Your job contains 1 sequence.
>010686
MSLLCLHSVFSSPATILHSHSLVQTRPNTPRFVVLSTHSNAKILKTNRKSRYGQTLSLYD
DDSEEEGEDDDDDDDEGKEDDWLADDDDFAEIEEYDVNGSKYRSQKGVNKSKSSRRSPVK
GCGVGSFRSGRSLQGAQEQLDIRNRRNTIKNSFDDTYYNSKDVDQRGKVMTRNATENRYQ
RLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVK
QRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLK
PTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTK
HPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINEL
HNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAGTT
VDKYLAFRQKLLLKDFAKKYERRG
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 010686
(504 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2162092 - symbol:AT5G55580 "AT5G55580" species... 1438 3.9e-155 2
TAIR|locus:2056745 - symbol:EMB93 "EMBRYO DEFECTIVE 93" s... 272 3.5e-23 1
TAIR|locus:2062328 - symbol:AT2G34620 "AT2G34620" species... 261 5.9e-22 1
TAIR|locus:2207420 - symbol:AT1G78930 "AT1G78930" species... 280 9.5e-22 1
TAIR|locus:2139394 - symbol:BSM "AT4G02990" species:3702 ... 275 2.7e-21 1
TAIR|locus:2087926 - symbol:AT3G18870 "AT3G18870" species... 247 2.1e-20 1
TAIR|locus:2039240 - symbol:EMB3114 "AT2G36000" species:3... 242 2.9e-19 1
TAIR|locus:505006461 - symbol:MDA1 "AT4G14605" species:37... 247 3.3e-18 1
TAIR|locus:2051814 - symbol:AT2G44020 "AT2G44020" species... 246 7.1e-18 2
TAIR|locus:2049329 - symbol:EMB2219 "embryo defective 221... 242 2.3e-17 1
ZFIN|ZDB-GENE-040718-359 - symbol:mterfd1 "MTERF domain c... 188 8.6e-12 1
RGD|735158 - symbol:Mterfd1 "MTERF domain containing 1" s... 187 1.2e-11 1
TAIR|locus:2153433 - symbol:PTAC15 "AT5G54180" species:37... 178 1.8e-10 1
UNIPROTKB|E2RL82 - symbol:MTERFD1 "Uncharacterized protei... 176 2.1e-10 1
UNIPROTKB|Q96E29 - symbol:MTERFD1 "mTERF domain-containin... 175 2.7e-10 1
TAIR|locus:2207265 - symbol:AT1G79220 species:3702 "Arabi... 173 4.1e-10 1
UNIPROTKB|G3V130 - symbol:MTERFD1 "mTERF domain-containin... 167 7.6e-10 1
TAIR|locus:2037338 - symbol:AT1G74120 "AT1G74120" species... 171 9.1e-10 2
MGI|MGI:1913660 - symbol:Mterfd1 "MTERF domain containing... 168 1.6e-09 1
UNIPROTKB|F1RY61 - symbol:MTERFD1 "Uncharacterized protei... 167 2.1e-09 1
UNIPROTKB|F1P3M7 - symbol:MTERFD1 "mTERF domain-containin... 158 2.0e-08 1
UNIPROTKB|Q5ZJC8 - symbol:MTERFD1 "mTERF domain-containin... 158 2.0e-08 1
FB|FBgn0037008 - symbol:mTerf3 species:7227 "Drosophila m... 154 4.1e-08 1
UNIPROTKB|Q1LZE3 - symbol:MTERFD1 "Uncharacterized protei... 150 1.6e-07 1
TAIR|locus:2142763 - symbol:AT5G07900 "AT5G07900" species... 106 3.6e-07 2
MGI|MGI:1918240 - symbol:Mterf "mitochondrial transcripti... 135 6.3e-06 1
TAIR|locus:2018057 - symbol:AT1G62120 "AT1G62120" species... 102 1.0e-05 2
TAIR|locus:2036868 - symbol:AT1G61980 "AT1G61980" species... 118 1.7e-05 2
TAIR|locus:2199612 - symbol:AT1G21150 "AT1G21150" species... 128 3.9e-05 1
TAIR|locus:2172798 - symbol:AT5G23930 "AT5G23930" species... 125 0.00011 1
UNIPROTKB|Q99551 - symbol:MTERF "Transcription terminatio... 124 0.00011 1
TAIR|locus:2170209 - symbol:AT5G06810 "AT5G06810" species... 95 0.00011 2
RGD|621318 - symbol:Mterf "mitochondrial transcription te... 123 0.00013 1
TAIR|locus:2036878 - symbol:AT1G61990 "AT1G61990" species... 118 0.00028 2
TAIR|locus:2018042 - symbol:AT1G62110 "AT1G62110" species... 121 0.00031 1
UNIPROTKB|G3MZI9 - symbol:MTERF "Uncharacterized protein"... 118 0.00044 1
TAIR|locus:2103291 - symbol:SHOT1 "AT3G60400" species:370... 119 0.00067 1
>TAIR|locus:2162092 [details] [associations]
symbol:AT5G55580 "AT5G55580" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0048364 "root development" evidence=IMP]
[GO:0048367 "shoot system development" evidence=IMP] EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009507 GO:GO:0048364 GO:GO:0048367
EMBL:AB009050 eggNOG:NOG246142 KO:K15032 InterPro:IPR003690
Pfam:PF02536 SMART:SM00733 UniGene:At.27411 EMBL:AY062691
EMBL:BT000141 IPI:IPI00542422 RefSeq:NP_200369.1
ProteinModelPortal:Q9FM80 SMR:Q9FM80 PRIDE:Q9FM80
EnsemblPlants:AT5G55580.1 GeneID:835652 KEGG:ath:AT5G55580
TAIR:At5g55580 HOGENOM:HOG000084463 InParanoid:Q9FM80 OMA:RPRHRFL
PhylomeDB:Q9FM80 ProtClustDB:CLSN2686991 ArrayExpress:Q9FM80
Genevestigator:Q9FM80 Uniprot:Q9FM80
Length = 496
Score = 1438 (511.3 bits), Expect = 3.9e-155, Sum P(2) = 3.9e-155
Identities = 287/416 (68%), Positives = 335/416 (80%)
Query: 89 FAEIEEYDVNGSKYRSQKGVNKSKSSRRSPVKGCGVGSFRSGRSLQGAQEQLDIRNRRNT 148
FAE+ EY+ K +S K KS ++ VK + ++ LD+
Sbjct: 96 FAEVTEYEKK--KPKSHKQTIAKKSVKKGIVKP---------EESETDEDDLDL----GI 140
Query: 149 IKNSFDDTYYNSKDVDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESH 208
N+ + S +D RGK+ +R E Y RL+EEI++D K +PLLDYLSTFGLKESH
Sbjct: 141 SPNATSEKKKESWRLDGRGKMSSRKYVEKLYPRLAEEIDIDPKCVPLLDYLSTFGLKESH 200
Query: 209 FIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVA 268
F+QMYERHMPSLQINV SA+ERL+YLLSVGVK RD++R+LLRQPQIL+YTVENNL++H++
Sbjct: 201 FVQMYERHMPSLQINVFSAQERLDYLLSVGVKHRDIKRMLLRQPQILQYTVENNLKAHIS 260
Query: 269 FLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVL 328
FL+ LGIPNSKIGQI+AATPSLFSYSVENSL+PT+RYL+EEVGI E +GKVVQLSPQ+L
Sbjct: 261 FLMGLGIPNSKIGQIVAATPSLFSYSVENSLRPTIRYLIEEVGIKETDVGKVVQLSPQIL 320
Query: 329 VQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNS 388
VQR+DI+WNTR +FLSKELGAPRD VVKMV KHPQLLHYSIDDG LPRINFLRSIGM NS
Sbjct: 321 VQRLDITWNTRYMFLSKELGAPRDSVVKMVKKHPQLLHYSIDDGFLPRINFLRSIGMCNS 380
Query: 389 DILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRF 448
DILKVL SLTQVLSLSLEDNLKPKY YL+NEL+NEV LTKYPMYLSLSLDQRIRPRHRF
Sbjct: 381 DILKVLTSLTQVLSLSLEDNLKPKYMYLVNELNNEVHILTKYPMYLSLSLDQRIRPRHRF 440
Query: 449 LVSLKKAPKGPFPLSLFIPTDECFCQKWAGTTVDKYLAFRQKLLLKDFAKKYERRG 504
LV LKK KGPFPLS +P DE FCQ+WAGT+VD YLAFRQ+LLLK+FA KY++RG
Sbjct: 441 LVELKKVRKGPFPLSSLVPNDESFCQQWAGTSVDTYLAFRQRLLLKEFANKYDKRG 496
Score = 96 (38.9 bits), Expect = 3.9e-155, Sum P(2) = 3.9e-155
Identities = 26/52 (50%), Positives = 30/52 (57%)
Query: 12 SPATILHSH--SLVQTRPN--TPRFVVLSTHSNAKILKTNRKSRYGQTLSLY 59
SP +L S S RP+ T FVV HSN KI+ +KSRYGQTLS Y
Sbjct: 22 SPLFVLGSDKCSPATRRPSRKTRGFVVTYAHSNPKIINPKKKSRYGQTLSPY 73
>TAIR|locus:2056745 [details] [associations]
symbol:EMB93 "EMBRYO DEFECTIVE 93" species:3702
"Arabidopsis thaliana" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005739 "mitochondrion" evidence=ISM] [GO:0009793
"embryo development ending in seed dormancy" evidence=IMP]
[GO:0009507 "chloroplast" evidence=IDA] [GO:0071452 "cellular
response to singlet oxygen" evidence=IGI] GO:GO:0009507
EMBL:CP002685 GO:GO:0009793 GO:GO:0071452 KO:K15032
InterPro:IPR003690 Pfam:PF02536 SMART:SM00733 EMBL:AY219044
EMBL:AY649248 IPI:IPI00531063 RefSeq:NP_178405.2 UniGene:At.41435
ProteinModelPortal:Q84X53 SMR:Q84X53 PRIDE:Q84X53
EnsemblPlants:AT2G03050.1 GeneID:814834 KEGG:ath:AT2G03050
TAIR:At2g03050 InParanoid:Q84X53 OMA:ELAEFPH PhylomeDB:Q84X53
ProtClustDB:CLSN2681137 Genevestigator:Q84X53 Uniprot:Q84X53
Length = 283
Score = 272 (100.8 bits), Expect = 3.5e-23, P = 3.5e-23
Identities = 63/223 (28%), Positives = 119/223 (53%)
Query: 228 RERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAAT 287
RE+L YL + V D + L P + + +++ S L S G+ +G+I+
Sbjct: 33 REKLIYLQDLNV---DPHKALRVNPSLRSAPI-SSVVSVETLLSSTGLSRPAVGRILDMF 88
Query: 288 PSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKEL 347
P L + E+ + P +R+L E+ I+E+ + K + P++L+ +D FL K L
Sbjct: 89 PDLLTSDPESEILPVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFL-KTL 147
Query: 348 GAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRS-IGMRNSDILKVLRSLTQVLSLSLE 406
G D + +++ LL +++ L+P+I +L +G ++ K++ +L+ S++
Sbjct: 148 GFVGRDTI--TSRNTVLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSVD 205
Query: 407 DNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFL 449
+NL PK + I E+ +V+ L ++P Y S SL+++I+PRHR L
Sbjct: 206 NNLVPKVEFFIEEMRGDVKELKRFPQYFSFSLERKIKPRHRLL 248
Score = 153 (58.9 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 45/171 (26%), Positives = 84/171 (49%)
Query: 284 IAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFL 343
+ PSL S + + + +V L+ G++ ++G+++ + P +L + FL
Sbjct: 50 LRVNPSLRSAPISSVV--SVETLLSSTGLSRPAVGRILDMFPDLLTSDPESEILPVLRFL 107
Query: 344 SKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSL 403
S E+ D+ K +++ P+LL S+D L P + FL+++G D + R+ T +L
Sbjct: 108 SNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFLKTLGFVGRDTI-TSRN-TVLLVS 165
Query: 404 SLEDNLKPKYTYLINEL---HNEVQSLT-KYPMYLSLSLDQRIRPRHRFLV 450
++E L PK YL L EV + + P L+ S+D + P+ F +
Sbjct: 166 NVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSVDNNLVPKVEFFI 216
Score = 149 (57.5 bits), Expect = 7.9e-08, P = 7.9e-08
Identities = 46/166 (27%), Positives = 84/166 (50%)
Query: 231 LEYLLS-VGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPS 289
L +L + + + ++D+ + + R P++L +V+ L + FL +LG I +
Sbjct: 104 LRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFLKTLGFVGRDT--ITSRNTV 161
Query: 290 LFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGA 349
L +VE +L P + YL E +G + + K+V SP +L +D + + F +E+
Sbjct: 162 LLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSVDNNLVPKVEFFIEEM-- 219
Query: 350 PRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIG--MRNSDILKV 393
R DV K + + PQ +S++ + PR L+ G M S++LKV
Sbjct: 220 -RGDV-KELKRFPQYFSFSLERKIKPRHRLLKEHGILMPLSEMLKV 263
Score = 115 (45.5 bits), Expect = 0.00058, P = 0.00058
Identities = 40/127 (31%), Positives = 64/127 (50%)
Query: 188 LDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINV-CSARERLEYLLS-VGVKQRDVR 245
+D + P L +L T G I R+ L NV + ++EYL +G + +V
Sbjct: 133 VDYQLRPALTFLKTLGFVGRDTIT--SRNTVLLVSNVERTLIPKIEYLEEGLGFTREEVA 190
Query: 246 RILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRY 305
++++R P +L Y+V+NNL V F I + K + P FS+S+E +KP R
Sbjct: 191 KMVVRSPALLTYSVDNNLVPKVEFFIEEMRGDVKE---LKRFPQYFSFSLERKIKPRHR- 246
Query: 306 LVEEVGI 312
L++E GI
Sbjct: 247 LLKEHGI 253
>TAIR|locus:2062328 [details] [associations]
symbol:AT2G34620 "AT2G34620" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM;IDA] GO:GO:0009507 EMBL:CP002685
GenomeReviews:CT485783_GR EMBL:AC004077 KO:K15032
InterPro:IPR003690 Pfam:PF02536 SMART:SM00733 IPI:IPI00545404
PIR:H84758 RefSeq:NP_181009.1 UniGene:At.37779
ProteinModelPortal:O64685 SMR:O64685 STRING:O64685 PaxDb:O64685
PRIDE:O64685 EnsemblPlants:AT2G34620.1 GeneID:818027
KEGG:ath:AT2G34620 TAIR:At2g34620 eggNOG:NOG301834
HOGENOM:HOG000239190 InParanoid:O64685 OMA:RCPALFT PhylomeDB:O64685
ProtClustDB:CLSN2683649 Genevestigator:O64685 Uniprot:O64685
Length = 303
Score = 261 (96.9 bits), Expect = 5.9e-22, P = 5.9e-22
Identities = 60/215 (27%), Positives = 120/215 (55%)
Query: 261 NNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKV 320
++++S + FL S GI + + +I+ P + + V L P +L ++ + E + +V
Sbjct: 85 DSIQSVLHFLQSKGIYPNDLPRILGMCPKILTSDVRTELYPVFMFLSNDLHVPENAFRRV 144
Query: 321 VQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFL 380
++ P++L+ ++ +L + LG D+ + + P LL S++ L+P++ FL
Sbjct: 145 IKKCPRLLISSVEDQLKPALFYLQR-LGLK--DLEALAYQDPILLVSSVEHTLIPKLRFL 201
Query: 381 RSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQ 440
SIG + + ++ + + S+E+N KPK Y ++E+ ++++L ++P Y + SL++
Sbjct: 202 ESIGFSRPEAIGMILRCPALFTFSIENNFKPKLDYFMSEIKGKLENLKEFPQYFAFSLEK 261
Query: 441 RIRPRHRFLVSLKKAPKGPFPLSLFIP-TDECFCQ 474
RI+PRH L S+++ + PLSL + TDE F Q
Sbjct: 262 RIKPRH--LESMERGLE--LPLSLMLKSTDEEFEQ 292
Score = 183 (69.5 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 54/189 (28%), Positives = 96/189 (50%)
Query: 226 SARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLIS-LGIPNSKIGQII 284
S + L +L S G+ D+ RIL P+IL V L FL + L +P + ++I
Sbjct: 86 SIQSVLHFLQSKGIYPNDLPRILGMCPKILTSDVRTELYPVFMFLSNDLHVPENAFRRVI 145
Query: 285 AATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLS 344
P L SVE+ LKP + YL + +G+ K L + P +LV ++ + + FL
Sbjct: 146 KKCPRLLISSVEDQLKPALFYL-QRLGL--KDLEALAYQDPILLVSSVEHTLIPKLRFL- 201
Query: 345 KELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLS 404
+ +G R + + M+ + P L +SI++ P++++ S ++ L+ L+ Q + S
Sbjct: 202 ESIGFSRPEAIGMILRCPALFTFSIENNFKPKLDYFMS-EIKGK--LENLKEFPQYFAFS 258
Query: 405 LEDNLKPKY 413
LE +KP++
Sbjct: 259 LEKRIKPRH 267
Score = 138 (53.6 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 40/174 (22%), Positives = 88/174 (50%)
Query: 281 GQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRC 340
G+ ++ P L S ++ S++ + +L + GI L +++ + P++L +
Sbjct: 70 GKALSLNPCLCSAPLD-SIQSVLHFL-QSKGIYPNDLPRILGMCPKILTSDVRTELYPVF 127
Query: 341 IFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQV 400
+FLS +L P + +++ K P+LL S++D L P + +L+ +G+++ + L + +
Sbjct: 128 MFLSNDLHVPENAFRRVIKKCPRLLISSVEDQLKPALFYLQRLGLKDLEALAYQDPI--L 185
Query: 401 LSLSLEDNLKPKYTYL--INELHNE-VQSLTKYPMYLSLSLDQRIRPRHRFLVS 451
L S+E L PK +L I E + + + P + S++ +P+ + +S
Sbjct: 186 LVSSVEHTLIPKLRFLESIGFSRPEAIGMILRCPALFTFSIENNFKPKLDYFMS 239
Score = 121 (47.7 bits), Expect = 0.00014, P = 0.00014
Identities = 41/143 (28%), Positives = 75/143 (52%)
Query: 194 PLLDYLST-FGLKESHFIQMYERHMPSLQINVCS--ARERLEYLLSVGVKQRDVRRILLR 250
P+ +LS + E+ F ++ ++ P L I+ + L YL +G+K D+ + +
Sbjct: 125 PVFMFLSNDLHVPENAFRRVIKK-CPRLLISSVEDQLKPALFYLQRLGLK--DLEALAYQ 181
Query: 251 QPQILEYTVENNLESHVAFLISLGIPNSK-IGQIIAATPSLFSYSVENSLKPTVRYLVEE 309
P +L +VE+ L + FL S+G + IG I+ P+LF++S+EN+ KP + Y + E
Sbjct: 182 DPILLVSSVEHTLIPKLRFLESIGFSRPEAIGMILRC-PALFTFSIENNFKPKLDYFMSE 240
Query: 310 VGINEKSLGKVVQLSPQVLVQRI 332
+ ++L + Q L +RI
Sbjct: 241 IKGKLENLKEFPQYFAFSLEKRI 263
>TAIR|locus:2207420 [details] [associations]
symbol:AT1G78930 "AT1G78930" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0009507 "chloroplast" evidence=IDA] EMBL:CP002684
GO:GO:0009507 KO:K15032 InterPro:IPR003690 Pfam:PF02536
SMART:SM00733 EMBL:AK228193 IPI:IPI00543979 RefSeq:NP_178014.2
UniGene:At.34214 ProteinModelPortal:Q0WRV2 SMR:Q0WRV2 PRIDE:Q0WRV2
EnsemblPlants:AT1G78930.1 GeneID:844232 KEGG:ath:AT1G78930
TAIR:At1g78930 HOGENOM:HOG000084735 InParanoid:Q0WRV2 OMA:PHILGCS
PhylomeDB:Q0WRV2 ProtClustDB:CLSN2680664 Genevestigator:Q0WRV2
Uniprot:Q0WRV2
Length = 591
Score = 280 (103.6 bits), Expect = 9.5e-22, P = 9.5e-22
Identities = 65/232 (28%), Positives = 124/232 (53%)
Query: 218 PSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPN 277
PS+Q N + S V + D+ + R P +L + +N+E V LG+ +
Sbjct: 330 PSIQENYSHIGS---FFYSESVLKMDIDHAIRRWPLLLGCSA-SNMEMMVKEFDKLGVRD 385
Query: 278 SKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWN 337
++G++I P L + LK V +L E++G ++ +G+++ P++ I+ +
Sbjct: 386 KRMGKVIPKMPQLLLCKPQEFLK-VVCFL-EDLGFQKEIVGQILCRCPEIFGCSIEKTLQ 443
Query: 338 TRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSL 397
+ IFL++ G +++ K+P+ L Y D +LPR+ +L IG+ +I ++R
Sbjct: 444 KKLIFLTR-FGVSTTHFPRIIKKYPEFLIYDADKTVLPRLKYLMEIGISEREIAFMIRKF 502
Query: 398 TQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFL 449
+ +L S++ L+PK+ +L+N + V+ + +YP Y S SL++RI+PR R L
Sbjct: 503 SPILGYSIDKVLRPKFEFLVNSMEKPVREVIEYPRYFSYSLEKRIKPRFRVL 554
Score = 205 (77.2 bits), Expect = 2.6e-13, P = 2.6e-13
Identities = 66/280 (23%), Positives = 137/280 (48%)
Query: 182 LSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLS-VGVK 240
LSEE ++ P++++L + G+ + ++ + P + + R+ + V V
Sbjct: 258 LSEENDMK----PMVEFLESIGIPKYCLGKVLLLYPPIMLGKTEEIKRRVATAMEKVSVV 313
Query: 241 QRDVRRILLRQPQILEYTVENNLESHV-AFLISLGIPNSKIGQIIAATPSLFSYSVENSL 299
+D ++LL+ P IL +++ N SH+ +F S + I I P L S N +
Sbjct: 314 NKDSGKLLLKYPWILSPSIQENY-SHIGSFFYSESVLKMDIDHAIRRWPLLLGCSASN-M 371
Query: 300 KPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVT 359
+ V+ +++G+ +K +GKV+ PQ+L+ + C FL ++LG ++ V +++
Sbjct: 372 EMMVKEF-DKLGVRDKRMGKVIPKMPQLLLCKPQEFLKVVC-FL-EDLGFQKEIVGQILC 428
Query: 360 KHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYL--I 417
+ P++ SI+ L ++ FL G+ + ++++ + L + + P+ YL I
Sbjct: 429 RCPEIFGCSIEKTLQKKLIFLTRFGVSTTHFPRIIKKYPEFLIYDADKTVLPRLKYLMEI 488
Query: 418 NELHNEVQ-SLTKYPMYLSLSLDQRIRPRHRFLVSLKKAP 456
E+ + K+ L S+D+ +RP+ FLV+ + P
Sbjct: 489 GISEREIAFMIRKFSPILGYSIDKVLRPKFEFLVNSMEKP 528
Score = 167 (63.8 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 44/168 (26%), Positives = 85/168 (50%)
Query: 217 MPSLQINVCSARERLE---YLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISL 273
MP Q+ +C +E L+ +L +G ++ V +IL R P+I ++E L+ + FL
Sbjct: 395 MP--QLLLCKPQEFLKVVCFLEDLGFQKEIVGQILCRCPEIFGCSIEKTLQKKLIFLTRF 452
Query: 274 GIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRID 333
G+ + +II P Y + ++ P ++YL+E +GI+E+ + +++ +L ID
Sbjct: 453 GVSTTHFPRIIKKYPEFLIYDADKTVLPRLKYLME-IGISEREIAFMIRKFSPILGYSID 511
Query: 334 ISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLR 381
+ FL + P V+ V ++P+ YS++ + PR L+
Sbjct: 512 KVLRPKFEFLVNSMEKP----VREVIEYPRYFSYSLEKRIKPRFRVLK 555
Score = 129 (50.5 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 50/209 (23%), Positives = 98/209 (46%)
Query: 246 RILLRQ-PQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVR 304
R LL P++L + EN+++ V FL S+GIP +G+++ P + E +K V
Sbjct: 246 RFLLESFPRLLLLSEENDMKPMVEFLESIGIPKYCLGKVLLLYPPIMLGKTEE-IKRRVA 304
Query: 305 YLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQL 364
+E+V + K GK++ P +L I +++ F E + D+ + + P L
Sbjct: 305 TAMEKVSVVNKDSGKLLLKYPWILSPSIQENYSHIGSFFYSE-SVLKMDIDHAIRRWPLL 363
Query: 365 LHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINEL--HN 422
L S + + + +G+R+ + KV+ + Q+L ++ LK + +L
Sbjct: 364 LGCSASN-MEMMVKEFDKLGVRDKRMGKVIPKMPQLLLCKPQEFLK--VVCFLEDLGFQK 420
Query: 423 EV--QSLTKYPMYLSLSLDQRIRPRHRFL 449
E+ Q L + P S+++ ++ + FL
Sbjct: 421 EIVGQILCRCPEIFGCSIEKTLQKKLIFL 449
>TAIR|locus:2139394 [details] [associations]
symbol:BSM "AT4G02990" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0008380 "RNA splicing"
evidence=IMP] [GO:0009536 "plastid" evidence=IDA] [GO:0009790
"embryo development" evidence=IMP] [GO:0032502 "developmental
process" evidence=IMP] [GO:0042793 "transcription from plastid
promoter" evidence=IMP] [GO:0042794 "rRNA transcription from
plastid promoter" evidence=IMP] GO:GO:0009536 EMBL:CP002687
GO:GO:0008380 GO:GO:0009790 EMBL:AF069442 EMBL:AL161495 KO:K15032
InterPro:IPR003690 Pfam:PF02536 SMART:SM00733 HOGENOM:HOG000241428
ProtClustDB:PLN03196 IPI:IPI00547639 PIR:T01394 RefSeq:NP_192208.1
UniGene:At.10877 ProteinModelPortal:Q9ZT96 SMR:Q9ZT96 STRING:Q9ZT96
PRIDE:Q9ZT96 EnsemblPlants:AT4G02990.1 GeneID:828116
KEGG:ath:AT4G02990 TAIR:At4g02990 InParanoid:Q9ZT96 OMA:FPAFFTY
PhylomeDB:Q9ZT96 ArrayExpress:Q9ZT96 Genevestigator:Q9ZT96
GO:GO:0042794 Uniprot:Q9ZT96
Length = 541
Score = 275 (101.9 bits), Expect = 2.7e-21, P = 2.7e-21
Identities = 83/326 (25%), Positives = 158/326 (48%)
Query: 163 VDQRGKVMTRNAT--E--NRY-QRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHM 217
+D GK+ R +T E RY Q L + +D P++ YL +K S ++ ER+
Sbjct: 183 LDYLGKLGVRKSTFTEFLRRYPQVLHSSVVID--LAPVVKYLQGLDIKPSDVPRVLERYP 240
Query: 218 PSLQINVCSARER-LEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIP 276
L + + YL+ +GV +R++ IL R P+IL V ++ V +L LGIP
Sbjct: 241 EVLGFKLEGTMSTSVAYLVGIGVARREIGGILTRYPEILGMRVARIIKPLVEYLEVLGIP 300
Query: 277 NSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISW 336
++I P + + +++++KP V+ L ++ + E SL ++ P+++ +
Sbjct: 301 RLAAARLIEKRPHILGFELDDTVKPNVQIL-QDFNVRETSLPSIIAQYPEIIGIDLKPKL 359
Query: 337 NTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRS 396
+T+ L + +D+ ++ + PQ + S + +L I+FL G +++
Sbjct: 360 DTQRKLLCSAIHLNPEDLGSLIERMPQFVSLS-ESPMLKHIDFLTKCGFSIDQTREMVIG 418
Query: 397 LTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAP 456
QVL+L+L +K + Y E+ +Q L +P + + L+ ++PRH+ ++ KK
Sbjct: 419 CPQVLALNL-GIMKLSFEYFQKEMKRPLQDLVDFPAFFTYGLESTVKPRHKKII--KKGI 475
Query: 457 KGPFPLSLFIPTDECFCQKWAGTTVD 482
K L +DE F Q+ + T+D
Sbjct: 476 KCSLAWMLNC-SDEKFEQRMSYDTID 500
Score = 220 (82.5 bits), Expect = 4.6e-15, P = 4.6e-15
Identities = 55/220 (25%), Positives = 109/220 (49%)
Query: 193 LPLLDYLSTFGLKESHFIQMYERHMPSLQINVC-SARERLEYLLSVGVKQRDVRRILLRQ 251
+P+LDYL G+++S F + R+ L +V ++YL + +K DV R+L R
Sbjct: 180 VPVLDYLGKLGVRKSTFTEFLRRYPQVLHSSVVIDLAPVVKYLQGLDIKPSDVPRVLERY 239
Query: 252 PQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVG 311
P++L + +E + + VA+L+ +G+ +IG I+ P + V +KP V YL E +G
Sbjct: 240 PEVLGFKLEGTMSTSVAYLVGIGVARREIGGILTRYPEILGMRVARIIKPLVEYL-EVLG 298
Query: 312 INEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDD 371
I + ++++ P +L +D + L ++ + ++ ++P+++ +
Sbjct: 299 IPRLAAARLIEKRPHILGFELDDTVKPNVQIL-QDFNVRETSLPSIIAQYPEIIGIDLKP 357
Query: 372 GLLPRINFLRS-IGMRNSDILKVLRSLTQVLSLSLEDNLK 410
L + L S I + D+ ++ + Q +SLS LK
Sbjct: 358 KLDTQRKLLCSAIHLNPEDLGSLIERMPQFVSLSESPMLK 397
Score = 218 (81.8 bits), Expect = 7.7e-15, P = 7.7e-15
Identities = 53/221 (23%), Positives = 111/221 (50%)
Query: 225 CSARER----LEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKI 280
CS ++ L+YL +GV++ L R PQ+L +V +L V +L L I S +
Sbjct: 173 CSVKKNMVPVLDYLGKLGVRKSTFTEFLRRYPQVLHSSVVIDLAPVVKYLQGLDIKPSDV 232
Query: 281 GQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRC 340
+++ P + + +E ++ +V YLV +G+ + +G ++ P++L R+
Sbjct: 233 PRVLERYPEVLGFKLEGTMSTSVAYLVG-IGVARREIGGILTRYPEILGMRVARIIKPLV 291
Query: 341 IFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQV 400
+L + LG PR +++ K P +L + +DD + P + L+ +R + + ++ ++
Sbjct: 292 EYL-EVLGIPRLAAARLIEKRPHILGFELDDTVKPNVQILQDFNVRETSLPSIIAQYPEI 350
Query: 401 LSLSLEDNLKPKYTYLINELH---NEVQSLT-KYPMYLSLS 437
+ + L+ L + L + +H ++ SL + P ++SLS
Sbjct: 351 IGIDLKPKLDTQRKLLCSAIHLNPEDLGSLIERMPQFVSLS 391
Score = 185 (70.2 bits), Expect = 3.6e-11, P = 3.6e-11
Identities = 50/227 (22%), Positives = 110/227 (48%)
Query: 228 RERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAAT 287
+ER+E+L +G+ D+ P +L +V+ N+ + +L LG+ S + +
Sbjct: 148 KERVEFLHKLGLTIEDINNY----PLVLGCSVKKNMVPVLDYLGKLGVRKSTFTEFLRRY 203
Query: 288 PSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKEL 347
P + SV L P V+YL + + I + +V++ P+VL +++ + +T +L +
Sbjct: 204 PQVLHSSVVIDLAPVVKYL-QGLDIKPSDVPRVLERYPEVLGFKLEGTMSTSVAYLVG-I 261
Query: 348 GAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLED 407
G R ++ ++T++P++L + + P + +L +G+ +++ +L L+D
Sbjct: 262 GVARREIGGILTRYPEILGMRVARIIKPLVEYLEVLGIPRLAAARLIEKRPHILGFELDD 321
Query: 408 NLKPKYTYL--INELHNEVQSL-TKYPMYLSLSLDQRIRPRHRFLVS 451
+KP L N + S+ +YP + + L ++ + + L S
Sbjct: 322 TVKPNVQILQDFNVRETSLPSIIAQYPEIIGIDLKPKLDTQRKLLCS 368
Score = 138 (53.6 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 56/216 (25%), Positives = 97/216 (44%)
Query: 240 KQRDVRRILLRQPQILEYTVEN--NLESHVAFLISLGI-PNSKIGQIIAATPSLFSYSVE 296
K RD + + R P +L+ E N FL +GI P+ G + T + VE
Sbjct: 94 KGRDSKSLYSR-PSLLDMNKEKAANRAKVYEFLRGIGIVPDELDGLELPVTADVMKERVE 152
Query: 297 NSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVK 356
K + +E++ LG V+ + +V +D +L K LG + +
Sbjct: 153 FLHK--LGLTIEDINNYPLVLGCSVKKN---MVPVLD--------YLGK-LGVRKSTFTE 198
Query: 357 MVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYL 416
+ ++PQ+LH S+ L P + +L+ + ++ SD+ +VL +VL LE + YL
Sbjct: 199 FLRRYPQVLHSSVVIDLAPVVKYLQGLDIKPSDVPRVLERYPEVLGFKLEGTMSTSVAYL 258
Query: 417 --INELHNEVQS-LTKYPMYLSLSLDQRIRPRHRFL 449
I E+ LT+YP L + + + I+P +L
Sbjct: 259 VGIGVARREIGGILTRYPEILGMRVARIIKPLVEYL 294
>TAIR|locus:2087926 [details] [associations]
symbol:AT3G18870 "AT3G18870" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0016556 "mRNA modification" evidence=RCA]
GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AP002039
KO:K15032 InterPro:IPR003690 Pfam:PF02536 SMART:SM00733
HOGENOM:HOG000239190 EMBL:BT029467 IPI:IPI00540238
RefSeq:NP_188517.1 UniGene:At.21618 UniGene:At.71275
ProteinModelPortal:Q9LHN2 SMR:Q9LHN2 EnsemblPlants:AT3G18870.1
GeneID:821420 KEGG:ath:AT3G18870 TAIR:At3g18870 eggNOG:NOG268043
InParanoid:Q9LHN2 OMA:PAIFGYS PhylomeDB:Q9LHN2
ProtClustDB:CLSN2684540 Genevestigator:Q9LHN2 Uniprot:Q9LHN2
Length = 274
Score = 247 (92.0 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 76/254 (29%), Positives = 129/254 (50%)
Query: 226 SARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIA 285
S RE L +L S+G+ ++ R P + +V + S V L S GI + +++
Sbjct: 35 SHRENLRHLSSLGIVPQNPRLA----PPANDLSV---ILSAVNLLKSKGISDEDFPRLVF 87
Query: 286 ATPSLFSYSVENS-LKPTVRYLVEEVGIN-EKSLGKVVQLSPQVLVQRIDISWNTRCIFL 343
P LFS + + S L P +L E+G + E+S G +V P +L ++ ++L
Sbjct: 88 LCPQLFSPTFDISKLDPVFDFLTGELGASAEESRGLIVNC-PNILFSDVEYCLRPTLVYL 146
Query: 344 SKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSL 403
KELG + H +L+ ++ L ++ FL+SIG + + +V + +
Sbjct: 147 -KELGVRNLNRASKTNAH--VLNTRVEK-LRAKMRFLKSIGFEHEEAARVCGRIPAIFGY 202
Query: 404 SLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLS 463
S+EDNL+PK+ +L+ ++ E++ L K+P Y + SL +RIRPRH L KK + LS
Sbjct: 203 SVEDNLRPKFEFLVYDMERELEELKKFPQYFAFSLGKRIRPRHWHLK--KKNVR--VSLS 258
Query: 464 -LFIPTDECFCQKW 476
+ + D+ F KW
Sbjct: 259 RMLMWGDQKFYSKW 272
>TAIR|locus:2039240 [details] [associations]
symbol:EMB3114 "AT2G36000" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0009507 "chloroplast" evidence=IDA] GO:GO:0009507
EMBL:CP002685 GenomeReviews:CT485783_GR KO:K15032
InterPro:IPR003690 Pfam:PF02536 SMART:SM00733 EMBL:AY039871
EMBL:AY039888 EMBL:AY077666 IPI:IPI00529913 PIR:F84775
RefSeq:NP_850257.1 UniGene:At.21750 ProteinModelPortal:Q9SJ50
EnsemblPlants:AT2G36000.1 GeneID:818173 KEGG:ath:AT2G36000
TAIR:At2g36000 HOGENOM:HOG000149144 InParanoid:Q9SJ50 OMA:PTLYFLQ
PhylomeDB:Q9SJ50 ProtClustDB:CLSN2680066 Genevestigator:Q9SJ50
Uniprot:Q9SJ50
Length = 333
Score = 242 (90.2 bits), Expect = 2.9e-19, P = 2.9e-19
Identities = 67/249 (26%), Positives = 125/249 (50%)
Query: 226 SARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLIS--LGIPNSKIGQI 283
S E+L YL S+G+ D ++ R P +L T + +ES V ++ + + ++
Sbjct: 72 SIHEKLIYLDSLGI---DFLTLINRHPPLLS-TALSAVESVVDYMTTPPINFTLQDFRRL 127
Query: 284 IAATPSLFSYSVENSLKPTVRYLVEEVGINEK-SLGKVVQLSPQVLVQRIDISWNTRCIF 342
++ P L + + + P + +L+ EVG++ L + ++ P++L +D F
Sbjct: 128 VSMCPELLTSPLTSHTIPVITFLLREVGVDSIFDLRQALRRRPRLLACSVDHQLRPTLYF 187
Query: 343 LSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLS 402
L + +G + KH LL S+D+ L+PRI++ +G + + Q+ +
Sbjct: 188 LQR-IG------ILDPHKHTYLLSCSVDNKLVPRIDYFEKLGFSRRSATAMFKRFPQLFN 240
Query: 403 LSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGP-FP 461
S+ +N +PK YL+ E+ +V+ + ++P Y S SL+ RI+PRH A KG FP
Sbjct: 241 YSIAENYEPKLKYLMVEMGRDVREVLEFPQYFSFSLENRIKPRHEAC-----AAKGVRFP 295
Query: 462 LSLFIPTDE 470
L + + T+E
Sbjct: 296 LPVMLKTNE 304
Score = 182 (69.1 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 69/270 (25%), Positives = 125/270 (46%)
Query: 151 NSFDDTYYNSKDVDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFI 210
+S +++ S D+ T T E + EK L YL + G+ F+
Sbjct: 41 SSSSSSFFKSPDIPSLSSTTTTTTTTETL-----ESSIHEK----LIYLDSLGID---FL 88
Query: 211 QMYERHMPSLQINVCSARERLEYLLS--VGVKQRDVRRILLRQPQILEYTVENNLESHVA 268
+ RH P L + + ++Y+ + + +D RR++ P++L + ++ +
Sbjct: 89 TLINRHPPLLSTALSAVESVVDYMTTPPINFTLQDFRRLVSMCPELLTSPLTSHTIPVIT 148
Query: 269 FLI-SLGIPNS-KIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQ 326
FL+ +G+ + + Q + P L + SV++ L+PT+ Y ++ +GI + + LS
Sbjct: 149 FLLREVGVDSIFDLRQALRRRPRLLACSVDHQLRPTL-YFLQRIGILDPHKHTYL-LSCS 206
Query: 327 V---LVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSI 383
V LV RID + K LG R M + PQL +YSI + P++ +L +
Sbjct: 207 VDNKLVPRID--------YFEK-LGFSRRSATAMFKRFPQLFNYSIAENYEPKLKYLM-V 256
Query: 384 GMRNSDILKVLRSLTQVLSLSLEDNLKPKY 413
M D+ +VL Q S SLE+ +KP++
Sbjct: 257 EM-GRDVREVLE-FPQYFSFSLENRIKPRH 284
Score = 123 (48.4 bits), Expect = 0.00010, P = 0.00010
Identities = 46/199 (23%), Positives = 96/199 (48%)
Query: 258 TVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEE-VGINEKS 316
T+E+++ + +L SLGI +I P L S ++ ++++ V Y+ + +
Sbjct: 68 TLESSIHEKLIYLDSLGID---FLTLINRHPPLLSTAL-SAVESVVDYMTTPPINFTLQD 123
Query: 317 LGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRD-DVVKMVTKHPQLLHYSIDDGLLP 375
++V + P++L + FL +E+G D+ + + + P+LL S+D L P
Sbjct: 124 FRRLVSMCPELLTSPLTSHTIPVITFLLREVGVDSIFDLRQALRRRPRLLACSVDHQLRP 183
Query: 376 RINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLT----KYP 431
+ FL+ IG+ + T +LS S+++ L P+ Y +L +S T ++P
Sbjct: 184 TLYFLQRIGILDP------HKHTYLLSCSVDNKLVPRIDYF-EKLGFSRRSATAMFKRFP 236
Query: 432 MYLSLSLDQRIRPRHRFLV 450
+ S+ + P+ ++L+
Sbjct: 237 QLFNYSIAENYEPKLKYLM 255
>TAIR|locus:505006461 [details] [associations]
symbol:MDA1 "AT4G14605" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0006970 "response to osmotic
stress" evidence=IMP] [GO:0009651 "response to salt stress"
evidence=IMP] [GO:0009658 "chloroplast organization" evidence=IMP]
[GO:0009737 "response to abscisic acid stimulus" evidence=IMP]
GO:GO:0009737 EMBL:CP002687 GO:GO:0009651 GO:GO:0009658 KO:K15032
InterPro:IPR003690 Pfam:PF02536 SMART:SM00733 IPI:IPI00532745
RefSeq:NP_567435.4 UniGene:At.33263 ProteinModelPortal:F4JVI3
SMR:F4JVI3 PRIDE:F4JVI3 EnsemblPlants:AT4G14605.1 GeneID:827109
KEGG:ath:AT4G14605 OMA:HLVSRLH PhylomeDB:F4JVI3 Uniprot:F4JVI3
Length = 493
Score = 247 (92.0 bits), Expect = 3.3e-18, P = 3.3e-18
Identities = 73/284 (25%), Positives = 136/284 (47%)
Query: 171 TRNATENRYQR-LSEEIELDEKWL--PLLDYLSTFGLKESHFIQMYERHMPSLQINVCSA 227
T +A + R R +S ELD + P YL GL I+ R +
Sbjct: 172 TDSAADTRKLRAVSRVSELDTEGALRPQTLYLLDLGLNLEQ-IKTITRKFAAFPYYSLDG 230
Query: 228 RER--LEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIA 285
+ + +E+LL +G+ + D+ IL ++PQI ++ +NL+ +AFL +LGI ++ +II+
Sbjct: 231 KIKPVVEFLLDLGIPKSDIPTILCKRPQICGISLTDNLKPTMAFLETLGIDKNQWAKIIS 290
Query: 286 ATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSK 345
P++ +YS L TV +L + G+ E+ +G+++ P ++ ++ + +
Sbjct: 291 RFPAILTYS-RQKLTSTVEFL-SQTGLTEEQIGRILTRCPNIMSYSVEDKLRPTMEYF-R 347
Query: 346 ELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSL 405
L DV ++ + PQ SI+ L P F G +I ++ + + SL
Sbjct: 348 SLNV---DVAVLLHRCPQTFGLSIESNLKPVTEFFLEKGFGLDEIGIMISRYGALYTFSL 404
Query: 406 EDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFL 449
++N+ PK+ Y + L K+P + SL +RI+PR+ +
Sbjct: 405 KENVMPKWDYF-QTMDYPKSELVKFPQFFGYSLQERIKPRYELV 447
Score = 179 (68.1 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 63/242 (26%), Positives = 111/242 (45%)
Query: 186 IELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVR 245
I L + P + +L T G+ ++ + ++ R L + +E+L G+ + +
Sbjct: 262 ISLTDNLKPTMAFLETLGIDKNQWAKIISRFPAILTYSRQKLTSTVEFLSQTGLTEEQIG 321
Query: 246 RILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRY 305
RIL R P I+ Y+VE+ L + + SL N + ++ P F S+E++LKP +
Sbjct: 322 RILTRCPNIMSYSVEDKLRPTMEYFRSL---NVDVAVLLHRCPQTFGLSIESNLKPVTEF 378
Query: 306 LVE------EVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVT 359
+E E+GI G + S L + + W+ F + + P+ ++VK
Sbjct: 379 FLEKGFGLDEIGIMISRYGALYTFS---LKENVMPKWD---YFQTMDY--PKSELVKF-- 428
Query: 360 KHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLS---LEDNLKPKYTYL 416
PQ YS+ + + PR ++ G+R +L L QVLSLS E +K K L
Sbjct: 429 --PQFFGYSLQERIKPRYELVQRSGVR---LL-----LNQVLSLSGIEFEKVVKKKMMKL 478
Query: 417 IN 418
++
Sbjct: 479 VS 480
Score = 176 (67.0 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 51/209 (24%), Positives = 97/209 (46%)
Query: 243 DVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPT 302
D R+ L ++ E E L +L+ LG+ +I I + YS++ +KP
Sbjct: 177 DTRK-LRAVSRVSELDTEGALRPQTLYLLDLGLNLEQIKTITRKFAAFPYYSLDGKIKPV 235
Query: 303 VRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHP 362
V +L++ +GI + + ++ PQ+ + + FL + LG ++ K++++ P
Sbjct: 236 VEFLLD-LGIPKSDIPTILCKRPQICGISLTDNLKPTMAFL-ETLGIDKNQWAKIISRFP 293
Query: 363 QLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHN 422
+L YS L + FL G+ I ++L ++S S+ED L+P Y L+
Sbjct: 294 AILTYSRQK-LTSTVEFLSQTGLTEEQIGRILTRCPNIMSYSVEDKLRPTMEYF-RSLNV 351
Query: 423 EVQSLT-KYPMYLSLSLDQRIRPRHRFLV 450
+V L + P LS++ ++P F +
Sbjct: 352 DVAVLLHRCPQTFGLSIESNLKPVTEFFL 380
Score = 135 (52.6 bits), Expect = 9.9e-06, P = 9.9e-06
Identities = 41/172 (23%), Positives = 79/172 (45%)
Query: 284 IAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFL 343
+ A + E +L+P YL++ +G+N + + + + +D FL
Sbjct: 181 LRAVSRVSELDTEGALRPQTLYLLD-LGLNLEQIKTITRKFAAFPYYSLDGKIKPVVEFL 239
Query: 344 SKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSL 403
+LG P+ D+ ++ K PQ+ S+ D L P + FL ++G+ + K++ +L+
Sbjct: 240 L-DLGIPKSDIPTILCKRPQICGISLTDNLKPTMAFLETLGIDKNQWAKIISRFPAILTY 298
Query: 404 SLEDNLKPKYTYLINELHNEVQS---LTKYPMYLSLSLDQRIRPRHRFLVSL 452
S + L +L E Q LT+ P +S S++ ++RP + SL
Sbjct: 299 SRQ-KLTSTVEFLSQTGLTEEQIGRILTRCPNIMSYSVEDKLRPTMEYFRSL 349
>TAIR|locus:2051814 [details] [associations]
symbol:AT2G44020 "AT2G44020" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002685 GenomeReviews:CT485783_GR EMBL:AC004005
KO:K15032 InterPro:IPR003690 Pfam:PF02536 SMART:SM00733
EMBL:AY039920 EMBL:AY079380 IPI:IPI00516323 PIR:T00682
RefSeq:NP_566005.1 UniGene:At.19499 UniGene:At.71899
ProteinModelPortal:O80572 SMR:O80572 PaxDb:O80572 PRIDE:O80572
EnsemblPlants:AT2G44020.1 GeneID:819007 KEGG:ath:AT2G44020
TAIR:At2g44020 eggNOG:NOG235651 HOGENOM:HOG000241428
InParanoid:O80572 OMA:YFTYSLE PhylomeDB:O80572 ProtClustDB:PLN03196
ArrayExpress:O80572 Genevestigator:O80572 Uniprot:O80572
Length = 507
Score = 246 (91.7 bits), Expect = 7.1e-18, Sum P(2) = 7.1e-18
Identities = 66/251 (26%), Positives = 130/251 (51%)
Query: 233 YLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFS 292
YL+S+GV RD+ ++ + P +L V ++ V +LIS+G+P + +++ +
Sbjct: 222 YLVSIGVSPRDIGPMVTQYPYLLGMRVGTMIKPLVDYLISIGLPKKIVARMLEKRSYIVG 281
Query: 293 YSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRD 352
Y++E ++KP V L+ G+ ++ L ++ PQ+L + +T+ F S +L +
Sbjct: 282 YNLEETVKPNVDCLIS-FGVKKELLPLLIAQYPQILGLPVKAKMSTQQYFFSLKLKIDPE 340
Query: 353 DVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPK 412
++V K PQ++ + ++ I FL + DI K++ Q+L +E +K
Sbjct: 341 GFARVVEKMPQIVSLK-QNVIMKPIEFLLGRAFQVEDIAKMVVRCPQILCSRVE-LMKNS 398
Query: 413 YTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIP-TDEC 471
Y + E+ ++ L +YP Y + SL+ RI+PR++ L S K + L+ F+ +D+
Sbjct: 399 YYFYKTEMGRPMKELVEYPEYFTYSLESRIKPRYQKLQS--KGIRSS--LNWFLNCSDQR 454
Query: 472 FCQKWAGTTVD 482
F ++ G +D
Sbjct: 455 FEERLQGNFID 465
Score = 235 (87.8 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 72/268 (26%), Positives = 136/268 (50%)
Query: 195 LLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQI 254
+ DYL G+ ++ E +PS +C ER+E+L +G+ D+ P +
Sbjct: 86 ICDYLKGLGIITDE-LESIE--LPSTIEVMC---ERVEFLQKLGLTIDDINEY----PLM 135
Query: 255 LEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINE 314
L +V NL +A+L +GI SK+G+ + P + SV L P V++L + + +
Sbjct: 136 LGCSVRKNLIPVLAYLEKIGISRSKLGEFVKNYPQVLHASVVVELAPVVKFL-RGLDVEK 194
Query: 315 KSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLL 374
+ LG V+ P++L +++ + +T +L +PRD + MVT++P LL + +
Sbjct: 195 QDLGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRD-IGPMVTQYPYLLGMRVGTMIK 253
Query: 375 PRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLIN-ELHNEVQSL--TKYP 431
P +++L SIG+ + ++L + ++ +LE+ +KP LI+ + E+ L +YP
Sbjct: 254 PLVDYLISIGLPKKIVARMLEKRSYIVGYNLEETVKPNVDCLISFGVKKELLPLLIAQYP 313
Query: 432 MYLSLSLDQRIRPRHRFL-VSLKKAPKG 458
L L + ++ + F + LK P+G
Sbjct: 314 QILGLPVKAKMSTQQYFFSLKLKIDPEG 341
Score = 186 (70.5 bits), Expect = 6.2e-11, Sum P(2) = 6.2e-11
Identities = 48/241 (19%), Positives = 118/241 (48%)
Query: 193 LPLLDYLSTFGLKESHFIQMYERHMPSLQINVC-SARERLEYLLSVGVKQRDVRRILLRQ 251
+P+L YL G+ S + + + L +V +++L + V+++D+ +L++
Sbjct: 145 IPVLAYLEKIGISRSKLGEFVKNYPQVLHASVVVELAPVVKFLRGLDVEKQDLGYVLMKY 204
Query: 252 PQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVG 311
P++L + +E + + VA+L+S+G+ IG ++ P L V +KP V YL+ +G
Sbjct: 205 PELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYLLGMRVGTMIKPLVDYLIS-IG 263
Query: 312 INEKSLGKVVQLSPQVLVQRID--ISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSI 369
+ +K + ++++ ++ ++ + N C+ G ++ + ++ ++PQ+L +
Sbjct: 264 LPKKIVARMLEKRSYIVGYNLEETVKPNVDCLI---SFGVKKELLPLLIAQYPQILGLPV 320
Query: 370 DDGLLPRINFLR-SIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLT 428
+ + F + + +V+ + Q++SL +KP +L+ +V+ +
Sbjct: 321 KAKMSTQQYFFSLKLKIDPEGFARVVEKMPQIVSLKQNVIMKP-IEFLLGRAF-QVEDIA 378
Query: 429 K 429
K
Sbjct: 379 K 379
Score = 39 (18.8 bits), Expect = 7.1e-18, Sum P(2) = 7.1e-18
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 13 PATILHSHSLVQTRPNTPRF 32
P T + +L+ PN P+F
Sbjct: 22 PITSTEAKTLINPDPNIPQF 41
>TAIR|locus:2049329 [details] [associations]
symbol:EMB2219 "embryo defective 2219" species:3702
"Arabidopsis thaliana" [GO:0005739 "mitochondrion" evidence=ISM]
[GO:0009793 "embryo development ending in seed dormancy"
evidence=NAS] [GO:0009507 "chloroplast" evidence=IDA] [GO:0009506
"plasmodesma" evidence=IDA] GO:GO:0009506 GO:GO:0009507
EMBL:CP002685 KO:K15032 InterPro:IPR003690 Pfam:PF02536
SMART:SM00733 IPI:IPI00895653 RefSeq:NP_179763.3 UniGene:At.39539
ProteinModelPortal:F4IHL3 PRIDE:F4IHL3 EnsemblPlants:AT2G21710.1
GeneID:816708 KEGG:ath:AT2G21710 OMA:EMIADFP ArrayExpress:F4IHL3
Uniprot:F4IHL3
Length = 641
Score = 242 (90.2 bits), Expect = 2.3e-17, P = 2.3e-17
Identities = 77/277 (27%), Positives = 135/277 (48%)
Query: 196 LDYLSTFGL--KESHFIQMYERHMPSLQINVCSARER----LEYLLSVGVKQRDVRRILL 249
++YL FGL +E + Y+ H+ CS ER ++Y +G+ + ++RIL+
Sbjct: 356 INYLKEFGLSTEEVGRLLAYKPHLMG-----CSIEERWKPLVKYFYYLGIPKEGMKRILV 410
Query: 250 RQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEE 309
+P + +E + V FL +GIPN IG ++ PSL + S+ ++P V +L+
Sbjct: 411 VKPILYCIDLEKTIAPKVRFLQEMGIPNEAIGNMLVKFPSLLTNSLYKKIRPVVIFLLTR 470
Query: 310 VGINEKSLGKVVQLSPQVLVQRID--ISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHY 367
G+ +K +GKV+ + P +L I + N R ++S LG + +M+ P LL Y
Sbjct: 471 AGVTQKDIGKVIAMDPALLGCSIGTKLEPNMR-YYIS--LGIRFYQLGEMIADFPMLLRY 527
Query: 368 SIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSL 427
++D+ L P+ +LR +R L+ L + S SLE + P++T ++ N V
Sbjct: 528 NVDN-LRPKYRYLRRTMIRP---LQDLIEFPRFFSYSLERRIIPRHTIMVE---NRVNFK 580
Query: 428 TKYPMYLS-LSLDQRIRP----RHRFLVSLKKAPKGP 459
+Y + + ++R+R R RF L P
Sbjct: 581 LRYMLACTDEEFERRVRDKVERRERFEAGLDSEDSQP 617
Score = 241 (89.9 bits), Expect = 3.0e-17, P = 3.0e-17
Identities = 68/278 (24%), Positives = 139/278 (50%)
Query: 176 ENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLL 235
+N QR EE L+E +++YL + G++ + R L ++ + R+++ L
Sbjct: 271 DNILQRNREE--LNE----IVEYLESNGVRRDWMGYVVGRCPELLSFSMEEVKSRVDFFL 324
Query: 236 SVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSV 295
+G+ Q D ++ P+I+ + +E + +L G+ ++G+++A P L S+
Sbjct: 325 KMGMNQNDFGTMVYDYPKIIGFFSFQVMEKKINYLKEFGLSTEEVGRLLAYKPHLMGCSI 384
Query: 296 ENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVV 355
E KP V+Y +GI ++ + +++ + P + ++ + + FL +E+G P + +
Sbjct: 385 EERWKPLVKYFYY-LGIPKEGMKRILVVKPILYCIDLEKTIAPKVRFL-QEMGIPNEAIG 442
Query: 356 KMVTKHPQLLHYSIDDGLLPRINFLRS-IGMRNSDILKVLRSLTQVLSLSLEDNLKPKYT 414
M+ K P LL S+ + P + FL + G+ DI KV+ +L S+ L+P
Sbjct: 443 NMLVKFPSLLTNSLYKKIRPVVIFLLTRAGVTQKDIGKVIAMDPALLGCSIGTKLEPNMR 502
Query: 415 YLIN---ELHNEVQSLTKYPMYLSLSLDQRIRPRHRFL 449
Y I+ + + + +PM L ++D +RP++R+L
Sbjct: 503 YYISLGIRFYQLGEMIADFPMLLRYNVDN-LRPKYRYL 539
Score = 191 (72.3 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 68/281 (24%), Positives = 133/281 (47%)
Query: 175 TENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYL 234
+E+R+ + + D ++PL+ +L L + ++ + + N+ S R +E+L
Sbjct: 197 SESRFNLRARTVIEDSNFVPLVRWLKHHELSYNRIAKI----ICMSKGNLDSIRIMIEWL 252
Query: 235 LSVGVKQRDVRRILLRQ-PQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSY 293
S+ VK + LR IL+ E L V +L S G+ +G ++ P L S+
Sbjct: 253 KSIHVKGEFIAVAFLRSGDNILQRNREE-LNEIVEYLESNGVRRDWMGYVVGRCPELLSF 311
Query: 294 SVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDD 353
S+E +K V + ++ +G+N+ G +V P++ + + I KE G ++
Sbjct: 312 SMEE-VKSRVDFFLK-MGMNQNDFGTMVYDYPKI-IGFFSFQVMEKKINYLKEFGLSTEE 368
Query: 354 VVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKY 413
V +++ P L+ SI++ P + + +G+ + ++L + + LE + PK
Sbjct: 369 VGRLLAYKPHLMGCSIEERWKPLVKYFYYLGIPKEGMKRILVVKPILYCIDLEKTIAPKV 428
Query: 414 TYLINE-LHNEV--QSLTKYPMYLSLSLDQRIRPRHRFLVS 451
+L + NE L K+P L+ SL ++IRP FL++
Sbjct: 429 RFLQEMGIPNEAIGNMLVKFPSLLTNSLYKKIRPVVIFLLT 469
>ZFIN|ZDB-GENE-040718-359 [details] [associations]
symbol:mterfd1 "MTERF domain containing 1"
species:7955 "Danio rerio" [GO:0003674 "molecular_function"
evidence=ND] ZFIN:ZDB-GENE-040718-359 CTD:51001 HOVERGEN:HBG062577
KO:K15032 InterPro:IPR003690 Pfam:PF02536 SMART:SM00733
EMBL:BC075975 IPI:IPI00510144 RefSeq:NP_001002615.1
UniGene:Dr.161828 GeneID:436888 KEGG:dre:436888 InParanoid:Q6DHJ7
NextBio:20831315 Uniprot:Q6DHJ7
Length = 402
Score = 188 (71.2 bits), Expect = 8.6e-12, P = 8.6e-12
Identities = 73/278 (26%), Positives = 138/278 (49%)
Query: 229 ERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVA----FLISLGIPNSKIGQII 284
E L L+ +GV D+ + +P + V + ++ VA FL LG+ S +G+++
Sbjct: 139 ETLSKLVQLGVNLWDLEQ----RPNVGSMLVRLDFQADVAPRLLFLRDLGVEESTLGRLL 194
Query: 285 AATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVL---VQRIDISWNTRCI 341
P + + S++N L+ V YL + + +S+ +V +P +L V+R+D R
Sbjct: 195 TKNPFILTESLDN-LQARVSYLKSKK-FSAQSVAAMVTKAPYLLNFSVERLD----NRLG 248
Query: 342 FLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLR-SIGMRNSDILKVLRSLTQV 400
F ++LG + +VT+ P+LL S++ + + G R ++I ++ ++ +V
Sbjct: 249 FFQQQLGLSAEKTRYLVTRLPKLLCGSLEP-VKENLKVCELEFGFRGNEIQHIVSTVPKV 307
Query: 401 LSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKA---PK 457
L L+ + L + ++ N ++ + K+P L+ RIR RH FL L +A P
Sbjct: 308 L-LANKRKLTQIFDFVHNTMNIPHSLIAKFPQVLNAKF-LRIRERHLFLEYLGRAQYQPD 365
Query: 458 GPFPLSL----FIPTDECFCQKWAGTTVDKYLAFRQKL 491
P +SL F+P D+ FC + A T++ + F++ L
Sbjct: 366 QPNYISLSRLVFLP-DDVFCSEVALATLEDFERFQKTL 402
>RGD|735158 [details] [associations]
symbol:Mterfd1 "MTERF domain containing 1" species:10116 "Rattus
norvegicus" [GO:0005739 "mitochondrion" evidence=ISO;ISS]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=ISO;ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO;ISS] RGD:735158
GO:GO:0005739 GO:GO:0045892 GO:GO:0006351 GO:GO:0044212 CTD:51001
eggNOG:NOG246142 HOGENOM:HOG000044443 HOVERGEN:HBG062577 KO:K15032
OrthoDB:EOG4CRM08 InterPro:IPR003690 Pfam:PF02536 SMART:SM00733
EMBL:BC062080 IPI:IPI00400733 RefSeq:NP_955419.1 UniGene:Rn.103375
STRING:Q6P6Q6 PRIDE:Q6P6Q6 GeneID:299514 KEGG:rno:299514
UCSC:RGD:735158 InParanoid:Q6P6Q6 NextBio:645359
ArrayExpress:Q6P6Q6 Genevestigator:Q6P6Q6
GermOnline:ENSRNOG00000004492 Uniprot:Q6P6Q6
Length = 409
Score = 187 (70.9 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 87/331 (26%), Positives = 159/331 (48%)
Query: 181 RLSEEIELDE-KWLPLLDYLSTFGLKESHFIQMYERHMP---SLQINVCSARERLEYLLS 236
RL E+ L+E LP L L +E+ I Y +P S + E L+ L+
Sbjct: 95 RLESELPLEELDDLPPLSPLQPVSEEEAIQIAAYSP-LPLSSSTLADYVDHSETLQKLVQ 153
Query: 237 VGV------KQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSL 290
+GV K DV +LLR L + E +++ + FL LG+ ++++G + ++
Sbjct: 154 LGVDLSKIEKHPDVANLLLR----LNF--EKDIKQILLFLKDLGLEDNQLGPFLTKNYAI 207
Query: 291 FSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVL---VQRIDISWNTRCIFLSKEL 347
FS +EN LK V YL + ++ + +V+ +P +L V+R+D R F KEL
Sbjct: 208 FSEDLEN-LKTRVAYL-QSKNFSKTDIACMVKNAPFLLSFSVERLD----NRLGFFQKEL 261
Query: 348 GAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLR-SIGMRNSDILKVLRSLTQVLSLSLE 406
+V + P+LL S++ + + R +G ++++I ++ + ++L+ + +
Sbjct: 262 ELSVKKTRDLVVRLPRLLTGSLEP-VKENMKVYRLELGFKHNEIQHMVTKIPKMLTAN-K 319
Query: 407 DNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKA---PKGPFPLS 463
L + Y+ N ++ + K+P + + +I+ RH FL L KA P P +S
Sbjct: 320 RKLTETFDYVHNVMNIPHHIIVKFPQVFNTRVF-KIKERHLFLAYLGKAQYDPAKPNYVS 378
Query: 464 L--FIP-TDECFCQKWAGTTVDKYLAFRQKL 491
L F+ DE FC++ A +V+ + F + L
Sbjct: 379 LDKFVSFPDEVFCKEIAKASVNDFEKFLKTL 409
>TAIR|locus:2153433 [details] [associations]
symbol:PTAC15 "AT5G54180" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0009295 "nucleoid" evidence=IDA] [GO:0009508
"plastid chromosome" evidence=IDA] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0042793 "transcription from plastid promoter"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] EMBL:CP002688 GO:GO:0009507
EMBL:AB013387 InterPro:IPR003690 Pfam:PF02536 SMART:SM00733
GO:GO:0009508 EMBL:AY081343 EMBL:BT000254 IPI:IPI00519701
RefSeq:NP_200229.1 UniGene:At.29509 ProteinModelPortal:Q9FK23
PRIDE:Q9FK23 EnsemblPlants:AT5G54180.1 GeneID:835506
KEGG:ath:AT5G54180 TAIR:At5g54180 InParanoid:Q9FK23 OMA:DNIEMIC
PhylomeDB:Q9FK23 ProtClustDB:CLSN2686733 ArrayExpress:Q9FK23
Genevestigator:Q9FK23 Uniprot:Q9FK23
Length = 500
Score = 178 (67.7 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 65/216 (30%), Positives = 106/216 (49%)
Query: 247 ILLRQPQILEYTVENNLESHVAFLISL-GIPNSKIGQIIAATPSLFSYSVENSLKPTVRY 305
+L R P IL Y+VE+ + V FL S G+ + ++ +I+ P++ S S E L+P + +
Sbjct: 271 VLRRLPAILSYSVEH-MNGQVEFLKSFAGLTSEQVFKIVHVFPNVISTSKERKLRPRIEF 329
Query: 306 LVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKH-PQL 364
L +E G + + K + +P +L +S N LS +LG +VK+ KH +
Sbjct: 330 L-KECGFDSPGMFKFLSKAPLILA----LSENN----LSHKLGF----LVKIGYKHRTKE 376
Query: 365 LHYSI-------DDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLI 417
L +++ D + I S G+ DIL + QVL + +L+ K YLI
Sbjct: 377 LAFAMGAVTRTSSDNMQRVIGLYLSYGLSFEDILAMSTKHPQVLQYNYT-SLEEKLEYLI 435
Query: 418 NELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLK 453
+ EV+ L +P +L LD RI+ HR+ LK
Sbjct: 436 EYMGREVEELLAFPAFLGYKLDSRIK--HRYEEKLK 469
Score = 156 (60.0 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 52/208 (25%), Positives = 101/208 (48%)
Query: 211 QMYERHMPSLQINVC-SARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAF 269
++ ER + + ++ S +++ LL G+ + + +L + + + + ++E +
Sbjct: 164 ELVERLLSVVDTSILLSFNQKVRLLLLHGIPKEKISHVL-NKVYLNKLLYQKSVED-IER 221
Query: 270 LISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLV 329
LIS P IG IIA P + + +++ L P V ++ G ++ + G V++ P +L
Sbjct: 222 LISFLEPFGGIG-IIARRPVILNSDLDSQLIPRVDFIRNLSGEDDFATGTVLRRLPAILS 280
Query: 330 QRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSD 389
++ N + FL G + V K+V P ++ S + L PRI FL+ G +
Sbjct: 281 YSVE-HMNGQVEFLKSFAGLTSEQVFKIVHVFPNVISTSKERKLRPRIEFLKECGFDSPG 339
Query: 390 ILKVLRSLTQVLSLSLEDNLKPKYTYLI 417
+ K L +L+LS E+NL K +L+
Sbjct: 340 MFKFLSKAPLILALS-ENNLSHKLGFLV 366
Score = 143 (55.4 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 55/245 (22%), Positives = 108/245 (44%)
Query: 187 ELDEKWLPLLDYLSTFGLKESHFIQMYERHMPS-LQINVCSARERLEYLLS-VGVKQRDV 244
+LD + +P +D++ ++ R +P+ L +V ++E+L S G+ V
Sbjct: 245 DLDSQLIPRVDFIRNLSGEDDFATGTVLRRLPAILSYSVEHMNGQVEFLKSFAGLTSEQV 304
Query: 245 RRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVR 304
+I+ P ++ + E L + FL G + + + ++ P + + S EN+L +
Sbjct: 305 FKIVHVFPNVISTSKERKLRPRIEFLKECGFDSPGMFKFLSKAPLILALS-ENNLSHKLG 363
Query: 305 YLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQL 364
+LV+ +G ++ + V R R I L G +D++ M TKHPQ+
Sbjct: 364 FLVK-IGYKHRTKELAFAMGA---VTRTSSDNMQRVIGLYLSYGLSFEDILAMSTKHPQV 419
Query: 365 LHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEV 424
L Y+ L ++ +L I ++ ++L + L L+ +K +Y + E
Sbjct: 420 LQYNYTS-LEEKLEYL--IEYMGREVEELL-AFPAFLGYKLDSRIKHRYEEKLKS-RGEN 474
Query: 425 QSLTK 429
SL K
Sbjct: 475 MSLNK 479
>UNIPROTKB|E2RL82 [details] [associations]
symbol:MTERFD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] GO:GO:0005739
GO:GO:0044212 CTD:51001 KO:K15032 InterPro:IPR003690 Pfam:PF02536
SMART:SM00733 OMA:TRVAYLQ GeneTree:ENSGT00390000005801
EMBL:AAEX03015990 RefSeq:XP_003433727.1 Ensembl:ENSCAFT00000015040
GeneID:100684270 KEGG:cfa:100684270 Uniprot:E2RL82
Length = 417
Score = 176 (67.0 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 66/273 (24%), Positives = 134/273 (49%)
Query: 229 ERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATP 288
E L+ L+ +GV + + +L E +++ + FL LGI ++++G +
Sbjct: 154 ETLQKLVHLGVDLSKIEKHPEAANLLLRLDFEKDIKQILMFLKDLGIEDNQLGPYLTKNY 213
Query: 289 SLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVL---VQRIDISWNTRCIFLSK 345
++FS +EN LK V YL + ++ + ++V+ +P +L V+R+D R F K
Sbjct: 214 AIFSEDLEN-LKTRVAYL-QSKNFSKAQIAQMVRNAPFLLSFSVERLD----NRLGFFQK 267
Query: 346 ELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLR-SIGMRNSDILKVLRSLTQVLSLS 404
EL +V + P+LL S++ + + R +G ++++I ++ + ++L+ +
Sbjct: 268 ELELSVKKTRDLVVRLPRLLTGSLEP-VKENMKVYRLELGFKHNEIQHMITRVPKMLTAN 326
Query: 405 LEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKA---PKGPFP 461
+ L + Y+ N ++ + ++P + L +++ RH FL L +A P P
Sbjct: 327 -KRKLTETFDYVHNVMNIPHHLIVRFPQVFNTRLF-KVKERHLFLTYLGRAQYDPTKPNY 384
Query: 462 LSL--FIPT-DECFCQKWAGTTVDKYLAFRQKL 491
+SL F+ DE FC++ A +V + F + L
Sbjct: 385 ISLDKFVSVPDEIFCEEIAKASVQDFEKFLKTL 417
>UNIPROTKB|Q96E29 [details] [associations]
symbol:MTERFD1 "mTERF domain-containing protein 1,
mitochondrial" species:9606 "Homo sapiens" [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IDA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA]
GO:GO:0005739 GO:GO:0045892 GO:GO:0006351 GO:GO:0044212 CTD:51001
eggNOG:NOG246142 HOGENOM:HOG000044443 HOVERGEN:HBG062577 KO:K15032
OrthoDB:EOG4CRM08 InterPro:IPR003690 Pfam:PF02536 SMART:SM00733
EMBL:AF132946 EMBL:AP003465 EMBL:BC012995 IPI:IPI00101163
IPI:IPI00798150 RefSeq:NP_057026.3 UniGene:Hs.308613 PDB:3M66
PDB:3OPG PDBsum:3M66 PDBsum:3OPG ProteinModelPortal:Q96E29
SMR:Q96E29 STRING:Q96E29 DMDM:74731522 PaxDb:Q96E29 PRIDE:Q96E29
DNASU:51001 Ensembl:ENST00000287025 GeneID:51001 KEGG:hsa:51001
UCSC:uc003yhr.1 GeneCards:GC08M097321 HGNC:HGNC:24258 HPA:HPA002966
neXtProt:NX_Q96E29 PharmGKB:PA142671309 InParanoid:Q96E29
OMA:TRVAYLQ PhylomeDB:Q96E29 EvolutionaryTrace:Q96E29
GenomeRNAi:51001 NextBio:53456 ArrayExpress:Q96E29 Bgee:Q96E29
CleanEx:HS_MTERFD1 Genevestigator:Q96E29 GermOnline:ENSG00000156469
Uniprot:Q96E29
Length = 417
Score = 175 (66.7 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 87/370 (23%), Positives = 172/370 (46%)
Query: 145 RRNTIKNSFDDTYYNSKDVD--QRGKVMTRNATENRYQRLSE---EI---ELDEKWLPLL 196
R +++ NS T +S++ + Q + + N + Q +S E+ ELDE LP L
Sbjct: 62 RTSSLWNSSQSTSSSSQENNSAQSSLLPSMNEQSQKTQNISSFDSELFLEELDE--LPPL 119
Query: 197 DYLSTFGLKESHFIQMY-ERHMPSLQINV---CSARERLEYLLSVGVKQRDVRRILLRQP 252
+ + E IQ+ + +P + E L+ L+ +GV + +
Sbjct: 120 SPMQP--ISEEEAIQIIADPPLPPASFTLRDYVDHSETLQKLVLLGVDLSKIEKHPEAAN 177
Query: 253 QILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGI 312
+L E +++ + FL +GI ++++G + ++FS +EN LK V YL +
Sbjct: 178 LLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLHSK-NF 235
Query: 313 NEKSLGKVVQLSPQVL---VQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSI 369
++ + ++V+ +P +L V+R+D R F KEL +V + P+LL S+
Sbjct: 236 SKADVAQMVRKAPFLLNFSVERLD----NRLGFFQKELELSVKKTRDLVVRLPRLLTGSL 291
Query: 370 DDGLLPRINFLR-SIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLT 428
+ + + R +G ++++I ++ + ++L+ + + L + ++ N + +
Sbjct: 292 EP-VKENMKVYRLELGFKHNEIQHMITRIPKMLTAN-KMKLTETFDFVHNVMSIPHHIIV 349
Query: 429 KYPMYLSLSLDQRIRPRHRFLVSLKKA---PKGPFPLSL----FIPTDECFCQKWAGTTV 481
K+P + L +++ RH FL L +A P P +SL IP DE FC++ A +V
Sbjct: 350 KFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAKPNYISLDKLVSIP-DEIFCEEIAKASV 407
Query: 482 DKYLAFRQKL 491
+ F + L
Sbjct: 408 QDFEKFLKTL 417
>TAIR|locus:2207265 [details] [associations]
symbol:AT1G79220 species:3702 "Arabidopsis thaliana"
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] EMBL:CP002684
GenomeReviews:CT485782_GR EMBL:AC002986 KO:K15032
InterPro:IPR003690 Pfam:PF02536 SMART:SM00733 IPI:IPI00545922
PIR:T01035 RefSeq:NP_565202.1 UniGene:At.34152
ProteinModelPortal:O64531 EnsemblPlants:AT1G79220.1 GeneID:844263
KEGG:ath:AT1G79220 TAIR:At1g79220 eggNOG:NOG329730
HOGENOM:HOG000114992 InParanoid:O64531 OMA:KVQRNMT PhylomeDB:O64531
ProtClustDB:CLSN2689322 Genevestigator:O64531 Uniprot:O64531
Length = 399
Score = 173 (66.0 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 70/323 (21%), Positives = 146/323 (45%)
Query: 196 LDYLSTFGLKESHFIQMYERHMPSLQ-INVCSARERLEYLLSVGVKQRDVRRILLRQPQI 254
L L +G + +++ R P+LQ NV +L L +G+ D+ +IL +P+
Sbjct: 84 LQVLRRWGCDDDEISKLFTRR-PALQRANVAQLEFKLSLLKPLGITSSDLVKILNCRPRF 142
Query: 255 LEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINE 314
++ L+ + + + + + ++I PSL Y +++ +KP + Y + +G ++
Sbjct: 143 --FSCRLVLDERINYFMEILGSKEVLRRVIIRNPSLMLYDLDDKIKPAIEYY-KGLGFSQ 199
Query: 315 KSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLL 374
+ L ++ +S L+ R + + N + ++ K G R+ KM ++ S + +
Sbjct: 200 QDLVAML-ISRPTLIPRTNFN-NEKFEYIEKT-GVTRES--KMFKYVAVIIGVSRMETIE 254
Query: 375 PRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYL 434
++ L G +I + +LSLS+E ++ T++I + S+ K+P L
Sbjct: 255 EKVRNLEKFGFSEEEIWHLYGKCPILLSLSVE-KVQRNMTFVIASMKLPAHSVVKHPCLL 313
Query: 435 SLSLDQRIRPRHRFLVSLKKAPKGPF--PLSLF--IPTDE---------CFCQKWAGTTV 481
L+L+ R++PR + + + P +S+F + E C Q A +
Sbjct: 314 LLNLESRLKPRADLVKRVLEMRLKPLIKEVSIFRAVRMSEKRFLKVYVMCHPQDIATELM 373
Query: 482 DKYLAFRQKLLLKDFAKKYERRG 504
+ Y + L + +KKY R+G
Sbjct: 374 EFYEKSKNMKRLAEKSKKYIRKG 396
>UNIPROTKB|G3V130 [details] [associations]
symbol:MTERFD1 "mTERF domain-containing protein 1,
mitochondrial" species:9606 "Homo sapiens" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] GO:GO:0005739
EMBL:CH471060 InterPro:IPR003690 Pfam:PF02536 SMART:SM00733
EMBL:AP003465 UniGene:Hs.308613 HGNC:HGNC:24258
ProteinModelPortal:G3V130 SMR:G3V130 Ensembl:ENST00000522822
ArrayExpress:G3V130 Bgee:G3V130 Uniprot:G3V130
Length = 296
Score = 167 (63.8 bits), Expect = 7.6e-10, P = 7.6e-10
Identities = 66/274 (24%), Positives = 133/274 (48%)
Query: 229 ERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATP 288
E L+ L+ +GV + + +L E +++ + FL +GI ++++G +
Sbjct: 33 ETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNH 92
Query: 289 SLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVL---VQRIDISWNTRCIFLSK 345
++FS +EN LK V YL + ++ + ++V+ +P +L V+R+D R F K
Sbjct: 93 AIFSEDLEN-LKTRVAYLHSK-NFSKADVAQMVRKAPFLLNFSVERLD----NRLGFFQK 146
Query: 346 ELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLR-SIGMRNSDILKVLRSLTQVLSLS 404
EL +V + P+LL S++ + + R +G ++++I ++ + ++L+ +
Sbjct: 147 ELELSVKKTRDLVVRLPRLLTGSLEP-VKENMKVYRLELGFKHNEIQHMITRIPKMLTAN 205
Query: 405 LEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKA---PKGPFP 461
+ L + ++ N + + K+P + L +++ RH FL L +A P P
Sbjct: 206 -KMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAKPNY 263
Query: 462 LSL----FIPTDECFCQKWAGTTVDKYLAFRQKL 491
+SL IP DE FC++ A +V + F + L
Sbjct: 264 ISLDKLVSIP-DEIFCEEIAKASVQDFEKFLKTL 296
Score = 120 (47.3 bits), Expect = 0.00018, P = 0.00018
Identities = 34/139 (24%), Positives = 71/139 (51%)
Query: 228 RERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAAT 287
++ L +L VG++ + L + I +EN L++ VA+L S + + Q++
Sbjct: 68 KQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLHSKNFSKADVAQMVRKA 126
Query: 288 PSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRID-ISWNTRCIFLSKE 346
P L ++SVE L + + +E+ ++ K +V P++L ++ + N + L E
Sbjct: 127 PFLLNFSVER-LDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRL--E 183
Query: 347 LGAPRDDVVKMVTKHPQLL 365
LG +++ M+T+ P++L
Sbjct: 184 LGFKHNEIQHMITRIPKML 202
>TAIR|locus:2037338 [details] [associations]
symbol:AT1G74120 "AT1G74120" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002684 InterPro:IPR003690 Pfam:PF02536
SMART:SM00733 EMBL:AC079678 IPI:IPI00521430 PIR:C96769
RefSeq:NP_565080.1 UniGene:At.66135 ProteinModelPortal:Q9C6A1
PRIDE:Q9C6A1 EnsemblPlants:AT1G74120.1 GeneID:843752
KEGG:ath:AT1G74120 TAIR:At1g74120 HOGENOM:HOG000006334
InParanoid:Q9C6A1 OMA:FRAGFEV PhylomeDB:Q9C6A1
ProtClustDB:CLSN2689192 ArrayExpress:Q9C6A1 Genevestigator:Q9C6A1
Uniprot:Q9C6A1
Length = 445
Score = 171 (65.3 bits), Expect = 9.1e-10, Sum P(2) = 9.1e-10
Identities = 63/267 (23%), Positives = 111/267 (41%)
Query: 187 ELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRR 246
E KW L G+ S I+ H + I E + L S+G V R
Sbjct: 107 EFLRKWRVPLSNCGKHGVVSSSAIKSVLEHSSRIGIGPDKFNECVRVLKSLGFCDSTVSR 166
Query: 247 ILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYL 306
IL P +L E + + FL+ +GI I + P + E LKP +
Sbjct: 167 ILSSFPGVLLVN-EIEIRRKIEFLVGIGIARDNIERFFHVFPEVLGIGTETRLKPLLDEF 225
Query: 307 VEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLH 366
++ +G ++ + K + P+VL +++ RC+ L L +V+++
Sbjct: 226 MK-MGFSKDDVKKEIAREPRVL--GLELGELPRCLELINTLKCR--EVIRVSIISEGAFR 280
Query: 367 YSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQS 426
+ L R++ L G+ D KV+ +V+ +ED ++ K +L N + +
Sbjct: 281 AGFEVKL--RVDCLCKYGLIRRDAFKVVWKEPRVILYEIED-IEKKIEFLTNRMGFHINC 337
Query: 427 LTKYPMYLSLSLDQRIRPRHRFLVSLK 453
L P YL ++L ++I PR+ + LK
Sbjct: 338 LADVPEYLGVNLQKQIVPRYNVIDYLK 364
Score = 42 (19.8 bits), Expect = 9.1e-10, Sum P(2) = 9.1e-10
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 13 PATILHSHSLVQTRPNTPRFVVLSTHSNAKILKTNRKSRYG 53
P T+ + + +R TP + +H +IL N RYG
Sbjct: 15 PITLFNQIRSLSSRILTP---INQSHYRKRILLANLLQRYG 52
>MGI|MGI:1913660 [details] [associations]
symbol:Mterfd1 "MTERF domain containing 1" species:10090
"Mus musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=ISO;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO;IMP] MGI:MGI:1913660 GO:GO:0005739 GO:GO:0045892
GO:GO:0006351 GO:GO:0044212 CTD:51001 eggNOG:NOG246142
HOGENOM:HOG000044443 HOVERGEN:HBG062577 KO:K15032 OrthoDB:EOG4CRM08
InterPro:IPR003690 Pfam:PF02536 SMART:SM00733 OMA:TRVAYLQ
EMBL:AK010525 EMBL:AK011934 EMBL:BC025173 EMBL:BC085282
IPI:IPI00109282 RefSeq:NP_079823.2 UniGene:Mm.347939
ProteinModelPortal:Q8R3J4 SMR:Q8R3J4 STRING:Q8R3J4 PRIDE:Q8R3J4
DNASU:66410 Ensembl:ENSMUST00000021991 GeneID:66410 KEGG:mmu:66410
UCSC:uc007qzw.2 GeneTree:ENSGT00390000005801 InParanoid:Q8R3J4
NextBio:321609 Bgee:Q8R3J4 CleanEx:MM_MTERFD1 Genevestigator:Q8R3J4
GermOnline:ENSMUSG00000021519 Uniprot:Q8R3J4
Length = 412
Score = 168 (64.2 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 81/364 (22%), Positives = 163/364 (44%)
Query: 142 IRNRRNTIKNSFDDTYYNSKDVDQRGKVMTRNATEN-RYQRLSEEIELDE-KWLPLLDYL 199
I+ R N F N ++ A + R L E+ L+E LP L L
Sbjct: 58 IKTYRTLFWNRFHSASTNRTKSSAESTLLPSVAEQQERILSLESELPLEEVDDLPPLSPL 117
Query: 200 STFGLKESHFIQMYERHMPSLQINVCSARER---LEYLLSVGVKQRDVRRILLRQPQILE 256
+ +E+ I Y +P + + L+ L+ +GV + + +L
Sbjct: 118 QSVSEEEAIQIAAYSP-LPISSFTLADYVDHSKTLQKLVQLGVDLSKIEKHPDAANLLLR 176
Query: 257 YTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKS 316
E +++ + FL LG+ ++++G + ++FS +EN LK V YL + ++
Sbjct: 177 LDFEKHIKQILLFLKDLGLEDNQLGPFLTKNYAIFSEDLEN-LKTRVAYL-QSKNFSKTD 234
Query: 317 LGKVVQLSPQVL---VQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGL 373
+ ++V+ +P +L V+R+D R F KEL +V + P+LL S++
Sbjct: 235 IARMVKNAPFLLSFSVERLD----NRLGFFQKELELNVKKTRDLVVRLPRLLTGSLEPVK 290
Query: 374 LPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMY 433
+ +G ++++I ++ + ++L+ + + L + Y+ N ++ + K+P
Sbjct: 291 ENMKVYHLELGFKHNEIQHMVIKIPKMLTAN-KRKLTEIFDYVHNVMNIPHHIIVKFPQL 349
Query: 434 LSLSLDQRIRPRHRFLVSLKKA---PKGPFPLSL--FIP-TDECFCQKWAGTTVDKYLAF 487
+ + +I+ RH FL L +A P P +SL F+ D+ FC++ A +++ + F
Sbjct: 350 FNTRVF-KIKERHLFLAYLGRAQYDPAKPNYVSLDKFVSFPDKIFCKEIAKASLNDFEKF 408
Query: 488 RQKL 491
+ L
Sbjct: 409 LKTL 412
>UNIPROTKB|F1RY61 [details] [associations]
symbol:MTERFD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0044212 "transcription regulatory
region DNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] GO:GO:0005739 GO:GO:0044212 CTD:51001 KO:K15032
InterPro:IPR003690 Pfam:PF02536 SMART:SM00733 OMA:TRVAYLQ
GeneTree:ENSGT00390000005801 EMBL:CU463146 RefSeq:XP_001929306.1
UniGene:Ssc.10844 Ensembl:ENSSSCT00000006681 GeneID:100152384
KEGG:ssc:100152384 Uniprot:F1RY61
Length = 414
Score = 167 (63.8 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 65/274 (23%), Positives = 133/274 (48%)
Query: 229 ERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATP 288
E L+ L+ +GV + + +L E +++ + FL LG+ ++++G +
Sbjct: 151 ETLQKLVLLGVDLSKIEKHPDAANLLLRLDFEKDIKQILLFLKDLGMEDNQLGTFLTKNY 210
Query: 289 SLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVL---VQRIDISWNTRCIFLSK 345
++FS +EN LK V YL + ++ + ++V+ +P +L V+R+D R F K
Sbjct: 211 AIFSEDLEN-LKTRVAYL-QSKNFSKADIAQMVRNAPFLLSFSVERLD----NRLGFFQK 264
Query: 346 ELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLR-SIGMRNSDILKVLRSLTQVLSLS 404
EL ++ + P+LL S++ + + R +G ++++I ++ + ++L+ +
Sbjct: 265 ELELSVKKTRDLIIRLPRLLTGSLEP-VKENMKVYRLELGFKHNEIQHMVTKIPKMLTAN 323
Query: 405 LEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKA---PKGPFP 461
+ L + Y+ N + + ++P + L +I+ RH FL L +A P P
Sbjct: 324 -KRKLTETFDYVHNVMRIPHHVIVRFPQVFNTRLF-KIKERHLFLAYLGRAQYDPAKPNY 381
Query: 462 LSL----FIPTDECFCQKWAGTTVDKYLAFRQKL 491
+SL +P DE FC++ A +V + F + L
Sbjct: 382 ISLDKLVSMP-DEIFCEEMAKASVQDFEKFLKTL 414
Score = 117 (46.2 bits), Expect = 0.00071, P = 0.00071
Identities = 36/139 (25%), Positives = 71/139 (51%)
Query: 228 RERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAAT 287
++ L +L +G++ + L + I +EN L++ VA+L S + I Q++
Sbjct: 186 KQILLFLKDLGMEDNQLGTFLTKNYAIFSEDLEN-LKTRVAYLQSKNFSKADIAQMVRNA 244
Query: 288 PSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRID-ISWNTRCIFLSKE 346
P L S+SVE L + + +E+ ++ K ++ P++L ++ + N + L E
Sbjct: 245 PFLLSFSVER-LDNRLGFFQKELELSVKKTRDLIIRLPRLLTGSLEPVKENMKVYRL--E 301
Query: 347 LGAPRDDVVKMVTKHPQLL 365
LG +++ MVTK P++L
Sbjct: 302 LGFKHNEIQHMVTKIPKML 320
>UNIPROTKB|F1P3M7 [details] [associations]
symbol:MTERFD1 "mTERF domain-containing protein 1,
mitochondrial" species:9031 "Gallus gallus" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0044212 "transcription regulatory
region DNA binding" evidence=IEA] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=IEA] GO:GO:0005739
GO:GO:0044212 IPI:IPI00591676 InterPro:IPR003690 Pfam:PF02536
SMART:SM00733 OMA:TRVAYLQ GeneTree:ENSGT00390000005801
EMBL:AADN02024909 PRIDE:F1P3M7 Ensembl:ENSGALT00000025772
Uniprot:F1P3M7
Length = 405
Score = 158 (60.7 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 62/267 (23%), Positives = 122/267 (45%)
Query: 229 ERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATP 288
E L L+ +GV V + +L E ++ + FL +GI ++++G + P
Sbjct: 142 ETLTKLVHLGVDLSQVEKRQKAGQLLLTLDFEKDITKILLFLKDVGIEDNQLGPFLTKNP 201
Query: 289 SLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELG 348
+ +E +L+ V YL + N + + ++V +P +L+ ++ + R F ELG
Sbjct: 202 YILGEDLE-ALETRVAYLKSKKFGNAE-ITQMVSRAPYLLLFSVE-RLDNRLGFFKNELG 258
Query: 349 APRDDVVKMVTKHPQLLHYSIDDGLLPRINFLR-SIGMRNSDILKVLRSLTQVLSLSLED 407
+V + P+LL ++ + + + G +++ ++ ++L+ S +
Sbjct: 259 LSVKKTKDLVIRFPRLLTGKLEP-VKENLQVCQVEFGFERNEVQQIAFKTPKILTAS-KK 316
Query: 408 NLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKA---PKGPFPLSL 464
L+ + YL N + LT++P + L RI+ RH FL+ L +A P P +SL
Sbjct: 317 RLRQTFDYLHNIMGIPHNMLTRFPQVFNSKL-LRIKERHMFLIFLGRAQYDPTKPSYISL 375
Query: 465 ----FIPTDECFCQKWAGTTVDKYLAF 487
+P DE FC + A ++ + F
Sbjct: 376 DQLVSLP-DEVFCTEIAKASMQDFEKF 401
>UNIPROTKB|Q5ZJC8 [details] [associations]
symbol:MTERFD1 "mTERF domain-containing protein 1,
mitochondrial" species:9031 "Gallus gallus" [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISS] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISS]
GO:GO:0005739 GO:GO:0045892 GO:GO:0006351 GO:GO:0044212
EMBL:AJ720506 IPI:IPI00591676 RefSeq:NP_001006348.1
UniGene:Gga.6457 PRIDE:Q5ZJC8 GeneID:420237 KEGG:gga:420237
CTD:51001 eggNOG:NOG246142 HOGENOM:HOG000044443 HOVERGEN:HBG062577
InParanoid:Q5ZJC8 KO:K15032 OrthoDB:EOG4CRM08 NextBio:20823185
InterPro:IPR003690 Pfam:PF02536 SMART:SM00733 Uniprot:Q5ZJC8
Length = 405
Score = 158 (60.7 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 62/267 (23%), Positives = 122/267 (45%)
Query: 229 ERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATP 288
E L L+ +GV V + +L E ++ + FL +GI ++++G + P
Sbjct: 142 ETLTKLVHLGVDLSQVEKRQKAGQLLLTLDFEKDITKILLFLKDVGIEDNQLGPFLTKNP 201
Query: 289 SLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELG 348
+ +E +L+ V YL + N + + ++V +P +L+ ++ + R F ELG
Sbjct: 202 YILGEELE-ALETRVAYLKSKKFGNAE-ITQMVSRAPYLLLFSVE-RLDNRLGFFKNELG 258
Query: 349 APRDDVVKMVTKHPQLLHYSIDDGLLPRINFLR-SIGMRNSDILKVLRSLTQVLSLSLED 407
+V + P+LL ++ + + + G +++ ++ ++L+ S +
Sbjct: 259 LSVKKTKDLVIRFPRLLTGKLEP-VKENLQVCQVEFGFERNEVQQIAFKTPKILTAS-KK 316
Query: 408 NLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKA---PKGPFPLSL 464
L+ + YL N + LT++P + L RI+ RH FL+ L +A P P +SL
Sbjct: 317 RLRQTFDYLHNIMGIPHNMLTRFPQVFNSKL-LRIKERHMFLIFLGRAQYDPTKPSYISL 375
Query: 465 ----FIPTDECFCQKWAGTTVDKYLAF 487
+P DE FC + A ++ + F
Sbjct: 376 DQLVSLP-DEVFCTEIAKASMQDFEKF 401
>FB|FBgn0037008 [details] [associations]
symbol:mTerf3 species:7227 "Drosophila melanogaster"
[GO:0006264 "mitochondrial DNA replication" evidence=IMP]
[GO:0006390 "transcription from mitochondrial promoter"
evidence=IMP] [GO:0032543 "mitochondrial translation" evidence=IMP]
GO:GO:0005739 EMBL:AE014296 GO:GO:0032543 KO:K15032
InterPro:IPR003690 Pfam:PF02536 SMART:SM00733 OMA:TRVAYLQ
GeneTree:ENSGT00390000005801 EMBL:AY051744 RefSeq:NP_649240.1
UniGene:Dm.7718 SMR:Q9VPD5 IntAct:Q9VPD5 MINT:MINT-743061
STRING:Q9VPD5 EnsemblMetazoa:FBtr0078215 GeneID:40279
KEGG:dme:Dmel_CG5047 UCSC:CG5047-RA CTD:40279 FlyBase:FBgn0037008
InParanoid:Q9VPD5 OrthoDB:EOG4GHX4W GenomeRNAi:40279 NextBio:817950
Uniprot:Q9VPD5
Length = 354
Score = 154 (59.3 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 52/250 (20%), Positives = 113/250 (45%)
Query: 214 ERHMPSLQINV-CSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLIS 272
E H+PS + + L+ LS+GV + R +L+ E N++ ++ FL+
Sbjct: 75 EAHVPSFNLAAYVNNSSTLQQFLSLGVDLHSIERRKGLGDFVLKLDFEKNVKPYITFLVD 134
Query: 273 LGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLV--- 329
G+ G++ P LF +++ L+ V YL + ++++ +++ +P L+
Sbjct: 135 QGVSPDDFGRMFTKNPLLFKEDLDD-LQTRVNYLKSK-RFSDEARQRILTQNPYWLMFST 192
Query: 330 QRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSD 389
+R+D R + KE D+ + T+ P + Y+++ +G +
Sbjct: 193 RRVD----RRLGYFQKEFKLSGHDLRLLATREPNAITYNMEHLRKSVFTLKEEMGFNAKE 248
Query: 390 ILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFL 449
+ ++ ++L + D+L +++Y+ ++ + + P L+ S + R+R RH FL
Sbjct: 249 LSDLVVRKPRLLMIP-PDDLVERFSYIHQDMGLPHAQIVQCPELLA-SREFRLRERHEFL 306
Query: 450 VSLKKAPKGP 459
L +A P
Sbjct: 307 KLLGRAQYDP 316
Score = 133 (51.9 bits), Expect = 9.1e-06, P = 9.1e-06
Identities = 66/268 (24%), Positives = 124/268 (46%)
Query: 134 QGAQE-QLDIRNRRNTIKNSFDDTYY--NSKDVDQRGKVMTRNATENRYQRLSEEI-ELD 189
+G++E LD RNR + SF+ Y NS + Q + + R + L + + +LD
Sbjct: 62 EGSKEVALDFRNREAHVP-SFNLAAYVNNSSTLQQFLSLGVDLHSIERRKGLGDFVLKLD 120
Query: 190 -EKWL-PLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRI 247
EK + P + +L G+ F +M+ ++ + ++ + R+ YL S +RI
Sbjct: 121 FEKNVKPYITFLVDQGVSPDDFGRMFTKNPLLFKEDLDDLQTRVNYLKSKRFSDEARQRI 180
Query: 248 LLRQPQILEYTVENNLESHVA-FLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYL 306
L + P L ++ ++ + F + + + P+ +Y++E+ L+ +V L
Sbjct: 181 LTQNPYWLMFSTRR-VDRRLGYFQKEFKLSGHDLRLLATREPNAITYNMEH-LRKSVFTL 238
Query: 307 VEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLH 366
EE+G N K L +V P++L+ D R ++ +++G P +V+ P+LL
Sbjct: 239 KEEMGFNAKELSDLVVRKPRLLMIPPD-DLVERFSYIHQDMGLPHAQIVQC----PELLA 293
Query: 367 YSIDDGLLPRINFLRSIGMRNSDILKVL 394
S + L R FL+ +G D K L
Sbjct: 294 -SREFRLRERHEFLKLLGRAQYDPQKDL 320
>UNIPROTKB|Q1LZE3 [details] [associations]
symbol:MTERFD1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0044212 "transcription regulatory
region DNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] GO:GO:0005739 GO:GO:0044212 CTD:51001
eggNOG:NOG246142 HOGENOM:HOG000044443 HOVERGEN:HBG062577 KO:K15032
OrthoDB:EOG4CRM08 InterPro:IPR003690 Pfam:PF02536 SMART:SM00733
OMA:TRVAYLQ GeneTree:ENSGT00390000005801 EMBL:DAAA02039445
EMBL:BC116050 IPI:IPI00697939 RefSeq:NP_001069349.1
UniGene:Bt.53018 Ensembl:ENSBTAT00000001994 GeneID:526138
KEGG:bta:526138 InParanoid:Q1LZE3 NextBio:20874312 Uniprot:Q1LZE3
Length = 417
Score = 150 (57.9 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 62/273 (22%), Positives = 125/273 (45%)
Query: 229 ERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATP 288
E L L+ +GV + + +L E +++ + L LGI ++++G +
Sbjct: 154 ETLRKLVLLGVDLSKIEKHPDAANLLLRLDFEKDIKQMLLLLKDLGIEDTQLGPFLTKNY 213
Query: 289 SLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVL---VQRIDISWNTRCIFLSK 345
++FS +EN LK V YL + ++ + ++V+ +P +L +R+D R F K
Sbjct: 214 AIFSEDLEN-LKTRVAYL-QSKNFSKADIAQMVRNAPFLLSFSAERLD----NRLGFFQK 267
Query: 346 ELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSL 405
EL +V + P+LL S++ F +G + ++I ++ + ++L+ +
Sbjct: 268 ELKLSVKKTRDLVIRLPRLLTGSLEPVKENMKVFQLELGFQQNEIQHMITKIPKMLTAN- 326
Query: 406 EDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKA---PKGPFPL 462
+ L + Y+ N + + ++P + L +++ RH FL L +A P P +
Sbjct: 327 KRKLTETFDYVHNVMRVPHHVIVRFPQVFNTRLF-KVKERHLFLAYLGRAQYDPTEPNYI 385
Query: 463 SL----FIPTDECFCQKWAGTTVDKYLAFRQKL 491
SL +P D FC+ A ++ + F + L
Sbjct: 386 SLDKLVSVP-DGIFCEGMAKASIQDFEKFLKTL 417
>TAIR|locus:2142763 [details] [associations]
symbol:AT5G07900 "AT5G07900" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0016020 "membrane" evidence=IDA] EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0016020 EMBL:AL133421 EMBL:AB005249
KO:K15032 InterPro:IPR003690 Pfam:PF02536 SMART:SM00733
eggNOG:NOG320618 HOGENOM:HOG000093133 UniGene:At.32655
UniGene:At.626 EMBL:AF370295 EMBL:AY063042 EMBL:AY086199
IPI:IPI00534486 PIR:T45615 RefSeq:NP_568185.1
ProteinModelPortal:Q9SD94 PaxDb:Q9SD94 PRIDE:Q9SD94 DNASU:830684
EnsemblPlants:AT5G07900.1 GeneID:830684 KEGG:ath:AT5G07900
TAIR:At5g07900 InParanoid:Q9SD94 OMA:HCMMLSE PhylomeDB:Q9SD94
ProtClustDB:CLSN2689534 ArrayExpress:Q9SD94 Genevestigator:Q9SD94
Uniprot:Q9SD94
Length = 405
Score = 106 (42.4 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 38/152 (25%), Positives = 68/152 (44%)
Query: 183 SEEIELDEKWLP--LLDYLSTFGLKESHFIQMYERHMPSLQINVCSAR-ERLEYLLSVGV 239
S ++ LD P +L+ L G + + ++ L N S +L + LS+GV
Sbjct: 90 SRKLLLDSPERPNTVLNLLRDHGFTTAQISSLVKKRPVLLLANAESVLLPKLSFFLSIGV 149
Query: 240 KQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSL 299
+ + R L P IL ++ N L FL S+ + KI + T +F +L
Sbjct: 150 SKSLLARTLASDPTILTRSLVNQLIPSYNFLKSVLDSDEKIVAALRRTTWVFLEDHTKNL 209
Query: 300 KPTVRYLVEEVGINEKSLGKVVQLSPQVLVQR 331
P + Y+ E G+ EK + ++ P+ ++Q+
Sbjct: 210 VPNINYMAE-TGVPEKCIKLLLTHFPEAVMQK 240
Score = 91 (37.1 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 29/134 (21%), Positives = 64/134 (47%)
Query: 231 LEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSL 290
L L G + ++ ++P +L E+ L ++F +S+G+ S + + +A+ P++
Sbjct: 105 LNLLRDHGFTTAQISSLVKKRPVLLLANAESVLLPKLSFFLSIGVSKSLLARTLASDPTI 164
Query: 291 FSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWN-TRCIFLSKELGA 349
+ S+ N L P+ +L + +EK + ++ + V ++ D + N I E G
Sbjct: 165 LTRSLVNQLIPSYNFLKSVLDSDEKIVA-ALRRTTWVFLE--DHTKNLVPNINYMAETGV 221
Query: 350 PRDDVVKMVTKHPQ 363
P + ++T P+
Sbjct: 222 PEKCIKLLLTHFPE 235
Score = 86 (35.3 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 28/96 (29%), Positives = 47/96 (48%)
Query: 384 GMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIR 443
G DI+ + + LS E + Y +NE++ +S+ + P+ L SL++RI
Sbjct: 290 GWSEDDIMCAFKKHPHCMMLS-ERKINRTMEYFVNEMNMAPRSIAQCPVVLFFSLEKRII 348
Query: 444 PR---HRFLVSLKKAPKGPFPL-SLFIPTDECFCQK 475
PR + LVS K + L SL +P ++ F +K
Sbjct: 349 PRCSVTKVLVS-NGLVKEDWSLTSLLVPVEKVFLEK 383
>MGI|MGI:1918240 [details] [associations]
symbol:Mterf "mitochondrial transcription termination
factor" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006353
"DNA-dependent transcription, termination" evidence=ISO]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006393 "termination of mitochondrial
transcription" evidence=ISO] [GO:0032392 "DNA geometric change"
evidence=ISO] [GO:0042645 "mitochondrial nucleoid" evidence=ISO]
MGI:MGI:1918240 GO:GO:0005739 GO:GO:0006355 GO:GO:0003690
GO:GO:0032392 InterPro:IPR003690 Pfam:PF02536 SMART:SM00733
eggNOG:NOG285349 KO:K15031 GeneTree:ENSGT00530000063817 CTD:7978
HOGENOM:HOG000252957 HOVERGEN:HBG052524 GO:GO:0006393 EMBL:AY726770
EMBL:BC038058 EMBL:BC051251 EMBL:BC082778 EMBL:BC094442
EMBL:AK049308 IPI:IPI00109525 RefSeq:NP_001013041.2
RefSeq:NP_742147.1 UniGene:Mm.489094 UniGene:Mm.99593
ProteinModelPortal:Q8CHZ9 SMR:Q8CHZ9 IntAct:Q8CHZ9 STRING:Q8CHZ9
PhosphoSite:Q8CHZ9 PRIDE:Q8CHZ9 Ensembl:ENSMUST00000044746
Ensembl:ENSMUST00000117463 GeneID:545725 KEGG:mmu:545725
UCSC:uc008why.1 InParanoid:Q8CHZ9 OrthoDB:EOG4TXBS6 NextBio:412932
Bgee:Q8CHZ9 CleanEx:MM_MTERF Genevestigator:Q8CHZ9
GermOnline:ENSMUSG00000040429 Uniprot:Q8CHZ9
Length = 379
Score = 135 (52.6 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 61/243 (25%), Positives = 111/243 (45%)
Query: 188 LDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLE-YLLSVGVKQRDVRR 246
L+E+ LL L T G+ I M R P + + + L+ +LLS G + +
Sbjct: 50 LEEEREDLLSNLVTMGVD----IDMARRRQPGVFNKAVTNEQELKLFLLSKGASDKVIGS 105
Query: 247 ILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVEN-SLKPTVRY 305
I+ R P+ + T E+ L + + +I I+ +P F S N +L+ +++
Sbjct: 106 IISRYPRAITRTPES-LSKRWDLWRKIMASDLEIVNILERSPESFFRSNNNLNLENNIKF 164
Query: 306 LVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGA------PRDDVVKMVT 359
L VG+ K L +++ +P+ +++ N + + +E G PRD V K+++
Sbjct: 165 LCS-VGLTHKCLCRLLTNAPRTFSNSLNL--NKQMVEFLQETGMSLGHNDPRDFVRKIIS 221
Query: 360 KHPQLLHYSIDDGLLPRINFLRS-IGMRNSDILKVLRSL-TQVLSLSLEDNLKPKYTYLI 417
K+P +L S + I FL+S + D+L ++ ++L LS D K YT +
Sbjct: 222 KNPSILIQSTKR-VKTNIEFLQSTFNLNKRDLLLLICGPGARILDLS-NDCTKKNYTNIR 279
Query: 418 NEL 420
L
Sbjct: 280 ERL 282
>TAIR|locus:2018057 [details] [associations]
symbol:AT1G62120 "AT1G62120" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005794
"Golgi apparatus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002684 GenomeReviews:CT485782_GR eggNOG:KOG1267
KO:K15032 InterPro:IPR003690 Pfam:PF02536 SMART:SM00733
HOGENOM:HOG000113939 ProtClustDB:CLSN2682053 EMBL:BT015077
EMBL:BT015902 IPI:IPI00545469 RefSeq:NP_176403.1 UniGene:At.49506
ProteinModelPortal:Q6DBE5 PRIDE:Q6DBE5 EnsemblPlants:AT1G62120.1
GeneID:842508 KEGG:ath:AT1G62120 TAIR:At1g62120 InParanoid:Q6DBE5
OMA:MYVRKHD PhylomeDB:Q6DBE5 Genevestigator:Q6DBE5 Uniprot:Q6DBE5
Length = 437
Score = 102 (41.0 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 38/146 (26%), Positives = 65/146 (44%)
Query: 345 KELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLS 404
K LG DDV M K P +L S + + + +G + L +++ Q + S
Sbjct: 271 KRLGLAVDDVWAMFKKWPNILTKS-EKKIENSVETFLGLGFSRDEFLMMVKRFPQCIGYS 329
Query: 405 LEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRH---RFLVS--LKKAPKGP 459
E +K K +L+ E++ ++++ P L SL++R PR + L+S L ++ P
Sbjct: 330 TE-LMKTKTEFLVTEMNWPLKAVASIPQVLGYSLEKRTVPRCNVIKVLISKGLLESELPP 388
Query: 460 FPLSLFIPTDECFCQKWAGTTVDKYL 485
S+ T E F + DK L
Sbjct: 389 IS-SVLTSTSEVFLYMYVRKHDDKQL 413
Score = 77 (32.2 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 28/122 (22%), Positives = 54/122 (44%)
Query: 231 LEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSL 290
L L S G + I+ P++L E +L + FL S+G +S++ + ++A P +
Sbjct: 92 LSLLRSHGFTDSQISNIIRTFPRLLILDAEKSLAPKLQFLQSIGASSSELTETVSAVPKI 151
Query: 291 FSYSVENSLKPTVRYLVEEVGINEKS-LGKVVQLSPQVLVQRIDISWNTRCIFLSKELGA 349
SL ++ + ++ S L K+ P+ Q I R + + +E+G
Sbjct: 152 LGKRKGKSLSRYYDFVKVIIEADKSSKLEKLCHSLPEGSKQENKI----RNLLVLREMGV 207
Query: 350 PR 351
P+
Sbjct: 208 PQ 209
>TAIR|locus:2036868 [details] [associations]
symbol:AT1G61980 "AT1G61980" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] [GO:0005739 "mitochondrion" evidence=IDA]
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005634
GO:GO:0009409 EMBL:AC004392 KO:K15032 InterPro:IPR003690
Pfam:PF02536 SMART:SM00733 UniGene:At.23835 HOGENOM:HOG000113939
ProtClustDB:CLSN2682053 EMBL:BT029746 IPI:IPI00542184 PIR:T02142
RefSeq:NP_176389.1 UniGene:At.36338 ProteinModelPortal:O80703
PaxDb:O80703 PRIDE:O80703 EnsemblPlants:AT1G61980.1 GeneID:842493
KEGG:ath:AT1G61980 TAIR:At1g61980 eggNOG:NOG251984
InParanoid:O80703 OMA:LIGSELP PhylomeDB:O80703
Genevestigator:O80703 Uniprot:O80703
Length = 418
Score = 118 (46.6 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 57/235 (24%), Positives = 103/235 (43%)
Query: 260 ENNLESHV---AFLISLGIPNSKIGQIIAA--TPSLFSYSVENSLKPTVRYLVEEVGINE 314
+ NLE+ + + L LG+P+ + ++ + P E SLK V E+G +
Sbjct: 183 QGNLENKIRNLSVLRELGMPHKLLFPLLISCDVPVFGKEKFEESLKKVV-----EMGF-D 236
Query: 315 KSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLL 374
S K V+ +VQR+ + K LG + V + + P L +S + +L
Sbjct: 237 PSTSKFVEAL--CVVQRLSDKNIEDKVNAYKRLGFDVEYVWTVFKRWPNFLTHS-EKKIL 293
Query: 375 PRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYL 434
I +G + +++ Q + LS E +K K +L+ +++ +++L P L
Sbjct: 294 NTIETFLGLGFSRDEFSVLIKRFPQGIGLSAE-MVKKKTEFLVKKMNWPLKALVSNPAVL 352
Query: 435 SLSLDQRIRPRHRFLVSL-KKAPKG---PFPLSLFIPTDECFCQKWAGTTVDKYL 485
SL++R PR + +L K G P +F+ TD+ F ++ DK L
Sbjct: 353 GYSLEKRTVPRGNVVQALISKGLIGSELPSISRVFVCTDQVFLNRYVKRHEDKQL 407
Score = 57 (25.1 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 34/144 (23%), Positives = 61/144 (42%)
Query: 128 RSGRSLQGAQEQLDIR---NRRNTIKNSFDDTYYN--SKDVDQRGKVMTRN-------AT 175
R GRSL Q+ +R + + + NSF S V ++GK T +
Sbjct: 6 RHGRSLVELQKWRHLRVLVQKASPLSNSFSSASAARLSPRVGRKGKSFTVSYLVDSLGLP 65
Query: 176 ENRYQRLSEEIELDEKWLP--LLDYLSTFGLKESHFIQMYERHMPSLQINVC--SARERL 231
+ + +S ++ ++K P +L+ L + G +S I P L + S +L
Sbjct: 66 KKLAESVSRKVSFEDKDNPDSVLNLLRSHGFTDSQ-ISTIVTDYPQLLVADAEKSLAPKL 124
Query: 232 EYLLSVGVKQRDVRRILLRQPQIL 255
++L S G ++ I+ P+IL
Sbjct: 125 QFLQSRGASSSELTEIVSTVPKIL 148
>TAIR|locus:2199612 [details] [associations]
symbol:AT1G21150 "AT1G21150" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002684 GenomeReviews:CT485782_GR KO:K15032
InterPro:IPR003690 Pfam:PF02536 SMART:SM00733 EMBL:AC012190
IPI:IPI00537251 RefSeq:NP_173539.1 UniGene:At.66877
ProteinModelPortal:Q3ED83 PaxDb:Q3ED83 PRIDE:Q3ED83
EnsemblPlants:AT1G21150.1 GeneID:838711 KEGG:ath:AT1G21150
TAIR:At1g21150 eggNOG:NOG266402 HOGENOM:HOG000093133
InParanoid:Q3ED83 OMA:LIPCYDS PhylomeDB:Q3ED83
ProtClustDB:CLSN2912662 Genevestigator:Q3ED83 Uniprot:Q3ED83
Length = 390
Score = 128 (50.1 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 48/170 (28%), Positives = 82/170 (48%)
Query: 265 SHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKP-----TVRYLVEEVGINEKSLGK 319
S V +++LG +I + + + + S ++E KP TV YLV+ G++ +S K
Sbjct: 18 STVRRIVNLGFLVGRI-RTLCSVSQVKSENLEKQ-KPCLESFTVSYLVDSCGLSLES-AK 74
Query: 320 VVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINF 379
S V+ + + L K+ G D + ++ P++L S +D + P++ F
Sbjct: 75 ----SNSRFVKLVSSKKPDSVLALFKDHGFTNDQITSVIKSFPRVLSLSPEDVISPKLMF 130
Query: 380 LRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTK 429
SIG SD K++ S ++LS SL L P Y L + L E +S+ K
Sbjct: 131 FSSIGFSTSDTAKMISSSPKMLSYSLHKRLIPCYDSLKSILVEE-ESVVK 179
>TAIR|locus:2172798 [details] [associations]
symbol:AT5G23930 "AT5G23930" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:AB005244
KO:K15032 InterPro:IPR003690 Pfam:PF02536 SMART:SM00733
HOGENOM:HOG000113939 ProtClustDB:CLSN2682053 IPI:IPI00546759
RefSeq:NP_197781.1 UniGene:At.65544 ProteinModelPortal:Q9FF87
PaxDb:Q9FF87 PRIDE:Q9FF87 ProMEX:Q9FF87 EnsemblPlants:AT5G23930.1
GeneID:832458 KEGG:ath:AT5G23930 TAIR:At5g23930 eggNOG:NOG273152
InParanoid:Q9FF87 OMA:MKANFDE PhylomeDB:Q9FF87
Genevestigator:Q9FF87 Uniprot:Q9FF87
Length = 457
Score = 125 (49.1 bits), Expect = 0.00011, P = 0.00011
Identities = 45/196 (22%), Positives = 94/196 (47%)
Query: 229 ERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATP 288
E++ + +G+ +V + + P L+Y+ E N+ L +G+ ++ ++ P
Sbjct: 257 EKVNAYIRLGLSVNEVWAVFKKWPFSLKYS-EKNIIQKFETLKRVGLTKEEVCLVVKKYP 315
Query: 289 SLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELG 348
S E +K +L E+G + + +++ PQ + D S + FL K +G
Sbjct: 316 ECVGTSEEKIVKSVKTFL--ELGFTKDEVLMIIKRHPQCIGLAAD-SVKKKTEFLVKTMG 372
Query: 349 APRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDN 408
P +K+V P +L +S++ +LPR N ++++ M N ++ + +++ VL+ +
Sbjct: 373 WP----LKVVASTPIVLGFSLEKFVLPRCNVIKAL-MSNG-LIGEMPAISSVLT-----S 421
Query: 409 LKPKYTYLINELHNEV 424
K K+ L E H +V
Sbjct: 422 PKLKFLKLFVEKHQDV 437
Score = 102 (41.0 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 38/154 (24%), Positives = 75/154 (48%)
Query: 260 ENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGK 319
+ +E V I LG+ +++ + P YS +N ++ ++ VG+ ++ +
Sbjct: 252 DKTIEEKVNAYIRLGLSVNEVWAVFKKWPFSLKYSEKNIIQKFET--LKRVGLTKEEVCL 309
Query: 320 VVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINF 379
VV+ P+ + + + FL ELG +D+V+ ++ +HPQ + + D + + F
Sbjct: 310 VVKKYPECVGTSEEKIVKSVKTFL--ELGFTKDEVLMIIKRHPQCIGLAADS-VKKKTEF 366
Query: 380 L-RSIGMRNSDILKVLRSLTQVLSLSLEDNLKPK 412
L +++G LKV+ S VL SLE + P+
Sbjct: 367 LVKTMGWP----LKVVASTPIVLGFSLEKFVLPR 396
Score = 60 (26.2 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 21/81 (25%), Positives = 39/81 (48%)
Query: 180 QRLSEEIELDEKWLP--LLDYLSTFGLKESHF---IQMYERHMPSLQINVCSARERLEYL 234
+ +S + DEK P +L L ++G K+S I Y R + ++ + R +L +L
Sbjct: 73 ESISMKANFDEKGNPDSVLKLLRSYGFKDSQISSIISTYPRFL--IENPEKTLRAKLHFL 130
Query: 235 LSVGVKQRDVRRILLRQPQIL 255
G ++ I+ + P+IL
Sbjct: 131 KLNGASSSELTEIVSKVPKIL 151
>UNIPROTKB|Q99551 [details] [associations]
symbol:MTERF "Transcription termination factor,
mitochondrial" species:9606 "Homo sapiens" [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0006353
"DNA-dependent transcription, termination" evidence=IDA]
[GO:0006393 "termination of mitochondrial transcription"
evidence=IDA;TAS] [GO:0032392 "DNA geometric change" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=TAS] [GO:0005759
"mitochondrial matrix" evidence=TAS] [GO:0006390 "transcription
from mitochondrial promoter" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0042645 "mitochondrial nucleoid"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 GO:GO:0006355 GO:GO:0042645 EMBL:CH471091
EMBL:CH236949 GO:GO:0003690 Reactome:REACT_1788 GO:GO:0032392
InterPro:IPR003690 Pfam:PF02536 SMART:SM00733 KO:K15031 EMBL:Y09615
EMBL:AK222730 EMBL:AC003086 EMBL:BC000965 EMBL:BC108648
EMBL:BC130389 EMBL:BC130391 IPI:IPI00016095 RefSeq:NP_008911.1
UniGene:Hs.532216 PDB:3MVA PDB:3MVB PDB:3N6S PDB:3N7Q PDBsum:3MVA
PDBsum:3MVB PDBsum:3N6S PDBsum:3N7Q ProteinModelPortal:Q99551
SMR:Q99551 IntAct:Q99551 STRING:Q99551 PhosphoSite:Q99551
DMDM:12644536 PaxDb:Q99551 PRIDE:Q99551 DNASU:7978
Ensembl:ENST00000351870 GeneID:7978 KEGG:hsa:7978 UCSC:uc003ulc.1
CTD:7978 GeneCards:GC07M091500 HGNC:HGNC:21463 HPA:HPA044894
MIM:602318 neXtProt:NX_Q99551 PharmGKB:PA142671308 eggNOG:NOG328956
HOGENOM:HOG000252957 HOVERGEN:HBG052524 InParanoid:Q99551
OMA:GLTRKCL PhylomeDB:Q99551 ChiTaRS:MTERF EvolutionaryTrace:Q99551
GenomeRNAi:7978 NextBio:30500 ArrayExpress:Q99551 Bgee:Q99551
CleanEx:HS_MTERF Genevestigator:Q99551 GermOnline:ENSG00000127989
GO:GO:0006393 Uniprot:Q99551
Length = 399
Score = 124 (48.7 bits), Expect = 0.00011, P = 0.00011
Identities = 77/294 (26%), Positives = 130/294 (44%)
Query: 170 MTRNATENRYQRLSEEI------ELDEKWLP---LLDYLSTFGLKESHFIQMYERHMPSL 220
MTR + EN ++ +S + D + L LL L T G+ I M + P +
Sbjct: 41 MTRFSAENIFKSVSFRLFGVKCHNTDSEPLKNEDLLKNLLTMGVD----IDMARKRQPGV 96
Query: 221 QINVCSARERLE-YLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSK 279
+ + + L+ +LLS G + + I+ R P+ + T EN L + + +
Sbjct: 97 FHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPEN-LSKRWDLWRKIVTSDLE 155
Query: 280 IGQIIAATPSLFSYSVEN-SLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNT 338
I I+ +P F S N +L+ +++L VG+ K L +++ +P+ +D+ N
Sbjct: 156 IVNILERSPESFFRSNNNLNLENNIKFLYS-VGLTRKCLCRLLTNAPRTFSNSLDL--NK 212
Query: 339 RCI-FLSK---ELGA--PRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILK 392
+ + FL LG P D V K++ K+P +L S + I FLRS NS+ L
Sbjct: 213 QMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQSTKR-VKANIEFLRSTFNLNSEELL 271
Query: 393 VL--RSLTQVLSLSLEDNLKPKYTYLINELHN------EVQSLT-KYPMYLSLS 437
VL ++L LS D + Y + +L + EVQ YP + L+
Sbjct: 272 VLICGPGAEILDLS-NDYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLA 324
>TAIR|locus:2170209 [details] [associations]
symbol:AT5G06810 "AT5G06810" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0008150 "biological_process"
evidence=ND] [GO:0009536 "plastid" evidence=IDA] GO:GO:0005739
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009536 EMBL:AP002032
InterPro:IPR003690 Pfam:PF02536 SMART:SM00733 IPI:IPI00534795
RefSeq:NP_196299.1 UniGene:At.32810 ProteinModelPortal:Q9FG25
PaxDb:Q9FG25 PRIDE:Q9FG25 EnsemblPlants:AT5G06810.1 GeneID:830572
KEGG:ath:AT5G06810 TAIR:At5g06810 eggNOG:NOG311358
HOGENOM:HOG000152451 InParanoid:Q9FG25 OMA:CDILESK PhylomeDB:Q9FG25
ProtClustDB:CLSN2916533 Genevestigator:Q9FG25 Uniprot:Q9FG25
Length = 1141
Score = 95 (38.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 33/126 (26%), Positives = 61/126 (48%)
Query: 373 LLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPM 432
L R N L S G+ D+ ++++ +L+ + D L+ K YL+ EL + +L +P
Sbjct: 1017 LRERFNVLVSFGLTEKDVKDMVKACPSILTQAC-DILESKVNYLVKELGYPLSTLVTFPT 1075
Query: 433 YLSLSLDQRIRPRHRFLVSLKKAPKGPFPL---SLFIPTDECFCQKWAGTTVD--KYLAF 487
L +L QR++ R L+ K L ++ + +D+ F ++ D K+L
Sbjct: 1076 CLKYTL-QRMKLRFSMFSWLQDRGKADPKLQVSTILVCSDKFFATRFVNRHPDGPKHLED 1134
Query: 488 RQKLLL 493
+KLL+
Sbjct: 1135 LKKLLV 1140
Score = 84 (34.6 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 31/120 (25%), Positives = 59/120 (49%)
Query: 163 VDQRGKVMTRNATENRYQRL-SEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQ 221
+ + + M + ++ Q L + ++++ K + +L G KE+ + E M + +
Sbjct: 398 IQENPEEMKKWTMGSKIQPLPATNVDIESKSMKT-QFLLDLGYKENS--EEMETAMKNFR 454
Query: 222 INVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLIS-LGIPNSKI 280
RER L+S+G ++DV+ ++ P +L T + LES V +LI LG P S +
Sbjct: 455 GKGSELRERFNVLVSLGFTKKDVKDMVKACPTMLSQTCDI-LESKVNYLIKELGYPLSTL 513
Score = 76 (31.8 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 20/96 (20%), Positives = 47/96 (48%)
Query: 217 MPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENN-LESHVAFLISLGI 275
+P+ +++ S + ++LL +G K+ + + + + + L L+SLG
Sbjct: 417 LPATNVDIESKSMKTQFLLDLGYKENSEEM----ETAMKNFRGKGSELRERFNVLVSLGF 472
Query: 276 PNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVG 311
+ ++ A P++ S + + L+ V YL++E+G
Sbjct: 473 TKKDVKDMVKACPTMLSQTCD-ILESKVNYLIKELG 507
>RGD|621318 [details] [associations]
symbol:Mterf "mitochondrial transcription termination factor"
species:10116 "Rattus norvegicus" [GO:0003690 "double-stranded DNA
binding" evidence=ISO;ISS] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0006353 "DNA-dependent transcription,
termination" evidence=ISO;ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006393
"termination of mitochondrial transcription" evidence=ISO;ISS]
[GO:0032392 "DNA geometric change" evidence=ISO;ISS] [GO:0042645
"mitochondrial nucleoid" evidence=ISO] RGD:621318 GO:GO:0005739
GO:GO:0006355 GO:GO:0003690 GO:GO:0032392 InterPro:IPR003690
Pfam:PF02536 SMART:SM00733 KO:K15031 CTD:7978 HOGENOM:HOG000252957
HOVERGEN:HBG052524 GO:GO:0006393 OrthoDB:EOG4TXBS6 EMBL:AJ292524
IPI:IPI00189117 RefSeq:NP_445951.1 UniGene:Rn.64629 PRIDE:Q9EPI8
GeneID:85261 KEGG:rno:85261 UCSC:RGD:621318 eggNOG:NOG320618
InParanoid:Q9EPI8 NextBio:617388 Genevestigator:Q9EPI8
GermOnline:ENSRNOG00000007899 Uniprot:Q9EPI8
Length = 374
Score = 123 (48.4 bits), Expect = 0.00013, P = 0.00013
Identities = 57/236 (24%), Positives = 107/236 (45%)
Query: 195 LLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLE-YLLSVGVKQRDVRRILLRQPQ 253
LL+ L T G+ + M R P + + + L+ +LLS G + + I+ R P+
Sbjct: 52 LLNNLLTMGVD----VDMARRRQPGVFNKAVTNEQELKMFLLSKGASDKVIGSIISRYPR 107
Query: 254 ILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVEN-SLKPTVRYLVEEVGI 312
+ T E+ L + + +I I+ +P F S N +L+ +++L VG+
Sbjct: 108 AITRTPES-LSKRWDLWREIMASDLEIVNILERSPESFFRSNNNLNLENNIKFLCS-VGL 165
Query: 313 NEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGA------PRDDVVKMVTKHPQLLH 366
K L +++ +P+ +++ N + + +E G P D V K+++K+P +L
Sbjct: 166 THKCLCRLLTSAPRTFSNSLNL--NKQMVEFLQETGISLGHNNPTDFVRKIISKNPSILI 223
Query: 367 YSIDDGLLPRINFLRS-IGMRNSDILKVLRSL-TQVLSLSLEDNLKPKYTYLINEL 420
S + I FL+S + D+L ++ ++L LS D K YT + L
Sbjct: 224 QSTKR-VKTNIEFLQSTFNLDKEDLLLLICGPGARILDLS-NDCTKRNYTNIKKRL 277
Score = 120 (47.3 bits), Expect = 0.00028, P = 0.00028
Identities = 57/231 (24%), Positives = 101/231 (43%)
Query: 226 SARERLEYLLSVGVKQRDVRRILLRQPQILEYTVEN-NLESHVAFLISLGIPNSKIGQII 284
S +R + + ++ IL R P+ + N NLE+++ FL S+G+ + + +++
Sbjct: 115 SLSKRWDLWREIMASDLEIVNILERSPESFFRSNNNLNLENNIKFLCSVGLTHKCLCRLL 174
Query: 285 AATPSLFSYSVENSLKPTVRYLVE---EVGINEKS--LGKVVQLSPQVLVQRIDISWNTR 339
+ P FS S+ N K V +L E +G N + + K++ +P +L+Q T
Sbjct: 175 TSAPRTFSNSL-NLNKQMVEFLQETGISLGHNNPTDFVRKIISKNPSILIQSTK-RVKTN 232
Query: 340 CIFLSKELGAPRDDVVKMVT-KHPQLLHYSIDDGLLPRINF---LRSIGMRNSDILKVLR 395
FL ++D++ ++ ++L S D N L S+G ++ K +
Sbjct: 233 IEFLQSTFNLDKEDLLLLICGPGARILDLSNDCTKRNYTNIKKRLLSLGCTEEEVQKFVL 292
Query: 396 SLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLS---LDQRIR 443
S ++ LS E K L+ E + Q L P L S L RIR
Sbjct: 293 SYLNMIFLS-EKKFNDKIDCLLEEKISTSQILEN-PRVLDSSIHTLKTRIR 341
>TAIR|locus:2036878 [details] [associations]
symbol:AT1G61990 "AT1G61990" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0005739 "mitochondrion"
evidence=IDA] EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739
EMBL:AC004392 KO:K15032 InterPro:IPR003690 Pfam:PF02536
SMART:SM00733 HOGENOM:HOG000113939 ProtClustDB:CLSN2682053
EMBL:AF462848 EMBL:BT000861 IPI:IPI00547257 PIR:T02143
RefSeq:NP_176390.1 UniGene:At.28258 UniGene:At.74237
UniGene:At.74283 ProteinModelPortal:O80704 SMR:O80704 PaxDb:O80704
PRIDE:O80704 EnsemblPlants:AT1G61990.1 GeneID:842494
KEGG:ath:AT1G61990 TAIR:At1g61990 eggNOG:NOG240230
InParanoid:O80704 OMA:QMSEKTI PhylomeDB:O80704
Genevestigator:O80704 Uniprot:O80704
Length = 414
Score = 118 (46.6 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 42/164 (25%), Positives = 78/164 (47%)
Query: 260 ENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGK 319
E +E V SLG + +I TPS+ S + LK +L ++G +
Sbjct: 247 EKTIEEKVVVFRSLGFTVDDVWEIFKKTPSVLKVSKKKILKSAETFL--DLGYSRAEFLM 304
Query: 320 VVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINF 379
+V+ P + ++ S + FL K++ PR+ +V HPQ+ YS++ ++PR N
Sbjct: 305 MVKRYPPCIEYSVE-SVKKKNEFLVKKMKWPRNALVL----HPQVFGYSMEKRIIPRCNI 359
Query: 380 LRSIGMRNSDILKV---LRSLTQVLSLSLEDNLKPKYTYLINEL 420
L ++ + +L+ L +++ VLS + ++ +Y NEL
Sbjct: 360 LEAL--LSKGLLRKGSELPAVSSVLSCT-DEGFLDRYVMKHNEL 400
Score = 45 (20.9 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 17/79 (21%), Positives = 35/79 (44%)
Query: 180 QRLSEEIELDEKWLP--LLDYLSTFGLKESHFIQMYERHMPSLQINVCSARER-LEYLLS 236
+ +S ++ ++K P +L ++G +S + + L + A R L+ L S
Sbjct: 70 ESISRKVSFEDKVNPDSVLSLFRSYGFTDSQISTIITDYPLLLVADAKKALGRKLQILQS 129
Query: 237 VGVKQRDVRRILLRQPQIL 255
G ++ I+ P+IL
Sbjct: 130 RGASSSEITEIVSTVPRIL 148
>TAIR|locus:2018042 [details] [associations]
symbol:AT1G62110 "AT1G62110" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002684 GenomeReviews:CT485782_GR eggNOG:KOG1267
KO:K15032 InterPro:IPR003690 Pfam:PF02536 SMART:SM00733
HOGENOM:HOG000113939 ProtClustDB:CLSN2682053 EMBL:BT005380
EMBL:AK117829 IPI:IPI00522637 RefSeq:NP_176402.2 UniGene:At.36313
ProteinModelPortal:Q8GY68 PaxDb:Q8GY68 PRIDE:Q8GY68
EnsemblPlants:AT1G62110.1 GeneID:842507 KEGG:ath:AT1G62110
TAIR:At1g62110 InParanoid:Q8GY68 OMA:QFIRISE PhylomeDB:Q8GY68
Genevestigator:Q8GY68 Uniprot:Q8GY68
Length = 462
Score = 121 (47.7 bits), Expect = 0.00031, P = 0.00031
Identities = 58/263 (22%), Positives = 115/263 (43%)
Query: 234 LLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGI-PN-SKIGQIIAATPSLF 291
L +GV Q+ + +L+ Q + + N E + ++ +G P SK Q + A
Sbjct: 198 LRDLGVPQKLLFSLLISDAQPV--CGKENFEESLKKVVEMGFDPTTSKFVQALRAVYRFT 255
Query: 292 SYSVENSLK--PTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGA 349
++E + + VE+V K + S + + Q I+ K+ G
Sbjct: 256 DKTIEERVNVYKGFGFAVEDVWAMFKKCPYFLNSSEKKIGQTIETL---------KKCGL 306
Query: 350 PRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNL 409
D+V+ ++ K+PQ + S + +L I +G + + +++ Q L LS E +
Sbjct: 307 LEDEVISVLKKYPQCIGTS-EQKILNSIEIFLGLGFSRDEFITMVKRFPQCLILSAE-TV 364
Query: 410 KPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSL-KKAPKGPF-----PLS 463
K K +++ +++ ++ + P L +L++R PR + +L K G P+S
Sbjct: 365 KKKIEFVVKKMNWPLKDVVSNPTVLGYNLEKRTVPRCNVIEALMSKRLLGDTGSELPPMS 424
Query: 464 -LFIPTDECFCQKWAGTTVDKYL 485
+ + TDE F +++ DK L
Sbjct: 425 SVLVCTDELFLKRYVRNHGDKEL 447
>UNIPROTKB|G3MZI9 [details] [associations]
symbol:MTERF "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0042645 "mitochondrial nucleoid" evidence=IEA]
[GO:0032392 "DNA geometric change" evidence=IEA] [GO:0006393
"termination of mitochondrial transcription" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IEA]
GO:GO:0042645 GO:GO:0003690 GO:GO:0032392 InterPro:IPR003690
Pfam:PF02536 SMART:SM00733 GeneTree:ENSGT00530000063817 OMA:GLTRKCL
GO:GO:0006393 EMBL:DAAA02009756 Ensembl:ENSBTAT00000063305
Uniprot:G3MZI9
Length = 362
Score = 118 (46.6 bits), Expect = 0.00044, P = 0.00044
Identities = 61/269 (22%), Positives = 117/269 (43%)
Query: 195 LLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQI 254
L +L + G + + R+ ++ S R + + ++ IL R P+
Sbjct: 70 LQTFLLSKGASKEVIASIISRYPRAMTRTPESLSNRWDLWRRIVTSDLEIVNILERSPES 129
Query: 255 LEYTVEN-NLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVE---EV 310
+ +N NLE+++ FL S+G+ + + +++ P FS S+ N K V +L E +
Sbjct: 130 FFRSSDNLNLENNIKFLYSVGLTHKDLCRLLTNAPRTFSNSL-NLNKQMVEFLQEICLSL 188
Query: 311 GINEKS--LGKVVQLSPQVLVQRID-ISWNTRCIFLSKELGAPRDDVVKMVT-KHPQLLH 366
G N + + K++ +P +L+Q I N FL ++++ ++ ++L
Sbjct: 189 GHNGPTDFVRKIIFKNPFILIQSTKRIKANIE--FLQSTFCLTNEELLSLICGPGAKILD 246
Query: 367 YSIDDGLLPRINF---LRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNE 423
S D N L S+G +I K + S ++ L E K LI E N
Sbjct: 247 LSSDCMRRSYRNIKDKLSSLGCTAKEIRKFVLSYPDMIFLG-EKKFNDKIDCLIEEKVN- 304
Query: 424 VQSLTKYPMYLSLSLDQRIRPRHRFLVSL 452
+ + K+P L S+ ++ R + LV++
Sbjct: 305 ISQIIKHPRILDSSIST-LKSRIKELVNV 332
>TAIR|locus:2103291 [details] [associations]
symbol:SHOT1 "AT3G60400" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0005739 "mitochondrion"
evidence=IDA] GO:GO:0005739 EMBL:CP002686 GenomeReviews:BA000014_GR
EMBL:AL138646 InterPro:IPR003690 Pfam:PF02536 SMART:SM00733
IPI:IPI00545820 PIR:T47851 RefSeq:NP_191599.1 UniGene:At.34455
ProteinModelPortal:Q9M219 SMR:Q9M219 PRIDE:Q9M219
EnsemblPlants:AT3G60400.1 GeneID:825211 KEGG:ath:AT3G60400
TAIR:At3g60400 eggNOG:NOG285291 HOGENOM:HOG000242270
InParanoid:Q9M219 OMA:ESIGIDY PhylomeDB:Q9M219
ProtClustDB:CLSN2685047 Genevestigator:Q9M219 Uniprot:Q9M219
Length = 558
Score = 119 (46.9 bits), Expect = 0.00067, P = 0.00067
Identities = 53/235 (22%), Positives = 99/235 (42%)
Query: 233 YLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFS 292
Y GV + D ++LR P I+ + +E + S L G+ ++ + P +F
Sbjct: 273 YFCRFGVSKEDAALLILRNPAIMNFDLEKPVISVTGMLKHFGLRQDEVDAVAQKYPYVFG 332
Query: 293 YSVENSLKPTVRY--LVEEV-GI----NEKSLGKVVQLSPQVLVQR-----IDISWNTRC 340
+ +L +R L E + I N L + P ++R ++ N+R
Sbjct: 333 RNQLKNLPYVLRAIDLHERIFDILKNGNHHLLASYTLMDPDEDLEREYQEGLEELQNSRT 392
Query: 341 -------IFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKV 393
+ E+G + + V +H +H + + L R L + G+ S I +
Sbjct: 393 KRHNIQKLDFLHEIGFGENGITMKVLQH---VHGTAVE-LHDRFQILLNSGIIFSKICML 448
Query: 394 LRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRF 448
+RS ++L+ +++ K +L E+ + + L +P YL L+ RI PR RF
Sbjct: 449 IRSAPKILNQK-PHSIQDKLRFLCGEMGDSLDYLEVFPAYLCFDLENRISPRFRF 502
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.387 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 504 475 0.00078 119 3 11 22 0.38 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 37
No. of states in DFA: 613 (65 KB)
Total size of DFA: 268 KB (2143 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 40.72u 0.19s 40.91t Elapsed: 00:00:03
Total cpu time: 40.74u 0.19s 40.93t Elapsed: 00:00:03
Start: Sat May 11 03:23:36 2013 End: Sat May 11 03:23:39 2013