BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010685
(504 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PZ0|A Chain A, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase (Gdpd) From T. Tengcongensis
pdb|2PZ0|B Chain B, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase (Gdpd) From T. Tengcongensis
Length = 252
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 405 SANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDG 449
S LVI+ G S + P T A+++A+ G D I+ VQ++KDG
Sbjct: 9 SMKTLVIAHRGDSKNVPENTIAAFKRAMELGADGIELDVQLTKDG 53
>pdb|1YDY|A Chain A, Crystal Structure Of Periplasmic Glycerophosphodiester
Phosphodiesterase From Escherichia Coli
pdb|1YDY|B Chain B, Crystal Structure Of Periplasmic Glycerophosphodiester
Phosphodiesterase From Escherichia Coli
Length = 356
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQ 153
V+A G SG P+ + A ++ A L D+ +TKD+ + D LD +++A
Sbjct: 33 VIAHRGASGYLPEHTLPAKAMAYAQGAD--YLEQDLVMTKDDNLVVLHDHYLDRVTDVAD 90
Query: 154 IFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQG 190
F + + +++ID+TL+++ ++ +G
Sbjct: 91 RFPDRARK-------DGRYYAIDFTLDEIKSLKFTEG 120
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 9/99 (9%)
Query: 402 ASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLIN 461
A+ S +VI+ GASG P T A A + G D+++ + M+KD NL+
Sbjct: 25 AADSNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDD--------NLVV 76
Query: 462 STNAAQSKFNSITTTIPEIMAGSG-IFSFSLIWDEIQTL 499
+ + + P+ G ++ DEI++L
Sbjct: 77 LHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSL 115
>pdb|3BWV|A Chain A, Crystal Structure Of Deoxyribonucleotidase-like Protein
(np_764060.1) From Staphylococcus Epidermidis Atcc 12228
At 1.55 A Resolution
pdb|3BWV|B Chain B, Crystal Structure Of Deoxyribonucleotidase-like Protein
(np_764060.1) From Staphylococcus Epidermidis Atcc 12228
At 1.55 A Resolution
Length = 180
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 323 SLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDG--- 379
+L + PH V+ E +++ + A D+P SF+ Y+ L EY F+D F G
Sbjct: 67 NLDVXPHAQEVVKQLNEHYDIYIATAAXDVPTSFHDKYEWLLEYFPFLDPQHFVFCGRKN 126
Query: 380 -VLSDF 384
+L+D+
Sbjct: 127 IILADY 132
>pdb|1ZCC|A Chain A, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase From Agrobacterium Tumefaciens Str.C58
pdb|1ZCC|B Chain B, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase From Agrobacterium Tumefaciens Str.C58
pdb|1ZCC|C Chain C, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase From Agrobacterium Tumefaciens Str.C58
pdb|1ZCC|D Chain D, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase From Agrobacterium Tumefaciens Str.C58
pdb|1ZCC|E Chain E, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase From Agrobacterium Tumefaciens Str.C58
pdb|1ZCC|F Chain F, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase From Agrobacterium Tumefaciens Str.C58
Length = 248
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%)
Query: 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSK 469
++S GA+ P T A A+ G D+I+ V+ S DGV + + L +TN
Sbjct: 4 IVSHRGANRFAPENTFAAADLALQQGADYIELDVRESADGVLYVIHDETLDRTTNGTGPV 63
Query: 470 FNSITTTIPEIMAG 483
+ +++ I + AG
Sbjct: 64 GHMLSSEIDTLDAG 77
>pdb|1T8Q|A Chain A, Structural Genomics, Crystal Structure Of
Glycerophosphoryl Diester Phosphodiesterase From E. Coli
pdb|1T8Q|B Chain B, Structural Genomics, Crystal Structure Of
Glycerophosphoryl Diester Phosphodiesterase From E. Coli
pdb|1T8Q|C Chain C, Structural Genomics, Crystal Structure Of
Glycerophosphoryl Diester Phosphodiesterase From E. Coli
pdb|1T8Q|D Chain D, Structural Genomics, Crystal Structure Of
Glycerophosphoryl Diester Phosphodiesterase From E. Coli
Length = 336
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQ 153
V+A G SG P+ + A + A L D+ TKD+ + D LD +++A
Sbjct: 11 VIAHRGASGYLPEHTLPAKAXAYAQGAD--YLEQDLVXTKDDNLVVLHDHYLDRVTDVAD 68
Query: 154 IFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQG 190
F + + +++ID+TL+++ ++ +G
Sbjct: 69 RFPDRARK-------DGRYYAIDFTLDEIKSLKFTEG 98
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 9/100 (9%)
Query: 401 NASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLI 460
NA+ S +VI+ GASG P T A A + G D+++ + +KD NL+
Sbjct: 2 NAADSNEKIVIAHRGASGYLPEHTLPAKAXAYAQGADYLEQDLVXTKDD--------NLV 53
Query: 461 NSTNAAQSKFNSITTTIPEIMAGSG-IFSFSLIWDEIQTL 499
+ + + P+ G ++ DEI++L
Sbjct: 54 VLHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSL 93
>pdb|3QVQ|A Chain A, The Structure Of An Oleispira Antarctica Phosphodiesterase
Olei02445 In Complex With The Product
Sn-Glycerol-3-Phosphate
pdb|3QVQ|B Chain B, The Structure Of An Oleispira Antarctica Phosphodiesterase
Olei02445 In Complex With The Product
Sn-Glycerol-3-Phosphate
pdb|3QVQ|C Chain C, The Structure Of An Oleispira Antarctica Phosphodiesterase
Olei02445 In Complex With The Product
Sn-Glycerol-3-Phosphate
pdb|3QVQ|D Chain D, The Structure Of An Oleispira Antarctica Phosphodiesterase
Olei02445 In Complex With The Product
Sn-Glycerol-3-Phosphate
Length = 252
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSK 469
VI+ G+SG P T + A G+ +++ V +S DG+P L +T+
Sbjct: 12 VIAHRGSSGQAPENTLASLHLAGQQGIKWVEIDVXLSGDGIPVIFHDDYLSRTTDGDGLI 71
Query: 470 FNSITTTIPEIMAGS 484
+ + + ++ AGS
Sbjct: 72 YKTPLAELKQLDAGS 86
>pdb|1U8V|A Chain A, Crystal Structure Of 4-Hydroxybutyryl-Coa Dehydratase From
Clostridium Aminobutyricum: Radical Catalysis Involving
A [4fe-4s] Cluster And Flavin
pdb|1U8V|B Chain B, Crystal Structure Of 4-Hydroxybutyryl-Coa Dehydratase From
Clostridium Aminobutyricum: Radical Catalysis Involving
A [4fe-4s] Cluster And Flavin
pdb|1U8V|C Chain C, Crystal Structure Of 4-Hydroxybutyryl-Coa Dehydratase From
Clostridium Aminobutyricum: Radical Catalysis Involving
A [4fe-4s] Cluster And Flavin
pdb|1U8V|D Chain D, Crystal Structure Of 4-Hydroxybutyryl-Coa Dehydratase From
Clostridium Aminobutyricum: Radical Catalysis Involving
A [4fe-4s] Cluster And Flavin
Length = 490
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 343 VFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLS----DFPLTPSAAVD 393
VF++ + D NY + TEYL +I D VDG ++ D L PSA D
Sbjct: 112 VFSTTYEIDQKYGTNY-HKNFTEYLKYIQENDLIVDGAMTDPKGDRGLAPSAQKD 165
>pdb|3I10|A Chain A, Crystal Structure Of Putative Glycerophosphoryl Diester
Phosphodiesterase (Np_812074.1) From Bacteroides
Thetaiotaomicron Vpi-5482 At 1.35 A Resolution
Length = 278
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 404 KSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINST 463
KS +LV++ G P + A AI+ VD ++ +Q +KDG L N ++ T
Sbjct: 14 KSNKVLVVAHRGNWRSAPENSTAAIDSAIAXKVDIVEIDIQKTKDG-QLILXHDNTLDRT 72
Query: 464 NAAQSKFNSIT 474
+ + + T
Sbjct: 73 TTGKGEIKNWT 83
>pdb|1O1Z|A Chain A, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase (Gdpd) (Tm1621) From Thermotoga
Maritima At 1.60 A Resolution
Length = 234
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDG 449
++V+ G S Y T A+ KAI G + ++ V++SKDG
Sbjct: 13 VIVLGHRGYSAKYLENTLEAFMKAIEAGANGVELDVRLSKDG 54
>pdb|1UTY|A Chain A, Crystal Structure Of The Rna Binding Domain Of Bluetongue
Virus Non-Structural Protein 2(Ns2)
pdb|1UTY|B Chain B, Crystal Structure Of The Rna Binding Domain Of Bluetongue
Virus Non-Structural Protein 2(Ns2)
Length = 187
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 160 KNYLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPG 219
K Y++N VP PG + I + +S ++ GV + T++++ F+ ++V MA +++ G
Sbjct: 54 KGYVLN-VPGPGAYRIQDGQDIISLMLTPHGVEATTERWEEWKFEGVSVTPMATRVQYNG 112
Query: 220 LWLNIQ 225
+ ++ +
Sbjct: 113 VMVDAE 118
>pdb|2PAH|A Chain A, Tetrameric Human Phenylalanine Hydroxylase
pdb|2PAH|B Chain B, Tetrameric Human Phenylalanine Hydroxylase
Length = 335
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 347 NFANDIPISFNYSYDPLTEYLSFIDN 372
NFA IP F+ YDP T+ + +DN
Sbjct: 284 NFAATIPRPFSVRYDPYTQRIEVLDN 309
>pdb|1J8T|A Chain A, Catalytic Domain Of Human Phenylalanine Hydroxylase Fe(Ii)
pdb|1J8U|A Chain A, Catalytic Domain Of Human Phenylalanine Hydroxylase Fe(ii)
In Complex With Tetrahydrobiopterin
pdb|1LRM|A Chain A, Crystal Structure Of Binary Complex Of The Catalytic
Domain Of Human Phenylalanine Hydroxylase With
Dihydrobiopterin (Bh2)
pdb|1KW0|A Chain A, Catalytic Domain Of Human Phenylalanine Hydroxylase
(Fe(Ii) ) In Complex With Tetrahydrobiopterin And
Thienylalanine
pdb|1MMK|A Chain A, Crystal Structure Of Ternary Complex Of The Catalytic
Domain Of Human Phenylalanine Hydroxylase ((Feii))
Complexed With Tetrahydrobiopterin And Thienylalanine
pdb|1MMT|A Chain A, Crystal Structure Of Ternary Complex Of The Catalytic
Domain Of Human Phenylalanine Hydroxylase (Fe(Ii))
Complexed With Tetrahydrobiopterin And Norleucine
Length = 325
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 347 NFANDIPISFNYSYDPLTEYLSFIDN 372
NFA IP F+ YDP T+ + +DN
Sbjct: 299 NFAATIPRPFSVRYDPYTQRIEVLDN 324
>pdb|4ANP|A Chain A, Crystal Structure Of Human Phenylalanine Hydroxylase In
Complex With A Pharmacological Chaperone
Length = 324
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 347 NFANDIPISFNYSYDPLTEYLSFIDN 372
NFA IP F+ YDP T+ + +DN
Sbjct: 298 NFAATIPRPFSVRYDPYTQRIEVLDN 323
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,800,480
Number of Sequences: 62578
Number of extensions: 545934
Number of successful extensions: 1154
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1138
Number of HSP's gapped (non-prelim): 19
length of query: 504
length of database: 14,973,337
effective HSP length: 103
effective length of query: 401
effective length of database: 8,527,803
effective search space: 3419649003
effective search space used: 3419649003
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)