAMLQEAQRLRAQGLDVLVGVVE 61 (895)
T ss_pred cEEEEeecCCCCCHHHHHHHHHHHHHhCCCcEEEEEee
Confidence 78999999999999999999999999999999876543
No 243
>PRK08506 replicative DNA helicase; Provisional
Probab=53.07 E-value=75 Score=33.02 Aligned_cols=46 Identities=13% Similarity=0.133 Sum_probs=37.7
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHHh
Q 010684 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLK 55 (504)
Q Consensus 10 ~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~ 55 (504)
.-=+++...|+.|-..-.+.+|...++.|+.|.|++.+...+.+..
T Consensus 192 G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~~ 237 (472)
T PRK08506 192 GDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLML 237 (472)
T ss_pred CceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHHH
Confidence 3356777788999999999999999889999999998876655543
No 244
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=52.65 E-value=32 Score=33.99 Aligned_cols=104 Identities=13% Similarity=0.157 Sum_probs=59.6
Q ss_pred CcEEEEEcCCCcc---cH--HHHHHHHHHHHhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCC
Q 010684 10 KVHAVCIPSPFQS---HI--KAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDES 84 (504)
Q Consensus 10 ~~~il~~~~~~~G---Hi--~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~ 84 (504)
+.-|+|.|..+.| ++ .-+.+|++.|.++|++|.+++++...+..++... . .+......
T Consensus 180 ~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~--------~-----~~~~~~~~---- 242 (348)
T PRK10916 180 RPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHEAGNEILA--------A-----LNTEQQAW---- 242 (348)
T ss_pred CCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHH--------h-----cccccccc----
Confidence 3456676644322 22 2478999999988999999887665554433200 0 00000000
Q ss_pred CCcccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEcc
Q 010684 85 PTAQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFT 152 (504)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~lgiP~v~~~~ 152 (504)
. .. +.. ...+.++..-+. +.|++|+.. .+.+.+|..+|+|+|.++.
T Consensus 243 --~------~~-l~g---~~sL~el~ali~--------~a~l~I~nD--TGp~HlAaA~g~P~valfG 288 (348)
T PRK10916 243 --C------RN-LAG---ETQLEQAVILIA--------ACKAIVTND--SGLMHVAAALNRPLVALYG 288 (348)
T ss_pred --e------ee-ccC---CCCHHHHHHHHH--------hCCEEEecC--ChHHHHHHHhCCCEEEEEC
Confidence 0 00 001 113444444443 558999774 4789999999999998864
No 245
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=52.03 E-value=53 Score=25.40 Aligned_cols=36 Identities=28% Similarity=0.315 Sum_probs=23.4
Q ss_pred HHHHHHHHHhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCC
Q 010684 27 MLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIP 74 (504)
Q Consensus 27 ~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 74 (504)
++.+|+.|.+.|+++. +++.-...+.+. |+.+..+-
T Consensus 2 ~~~~a~~l~~lG~~i~--AT~gTa~~L~~~----------Gi~~~~v~ 37 (95)
T PF02142_consen 2 IVPLAKRLAELGFEIY--ATEGTAKFLKEH----------GIEVTEVV 37 (95)
T ss_dssp HHHHHHHHHHTTSEEE--EEHHHHHHHHHT----------T--EEECC
T ss_pred HHHHHHHHHHCCCEEE--EChHHHHHHHHc----------CCCceeee
Confidence 5789999999997764 444555566665 77755553
No 246
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=51.90 E-value=75 Score=32.44 Aligned_cols=40 Identities=18% Similarity=0.125 Sum_probs=33.8
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccch
Q 010684 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNH 50 (504)
Q Consensus 11 ~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~ 50 (504)
.-|+|+-.++.|-..-...||..|.++|++|.+++...++
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 3455555668899999999999999999999999988776
No 247
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=51.78 E-value=85 Score=32.03 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=35.6
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHH-hCCCeEEEEeCccchHHHHh
Q 010684 12 HAVCIPSPFQSHIKAMLKLAKLLH-HKGFHITFVNTEFNHRRLLK 55 (504)
Q Consensus 12 ~il~~~~~~~GHi~p~l~LA~~L~-~~Gh~Vt~~~~~~~~~~~~~ 55 (504)
=+++...|+.|-..-.+.+|..++ +.|+.|.|++.+...+.+..
T Consensus 196 liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~~ 240 (421)
T TIGR03600 196 LIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGE 240 (421)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHH
Confidence 456677778899999999998887 67999999998876655543
No 248
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=51.43 E-value=74 Score=30.20 Aligned_cols=100 Identities=17% Similarity=0.204 Sum_probs=57.8
Q ss_pred EEEEEcCCCcc----cHHHHHHHHHHHHhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCCCCc
Q 010684 12 HAVCIPSPFQS----HIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTA 87 (504)
Q Consensus 12 ~il~~~~~~~G----Hi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~ 87 (504)
.|++.|..+.. ...-+..|++.|.++|++|.+++.+...+..++... .+ +. ...
T Consensus 123 ~i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~i~~--------~~-----~~--~~~------- 180 (279)
T cd03789 123 VVVLPPGASGPAKRWPAERFAALADRLLARGARVVLTGGPAERELAEEIAA--------AL-----GG--PRV------- 180 (279)
T ss_pred EEEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEechhhHHHHHHHHH--------hc-----CC--Ccc-------
Confidence 45555544322 123588999999999999999887665544433210 00 00 000
Q ss_pred ccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEccc
Q 010684 88 QDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTI 153 (504)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~lgiP~v~~~~~ 153 (504)
. .+.. ...+.++..-+. +.|++|+.. .+...+|..+|+|++.++..
T Consensus 181 ------~-~~~~---~~~l~e~~~li~--------~~~l~I~~D--sg~~HlA~a~~~p~i~l~g~ 226 (279)
T cd03789 181 ------V-NLAG---KTSLRELAALLA--------RADLVVTND--SGPMHLAAALGTPTVALFGP 226 (279)
T ss_pred ------c-cCcC---CCCHHHHHHHHH--------hCCEEEeeC--CHHHHHHHHcCCCEEEEECC
Confidence 0 0000 113344444443 458999763 36888889999999998653
No 249
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=51.17 E-value=1.3e+02 Score=25.46 Aligned_cols=26 Identities=12% Similarity=0.216 Sum_probs=21.2
Q ss_pred eEEecCCch------hHHHhhhcCCcEEecCC
Q 010684 384 GFLTHCGWN------SIVESLCSGVPMICWPF 409 (504)
Q Consensus 384 ~~I~HGG~g------s~~eal~~GvP~v~~P~ 409 (504)
++++|+|-| .+.+|...++|+|++.-
T Consensus 62 v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 62 VVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred EEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 388887644 78889999999999964
No 250
>PRK05595 replicative DNA helicase; Provisional
Probab=50.88 E-value=66 Score=33.15 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=35.0
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHH-hCCCeEEEEeCccchHHHHh
Q 010684 12 HAVCIPSPFQSHIKAMLKLAKLLH-HKGFHITFVNTEFNHRRLLK 55 (504)
Q Consensus 12 ~il~~~~~~~GHi~p~l~LA~~L~-~~Gh~Vt~~~~~~~~~~~~~ 55 (504)
=+++...|+.|-..-.+.+|..++ +.|+.|.|++.+...+.+..
T Consensus 203 liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~~ 247 (444)
T PRK05595 203 MILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLAY 247 (444)
T ss_pred EEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHHH
Confidence 455677788899999999998875 67999999998876655544
No 251
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=50.84 E-value=13 Score=32.03 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=28.6
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCcc-chHHHHhh
Q 010684 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEF-NHRRLLKA 56 (504)
Q Consensus 12 ~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~-~~~~~~~~ 56 (504)
||.++-.|..|+ ++|..|.++||+|++.+... ..+.+.+.
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~~~~~~i~~~ 41 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDEEQIEEINET 41 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCHHHHHHHHHH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccHHHHHHHHHh
Confidence 466666665554 79999999999999999764 33444443
No 252
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=50.55 E-value=75 Score=32.94 Aligned_cols=45 Identities=18% Similarity=0.297 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCC--CCCCCCC
Q 010684 25 KAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIP--DGLPASS 81 (504)
Q Consensus 25 ~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~--~~~~~~~ 81 (504)
.-.+.+|+.|.+.|+++. . +......+++. |+.+..+. .++|+..
T Consensus 11 ~~iv~lAk~L~~lGfeIi-A-TgGTak~L~e~----------GI~v~~Vsk~TgfPEil 57 (511)
T TIGR00355 11 TGIVEFAQGLVERGVELL-S-TGGTAKLLAEA----------GVPVTEVSDYTGFPEMM 57 (511)
T ss_pred ccHHHHHHHHHHCCCEEE-E-echHHHHHHHC----------CCeEEEeecccCCchhh
Confidence 347889999999999994 4 44556666666 78777775 5777763
No 253
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=50.11 E-value=1.7e+02 Score=25.31 Aligned_cols=27 Identities=15% Similarity=0.178 Sum_probs=22.4
Q ss_pred ceEEecCCch------hHHHhhhcCCcEEecCC
Q 010684 383 GGFLTHCGWN------SIVESLCSGVPMICWPF 409 (504)
Q Consensus 383 ~~~I~HGG~g------s~~eal~~GvP~v~~P~ 409 (504)
+++++|+|-| .+.+|...++|||++.-
T Consensus 65 ~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g 97 (164)
T cd07039 65 GVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAG 97 (164)
T ss_pred EEEEECCCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence 3488888855 78899999999999974
No 254
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=50.09 E-value=1.5e+02 Score=29.09 Aligned_cols=44 Identities=14% Similarity=0.110 Sum_probs=37.3
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHH
Q 010684 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRL 53 (504)
Q Consensus 10 ~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~ 53 (504)
+--|+|+=.-+.|-....-.||..|.+.|+.|.++...-|+...
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaA 182 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAA 182 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHH
Confidence 45566666679999999999999999999999999998876533
No 255
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=49.54 E-value=2e+02 Score=30.00 Aligned_cols=47 Identities=9% Similarity=-0.029 Sum_probs=38.7
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHHhh
Q 010684 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKA 56 (504)
Q Consensus 10 ~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~ 56 (504)
..-+++.--|+.|-..-.+.++...+++|..|.+++.+...+++...
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~ 309 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRN 309 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHH
Confidence 44566666778899999999999999999999999988777666554
No 256
>PRK06321 replicative DNA helicase; Provisional
Probab=49.06 E-value=1.1e+02 Score=31.75 Aligned_cols=44 Identities=11% Similarity=0.203 Sum_probs=35.5
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHH-hCCCeEEEEeCccchHHHHh
Q 010684 12 HAVCIPSPFQSHIKAMLKLAKLLH-HKGFHITFVNTEFNHRRLLK 55 (504)
Q Consensus 12 ~il~~~~~~~GHi~p~l~LA~~L~-~~Gh~Vt~~~~~~~~~~~~~ 55 (504)
=|++...|+.|-....+.+|...+ +.|..|.|++-+...+.+..
T Consensus 228 LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~~ 272 (472)
T PRK06321 228 LMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIH 272 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHH
Confidence 456777889999999999999987 46999999998876655544
No 257
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=49.02 E-value=22 Score=31.37 Aligned_cols=115 Identities=17% Similarity=0.150 Sum_probs=61.0
Q ss_pred cccHHHHHHHHHHH-HhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCCCC----------CCCCCC------C
Q 010684 21 QSHIKAMLKLAKLL-HHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDG----------LPASSD------E 83 (504)
Q Consensus 21 ~GHi~p~l~LA~~L-~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~----------~~~~~~------~ 83 (504)
.+.+.-.+..|+.| .+.|.+|.+..+ ...+.+++.. ++.+..++.. ...... .
T Consensus 16 ~~~~e~~v~~a~~~~~~~g~dViIsRG-~ta~~lr~~~---------~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~ 85 (176)
T PF06506_consen 16 EASLEEAVEEARQLLESEGADVIISRG-GTAELLRKHV---------SIPVVEIPISGFDILRALAKAKKYGPKIAVVGY 85 (176)
T ss_dssp E--HHHHHHHHHHHHTTTT-SEEEEEH-HHHHHHHCC----------SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEE
T ss_pred EecHHHHHHHHHHhhHhcCCeEEEECC-HHHHHHHHhC---------CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEec
Confidence 35677788999999 888999997765 4455555441 4444444410 000000 0
Q ss_pred CCCcccHHHHHHHHHHhh-------cchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEccccH
Q 010684 84 SPTAQDAYSLGENIINNV-------LLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISA 155 (504)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~-------~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~ 155 (504)
.....++..+...+ ..- -...+...+..+... ++|+||.+. .+..+|+++|+|++.+.+...
T Consensus 86 ~~~~~~~~~~~~ll-~~~i~~~~~~~~~e~~~~i~~~~~~------G~~viVGg~---~~~~~A~~~gl~~v~i~sg~e 154 (176)
T PF06506_consen 86 PNIIPGLESIEELL-GVDIKIYPYDSEEEIEAAIKQAKAE------GVDVIVGGG---VVCRLARKLGLPGVLIESGEE 154 (176)
T ss_dssp SS-SCCHHHHHHHH-T-EEEEEEESSHHHHHHHHHHHHHT------T--EEEESH---HHHHHHHHTTSEEEESS--HH
T ss_pred ccccHHHHHHHHHh-CCceEEEEECCHHHHHHHHHHHHHc------CCcEEECCH---HHHHHHHHcCCcEEEEEecHH
Confidence 00111222222222 110 024566777777766 999999997 357899999999999876443
No 258
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.80 E-value=88 Score=30.22 Aligned_cols=55 Identities=18% Similarity=0.329 Sum_probs=39.6
Q ss_pred cCCCcceEEecCCchhHHHhhhc----CCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCc
Q 010684 378 KHPSIGGFLTHCGWNSIVESLCS----GVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE 453 (504)
Q Consensus 378 ~~~~~~~~I~HGG~gs~~eal~~----GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~ 453 (504)
..+++ +|+=||-||+.++++. ++|++.+... + +|. + ..++++++.++|.+++++.
T Consensus 61 ~~~d~--vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G------------~--lGF-l----~~~~~~~~~~~l~~~~~g~ 119 (295)
T PRK01231 61 EVCDL--VIVVGGDGSLLGAARALARHNVPVLGINRG------------R--LGF-L----TDIRPDELEFKLAEVLDGH 119 (295)
T ss_pred cCCCE--EEEEeCcHHHHHHHHHhcCCCCCEEEEeCC------------c--ccc-c----ccCCHHHHHHHHHHHHcCC
Confidence 34667 9999999999999763 6677766541 1 221 1 2567899999999998764
No 259
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=48.55 E-value=2.2e+02 Score=26.16 Aligned_cols=32 Identities=13% Similarity=0.010 Sum_probs=27.9
Q ss_pred CCCcccHHHHHHHHHHHHhCCCeEEEEeCccc
Q 010684 18 SPFQSHIKAMLKLAKLLHHKGFHITFVNTEFN 49 (504)
Q Consensus 18 ~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~ 49 (504)
-|+-|-..-.+.||..|+++|++|.++-....
T Consensus 10 KGGvGKTt~a~nla~~la~~g~~VlliD~D~q 41 (246)
T TIGR03371 10 KGGVGKTTLTANLASALKLLGEPVLAIDLDPQ 41 (246)
T ss_pred CCCccHHHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 46779999999999999999999999976553
No 260
>PLN02939 transferase, transferring glycosyl groups
Probab=48.34 E-value=35 Score=38.41 Aligned_cols=41 Identities=24% Similarity=0.350 Sum_probs=30.9
Q ss_pred CCCcEEEEEcCCC-----c-ccHHHHHHHHHHHHhCCCeEEEEeCcc
Q 010684 8 CSKVHAVCIPSPF-----Q-SHIKAMLKLAKLLHHKGFHITFVNTEF 48 (504)
Q Consensus 8 ~~~~~il~~~~~~-----~-GHi~p~l~LA~~L~~~Gh~Vt~~~~~~ 48 (504)
.++|||+|++.-. . |=-.-.-.|.++|++.||+|.+++|..
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y 525 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKY 525 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 4589999987532 1 222346689999999999999999865
No 261
>PRK05920 aromatic acid decarboxylase; Validated
Probab=48.23 E-value=38 Score=30.66 Aligned_cols=44 Identities=11% Similarity=0.067 Sum_probs=35.5
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHH
Q 010684 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLL 54 (504)
Q Consensus 10 ~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~ 54 (504)
.+||++.-.|+-+= +=...+.+.|.+.||+|+++.++.-.+.+.
T Consensus 3 ~krIllgITGsiaa-~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~ 46 (204)
T PRK05920 3 MKRIVLAITGASGA-IYGVRLLECLLAADYEVHLVISKAAQKVLA 46 (204)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEEEChhHHHHHH
Confidence 56888887776655 578899999999999999999877665554
No 262
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=48.09 E-value=2.3e+02 Score=29.18 Aligned_cols=34 Identities=9% Similarity=0.065 Sum_probs=26.5
Q ss_pred EEEEcCCC-cccHHHHHHHHHHHHhCCCeEEEEeC
Q 010684 13 AVCIPSPF-QSHIKAMLKLAKLLHHKGFHITFVNT 46 (504)
Q Consensus 13 il~~~~~~-~GHi~p~l~LA~~L~~~Gh~Vt~~~~ 46 (504)
|++....+ -|-..-...|++.|+++|++|..+-+
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~ 36 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKV 36 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEcc
Confidence 34443333 48899999999999999999998854
No 263
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=48.00 E-value=1.2e+02 Score=31.12 Aligned_cols=43 Identities=14% Similarity=0.114 Sum_probs=34.2
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHH-hCCCeEEEEeCccchHH
Q 010684 10 KVHAVCIPSPFQSHIKAMLKLAKLLH-HKGFHITFVNTEFNHRR 52 (504)
Q Consensus 10 ~~~il~~~~~~~GHi~p~l~LA~~L~-~~Gh~Vt~~~~~~~~~~ 52 (504)
+.-|+++-.++.|-..-...||..|. ++|..|.+++...++..
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~ 142 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA 142 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH
Confidence 33455666667799999999999997 68999999998876543
No 264
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=47.90 E-value=24 Score=32.61 Aligned_cols=20 Identities=25% Similarity=0.288 Sum_probs=17.5
Q ss_pred HHHHHHHHHhCCCeEEEEeC
Q 010684 27 MLKLAKLLHHKGFHITFVNT 46 (504)
Q Consensus 27 ~l~LA~~L~~~Gh~Vt~~~~ 46 (504)
..+||++|.++||+|+++..
T Consensus 29 G~aLA~~L~~~G~~V~li~r 48 (229)
T PRK06732 29 GKIIAETFLAAGHEVTLVTT 48 (229)
T ss_pred HHHHHHHHHhCCCEEEEEEC
Confidence 47889999999999999874
No 265
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=47.85 E-value=23 Score=36.60 Aligned_cols=62 Identities=11% Similarity=0.152 Sum_probs=42.2
Q ss_pred hHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCchHHHHHHHHHH
Q 010684 393 SIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAME 464 (504)
Q Consensus 393 s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~ 464 (504)
++.||+++|+|+++.=-. .-+.-+ ...--|.-++. ..-....+++++.++.+|+ +++.++.+
T Consensus 381 v~IEAMa~glPvvAt~~G----GP~EiV-~~~~tG~l~dp--~~e~~~~~a~~~~kl~~~p---~l~~~~~~ 442 (495)
T KOG0853|consen 381 VPIEAMACGLPVVATNNG----GPAEIV-VHGVTGLLIDP--GQEAVAELADALLKLRRDP---ELWARMGK 442 (495)
T ss_pred eeHHHHhcCCCEEEecCC----CceEEE-EcCCcceeeCC--chHHHHHHHHHHHHHhcCH---HHHHHHHH
Confidence 789999999999986332 223334 44455766664 3333347999999999999 66655543
No 266
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=47.53 E-value=2.2e+02 Score=25.96 Aligned_cols=34 Identities=15% Similarity=0.145 Sum_probs=28.6
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 010684 13 AVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNT 46 (504)
Q Consensus 13 il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~ 46 (504)
|++.-+|+.|-....-.||++|.+++|+|.-.+.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 4555567889999999999999999999986654
No 267
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=47.39 E-value=2e+02 Score=25.32 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=21.2
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCe
Q 010684 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFH 40 (504)
Q Consensus 11 ~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~ 40 (504)
|||+|+.++.. ..+..+.++|.+++|+
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~ 27 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHN 27 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSE
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCC
Confidence 68999977655 4566677899999997
No 268
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=47.22 E-value=58 Score=33.64 Aligned_cols=36 Identities=17% Similarity=0.299 Sum_probs=27.4
Q ss_pred cEEEEEc-CCC-cccHHHHHHHHHHHHhCCCeEEEEeC
Q 010684 11 VHAVCIP-SPF-QSHIKAMLKLAKLLHHKGFHITFVNT 46 (504)
Q Consensus 11 ~~il~~~-~~~-~GHi~p~l~LA~~L~~~Gh~Vt~~~~ 46 (504)
|+-+|++ ..+ -|-..-...|++.|+++|++|..+-+
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~ 40 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKV 40 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeec
Confidence 4434444 333 38999999999999999999998865
No 269
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.68 E-value=35 Score=32.63 Aligned_cols=54 Identities=15% Similarity=0.246 Sum_probs=37.1
Q ss_pred CCCcceEEecCCchhHHHhhh---cCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCc
Q 010684 379 HPSIGGFLTHCGWNSIVESLC---SGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE 453 (504)
Q Consensus 379 ~~~~~~~I~HGG~gs~~eal~---~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~ 453 (504)
.+++ +|.-||-||+.++++ .++|+++++.. .+ |.- ..++++++.+++.+++++.
T Consensus 57 ~~d~--vi~iGGDGTlL~a~~~~~~~~pi~gIn~G------------~l--GFl-----~~~~~~~~~~~l~~i~~g~ 113 (277)
T PRK03708 57 DVDF--IIAIGGDGTILRIEHKTKKDIPILGINMG------------TL--GFL-----TEVEPEETFFALSRLLEGD 113 (277)
T ss_pred CCCE--EEEEeCcHHHHHHHHhcCCCCeEEEEeCC------------CC--Ccc-----ccCCHHHHHHHHHHHHcCC
Confidence 4566 999999999999985 34577777652 11 111 2345678888888888665
No 270
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=46.48 E-value=33 Score=30.46 Aligned_cols=42 Identities=17% Similarity=0.201 Sum_probs=33.9
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHH
Q 010684 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRL 53 (504)
Q Consensus 11 ~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~ 53 (504)
+||++.-.|+-|=+. ...+.+.|+++|++|.++.++.-...+
T Consensus 2 k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A~~fi 43 (182)
T PRK07313 2 KNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAATKFI 43 (182)
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhHHHHc
Confidence 478888888877776 799999999999999998887654443
No 271
>PLN02470 acetolactate synthase
Probab=46.39 E-value=2.9e+02 Score=29.61 Aligned_cols=90 Identities=13% Similarity=0.084 Sum_probs=53.8
Q ss_pred ecCCccccC--HHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHhhc--cCcEEEeecc-hHhh-------hc
Q 010684 311 NFGSFIFMN--KQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAK--EKGFVASWCP-QEEV-------LK 378 (504)
Q Consensus 311 s~GS~~~~~--~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~nv~~~~~vp-q~~l-------L~ 378 (504)
+|||..... ...-..+++.|++.|.+.++-+.+... ..+.+.+. ++++++.--. +... ..
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~--------~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~ 73 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGAS--------MEIHQALTRSNCIRNVLCRHEQGEVFAAEGYAKA 73 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCccc--------HHHHHHHhccCCceEEEeccHHHHHHHHHHHHHH
Confidence 567764222 233567888899999999988876621 23333321 2344332111 1111 11
Q ss_pred CCCcceEEecCCch------hHHHhhhcCCcEEecC
Q 010684 379 HPSIGGFLTHCGWN------SIVESLCSGVPMICWP 408 (504)
Q Consensus 379 ~~~~~~~I~HGG~g------s~~eal~~GvP~v~~P 408 (504)
.-.++++++|.|-| .+++|...++|||++.
T Consensus 74 tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 74 SGKVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred hCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 12355588998855 7899999999999995
No 272
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=46.39 E-value=2.4e+02 Score=25.96 Aligned_cols=35 Identities=11% Similarity=0.188 Sum_probs=28.5
Q ss_pred cEEEEEcCCCc--ccHHHHHHHHHHHHhCCCeEEEEe
Q 010684 11 VHAVCIPSPFQ--SHIKAMLKLAKLLHHKGFHITFVN 45 (504)
Q Consensus 11 ~~il~~~~~~~--GHi~p~l~LA~~L~~~Gh~Vt~~~ 45 (504)
|+.+|++.--. |-..-.-.|++.|+++|++|..+=
T Consensus 2 ~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~K 38 (223)
T COG0132 2 MKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGYK 38 (223)
T ss_pred CceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEEC
Confidence 45666666544 999999999999999999999864
No 273
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=46.30 E-value=2e+02 Score=28.54 Aligned_cols=85 Identities=20% Similarity=0.213 Sum_probs=54.2
Q ss_pred ccCHHHHHHHHHHH-HhC-CCCEEEEEcCCCCCCCCCCCchHHHH--hhccCcEEEeecchHh---hhcCCCcceEEecC
Q 010684 317 FMNKQQLIEVAMGL-VNS-NHPFLWIIRPDLVTGETADLPAEFEV--KAKEKGFVASWCPQEE---VLKHPSIGGFLTHC 389 (504)
Q Consensus 317 ~~~~~~~~~~~~a~-~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~nv~~~~~vpq~~---lL~~~~~~~~I~HG 389 (504)
+...+++..++..+ .+. ..+|+..-.+.+..+ + ++..+ .+.+++.+.+-+|++. +|..-++ |++-.
T Consensus 207 rKGiDll~~iIp~vc~~~p~vrfii~GDGPk~i~----l-ee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~I--FlntS 279 (426)
T KOG1111|consen 207 RKGIDLLLEIIPSVCDKHPEVRFIIIGDGPKRID----L-EEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDI--FLNTS 279 (426)
T ss_pred ccchHHHHHHHHHHHhcCCCeeEEEecCCcccch----H-HHHHHHhhccCceEEecccchHHHHHHHhcCcE--EeccH
Confidence 34456665555444 434 367776665553221 1 22222 3568999999999875 7888888 88654
Q ss_pred C----chhHHHhhhcCCcEEecC
Q 010684 390 G----WNSIVESLCSGVPMICWP 408 (504)
Q Consensus 390 G----~gs~~eal~~GvP~v~~P 408 (504)
= .-++.||.++|.|+|..=
T Consensus 280 lTEafc~~ivEAaScGL~VVsTr 302 (426)
T KOG1111|consen 280 LTEAFCMVIVEAASCGLPVVSTR 302 (426)
T ss_pred HHHHHHHHHHHHHhCCCEEEEee
Confidence 2 236789999999998643
No 274
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=46.09 E-value=47 Score=32.01 Aligned_cols=55 Identities=16% Similarity=0.315 Sum_probs=38.9
Q ss_pred cCCCcceEEecCCchhHHHhhhc----CCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCc
Q 010684 378 KHPSIGGFLTHCGWNSIVESLCS----GVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE 453 (504)
Q Consensus 378 ~~~~~~~~I~HGG~gs~~eal~~----GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~ 453 (504)
..+++ +|+.||-||+.++++. ++|++.+-. .. +|.- ..++.+++.++|.++++++
T Consensus 62 ~~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn~------------G~--lGFL-----~~~~~~~~~~~l~~~~~g~ 120 (291)
T PRK02155 62 ARADL--AVVLGGDGTMLGIGRQLAPYGVPLIGINH------------GR--LGFI-----TDIPLDDMQETLPPMLAGN 120 (291)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcC------------CC--cccc-----ccCCHHHHHHHHHHHHcCC
Confidence 35677 9999999999999874 567665542 12 1211 2466788999999988765
No 275
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=45.98 E-value=51 Score=32.05 Aligned_cols=40 Identities=13% Similarity=0.088 Sum_probs=30.3
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHHh
Q 010684 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLK 55 (504)
Q Consensus 10 ~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~ 55 (504)
+|||+++=.|+.|- .+|..|++.||+|++++-.. .+.+.+
T Consensus 5 ~m~I~IiG~GaiG~-----~lA~~L~~~g~~V~~~~r~~-~~~~~~ 44 (313)
T PRK06249 5 TPRIGIIGTGAIGG-----FYGAMLARAGFDVHFLLRSD-YEAVRE 44 (313)
T ss_pred CcEEEEECCCHHHH-----HHHHHHHHCCCeEEEEEeCC-HHHHHh
Confidence 57999998777774 46788999999999998654 344443
No 276
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=45.94 E-value=56 Score=28.41 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=16.3
Q ss_pred cHHHHHHHHHHHHh-CC--CeEEEE
Q 010684 23 HIKAMLKLAKLLHH-KG--FHITFV 44 (504)
Q Consensus 23 Hi~p~l~LA~~L~~-~G--h~Vt~~ 44 (504)
|...-.+|+++|.+ +| .+|.++
T Consensus 1 H~~aA~Al~eal~~~~~~~~~v~v~ 25 (169)
T PF06925_consen 1 HNSAARALAEALERRRGPDAEVEVV 25 (169)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 77888999999988 45 455543
No 277
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=45.86 E-value=1.8e+02 Score=29.81 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=21.2
Q ss_pred ceEEecCCch------hHHHhhhcCCcEEec
Q 010684 383 GGFLTHCGWN------SIVESLCSGVPMICW 407 (504)
Q Consensus 383 ~~~I~HGG~g------s~~eal~~GvP~v~~ 407 (504)
+++++|.|-| .+++|.+.++|+|++
T Consensus 65 gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i 95 (432)
T TIGR00173 65 VAVVCTSGTAVANLLPAVIEASYSGVPLIVL 95 (432)
T ss_pred EEEEECCcchHhhhhHHHHHhcccCCcEEEE
Confidence 3388888855 778999999999999
No 278
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=45.28 E-value=41 Score=32.40 Aligned_cols=39 Identities=13% Similarity=0.100 Sum_probs=28.4
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHH
Q 010684 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLL 54 (504)
Q Consensus 11 ~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~ 54 (504)
|||+++=.|+.| ..+|..|+++||+|+++..+...+.+.
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r~~~~~~~~ 39 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVRPKRAKALR 39 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEecHHHHHHHH
Confidence 578888777766 457888999999999998633333333
No 279
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.41 E-value=43 Score=32.30 Aligned_cols=58 Identities=12% Similarity=0.216 Sum_probs=40.0
Q ss_pred hhhcCCCcceEEecCCchhHHHhhh----cCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHh
Q 010684 375 EVLKHPSIGGFLTHCGWNSIVESLC----SGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMM 450 (504)
Q Consensus 375 ~lL~~~~~~~~I~HGG~gs~~eal~----~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl 450 (504)
++...+++ +|+=||-||+..+++ +++|++.+-. -. +|.- ..++++++.+++.+++
T Consensus 59 ~~~~~~d~--vi~lGGDGT~L~aa~~~~~~~~Pilgin~------------G~--lGFl-----~~~~~~~~~~~l~~i~ 117 (292)
T PRK03378 59 EIGQQADL--AIVVGGDGNMLGAARVLARYDIKVIGINR------------GN--LGFL-----TDLDPDNALQQLSDVL 117 (292)
T ss_pred hcCCCCCE--EEEECCcHHHHHHHHHhcCCCCeEEEEEC------------CC--CCcc-----cccCHHHHHHHHHHHH
Confidence 33445677 999999999999985 3667766543 11 1221 2455789999999998
Q ss_pred cCc
Q 010684 451 EGE 453 (504)
Q Consensus 451 ~~~ 453 (504)
++.
T Consensus 118 ~g~ 120 (292)
T PRK03378 118 EGH 120 (292)
T ss_pred cCC
Confidence 765
No 280
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=44.11 E-value=77 Score=29.91 Aligned_cols=29 Identities=17% Similarity=0.225 Sum_probs=22.7
Q ss_pred CeeEEEEcCCc------chHHHHHHHcCCCeEEEc
Q 010684 123 AVSCIISDGFL------PFTITAAQQLGLPIVLFF 151 (504)
Q Consensus 123 ~~DlvI~D~~~------~~~~~~A~~lgiP~v~~~ 151 (504)
++|+|++..-. .-+..+|+.||+|++.+.
T Consensus 111 ~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v 145 (260)
T COG2086 111 GPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYV 145 (260)
T ss_pred CCCEEEEecccccCCccchHHHHHHHhCCceeeeE
Confidence 88999954322 268999999999999864
No 281
>PLN02924 thymidylate kinase
Probab=44.10 E-value=2.6e+02 Score=25.64 Aligned_cols=45 Identities=18% Similarity=0.093 Sum_probs=33.0
Q ss_pred CCCCCCCCCCcE-EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 010684 1 MESKPKACSKVH-AVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVN 45 (504)
Q Consensus 1 ~~~~~~~~~~~~-il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~ 45 (504)
|++-+++.++.. |+|-=..+.|--.=.-.|++.|..+|+.|.+..
T Consensus 6 ~~~~~~~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ 51 (220)
T PLN02924 6 METESSVESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWR 51 (220)
T ss_pred cCCCCCcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeee
Confidence 566655555555 444445577999999999999999999986554
No 282
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=43.89 E-value=40 Score=31.73 Aligned_cols=30 Identities=10% Similarity=0.126 Sum_probs=24.3
Q ss_pred CeeEEEEcCCcc------hHHHHHHHcCCCeEEEcc
Q 010684 123 AVSCIISDGFLP------FTITAAQQLGLPIVLFFT 152 (504)
Q Consensus 123 ~~DlvI~D~~~~------~~~~~A~~lgiP~v~~~~ 152 (504)
+||+|++..... -+..+|+.||+|++.+..
T Consensus 112 ~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~ 147 (256)
T PRK03359 112 GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVS 147 (256)
T ss_pred CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEE
Confidence 799999765432 688899999999998654
No 283
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.73 E-value=61 Score=31.31 Aligned_cols=58 Identities=16% Similarity=0.194 Sum_probs=41.1
Q ss_pred hhhcCCCcceEEecCCchhHHHhhh----cCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHh
Q 010684 375 EVLKHPSIGGFLTHCGWNSIVESLC----SGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMM 450 (504)
Q Consensus 375 ~lL~~~~~~~~I~HGG~gs~~eal~----~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl 450 (504)
++...+++ +|+=||-||+..+.+ .++|++.+-.. + +|.- ..++.+++.++|.+++
T Consensus 64 ~~~~~~D~--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G------------~--lGFL-----~~~~~~~~~~~l~~i~ 122 (296)
T PRK04539 64 ELGQYCDL--VAVLGGDGTFLSVAREIAPRAVPIIGINQG------------H--LGFL-----TQIPREYMTDKLLPVL 122 (296)
T ss_pred hcCcCCCE--EEEECCcHHHHHHHHHhcccCCCEEEEecC------------C--CeEe-----eccCHHHHHHHHHHHH
Confidence 33345777 999999999999975 36788776431 1 2322 2356789999999999
Q ss_pred cCc
Q 010684 451 EGE 453 (504)
Q Consensus 451 ~~~ 453 (504)
++.
T Consensus 123 ~g~ 125 (296)
T PRK04539 123 EGK 125 (296)
T ss_pred cCC
Confidence 765
No 284
>PRK09620 hypothetical protein; Provisional
Probab=43.72 E-value=37 Score=31.40 Aligned_cols=38 Identities=13% Similarity=0.106 Sum_probs=27.2
Q ss_pred CcEEEEEcCCCcccHHH------------HHHHHHHHHhCCCeEEEEeCc
Q 010684 10 KVHAVCIPSPFQSHIKA------------MLKLAKLLHHKGFHITFVNTE 47 (504)
Q Consensus 10 ~~~il~~~~~~~GHi~p------------~l~LA~~L~~~Gh~Vt~~~~~ 47 (504)
.++|++...|++=.+.| ...||++|.++|++|+++...
T Consensus 3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 56777665554443332 478999999999999999753
No 285
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=43.71 E-value=3.2e+02 Score=26.71 Aligned_cols=28 Identities=25% Similarity=0.358 Sum_probs=23.4
Q ss_pred CeeEEEEcCCcchHHHHHHHcCCCeEEEcc
Q 010684 123 AVSCIISDGFLPFTITAAQQLGLPIVLFFT 152 (504)
Q Consensus 123 ~~DlvI~D~~~~~~~~~A~~lgiP~v~~~~ 152 (504)
+.|++|+. ..+.+.+|..+|+|+|.++.
T Consensus 260 ~a~l~Vs~--DSGp~HlAaA~g~p~v~Lfg 287 (344)
T TIGR02201 260 HARLFIGV--DSVPMHMAAALGTPLVALFG 287 (344)
T ss_pred hCCEEEec--CCHHHHHHHHcCCCEEEEEC
Confidence 55899977 45789999999999999764
No 286
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=43.62 E-value=48 Score=32.50 Aligned_cols=28 Identities=18% Similarity=0.330 Sum_probs=21.1
Q ss_pred CeeEEEEcCCcch----------HHHHHHHcCCCeEEE
Q 010684 123 AVSCIISDGFLPF----------TITAAQQLGLPIVLF 150 (504)
Q Consensus 123 ~~DlvI~D~~~~~----------~~~~A~~lgiP~v~~ 150 (504)
+||++|+.+.|.+ +..+.++++||.+.-
T Consensus 80 ~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 80 KPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred CCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 9999999987651 223457899999874
No 287
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.30 E-value=48 Score=31.83 Aligned_cols=58 Identities=17% Similarity=0.329 Sum_probs=39.6
Q ss_pred hhhcCCCcceEEecCCchhHHHhhhc----CCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHh
Q 010684 375 EVLKHPSIGGFLTHCGWNSIVESLCS----GVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMM 450 (504)
Q Consensus 375 ~lL~~~~~~~~I~HGG~gs~~eal~~----GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl 450 (504)
++...+++ +|+-||-||+..+++. ++|++.+-. - . +|. + ..++++++.+++.+++
T Consensus 60 ~~~~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGIN~--------G----~--lGF-L----t~~~~~~~~~~l~~i~ 118 (287)
T PRK14077 60 ELFKISDF--LISLGGDGTLISLCRKAAEYDKFVLGIHA--------G----H--LGF-L----TDITVDEAEKFFQAFF 118 (287)
T ss_pred hcccCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEEeC--------C----C--ccc-C----CcCCHHHHHHHHHHHH
Confidence 34445777 9999999999988663 677766543 1 1 222 1 2466788888998888
Q ss_pred cCc
Q 010684 451 EGE 453 (504)
Q Consensus 451 ~~~ 453 (504)
+++
T Consensus 119 ~g~ 121 (287)
T PRK14077 119 QGE 121 (287)
T ss_pred cCC
Confidence 764
No 288
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=43.20 E-value=1.6e+02 Score=30.21 Aligned_cols=26 Identities=19% Similarity=0.510 Sum_probs=22.5
Q ss_pred CeeEEEEcCCcchHHHHHHHcCCCeEEEc
Q 010684 123 AVSCIISDGFLPFTITAAQQLGLPIVLFF 151 (504)
Q Consensus 123 ~~DlvI~D~~~~~~~~~A~~lgiP~v~~~ 151 (504)
++|++|.++. ...+|+++|||++.+.
T Consensus 372 ~~dliiG~s~---~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 372 KIDVLIGNSY---GRRIAEKLGIPLIRIG 397 (429)
T ss_pred CCCEEEECch---hHHHHHHcCCCEEEec
Confidence 8999999974 5789999999998764
No 289
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=43.15 E-value=3.4e+02 Score=26.83 Aligned_cols=82 Identities=20% Similarity=0.240 Sum_probs=60.3
Q ss_pred cCcEE-EeecchH---hhhcCCCcceEEec--CCchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCC
Q 010684 363 EKGFV-ASWCPQE---EVLKHPSIGGFLTH--CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDED 436 (504)
Q Consensus 363 ~nv~~-~~~vpq~---~lL~~~~~~~~I~H--GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~ 436 (504)
+++.+ .+++|.+ .+|..|+++.|.|. =|.|++.-.|+.|+|+++-- +=+.|-... +.|+-+-... +.
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~---~np~~~~l~--~~~ipVlf~~--d~ 317 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSR---DNPFWQDLK--EQGIPVLFYG--DE 317 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEec---CChHHHHHH--hCCCeEEecc--cc
Confidence 47765 4688855 58999999666664 58999999999999998642 333444433 4477766654 78
Q ss_pred ccHHHHHHHHHHHhc
Q 010684 437 VIRNEVEKLVREMME 451 (504)
Q Consensus 437 ~~~~~l~~ai~~vl~ 451 (504)
++.+.|.++=+++..
T Consensus 318 L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 318 LDEALVREAQRQLAN 332 (360)
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999998887775
No 290
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=43.12 E-value=2.1e+02 Score=30.48 Aligned_cols=77 Identities=10% Similarity=0.024 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHhhc--cCcEEEeecc-hHh---------hhcCCCcceEEecC
Q 010684 322 QLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAK--EKGFVASWCP-QEE---------VLKHPSIGGFLTHC 389 (504)
Q Consensus 322 ~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~nv~~~~~vp-q~~---------lL~~~~~~~~I~HG 389 (504)
.-..+++.|++.|.+.++-+.+.. -..+.+.+. +++..+.--. +.. +-.++.+ +++|.
T Consensus 15 ~~~~l~~~L~~~GV~~vFgvpG~~--------~~~l~dal~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv--~~~t~ 84 (564)
T PRK08155 15 GAELIVRLLERQGIRIVTGIPGGA--------ILPLYDALSQSTQIRHILARHEQGAGFIAQGMARTTGKPAV--CMACS 84 (564)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCcc--------cHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHcCCCeE--EEECC
Confidence 356688888888888888776652 122333332 2333332111 111 1123444 88887
Q ss_pred Cch------hHHHhhhcCCcEEecC
Q 010684 390 GWN------SIVESLCSGVPMICWP 408 (504)
Q Consensus 390 G~g------s~~eal~~GvP~v~~P 408 (504)
|-| .++||-..++|+|++.
T Consensus 85 GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 85 GPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 754 7899999999999985
No 291
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=43.01 E-value=3.4e+02 Score=30.12 Aligned_cols=40 Identities=13% Similarity=0.126 Sum_probs=31.5
Q ss_pred CcEEEEEcCC--CcccHHHHHHHHHHHHhCCCeEEEEeCccc
Q 010684 10 KVHAVCIPSP--FQSHIKAMLKLAKLLHHKGFHITFVNTEFN 49 (504)
Q Consensus 10 ~~~il~~~~~--~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~ 49 (504)
+.|++.++.+ +-|-..-...||..|++.|++|.++-....
T Consensus 545 ~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~ 586 (754)
T TIGR01005 545 EPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGR 586 (754)
T ss_pred CceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 4466666554 559999999999999999999999976543
No 292
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=42.84 E-value=2.9e+02 Score=30.37 Aligned_cols=35 Identities=20% Similarity=0.281 Sum_probs=28.9
Q ss_pred EEEEEcCCC-cccHHHHHHHHHHHHhCCCeEEEEeC
Q 010684 12 HAVCIPSPF-QSHIKAMLKLAKLLHHKGFHITFVNT 46 (504)
Q Consensus 12 ~il~~~~~~-~GHi~p~l~LA~~L~~~Gh~Vt~~~~ 46 (504)
.|++.+..+ .|-..-.+.|++.|.++|.+|.++=|
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKP 39 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKP 39 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCC
Confidence 466665555 49999999999999999999998753
No 293
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=42.76 E-value=48 Score=30.82 Aligned_cols=45 Identities=16% Similarity=0.109 Sum_probs=29.8
Q ss_pred CCCCCCCCCCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 010684 1 MESKPKACSKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVN 45 (504)
Q Consensus 1 ~~~~~~~~~~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~ 45 (504)
|.++.+....++|+++.-=..=-..-+-.....|.++||+|++++
T Consensus 1 ~~~~~~~~~~~~vL~v~aHPDDe~~g~ggtla~~~~~G~~V~v~~ 45 (237)
T COG2120 1 MTSLPPMLDPLRVLVVFAHPDDEEIGCGGTLAKLAARGVEVTVVC 45 (237)
T ss_pred CCCccccccCCcEEEEecCCcchhhccHHHHHHHHHCCCeEEEEE
Confidence 445555655777776654333333455666677799999999988
No 294
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=42.71 E-value=1.3e+02 Score=29.01 Aligned_cols=83 Identities=17% Similarity=0.103 Sum_probs=46.3
Q ss_pred hhhhccccCCCCCeeEEEecCCccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHhhccCcEEEeecc
Q 010684 293 TECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCP 372 (504)
Q Consensus 293 ~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vp 372 (504)
.++.+...+..-+++-.-........+.+.+..++++++++|..+++-+|.... +.++ ... ...|
T Consensus 116 ~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~-------~~~~-----~~~---~~~p 180 (293)
T COG2159 116 EELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPG-------GAGL-----EKG---HSDP 180 (293)
T ss_pred HHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCC-------Cccc-----ccC---CCCc
Confidence 344455544322333332333333445556788999999999999987764421 0000 000 1122
Q ss_pred ---hHhhhcCCCcceEEecCC
Q 010684 373 ---QEEVLKHPSIGGFLTHCG 390 (504)
Q Consensus 373 ---q~~lL~~~~~~~~I~HGG 390 (504)
..-.-+.|+++.++.|+|
T Consensus 181 ~~~~~va~~fP~l~IVl~H~G 201 (293)
T COG2159 181 LYLDDVARKFPELKIVLGHMG 201 (293)
T ss_pred hHHHHHHHHCCCCcEEEEecC
Confidence 223455789999999999
No 295
>PRK13604 luxD acyl transferase; Provisional
Probab=42.66 E-value=59 Score=31.51 Aligned_cols=36 Identities=28% Similarity=0.444 Sum_probs=31.0
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEE
Q 010684 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFV 44 (504)
Q Consensus 9 ~~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~ 44 (504)
.+.+.+++..|..++-.-+..+|+.|.++|+.|..+
T Consensus 35 ~~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrf 70 (307)
T PRK13604 35 KKNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRY 70 (307)
T ss_pred CCCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEe
Confidence 355788888988888777999999999999999866
No 296
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=42.59 E-value=33 Score=35.47 Aligned_cols=41 Identities=12% Similarity=0.179 Sum_probs=34.5
Q ss_pred CCCcEEEEEcCCCcccHHH------------HHHHHHHHHhCCCeEEEEeCcc
Q 010684 8 CSKVHAVCIPSPFQSHIKA------------MLKLAKLLHHKGFHITFVNTEF 48 (504)
Q Consensus 8 ~~~~~il~~~~~~~GHi~p------------~l~LA~~L~~~Gh~Vt~~~~~~ 48 (504)
-+.+||++...|++=.+.| ..+||+++..+|++||+++++.
T Consensus 254 l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 254 LAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred cCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 3578999888888877776 5789999999999999998754
No 297
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=42.58 E-value=44 Score=31.57 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCccchH
Q 010684 25 KAMLKLAKLLHHKGFHITFVNTEFNHR 51 (504)
Q Consensus 25 ~p~l~LA~~L~~~Gh~Vt~~~~~~~~~ 51 (504)
--+.+|+++|...| +|+++.|...+.
T Consensus 14 pGi~aL~~al~~~g-~V~VvAP~~eqS 39 (266)
T PRK13934 14 PGLRLLYEFVSPLG-EVDVVAPETPKS 39 (266)
T ss_pred HHHHHHHHHHHhCC-cEEEEccCCCCc
Confidence 34778999998888 799999877654
No 298
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=42.35 E-value=43 Score=27.94 Aligned_cols=35 Identities=23% Similarity=0.251 Sum_probs=26.9
Q ss_pred ccHHHHHHHHHHHHhCCCeEEEEeCccchHHHHhh
Q 010684 22 SHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKA 56 (504)
Q Consensus 22 GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~ 56 (504)
-.+--.+=++..|+++||+|++++++.-...++-+
T Consensus 11 vq~p~alYl~~~Lk~~G~~v~Va~npAA~kLl~va 45 (139)
T PF09001_consen 11 VQTPSALYLSYKLKKKGFEVVVAGNPAALKLLEVA 45 (139)
T ss_dssp THHHHHHHHHHHHHCTTEEEEEEE-HHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhcCCeEEEecCHHHHhHhhhc
Confidence 34445677899999999999999998877766655
No 299
>PRK12342 hypothetical protein; Provisional
Probab=42.03 E-value=44 Score=31.42 Aligned_cols=30 Identities=10% Similarity=0.111 Sum_probs=24.4
Q ss_pred CeeEEEEcCCcc------hHHHHHHHcCCCeEEEcc
Q 010684 123 AVSCIISDGFLP------FTITAAQQLGLPIVLFFT 152 (504)
Q Consensus 123 ~~DlvI~D~~~~------~~~~~A~~lgiP~v~~~~ 152 (504)
+||+|++..... -+..+|+.||+|++....
T Consensus 109 ~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~ 144 (254)
T PRK12342 109 GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVS 144 (254)
T ss_pred CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEE
Confidence 789999765443 489999999999998654
No 300
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=42.03 E-value=97 Score=30.74 Aligned_cols=96 Identities=11% Similarity=0.161 Sum_probs=53.6
Q ss_pred eeEEEecCCccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCch-HHHH-hhcc-Cc----EE----------E
Q 010684 306 SVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPA-EFEV-KAKE-KG----FV----------A 368 (504)
Q Consensus 306 ~~V~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~-~~~~-nv----~~----------~ 368 (504)
.+++.+.||-....+. .++++.+++.++.++|+......+. +.++. ++.- .++. .+ .+ .
T Consensus 3 ~i~~~~GGTGGHi~Pa--la~a~~l~~~g~~v~~vg~~~~~e~--~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 78 (352)
T PRK12446 3 KIVFTGGGSAGHVTPN--LAIIPYLKEDNWDISYIGSHQGIEK--TIIEKENIPYYSISSGKLRRYFDLKNIKDPFLVMK 78 (352)
T ss_pred eEEEEcCCcHHHHHHH--HHHHHHHHhCCCEEEEEECCCcccc--ccCcccCCcEEEEeccCcCCCchHHHHHHHHHHHH
Confidence 4788888887644442 3456667777899999875443221 11111 1100 0000 00 00 0
Q ss_pred eecchHhhhc--CCCcceEEecCCchh---HHHhhhcCCcEEec
Q 010684 369 SWCPQEEVLK--HPSIGGFLTHCGWNS---IVESLCSGVPMICW 407 (504)
Q Consensus 369 ~~vpq~~lL~--~~~~~~~I~HGG~gs---~~eal~~GvP~v~~ 407 (504)
.+.--..+++ +|++ +|++||.=| +..|...|+|+++.
T Consensus 79 ~~~~~~~i~~~~kPdv--vi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 79 GVMDAYVRIRKLKPDV--IFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred HHHHHHHHHHhcCCCE--EEecCchhhHHHHHHHHHcCCCEEEE
Confidence 0001112444 4677 999999986 89999999999873
No 301
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=41.88 E-value=1.4e+02 Score=32.00 Aligned_cols=26 Identities=12% Similarity=0.479 Sum_probs=21.8
Q ss_pred ceEEecCCch------hHHHhhhcCCcEEecC
Q 010684 383 GGFLTHCGWN------SIVESLCSGVPMICWP 408 (504)
Q Consensus 383 ~~~I~HGG~g------s~~eal~~GvP~v~~P 408 (504)
+++++|.|-| .+.+|...++|+|++-
T Consensus 80 gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 80 GVVIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred eEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 3489998866 5789999999999984
No 302
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=41.74 E-value=80 Score=26.34 Aligned_cols=39 Identities=10% Similarity=0.061 Sum_probs=35.1
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCc
Q 010684 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (504)
Q Consensus 9 ~~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~ 47 (504)
++.||++.+.+..+|-.----++..|...|++|......
T Consensus 1 ~~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~ 39 (132)
T TIGR00640 1 RRPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLF 39 (132)
T ss_pred CCCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCC
Confidence 477999999999999999999999999999999987754
No 303
>PRK11823 DNA repair protein RadA; Provisional
Probab=41.55 E-value=76 Score=32.70 Aligned_cols=43 Identities=16% Similarity=0.138 Sum_probs=34.6
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHH
Q 010684 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLL 54 (504)
Q Consensus 12 ~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~ 54 (504)
-+++.--|+.|-..-++.++..+.++|++|.|++.+...+++.
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~ 124 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIK 124 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHH
Confidence 4455555677999999999999998999999999877666554
No 304
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=41.40 E-value=2.6e+02 Score=25.18 Aligned_cols=39 Identities=13% Similarity=0.234 Sum_probs=32.5
Q ss_pred cEEEEEcCCCc-ccHHHHHHHHHHHHhCCCeEEEEeCccc
Q 010684 11 VHAVCIPSPFQ-SHIKAMLKLAKLLHHKGFHITFVNTEFN 49 (504)
Q Consensus 11 ~~il~~~~~~~-GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~ 49 (504)
.++-|++.|.. |-..-++.-++....+|-.|.++++.-.
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD 43 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAID 43 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecccc
Confidence 46667777755 9999999999999999999999998543
No 305
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=40.74 E-value=2.6e+02 Score=24.77 Aligned_cols=137 Identities=11% Similarity=0.049 Sum_probs=68.2
Q ss_pred eeEEEecCCccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHhhccC-cEEEeec-------chHhhh
Q 010684 306 SVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEK-GFVASWC-------PQEEVL 377 (504)
Q Consensus 306 ~~V~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~n-v~~~~~v-------pq~~lL 377 (504)
.+++.-.||+... ....+++.+.+.+..+-.+..... .+.+.....+.+.++ ++...|. .|..+.
T Consensus 3 ~Ill~vtGsiaa~---~~~~li~~L~~~g~~V~vv~T~~A----~~fi~~~~l~~l~~~~v~~~~~~~~~~~~~~hi~l~ 75 (182)
T PRK07313 3 NILLAVSGSIAAY---KAADLTSQLTKRGYQVTVLMTKAA----TKFITPLTLQVLSKNPVHLDVMDEHDPKLMNHIELA 75 (182)
T ss_pred EEEEEEeChHHHH---HHHHHHHHHHHCCCEEEEEEChhH----HHHcCHHHHHHHhCCceEeccccccccCCccccccc
Confidence 3555555665422 234455556666766544443221 112222112233332 3332232 223334
Q ss_pred cCCCcceEEecCCchhHHHh-------------hhc--CCcEEecCCC----CCc---chhhhhhhhhcceeEEecCC--
Q 010684 378 KHPSIGGFLTHCGWNSIVES-------------LCS--GVPMICWPFT----GDQ---PTNGRYVCNEWGVGMEINGD-- 433 (504)
Q Consensus 378 ~~~~~~~~I~HGG~gs~~ea-------------l~~--GvP~v~~P~~----~DQ---~~na~rv~~~~G~G~~l~~~-- 433 (504)
..+|+ .+|.=+-.||+.-. +.. ++|++++|-. ... -.|-.++ +++|+-+.-...
T Consensus 76 ~~aD~-~vIaPaTantlakiA~GiaDnllt~~~~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L-~~~G~~vi~p~~g~ 153 (182)
T PRK07313 76 KRADL-FLVAPATANTIAKLAHGIADDLVTSVALALPATTPKLIAPAMNTKMYENPATQRNLKTL-KEDGVQEIEPKEGL 153 (182)
T ss_pred cccCE-EEEeeCCHhHHHHHHccccCcHHHHHHHHcCCCCCEEEEECCCHHHhcCHHHHHHHHHH-HHCCCEEECCCCCc
Confidence 44554 46666666644322 344 8999999963 233 3466777 566765443320
Q ss_pred --------CCCccHHHHHHHHHHHhc
Q 010684 434 --------DEDVIRNEVEKLVREMME 451 (504)
Q Consensus 434 --------~~~~~~~~l~~ai~~vl~ 451 (504)
-+-.+.++|.+.+.+.+.
T Consensus 154 la~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 154 LACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred cccCCccCCCCCCHHHHHHHHHHHhc
Confidence 024567888888877664
No 306
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=40.59 E-value=2.6e+02 Score=27.34 Aligned_cols=41 Identities=10% Similarity=0.038 Sum_probs=33.3
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccch
Q 010684 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNH 50 (504)
Q Consensus 10 ~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~ 50 (504)
+..|+++-.++-|-..-...||..|+.+|++|.+++.+.++
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 34555555557799999999999999999999999987654
No 307
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=40.47 E-value=81 Score=31.61 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=33.2
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHH
Q 010684 13 AVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLL 54 (504)
Q Consensus 13 il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~ 54 (504)
+++.--|+.|--.-++.+|..+.+.|..|.|++.+...+++.
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~ 126 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIK 126 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHH
Confidence 444555577999999999999999999999998876555543
No 308
>PRK00784 cobyric acid synthase; Provisional
Probab=40.41 E-value=3.9e+02 Score=27.94 Aligned_cols=34 Identities=9% Similarity=0.230 Sum_probs=26.8
Q ss_pred EEEEcCCC-cccHHHHHHHHHHHHhCCCeEEEEeC
Q 010684 13 AVCIPSPF-QSHIKAMLKLAKLLHHKGFHITFVNT 46 (504)
Q Consensus 13 il~~~~~~-~GHi~p~l~LA~~L~~~Gh~Vt~~~~ 46 (504)
|++....+ -|-..-...|++.|+++|++|..+=+
T Consensus 5 ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 5 LMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 44443433 49999999999999999999997654
No 309
>PLN02929 NADH kinase
Probab=40.35 E-value=58 Score=31.48 Aligned_cols=67 Identities=7% Similarity=0.160 Sum_probs=43.4
Q ss_pred cCCCcceEEecCCchhHHHhhh---cCCcEEecCCCCC------cchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHH
Q 010684 378 KHPSIGGFLTHCGWNSIVESLC---SGVPMICWPFTGD------QPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVRE 448 (504)
Q Consensus 378 ~~~~~~~~I~HGG~gs~~eal~---~GvP~v~~P~~~D------Q~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~ 448 (504)
..+++ +|+-||-||+..+.+ .++|++.+=.... ++.+.-.. ..-+|.- -.++.+++.++|.+
T Consensus 63 ~~~Dl--vi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~~--~r~lGfL-----~~~~~~~~~~~L~~ 133 (301)
T PLN02929 63 RDVDL--VVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFDA--RRSTGHL-----CAATAEDFEQVLDD 133 (301)
T ss_pred CCCCE--EEEECCcHHHHHHHHHcCCCCcEEEEECCCccccccccccccccc--ccCcccc-----ccCCHHHHHHHHHH
Confidence 34566 999999999999855 4688888765321 12222111 1123432 24568999999999
Q ss_pred HhcCc
Q 010684 449 MMEGE 453 (504)
Q Consensus 449 vl~~~ 453 (504)
++++.
T Consensus 134 il~g~ 138 (301)
T PLN02929 134 VLFGR 138 (301)
T ss_pred HHcCC
Confidence 99765
No 310
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=40.34 E-value=44 Score=32.13 Aligned_cols=31 Identities=13% Similarity=0.143 Sum_probs=25.1
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 010684 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNT 46 (504)
Q Consensus 11 ~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~ 46 (504)
|||+++=.|+.| ..+|..|.+.||+|+++..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 578888776666 5678889999999999986
No 311
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=40.17 E-value=2.2e+02 Score=30.04 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=22.5
Q ss_pred CeeEEEEcCCcchHHHHHHHcCCCeEEEc
Q 010684 123 AVSCIISDGFLPFTITAAQQLGLPIVLFF 151 (504)
Q Consensus 123 ~~DlvI~D~~~~~~~~~A~~lgiP~v~~~ 151 (504)
++|++|.++ .+..+|+++|||.+.+.
T Consensus 437 ~~DlliG~s---~~k~~a~~~giPlir~g 462 (515)
T TIGR01286 437 PVDFLIGNS---YGKYIQRDTLVPLIRIG 462 (515)
T ss_pred CCCEEEECc---hHHHHHHHcCCCEEEec
Confidence 899999987 46788999999998864
No 312
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.00 E-value=64 Score=31.11 Aligned_cols=58 Identities=17% Similarity=0.411 Sum_probs=41.1
Q ss_pred hhhcCCCcceEEecCCchhHHHhhh----cCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHh
Q 010684 375 EVLKHPSIGGFLTHCGWNSIVESLC----SGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMM 450 (504)
Q Consensus 375 ~lL~~~~~~~~I~HGG~gs~~eal~----~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl 450 (504)
.+...+++ +|+=||-||+..+++ .++|++.+-.. + +|. + ..++++++.+++.+++
T Consensus 60 ~~~~~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G------------~--lGF-L----t~~~~~~~~~~l~~i~ 118 (292)
T PRK01911 60 ELDGSADM--VISIGGDGTFLRTATYVGNSNIPILGINTG------------R--LGF-L----ATVSKEEIEETIDELL 118 (292)
T ss_pred hcccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEecC------------C--CCc-c----cccCHHHHHHHHHHHH
Confidence 34445677 999999999999987 36787766441 1 221 1 2466788999999998
Q ss_pred cCc
Q 010684 451 EGE 453 (504)
Q Consensus 451 ~~~ 453 (504)
++.
T Consensus 119 ~g~ 121 (292)
T PRK01911 119 NGD 121 (292)
T ss_pred cCC
Confidence 765
No 313
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=39.96 E-value=1.9e+02 Score=28.47 Aligned_cols=97 Identities=12% Similarity=0.159 Sum_probs=59.9
Q ss_pred CeeEEEecCCcc---ccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHhhc-cC-cEEEee--cchH-hh
Q 010684 305 KSVIYVNFGSFI---FMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAK-EK-GFVASW--CPQE-EV 376 (504)
Q Consensus 305 ~~~V~vs~GS~~---~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~n-v~~~~~--vpq~-~l 376 (504)
++.|.+..|+.. ..+.+.+.++++.+.+.+.++++..+.+..+ ........+... .+ +-+.+. +.+. .+
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e~e---~~~~~~i~~~~~~~~~~~l~g~~sL~el~al 259 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDKDD---LACVNEIAQGCQTPPVTALAGKTTFPELGAL 259 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCChHH---HHHHHHHHHhcCCCccccccCCCCHHHHHHH
Confidence 467888888753 5677888899988877787776654432100 000011111111 12 223343 3343 59
Q ss_pred hcCCCcceEEecCCchhHHHhhhcCCcEEec
Q 010684 377 LKHPSIGGFLTHCGWNSIVESLCSGVPMICW 407 (504)
Q Consensus 377 L~~~~~~~~I~HGG~gs~~eal~~GvP~v~~ 407 (504)
+.++++ ||+. -.|-++=|...|+|+|++
T Consensus 260 i~~a~l--~v~n-DSGp~HlAaA~g~P~v~l 287 (352)
T PRK10422 260 IDHAQL--FIGV-DSAPAHIAAAVNTPLICL 287 (352)
T ss_pred HHhCCE--EEec-CCHHHHHHHHcCCCEEEE
Confidence 999998 8875 458899999999999876
No 314
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=39.94 E-value=48 Score=30.14 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=26.8
Q ss_pred CCCCCCCCCCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 010684 1 MESKPKACSKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNT 46 (504)
Q Consensus 1 ~~~~~~~~~~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~ 46 (504)
||+++++ ++++++..+.|-+- -+||+++++.|+.|. +|.
T Consensus 1 ~e~~~~~----k~VlItgcs~GGIG--~ala~ef~~~G~~V~-Ata 39 (289)
T KOG1209|consen 1 SELQSQP----KKVLITGCSSGGIG--YALAKEFARNGYLVY-ATA 39 (289)
T ss_pred CCcccCC----CeEEEeecCCcchh--HHHHHHHHhCCeEEE-EEc
Confidence 5666654 55566666665542 478999999999997 444
No 315
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=39.58 E-value=2.4e+02 Score=25.22 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=24.4
Q ss_pred CeeEEEEcCCcc--hHHHHHHHcCCCeEEEccccH
Q 010684 123 AVSCIISDGFLP--FTITAAQQLGLPIVLFFTISA 155 (504)
Q Consensus 123 ~~DlvI~D~~~~--~~~~~A~~lgiP~v~~~~~~~ 155 (504)
.||+||.-...- .++.=|.++|||+|.+.-+..
T Consensus 127 ~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn~ 161 (193)
T cd01425 127 LPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTNC 161 (193)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEecCCC
Confidence 789988544322 567779999999999876653
No 316
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=39.53 E-value=2.2e+02 Score=26.75 Aligned_cols=38 Identities=13% Similarity=-0.000 Sum_probs=31.1
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCcc
Q 010684 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (504)
Q Consensus 11 ~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~ 48 (504)
.-+++.-.|+.|-..-.+.++...+++|..|.|++.+.
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVES 74 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 34555555688999999999999888999999999764
No 317
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=39.48 E-value=78 Score=27.37 Aligned_cols=99 Identities=13% Similarity=0.087 Sum_probs=55.0
Q ss_pred chhhhccccCCCCCeeEEEecCCccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHhhccCcEEEee-
Q 010684 292 ETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASW- 370 (504)
Q Consensus 292 ~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~- 370 (504)
-.+|-++|.... ...++.| .........++..+.+-+++-++..... .... ..+.....++
T Consensus 20 A~~lg~~La~~g---~~lv~Gg-----~~GlM~a~a~ga~~~gg~viGVlp~~l~------~~~~----~~~~~i~~~~~ 81 (159)
T TIGR00725 20 AYRLGKELAKKG---HILINGG-----RTGVMEAVSKGAREAGGLVVGILPDEDF------AGNP----YLTIKVKTGMN 81 (159)
T ss_pred HHHHHHHHHHCC---CEEEcCC-----chhHHHHHHHHHHHCCCeEEEECChhhc------cCCC----CceEEEECCCc
Confidence 455667776542 5555533 2245566777777777777766543210 0000 0111122333
Q ss_pred cchHhhh-cCCCcceEEecCCchhHHH---hhhcCCcEEecCC
Q 010684 371 CPQEEVL-KHPSIGGFLTHCGWNSIVE---SLCSGVPMICWPF 409 (504)
Q Consensus 371 vpq~~lL-~~~~~~~~I~HGG~gs~~e---al~~GvP~v~~P~ 409 (504)
.+-..++ ..+++ .++--||.||..| ++.+++|+++++.
T Consensus 82 ~~Rk~~m~~~sda-~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 82 FARNFILVRSADV-VVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred chHHHHHHHHCCE-EEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 3334444 44554 4566788998765 5889999999985
No 318
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=39.41 E-value=2.1e+02 Score=30.40 Aligned_cols=27 Identities=22% Similarity=0.490 Sum_probs=22.3
Q ss_pred cceEEecCCch------hHHHhhhcCCcEEecC
Q 010684 382 IGGFLTHCGWN------SIVESLCSGVPMICWP 408 (504)
Q Consensus 382 ~~~~I~HGG~g------s~~eal~~GvP~v~~P 408 (504)
.+++++|.|-| .+++|...++|+|++-
T Consensus 65 ~gv~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~ 97 (558)
T TIGR00118 65 VGVVLVTSGPGATNLVTGIATAYMDSIPMVVFT 97 (558)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 33489988854 7899999999999994
No 319
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=39.36 E-value=43 Score=29.67 Aligned_cols=42 Identities=14% Similarity=0.287 Sum_probs=32.3
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHH
Q 010684 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLL 54 (504)
Q Consensus 12 ~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~ 54 (504)
||++.-.|+-|-+.- ..+.+.|+++|++|.++.++.-...+.
T Consensus 1 ~illgvtGsiaa~ka-~~lir~L~~~g~~V~vv~T~~A~~fv~ 42 (181)
T TIGR00421 1 RIVVAMTGASGVIYG-IRLLEVLKEAGVEVHLVISDWAKETIK 42 (181)
T ss_pred CEEEEEECHHHHHHH-HHHHHHHHHCCCEEEEEECccHHHHHH
Confidence 466666667676665 889999999999999999877665553
No 320
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.31 E-value=62 Score=31.41 Aligned_cols=57 Identities=14% Similarity=0.251 Sum_probs=41.1
Q ss_pred hhcCCCcceEEecCCchhHHHhhhc----CCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhc
Q 010684 376 VLKHPSIGGFLTHCGWNSIVESLCS----GVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMME 451 (504)
Q Consensus 376 lL~~~~~~~~I~HGG~gs~~eal~~----GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~ 451 (504)
+...+++ +|+=||-||+..+++. ++|++.+.. -+ +|.-. .+.++++.+++.+++.
T Consensus 69 ~~~~~D~--vi~lGGDGT~L~aar~~~~~~~PilGIN~------------G~--lGFL~-----~~~~~~~~~~l~~i~~ 127 (306)
T PRK03372 69 AADGCEL--VLVLGGDGTILRAAELARAADVPVLGVNL------------GH--VGFLA-----EAEAEDLDEAVERVVD 127 (306)
T ss_pred cccCCCE--EEEEcCCHHHHHHHHHhccCCCcEEEEec------------CC--Cceec-----cCCHHHHHHHHHHHHc
Confidence 3345677 9999999999999764 788887765 11 23222 3567889999999987
Q ss_pred Cc
Q 010684 452 GE 453 (504)
Q Consensus 452 ~~ 453 (504)
+.
T Consensus 128 g~ 129 (306)
T PRK03372 128 RD 129 (306)
T ss_pred CC
Confidence 65
No 321
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=39.29 E-value=60 Score=33.69 Aligned_cols=55 Identities=9% Similarity=0.222 Sum_probs=39.2
Q ss_pred cCCCcceEEecCCchhHHHhhhc----CCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCc
Q 010684 378 KHPSIGGFLTHCGWNSIVESLCS----GVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE 453 (504)
Q Consensus 378 ~~~~~~~~I~HGG~gs~~eal~~----GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~ 453 (504)
..+++ +|+=||-||++.+.+. ++|++.+- . -. +|. +- .++.+++.++|.++++++
T Consensus 261 ~~~Dl--VIsiGGDGTlL~Aar~~~~~~iPILGIN--------~----G~--LGF-Lt----~i~~~e~~~~Le~il~G~ 319 (508)
T PLN02935 261 TKVDL--VITLGGDGTVLWAASMFKGPVPPVVPFS--------M----GS--LGF-MT----PFHSEQYRDCLDAILKGP 319 (508)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEe--------C----CC--cce-ec----ccCHHHHHHHHHHHHcCC
Confidence 45677 9999999999999774 45766542 1 11 333 22 467899999999999765
No 322
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=39.06 E-value=87 Score=30.47 Aligned_cols=29 Identities=10% Similarity=0.108 Sum_probs=24.0
Q ss_pred CeeEEEEcCCcchHHHHHHHcCCCeEEEccc
Q 010684 123 AVSCIISDGFLPFTITAAQQLGLPIVLFFTI 153 (504)
Q Consensus 123 ~~DlvI~D~~~~~~~~~A~~lgiP~v~~~~~ 153 (504)
+.|++|+.. .+.+.+|..+|+|.|.++..
T Consensus 253 ~a~l~I~nD--SGp~HlA~A~g~p~valfGp 281 (322)
T PRK10964 253 GAKAVVSVD--TGLSHLTAALDRPNITLYGP 281 (322)
T ss_pred hCCEEEecC--CcHHHHHHHhCCCEEEEECC
Confidence 559999874 47899999999999998753
No 323
>PRK06849 hypothetical protein; Provisional
Probab=38.81 E-value=60 Score=32.68 Aligned_cols=35 Identities=23% Similarity=0.342 Sum_probs=27.2
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCcc
Q 010684 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (504)
Q Consensus 10 ~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~ 48 (504)
+++|++.-.. ..-.+.+|+.|.++||+|+++....
T Consensus 4 ~~~VLI~G~~----~~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 4 KKTVLITGAR----APAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCEEEEeCCC----cHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 6788877432 2258899999999999999987654
No 324
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=38.67 E-value=59 Score=32.73 Aligned_cols=104 Identities=13% Similarity=0.145 Sum_probs=67.8
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCCCCcccH
Q 010684 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTAQDA 90 (504)
Q Consensus 11 ~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 90 (504)
.=|++-=-|+-|--.=++.++..|+.+| .|.+++.+....+++-.. ..+.... ..
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA-------------~RL~~~~-~~---------- 148 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRA-------------DRLGLPT-NN---------- 148 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHH-------------HHhCCCc-cc----------
Confidence 3456666678899999999999999999 999999988777664321 1111000 00
Q ss_pred HHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc-h--------------------HHHHHHHcCCCeEE
Q 010684 91 YSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLP-F--------------------TITAAQQLGLPIVL 149 (504)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~-~--------------------~~~~A~~lgiP~v~ 149 (504)
+..+ . ...++++++.+... +||++|.|+... + ...+|+..||+.+.
T Consensus 149 ---l~l~-a---Et~~e~I~~~l~~~------~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fi 215 (456)
T COG1066 149 ---LYLL-A---ETNLEDIIAELEQE------KPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFI 215 (456)
T ss_pred ---eEEe-h---hcCHHHHHHHHHhc------CCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 0001 1 23455666666655 999999998632 1 23457888999888
Q ss_pred Ecc
Q 010684 150 FFT 152 (504)
Q Consensus 150 ~~~ 152 (504)
+..
T Consensus 216 VGH 218 (456)
T COG1066 216 VGH 218 (456)
T ss_pred EEE
Confidence 654
No 325
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=38.58 E-value=58 Score=27.48 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=22.4
Q ss_pred HHHHHHHHhCCCeEEEEeCccchHHHHhh
Q 010684 28 LKLAKLLHHKGFHITFVNTEFNHRRLLKA 56 (504)
Q Consensus 28 l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~ 56 (504)
.-+|..|++.||+|++++.....+.+.+.
T Consensus 11 ~~~a~~L~~~g~~V~l~~r~~~~~~~~~~ 39 (151)
T PF02558_consen 11 SLYAARLAQAGHDVTLVSRSPRLEAIKEQ 39 (151)
T ss_dssp HHHHHHHHHTTCEEEEEESHHHHHHHHHH
T ss_pred HHHHHHHHHCCCceEEEEccccHHhhhhe
Confidence 34788999999999999987744555555
No 326
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=38.57 E-value=78 Score=27.47 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=21.6
Q ss_pred eEEecCCch------hHHHhhhcCCcEEecCC
Q 010684 384 GFLTHCGWN------SIVESLCSGVPMICWPF 409 (504)
Q Consensus 384 ~~I~HGG~g------s~~eal~~GvP~v~~P~ 409 (504)
++++|+|-| .+.||...++|||++.-
T Consensus 63 v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 94 (162)
T cd07037 63 AVVCTSGTAVANLLPAVVEAYYSGVPLLVLTA 94 (162)
T ss_pred EEEECCchHHHHHhHHHHHHHhcCCCEEEEEC
Confidence 388898855 67899999999999953
No 327
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=38.55 E-value=1.7e+02 Score=31.30 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=21.6
Q ss_pred ceEEecCCch------hHHHhhhcCCcEEecC
Q 010684 383 GGFLTHCGWN------SIVESLCSGVPMICWP 408 (504)
Q Consensus 383 ~~~I~HGG~g------s~~eal~~GvP~v~~P 408 (504)
+++++|.|-| .+++|.+.++|+|++-
T Consensus 65 gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 65 GVCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred EEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 3488888744 7899999999999984
No 328
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=38.54 E-value=1.9e+02 Score=30.09 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=20.8
Q ss_pred CeeEEEEcCCcchHHHHHHHcCCCeEE
Q 010684 123 AVSCIISDGFLPFTITAAQQLGLPIVL 149 (504)
Q Consensus 123 ~~DlvI~D~~~~~~~~~A~~lgiP~v~ 149 (504)
+||++|.+. ....+|+++|||++-
T Consensus 393 ~pDliig~s---~~~~~a~k~giP~~~ 416 (475)
T PRK14478 393 KADIMLSGG---RSQFIALKAGMPWLD 416 (475)
T ss_pred CCCEEEecC---chhhhhhhcCCCEEE
Confidence 899999973 567899999999984
No 329
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=38.51 E-value=1e+02 Score=29.93 Aligned_cols=98 Identities=17% Similarity=0.250 Sum_probs=57.3
Q ss_pred CcEEEEEcCCCc--ccH--HHHHHHHHHHHhCCCeEEEE-eCccchHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCC
Q 010684 10 KVHAVCIPSPFQ--SHI--KAMLKLAKLLHHKGFHITFV-NTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDES 84 (504)
Q Consensus 10 ~~~il~~~~~~~--GHi--~p~l~LA~~L~~~Gh~Vt~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~ 84 (504)
+..|++.|..+. -.+ .-+.+|++.|.++|.++.+. +++...+..++.. . .++. .
T Consensus 179 ~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~~i~---------~----~~~~----~---- 237 (319)
T TIGR02193 179 APYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEKQRAERIA---------E----ALPG----A---- 237 (319)
T ss_pred CCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHH---------h----hCCC----C----
Confidence 456777776543 122 24788999998889998876 4333333332220 0 0000 0
Q ss_pred CCcccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEcc
Q 010684 85 PTAQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFT 152 (504)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~lgiP~v~~~~ 152 (504)
+ +.. ...+.++..-+. +.|++|+.. .+.+.+|..+|+|++.++.
T Consensus 238 ----~-------l~g---~~sL~el~ali~--------~a~l~I~~D--Sgp~HlAaa~g~P~i~lfg 281 (319)
T TIGR02193 238 ----V-------VLP---KMSLAEVAALLA--------GADAVVGVD--TGLTHLAAALDKPTVTLYG 281 (319)
T ss_pred ----e-------ecC---CCCHHHHHHHHH--------cCCEEEeCC--ChHHHHHHHcCCCEEEEEC
Confidence 0 001 123444444443 559999774 4788999999999998864
No 330
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=38.42 E-value=1.2e+02 Score=31.42 Aligned_cols=43 Identities=14% Similarity=0.137 Sum_probs=34.3
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHH
Q 010684 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLL 54 (504)
Q Consensus 12 ~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~ 54 (504)
-+++.--|+.|-..-++.++..+.++|++|.|++.+...+++.
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~ 138 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIK 138 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHH
Confidence 3455555677999999999999999999999999877665554
No 331
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=38.40 E-value=1.1e+02 Score=26.52 Aligned_cols=29 Identities=10% Similarity=0.346 Sum_probs=21.8
Q ss_pred CCCcceEEecCCc------hhHHHhhhcCCcEEecCC
Q 010684 379 HPSIGGFLTHCGW------NSIVESLCSGVPMICWPF 409 (504)
Q Consensus 379 ~~~~~~~I~HGG~------gs~~eal~~GvP~v~~P~ 409 (504)
++.+ +++|.|- +++.+|...++|+|++.-
T Consensus 64 ~~~v--~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g 98 (172)
T PF02776_consen 64 RPGV--VIVTSGPGATNALTGLANAYADRIPVLVITG 98 (172)
T ss_dssp SEEE--EEEETTHHHHTTHHHHHHHHHTT-EEEEEEE
T ss_pred cceE--EEeecccchHHHHHHHhhcccceeeEEEEec
Confidence 3444 8888874 478889999999999874
No 332
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=38.31 E-value=2.9e+02 Score=24.56 Aligned_cols=118 Identities=12% Similarity=0.106 Sum_probs=69.4
Q ss_pred ccHHHHHHHHHHHHhC-CCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCCC----------CCCCCCC-C--CCCc
Q 010684 22 SHIKAMLKLAKLLHHK-GFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPD----------GLPASSD-E--SPTA 87 (504)
Q Consensus 22 GHi~p~l~LA~~L~~~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~----------~~~~~~~-~--~~~~ 87 (504)
-.+.-+-.+++.+.++ |.++.+.++...++.++.+ .+-+..+.. ..|.... . ....
T Consensus 39 ~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gA----------DfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT 108 (183)
T PF02056_consen 39 ERLEIVERLARRMVEEAGADLKVEATTDRREALEGA----------DFVINQIRVGGLEAREIDEEIPLKYGIVGTIQET 108 (183)
T ss_dssp HHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTE----------SEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSS
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCC----------CEEEEEeeecchHHHHHHHHHHHHhCCccccccc
Confidence 3455667788888664 8888887776666666544 343333321 1111100 0 1234
Q ss_pred ccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcch---HHHHHHHcC-CCeEEEccccHHHH
Q 010684 88 QDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPF---TITAAQQLG-LPIVLFFTISACSF 158 (504)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~---~~~~A~~lg-iP~v~~~~~~~~~~ 158 (504)
-...-++.+++. .+.+.++.+.+++- .||.-|.+...+. +..+.+.++ ++++.++..+....
T Consensus 109 ~G~GG~~~alRt---ipv~~~ia~~i~~~------~PdAw~iNytNP~~~vt~a~~r~~~~~k~vGlCh~~~~~~ 174 (183)
T PF02056_consen 109 VGPGGFFRALRT---IPVMLDIARDIEEL------CPDAWLINYTNPMGIVTEALSRYTPKIKVVGLCHGPQGTR 174 (183)
T ss_dssp STHHHHHHHHHH---HHHHHHHHHHHHHH------TTTSEEEE-SSSHHHHHHHHHHHSTTSEEEEE-SHHHHHH
T ss_pred cCccHHHHHHhh---HHHHHHHHHHHHHh------CCCcEEEeccChHHHHHHHHHHhCCCCCEEEECCCHHHHH
Confidence 455667776644 46777787777776 7888888866653 334455666 99999998775543
No 333
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=38.23 E-value=58 Score=31.36 Aligned_cols=38 Identities=5% Similarity=0.003 Sum_probs=33.8
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCcc
Q 010684 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (504)
Q Consensus 11 ~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~ 48 (504)
|||++.-=|+-|-..-.+.||..|+++|++|.++-..+
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~Dp 38 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDP 38 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccC
Confidence 67888888999999999999999999999999886543
No 334
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=38.14 E-value=78 Score=25.53 Aligned_cols=41 Identities=12% Similarity=0.089 Sum_probs=33.7
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHH
Q 010684 13 AVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRL 53 (504)
Q Consensus 13 il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~ 53 (504)
++..+.++..|-.....++..|.++|++|.+.......+.+
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~ 42 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEI 42 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHH
Confidence 57778888899999999999999999999998765443333
No 335
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=37.84 E-value=1.7e+02 Score=28.94 Aligned_cols=104 Identities=14% Similarity=0.163 Sum_probs=71.1
Q ss_pred cCcEEEeecchHhh-hcCCCcceEEecC---Cch-hHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCc
Q 010684 363 EKGFVASWCPQEEV-LKHPSIGGFLTHC---GWN-SIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDV 437 (504)
Q Consensus 363 ~nv~~~~~vpq~~l-L~~~~~~~~I~HG---G~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~ 437 (504)
.+..+.+-.+--+. -.|.|+ ||+|= |.| .-.|+|+.|-|.| -|+..+ . ++|...+ ..
T Consensus 253 gkasfegR~~~p~fla~~tD~--VvSHqWeN~lNYlY~daLyggYPLV---------HNS~~l-~--d~GYYY~----~f 314 (364)
T PF10933_consen 253 GKASFEGRFDFPDFLAQHTDA--VVSHQWENPLNYLYYDALYGGYPLV---------HNSPLL-K--DVGYYYP----DF 314 (364)
T ss_pred CeeEEeeecChHHHHHhCCCE--EEeccccchhhHHHHHHHhcCCCcc---------cCcchh-c--ccCcCCC----Cc
Confidence 34455555565554 447888 99995 333 5689999999996 688888 4 4887776 46
Q ss_pred cHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 010684 438 IRNEVEKLVREMMEG--EKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEI 490 (504)
Q Consensus 438 ~~~~l~~ai~~vl~~--~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 490 (504)
+..+=++++.+++.+ .+-+.|+++++++=..+.- ....+++...++|
T Consensus 315 D~~~G~r~L~~A~~~HD~~~~~Y~~ra~~~l~~~~p------~n~~nv~~y~~~L 363 (364)
T PF10933_consen 315 DAFEGARQLLRAIREHDADLDAYRARARRLLDRLSP------ENPANVRAYEARL 363 (364)
T ss_pred cHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhhCC------CCHHHHHHHHHhh
Confidence 666666777666653 3337899999998887753 3356666665544
No 336
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=37.73 E-value=49 Score=28.68 Aligned_cols=42 Identities=17% Similarity=0.044 Sum_probs=30.1
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCcc--chHHHHhh
Q 010684 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEF--NHRRLLKA 56 (504)
Q Consensus 10 ~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~--~~~~~~~~ 56 (504)
..+|+++=+|++||.+ |.-|++.|++|++..-+. ..+..++.
T Consensus 4 ~k~IAViGyGsQG~a~-----AlNLrDSG~~V~Vglr~~s~s~~~A~~~ 47 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAH-----ALNLRDSGVNVIVGLREGSASWEKAKAD 47 (165)
T ss_dssp TSEEEEES-SHHHHHH-----HHHHHHCC-EEEEEE-TTCHHHHHHHHT
T ss_pred CCEEEEECCChHHHHH-----HHHHHhCCCCEEEEecCCCcCHHHHHHC
Confidence 5699999999999864 778999999999887543 34455544
No 337
>PRK11914 diacylglycerol kinase; Reviewed
Probab=37.64 E-value=1.1e+02 Score=29.54 Aligned_cols=81 Identities=15% Similarity=0.043 Sum_probs=46.5
Q ss_pred eEEEecCCccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHhhccCcEEEeecchHhhhcCCCcceEE
Q 010684 307 VIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFL 386 (504)
Q Consensus 307 ~V~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~I 386 (504)
.+.++--|-.....+....+.+.+++.+..+....... .+-... .+ ........++ +|
T Consensus 12 ~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~----------~~~~~~---------~a-~~~~~~~~d~--vv 69 (306)
T PRK11914 12 TVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTD----------AHDARH---------LV-AAALAKGTDA--LV 69 (306)
T ss_pred EEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCC----------HHHHHH---------HH-HHHHhcCCCE--EE
Confidence 34444443333334556677788888887755433311 110000 00 0111223455 99
Q ss_pred ecCCchhHHHhh----hcCCcEEecCC
Q 010684 387 THCGWNSIVESL----CSGVPMICWPF 409 (504)
Q Consensus 387 ~HGG~gs~~eal----~~GvP~v~~P~ 409 (504)
.-||-||+.|++ ..++|+-++|.
T Consensus 70 v~GGDGTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 70 VVGGDGVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred EECCchHHHHHhHHhccCCCcEEEEeC
Confidence 999999999997 34799999996
No 338
>CHL00175 minD septum-site determining protein; Validated
Probab=37.49 E-value=3.6e+02 Score=25.48 Aligned_cols=38 Identities=11% Similarity=0.257 Sum_probs=29.8
Q ss_pred cEEEEEcC--CCcccHHHHHHHHHHHHhCCCeEEEEeCcc
Q 010684 11 VHAVCIPS--PFQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (504)
Q Consensus 11 ~~il~~~~--~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~ 48 (504)
.+++.+.. |+-|=..-...||..|+++|++|.++-...
T Consensus 15 ~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~ 54 (281)
T CHL00175 15 SRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADI 54 (281)
T ss_pred ceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 35555555 466888999999999999999999886443
No 339
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=37.30 E-value=66 Score=32.67 Aligned_cols=41 Identities=12% Similarity=0.245 Sum_probs=33.2
Q ss_pred CCCcEEEEEcC--CCcccHHHHHHHHHHHHhCCCeEEEEeCcc
Q 010684 8 CSKVHAVCIPS--PFQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (504)
Q Consensus 8 ~~~~~il~~~~--~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~ 48 (504)
..+++|+.+.. |+-|-..-.+.||..|+.+|++|.++=..+
T Consensus 118 ~~~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDp 160 (405)
T PRK13869 118 SEHLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDP 160 (405)
T ss_pred CCCceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCC
Confidence 34667766665 677999999999999999999999985443
No 340
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=37.11 E-value=52 Score=31.97 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=32.4
Q ss_pred cEEEEEcCC-CcccHHHHHHHHHHHHhCCCeEEEEeCccchH
Q 010684 11 VHAVCIPSP-FQSHIKAMLKLAKLLHHKGFHITFVNTEFNHR 51 (504)
Q Consensus 11 ~~il~~~~~-~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~ 51 (504)
||++|+..- +-|-..-..++|-.++++|++|.+++.++.+.
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHS 42 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTH
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCcc
Confidence 466777665 55999999999999999999999999876553
No 341
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=37.01 E-value=75 Score=30.45 Aligned_cols=75 Identities=11% Similarity=0.228 Sum_probs=49.9
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHhhccCcEEEeecchHhhhcCCCcceEEecCCchhHHH
Q 010684 317 FMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVE 396 (504)
Q Consensus 317 ~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~I~HGG~gs~~e 396 (504)
..+.+..+.+.+|+.+...+.||...+.. .-.++.++++...+-++|.. ||=..-..+++-
T Consensus 45 ~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~-----------------ga~rlL~~ld~~~~~~~pK~--~iGySDiTaL~~ 105 (282)
T cd07025 45 GTDEERAADLNAAFADPEIKAIWCARGGY-----------------GANRLLPYLDYDLIRANPKI--FVGYSDITALHL 105 (282)
T ss_pred CCHHHHHHHHHHHhhCCCCCEEEEcCCcC-----------------CHHHhhhhCCHHHHhhCCeE--EEEecHHHHHHH
Confidence 44566688899999999999999998763 12244455555555556655 776666666666
Q ss_pred hhhc--CCcEEecCCC
Q 010684 397 SLCS--GVPMICWPFT 410 (504)
Q Consensus 397 al~~--GvP~v~~P~~ 410 (504)
+++. |++.+--|..
T Consensus 106 ~l~~~~g~~t~hGp~~ 121 (282)
T cd07025 106 ALYAKTGLVTFHGPML 121 (282)
T ss_pred HHHHhcCceEEECccc
Confidence 6643 6666666643
No 342
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=36.99 E-value=62 Score=29.20 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=31.5
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCc
Q 010684 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (504)
Q Consensus 10 ~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~ 47 (504)
++||.+=..|+-|-.+.|+.=|..|+++|.+|.+..-+
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~ve 42 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVE 42 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE--
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence 78999999999999999999999999999999986644
No 343
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=36.73 E-value=1.9e+02 Score=32.80 Aligned_cols=104 Identities=11% Similarity=0.011 Sum_probs=62.8
Q ss_pred ecchH---hhhcCCCcceEEe---cCCch-hHHHhhhcCC---cEEecCCCCCcchhhhhhhhhcc-eeEEecCCCCCcc
Q 010684 370 WCPQE---EVLKHPSIGGFLT---HCGWN-SIVESLCSGV---PMICWPFTGDQPTNGRYVCNEWG-VGMEINGDDEDVI 438 (504)
Q Consensus 370 ~vpq~---~lL~~~~~~~~I~---HGG~g-s~~eal~~Gv---P~v~~P~~~DQ~~na~rv~~~~G-~G~~l~~~~~~~~ 438 (504)
.+|+. .++..+++ ++. .-|.| ...|++.++. -+++++-+ +--. +.+| -|+.++ ..+
T Consensus 447 ~l~~eeL~AlY~~ADV--~lvTslrDGmNLva~Eyva~~~~~~GvLILSEf------aGaa-~~L~~~AllVN----P~D 513 (934)
T PLN03064 447 SLDFHALCALYAVTDV--ALVTSLRDGMNLVSYEFVACQDSKKGVLILSEF------AGAA-QSLGAGAILVN----PWN 513 (934)
T ss_pred CCCHHHHHHHHHhCCE--EEeCccccccCchHHHHHHhhcCCCCCeEEeCC------CchH-HHhCCceEEEC----CCC
Confidence 35655 46667787 554 34777 5569999954 12222322 2122 3444 356666 478
Q ss_pred HHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHhc
Q 010684 439 RNEVEKLVREMME-GEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEILLS 493 (504)
Q Consensus 439 ~~~l~~ai~~vl~-~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 493 (504)
.++++++|.++|+ +++ .-+++.+++.+.+.. -+...=+++|+++|.+.
T Consensus 514 ~~~vA~AI~~AL~M~~~--Er~~r~~~~~~~V~~-----~d~~~Wa~~fl~~L~~~ 562 (934)
T PLN03064 514 ITEVAASIAQALNMPEE--EREKRHRHNFMHVTT-----HTAQEWAETFVSELNDT 562 (934)
T ss_pred HHHHHHHHHHHHhCCHH--HHHHHHHHHHhhccc-----CCHHHHHHHHHHHHHHH
Confidence 8999999999998 441 344555555555553 36667777777777654
No 344
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=36.73 E-value=55 Score=28.89 Aligned_cols=40 Identities=13% Similarity=0.109 Sum_probs=30.6
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHH
Q 010684 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRR 52 (504)
Q Consensus 12 ~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~ 52 (504)
||++.-.|+-|=+ -...+.+.|.++|++|.++.++.-...
T Consensus 2 ~I~lgvtGs~~a~-~~~~ll~~L~~~g~~V~vi~T~~A~~f 41 (177)
T TIGR02113 2 KILLAVTGSIAAY-KAADLTSQLTKLGYDVTVLMTQAATQF 41 (177)
T ss_pred EEEEEEcCHHHHH-HHHHHHHHHHHCCCEEEEEEChHHHhh
Confidence 6777777766554 455999999999999999988654443
No 345
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=36.59 E-value=1.1e+02 Score=27.30 Aligned_cols=63 Identities=8% Similarity=-0.020 Sum_probs=42.5
Q ss_pred ecCCCCCcchhhhhhhhhcceeEEecC----C------CCCccHHHHH----HHHHHHhcCchHHHHHHHHHHHHHHHHH
Q 010684 406 CWPFTGDQPTNGRYVCNEWGVGMEING----D------DEDVIRNEVE----KLVREMMEGEKGKQMRNKAMEWKGLAEE 471 (504)
Q Consensus 406 ~~P~~~DQ~~na~rv~~~~G~G~~l~~----~------~~~~~~~~l~----~ai~~vl~~~~~~~~~~~a~~l~~~~~~ 471 (504)
+.|.+.||......+-|-+.+|++-.. + -..++++.|+ +.|.++|.|+ .+-+|-+|+.+.+.+
T Consensus 22 G~P~~dd~~LFE~L~Le~~QAGLSW~tIL~Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~---~IIRnr~KI~Avi~N 98 (187)
T PRK10353 22 GVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQDA---GIIRHRGKIQAIIGN 98 (187)
T ss_pred CCcCCCcHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCc---hhHHhHHHHHHHHHH
Confidence 456688998888776577788877641 0 0356677776 6788888888 666666666555554
No 346
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=36.48 E-value=1.6e+02 Score=30.78 Aligned_cols=45 Identities=20% Similarity=0.290 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCC--CCCCCC
Q 010684 24 IKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIP--DGLPAS 80 (504)
Q Consensus 24 i~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~--~~~~~~ 80 (504)
=.-++.+|+.|.+.|+++. .| ......+++. |+.+..+. .++|+.
T Consensus 14 K~~iv~lAk~L~~lGfeI~-AT-~GTak~L~e~----------GI~v~~V~k~TgfpEi 60 (513)
T PRK00881 14 KTGIVEFAKALVELGVEIL-ST-GGTAKLLAEA----------GIPVTEVSDVTGFPEI 60 (513)
T ss_pred cccHHHHHHHHHHCCCEEE-Ec-chHHHHHHHC----------CCeeEEeecccCCchh
Confidence 3448899999999999994 44 4556666666 78777775 467776
No 347
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=36.40 E-value=71 Score=28.42 Aligned_cols=44 Identities=11% Similarity=0.053 Sum_probs=34.8
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHh-CCCeEEEEeCccchHHHHh
Q 010684 11 VHAVCIPSPFQSHIKAMLKLAKLLHH-KGFHITFVNTEFNHRRLLK 55 (504)
Q Consensus 11 ~~il~~~~~~~GHi~p~l~LA~~L~~-~Gh~Vt~~~~~~~~~~~~~ 55 (504)
+||++.-.|+-| .+=...+.+.|.+ .||+|.++.++.-...+..
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~~ 46 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLAH 46 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHHH
Confidence 378888888777 5558999999999 5999999998776655543
No 348
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=36.22 E-value=52 Score=28.92 Aligned_cols=30 Identities=10% Similarity=0.303 Sum_probs=20.5
Q ss_pred CCcceEEecCCchhHHHhhhcCCcEEecCCC
Q 010684 380 PSIGGFLTHCGWNSIVESLCSGVPMICWPFT 410 (504)
Q Consensus 380 ~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~ 410 (504)
..+.++|++||......... ++|+|-+|..
T Consensus 33 ~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s 62 (176)
T PF06506_consen 33 EGADVIISRGGTAELLRKHV-SIPVVEIPIS 62 (176)
T ss_dssp TT-SEEEEEHHHHHHHHCC--SS-EEEE---
T ss_pred cCCeEEEECCHHHHHHHHhC-CCCEEEECCC
Confidence 34444999999999998877 9999999974
No 349
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=36.20 E-value=63 Score=28.51 Aligned_cols=45 Identities=13% Similarity=0.154 Sum_probs=34.7
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHH
Q 010684 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLL 54 (504)
Q Consensus 10 ~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~ 54 (504)
+..++|+-.++.|-..=..++|+++.++|+.|.|++.....+.+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~ 91 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK 91 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc
Confidence 568888888899999999999999999999999998766555443
No 350
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=36.13 E-value=29 Score=32.43 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCcc
Q 010684 25 KAMLKLAKLLHHKGFHITFVNTEF 48 (504)
Q Consensus 25 ~p~l~LA~~L~~~Gh~Vt~~~~~~ 48 (504)
.-.-.|+++|+++||+|++++|..
T Consensus 20 dv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 20 DVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred HHHHHHHHHHHhcCCeEEEEEccc
Confidence 346789999999999999999854
No 351
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=35.95 E-value=63 Score=30.49 Aligned_cols=36 Identities=6% Similarity=-0.066 Sum_probs=31.2
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 010684 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNT 46 (504)
Q Consensus 11 ~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~ 46 (504)
|+|+++-=|+-|-..-.+.||..|+++|++|.++=-
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~ 36 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGC 36 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEec
Confidence 578888667789999999999999999999998843
No 352
>PRK14098 glycogen synthase; Provisional
Probab=35.93 E-value=64 Score=33.74 Aligned_cols=38 Identities=11% Similarity=0.300 Sum_probs=28.7
Q ss_pred cEEEEEcCCCc------ccHHHHHHHHHHHHhCCCeEEEEeCcc
Q 010684 11 VHAVCIPSPFQ------SHIKAMLKLAKLLHHKGFHITFVNTEF 48 (504)
Q Consensus 11 ~~il~~~~~~~------GHi~p~l~LA~~L~~~Gh~Vt~~~~~~ 48 (504)
|||+|++.-.. |=-.-.-+|.++|+++||+|.++.|..
T Consensus 6 ~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 6 FKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred cEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 89999875321 223346788999999999999999854
No 353
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.88 E-value=74 Score=30.90 Aligned_cols=56 Identities=11% Similarity=0.275 Sum_probs=40.0
Q ss_pred hcCCCcceEEecCCchhHHHhhhc----CCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcC
Q 010684 377 LKHPSIGGFLTHCGWNSIVESLCS----GVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEG 452 (504)
Q Consensus 377 L~~~~~~~~I~HGG~gs~~eal~~----GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~ 452 (504)
...+++ +|+=||-||+..+++. ++|++.+-. -+ +|.- ..++.+++.++|.+++++
T Consensus 66 ~~~~Dl--vi~iGGDGTlL~aar~~~~~~iPilGIN~--------G~------lGFL-----t~~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 66 DSSMKF--AIVLGGDGTVLSAARQLAPCGIPLLTINT--------GH------LGFL-----TEAYLNQLDEAIDQVLAG 124 (305)
T ss_pred ccCcCE--EEEEeCcHHHHHHHHHhcCCCCcEEEEeC--------CC------Cccc-----ccCCHHHHHHHHHHHHcC
Confidence 345677 9999999999999774 778877643 11 2211 245678999999999876
Q ss_pred c
Q 010684 453 E 453 (504)
Q Consensus 453 ~ 453 (504)
.
T Consensus 125 ~ 125 (305)
T PRK02649 125 Q 125 (305)
T ss_pred C
Confidence 5
No 354
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=35.83 E-value=2.2e+02 Score=22.50 Aligned_cols=84 Identities=18% Similarity=0.168 Sum_probs=52.8
Q ss_pred ccHHHHHHHHHHHHhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCCCCcccHHHHHHHHHHhh
Q 010684 22 SHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTAQDAYSLGENIINNV 101 (504)
Q Consensus 22 GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (504)
++=.-++.+++.|.+.|+++. +| +...+.+.+. |+.+..+.... . .
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l~-aT-~gT~~~l~~~----------gi~~~~v~~~~-~---------------------~ 55 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKLV-AT-EGTAKYLQEA----------GIPVEVVNKVS-E---------------------G 55 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEEE-Ec-hHHHHHHHHc----------CCeEEEEeecC-C---------------------C
Confidence 455678899999999999994 44 3445555554 66655443110 0 1
Q ss_pred cchHHHHHHHHhhcCCCCCCCCeeEEEEcCC-------cchHHHHHHHcCCCeEE
Q 010684 102 LLHPFLDLLAKLNDSSNSVNPAVSCIISDGF-------LPFTITAAQQLGLPIVL 149 (504)
Q Consensus 102 ~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~-------~~~~~~~A~~lgiP~v~ 149 (504)
.+.+.++++. . ++|+||.-+- .+.-...|-.+|||++.
T Consensus 56 -~~~i~~~i~~---~------~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 56 -RPNIVDLIKN---G------EIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred -chhHHHHHHc---C------CeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 2333344433 2 8899997432 23566778999999985
No 355
>PRK09165 replicative DNA helicase; Provisional
Probab=35.69 E-value=2.3e+02 Score=29.69 Aligned_cols=44 Identities=14% Similarity=0.101 Sum_probs=35.0
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhC---------------CCeEEEEeCccchHHHHh
Q 010684 12 HAVCIPSPFQSHIKAMLKLAKLLHHK---------------GFHITFVNTEFNHRRLLK 55 (504)
Q Consensus 12 ~il~~~~~~~GHi~p~l~LA~~L~~~---------------Gh~Vt~~~~~~~~~~~~~ 55 (504)
=+++...|+.|-..-.+.+|...+.+ |..|.|++-+...+.+..
T Consensus 219 livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~ 277 (497)
T PRK09165 219 LIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLAT 277 (497)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHH
Confidence 46677778899999999999888753 889999998877665544
No 356
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=35.66 E-value=1.4e+02 Score=31.23 Aligned_cols=31 Identities=16% Similarity=0.376 Sum_probs=25.6
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeC
Q 010684 11 VHAVCIPSPFQSHIKAMLKLAKLLHHK--GFHITFVNT 46 (504)
Q Consensus 11 ~~il~~~~~~~GHi~p~l~LA~~L~~~--Gh~Vt~~~~ 46 (504)
||||++-.|++.| +|+++|++. |++|..+-.
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g 33 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSS 33 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEEC
Confidence 6999999999888 578888887 999887744
No 357
>PRK05636 replicative DNA helicase; Provisional
Probab=35.58 E-value=1e+02 Score=32.41 Aligned_cols=45 Identities=7% Similarity=0.066 Sum_probs=34.9
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHH-hCCCeEEEEeCccchHHHHh
Q 010684 11 VHAVCIPSPFQSHIKAMLKLAKLLH-HKGFHITFVNTEFNHRRLLK 55 (504)
Q Consensus 11 ~~il~~~~~~~GHi~p~l~LA~~L~-~~Gh~Vt~~~~~~~~~~~~~ 55 (504)
-=|++...|+.|-..-.+.+|...+ +.|..|.|++.+...+.+..
T Consensus 266 ~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~ 311 (505)
T PRK05636 266 QMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVM 311 (505)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHH
Confidence 3456777888999999999998876 56999999998876655543
No 358
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=35.42 E-value=2.3e+02 Score=25.82 Aligned_cols=46 Identities=13% Similarity=0.042 Sum_probs=34.2
Q ss_pred chhhhccccCCCCCeeEEEecCCccccCHHHHHHHHHHHHhCCCCEE
Q 010684 292 ETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFL 338 (504)
Q Consensus 292 ~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i 338 (504)
.+.+.+|+... .+.+.||=+-|..+-.........++|+++|..+.
T Consensus 21 ~~~i~n~l~g~-~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~ 66 (224)
T COG3340 21 LPFIANFLQGK-RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVS 66 (224)
T ss_pred hHHHHHHhcCC-CceEEEEecCccccchHHHHHHHHHHHHHcCCeee
Confidence 34455666554 56899998888776666778889999999987665
No 359
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=35.31 E-value=3.9e+02 Score=25.19 Aligned_cols=44 Identities=11% Similarity=0.180 Sum_probs=33.5
Q ss_pred hHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc--hHHHHHHHcCCCeEEEccc
Q 010684 104 HPFLDLLAKLNDSSNSVNPAVSCIISDGFLP--FTITAAQQLGLPIVLFFTI 153 (504)
Q Consensus 104 ~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~--~~~~~A~~lgiP~v~~~~~ 153 (504)
..+.++.+.+++. +..+|+++.... .+-.+|+..|+|.+.+.+.
T Consensus 204 ~~l~~l~~~ik~~------~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~ 249 (266)
T cd01018 204 ADLKRLIDLAKEK------GVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPL 249 (266)
T ss_pred HHHHHHHHHHHHc------CCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCc
Confidence 3555666666665 889999998665 5678899999998887644
No 360
>PLN02891 IMP cyclohydrolase
Probab=35.31 E-value=2.3e+02 Score=29.67 Aligned_cols=56 Identities=20% Similarity=0.184 Sum_probs=36.6
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCC--CCCCCC
Q 010684 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIP--DGLPAS 80 (504)
Q Consensus 10 ~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~--~~~~~~ 80 (504)
..|-++++. ++=.-+..+|+.|.+.|.++. ++..-...+++. |+.+..+. .++|+.
T Consensus 21 ~~krALISV---sDKtgi~~fAk~L~~~gveIi--STgGTak~L~e~----------Gi~v~~Vsd~TgfPEi 78 (547)
T PLN02891 21 GKKQALISL---SDKTDLALLANGLQELGYTIV--STGGTASALEAA----------GVSVTKVEELTNFPEM 78 (547)
T ss_pred cccEEEEEE---ecccCHHHHHHHHHHCCCEEE--EcchHHHHHHHc----------CCceeeHHhccCCchh
Confidence 344444433 344457899999999988875 444445556665 78877775 467776
No 361
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=35.20 E-value=69 Score=20.97 Aligned_cols=26 Identities=15% Similarity=0.437 Sum_probs=18.0
Q ss_pred cHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 010684 438 IRNEVEKLVREMMEGEKGKQMRNKAMEW 465 (504)
Q Consensus 438 ~~~~l~~ai~~vl~~~~~~~~~~~a~~l 465 (504)
++++|..||..+.++. -++++.|+++
T Consensus 1 tee~l~~Ai~~v~~g~--~S~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK--MSIRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTTS--S-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCC--CCHHHHHHHH
Confidence 5789999999998762 1677666654
No 362
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=35.13 E-value=85 Score=30.67 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=28.0
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCcc
Q 010684 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (504)
Q Consensus 11 ~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~ 48 (504)
++|.++=.|++| .+||+.|++.||+|++..-.+
T Consensus 2 ~kI~ViGaGswG-----TALA~~la~ng~~V~lw~r~~ 34 (329)
T COG0240 2 MKIAVIGAGSWG-----TALAKVLARNGHEVRLWGRDE 34 (329)
T ss_pred ceEEEEcCChHH-----HHHHHHHHhcCCeeEEEecCH
Confidence 578888888877 589999999999999998643
No 363
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=35.13 E-value=65 Score=30.40 Aligned_cols=37 Identities=8% Similarity=0.023 Sum_probs=32.1
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCc
Q 010684 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (504)
Q Consensus 11 ~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~ 47 (504)
|.|++.-=|+-|-..-...||..|+++|++|.++=..
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 5788887778899999999999999999999988543
No 364
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=35.06 E-value=91 Score=30.51 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=28.2
Q ss_pred EcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 010684 16 IPSPFQSHIKAMLKLAKLLHHKGFHITFVNT 46 (504)
Q Consensus 16 ~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~ 46 (504)
++.|+.|-.--.+.||+.|+++|..|-+++=
T Consensus 55 ltvGGtGKTP~vi~la~~l~~rG~~~gvvSR 85 (336)
T COG1663 55 LTVGGTGKTPVVIWLAEALQARGVRVGVVSR 85 (336)
T ss_pred EEECCCCcCHHHHHHHHHHHhcCCeeEEEec
Confidence 4778889999999999999999999999874
No 365
>PRK08309 short chain dehydrogenase; Provisional
Probab=35.01 E-value=3.1e+02 Score=24.03 Aligned_cols=29 Identities=17% Similarity=0.351 Sum_probs=21.2
Q ss_pred EEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 010684 14 VCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNT 46 (504)
Q Consensus 14 l~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~ 46 (504)
++++.++ | +- -++++.|.++|++|++.+-
T Consensus 3 vlVtGGt-G-~g--g~la~~L~~~G~~V~v~~R 31 (177)
T PRK08309 3 ALVIGGT-G-ML--KRVSLWLCEKGFHVSVIAR 31 (177)
T ss_pred EEEECcC-H-HH--HHHHHHHHHCcCEEEEEEC
Confidence 4455554 6 22 4599999999999998864
No 366
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=34.78 E-value=39 Score=27.34 Aligned_cols=30 Identities=10% Similarity=0.236 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCccchHHH
Q 010684 24 IKAMLKLAKLLHHKGFHITFVNTEFNHRRL 53 (504)
Q Consensus 24 i~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~ 53 (504)
+.|++.+.-.+.-+||+++++.|..+.+.+
T Consensus 9 Vk~L~eIll~FilrGHKT~vyLP~yY~~~~ 38 (122)
T PF14626_consen 9 VKALVEILLHFILRGHKTVVYLPKYYKNYV 38 (122)
T ss_pred HHHHHHHHHHHHhccCeeEEEChHHHhccc
Confidence 568888888889999999999998877644
No 367
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=34.65 E-value=2e+02 Score=28.16 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=24.8
Q ss_pred CeeEEEE-cCCcc-hHHHHHHHcCCCeEEEccccHH
Q 010684 123 AVSCIIS-DGFLP-FTITAAQQLGLPIVLFFTISAC 156 (504)
Q Consensus 123 ~~DlvI~-D~~~~-~~~~~A~~lgiP~v~~~~~~~~ 156 (504)
.||+||+ |...- .++.=|.++|||+|.+.-+.+-
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~d 187 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNCD 187 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCCC
Confidence 6888775 44322 6777799999999998766543
No 368
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=34.55 E-value=48 Score=31.66 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=20.9
Q ss_pred HHHHHHHhCCCeEEEEeCccchHHHHhh
Q 010684 29 KLAKLLHHKGFHITFVNTEFNHRRLLKA 56 (504)
Q Consensus 29 ~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~ 56 (504)
.+|..|.+.||+|++++-....+.+.+.
T Consensus 5 ~~a~~L~~~G~~V~l~~r~~~~~~i~~~ 32 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARGEQLEALNQE 32 (293)
T ss_pred HHHHHHHhCCCcEEEEecHHHHHHHHHC
Confidence 4788999999999999875444455444
No 369
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=34.34 E-value=60 Score=28.52 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=21.2
Q ss_pred CeeEEEEcCCcch--HHHHHHHcCCCeEEEc
Q 010684 123 AVSCIISDGFLPF--TITAAQQLGLPIVLFF 151 (504)
Q Consensus 123 ~~DlvI~D~~~~~--~~~~A~~lgiP~v~~~ 151 (504)
+||+||....... ....-++.|||++.+.
T Consensus 69 ~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 69 KPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 9999998654432 4444578999998874
No 370
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=34.29 E-value=72 Score=32.18 Aligned_cols=44 Identities=14% Similarity=0.101 Sum_probs=35.3
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHH
Q 010684 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLL 54 (504)
Q Consensus 10 ~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~ 54 (504)
++||++.-.|+-|=+. ...+.+.|.+.|++|.++.++.-...+.
T Consensus 3 ~k~IllgiTGSiaa~~-~~~ll~~L~~~g~~V~vv~T~~A~~fv~ 46 (390)
T TIGR00521 3 NKKILLGVTGGIAAYK-TVELVRELVRQGAEVKVIMTEAAKKFIT 46 (390)
T ss_pred CCEEEEEEeCHHHHHH-HHHHHHHHHhCCCEEEEEECHhHHHHHH
Confidence 5789988888776644 8999999999999999998876555443
No 371
>PRK13057 putative lipid kinase; Reviewed
Probab=33.92 E-value=67 Score=30.76 Aligned_cols=30 Identities=13% Similarity=0.274 Sum_probs=24.5
Q ss_pred cCCCcceEEecCCchhHHHhh----hcCCcEEecCC
Q 010684 378 KHPSIGGFLTHCGWNSIVESL----CSGVPMICWPF 409 (504)
Q Consensus 378 ~~~~~~~~I~HGG~gs~~eal----~~GvP~v~~P~ 409 (504)
...++ +|..||-||+.|++ ..++|+-++|.
T Consensus 49 ~~~d~--iiv~GGDGTv~~v~~~l~~~~~~lgiiP~ 82 (287)
T PRK13057 49 DGVDL--VIVGGGDGTLNAAAPALVETGLPLGILPL 82 (287)
T ss_pred cCCCE--EEEECchHHHHHHHHHHhcCCCcEEEECC
Confidence 44566 99999999999986 34789999996
No 372
>PRK08322 acetolactate synthase; Reviewed
Probab=33.79 E-value=1.6e+02 Score=31.14 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=22.1
Q ss_pred cceEEecCCch------hHHHhhhcCCcEEecC
Q 010684 382 IGGFLTHCGWN------SIVESLCSGVPMICWP 408 (504)
Q Consensus 382 ~~~~I~HGG~g------s~~eal~~GvP~v~~P 408 (504)
.+++++|.|-| .+.+|...++|+|++-
T Consensus 64 ~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 64 AGVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CEEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 33488888754 7899999999999985
No 373
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=33.48 E-value=2.5e+02 Score=25.23 Aligned_cols=119 Identities=13% Similarity=0.039 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHhhccCcEEEeecchHhhhcCCCcceEEecCCchhHHHhhhc
Q 010684 321 QQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCS 400 (504)
Q Consensus 321 ~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~I~HGG~gs~~eal~~ 400 (504)
++-..+.+.++..+..++..-|.- ..+.+.|.++.+.+++= =||++ .=.++|..+..+|+.+
T Consensus 66 ~~d~~l~~~l~~~~~dlvvLAGyM------rIL~~~fl~~~~grIlN----------IHPSL--LP~f~G~h~~~~A~~a 127 (200)
T COG0299 66 AFDRALVEALDEYGPDLVVLAGYM------RILGPEFLSRFEGRILN----------IHPSL--LPAFPGLHAHEQALEA 127 (200)
T ss_pred HHHHHHHHHHHhcCCCEEEEcchH------HHcCHHHHHHhhcceEe----------cCccc--ccCCCCchHHHHHHHc
Confidence 345567777777777777666654 23555655544442221 27888 8889999999999999
Q ss_pred CCcEEecCCCC--CcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Q 010684 401 GVPMICWPFTG--DQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKG 467 (504)
Q Consensus 401 GvP~v~~P~~~--DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~ 467 (504)
|+..-.+-++. +.-+-+--+ .+ ..+.+. ..-|.|.|.+.|.+.- -. -|-.-.+.+.+
T Consensus 128 G~k~sG~TVH~V~e~vD~GpII-~Q--~~Vpv~---~~Dt~etl~~RV~~~E-h~---lyp~~v~~~~~ 186 (200)
T COG0299 128 GVKVSGCTVHFVTEGVDTGPII-AQ--AAVPVL---PGDTAETLEARVLEQE-HR---LYPLAVKLLAE 186 (200)
T ss_pred CCCccCcEEEEEccCCCCCCeE-EE--Eeeeec---CCCCHHHHHHHHHHHH-HH---HHHHHHHHHHh
Confidence 99987777643 333334333 22 233444 2348899999887742 22 45555555544
No 374
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=33.46 E-value=3.5e+02 Score=24.18 Aligned_cols=99 Identities=16% Similarity=0.105 Sum_probs=56.3
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe---Cc-cchH-HHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCCCC
Q 010684 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVN---TE-FNHR-RLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPT 86 (504)
Q Consensus 12 ~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~---~~-~~~~-~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~ 86 (504)
=|.+++..+.|-....+-+|-.-.-+|.+|.++- .. .+-+ ...... + .++.|+..++.+.-. +
T Consensus 30 li~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~~------~-~~v~~~~~~~g~tw~-----~ 97 (198)
T COG2109 30 LIIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEKF------G-LGVEFHGMGEGFTWE-----T 97 (198)
T ss_pred eEEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHhh------c-cceeEEecCCceeCC-----C
Confidence 3677788888888877777776677777877754 22 2222 111110 0 168888888655332 1
Q ss_pred cccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc
Q 010684 87 AQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLP 134 (504)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~ 134 (504)
. +...-.. .+ ...++...+.+.+. ++|+||.|-+++
T Consensus 98 ~-~~~~d~~----aa-~~~w~~a~~~l~~~------~ydlviLDEl~~ 133 (198)
T COG2109 98 Q-DREADIA----AA-KAGWEHAKEALADG------KYDLVILDELNY 133 (198)
T ss_pred c-CcHHHHH----HH-HHHHHHHHHHHhCC------CCCEEEEehhhH
Confidence 1 1111111 12 34444444555544 899999998876
No 375
>PRK07206 hypothetical protein; Provisional
Probab=33.31 E-value=1.6e+02 Score=29.82 Aligned_cols=33 Identities=15% Similarity=0.069 Sum_probs=24.3
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCcc
Q 010684 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (504)
Q Consensus 11 ~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~ 48 (504)
++|+++-..+. ...++++++++|+++..++...
T Consensus 3 k~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~~ 35 (416)
T PRK07206 3 KKVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSSC 35 (416)
T ss_pred CeEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcCC
Confidence 36777765433 3468999999999999887643
No 376
>PRK11269 glyoxylate carboligase; Provisional
Probab=32.98 E-value=2.4e+02 Score=30.27 Aligned_cols=27 Identities=19% Similarity=0.517 Sum_probs=21.8
Q ss_pred cceEEecCC------chhHHHhhhcCCcEEecC
Q 010684 382 IGGFLTHCG------WNSIVESLCSGVPMICWP 408 (504)
Q Consensus 382 ~~~~I~HGG------~gs~~eal~~GvP~v~~P 408 (504)
.+++++|.| .+.+++|.+.++|+|++.
T Consensus 69 ~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~ 101 (591)
T PRK11269 69 IGVCIGTSGPAGTDMITGLYSASADSIPILCIT 101 (591)
T ss_pred cEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 333777766 678999999999999985
No 377
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=32.89 E-value=96 Score=29.74 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=20.8
Q ss_pred CCcceEEecCCchhHHHhhhc-----CCcEE-ecCC
Q 010684 380 PSIGGFLTHCGWNSIVESLCS-----GVPMI-CWPF 409 (504)
Q Consensus 380 ~~~~~~I~HGG~gs~~eal~~-----GvP~v-~~P~ 409 (504)
+++ +|..||-||+.|++.. ..|.+ ++|.
T Consensus 58 ~d~--ivv~GGDGTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 58 VDT--VIAGGGDGTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred CCE--EEEECCCChHHHHHHHHhcCCCCCcEEEEcC
Confidence 455 9999999999997653 34444 5896
No 378
>PRK13059 putative lipid kinase; Reviewed
Probab=32.88 E-value=1.1e+02 Score=29.48 Aligned_cols=29 Identities=14% Similarity=0.148 Sum_probs=23.2
Q ss_pred CCCcceEEecCCchhHHHhh------hcCCcEEecCC
Q 010684 379 HPSIGGFLTHCGWNSIVESL------CSGVPMICWPF 409 (504)
Q Consensus 379 ~~~~~~~I~HGG~gs~~eal------~~GvP~v~~P~ 409 (504)
.+++ +|..||-||+.|++ ..++|+-++|.
T Consensus 56 ~~d~--vi~~GGDGTv~evv~gl~~~~~~~~lgviP~ 90 (295)
T PRK13059 56 SYKY--ILIAGGDGTVDNVVNAMKKLNIDLPIGILPV 90 (295)
T ss_pred CCCE--EEEECCccHHHHHHHHHHhcCCCCcEEEECC
Confidence 3455 99999999998885 23589999997
No 379
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=32.78 E-value=3.3e+02 Score=23.68 Aligned_cols=96 Identities=14% Similarity=0.102 Sum_probs=57.7
Q ss_pred HHHHHHHHHhCCCeEEEEeCccc-hHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCCCCcccHHHHHHHHHHhhcchH
Q 010684 27 MLKLAKLLHHKGFHITFVNTEFN-HRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTAQDAYSLGENIINNVLLHP 105 (504)
Q Consensus 27 ~l~LA~~L~~~Gh~Vt~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (504)
+..+.+...++|..|.+++..+. .+.+.+. ....+|++++....+++-. ...
T Consensus 37 ~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~----l~~~yP~l~ivg~~~g~f~-----------------------~~~ 89 (172)
T PF03808_consen 37 FPDLLRRAEQRGKRIFLLGGSEEVLEKAAAN----LRRRYPGLRIVGYHHGYFD-----------------------EEE 89 (172)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHH----HHHHCCCeEEEEecCCCCC-----------------------hhh
Confidence 44555566667999999987543 2222222 1123568887765433210 233
Q ss_pred HHHHHHHhhcCCCCCCCCeeEEEEcCCcc----hHHHHHHHcCCCeEEEccccHH
Q 010684 106 FLDLLAKLNDSSNSVNPAVSCIISDGFLP----FTITAAQQLGLPIVLFFTISAC 156 (504)
Q Consensus 106 ~~~ll~~l~~~~~~~~~~~DlvI~D~~~~----~~~~~A~~lgiP~v~~~~~~~~ 156 (504)
.+++++.+++. +||+|++-.-++ +.....+.++.+ +.+....+.
T Consensus 90 ~~~i~~~I~~~------~pdiv~vglG~PkQE~~~~~~~~~l~~~-v~i~vG~~~ 137 (172)
T PF03808_consen 90 EEAIINRINAS------GPDIVFVGLGAPKQERWIARHRQRLPAG-VIIGVGGAF 137 (172)
T ss_pred HHHHHHHHHHc------CCCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEECchh
Confidence 44555556555 999999988777 677777888888 444444433
No 380
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=32.76 E-value=4.5e+02 Score=25.21 Aligned_cols=111 Identities=8% Similarity=0.053 Sum_probs=0.0
Q ss_pred CCCCCCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe-CccchHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCC
Q 010684 5 PKACSKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVN-TEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDE 83 (504)
Q Consensus 5 ~~~~~~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~ 83 (504)
+...+++||+++.++.-+.+..++.-.+.=.-...=+.+++ .+......++. |+.+..++......
T Consensus 84 ~~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~----------gIp~~~~~~~~~~~--- 150 (286)
T PRK13011 84 HDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVSNHPDLEPLAAWH----------GIPFHHFPITPDTK--- 150 (286)
T ss_pred eecccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEECCccHHHHHHHh----------CCCEEEeCCCcCch---
Q ss_pred CCCcccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc-hHHHHHHHcCCCeEEEccc
Q 010684 84 SPTAQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLP-FTITAAQQLGLPIVLFFTI 153 (504)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~-~~~~~A~~lgiP~v~~~~~ 153 (504)
... ...+.+.++++ ++|++|.-.+.. -...+-+.+.-.++-++++
T Consensus 151 ---------------~~~-~~~~~~~l~~~---------~~Dlivlagy~~il~~~~l~~~~~~iiNiHpS 196 (286)
T PRK13011 151 ---------------PQQ-EAQVLDVVEES---------GAELVVLARYMQVLSPELCRKLAGRAINIHHS 196 (286)
T ss_pred ---------------hhh-HHHHHHHHHHh---------CcCEEEEeChhhhCCHHHHhhccCCeEEeccc
No 381
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=32.71 E-value=3.8e+02 Score=24.28 Aligned_cols=27 Identities=33% Similarity=0.528 Sum_probs=24.4
Q ss_pred CeeEEEEcCCcchHHHHHHHcCCCeEE
Q 010684 123 AVSCIISDGFLPFTITAAQQLGLPIVL 149 (504)
Q Consensus 123 ~~DlvI~D~~~~~~~~~A~~lgiP~v~ 149 (504)
+.+.+|+-.+.......|++.|+|++.
T Consensus 80 GA~FivsP~~~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 80 GAQFIVSPGLTPELAKHAQDHGIPIIP 106 (204)
T ss_pred CCCEEECCCCCHHHHHHHHHcCCcEEC
Confidence 778999998888899999999999888
No 382
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=32.56 E-value=66 Score=29.65 Aligned_cols=25 Identities=28% Similarity=0.570 Sum_probs=19.5
Q ss_pred cHHHHHHHHHHHHhCCCeEEEEeCc
Q 010684 23 HIKAMLKLAKLLHHKGFHITFVNTE 47 (504)
Q Consensus 23 Hi~p~l~LA~~L~~~Gh~Vt~~~~~ 47 (504)
|...|...|++|.++||+|.++...
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~ 71 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELD 71 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 5668999999999999999999865
No 383
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=32.52 E-value=5.9e+02 Score=26.48 Aligned_cols=27 Identities=11% Similarity=0.345 Sum_probs=23.5
Q ss_pred cccHHHHHHHHHHHHhCCCeEEEEeCc
Q 010684 21 QSHIKAMLKLAKLLHHKGFHITFVNTE 47 (504)
Q Consensus 21 ~GHi~p~l~LA~~L~~~Gh~Vt~~~~~ 47 (504)
-|-..-...|++.|+++|.+|..+-+-
T Consensus 10 vGKT~v~~~L~~~l~~~G~~v~~fKp~ 36 (475)
T TIGR00313 10 AGKSTLTAGLCRILARRGYRVAPFKSQ 36 (475)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 488888999999999999999987653
No 384
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=32.31 E-value=97 Score=25.65 Aligned_cols=43 Identities=16% Similarity=0.164 Sum_probs=26.5
Q ss_pred CCCCCCCCCCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCcc
Q 010684 1 MESKPKACSKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (504)
Q Consensus 1 ~~~~~~~~~~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~ 48 (504)
|..-.....++||.|+=.|--| ..||+.|.++||+|.-+....
T Consensus 1 ~~~~~~~~~~l~I~iIGaGrVG-----~~La~aL~~ag~~v~~v~srs 43 (127)
T PF10727_consen 1 MNTPATQAARLKIGIIGAGRVG-----TALARALARAGHEVVGVYSRS 43 (127)
T ss_dssp -----------EEEEECTSCCC-----CHHHHHHHHTTSEEEEESSCH
T ss_pred CCccccCCCccEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC
Confidence 3333344569999999887666 368999999999998876644
No 385
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=32.30 E-value=3.8e+02 Score=26.92 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=18.9
Q ss_pred CeeEEEEcCCcchHHHHHHHcCCCeEEEcc
Q 010684 123 AVSCIISDGFLPFTITAAQQLGLPIVLFFT 152 (504)
Q Consensus 123 ~~DlvI~D~~~~~~~~~A~~lgiP~v~~~~ 152 (504)
+||++|.+.. ...+|+++++|++.+..
T Consensus 341 ~pdl~ig~~~---~~~~a~~~~~~~~~~~~ 367 (398)
T PF00148_consen 341 KPDLLIGSSH---ERYLAKKLGIPLIRIGF 367 (398)
T ss_dssp T-SEEEESHH---HHHHHHHTT--EEE-SS
T ss_pred CCCEEEechh---hHHHHHHhCCCeEEEeC
Confidence 8999999963 77889999899888543
No 386
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=32.26 E-value=3.4e+02 Score=27.55 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=20.8
Q ss_pred CeeEEEEcCCcchHHHHHHHcCCCeEEE
Q 010684 123 AVSCIISDGFLPFTITAAQQLGLPIVLF 150 (504)
Q Consensus 123 ~~DlvI~D~~~~~~~~~A~~lgiP~v~~ 150 (504)
+||++|.+.. ...+|+++|||++..
T Consensus 356 ~pDl~ig~s~---~~~~a~~~gip~~~~ 380 (410)
T cd01968 356 KADLLVAGGK---ERYLALKLGIPFCDI 380 (410)
T ss_pred CCCEEEECCc---chhhHHhcCCCEEEc
Confidence 8999999953 457899999999854
No 387
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=32.17 E-value=92 Score=31.44 Aligned_cols=46 Identities=15% Similarity=0.219 Sum_probs=28.3
Q ss_pred eEEecCCchhHHHhhhcCCcEEecCCC--CCcchhhhhhhhhcceeEEec
Q 010684 384 GFLTHCGWNSIVESLCSGVPMICWPFT--GDQPTNGRYVCNEWGVGMEIN 431 (504)
Q Consensus 384 ~~I~HGG~gs~~eal~~GvP~v~~P~~--~DQ~~na~rv~~~~G~G~~l~ 431 (504)
+..|.||.-.+.|-=++|+|+|.+--. .-.-.-|.|++. ++++.-.
T Consensus 347 gtC~r~~a~m~keiE~~GiPvv~~~~~~pis~tvGanrivp--~~~ip~P 394 (431)
T TIGR01918 347 GTCTRCGATMVKEIERAGIPVVHMCTVIPIALTVGANRIVP--TIAIPHP 394 (431)
T ss_pred CcchhHHHHHHHHHHHcCCCEEEEeecccHhhhcCccceec--ccCcCCC
Confidence 356777777777778899999976431 122223677744 4444433
No 388
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=32.17 E-value=98 Score=25.61 Aligned_cols=34 Identities=12% Similarity=0.214 Sum_probs=22.3
Q ss_pred cEEEEEcC-CCcccHH--HHHHHHHHHHhCCCeE-EEE
Q 010684 11 VHAVCIPS-PFQSHIK--AMLKLAKLLHHKGFHI-TFV 44 (504)
Q Consensus 11 ~~il~~~~-~~~GHi~--p~l~LA~~L~~~Gh~V-t~~ 44 (504)
||++|+-. +-+|+-. -.+.+|+++.+.||+| +++
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vF 38 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVF 38 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEE
Confidence 34554433 3345544 5788999999999984 655
No 389
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=32.15 E-value=39 Score=31.63 Aligned_cols=28 Identities=14% Similarity=0.225 Sum_probs=22.2
Q ss_pred CCcceEEecCCchhHHHhhhc----CCcEEecCC
Q 010684 380 PSIGGFLTHCGWNSIVESLCS----GVPMICWPF 409 (504)
Q Consensus 380 ~~~~~~I~HGG~gs~~eal~~----GvP~v~~P~ 409 (504)
+++ +|+-||-||+..+++. ++|++.+-.
T Consensus 26 ~Dl--vi~iGGDGTlL~a~~~~~~~~~PvlGIN~ 57 (246)
T PRK04761 26 ADV--IVALGGDGFMLQTLHRYMNSGKPVYGMNR 57 (246)
T ss_pred CCE--EEEECCCHHHHHHHHHhcCCCCeEEEEeC
Confidence 566 9999999999988664 678776654
No 390
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=32.07 E-value=1.6e+02 Score=25.31 Aligned_cols=31 Identities=13% Similarity=0.216 Sum_probs=26.1
Q ss_pred cCCCcccHHHHHHHHHHHHhCCCeEEEEeCc
Q 010684 17 PSPFQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (504)
Q Consensus 17 ~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~ 47 (504)
+-|+-|-..-.+.||..|++.|++|.++-..
T Consensus 7 ~kgG~GKTt~a~~LA~~la~~g~~vllvD~D 37 (169)
T cd02037 7 GKGGVGKSTVAVNLALALAKLGYKVGLLDAD 37 (169)
T ss_pred CCCcCChhHHHHHHHHHHHHcCCcEEEEeCC
Confidence 3456788899999999999999999998543
No 391
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=32.02 E-value=92 Score=31.44 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=20.1
Q ss_pred eEEecCCchhHHHhhhcCCcEEecCC
Q 010684 384 GFLTHCGWNSIVESLCSGVPMICWPF 409 (504)
Q Consensus 384 ~~I~HGG~gs~~eal~~GvP~v~~P~ 409 (504)
+..|.||.-.+.|-=++|+|+|.+--
T Consensus 347 gtCtrcga~m~keiE~~GIPvV~i~~ 372 (431)
T TIGR01917 347 GTCTRCGATMVKEIERAGIPVVHICT 372 (431)
T ss_pred CcchhHHHHHHHHHHHcCCCEEEEee
Confidence 36677777777777889999997753
No 392
>PRK06270 homoserine dehydrogenase; Provisional
Probab=31.79 E-value=2.9e+02 Score=27.25 Aligned_cols=59 Identities=14% Similarity=0.143 Sum_probs=36.6
Q ss_pred chHhhhcCCCcceEEe------cCC---chhHHHhhhcCCcEEe---cCCCCCcchhhhhhhhhcceeEEec
Q 010684 372 PQEEVLKHPSIGGFLT------HCG---WNSIVESLCSGVPMIC---WPFTGDQPTNGRYVCNEWGVGMEIN 431 (504)
Q Consensus 372 pq~~lL~~~~~~~~I~------HGG---~gs~~eal~~GvP~v~---~P~~~DQ~~na~rv~~~~G~G~~l~ 431 (504)
...++|..+++.+||- |+| ..-+.++|.+|+++|+ -|+...-....... ++.|+.+...
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A-~~~g~~~~~e 150 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELA-KKNGVRFRYE 150 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHH-HHcCCEEEEe
Confidence 4556776555544766 443 4456899999999999 47754333343334 5556666543
No 393
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=31.63 E-value=1.7e+02 Score=19.90 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=26.0
Q ss_pred cHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHH
Q 010684 438 IRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGS-SSLNLDKLVNE 489 (504)
Q Consensus 438 ~~~~l~~ai~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~-~~~~~~~~~~~ 489 (504)
|.++|..+|+++|.+.+-+.. -.+++.+.+.+.++-+-+ ....+.++|.+
T Consensus 1 td~~i~~~i~~iL~~~dl~~v--T~k~vr~~Le~~~~~dL~~~K~~I~~~I~~ 51 (54)
T PF08766_consen 1 TDEEIREAIREILREADLDTV--TKKQVREQLEERFGVDLSSRKKFIKELIDE 51 (54)
T ss_dssp -HHHHHHHHHHHHTTS-GGG----HHHHHHHHHHH-SS--SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHhHh--hHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 467899999999987643333 345666666655433322 23344444443
No 394
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=31.61 E-value=3.2e+02 Score=23.87 Aligned_cols=105 Identities=19% Similarity=0.164 Sum_probs=60.7
Q ss_pred CCeeEEEecCCccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHhhccCcEEEeecchHhhhcCCCcc
Q 010684 304 PKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIG 383 (504)
Q Consensus 304 ~~~~V~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~lL~~~~~~ 383 (504)
++.+-.+++|.+. +.+++-++.+|.+++..-... ..-. .... ....+.+.+++|+.+|+
T Consensus 36 g~tvgIiG~G~IG-------~~vA~~l~~fG~~V~~~d~~~----------~~~~-~~~~--~~~~~~~l~ell~~aDi- 94 (178)
T PF02826_consen 36 GKTVGIIGYGRIG-------RAVARRLKAFGMRVIGYDRSP----------KPEE-GADE--FGVEYVSLDELLAQADI- 94 (178)
T ss_dssp TSEEEEESTSHHH-------HHHHHHHHHTT-EEEEEESSC----------HHHH-HHHH--TTEEESSHHHHHHH-SE-
T ss_pred CCEEEEEEEcCCc-------CeEeeeeecCCceeEEecccC----------Chhh-hccc--ccceeeehhhhcchhhh-
Confidence 5678999999886 556677777888887665433 1100 0011 11266788899999998
Q ss_pred eEEecCCchhHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEe-cCC-CCCccHHHHHHHHH
Q 010684 384 GFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEI-NGD-DEDVIRNEVEKLVR 447 (504)
Q Consensus 384 ~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l-~~~-~~~~~~~~l~~ai~ 447 (504)
++.|.-.+. ...+..++..+ +.++=|..+ +.. -+-++++.|.++++
T Consensus 95 -v~~~~plt~----------------~T~~li~~~~l-~~mk~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 95 -VSLHLPLTP----------------ETRGLINAEFL-AKMKPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp -EEE-SSSST----------------TTTTSBSHHHH-HTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred -hhhhhcccc----------------ccceeeeeeee-eccccceEEEeccchhhhhhhHHHHHHh
Confidence 876654321 12566777777 666655333 320 13466677766664
No 395
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=31.61 E-value=49 Score=32.06 Aligned_cols=39 Identities=31% Similarity=0.326 Sum_probs=31.4
Q ss_pred hhcCCCcceEEecCCchhHHHhhh----cCCcEEecCCCCCcc
Q 010684 376 VLKHPSIGGFLTHCGWNSIVESLC----SGVPMICWPFTGDQP 414 (504)
Q Consensus 376 lL~~~~~~~~I~HGG~gs~~eal~----~GvP~v~~P~~~DQ~ 414 (504)
.|..-++.++|.=||.||..-|.. +++|+|++|.+.|=.
T Consensus 86 ~l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTIDND 128 (301)
T TIGR02482 86 NLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTIDND 128 (301)
T ss_pred HHHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeecccccCC
Confidence 566667778999999999977753 799999999876544
No 396
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.46 E-value=82 Score=33.63 Aligned_cols=54 Identities=19% Similarity=0.383 Sum_probs=39.0
Q ss_pred CCCcceEEecCCchhHHHhhhc----CCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCc
Q 010684 379 HPSIGGFLTHCGWNSIVESLCS----GVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE 453 (504)
Q Consensus 379 ~~~~~~~I~HGG~gs~~eal~~----GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~ 453 (504)
.+++ +|+-||-||+..+.+. ++|++.+-.. .+|- + ..++.+++.++|.+++++.
T Consensus 348 ~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGin~G------------~lGF---L----~~~~~~~~~~~l~~~~~g~ 405 (569)
T PRK14076 348 EISH--IISIGGDGTVLRASKLVNGEEIPIICINMG------------TVGF---L----TEFSKEEIFKAIDSIISGE 405 (569)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcCC------------CCCc---C----cccCHHHHHHHHHHHHcCC
Confidence 4566 9999999999999773 6787776541 1222 1 2466788999999998765
No 397
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=31.42 E-value=2.6e+02 Score=25.42 Aligned_cols=45 Identities=16% Similarity=0.062 Sum_probs=34.3
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHHhh
Q 010684 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKA 56 (504)
Q Consensus 12 ~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~ 56 (504)
-+++.-.|+.|-..-.+.++....++|+.|.+++.+...+.+.+.
T Consensus 18 ~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~ 62 (224)
T TIGR03880 18 VIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGY 62 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHH
Confidence 455555567788888888888887889999999988766655544
No 398
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=31.38 E-value=73 Score=31.30 Aligned_cols=33 Identities=12% Similarity=0.088 Sum_probs=26.8
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCcc
Q 010684 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (504)
Q Consensus 11 ~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~ 48 (504)
|||.|+-.|..|. .+|..|.++||+|+++....
T Consensus 3 mkI~IiG~G~mG~-----~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIGC-----YLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHHH-----HHHHHHHhcCCcEEEEecHH
Confidence 6899997777764 57888999999999997543
No 399
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=31.26 E-value=89 Score=27.62 Aligned_cols=37 Identities=24% Similarity=0.468 Sum_probs=27.6
Q ss_pred HHHHHhhcCCCCCCCCeeEEEEcC--CcchHHHHHHHcCCCeEEE
Q 010684 108 DLLAKLNDSSNSVNPAVSCIISDG--FLPFTITAAQQLGLPIVLF 150 (504)
Q Consensus 108 ~ll~~l~~~~~~~~~~~DlvI~D~--~~~~~~~~A~~lgiP~v~~ 150 (504)
.+.+...+. ++|.|++-. -+..+..+|.++|+|+|.+
T Consensus 44 ~~~~~~~~~------~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 44 ELAERYKDD------GIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred HHHHHhccc------CCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 555555544 789999543 2447999999999999995
No 400
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=31.24 E-value=62 Score=33.53 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=32.3
Q ss_pred CCCCCCCCCCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 010684 1 MESKPKACSKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNT 46 (504)
Q Consensus 1 ~~~~~~~~~~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~ 46 (504)
|.|++.+.++.+|+++=.|..| +..|+.|.++|++|+++-.
T Consensus 1 ~~~~~~~~~~~~VaIIGAG~aG-----L~aA~~l~~~G~~v~vfE~ 41 (461)
T PLN02172 1 MAPAQNPINSQHVAVIGAGAAG-----LVAARELRREGHTVVVFER 41 (461)
T ss_pred CCCcccCCCCCCEEEECCcHHH-----HHHHHHHHhcCCeEEEEec
Confidence 6676666667899998777554 6779999999999999864
No 401
>PRK08116 hypothetical protein; Validated
Probab=31.23 E-value=4.6e+02 Score=24.80 Aligned_cols=37 Identities=22% Similarity=0.056 Sum_probs=26.1
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccc
Q 010684 13 AVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFN 49 (504)
Q Consensus 13 il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~ 49 (504)
++|.-.++.|-..=..++|++|.++|+.|.+++....
T Consensus 117 l~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~l 153 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQL 153 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 5555555667777777888888888888877764443
No 402
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=31.16 E-value=1.7e+02 Score=27.96 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=19.0
Q ss_pred HHHHHHHHhCCCeEEEEeCccch
Q 010684 28 LKLAKLLHHKGFHITFVNTEFNH 50 (504)
Q Consensus 28 l~LA~~L~~~Gh~Vt~~~~~~~~ 50 (504)
.++|..|+++|++|.++...+..
T Consensus 3 ~a~a~~~a~~g~~vllv~~Dp~~ 25 (284)
T TIGR00345 3 CATAIRLAEQGKKVLLVSTDPAH 25 (284)
T ss_pred HHHHHHHHHCCCeEEEEECCCCC
Confidence 46888999999999999976543
No 403
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=31.03 E-value=59 Score=23.38 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=17.6
Q ss_pred HHHHHHHHHhCCCeEEEEeCc
Q 010684 27 MLKLAKLLHHKGFHITFVNTE 47 (504)
Q Consensus 27 ~l~LA~~L~~~Gh~Vt~~~~~ 47 (504)
-+..|..|+++|++|+++-..
T Consensus 8 Gl~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 8 GLAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHHCCCcEEEEecC
Confidence 467899999999999998643
No 404
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=30.99 E-value=75 Score=29.68 Aligned_cols=108 Identities=12% Similarity=0.133 Sum_probs=56.4
Q ss_pred HHHHHHHHHhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCCCCCCCC-CCCCCCcccHHHHHHHHHHhhcchH
Q 010684 27 MLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPAS-SDESPTAQDAYSLGENIINNVLLHP 105 (504)
Q Consensus 27 ~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (504)
+-..++.+.+.|-+|.+.++..+...+....... .+-+..+|...+.. ++ +..-....++. +..-+-.+.
T Consensus 117 ~~ea~~~~~~~~~rVflt~G~~~l~~f~~~~~~~------~~~~Rvlp~~~~~~~~~--~~~~p~~~Iia-~~GPfs~~~ 187 (257)
T COG2099 117 IEEAAEAAKQLGRRVFLTTGRQNLAHFVAADAHS------HVLARVLPPPDVLAKCE--DLGVPPARIIA-MRGPFSEED 187 (257)
T ss_pred HHHHHHHHhccCCcEEEecCccchHHHhcCcccc------eEEEEEcCchHHHHHHH--hcCCChhhEEE-ecCCcChHH
Confidence 4456777777788888888888887776652111 23334444211100 00 00000001111 111110122
Q ss_pred HHHHHHHhhcCCCCCCCCeeEEEEcC-----CcchHHHHHHHcCCCeEEEcc
Q 010684 106 FLDLLAKLNDSSNSVNPAVSCIISDG-----FLPFTITAAQQLGLPIVLFFT 152 (504)
Q Consensus 106 ~~~ll~~l~~~~~~~~~~~DlvI~D~-----~~~~~~~~A~~lgiP~v~~~~ 152 (504)
=..+++++ +.|+||+=. .+..=..+|+.+|||+|.+--
T Consensus 188 n~all~q~---------~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~R 230 (257)
T COG2099 188 NKALLEQY---------RIDVVVTKNSGGAGGTYEKIEAARELGIPVIMIER 230 (257)
T ss_pred HHHHHHHh---------CCCEEEEccCCcccCcHHHHHHHHHcCCcEEEEec
Confidence 23566665 789999543 334567899999999999743
No 405
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=30.86 E-value=4.1e+02 Score=25.22 Aligned_cols=43 Identities=16% Similarity=0.229 Sum_probs=32.4
Q ss_pred hHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc--hHHHHHHHcCCCeEEEcc
Q 010684 104 HPFLDLLAKLNDSSNSVNPAVSCIISDGFLP--FTITAAQQLGLPIVLFFT 152 (504)
Q Consensus 104 ~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~--~~~~~A~~lgiP~v~~~~ 152 (504)
..+.++.+.+++. +..+|+++..+. .+-.+|+..|+|.+.+.+
T Consensus 207 ~~l~~l~~~ik~~------~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~ 251 (282)
T cd01017 207 KQLAELVEFVKKS------DVKYIFFEENASSKIAETLAKETGAKLLVLNP 251 (282)
T ss_pred HHHHHHHHHHHHc------CCCEEEEeCCCChHHHHHHHHHcCCcEEEecc
Confidence 3455666666665 889999998766 567789999999887654
No 406
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=30.75 E-value=4.3e+02 Score=24.32 Aligned_cols=29 Identities=14% Similarity=0.104 Sum_probs=24.3
Q ss_pred CeeEEEEcCCcchHHHHHHHcCCCeEEEc
Q 010684 123 AVSCIISDGFLPFTITAAQQLGLPIVLFF 151 (504)
Q Consensus 123 ~~DlvI~D~~~~~~~~~A~~lgiP~v~~~ 151 (504)
+.+.+|+-.+.......|+..|+|++.=.
T Consensus 91 GA~FiVsP~~~~~v~~~~~~~~i~~iPG~ 119 (222)
T PRK07114 91 GANFIVTPLFNPDIAKVCNRRKVPYSPGC 119 (222)
T ss_pred CCCEEECCCCCHHHHHHHHHcCCCEeCCC
Confidence 77889988888888899999999988733
No 407
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=30.63 E-value=89 Score=34.47 Aligned_cols=123 Identities=6% Similarity=-0.075 Sum_probs=0.0
Q ss_pred CCCCCCCCCcEEEEEcCCCc-ccHHHHH-HHHHHHHhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCCCCCCC
Q 010684 2 ESKPKACSKVHAVCIPSPFQ-SHIKAML-KLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPA 79 (504)
Q Consensus 2 ~~~~~~~~~~~il~~~~~~~-GHi~p~l-~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~ 79 (504)
++..+..+++||++++.|+. .=+|+.+ ++++.-..+||+|.-+-. .+.-.+..... .++...+......
T Consensus 381 ~~~~~~~~~~~IaIltsGG~apGmNaairavv~~a~~~g~~v~gi~~-G~~GL~~~~~~--------~l~~~~v~~~~~~ 451 (762)
T cd00764 381 PQPLPEKTNLNIAIVNVGAPAAGMNAAVRSAVRYGLAHGHRPYAIYD-GFEGLAKGQIV--------ELGWIDVGGWTGR 451 (762)
T ss_pred CccCCcccccEEEEEecCCCchhHHHHHHHHHHHHHHCCCEEEEEec-CHHHhcCCCcc--------cCCHHHHHHHHhC
Q ss_pred CCCCCCCcccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEE---EcCCcchHHHHHHH------cCCCeEEE
Q 010684 80 SSDESPTAQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCII---SDGFLPFTITAAQQ------LGLPIVLF 150 (504)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI---~D~~~~~~~~~A~~------lgiP~v~~ 150 (504)
+ ..++..-+..- .+.+..+.+.+++. +.|.+| .|..+..+..+++. ++||+|.+
T Consensus 452 G----------Gt~LGT~R~~~-~~~~~~i~~~l~~~------~Id~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgI 514 (762)
T cd00764 452 G----------GSELGTKRTLP-KKDLETIAYNFQKY------GIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLI 514 (762)
T ss_pred C----------cccccccCCCc-HHHHHHHHHHHHHc------CCCEEEEECChhHHHHHHHHHHHHhhCCCCCccEEEe
No 408
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.50 E-value=98 Score=29.46 Aligned_cols=54 Identities=19% Similarity=0.359 Sum_probs=37.6
Q ss_pred CCCcceEEecCCchhHHHhhhc-CCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCc
Q 010684 379 HPSIGGFLTHCGWNSIVESLCS-GVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE 453 (504)
Q Consensus 379 ~~~~~~~I~HGG~gs~~eal~~-GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~ 453 (504)
.+++ +|+=||-||+..+++. ..|++.+-. -++ |.- ..++.+++.+++.+++++.
T Consensus 52 ~~D~--vi~lGGDGT~L~a~~~~~~PilGIN~--------G~l------GFL-----~~~~~~~~~~~l~~i~~g~ 106 (271)
T PRK01185 52 NADV--IITIGGDGTILRTLQRAKGPILGINM--------GGL------GFL-----TEIEIDEVGSAIKKLIRGE 106 (271)
T ss_pred CCCE--EEEEcCcHHHHHHHHHcCCCEEEEEC--------CCC------ccC-----cccCHHHHHHHHHHHHcCC
Confidence 4666 9999999999999884 456554422 111 211 2467799999999999765
No 409
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=30.49 E-value=98 Score=31.19 Aligned_cols=42 Identities=10% Similarity=0.239 Sum_probs=33.2
Q ss_pred CCCCcEEEEEcC--CCcccHHHHHHHHHHHHhCCCeEEEEeCcc
Q 010684 7 ACSKVHAVCIPS--PFQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (504)
Q Consensus 7 ~~~~~~il~~~~--~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~ 48 (504)
+.++++|+.+.. |+-|-..-.+.||..|+++|++|.++=..+
T Consensus 100 ~g~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~Dp 143 (387)
T TIGR03453 100 GGEHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDP 143 (387)
T ss_pred CCCCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 445667766654 466999999999999999999999986543
No 410
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=30.39 E-value=39 Score=27.14 Aligned_cols=69 Identities=9% Similarity=0.122 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHhhccCcEEEe-------ecchHh---hhcCCCcceEEecC
Q 010684 320 KQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVAS-------WCPQEE---VLKHPSIGGFLTHC 389 (504)
Q Consensus 320 ~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~-------~vpq~~---lL~~~~~~~~I~HG 389 (504)
.+....+++++++.|.+.+.+..... ..... .+..+..+..+ |+.... +.....+ ...|+
T Consensus 11 Geia~r~~ra~r~~Gi~tv~v~s~~d------~~s~~--~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~--~~i~p 80 (110)
T PF00289_consen 11 GEIAVRIIRALRELGIETVAVNSNPD------TVSTH--VDMADEAYFEPPGPSPESYLNIEAIIDIARKEGA--DAIHP 80 (110)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEEGGG------TTGHH--HHHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTE--SEEES
T ss_pred CHHHHHHHHHHHHhCCcceeccCchh------ccccc--ccccccceecCcchhhhhhccHHHHhhHhhhhcC--ccccc
Confidence 34467899999999999998877541 11122 23345555554 555544 3344444 88899
Q ss_pred CchhHHHhh
Q 010684 390 GWNSIVESL 398 (504)
Q Consensus 390 G~gs~~eal 398 (504)
|+|-..|..
T Consensus 81 Gyg~lse~~ 89 (110)
T PF00289_consen 81 GYGFLSENA 89 (110)
T ss_dssp TSSTTTTHH
T ss_pred ccchhHHHH
Confidence 998877764
No 411
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=30.38 E-value=5e+02 Score=25.99 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=26.2
Q ss_pred CcEEEEEc-CCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 010684 10 KVHAVCIP-SPFQSHIKAMLKLAKLLHHKGFHITFVNT 46 (504)
Q Consensus 10 ~~~il~~~-~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~ 46 (504)
.++|+++= .|..|. .+|+.|.++||+|+++..
T Consensus 98 ~~~I~IiGG~GlmG~-----slA~~l~~~G~~V~~~d~ 130 (374)
T PRK11199 98 LRPVVIVGGKGQLGR-----LFAKMLTLSGYQVRILEQ 130 (374)
T ss_pred cceEEEEcCCChhhH-----HHHHHHHHCCCeEEEeCC
Confidence 46888886 677775 589999999999998875
No 412
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=30.33 E-value=94 Score=27.36 Aligned_cols=41 Identities=7% Similarity=-0.066 Sum_probs=28.9
Q ss_pred EEEEcCCCcccHHH-HHHHHHHHHh-CCCeEEEEeCccchHHHH
Q 010684 13 AVCIPSPFQSHIKA-MLKLAKLLHH-KGFHITFVNTEFNHRRLL 54 (504)
Q Consensus 13 il~~~~~~~GHi~p-~l~LA~~L~~-~Gh~Vt~~~~~~~~~~~~ 54 (504)
|+..-.|+ ||... .+.+.+.|++ +||+|.++.++.-.+.+.
T Consensus 2 i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~ 44 (174)
T TIGR02699 2 IAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVK 44 (174)
T ss_pred EEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHH
Confidence 34444444 77766 8899999984 599999999876654443
No 413
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=30.27 E-value=1.1e+02 Score=30.49 Aligned_cols=35 Identities=17% Similarity=0.139 Sum_probs=26.1
Q ss_pred CCCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 010684 8 CSKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNT 46 (504)
Q Consensus 8 ~~~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~ 46 (504)
..+|+|++. |+.|.+ -..|++.|.++||+|+.+.-
T Consensus 19 ~~~~~IlVt--GgtGfI--G~~l~~~L~~~G~~V~~v~r 53 (370)
T PLN02695 19 SEKLRICIT--GAGGFI--ASHIARRLKAEGHYIIASDW 53 (370)
T ss_pred CCCCEEEEE--CCccHH--HHHHHHHHHhCCCEEEEEEe
Confidence 357787765 555654 46789999999999998863
No 414
>PRK07773 replicative DNA helicase; Validated
Probab=30.06 E-value=2.5e+02 Score=31.87 Aligned_cols=45 Identities=11% Similarity=0.149 Sum_probs=36.2
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHh-CCCeEEEEeCccchHHHHhh
Q 010684 12 HAVCIPSPFQSHIKAMLKLAKLLHH-KGFHITFVNTEFNHRRLLKA 56 (504)
Q Consensus 12 ~il~~~~~~~GHi~p~l~LA~~L~~-~Gh~Vt~~~~~~~~~~~~~~ 56 (504)
=|++...|+.|-..-.+.+|...+. .|..|.|++-+...+.+...
T Consensus 219 livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~~R 264 (886)
T PRK07773 219 LIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLVMR 264 (886)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHH
Confidence 4677778899999999999999875 48999999988776655443
No 415
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=29.92 E-value=3.5e+02 Score=28.82 Aligned_cols=25 Identities=12% Similarity=0.204 Sum_probs=21.0
Q ss_pred eEEecCCch------hHHHhhhcCCcEEecC
Q 010684 384 GFLTHCGWN------SIVESLCSGVPMICWP 408 (504)
Q Consensus 384 ~~I~HGG~g------s~~eal~~GvP~v~~P 408 (504)
++++|.|-| .+.+|...++|||++-
T Consensus 71 v~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~ 101 (572)
T PRK06456 71 VCTATSGPGTTNLVTGLITAYWDSSPVIAIT 101 (572)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 388888844 7799999999999995
No 416
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=29.69 E-value=4.2e+02 Score=23.84 Aligned_cols=32 Identities=16% Similarity=0.053 Sum_probs=21.2
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCC--CeEEEEe
Q 010684 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKG--FHITFVN 45 (504)
Q Consensus 11 ~~il~~~~~~~GHi~p~l~LA~~L~~~G--h~Vt~~~ 45 (504)
|||+++.++.-+=+. ++.+.+.+.+ ++|.++.
T Consensus 2 ~ki~vl~sg~gs~~~---~ll~~~~~~~~~~~I~~vv 35 (200)
T PRK05647 2 KRIVVLASGNGSNLQ---AIIDACAAGQLPAEIVAVI 35 (200)
T ss_pred ceEEEEEcCCChhHH---HHHHHHHcCCCCcEEEEEE
Confidence 689999987644333 5566676654 7777653
No 417
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.68 E-value=1.2e+02 Score=28.70 Aligned_cols=55 Identities=11% Similarity=0.217 Sum_probs=37.3
Q ss_pred CCCcceEEecCCchhHHHhhhc-----CCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCc
Q 010684 379 HPSIGGFLTHCGWNSIVESLCS-----GVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE 453 (504)
Q Consensus 379 ~~~~~~~I~HGG~gs~~eal~~-----GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~ 453 (504)
.+++ +|+=||-||+..+++. .+|++.+-.. - .+|.- ..++.+++.+++.++++++
T Consensus 39 ~~D~--vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~-------G------~lGFL-----~~~~~~~~~~~l~~i~~g~ 98 (264)
T PRK03501 39 NANI--IVSIGGDGTFLQAVRKTGFREDCLYAGISTK-------D------QLGFY-----CDFHIDDLDKMIQAITKEE 98 (264)
T ss_pred CccE--EEEECCcHHHHHHHHHhcccCCCeEEeEecC-------C------CCeEc-----ccCCHHHHHHHHHHHHcCC
Confidence 3566 9999999999999874 4565444331 1 12222 2466788999999988765
No 418
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=29.50 E-value=3.1e+02 Score=29.21 Aligned_cols=28 Identities=14% Similarity=0.331 Sum_probs=22.6
Q ss_pred CCCcceEEecCCch------hHHHhhhcCCcEEecC
Q 010684 379 HPSIGGFLTHCGWN------SIVESLCSGVPMICWP 408 (504)
Q Consensus 379 ~~~~~~~I~HGG~g------s~~eal~~GvP~v~~P 408 (504)
++.+ +++|.|-| .+.+|.+.++|+|++-
T Consensus 70 ~~~v--~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 103 (561)
T PRK06048 70 KVGV--CVATSGPGATNLVTGIATAYMDSVPIVALT 103 (561)
T ss_pred CCeE--EEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 3455 88888744 7899999999999984
No 419
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=29.47 E-value=2.7e+02 Score=25.85 Aligned_cols=44 Identities=9% Similarity=0.037 Sum_probs=30.3
Q ss_pred hhhccccCCCCCeeEEEecCCccccCHHHHHHHHHHHHhCCCCEEE
Q 010684 294 ECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLW 339 (504)
Q Consensus 294 ~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~ 339 (504)
.+.+|+.. .+.++||-.-|......+....+.++++++|..+..
T Consensus 23 ~~~~~~~~--~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~ 66 (233)
T PRK05282 23 LIAELLAG--RRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTG 66 (233)
T ss_pred HHHHHHcC--CCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEE
Confidence 34456653 456999977665544556677888999999887553
No 420
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=29.37 E-value=3.5e+02 Score=25.20 Aligned_cols=104 Identities=13% Similarity=0.065 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhCC-CeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCCCCcccHHHHHHHHHHhhc
Q 010684 24 IKAMLKLAKLLHHKG-FHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTAQDAYSLGENIINNVL 102 (504)
Q Consensus 24 i~p~l~LA~~L~~~G-h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (504)
++|..++..+|+.-| .+|.++|| |.+.+.+...... . ..||++..+.. +... +. .+ +.+.-
T Consensus 105 tt~~~A~~~AL~alg~~RIalvTP--Y~~~v~~~~~~~l-~-~~G~eV~~~~~-~~~~----~~-------~~-ia~i~- 166 (239)
T TIGR02990 105 VTPSSAAVDGLAALGVRRISLLTP--YTPETSRPMAQYF-A-VRGFEIVNFTC-LGLT----DD-------RE-MARIS- 166 (239)
T ss_pred eCHHHHHHHHHHHcCCCEEEEECC--CcHHHHHHHHHHH-H-hCCcEEeeeec-cCCC----CC-------ce-eeecC-
Confidence 346777888888887 57777776 2222211110000 0 01677665532 2111 00 00 11111
Q ss_pred chHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHH----HHHcCCCeEEEc
Q 010684 103 LHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITA----AQQLGLPIVLFF 151 (504)
Q Consensus 103 ~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~----A~~lgiP~v~~~ 151 (504)
.+.+.+.+.++... .+|.|+.......+..+ -+.+|+|++...
T Consensus 167 p~~i~~~~~~~~~~------~aDAifisCTnLrt~~vi~~lE~~lGkPVlsSN 213 (239)
T TIGR02990 167 PDCIVEAALAAFDP------DADALFLSCTALRAATCAQRIEQAIGKPVVTSN 213 (239)
T ss_pred HHHHHHHHHHhcCC------CCCEEEEeCCCchhHHHHHHHHHHHCCCEEEHH
Confidence 23444455544333 77888866544444433 466799988743
No 421
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=29.32 E-value=4.5e+02 Score=24.94 Aligned_cols=104 Identities=11% Similarity=0.072 Sum_probs=55.1
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCCCCcccHHH
Q 010684 13 AVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTAQDAYS 92 (504)
Q Consensus 13 il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~ 92 (504)
|++.=.|+.|-..-...|++.|.+.|.+|.++..+... +... . + .+. .
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~--~~~~----------~---------y------~~~-~---- 51 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG--IDRN----------D---------Y------ADS-K---- 51 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH---TTS----------S---------S--------G-G----
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc--cchh----------h---------h------hch-h----
Confidence 56666789999999999999999999999988743222 1100 0 0 000 0
Q ss_pred HHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc------hHHHHHHHcCCCeEEEccccHHHHHh
Q 010684 93 LGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLP------FTITAAQQLGLPIVLFFTISACSFMG 160 (504)
Q Consensus 93 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~------~~~~~A~~lgiP~v~~~~~~~~~~~~ 160 (504)
.-+..+... ...+...+ . +-++||+|..++ -..-+|+..+.++..++.........
T Consensus 52 ~Ek~~R~~l-~s~v~r~l---s--------~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~ 113 (270)
T PF08433_consen 52 KEKEARGSL-KSAVERAL---S--------KDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCL 113 (270)
T ss_dssp GHHHHHHHH-HHHHHHHH---T--------T-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHH
T ss_pred hhHHHHHHH-HHHHHHhh---c--------cCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHH
Confidence 012222212 33333332 2 238999999876 46678999999999887766554443
No 422
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=29.19 E-value=97 Score=30.97 Aligned_cols=33 Identities=12% Similarity=0.064 Sum_probs=18.4
Q ss_pred CeeEEEecCCccccCHHHHHHHHHHHHhCCCCEEE
Q 010684 305 KSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLW 339 (504)
Q Consensus 305 ~~~V~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~ 339 (504)
+.+++|+-++... ......+...+++.+..+.+
T Consensus 24 ~~~lvv~~~~~~~--~~~~~~v~~~L~~~~~~~~~ 56 (370)
T cd08551 24 RKALIVTDPGLVK--TGVLDKVIDSLKEAGIEVVI 56 (370)
T ss_pred CeEEEEeCcchhh--CccHHHHHHHHHHcCCeEEE
Confidence 4466665433322 34456677777777766553
No 423
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=29.07 E-value=96 Score=25.25 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=29.3
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 010684 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNT 46 (504)
Q Consensus 10 ~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~ 46 (504)
..+|+++++|+. +...+..++.|.+.|.+++++..
T Consensus 9 g~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~~ 43 (124)
T PF02780_consen 9 GADITIIAYGSM--VEEALEAAEELEEEGIKAGVIDL 43 (124)
T ss_dssp SSSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEee
Confidence 568899999887 46679999999999999998753
No 424
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=29.05 E-value=3.5e+02 Score=22.69 Aligned_cols=27 Identities=11% Similarity=0.164 Sum_probs=20.4
Q ss_pred CeeEEEEcCCcchHHHHHHHcCCCeEEE
Q 010684 123 AVSCIISDGFLPFTITAAQQLGLPIVLF 150 (504)
Q Consensus 123 ~~DlvI~D~~~~~~~~~A~~lgiP~v~~ 150 (504)
+-+++++|... ..+..|+..|++.|.+
T Consensus 150 p~~~~~vgD~~-~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 150 PEEILFVGDSP-SDVEAAKEAGIKTIWV 176 (176)
T ss_dssp GGGEEEEESSH-HHHHHHHHTTSEEEEE
T ss_pred cceEEEEeCCH-HHHHHHHHcCCeEEeC
Confidence 33566666545 8999999999999864
No 425
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=29.03 E-value=1.1e+02 Score=27.17 Aligned_cols=30 Identities=23% Similarity=0.329 Sum_probs=23.4
Q ss_pred eEEEEcCCc-chHHHHHHHcCCCeEEEcccc
Q 010684 125 SCIISDGFL-PFTITAAQQLGLPIVLFFTIS 154 (504)
Q Consensus 125 DlvI~D~~~-~~~~~~A~~lgiP~v~~~~~~ 154 (504)
.++|..++. +.+..+|+++|+|.|.+.|+.
T Consensus 61 ~~liGSSlGG~~A~~La~~~~~~avLiNPav 91 (187)
T PF05728_consen 61 VVLIGSSLGGFYATYLAERYGLPAVLINPAV 91 (187)
T ss_pred eEEEEEChHHHHHHHHHHHhCCCEEEEcCCC
Confidence 477777663 378889999999999987654
No 426
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=29.00 E-value=3.6e+02 Score=22.81 Aligned_cols=35 Identities=11% Similarity=0.097 Sum_probs=29.8
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCc
Q 010684 13 AVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (504)
Q Consensus 13 il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~ 47 (504)
|.+.-.++.|-...+..++..|.++|++|.++...
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D 36 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAID 36 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 45666678899999999999999999999998755
No 427
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=28.94 E-value=1.1e+02 Score=23.07 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=28.0
Q ss_pred cEEEEEcCCCc--ccHHHHHHHHHHHHhCCCeEEEEe
Q 010684 11 VHAVCIPSPFQ--SHIKAMLKLAKLLHHKGFHITFVN 45 (504)
Q Consensus 11 ~~il~~~~~~~--GHi~p~l~LA~~L~~~Gh~Vt~~~ 45 (504)
-+|+++|.... .+..-...++..|...|..|.+-.
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~ 38 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDD 38 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 47888887653 566778999999999999998754
No 428
>COG1422 Predicted membrane protein [Function unknown]
Probab=28.93 E-value=2e+02 Score=25.82 Aligned_cols=80 Identities=16% Similarity=0.228 Sum_probs=48.7
Q ss_pred hHHHhhhcCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCchH-HHHHHHHHHHHHHHHH
Q 010684 393 SIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKG-KQMRNKAMEWKGLAEE 471 (504)
Q Consensus 393 s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~~~-~~~~~~a~~l~~~~~~ 471 (504)
|+.++++-+.-.+..|+..=++..-.-++- .+...-...-+++.+.|-|. +++++.++++++++++
T Consensus 24 ~~~~~i~~~ln~~f~P~i~~~~p~lvilV~-------------avi~gl~~~i~~~~liD~ekm~~~qk~m~efq~e~~e 90 (201)
T COG1422 24 SIRDGIGGALNVVFGPLLSPLPPHLVILVA-------------AVITGLYITILQKLLIDQEKMKELQKMMKEFQKEFRE 90 (201)
T ss_pred HHHHHHHHHHHHHHhhhccccccHHHHHHH-------------HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666654433332222211 22334556677788888766 8999999999999998
Q ss_pred HhCCCCChHHHHHHHH
Q 010684 472 AAAPHGSSSLNLDKLV 487 (504)
Q Consensus 472 ~~~~~g~~~~~~~~~~ 487 (504)
+.++|- ...++++-
T Consensus 91 A~~~~d--~~~lkkLq 104 (201)
T COG1422 91 AQESGD--MKKLKKLQ 104 (201)
T ss_pred HHHhCC--HHHHHHHH
Confidence 754433 34444443
No 429
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=28.92 E-value=4.3e+02 Score=23.75 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=24.6
Q ss_pred CeeEEEEcCCcchHHHHHHHcCCCeEEEcccc
Q 010684 123 AVSCIISDGFLPFTITAAQQLGLPIVLFFTIS 154 (504)
Q Consensus 123 ~~DlvI~D~~~~~~~~~A~~lgiP~v~~~~~~ 154 (504)
+.+.+|+-.+.......|+..|+|++.=..++
T Consensus 80 GA~FivSP~~~~~v~~~~~~~~i~~iPG~~Tp 111 (196)
T PF01081_consen 80 GAQFIVSPGFDPEVIEYAREYGIPYIPGVMTP 111 (196)
T ss_dssp T-SEEEESS--HHHHHHHHHHTSEEEEEESSH
T ss_pred CCCEEECCCCCHHHHHHHHHcCCcccCCcCCH
Confidence 78999999888899999999999999854444
No 430
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=28.77 E-value=3.6e+02 Score=28.81 Aligned_cols=27 Identities=22% Similarity=0.433 Sum_probs=22.1
Q ss_pred cceEEecCCch------hHHHhhhcCCcEEecC
Q 010684 382 IGGFLTHCGWN------SIVESLCSGVPMICWP 408 (504)
Q Consensus 382 ~~~~I~HGG~g------s~~eal~~GvP~v~~P 408 (504)
.+++++|.|-| .+++|...++|+|++.
T Consensus 68 ~gv~~~t~GpG~~N~l~~i~~A~~~~~Pvlvi~ 100 (574)
T PRK06882 68 VGCVLVTSGPGATNAITGIATAYTDSVPLVILS 100 (574)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 34488888855 6889999999999985
No 431
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=28.63 E-value=1.2e+02 Score=29.39 Aligned_cols=74 Identities=11% Similarity=0.085 Sum_probs=44.4
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHhhccCcEEEeecchHhhhcCCCcceEEecCCchhHHH
Q 010684 317 FMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVE 396 (504)
Q Consensus 317 ~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~I~HGG~gs~~e 396 (504)
..+.+....+.+++.+-..+.||...++.. -.++.++++...+-.+|.+ ||=..-..+++-
T Consensus 49 g~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g-----------------~~rlL~~lD~~~i~~~PK~--fiGySDiTaL~~ 109 (308)
T cd07062 49 ASPEERAEELMAAFADPSIKAIIPTIGGDD-----------------SNELLPYLDYELIKKNPKI--FIGYSDITALHL 109 (308)
T ss_pred CCHHHHHHHHHHHhcCCCCCEEEECCcccC-----------------HhhhhhhcCHHHHhhCCCE--EEeccHHHHHHH
Confidence 345566888999999999999999987631 1233444444444445544 555555555555
Q ss_pred hhh--cCCcEEecCC
Q 010684 397 SLC--SGVPMICWPF 409 (504)
Q Consensus 397 al~--~GvP~v~~P~ 409 (504)
+++ .|.+.+--|.
T Consensus 110 al~~~~g~~t~hGp~ 124 (308)
T cd07062 110 AIYKKTGLVTYYGPN 124 (308)
T ss_pred HHHHhcCCeEEECcc
Confidence 552 2454444443
No 432
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.59 E-value=48 Score=32.22 Aligned_cols=29 Identities=7% Similarity=0.162 Sum_probs=23.8
Q ss_pred CCCcceEEecCCchhHHHhhhc----CCcEEecCC
Q 010684 379 HPSIGGFLTHCGWNSIVESLCS----GVPMICWPF 409 (504)
Q Consensus 379 ~~~~~~~I~HGG~gs~~eal~~----GvP~v~~P~ 409 (504)
.+++ +|.-||-||+.++++. ++|++++..
T Consensus 57 ~~d~--vi~~GGDGT~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 57 LIDL--AIVLGGDGTVLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred CcCE--EEEECCcHHHHHHHHHhccCCCCEEEEec
Confidence 4666 9999999999999864 778877765
No 433
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=28.47 E-value=74 Score=32.49 Aligned_cols=44 Identities=18% Similarity=0.287 Sum_probs=29.7
Q ss_pred CCCCCCCCCCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccc
Q 010684 1 MESKPKACSKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFN 49 (504)
Q Consensus 1 ~~~~~~~~~~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~ 49 (504)
|.|-..-.++.||+++=.|.-| +..|+.|.+.+++||++.+..+
T Consensus 1 ~~~~~~~~~~~~vVIvGgG~aG-----l~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 1 MRSRTARLKKPNVVVLGTGWAG-----AYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred CCCcccCCCCCeEEEECCCHHH-----HHHHHHhCcCCCeEEEEcCCCC
Confidence 4444334557788887665444 4467888777899999986554
No 434
>PRK13055 putative lipid kinase; Reviewed
Probab=28.43 E-value=1.6e+02 Score=29.04 Aligned_cols=28 Identities=18% Similarity=0.141 Sum_probs=23.0
Q ss_pred CCcceEEecCCchhHHHhhhc------CCcEEecCC
Q 010684 380 PSIGGFLTHCGWNSIVESLCS------GVPMICWPF 409 (504)
Q Consensus 380 ~~~~~~I~HGG~gs~~eal~~------GvP~v~~P~ 409 (504)
.++ +|--||-||+.|++.. .+|+-++|.
T Consensus 60 ~d~--vvv~GGDGTl~evvngl~~~~~~~~LgiiP~ 93 (334)
T PRK13055 60 FDL--IIAAGGDGTINEVVNGIAPLEKRPKMAIIPA 93 (334)
T ss_pred CCE--EEEECCCCHHHHHHHHHhhcCCCCcEEEECC
Confidence 455 9999999999999754 478889996
No 435
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=28.41 E-value=1.2e+02 Score=29.60 Aligned_cols=96 Identities=13% Similarity=0.031 Sum_probs=0.0
Q ss_pred hhhhccccCCCCCeeEEEecCCccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHhhccCcEEEeecc
Q 010684 293 TECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCP 372 (504)
Q Consensus 293 ~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vp 372 (504)
+++.+++.....++++.|+-++... .....+.+.+++. ..+.+..... +|-.+..-..
T Consensus 12 ~~l~~~~~~~g~~~~liv~~~~~~~---~~~~~v~~~l~~~-~~~~~~~~~~------------------~~p~~~~v~~ 69 (332)
T cd07766 12 EKIGEEIKRGGFDRALVVSDEGVVK---GVGEKVADSLKKL-IAVHIFDGVG------------------PNPTFEEVKE 69 (332)
T ss_pred HHHHHHHHhcCCCeEEEEeCCchhh---hHHHHHHHHHHhc-CcEEEeCCcC------------------CCcCHHHHHH
Q ss_pred hHhhhcCCCcceEEecCCchhHHHhhhc-------CCcEEecCCCC
Q 010684 373 QEEVLKHPSIGGFLTHCGWNSIVESLCS-------GVPMICWPFTG 411 (504)
Q Consensus 373 q~~lL~~~~~~~~I~HGG~gs~~eal~~-------GvP~v~~P~~~ 411 (504)
-.+.+...+..++|-=|| ||+.....+ |+|++.+|...
T Consensus 70 ~~~~~~~~~~d~IIaiGG-Gs~~D~aK~ia~~~~~~~p~i~iPTt~ 114 (332)
T cd07766 70 AVERARAAEVDAVIAVGG-GSTLDTAKAVAALLNRGLPIIIVPTTA 114 (332)
T ss_pred HHHHHHhcCcCEEEEeCC-chHHHHHHHHHHHhcCCCCEEEEeCCC
No 436
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=28.36 E-value=60 Score=33.17 Aligned_cols=37 Identities=16% Similarity=0.075 Sum_probs=27.6
Q ss_pred HHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEc
Q 010684 106 FLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFF 151 (504)
Q Consensus 106 ~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~lgiP~v~~~ 151 (504)
+.++.+.+++. +||++|.... ...+|+++|||++.+.
T Consensus 358 ~~e~~~~i~~~------~pDliig~~~---~~~~a~k~giP~~~~~ 394 (421)
T cd01976 358 HYELEEFVKRL------KPDLIGSGIK---EKYVFQKMGIPFRQMH 394 (421)
T ss_pred HHHHHHHHHHh------CCCEEEecCc---chhhhhhcCCCeEeCC
Confidence 34444555544 9999999974 6678999999998764
No 437
>PRK07586 hypothetical protein; Validated
Probab=28.34 E-value=3.4e+02 Score=28.44 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=19.5
Q ss_pred EEecCCch------hHHHhhhcCCcEEecCC
Q 010684 385 FLTHCGWN------SIVESLCSGVPMICWPF 409 (504)
Q Consensus 385 ~I~HGG~g------s~~eal~~GvP~v~~P~ 409 (504)
++.|.|-| .+.+|-+.++|||++.-
T Consensus 68 ~~~t~GPG~~N~~~gl~~A~~~~~Pvl~i~G 98 (514)
T PRK07586 68 TLLHLGPGLANGLANLHNARRARTPIVNIVG 98 (514)
T ss_pred EEecccHHHHHHHHHHHHHHhcCCCEEEEec
Confidence 77787755 44589999999999863
No 438
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=28.24 E-value=1.3e+02 Score=30.44 Aligned_cols=45 Identities=20% Similarity=0.090 Sum_probs=35.4
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHH
Q 010684 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLL 54 (504)
Q Consensus 9 ~~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~ 54 (504)
+++||++.-.|+-+ .+=...+.+.|.+.|++|.++.++.-...+.
T Consensus 5 ~~k~IllgvTGsia-a~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~ 49 (399)
T PRK05579 5 AGKRIVLGVSGGIA-AYKALELVRRLRKAGADVRVVMTEAAKKFVT 49 (399)
T ss_pred CCCeEEEEEeCHHH-HHHHHHHHHHHHhCCCEEEEEECHhHHHHHh
Confidence 46789998888774 4467889999999999999998876554443
No 439
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=28.00 E-value=61 Score=33.48 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=25.0
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCcc
Q 010684 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (504)
Q Consensus 11 ~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~ 48 (504)
|||+++=-|- ..++-|.+|+++||+||++-...
T Consensus 1 ~rVai~GaG~-----AgL~~a~~La~~g~~vt~~ea~~ 33 (485)
T COG3349 1 MRVAIAGAGL-----AGLAAAYELADAGYDVTLYEARD 33 (485)
T ss_pred CeEEEEcccH-----HHHHHHHHHHhCCCceEEEeccC
Confidence 4666665543 45889999999999999986544
No 440
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=27.88 E-value=3.6e+02 Score=26.64 Aligned_cols=45 Identities=22% Similarity=0.289 Sum_probs=28.8
Q ss_pred hHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc---hHHHHHHHcCCCeEEEcccc
Q 010684 104 HPFLDLLAKLNDSSNSVNPAVSCIISDGFLP---FTITAAQQLGLPIVLFFTIS 154 (504)
Q Consensus 104 ~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~---~~~~~A~~lgiP~v~~~~~~ 154 (504)
+.++++.+..++. ++|+||+=.-.. .+-.+|..+++|++.+-++.
T Consensus 63 ~~v~~~~~~~~~~------~~D~iIavGGGs~~D~aK~ia~~~~~p~i~VPTT~ 110 (347)
T cd08172 63 ENIERLAAQAKEN------GADVIIGIGGGKVLDTAKAVADRLGVPVITVPTLA 110 (347)
T ss_pred HHHHHHHHHHHhc------CCCEEEEeCCcHHHHHHHHHHHHhCCCEEEecCcc
Confidence 3444555555544 889999554322 45666667799999876654
No 441
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=27.79 E-value=1.4e+02 Score=24.70 Aligned_cols=42 Identities=12% Similarity=0.052 Sum_probs=34.6
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHH
Q 010684 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRL 53 (504)
Q Consensus 12 ~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~ 53 (504)
+|++.+..+.+|-.----++..|...|++|......-..+.+
T Consensus 1 ~vvigtv~gD~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~ 42 (128)
T cd02072 1 TIVLGVIGSDCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEF 42 (128)
T ss_pred CEEEEEeCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 578899999999999999999999999999988765443333
No 442
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=27.75 E-value=4.9e+02 Score=26.27 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=28.6
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCC-CeEEEEeCc-cchHHHHhh
Q 010684 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKG-FHITFVNTE-FNHRRLLKA 56 (504)
Q Consensus 11 ~~il~~~~~~~GHi~p~l~LA~~L~~~G-h~Vt~~~~~-~~~~~~~~~ 56 (504)
++|+++=.|.-|+ .+|..|+++| ++|+++.-. ...+++...
T Consensus 2 ~~ilviGaG~Vg~-----~va~~la~~~d~~V~iAdRs~~~~~~i~~~ 44 (389)
T COG1748 2 MKILVIGAGGVGS-----VVAHKLAQNGDGEVTIADRSKEKCARIAEL 44 (389)
T ss_pred CcEEEECCchhHH-----HHHHHHHhCCCceEEEEeCCHHHHHHHHhh
Confidence 5777776655554 6799999999 999999844 444555433
No 443
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=27.62 E-value=83 Score=23.18 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhCCCeEEEEeCc
Q 010684 26 AMLKLAKLLHHKGFHITFVNTE 47 (504)
Q Consensus 26 p~l~LA~~L~~~Gh~Vt~~~~~ 47 (504)
--+.+|..|++.|.+||++...
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~ 31 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERS 31 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHHHhCcEEEEEecc
Confidence 4578999999999999999854
No 444
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.62 E-value=2.1e+02 Score=24.81 Aligned_cols=96 Identities=16% Similarity=0.272 Sum_probs=63.8
Q ss_pred cchHhhhc-CCCcceEEecCC---chhHHHhhhcCCcEEecCC--CCCcchhhhhhhhhcceeEEecCCCCCccHHHHHH
Q 010684 371 CPQEEVLK-HPSIGGFLTHCG---WNSIVESLCSGVPMICWPF--TGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEK 444 (504)
Q Consensus 371 vpq~~lL~-~~~~~~~I~HGG---~gs~~eal~~GvP~v~~P~--~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ 444 (504)
-+|..|+. ||++.+-+--.| .-|+.|.-.+|.=.+. |. ..=+..|+++. +++|.-..+-- +..|.+.|..
T Consensus 63 ~~rl~liraHPdLAgk~a~a~elta~S~~EQasAGLd~Ls-~~E~a~f~~LN~aY~-~rFgfPfI~aV--kg~~k~~Il~ 138 (176)
T COG3195 63 EERLALIRAHPDLAGKAAIAGELTAESTSEQASAGLDRLS-PEEFARFTELNAAYV-ERFGFPFIIAV--KGNTKDTILA 138 (176)
T ss_pred HHHHHHHHhChhhHHHHHHHHHhhhhhHHHHHhcCcccCC-HHHHHHHHHHHHHHH-HhcCCceEEee--cCCCHHHHHH
Confidence 35555444 888732222222 3477787888765432 11 11234688999 89999877765 6778999999
Q ss_pred HHHHHhcCchHHHHHHHHHHHHHHHH
Q 010684 445 LVREMMEGEKGKQMRNKAMEWKGLAE 470 (504)
Q Consensus 445 ai~~vl~~~~~~~~~~~a~~l~~~~~ 470 (504)
+..+=|+|.+.+.++..+.++.+...
T Consensus 139 a~~~Rl~n~~e~E~~tAl~eI~rIA~ 164 (176)
T COG3195 139 AFERRLDNDREQEFATALAEIERIAL 164 (176)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 99999999877777777777766543
No 445
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=27.50 E-value=48 Score=27.16 Aligned_cols=36 Identities=17% Similarity=0.128 Sum_probs=26.1
Q ss_pred eEEecCCchhHHHhhhc----C-----CcEEecCCCCCcchhhhhh
Q 010684 384 GFLTHCGWNSIVESLCS----G-----VPMICWPFTGDQPTNGRYV 420 (504)
Q Consensus 384 ~~I~HGG~gs~~eal~~----G-----vP~v~~P~~~DQ~~na~rv 420 (504)
.+|.-||-||+.|++.. . +|+.++|..- -.++|+.+
T Consensus 52 ~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP~GT-gNdfar~l 96 (124)
T smart00046 52 RVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLPLGT-GNDLARSL 96 (124)
T ss_pred EEEEEccccHHHHHHHHHHhcccccCCCcEEEeCCCC-hhHHHHHc
Confidence 39999999999999653 3 6889999843 44455443
No 446
>PRK08266 hypothetical protein; Provisional
Probab=27.39 E-value=4e+02 Score=28.14 Aligned_cols=25 Identities=12% Similarity=0.239 Sum_probs=21.3
Q ss_pred eEEecCCch------hHHHhhhcCCcEEecC
Q 010684 384 GFLTHCGWN------SIVESLCSGVPMICWP 408 (504)
Q Consensus 384 ~~I~HGG~g------s~~eal~~GvP~v~~P 408 (504)
++++|.|-| .+.||-..++|+|++-
T Consensus 71 v~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~ 101 (542)
T PRK08266 71 VCSVVPGPGVLNAGAALLTAYGCNSPVLCLT 101 (542)
T ss_pred EEEECCCCcHHHHHHHHHHHHhhCCCEEEEe
Confidence 388888855 8899999999999984
No 447
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=27.35 E-value=4.8e+02 Score=23.75 Aligned_cols=91 Identities=13% Similarity=0.200 Sum_probs=51.3
Q ss_pred CcccHHHHH---HHHHHHHhCCCeEEEEeCccch-HHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCCCCcccHHHHHH
Q 010684 20 FQSHIKAML---KLAKLLHHKGFHITFVNTEFNH-RRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTAQDAYSLGE 95 (504)
Q Consensus 20 ~~GHi~p~l---~LA~~L~~~Gh~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~ 95 (504)
-.||+.+++ .+++-|..+|++|.++++-... ..+.... . ....+...+.+
T Consensus 35 HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A----------~----------------~~g~~p~e~~~ 88 (213)
T cd00672 35 HIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRA----------R----------------EEGLSWKEVAD 88 (213)
T ss_pred ccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHH----------H----------------HcCCCHHHHHH
Confidence 349998754 4677777789999999854322 2222220 0 00112233444
Q ss_pred HHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCe
Q 010684 96 NIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPI 147 (504)
Q Consensus 96 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~~A~~lgiP~ 147 (504)
.+ ...+.+.++.+.-. .||..+-.=+.-|+.++.+.||-|+
T Consensus 89 ~~-----~~~f~~~~~~l~i~------~~d~~~rtWh~ec~am~~~~lg~~~ 129 (213)
T cd00672 89 YY-----TKEFFEDMKALNVL------PPDVVPRVWHIECSAMAMKYLGETF 129 (213)
T ss_pred HH-----HHHHHHHHHHcCCC------CCCcceeehhHHHHHHHHHHcCCCc
Confidence 44 44566666666422 4466654422338888888888665
No 448
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=27.30 E-value=1e+02 Score=28.50 Aligned_cols=42 Identities=5% Similarity=-0.024 Sum_probs=30.7
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCccchHHH
Q 010684 12 HAVCIPSPFQSHIKAMLKLAKLLHHK--GFHITFVNTEFNHRRL 53 (504)
Q Consensus 12 ~il~~~~~~~GHi~p~l~LA~~L~~~--Gh~Vt~~~~~~~~~~~ 53 (504)
||++.-.|+.+=++=.+.+.+.|+++ ||+|.++.++.-...+
T Consensus 1 ~i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i 44 (234)
T TIGR02700 1 RIGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVV 44 (234)
T ss_pred CeEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHH
Confidence 35555555544557899999999999 9999999886654433
No 449
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=27.29 E-value=1.1e+02 Score=30.72 Aligned_cols=33 Identities=9% Similarity=-0.042 Sum_probs=19.1
Q ss_pred CeeEEEecCCccccCHHHHHHHHHHHHhCCCCEEE
Q 010684 305 KSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLW 339 (504)
Q Consensus 305 ~~~V~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~ 339 (504)
+++++|+-++.. ....+..+.+.|+..+..+.+
T Consensus 24 ~r~livt~~~~~--~~g~~~~v~~~L~~~gi~~~~ 56 (375)
T cd08194 24 KRPLIVTDKVMV--KLGLVDKLTDSLKKEGIESAI 56 (375)
T ss_pred CeEEEEcCcchh--hcchHHHHHHHHHHCCCeEEE
Confidence 456666643332 223556677778777766543
No 450
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=27.18 E-value=66 Score=31.22 Aligned_cols=33 Identities=12% Similarity=0.065 Sum_probs=27.4
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCc
Q 010684 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (504)
Q Consensus 10 ~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~ 47 (504)
+|||.|+=.|..| ..+|+.|.++||+|+++...
T Consensus 4 ~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWG-----STLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 6799999777666 47899999999999988643
No 451
>PRK04328 hypothetical protein; Provisional
Probab=27.11 E-value=4.4e+02 Score=24.52 Aligned_cols=45 Identities=9% Similarity=-0.128 Sum_probs=33.2
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHHh
Q 010684 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLK 55 (504)
Q Consensus 11 ~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~ 55 (504)
.-+++.-.|+.|-..-.+.++..-.++|+.+.|++.+...+.+.+
T Consensus 24 s~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~ 68 (249)
T PRK04328 24 NVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRR 68 (249)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHH
Confidence 345555566779988888888877788999999998765554443
No 452
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=26.75 E-value=2.3e+02 Score=26.42 Aligned_cols=44 Identities=16% Similarity=0.419 Sum_probs=30.0
Q ss_pred hHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc--hHHHHHHHcCCCeEEEccc
Q 010684 104 HPFLDLLAKLNDSSNSVNPAVSCIISDGFLP--FTITAAQQLGLPIVLFFTI 153 (504)
Q Consensus 104 ~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~--~~~~~A~~lgiP~v~~~~~ 153 (504)
..+.++.+.+++. +..+|+++.... .+-.+|+..|+|.+.+.+.
T Consensus 186 ~~l~~l~~~ik~~------~v~~i~~e~~~~~~~~~~la~~~g~~vv~ld~l 231 (256)
T PF01297_consen 186 KDLAELIKLIKEN------KVKCIFTEPQFSSKLAEALAKETGVKVVYLDPL 231 (256)
T ss_dssp HHHHHHHHHHHHT------T-SEEEEETTS-THHHHHHHHCCT-EEEESSTT
T ss_pred HHHHHHHHHhhhc------CCcEEEecCCCChHHHHHHHHHcCCcEEEeCCC
Confidence 3445555556655 889999998666 4678899999999886554
No 453
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=26.60 E-value=1.1e+02 Score=28.67 Aligned_cols=35 Identities=14% Similarity=0.060 Sum_probs=28.1
Q ss_pred EEEEEc--CCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 010684 12 HAVCIP--SPFQSHIKAMLKLAKLLHHKGFHITFVNT 46 (504)
Q Consensus 12 ~il~~~--~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~ 46 (504)
+++.+. -|+-|-..-...||..|++.|++|..+=-
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~ 38 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDL 38 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 444443 35779999999999999999999998753
No 454
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=26.60 E-value=1.3e+02 Score=31.02 Aligned_cols=41 Identities=12% Similarity=0.156 Sum_probs=34.0
Q ss_pred cEEEEEcCC---CcccHHHHHHHHHHHHhCCCeEEEEeCccchH
Q 010684 11 VHAVCIPSP---FQSHIKAMLKLAKLLHHKGFHITFVNTEFNHR 51 (504)
Q Consensus 11 ~~il~~~~~---~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~ 51 (504)
+|.+|+|.| +.|-=....+||..|++||++||..--++|..
T Consensus 1 ~KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlDPYlN 44 (533)
T COG0504 1 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYLN 44 (533)
T ss_pred CeEEEEeCCeecccccHHHHHHHHHHHHHCCceEEEEeccccee
Confidence 478888888 34777888999999999999999998777654
No 455
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=26.56 E-value=1.1e+02 Score=32.53 Aligned_cols=92 Identities=21% Similarity=0.268 Sum_probs=49.8
Q ss_pred chHhhhcCCCcceEEecC-Cc-hhHHHhhhcCCcEEecCCCC-----CcchhhhhhhhhcceeEEecCCCCCccHHHHHH
Q 010684 372 PQEEVLKHPSIGGFLTHC-GW-NSIVESLCSGVPMICWPFTG-----DQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEK 444 (504)
Q Consensus 372 pq~~lL~~~~~~~~I~HG-G~-gs~~eal~~GvP~v~~P~~~-----DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ 444 (504)
+..+++.-|++++|-+== =| -|-+||+.+|||.|.-=+.+ .+... .. ...|+-+.-+ ...+.++..+
T Consensus 462 ~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~-~~--~~~GV~VvdR---~~~n~~e~v~ 535 (633)
T PF05693_consen 462 DYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIE-DP--EEYGVYVVDR---RDKNYDESVN 535 (633)
T ss_dssp -HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS--HH--GGGTEEEE-S---SSS-HHHHHH
T ss_pred CHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhc-cC--cCCcEEEEeC---CCCCHHHHHH
Confidence 444555555553333200 02 38899999999999887633 11111 22 2347776555 4667777777
Q ss_pred HHHHHhcC------chHHHHHHHHHHHHHHH
Q 010684 445 LVREMMEG------EKGKQMRNKAMEWKGLA 469 (504)
Q Consensus 445 ai~~vl~~------~~~~~~~~~a~~l~~~~ 469 (504)
.|.+.|.+ .+...+|++++++++.+
T Consensus 536 ~la~~l~~f~~~~~rqri~~Rn~ae~LS~~~ 566 (633)
T PF05693_consen 536 QLADFLYKFCQLSRRQRIIQRNRAERLSDLA 566 (633)
T ss_dssp HHHHHHHHHHT--HHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 77766632 23356888888887654
No 456
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=26.44 E-value=1.5e+02 Score=23.99 Aligned_cols=37 Identities=14% Similarity=0.061 Sum_probs=32.8
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCcc
Q 010684 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (504)
Q Consensus 12 ~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~ 48 (504)
||++.--++.|-......+++.|+++|.+|.++....
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4788888899999999999999999999999888765
No 457
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=26.29 E-value=1.9e+02 Score=24.93 Aligned_cols=27 Identities=11% Similarity=0.161 Sum_probs=20.0
Q ss_pred eEEecCCch----hHHHhh-hcCCcEEecCCC
Q 010684 384 GFLTHCGWN----SIVESL-CSGVPMICWPFT 410 (504)
Q Consensus 384 ~~I~HGG~g----s~~eal-~~GvP~v~~P~~ 410 (504)
+++.+.|.| .+.+|. .+++|+|++=-+
T Consensus 62 v~~~~sG~gn~~~~l~~a~~~~~~Pvl~i~g~ 93 (157)
T TIGR03845 62 ILMQSSGLGNSINALASLNKTYGIPLPILASW 93 (157)
T ss_pred EEEeCCcHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 377777765 556667 999999998743
No 458
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.28 E-value=67 Score=30.60 Aligned_cols=58 Identities=14% Similarity=0.190 Sum_probs=38.9
Q ss_pred hHhhhcCCCcceEEecCCchhHHHhhh----cCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHH
Q 010684 373 QEEVLKHPSIGGFLTHCGWNSIVESLC----SGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVRE 448 (504)
Q Consensus 373 q~~lL~~~~~~~~I~HGG~gs~~eal~----~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~ 448 (504)
+.++...+++ +|+=||-||+..+++ .++|++.+-.. . +|.- ..++++++.+++.+
T Consensus 36 ~~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgIn~G------------~--lGFL-----~~~~~~~~~~~l~~ 94 (272)
T PRK02231 36 LEEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGINRG------------N--LGFL-----TDIDPKNAYEQLEA 94 (272)
T ss_pred hHHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeCC------------C--Cccc-----ccCCHHHHHHHHHH
Confidence 3445456777 999999999998865 36787765431 1 2221 23567788888888
Q ss_pred Hhc
Q 010684 449 MME 451 (504)
Q Consensus 449 vl~ 451 (504)
+++
T Consensus 95 ~~~ 97 (272)
T PRK02231 95 CLE 97 (272)
T ss_pred HHh
Confidence 887
No 459
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=26.21 E-value=5.2e+02 Score=25.44 Aligned_cols=32 Identities=28% Similarity=0.287 Sum_probs=22.9
Q ss_pred CeeEEEEcCCcc---hHHHHHHHcCCCeEEEcccc
Q 010684 123 AVSCIISDGFLP---FTITAAQQLGLPIVLFFTIS 154 (504)
Q Consensus 123 ~~DlvI~D~~~~---~~~~~A~~lgiP~v~~~~~~ 154 (504)
++|+||+=.-.. .+..+|..+++|+|.+-++.
T Consensus 78 ~~d~iiavGGGs~~D~aK~ia~~~~~p~i~VPTt~ 112 (345)
T cd08171 78 EADMIFAVGGGKAIDTVKVLADKLGKPVFTFPTIA 112 (345)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHcCCCEEEecCcc
Confidence 889999654332 56666777799999976654
No 460
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=26.18 E-value=99 Score=26.61 Aligned_cols=33 Identities=24% Similarity=0.187 Sum_probs=25.1
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCc
Q 010684 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (504)
Q Consensus 10 ~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~ 47 (504)
..+|+++=.|.-| ...++.|.+.||+|+++.++
T Consensus 13 ~~~vlVvGGG~va-----~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 13 NKVVVIIGGGKIA-----YRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEcCc
Confidence 5677777555434 67899999999999999643
No 461
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=26.18 E-value=3.5e+02 Score=26.07 Aligned_cols=39 Identities=18% Similarity=0.310 Sum_probs=30.9
Q ss_pred CcEEEEEc-CCCcccHHHHHHHHHHHHhCCCeEEEEeCcc
Q 010684 10 KVHAVCIP-SPFQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (504)
Q Consensus 10 ~~~il~~~-~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~ 48 (504)
+++++.++ .++.|-..-+..++..|.++|+.|.++..+.
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~ 72 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDP 72 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 34444444 4577999999999999999999999988654
No 462
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=26.17 E-value=5.1e+02 Score=25.75 Aligned_cols=32 Identities=28% Similarity=0.344 Sum_probs=22.6
Q ss_pred CeeEEEEcCCcc---hHHHHHHHcCCCeEEEcccc
Q 010684 123 AVSCIISDGFLP---FTITAAQQLGLPIVLFFTIS 154 (504)
Q Consensus 123 ~~DlvI~D~~~~---~~~~~A~~lgiP~v~~~~~~ 154 (504)
++|+||+=.-.. .+-.+|..+++|+|.+-++.
T Consensus 84 ~~d~IIavGGGsv~D~aK~iA~~~~~p~i~IPTta 118 (366)
T PRK09423 84 GCDVVIGIGGGKTLDTAKAVADYLGVPVVIVPTIA 118 (366)
T ss_pred CCCEEEEecChHHHHHHHHHHHHcCCCEEEeCCcc
Confidence 889999654332 55666677799999876654
No 463
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=26.13 E-value=68 Score=31.32 Aligned_cols=38 Identities=26% Similarity=0.309 Sum_probs=30.8
Q ss_pred hhcCCCcceEEecCCchhHHHhhh---cCCcEEecCCCCCc
Q 010684 376 VLKHPSIGGFLTHCGWNSIVESLC---SGVPMICWPFTGDQ 413 (504)
Q Consensus 376 lL~~~~~~~~I~HGG~gs~~eal~---~GvP~v~~P~~~DQ 413 (504)
.|..-++..+|.=||.||..-|.. +|+|+|++|.+.|=
T Consensus 87 ~l~~~~Id~Li~IGGdgs~~~a~~L~e~~i~vigiPkTIDN 127 (317)
T cd00763 87 QLKKHGIDALVVIGGDGSYMGAMRLTEHGFPCVGLPGTIDN 127 (317)
T ss_pred HHHHcCCCEEEEECCchHHHHHHHHHHcCCCEEEecccccC
Confidence 466677788999999999887754 59999999986554
No 464
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=25.71 E-value=5.8e+02 Score=24.22 Aligned_cols=41 Identities=17% Similarity=0.171 Sum_probs=34.6
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccch
Q 010684 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNH 50 (504)
Q Consensus 10 ~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~ 50 (504)
..+++|+-..+.|-..-+..|+..+..+|+.|.+++...++
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r 115 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 115 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 35788888788898888999999999999999999986553
No 465
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=25.52 E-value=1.2e+02 Score=29.27 Aligned_cols=52 Identities=13% Similarity=0.164 Sum_probs=37.7
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccch--HHHHhhhcCCCCCCCCCeeEEeCCC
Q 010684 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNH--RRLLKARGQHSLDGLPSFRFEAIPD 75 (504)
Q Consensus 9 ~~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~l~~ 75 (504)
+..+|+++-+|++||.+ |.-|++.|.+|.+..-+... +..++. |+++..+.+
T Consensus 17 kgK~iaIIGYGsQG~ah-----alNLRDSGlnViiGlr~g~~s~~kA~~d----------Gf~V~~v~e 70 (338)
T COG0059 17 KGKKVAIIGYGSQGHAQ-----ALNLRDSGLNVIIGLRKGSSSWKKAKED----------GFKVYTVEE 70 (338)
T ss_pred cCCeEEEEecChHHHHH-----HhhhhhcCCcEEEEecCCchhHHHHHhc----------CCEeecHHH
Confidence 35699999999999987 56789999999988754333 233333 777766653
No 466
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=25.19 E-value=91 Score=29.36 Aligned_cols=40 Identities=10% Similarity=0.252 Sum_probs=28.9
Q ss_pred cEEEEEcCCCc---ccHHHHHHHHHHHHhCCCeEEEEeCccch
Q 010684 11 VHAVCIPSPFQ---SHIKAMLKLAKLLHHKGFHITFVNTEFNH 50 (504)
Q Consensus 11 ~~il~~~~~~~---GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~ 50 (504)
+|.+|++.|.. |-=....+|+..|..+|++|++.--++|.
T Consensus 1 tKyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DPYl 43 (276)
T PF06418_consen 1 TKYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDPYL 43 (276)
T ss_dssp -EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-SS
T ss_pred CcEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeecccc
Confidence 47888888843 66678899999999999999998766654
No 467
>PLN02778 3,5-epimerase/4-reductase
Probab=24.95 E-value=1.2e+02 Score=29.14 Aligned_cols=39 Identities=13% Similarity=0.138 Sum_probs=25.2
Q ss_pred CCCCCCCCCCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEE
Q 010684 1 MESKPKACSKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFV 44 (504)
Q Consensus 1 ~~~~~~~~~~~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~ 44 (504)
|.++.+.. +|||++. |+.|.+= ..|++.|.++||+|++.
T Consensus 1 ~~~~~~~~-~~kiLVt--G~tGfiG--~~l~~~L~~~g~~V~~~ 39 (298)
T PLN02778 1 SNGTAGSA-TLKFLIY--GKTGWIG--GLLGKLCQEQGIDFHYG 39 (298)
T ss_pred CCCCCCCC-CCeEEEE--CCCCHHH--HHHHHHHHhCCCEEEEe
Confidence 44555544 6786654 4444442 35788899999999854
No 468
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=24.85 E-value=1.5e+02 Score=27.22 Aligned_cols=38 Identities=13% Similarity=0.212 Sum_probs=33.6
Q ss_pred CcEEEEEcCC-CcccHHHHHHHHHHHHhCCCeEEEEeCc
Q 010684 10 KVHAVCIPSP-FQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (504)
Q Consensus 10 ~~~il~~~~~-~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~ 47 (504)
+..|++++=+ -.+...+.....+.|+++|++|.|++|.
T Consensus 150 ~t~vvIiSDg~~~~~~~~~~~~l~~l~~r~~rviwLnP~ 188 (222)
T PF05762_consen 150 RTTVVIISDGWDTNDPEPLAEELRRLRRRGRRVIWLNPL 188 (222)
T ss_pred CcEEEEEecccccCChHHHHHHHHHHHHhCCEEEEECCc
Confidence 5578888887 5699999999999999999999999986
No 469
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=24.78 E-value=2.9e+02 Score=24.15 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHhCCC--------CChHHHHHHHHHHHHhc-CcCCCCCCCC
Q 010684 457 QMRNKAMEWKGLAEEAAAPH--------GSSSLNLDKLVNEILLS-NKHNSSIPSA 503 (504)
Q Consensus 457 ~~~~~a~~l~~~~~~~~~~~--------g~~~~~~~~~~~~~~~~-~~~~~~~~~~ 503 (504)
.+.+...+.++.+.+++..| |.|..+.+-|+.+|..+ .+.+.++|++
T Consensus 22 ~l~~~I~~aa~~i~~~l~~G~Kvl~cGNGgSaadAqHfaael~gRf~~eR~~lpaI 77 (176)
T COG0279 22 ALIEAIERAAQLLVQSLLNGNKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAI 77 (176)
T ss_pred HhHHHHHHHHHHHHHHHHcCCEEEEECCCcchhhHHHHHHHHhhHHHhcCCCCCee
Confidence 45555555555555554444 56678888888888744 6677788875
No 470
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.55 E-value=1.5e+02 Score=25.53 Aligned_cols=49 Identities=12% Similarity=0.137 Sum_probs=32.0
Q ss_pred HHHHHHhhcCCCCCCCCeeEEEEcCCcc----------hHHHHHHHcCCCeEEEccccHHH
Q 010684 107 LDLLAKLNDSSNSVNPAVSCIISDGFLP----------FTITAAQQLGLPIVLFFTISACS 157 (504)
Q Consensus 107 ~~ll~~l~~~~~~~~~~~DlvI~D~~~~----------~~~~~A~~lgiP~v~~~~~~~~~ 157 (504)
+..+..+... .=+..||+|++..-+- -+..+|+++|||++-.+.....+
T Consensus 110 rnWlSQL~~h--AYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~N 168 (219)
T KOG0081|consen 110 RNWLSQLQTH--AYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTN 168 (219)
T ss_pred HHHHHHHHHh--hccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcC
Confidence 3455554422 1223899999865432 46788999999999877665544
No 471
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=24.51 E-value=1.7e+02 Score=29.24 Aligned_cols=36 Identities=14% Similarity=0.120 Sum_probs=30.2
Q ss_pred CCCcEEEEEcCCCcccHHHHHHHHHHHHhCC-------CeEEEEeCcc
Q 010684 8 CSKVHAVCIPSPFQSHIKAMLKLAKLLHHKG-------FHITFVNTEF 48 (504)
Q Consensus 8 ~~~~~il~~~~~~~GHi~p~l~LA~~L~~~G-------h~Vt~~~~~~ 48 (504)
+.++||.++-.|++| .+||..|.+.| |+|++..-..
T Consensus 9 ~~~~ki~ViGaG~wG-----tAlA~~l~~n~~~~~~~~~~V~lw~~~~ 51 (365)
T PTZ00345 9 CGPLKVSVIGSGNWG-----SAISKVVGENTQRNYIFHNEVRMWVLEE 51 (365)
T ss_pred cCCCeEEEECCCHHH-----HHHHHHHHhcCCcccCCCCeEEEEEecc
Confidence 557899999998887 57899999997 8999997654
No 472
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=24.50 E-value=1.3e+02 Score=30.21 Aligned_cols=69 Identities=17% Similarity=0.192 Sum_probs=47.2
Q ss_pred cceEEecCCchhHHHhhhc-----------------CCcEEecCCCCCcchhhhhhhhhcceeEEecCC--CCCccHHHH
Q 010684 382 IGGFLTHCGWNSIVESLCS-----------------GVPMICWPFTGDQPTNGRYVCNEWGVGMEINGD--DEDVIRNEV 442 (504)
Q Consensus 382 ~~~~I~HGG~gs~~eal~~-----------------GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~--~~~~~~~~l 442 (504)
.++++|.||..+..-|+.+ +.|++.++-.. ++-+.+-+ ..+|+|+..-.. +..++.++|
T Consensus 104 ~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a-H~S~~Kaa-~~lGlg~~~I~~~~~~~md~~~L 181 (373)
T PF00282_consen 104 AGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA-HYSIEKAA-RILGLGVRKIPTDEDGRMDIEAL 181 (373)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS--THHHHHH-HHTTSEEEEE-BBTTSSB-HHHH
T ss_pred CceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc-ccHHHHhc-ceeeeEEEEecCCcchhhhHHHh
Confidence 5679999999888777533 35677777655 46666666 788999665422 246788899
Q ss_pred HHHHHHHhcC
Q 010684 443 EKLVREMMEG 452 (504)
Q Consensus 443 ~~ai~~vl~~ 452 (504)
.++|.+...+
T Consensus 182 ~~~l~~~~~~ 191 (373)
T PF00282_consen 182 EKALEKDIAN 191 (373)
T ss_dssp HHHHHHHHHT
T ss_pred hhhhcccccc
Confidence 9988877654
No 473
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=24.49 E-value=4.6e+02 Score=22.55 Aligned_cols=24 Identities=25% Similarity=0.138 Sum_probs=19.4
Q ss_pred eEEEEcCCcchHHHHHHHcCCCeEEE
Q 010684 125 SCIISDGFLPFTITAAQQLGLPIVLF 150 (504)
Q Consensus 125 DlvI~D~~~~~~~~~A~~lgiP~v~~ 150 (504)
-++|.|. ...+..|+..|+++|.+
T Consensus 161 ~v~vgD~--~~di~aA~~aG~~~i~v 184 (185)
T TIGR01990 161 CIGIEDA--QAGIEAIKAAGMFAVGV 184 (185)
T ss_pred eEEEecC--HHHHHHHHHcCCEEEec
Confidence 4667776 47899999999999875
No 474
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=24.45 E-value=79 Score=31.00 Aligned_cols=37 Identities=22% Similarity=0.255 Sum_probs=30.2
Q ss_pred hhcCCCcceEEecCCchhHHHhhh---cCCcEEecCCCCC
Q 010684 376 VLKHPSIGGFLTHCGWNSIVESLC---SGVPMICWPFTGD 412 (504)
Q Consensus 376 lL~~~~~~~~I~HGG~gs~~eal~---~GvP~v~~P~~~D 412 (504)
.|..-++..+|.=||.||..-|.. .|+|+|++|.+.|
T Consensus 89 ~l~~~~Id~LivIGGdgS~~~a~~L~~~gi~vigiPkTID 128 (324)
T TIGR02483 89 NLKELGLDALIAIGGDGTLGIARRLADKGLPVVGVPKTID 128 (324)
T ss_pred HHHHcCCCEEEEECCchHHHHHHHHHhcCCCEEeeccccC
Confidence 556667778999999999987754 5999999998654
No 475
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=24.40 E-value=1.5e+02 Score=25.62 Aligned_cols=29 Identities=21% Similarity=0.173 Sum_probs=24.6
Q ss_pred eEEEecCCccccCHHHHHHHHHHHHhCCC
Q 010684 307 VIYVNFGSFIFMNKQQLIEVAMGLVNSNH 335 (504)
Q Consensus 307 ~V~vs~GS~~~~~~~~~~~~~~a~~~~~~ 335 (504)
.+|+++||-.....+.++..+.++.+.+.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~ 31 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALAD 31 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCC
Confidence 79999999887777778888888888875
No 476
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=24.34 E-value=2.2e+02 Score=25.16 Aligned_cols=100 Identities=11% Similarity=0.040 Sum_probs=0.0
Q ss_pred hhhccccCCCCCeeEEEecCCccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHhhccCcEEEeecch
Q 010684 294 ECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQ 373 (504)
Q Consensus 294 ~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq 373 (504)
++-++|.... ...|+.|. ....+....++..+.+-.++=++.... ........-.+..+++..+..
T Consensus 23 ~lG~~la~~g---~~lV~GGg----~~GlM~a~a~ga~~~gG~viGi~p~~l-------~~~~~~~~~~~~~i~~~~~~~ 88 (178)
T TIGR00730 23 ELGAYLAGQG---WGLVYGGG----RVGLMGAIADAAMENGGTAVGVNPSGL-------FSGEVVHQNLTELIEVNGMHE 88 (178)
T ss_pred HHHHHHHHCC---CEEEECCC----hHhHHHHHHHHHHhcCCeEEEecchhh-------hhhhccCCCCCceEEECCHHH
Q ss_pred Hh-hhcCCCcceEEecCCchhHHHhhhc---------CCcEEec
Q 010684 374 EE-VLKHPSIGGFLTHCGWNSIVESLCS---------GVPMICW 407 (504)
Q Consensus 374 ~~-lL~~~~~~~~I~HGG~gs~~eal~~---------GvP~v~~ 407 (504)
.. +|-..+-..++--||.||+-|.+.. .+|++++
T Consensus 89 Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~ 132 (178)
T TIGR00730 89 RKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILF 132 (178)
T ss_pred HHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEE
No 477
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=24.32 E-value=2.2e+02 Score=28.93 Aligned_cols=30 Identities=23% Similarity=0.187 Sum_probs=22.4
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhC-CCeEEEEe
Q 010684 11 VHAVCIPSPFQSHIKAMLKLAKLLHHK-GFHITFVN 45 (504)
Q Consensus 11 ~~il~~~~~~~GHi~p~l~LA~~L~~~-Gh~Vt~~~ 45 (504)
|||+++-.++..| +|++.|++. |+.+.++.
T Consensus 1 ~kvliiG~G~~~~-----~l~~~l~~~~~~~~i~~~ 31 (420)
T PRK00885 1 MKVLVIGSGGREH-----ALAWKLAQSPLVEKVYVA 31 (420)
T ss_pred CEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEe
Confidence 6899999998777 499999886 54444443
No 478
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=24.18 E-value=1.6e+02 Score=28.02 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=31.9
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccch
Q 010684 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNH 50 (504)
Q Consensus 12 ~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~ 50 (504)
.|+|+-.++-|-..-...||..|++.|++|.+++...++
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r 112 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFR 112 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence 444555556799999999999999999999999987653
No 479
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=24.17 E-value=1.5e+02 Score=30.05 Aligned_cols=47 Identities=17% Similarity=0.272 Sum_probs=34.6
Q ss_pred HHHHHHHhhcCCCCCCCCeeEEEEcCCcc----hHHHHH---HHcCCCeEEEccccHHHH
Q 010684 106 FLDLLAKLNDSSNSVNPAVSCIISDGFLP----FTITAA---QQLGLPIVLFFTISACSF 158 (504)
Q Consensus 106 ~~~ll~~l~~~~~~~~~~~DlvI~D~~~~----~~~~~A---~~lgiP~v~~~~~~~~~~ 158 (504)
-.++.+.+++. +.|.||-.+.|. |+..++ ++.|||+|.+.+......
T Consensus 325 g~eIa~~Lk~d------gVDAvILtstCgtCtrcga~m~keiE~~GIPvV~i~~~~pI~~ 378 (431)
T TIGR01917 325 AKEFSKELLAA------GVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHICTVTPIAL 378 (431)
T ss_pred HHHHHHHHHHc------CCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEeechhHHH
Confidence 34677788877 999999886655 555554 567999999987766543
No 480
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=23.92 E-value=1.2e+02 Score=32.05 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=22.0
Q ss_pred CeeEEEEcCCcchHHHHHHHcCCCeEEEc
Q 010684 123 AVSCIISDGFLPFTITAAQQLGLPIVLFF 151 (504)
Q Consensus 123 ~~DlvI~D~~~~~~~~~A~~lgiP~v~~~ 151 (504)
+||+||.+. ....+|+++|||++.+.
T Consensus 362 ~PdliiG~~---~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 362 APELVLGTQ---MERHSAKRLGIPCAVIS 387 (519)
T ss_pred CCCEEEEcc---hHHHHHHHcCCCEEEec
Confidence 899999886 56778999999998764
No 481
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=23.91 E-value=5.3e+02 Score=27.52 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=21.8
Q ss_pred ceEEecCCch------hHHHhhhcCCcEEecC
Q 010684 383 GGFLTHCGWN------SIVESLCSGVPMICWP 408 (504)
Q Consensus 383 ~~~I~HGG~g------s~~eal~~GvP~v~~P 408 (504)
++++.|.|-| .+++|...++|||++-
T Consensus 69 gv~~vt~GPG~~N~l~gl~~A~~~~~Pvl~i~ 100 (574)
T PRK06466 69 GVVLVTSGPGATNAITGIATAYMDSIPMVVLS 100 (574)
T ss_pred EEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 3488888844 8899999999999995
No 482
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=23.74 E-value=1.4e+02 Score=28.69 Aligned_cols=39 Identities=13% Similarity=-0.012 Sum_probs=30.5
Q ss_pred CcE-EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCcc
Q 010684 10 KVH-AVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (504)
Q Consensus 10 ~~~-il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~ 48 (504)
||+ |.|+.-|+-|-..-...||..|++.|++|.++-...
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~ 42 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDP 42 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 444 445455577999999999999999999999995443
No 483
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=23.72 E-value=4.3e+02 Score=28.13 Aligned_cols=84 Identities=14% Similarity=0.113 Sum_probs=45.8
Q ss_pred hhhccccCCCCCeeEEEecCCccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHhhccCcEEEeecch
Q 010684 294 ECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQ 373 (504)
Q Consensus 294 ~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq 373 (504)
+..+.|... +||+|+++.|-......+.+.++++ +++.+++....+. ..+|....-.+ ..+-..+...-
T Consensus 192 ~aa~~L~~A-krPvIl~G~G~~~a~a~~~l~~lae---~~~~Pv~~t~~gk------g~~p~~hp~~l-G~~g~~g~~~a 260 (550)
T COG0028 192 KAAELLAEA-KRPVILAGGGVRRAGASEELRELAE---KLGAPVVTTLMGK------GAVPEDHPLSL-GMLGMHGTKAA 260 (550)
T ss_pred HHHHHHHhC-CCCEEEECCCccccccHHHHHHHHH---HHCCCEEEccCcC------ccCCCCCcccc-ccccccccHHH
Confidence 344556555 6799999888765554555666644 4588888776654 22332210000 00011111233
Q ss_pred HhhhcCCCcceEEecCC
Q 010684 374 EEVLKHPSIGGFLTHCG 390 (504)
Q Consensus 374 ~~lL~~~~~~~~I~HGG 390 (504)
...+..+|+ +|.=|.
T Consensus 261 ~~~~~~aDl--ll~vG~ 275 (550)
T COG0028 261 NEALEEADL--LLAVGA 275 (550)
T ss_pred HHHhhcCCE--EEEecC
Confidence 457777888 776665
No 484
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=23.70 E-value=1e+02 Score=29.63 Aligned_cols=101 Identities=16% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCeEEEEeCccchHHHHhhhcCCCCCC-CCCeeEEeCCCCCCCCCCCCCCcccHHHHHHHHHHhhcchHH
Q 010684 28 LKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDG-LPSFRFEAIPDGLPASSDESPTAQDAYSLGENIINNVLLHPF 106 (504)
Q Consensus 28 l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (504)
+.+++.|.++|++|..+..+...+.+........... ..+.++.-+|-..... ...+....... .-.+
T Consensus 14 ~~~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~----------~~~i~~~~~~~-~~~l 82 (287)
T TIGR02853 14 LELIRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLTTLDVVILPVPGTSH----------DGKVATVFSNE-KVVL 82 (287)
T ss_pred HHHHHHHHHCCCEEEEEeccccccccccceeecchhhhhccCCEEEECCccccC----------CceEecccccC-Cccc
Q ss_pred -HHHHHHhhcCCCCCCCCeeEEEEcCCcchHHH-HHHHcCCCeE
Q 010684 107 -LDLLAKLNDSSNSVNPAVSCIISDGFLPFTIT-AAQQLGLPIV 148 (504)
Q Consensus 107 -~~ll~~l~~~~~~~~~~~DlvI~D~~~~~~~~-~A~~lgiP~v 148 (504)
+++++.+ ++-+++.......-+. .|+..||+++
T Consensus 83 ~~~~l~~~---------~~~~~~~~G~~~~~l~~~a~~~gi~v~ 117 (287)
T TIGR02853 83 TPELLEST---------KGHCTIYVGISNPYLEQLAADAGVKLI 117 (287)
T ss_pred cHHHHHhc---------CCCCEEEEecCCHHHHHHHHHCCCeEE
No 485
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=23.70 E-value=4.6e+02 Score=24.13 Aligned_cols=30 Identities=20% Similarity=0.270 Sum_probs=25.7
Q ss_pred CcccHHHHHHHHHHHHhCCCeEEEEeCccc
Q 010684 20 FQSHIKAMLKLAKLLHHKGFHITFVNTEFN 49 (504)
Q Consensus 20 ~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~ 49 (504)
+.|---=...++.-+...||+|++++++.-
T Consensus 38 ~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T 67 (235)
T COG2874 38 GTGKSVLSQRFAYGFLMNGYRVTYVSTELT 67 (235)
T ss_pred CccHHHHHHHHHHHHHhCCceEEEEEechh
Confidence 557777788999999999999999998753
No 486
>PLN02293 adenine phosphoribosyltransferase
Probab=23.69 E-value=2.5e+02 Score=24.97 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=21.2
Q ss_pred CeeEEEEcCC--cchHHHHHHHcCCCeEEE
Q 010684 123 AVSCIISDGF--LPFTITAAQQLGLPIVLF 150 (504)
Q Consensus 123 ~~DlvI~D~~--~~~~~~~A~~lgiP~v~~ 150 (504)
++|+|++-.. ...+..+|..+|+|++.+
T Consensus 62 ~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~ 91 (187)
T PLN02293 62 GISVVAGIEARGFIFGPPIALAIGAKFVPL 91 (187)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHCCCEEEE
Confidence 7799885432 336788999999998864
No 487
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=23.63 E-value=7e+02 Score=25.27 Aligned_cols=139 Identities=12% Similarity=0.082 Sum_probs=76.3
Q ss_pred CCeeEEEecCCccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHhhccC-cEEEee-------cchHh
Q 010684 304 PKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEK-GFVASW-------CPQEE 375 (504)
Q Consensus 304 ~~~~V~vs~GS~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~n-v~~~~~-------vpq~~ 375 (504)
++.+++.-.||+... ....+++.+.+.|..+-.+..... .+.+...-.+.+.++ ++..-| +.|..
T Consensus 6 ~k~IllgvTGsiaa~---k~~~lv~~L~~~g~~V~vv~T~~A----~~fi~~~~l~~l~~~~V~~~~~~~~~~~~~~hi~ 78 (399)
T PRK05579 6 GKRIVLGVSGGIAAY---KALELVRRLRKAGADVRVVMTEAA----KKFVTPLTFQALSGNPVSTDLWDPAAEAAMGHIE 78 (399)
T ss_pred CCeEEEEEeCHHHHH---HHHHHHHHHHhCCCEEEEEECHhH----HHHHhHHHHHHhhCCceEccccccccCCCcchhh
Confidence 345777666776422 334566667777777655554321 011111112233443 332212 23455
Q ss_pred hhcCCCcceEEecCCchhHHH-------------hhhcCCcEEecCCCCCc-------chhhhhhhhhcceeEEecCC--
Q 010684 376 VLKHPSIGGFLTHCGWNSIVE-------------SLCSGVPMICWPFTGDQ-------PTNGRYVCNEWGVGMEINGD-- 433 (504)
Q Consensus 376 lL~~~~~~~~I~HGG~gs~~e-------------al~~GvP~v~~P~~~DQ-------~~na~rv~~~~G~G~~l~~~-- 433 (504)
+.+.+|+ .+|.=+-+||+.- ++.+++|++++|-.... -.|-.++ .++|+-+.-...
T Consensus 79 l~~~aD~-~vVaPaTaNtlaKiA~GiaDnllt~~~la~~~pvvi~Pamn~~m~~~p~~~~Nl~~L-~~~G~~ii~P~~g~ 156 (399)
T PRK05579 79 LAKWADL-VLIAPATADLIAKLAHGIADDLLTTTLLATTAPVLVAPAMNTQMWENPATQRNLATL-RSRGVEIIGPASGR 156 (399)
T ss_pred cccccCE-EEEeeCCHHHHHHHHcccCCcHHHHHHHhcCCCEEEEeCCChhHcCCHHHHHHHHHH-HHCCCEEECCCCcc
Confidence 6555665 5677777776554 36679999999953322 2355666 556765433210
Q ss_pred --------CCCccHHHHHHHHHHHhc
Q 010684 434 --------DEDVIRNEVEKLVREMME 451 (504)
Q Consensus 434 --------~~~~~~~~l~~ai~~vl~ 451 (504)
-.-.++++|...+.+.+.
T Consensus 157 la~~~~g~gr~~~~~~I~~~~~~~~~ 182 (399)
T PRK05579 157 LACGDVGPGRMAEPEEIVAAAERALS 182 (399)
T ss_pred ccCCCcCCCCCCCHHHHHHHHHHHhh
Confidence 024678999888888774
No 488
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=23.61 E-value=1.2e+02 Score=31.96 Aligned_cols=27 Identities=11% Similarity=0.226 Sum_probs=22.7
Q ss_pred CeeEEEEcCCcchHHHHHHHcCCCeEEEcc
Q 010684 123 AVSCIISDGFLPFTITAAQQLGLPIVLFFT 152 (504)
Q Consensus 123 ~~DlvI~D~~~~~~~~~A~~lgiP~v~~~~ 152 (504)
+||+||.++ ....+|+++|||++.+..
T Consensus 364 ~pdliiG~~---~er~~a~~lgip~~~i~~ 390 (511)
T TIGR01278 364 EPELVLGTQ---MERHSAKRLDIPCGVISA 390 (511)
T ss_pred CCCEEEECh---HHHHHHHHcCCCEEEecC
Confidence 899999997 567789999999988643
No 489
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=23.33 E-value=7.4e+02 Score=24.58 Aligned_cols=22 Identities=18% Similarity=0.144 Sum_probs=16.0
Q ss_pred HHHHHHHHHhCC-CeEEEEeCcc
Q 010684 27 MLKLAKLLHHKG-FHITFVNTEF 48 (504)
Q Consensus 27 ~l~LA~~L~~~G-h~Vt~~~~~~ 48 (504)
.-.++..|.+.| .+|.+++.+.
T Consensus 11 l~~l~~~l~~~~~~~~lvv~~~~ 33 (370)
T cd08551 11 IEKLGEEIKNLGGRKALIVTDPG 33 (370)
T ss_pred HHHHHHHHHHcCCCeEEEEeCcc
Confidence 457778888876 7888887653
No 490
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=23.32 E-value=1.5e+02 Score=28.84 Aligned_cols=49 Identities=16% Similarity=0.191 Sum_probs=37.7
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccchHHHHhhhcCCCCCCCCCeeEEeCC
Q 010684 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIP 74 (504)
Q Consensus 11 ~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 74 (504)
|||+++=.|+.|-+ +|..|.+.||+|++..-+...+.+.+. |+......
T Consensus 1 mkI~IlGaGAvG~l-----~g~~L~~~g~~V~~~~R~~~~~~l~~~----------GL~i~~~~ 49 (307)
T COG1893 1 MKILILGAGAIGSL-----LGARLAKAGHDVTLLVRSRRLEALKKK----------GLRIEDEG 49 (307)
T ss_pred CeEEEECCcHHHHH-----HHHHHHhCCCeEEEEecHHHHHHHHhC----------CeEEecCC
Confidence 68888888888865 578899999999999866656667665 77765544
No 491
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=23.31 E-value=3.8e+02 Score=28.70 Aligned_cols=27 Identities=11% Similarity=0.262 Sum_probs=22.1
Q ss_pred cceEEecCCch------hHHHhhhcCCcEEecC
Q 010684 382 IGGFLTHCGWN------SIVESLCSGVPMICWP 408 (504)
Q Consensus 382 ~~~~I~HGG~g------s~~eal~~GvP~v~~P 408 (504)
.+++++|.|-| .+.+|...++|+|++.
T Consensus 69 ~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 69 MGMVIGQNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred CEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 34499998854 7788999999999996
No 492
>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []. Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.
Probab=23.18 E-value=1.1e+02 Score=27.85 Aligned_cols=41 Identities=22% Similarity=0.261 Sum_probs=27.3
Q ss_pred hHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc-------hHHHHHHHcCCCeEEEc
Q 010684 104 HPFLDLLAKLNDSSNSVNPAVSCIISDGFLP-------FTITAAQQLGLPIVLFF 151 (504)
Q Consensus 104 ~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~-------~~~~~A~~lgiP~v~~~ 151 (504)
+.+.++++++.. ++|+|++|..-. -|..++-.+++|+|.+.
T Consensus 77 P~~l~~l~~l~~-------~~dvilvDG~G~~HpR~~GlA~HlGv~l~iPtIGVA 124 (206)
T PF04493_consen 77 PCILEALEKLKN-------KPDVILVDGHGILHPRRFGLASHLGVLLDIPTIGVA 124 (206)
T ss_dssp HHHHHHHHTSSS---------SCEEEES-SSSSTTS--HHHHHHHHHTS-EEEEE
T ss_pred HHHHHHHHHhcc-------cCCEEEEeCceeecCCCcChhheeeeccCCCEEEEe
Confidence 455666677652 789999998654 46667788899999974
No 493
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=22.94 E-value=5.4e+02 Score=27.36 Aligned_cols=27 Identities=11% Similarity=0.331 Sum_probs=22.3
Q ss_pred cceEEecCCch------hHHHhhhcCCcEEecC
Q 010684 382 IGGFLTHCGWN------SIVESLCSGVPMICWP 408 (504)
Q Consensus 382 ~~~~I~HGG~g------s~~eal~~GvP~v~~P 408 (504)
.+++++|.|-| .+++|...++|||++-
T Consensus 67 ~gv~~~t~GpG~~n~~~gla~A~~~~~Pvl~i~ 99 (563)
T PRK08527 67 VGVAIVTSGPGFTNAVTGLATAYMDSIPLVLIS 99 (563)
T ss_pred CEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 34489898854 7899999999999995
No 494
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=22.93 E-value=3.8e+02 Score=28.41 Aligned_cols=28 Identities=14% Similarity=0.379 Sum_probs=23.0
Q ss_pred CCCcceEEecCCch------hHHHhhhcCCcEEecC
Q 010684 379 HPSIGGFLTHCGWN------SIVESLCSGVPMICWP 408 (504)
Q Consensus 379 ~~~~~~~I~HGG~g------s~~eal~~GvP~v~~P 408 (504)
++.+ +++|.|-| .++||...++|+|++-
T Consensus 63 ~~gv--~~~t~GpG~~n~~~~l~~A~~~~~Pvl~i~ 96 (548)
T PRK08978 63 KVGV--CIATSGPGATNLITGLADALLDSVPVVAIT 96 (548)
T ss_pred CCEE--EEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 3555 88888854 7899999999999995
No 495
>PRK04940 hypothetical protein; Provisional
Probab=22.89 E-value=1.1e+02 Score=27.21 Aligned_cols=32 Identities=16% Similarity=0.061 Sum_probs=26.2
Q ss_pred CeeEEEEcCC-cchHHHHHHHcCCCeEEEcccc
Q 010684 123 AVSCIISDGF-LPFTITAAQQLGLPIVLFFTIS 154 (504)
Q Consensus 123 ~~DlvI~D~~-~~~~~~~A~~lgiP~v~~~~~~ 154 (504)
+++++|..++ .+++..+|+++|+|.|.+.|+-
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv 92 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPNL 92 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCCC
Confidence 4578888876 4489999999999999987754
No 496
>PRK14071 6-phosphofructokinase; Provisional
Probab=22.87 E-value=85 Score=31.29 Aligned_cols=38 Identities=16% Similarity=0.150 Sum_probs=29.9
Q ss_pred hhhcCCCcceEEecCCchhHHHhhh----cCCcEEecCCCCC
Q 010684 375 EVLKHPSIGGFLTHCGWNSIVESLC----SGVPMICWPFTGD 412 (504)
Q Consensus 375 ~lL~~~~~~~~I~HGG~gs~~eal~----~GvP~v~~P~~~D 412 (504)
+.|..-.+..+|.=||.||..-+.. +|+|+|++|.+.|
T Consensus 101 ~~l~~~~Id~Li~IGGdgS~~~a~~L~~~~~i~vIgiPkTID 142 (360)
T PRK14071 101 DGYHSLGLDALIGIGGDGSLAILRRLAQQGGINLVGIPKTID 142 (360)
T ss_pred HHHHHcCCCEEEEECChhHHHHHHHHHHhcCCcEEEeccccc
Confidence 3566667888999999999866543 4999999998654
No 497
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=22.78 E-value=99 Score=28.11 Aligned_cols=41 Identities=24% Similarity=0.292 Sum_probs=28.3
Q ss_pred hHHHHHHHHhhcCCCCCCCCeeEEEEcCCcch-------HHHHHHHcCCCeEEEc
Q 010684 104 HPFLDLLAKLNDSSNSVNPAVSCIISDGFLPF-------TITAAQQLGLPIVLFF 151 (504)
Q Consensus 104 ~~~~~ll~~l~~~~~~~~~~~DlvI~D~~~~~-------~~~~A~~lgiP~v~~~ 151 (504)
+.+.+.++++. ..||+|++|..... |..+...+++|+|.+.
T Consensus 81 p~l~~~~~~l~-------~~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGVA 128 (208)
T cd06559 81 PPLLEALEKLK-------TKPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGVA 128 (208)
T ss_pred HHHHHHHHhCC-------CCCCEEEEeCCccccCCCcchhheeeeecCCCEEEEE
Confidence 34666667764 27999999997652 4445566778988863
No 498
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=22.76 E-value=4e+02 Score=26.98 Aligned_cols=35 Identities=17% Similarity=0.024 Sum_probs=25.4
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCccch
Q 010684 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNH 50 (504)
Q Consensus 11 ~~il~~~~~~~GHi~p~l~LA~~L~~~Gh~Vt~~~~~~~~ 50 (504)
|||+++=.+..+| .|++++++.|+.++++..+.+.
T Consensus 1 ~kiliiG~G~~~~-----~l~~~~~~~~~~~~~~~~~~~~ 35 (423)
T TIGR00877 1 MKVLVIGNGGREH-----ALAWKLAQSPLVKYVYVAPGNA 35 (423)
T ss_pred CEEEEECCChHHH-----HHHHHHHhCCCccEEEEECCCH
Confidence 5888887777754 5788888888877777655443
No 499
>PRK03202 6-phosphofructokinase; Provisional
Probab=22.67 E-value=84 Score=30.73 Aligned_cols=38 Identities=29% Similarity=0.305 Sum_probs=30.9
Q ss_pred hhcCCCcceEEecCCchhHHHhhh---cCCcEEecCCCCCc
Q 010684 376 VLKHPSIGGFLTHCGWNSIVESLC---SGVPMICWPFTGDQ 413 (504)
Q Consensus 376 lL~~~~~~~~I~HGG~gs~~eal~---~GvP~v~~P~~~DQ 413 (504)
.|..-++.++|.=||.+|..-+.. +|+|+|++|.+.|=
T Consensus 88 ~l~~~~Id~Li~IGGd~s~~~a~~L~e~~i~vigiPkTIDN 128 (320)
T PRK03202 88 NLKKLGIDALVVIGGDGSYMGAKRLTEHGIPVIGLPGTIDN 128 (320)
T ss_pred HHHHcCCCEEEEeCChHHHHHHHHHHhcCCcEEEecccccC
Confidence 455667778999999999987754 69999999987654
No 500
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.66 E-value=76 Score=29.92 Aligned_cols=54 Identities=9% Similarity=0.309 Sum_probs=37.1
Q ss_pred CCCcceEEecCCchhHHHhhh-cCCcEEecCCCCCcchhhhhhhhhcceeEEecCCCCCccHHHHHHHHHHHhcCc
Q 010684 379 HPSIGGFLTHCGWNSIVESLC-SGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE 453 (504)
Q Consensus 379 ~~~~~~~I~HGG~gs~~eal~-~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~l~~ai~~vl~~~ 453 (504)
.+++ +|+=||-||+..+++ +++|++.+-.. . +|.- ..++.+++.+++.+++++.
T Consensus 41 ~~d~--vi~iGGDGT~L~a~~~~~~Pilgin~G------------~--lGfl-----~~~~~~~~~~~l~~~~~g~ 95 (256)
T PRK14075 41 TADL--IIVVGGDGTVLKAAKKVGTPLVGFKAG------------R--LGFL-----SSYTLEEIDRFLEDLKNWN 95 (256)
T ss_pred CCCE--EEEECCcHHHHHHHHHcCCCEEEEeCC------------C--Cccc-----cccCHHHHHHHHHHHHcCC
Confidence 4566 999999999999987 46666654421 1 2221 2456788888888888765
Done!