BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010686
(504 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6P6Q6|MTER1_RAT mTERF domain-containing protein 1, mitochondrial OS=Rattus
norvegicus GN=Mterfd1 PE=2 SV=1
Length = 409
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 135/278 (48%), Gaps = 29/278 (10%)
Query: 229 ERLEYLLSVGV------KQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQ 282
E L+ L+ +GV K DV +LLR E +++ + FL LG+ ++++G
Sbjct: 146 ETLQKLVQLGVDLSKIEKHPDVANLLLR------LNFEKDIKQILLFLKDLGLEDNQLGP 199
Query: 283 IIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVL---VQRIDISWNTR 339
+ ++FS +EN LK V YL + ++ + +V+ +P +L V+R+D R
Sbjct: 200 FLTKNYAIFSEDLEN-LKTRVAYL-QSKNFSKTDIACMVKNAPFLLSFSVERLD----NR 253
Query: 340 CIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQ 399
F KEL +V + P+LL S++ + +G ++++I ++ + +
Sbjct: 254 LGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMVTKIPK 313
Query: 400 VLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKA---P 456
+L+ + + L + Y+ N ++ + K+P + + +I+ RH FL L KA P
Sbjct: 314 MLTAN-KRKLTETFDYVHNVMNIPHHIIVKFPQVFNTRV-FKIKERHLFLAYLGKAQYDP 371
Query: 457 KGPFPLSL--FIP-TDECFCQKWAGTTVDKYLAFRQKL 491
P +SL F+ DE FC++ A +V+ + F + L
Sbjct: 372 AKPNYVSLDKFVSFPDEVFCKEIAKASVNDFEKFLKTL 409
>sp|Q96E29|MTER1_HUMAN mTERF domain-containing protein 1, mitochondrial OS=Homo sapiens
GN=MTERFD1 PE=1 SV=2
Length = 417
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 132/277 (47%), Gaps = 27/277 (9%)
Query: 229 ERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATP 288
E L+ L+ +GV + + +L E +++ + FL +GI ++++G +
Sbjct: 154 ETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNH 213
Query: 289 SLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVL---VQRIDISWNTRCIFLSK 345
++FS +EN LK V YL + ++ + ++V+ +P +L V+R+D R F K
Sbjct: 214 AIFSEDLEN-LKTRVAYLHSK-NFSKADVAQMVRKAPFLLNFSVERLD----NRLGFFQK 267
Query: 346 ELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSL 405
EL +V + P+LL S++ + +G ++++I ++ + ++L+ +
Sbjct: 268 ELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTAN- 326
Query: 406 EDNLKPKYTYLINELHNEV----QSLTKYPMYLSLSLDQRIRPRHRFLVSLKKA---PKG 458
K K T + +HN + + K+P + L +++ RH FL L +A P
Sbjct: 327 ----KMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAK 381
Query: 459 PFPLSL----FIPTDECFCQKWAGTTVDKYLAFRQKL 491
P +SL IP DE FC++ A +V + F + L
Sbjct: 382 PNYISLDKLVSIP-DEIFCEEIAKASVQDFEKFLKTL 417
>sp|Q5ZJC8|MTER1_CHICK mTERF domain-containing protein 1, mitochondrial OS=Gallus gallus
GN=MTERFD1 PE=2 SV=1
Length = 405
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 115/265 (43%), Gaps = 51/265 (19%)
Query: 231 LEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSL 290
L +L VG++ + L + P IL +E LE+ VA+L S N++I Q+++ P L
Sbjct: 180 LLFLKDVGIEDNQLGPFLTKNPYILGEELEA-LETRVAYLKSKKFGNAEITQMVSRAPYL 238
Query: 291 FSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRID-ISWNTRCIFLSKELGA 349
+SVE L + + E+G++ K +V P++L +++ + N + E G
Sbjct: 239 LLFSVER-LDNRLGFFKNELGLSVKKTKDLVIRFPRLLTGKLEPVKENLQVC--QVEFGF 295
Query: 350 PRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNL 409
R++V ++ K P++L S + L
Sbjct: 296 ERNEVQQIAFKTPKILTAS-------------------------------------KKRL 318
Query: 410 KPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKA---PKGPFPLSL-- 464
+ + YL N + LT++P + L RI+ RH FL+ L +A P P +SL
Sbjct: 319 RQTFDYLHNIMGIPHNMLTRFPQVFNSKL-LRIKERHMFLIFLGRAQYDPTKPSYISLDQ 377
Query: 465 --FIPTDECFCQKWAGTTVDKYLAF 487
+P DE FC + A ++ + F
Sbjct: 378 LVSLP-DEVFCTEIAKASMQDFEKF 401
>sp|Q8R3J4|MTER1_MOUSE mTERF domain-containing protein 1, mitochondrial OS=Mus musculus
GN=Mterfd1 PE=2 SV=1
Length = 412
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 69/280 (24%), Positives = 138/280 (49%), Gaps = 37/280 (13%)
Query: 231 LEYLLSVGV------KQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQII 284
L+ L+ +GV K D +LLR L++ E +++ + FL LG+ ++++G +
Sbjct: 151 LQKLVQLGVDLSKIEKHPDAANLLLR----LDF--EKHIKQILLFLKDLGLEDNQLGPFL 204
Query: 285 AATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVL---VQRIDISWNTRCI 341
++FS +EN LK V YL + ++ + ++V+ +P +L V+R+D R
Sbjct: 205 TKNYAIFSEDLEN-LKTRVAYL-QSKNFSKTDIARMVKNAPFLLSFSVERLD----NRLG 258
Query: 342 FLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVL 401
F KEL +V + P+LL S++ + +G ++++I ++ + ++L
Sbjct: 259 FFQKELELNVKKTRDLVVRLPRLLTGSLEPVKENMKVYHLELGFKHNEIQHMVIKIPKML 318
Query: 402 SLSLEDNLKPKYTYLINELHNEV----QSLTKYPMYLSLSLDQRIRPRHRFLVSLKKA-- 455
+ + K K T + + +HN + + K+P + + +I+ RH FL L +A
Sbjct: 319 TAN-----KRKLTEIFDYVHNVMNIPHHIIVKFPQLFNTRVF-KIKERHLFLAYLGRAQY 372
Query: 456 -PKGPFPLSL--FIP-TDECFCQKWAGTTVDKYLAFRQKL 491
P P +SL F+ D+ FC++ A +++ + F + L
Sbjct: 373 DPAKPNYVSLDKFVSFPDKIFCKEIAKASLNDFEKFLKTL 412
>sp|Q8CHZ9|MTERF_MOUSE Transcription termination factor, mitochondrial OS=Mus musculus
GN=Mterf PE=2 SV=1
Length = 379
Score = 38.5 bits (88), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 87/186 (46%), Gaps = 16/186 (8%)
Query: 188 LDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLE-YLLSVGVKQRDVRR 246
L+E+ LL L T G+ I M R P + + + L+ +LLS G + +
Sbjct: 50 LEEEREDLLSNLVTMGVD----IDMARRRQPGVFNKAVTNEQELKLFLLSKGASDKVIGS 105
Query: 247 ILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATP-SLFSYSVENSLKPTVRY 305
I+ R P+ + T E +L + + +I I+ +P S F + +L+ +++
Sbjct: 106 IISRYPRAITRTPE-SLSKRWDLWRKIMASDLEIVNILERSPESFFRSNNNLNLENNIKF 164
Query: 306 LVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGA------PRDDVVKMVT 359
L VG+ K L +++ +P+ +++ N + + +E G PRD V K+++
Sbjct: 165 LC-SVGLTHKCLCRLLTNAPRTFSNSLNL--NKQMVEFLQETGMSLGHNDPRDFVRKIIS 221
Query: 360 KHPQLL 365
K+P +L
Sbjct: 222 KNPSIL 227
>sp|Q99551|MTERF_HUMAN Transcription termination factor, mitochondrial OS=Homo sapiens
GN=MTERF PE=1 SV=1
Length = 399
Score = 35.4 bits (80), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 102/241 (42%), Gaps = 24/241 (9%)
Query: 170 MTRNATENRYQRLSEEI------ELDEKWLP---LLDYLSTFGLKESHFIQMYERHMPSL 220
MTR + EN ++ +S + D + L LL L T G+ I M + P +
Sbjct: 41 MTRFSAENIFKSVSFRLFGVKCHNTDSEPLKNEDLLKNLLTMGVD----IDMARKRQPGV 96
Query: 221 QINVCSARERLE-YLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSK 279
+ + + L+ +LLS G + + I+ R P+ + T E NL + + +
Sbjct: 97 FHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE-NLSKRWDLWRKIVTSDLE 155
Query: 280 IGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTR 339
I I+ +P F S N + VG+ K L +++ +P+ +D+ N +
Sbjct: 156 IVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDL--NKQ 213
Query: 340 CIFLSKELGA------PRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKV 393
+ + G P D V K++ K+P +L S + I FLRS NS+ L V
Sbjct: 214 MVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQSTKR-VKANIEFLRSTFNLNSEELLV 272
Query: 394 L 394
L
Sbjct: 273 L 273
>sp|Q9EPI8|MTERF_RAT Transcription termination factor, mitochondrial OS=Rattus
norvegicus GN=Mterf PE=1 SV=1
Length = 374
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 83/179 (46%), Gaps = 16/179 (8%)
Query: 195 LLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLE-YLLSVGVKQRDVRRILLRQPQ 253
LL+ L T G+ + M R P + + + L+ +LLS G + + I+ R P+
Sbjct: 52 LLNNLLTMGVD----VDMARRRQPGVFNKAVTNEQELKMFLLSKGASDKVIGSIISRYPR 107
Query: 254 ILEYTVENNLESHVAFLISLGIPNSKIGQIIAATP-SLFSYSVENSLKPTVRYLVEEVGI 312
+ T E +L + + +I I+ +P S F + +L+ +++L VG+
Sbjct: 108 AITRTPE-SLSKRWDLWREIMASDLEIVNILERSPESFFRSNNNLNLENNIKFLC-SVGL 165
Query: 313 NEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGA------PRDDVVKMVTKHPQLL 365
K L +++ +P+ +++ N + + +E G P D V K+++K+P +L
Sbjct: 166 THKCLCRLLTSAPRTFSNSLNL--NKQMVEFLQETGISLGHNNPTDFVRKIISKNPSIL 222
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 187,517,798
Number of Sequences: 539616
Number of extensions: 8255668
Number of successful extensions: 83313
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 432
Number of HSP's that attempted gapping in prelim test: 63654
Number of HSP's gapped (non-prelim): 9712
length of query: 504
length of database: 191,569,459
effective HSP length: 122
effective length of query: 382
effective length of database: 125,736,307
effective search space: 48031269274
effective search space used: 48031269274
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)