Query 010686
Match_columns 504
No_of_seqs 264 out of 1309
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 12:07:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010686.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010686hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mva_O Transcription terminati 100.0 3.8E-46 1.3E-50 384.7 21.4 311 147-479 20-342 (343)
2 3m66_A Mterf3, mterf domain-co 100.0 7.5E-46 2.6E-50 370.0 16.9 258 228-491 6-270 (270)
3 4fp9_B Mterf domain-containing 100.0 5.4E-37 1.9E-41 314.1 17.8 226 262-499 45-281 (335)
4 3mva_O Transcription terminati 100.0 3E-35 1E-39 303.2 13.8 279 145-447 50-340 (343)
5 3m66_A Mterf3, mterf domain-co 100.0 2.5E-34 8.4E-39 286.7 15.2 217 194-419 7-225 (270)
6 4fp9_B Mterf domain-containing 99.9 1.2E-25 4E-30 230.2 15.8 182 226-422 45-227 (335)
7 4fzv_B Mterf domain-containing 99.5 3.4E-13 1.2E-17 120.0 17.2 184 309-499 42-236 (239)
8 4fzv_B Mterf domain-containing 99.0 4.9E-10 1.7E-14 99.7 8.3 151 189-348 30-181 (239)
9 2ca6_A RAN GTPase-activating p 86.6 0.17 5.6E-06 51.2 0.8 10 31-40 304-313 (386)
10 4ae4_A Ubiquitin-associated pr 82.0 8.8 0.0003 32.7 9.5 101 301-420 10-115 (118)
11 4ae4_A Ubiquitin-associated pr 81.1 18 0.00062 30.8 11.2 97 194-309 10-114 (118)
12 1oqy_A HHR23A, UV excision rep 78.6 3 0.0001 42.6 6.5 46 223-277 164-209 (368)
13 3ff5_A PEX14P, peroxisomal bio 72.3 4.4 0.00015 29.8 4.1 33 360-396 21-53 (54)
14 3ugm_A TAL effector avrbs3/PTH 66.4 9.5 0.00032 42.0 6.8 22 156-177 287-308 (1047)
15 3ugm_A TAL effector avrbs3/PTH 64.4 16 0.00055 40.3 8.1 22 155-176 252-273 (1047)
16 3ff5_A PEX14P, peroxisomal bio 64.1 7 0.00024 28.7 3.7 24 192-215 30-53 (54)
17 2w84_A Peroxisomal membrane pr 61.5 9.3 0.00032 29.6 4.1 34 360-397 26-59 (70)
18 1oqy_A HHR23A, UV excision rep 55.4 7.4 0.00025 39.7 3.6 42 191-240 167-208 (368)
19 1ify_A HHR23A, UV excision rep 53.4 21 0.00073 25.3 4.7 39 372-418 7-45 (49)
20 2kmw_A Uncharacterized protein 51.3 11 0.00038 33.4 3.6 7 41-47 86-92 (150)
21 4aco_A Centromere DNA-binding 50.9 3.2 0.00011 46.2 0.0 14 47-60 665-678 (956)
22 3hou_D DNA-directed RNA polyme 50.7 16 0.00053 34.4 4.6 50 192-248 160-211 (221)
23 2w84_A Peroxisomal membrane pr 49.7 16 0.00053 28.3 3.7 25 192-216 35-59 (70)
24 2knz_A Ubiquilin-4; cytoplasm, 48.1 23 0.00078 25.6 4.2 41 370-418 8-49 (53)
25 1veg_A NEDD8 ultimate buster-1 47.8 32 0.0011 27.4 5.4 41 373-421 29-69 (83)
26 2knz_A Ubiquilin-4; cytoplasm, 47.1 31 0.001 24.8 4.8 43 190-239 9-52 (53)
27 4hpz_A Dtale2; DNA binding pro 46.4 43 0.0015 34.2 7.2 180 197-394 34-219 (463)
28 2g3q_A Protein YBL047C; endocy 46.1 25 0.00085 23.9 4.0 23 375-397 6-28 (43)
29 4aco_A Centromere DNA-binding 45.1 4.5 0.00015 45.1 0.0 23 45-68 667-689 (956)
30 1vg5_A RSGI RUH-014, rhomboid 44.5 23 0.00079 27.5 4.0 40 371-418 27-66 (73)
31 2dak_A Ubiquitin carboxyl-term 43.9 37 0.0013 25.3 5.0 39 374-420 10-48 (63)
32 1wji_A Tudor domain containing 43.6 36 0.0012 25.5 4.9 38 374-419 10-47 (63)
33 4hpz_A Dtale2; DNA binding pro 42.9 57 0.0019 33.3 7.5 144 202-358 174-321 (463)
34 3v6t_A DHAX3; tandem repeats, 42.2 2E+02 0.0068 29.6 11.4 119 197-323 93-214 (499)
35 2jy5_A Ubiquilin-1; UBA, alter 41.8 38 0.0013 24.2 4.6 27 370-396 9-36 (52)
36 1wiv_A UBP14, ubiquitin-specif 39.4 47 0.0016 25.6 5.1 38 374-419 30-67 (73)
37 3idw_A Actin cytoskeleton-regu 38.0 28 0.00094 27.0 3.4 52 195-250 5-60 (72)
38 1z96_A DNA-damage, UBA-domain 36.0 62 0.0021 21.2 4.7 24 374-397 5-28 (40)
39 3oq9_A Tumor necrosis factor r 34.9 87 0.003 25.0 6.1 44 192-238 12-56 (86)
40 1wgn_A UBAP1, ubiquitin associ 34.7 66 0.0023 24.2 4.9 39 374-420 20-58 (63)
41 2ooa_A E3 ubiquitin-protein li 33.4 75 0.0026 23.0 4.9 26 372-397 10-35 (52)
42 2dag_A Ubiquitin carboxyl-term 31.9 76 0.0026 24.5 5.2 40 374-421 10-50 (74)
43 2dai_A Ubadc1, ubiquitin assoc 31.7 80 0.0028 25.0 5.4 40 374-421 30-69 (83)
44 2oo9_A E3 ubiquitin-protein li 31.6 45 0.0015 23.5 3.3 26 372-397 3-28 (46)
45 2d9s_A CBL E3 ubiquitin protei 30.9 92 0.0031 22.7 5.0 25 373-397 9-33 (53)
46 2cos_A Serine/threonine protei 30.4 46 0.0016 24.3 3.3 42 194-241 11-52 (54)
47 3e3v_A Regulatory protein RECX 30.4 1.6E+02 0.0054 26.3 8.0 85 194-286 23-109 (177)
48 2jy5_A Ubiquilin-1; UBA, alter 30.1 1.1E+02 0.0038 21.7 5.5 41 188-235 8-49 (52)
49 3tj1_A RNA polymerase I-specif 30.0 11 0.00037 41.3 0.0 9 467-475 622-630 (649)
50 3v6t_A DHAX3; tandem repeats, 29.4 98 0.0033 31.9 6.8 120 196-323 57-180 (499)
51 2xzm_O RPS13E; ribosome, trans 29.1 38 0.0013 30.1 3.3 35 216-250 24-58 (153)
52 2dah_A Ubiquilin-3; UBA domain 28.9 83 0.0028 22.7 4.6 40 371-418 7-47 (54)
53 2ekk_A UBA domain from E3 ubiq 28.8 47 0.0016 23.0 3.2 24 374-397 10-33 (47)
54 1ify_A HHR23A, UV excision rep 28.5 1.4E+02 0.0047 20.9 5.7 22 193-214 9-30 (49)
55 3ezq_A Tumor necrosis factor r 28.3 1.1E+02 0.0037 25.9 5.9 42 192-236 20-61 (115)
56 2cpw_A CBL-interacting protein 27.6 64 0.0022 24.1 3.9 37 375-419 21-58 (64)
57 1oy3_D Transcription factor in 27.3 16 0.00054 33.8 0.6 11 46-56 251-261 (282)
58 1wr1_B Ubiquitin-like protein 26.7 86 0.0029 23.1 4.4 41 370-418 14-55 (58)
59 2ooa_A E3 ubiquitin-protein li 26.0 1.3E+02 0.0045 21.7 5.1 21 229-249 13-33 (52)
60 3u5c_N S27A, YS15, 40S ribosom 25.5 36 0.0012 30.1 2.5 34 217-250 23-56 (151)
61 3j20_Q 30S ribosomal protein S 25.3 90 0.0031 27.8 5.1 36 216-251 22-57 (158)
62 2juj_A E3 ubiquitin-protein li 25.1 58 0.002 23.9 3.1 39 372-418 6-44 (56)
63 2o71_A Death domain-containing 24.8 2.1E+02 0.0071 23.8 7.1 45 169-218 17-61 (115)
64 1uxc_A FRUR (1-57), fructose r 24.8 52 0.0018 24.5 3.0 17 308-324 8-24 (65)
65 2crn_A Ubash3A protein; compac 24.7 1.1E+02 0.0037 22.8 4.8 38 376-421 12-50 (64)
66 1vej_A Riken cDNA 4931431F19; 24.6 1.1E+02 0.0037 23.7 4.8 41 370-418 26-67 (74)
67 2bwb_A Ubiquitin-like protein 24.3 1E+02 0.0035 21.4 4.3 25 371-395 5-30 (46)
68 1vg5_A RSGI RUH-014, rhomboid 24.0 1.3E+02 0.0046 23.1 5.3 40 190-236 27-66 (73)
69 3ukx_C Bimax2 peptide; arm rep 23.4 40 0.0014 20.5 1.6 8 55-62 10-17 (28)
70 2dkl_A Trinucleotide repeat co 22.5 97 0.0033 24.6 4.3 38 374-419 22-59 (85)
71 1uxc_A FRUR (1-57), fructose r 21.7 60 0.002 24.2 2.8 46 201-246 9-54 (65)
72 2dna_A Unnamed protein product 21.6 1.2E+02 0.0039 23.2 4.4 41 370-418 16-57 (67)
73 1wji_A Tudor domain containing 21.2 1.8E+02 0.006 21.6 5.3 36 194-236 11-46 (63)
No 1
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=3.8e-46 Score=384.66 Aligned_cols=311 Identities=16% Similarity=0.230 Sum_probs=271.7
Q ss_pred hhhhhhhhcccCCCCCccccccccccchhhhhhhhhhcccCcCCChHHHHHHHHhCCCCHHHHHHHHHhcCCccccCccC
Q 010686 147 NTIKNSFDDTYYNSKDVDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCS 226 (504)
Q Consensus 147 ~~v~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~p~ll~~~~~e~~~~~vl~fL~slG~s~~~I~~il~r~P~lL~~~~~~ 226 (504)
..|+++|.++|++..+ + ++.+|+++ ..+ .+++.++++||+++|++.++|++++.++|.+|.+++++
T Consensus 20 ~~~v~~L~s~Gl~~~~------~------~~~~p~l~-~~s-~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~~ 85 (343)
T 3mva_O 20 EDLLKNLLTMGVDIDM------A------RKRQPGVF-HRM-ITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPEN 85 (343)
T ss_dssp CCHHHHHHHHTCCHHH------H------HHHCGGGG-GCS-CCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHHH
T ss_pred HHHHHHHHHcCCCHHH------H------HHhCchhh-ccC-cccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHHH
Confidence 5688999999988332 2 45578876 444 46899999999999999999999999999999999889
Q ss_pred HHHHHHHHHHCCCChhhHHHHHhhCCcc-cccCcccchHHHHHHHHHcCCCchhhhhHhhhcCcccccccccchhHHHHH
Q 010686 227 ARERLEYLLSVGVKQRDVRRILLRQPQI-LEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRY 305 (504)
Q Consensus 227 l~~~l~fL~slGls~~~l~kil~~~P~l-L~~s~e~~L~p~v~fL~~lGls~~~I~klL~~~P~lL~~s~e~~l~p~v~f 305 (504)
+.++++||+++|++++++.+++.++|++ ++...++++.|+++||+++|++.++|++++.++|++|++++++ ++++++|
T Consensus 86 l~p~l~fL~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~-~~~~v~~ 164 (343)
T 3mva_O 86 LSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDL-NKQMVEF 164 (343)
T ss_dssp HHHHHHHHTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHH-HHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHH-hhHHHHH
Confidence 9999999999999999999999999995 4444435899999999999999999999999999999999986 5999999
Q ss_pred HHHHhCCC------hhHHHHHHhhCccceeccccccchhhhhhhhhhcCCCchhHHHhhhcc-ccccccccccchHHHHH
Q 010686 306 LVEEVGIN------EKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKH-PQLLHYSIDDGLLPRIN 378 (504)
Q Consensus 306 L~~~lGv~------~~~l~~vI~~~P~lL~~~~e~~l~~kv~fL~~~lG~s~~~v~~ml~~~-P~iL~~s~e~~L~~kv~ 378 (504)
|+ ++|++ ...|.+++.++|.+|+.+ +.+++++++||++++|++++++..++.+. |.++..+ .+.+++++.
T Consensus 165 L~-~lgv~~g~~~p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s-~~~l~~~~~ 241 (343)
T 3mva_O 165 LQ-AAGLSLGHNDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLS-NDYARRSYA 241 (343)
T ss_dssp HH-HHHHHTTCSCHHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCC-TTHHHHHHH
T ss_pred HH-HhCCCcCCCcHHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhcc-HHHHHHHHH
Confidence 97 67764 678999999999999999 56899999999657999999999999885 5788888 578999997
Q ss_pred HHH----HhcCChHHHHHHHHhccchhccCcccchHHHHHHHHHHhCCcHHHHhhcCceeccCcccchHHHHHHHHHhhc
Q 010686 379 FLR----SIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKK 454 (504)
Q Consensus 379 fL~----~lG~s~~ev~~~v~r~P~iL~~SlE~~L~pk~~fL~~~mg~~~~~I~k~P~lL~~SLekrI~PR~~fL~~L~~ 454 (504)
|+. ++||+.+++..||.++|+||++|. ++|++|++||++ ||+++++|+++|++|+||+| ||+|||++|+..|.
T Consensus 242 ~l~e~~~~lG~s~~ev~~~v~~~P~il~~s~-~~l~~k~~fl~~-mg~~~~~i~~~P~~l~~sle-ri~~R~~~L~~~g~ 318 (343)
T 3mva_O 242 NIKEKLFSLGCTEEEVQKFVLSYPDVIFLAE-KKFNDKIDCLME-ENISISQIIENPRVLDSSIS-TLKSRIKELVNAGC 318 (343)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHTCGGGGGSCH-HHHHHHHHHHHT-TTCCHHHHHHSGGGGGSCHH-HHHHHHHHHHTTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHhCCchhcccH-HHHHHHHHHHHH-cCCCHHHHHhCCHHHhcCHH-HHHHHHHHHHHCCC
Confidence 776 699999999999999999999995 679999999999 99999999999999999999 99999998887663
Q ss_pred CCCCCCCcccccCCHHHHHHHhcCC
Q 010686 455 APKGPFPLSLFIPTDECFCQKWAGT 479 (504)
Q Consensus 455 ~~k~~~~Ls~L~~sd~~F~~~~~~~ 479 (504)
-.. .-.+..|.+||++|+++|.+.
T Consensus 319 ~~~-~~~~~~l~~s~~~F~~~~~~~ 342 (343)
T 3mva_O 319 NLS-TLNITLLSWSKKRYEAKLKKL 342 (343)
T ss_dssp CSS-SSCGGGGGSCHHHHHHHHHHT
T ss_pred CCC-CCcchhhcCCHHHHHHHHhcc
Confidence 111 112344679999999999754
No 2
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=100.00 E-value=7.5e-46 Score=369.99 Aligned_cols=258 Identities=22% Similarity=0.422 Sum_probs=223.4
Q ss_pred HHHHHHHHHCCCChhhHHHHHhhCCcccccCcccchHHHHHHHHHcCCCchhhhhHhhhcCcccccccccchhHHHHHHH
Q 010686 228 RERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLV 307 (504)
Q Consensus 228 ~~~l~fL~slGls~~~l~kil~~~P~lL~~s~e~~L~p~v~fL~~lGls~~~I~klL~~~P~lL~~s~e~~l~p~v~fL~ 307 (504)
.++++||.++|++..++.+....+|.+|++++++++.|+++||.++|++.++|+++|.++|.+|++++++ ++|+++||+
T Consensus 6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~ 84 (270)
T 3m66_A 6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLH 84 (270)
T ss_dssp HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHH
Confidence 4678888888888888877666667778888878888888888888888888888888888888888886 888888886
Q ss_pred HHhCCChhHHHHHHhhCccceeccccccchhhhhhhhhhcCCCchhHHHhhhccccccccccccchHHHHHHH-HHhcCC
Q 010686 308 EEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFL-RSIGMR 386 (504)
Q Consensus 308 ~~lGv~~~~l~~vI~~~P~lL~~~~e~~l~~kv~fL~~~lG~s~~~v~~ml~~~P~iL~~s~e~~L~~kv~fL-~~lG~s 386 (504)
++|+++.++.+++.++|++|+.+++ +++++++||++++|++.+++.+++.++|.+++.+. +.++++++++ .++||+
T Consensus 85 -~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~-e~~~~~v~~l~~~~G~s 161 (270)
T 3m66_A 85 -SKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSL-EPVKENMKVYRLELGFK 161 (270)
T ss_dssp -HTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCS-HHHHHHHHHHHHTSCCC
T ss_pred -HcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeech-HHHHHHHHHHHHHcCCC
Confidence 7888888888888888888888887 48888888855789999999999999999999884 6799999986 699999
Q ss_pred hHHHHHHHHhccchhccCcccchHHHHHHHHHHhCCcHHHHhhcCceeccCcccchHHHHHHHHHhhcCC--CCC---CC
Q 010686 387 NSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAP--KGP---FP 461 (504)
Q Consensus 387 ~~ev~~~v~r~P~iL~~SlE~~L~pk~~fL~~~mg~~~~~I~k~P~lL~~SLekrI~PR~~fL~~L~~~~--k~~---~~ 461 (504)
.++|..||.++|++|++| +++|++|++||+++||+++++|+++|++|+||+| ||+|||.|+++|+..+ +.. ++
T Consensus 162 ~~ei~~~v~~~P~il~~s-~~~l~~k~~fL~~~mg~~~~~i~~~P~~l~~Sle-ri~pR~~~l~~L~~~g~~~~~~~~~~ 239 (270)
T 3m66_A 162 HNEIQHMITRIPKMLTAN-KMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAKPNYIS 239 (270)
T ss_dssp HHHHHHHHHHCGGGGTSC-HHHHHHHHHHHHTTSCCCHHHHHHCGGGGGSCHH-HHHHHHHHHHHHTCCCCCTTSSSCCC
T ss_pred HHHHHHHHHhCChhheec-HHHHHHHHHHHHHHhCCCHHHHHhCchHhhCCHH-HHHHHHHHHHHhhccCCCCCCCCCCC
Confidence 999999999999999999 4899999999999999999999999999999999 9999999999998532 211 45
Q ss_pred cccc-cCCHHHHHHHhcCCChHHHHHHHHHH
Q 010686 462 LSLF-IPTDECFCQKWAGTTVDKYLAFRQKL 491 (504)
Q Consensus 462 Ls~L-~~sd~~F~~~~~~~s~e~y~~f~~~l 491 (504)
|+++ .+||++|+++|+++++|+|+.|++.|
T Consensus 240 L~~~l~~sd~~F~~~~~~~~~eey~~f~k~~ 270 (270)
T 3m66_A 240 LDKLVSIPDEIFCEEIAKASVQDFEKFLKTL 270 (270)
T ss_dssp HHHHHHSCHHHHHHHTTCSCHHHHHHHHTTC
T ss_pred HHHHhcCCHHHHHHHHhcCCHHHHHHHHhcC
Confidence 6554 69999999999999999999999753
No 3
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=100.00 E-value=5.4e-37 Score=314.08 Aligned_cols=226 Identities=21% Similarity=0.330 Sum_probs=192.6
Q ss_pred chHHHHHHHHHcCCCchhhhhHhhhcCcccccccccchhHHHHHHHHHhCCChhHHHHHHhhCccceeccccccchhhhh
Q 010686 262 NLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCI 341 (504)
Q Consensus 262 ~L~p~v~fL~~lGls~~~I~klL~~~P~lL~~s~e~~l~p~v~fL~~~lGv~~~~l~~vI~~~P~lL~~~~e~~l~~kv~ 341 (504)
.+...+.+|.++|+++.+|+++|+.+|.++..+ +.+++.||. .+|+++++|.++|.++|++|..+++ ++++++.
T Consensus 45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~~----l~~~i~~L~-~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~ 118 (335)
T 4fp9_B 45 ELERVMSSLLDMGFSNAHINELLSVRRGASLQQ----LLDIISEFI-LLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSS 118 (335)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHHH----HHHHHHHHH-HTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHH
T ss_pred cHHHHHHHHHHCCCCHHHHHHHHHhCcccchhH----HHHHHHHHH-HcCCCHHHHHHHHHhChhhccCCHH-HHHHHHH
Confidence 466677778888888888888888888887543 567788886 7888888888888888888888876 5888888
Q ss_pred hhhhhcCCCchhHHHhhhccccccccccccchHHHHHHHH-HhcCChHHHHHHHHhccchhccCcccchHHHHHHHHHHh
Q 010686 342 FLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLR-SIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINEL 420 (504)
Q Consensus 342 fL~~~lG~s~~~v~~ml~~~P~iL~~s~e~~L~~kv~fL~-~lG~s~~ev~~~v~r~P~iL~~SlE~~L~pk~~fL~~~m 420 (504)
|| +++|++.+++.+++.++|++|+++. +.+..++.+|. ++||+.++|..||.++|+||++| +++|++|++||+++|
T Consensus 119 fL-~~lGl~~~~i~~ll~~~P~lL~~s~-e~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S-~e~L~~K~efLv~~M 195 (335)
T 4fp9_B 119 YL-QKLGLGEGKLKRVLYCCPEIFTMRQ-QDINDTVRLLKEKCLFTVQQVTKILHSCPSVLRED-LGQLEYKFQYAYFRM 195 (335)
T ss_dssp HH-HHTTCTTTTHHHHHHHCGGGGTSCH-HHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSC-HHHHHHHHHHHHTTT
T ss_pred HH-HHcCCCHHHHHHHHHhCchhhccCh-HHHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCC-HHHHHHHHHHHHHHh
Confidence 88 5799999999999999999999995 57888999985 89999999999999999999999 689999999999999
Q ss_pred CCcHHHHhhcCceeccCcccchHHHHHHHHHhhcCCCC----C-----CCcccc-cCCHHHHHHHhcCCChHHHHHHHHH
Q 010686 421 HNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKG----P-----FPLSLF-IPTDECFCQKWAGTTVDKYLAFRQK 490 (504)
Q Consensus 421 g~~~~~I~k~P~lL~~SLekrI~PR~~fL~~L~~~~k~----~-----~~Ls~L-~~sd~~F~~~~~~~s~e~y~~f~~~ 490 (504)
|+++.+|++ |.+|+||++ ||+|||.||+.+|.+++. . .+|..| ..||++||+++|++|+|+|+.|++
T Consensus 196 gl~~~eIvk-P~~l~ySLe-RIkpRH~fL~~lG~~q~~~~k~~~~~~npsL~~il~~sd~~F~~~vA~~s~eey~~F~k- 272 (335)
T 4fp9_B 196 GIKHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTSVEEFQVFKK- 272 (335)
T ss_dssp CCCHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTSCCCCCSSSCCSSCCCCHHHHTTSCHHHHHHHTSCCCHHHHHHHHH-
T ss_pred CCCHHHccc-cchhhccHH-HHHHHHHHHHHcCCccCCCcccccCCCCccHHHHHcCCHHHHHHHHHhcCHHHHHHHHH-
Confidence 999999998 999999998 999999999999986432 1 135555 589999999999999999999986
Q ss_pred HhhHHHHHH
Q 010686 491 LLLKDFAKK 499 (504)
Q Consensus 491 l~~~~~~~~ 499 (504)
+++++..++
T Consensus 273 ~~~~e~~~~ 281 (335)
T 4fp9_B 273 LLAREEEES 281 (335)
T ss_dssp HHHHHHHCC
T ss_pred HHHhhhhcc
Confidence 666666543
No 4
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=3e-35 Score=303.24 Aligned_cols=279 Identities=19% Similarity=0.260 Sum_probs=240.3
Q ss_pred hhhhhhhhhhcccCCCCCccccccccccchhhhhhhhhhcccCcCCChHHHHHHHHhCCCCHHHHHHHHHhcCCccc-cC
Q 010686 145 RRNTIKNSFDDTYYNSKDVDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQ-IN 223 (504)
Q Consensus 145 ~~~~v~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~p~ll~~~~~e~~~~~vl~fL~slG~s~~~I~~il~r~P~lL~-~~ 223 (504)
...+|+.+|+++|++..++..+ +.+||+++ .++ .+++.|+++||+++|+++++|++++.++|.++. ..
T Consensus 50 ~~~~vl~fL~~~G~s~~~i~~i---------v~~~P~lL-~~~-~~~l~p~l~fL~~lG~s~~~i~~il~~~P~iLl~s~ 118 (343)
T 3mva_O 50 NEQDLKMFLLSKGASKEVIASI---------ISRYPRAI-TRT-PENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSN 118 (343)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHH---------HHHCGGGG-GCC-HHHHHHHHHHHTTTSSCHHHHHHHHHHCSHHHHSCC
T ss_pred cHHHHHHHHHHcCCCHHHHHHH---------HHhCcHHH-hCC-HHHHHHHHHHHHHcCCCHHHHHHHHHHCCHHHhCCC
Confidence 3468999999999999999984 78899999 777 467999999999999999999999999999544 44
Q ss_pred cc-CHHHHHHHHHHCCCChhhHHHHHhhCCcccccCcccchHHHHHHHHHcCCC------chhhhhHhhhcCcccccccc
Q 010686 224 VC-SARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIP------NSKIGQIIAATPSLFSYSVE 296 (504)
Q Consensus 224 ~~-~l~~~l~fL~slGls~~~l~kil~~~P~lL~~s~e~~L~p~v~fL~~lGls------~~~I~klL~~~P~lL~~s~e 296 (504)
.+ ++.++++||+++|++.+++.+++.++|++|+++++.+ ++++++|+++|++ .+.|.+++.++|.+|+++ +
T Consensus 119 ~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~~-~~~v~~L~~lgv~~g~~~p~~~I~~il~~~P~iL~~s-~ 196 (343)
T 3mva_O 119 NNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLN-KQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQS-T 196 (343)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHHH-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHCGGGGGSC-H
T ss_pred hHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHHh-hHHHHHHHHhCCCcCCCcHHHHHHHHHHhCChHhcCC-H
Confidence 43 8999999999999999999999999999999999655 9999999987764 678999999999999999 5
Q ss_pred cchhHHHHHHHHHhCCChhHHHHHHhhC-ccceeccccccchhhhhhhhh---hcCCCchhHHHhhhccccccccccccc
Q 010686 297 NSLKPTVRYLVEEVGINEKSLGKVVQLS-PQVLVQRIDISWNTRCIFLSK---ELGAPRDDVVKMVTKHPQLLHYSIDDG 372 (504)
Q Consensus 297 ~~l~p~v~fL~~~lGv~~~~l~~vI~~~-P~lL~~~~e~~l~~kv~fL~~---~lG~s~~~v~~ml~~~P~iL~~s~e~~ 372 (504)
++++++++||++++|++++++..++... |.++..+.+ .|++++.++.+ ++||+++++..|+.++|++|.+|. ++
T Consensus 197 ~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~-~l~~~~~~l~e~~~~lG~s~~ev~~~v~~~P~il~~s~-~~ 274 (343)
T 3mva_O 197 KRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSND-YARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAE-KK 274 (343)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTT-HHHHHHHHHHHHHHTTTCCHHHHHHHHHTCGGGGGSCH-HH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCchhcccH-HH
Confidence 6799999999867999999999998885 588888765 68888877743 799999999999999999999995 56
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhccchhccCcccchHHHHHHHHHHhCCcHHHHhhcCceeccCcccchHHHHH
Q 010686 373 LLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHR 447 (504)
Q Consensus 373 L~~kv~fL~~lG~s~~ev~~~v~r~P~iL~~SlE~~L~pk~~fL~~~mg~~~~~I~k~P~lL~~SLekrI~PR~~ 447 (504)
+++|++||..||++.++| .++|++|++|+| +|+||+.||.. .|+.+. ..+-.+|+.| +++..-|+.
T Consensus 275 l~~k~~fl~~mg~~~~~i----~~~P~~l~~sle-ri~~R~~~L~~-~g~~~~--~~~~~~l~~s-~~~F~~~~~ 340 (343)
T 3mva_O 275 FNDKIDCLMEENISISQI----IENPRVLDSSIS-TLKSRIKELVN-AGCNLS--TLNITLLSWS-KKRYEAKLK 340 (343)
T ss_dssp HHHHHHHHHTTTCCHHHH----HHSGGGGGSCHH-HHHHHHHHHHT-TTCCSS--SSCGGGGGSC-HHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHH----HhCCHHHhcCHH-HHHHHHHHHHH-CCCCCC--CCcchhhcCC-HHHHHHHHh
Confidence 999999998899999985 799999999997 99999999986 476533 1222777777 445554443
No 5
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=100.00 E-value=2.5e-34 Score=286.73 Aligned_cols=217 Identities=21% Similarity=0.347 Sum_probs=203.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhcCCccccCcc-CHHHHHHHHHHCCCChhhHHHHHhhCCcccccCcccchHHHHHHHHH
Q 010686 194 PLLDYLSTFGLKESHFIQMYERHMPSLQINVC-SARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLIS 272 (504)
Q Consensus 194 ~vl~fL~slG~s~~~I~~il~r~P~lL~~~~~-~l~~~l~fL~slGls~~~l~kil~~~P~lL~~s~e~~L~p~v~fL~~ 272 (504)
++++||.++|++.++|.+....+|.+|.++++ ++.++++||.++|++.+++++++.++|.+|++++++ ++|+++||++
T Consensus 7 ~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~~ 85 (270)
T 3m66_A 7 ETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLHS 85 (270)
T ss_dssp HHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHHH
Confidence 67999999999999998877777777999986 899999999999999999999999999999999976 9999999999
Q ss_pred cCCCchhhhhHhhhcCcccccccccchhHHHHHHHHHhCCChhHHHHHHhhCccceeccccccchhhhhhhhhhcCCCch
Q 010686 273 LGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRD 352 (504)
Q Consensus 273 lGls~~~I~klL~~~P~lL~~s~e~~l~p~v~fL~~~lGv~~~~l~~vI~~~P~lL~~~~e~~l~~kv~fL~~~lG~s~~ 352 (504)
+|++.++|++++.++|++|++++++ ++++++||++++|++.+++.+++.++|.+++.+.+ .+++++.++.+++|++.+
T Consensus 86 ~Gls~~~i~~~l~~~P~lL~~s~~~-l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e-~~~~~v~~l~~~~G~s~~ 163 (270)
T 3m66_A 86 KNFSKADVAQMVRKAPFLLNFSVER-LDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE-PVKENMKVYRLELGFKHN 163 (270)
T ss_dssp TTCCHHHHHHHHHHSTTGGGSCHHH-HHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSH-HHHHHHHHHHHTSCCCHH
T ss_pred cCCCHHHHHHHHHhCCHHHcCCHHH-HHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechH-HHHHHHHHHHHHcCCCHH
Confidence 9999999999999999999999985 99999999668999999999999999999999987 588999987679999999
Q ss_pred hHHHhhhccccccccccccchHHHHHHHH-HhcCChHHHHHHHHhccchhccCcccchHHHHHHHHHH
Q 010686 353 DVVKMVTKHPQLLHYSIDDGLLPRINFLR-SIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINE 419 (504)
Q Consensus 353 ~v~~ml~~~P~iL~~s~e~~L~~kv~fL~-~lG~s~~ev~~~v~r~P~iL~~SlE~~L~pk~~fL~~~ 419 (504)
++..|+.++|++|++|. +++++|++||. +||++.++| .++|++|++|+| +|+||+.||..-
T Consensus 164 ei~~~v~~~P~il~~s~-~~l~~k~~fL~~~mg~~~~~i----~~~P~~l~~Sle-ri~pR~~~l~~L 225 (270)
T 3m66_A 164 EIQHMITRIPKMLTANK-MKLTETFDFVHNVMSIPHHII----VKFPQVFNTRLF-KVKERHLFLTYL 225 (270)
T ss_dssp HHHHHHHHCGGGGTSCH-HHHHHHHHHHHTTSCCCHHHH----HHCGGGGGSCHH-HHHHHHHHHHHH
T ss_pred HHHHHHHhCChhheecH-HHHHHHHHHHHHHhCCCHHHH----HhCchHhhCCHH-HHHHHHHHHHHh
Confidence 99999999999999995 89999999996 799999875 799999999997 999999999873
No 6
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=99.93 E-value=1.2e-25 Score=230.16 Aligned_cols=182 Identities=19% Similarity=0.345 Sum_probs=146.4
Q ss_pred CHHHHHHHHHHCCCChhhHHHHHhhCCcccccCcccchHHHHHHHHHcCCCchhhhhHhhhcCcccccccccchhHHHHH
Q 010686 226 SARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRY 305 (504)
Q Consensus 226 ~l~~~l~fL~slGls~~~l~kil~~~P~lL~~s~e~~L~p~v~fL~~lGls~~~I~klL~~~P~lL~~s~e~~l~p~v~f 305 (504)
.++..+.+|..+|+++.+|++++.++|.++. .++.+++.||..+|++.++|+++|.++|++|+.+++ +|++++.|
T Consensus 45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~----~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~f 119 (335)
T 4fp9_B 45 ELERVMSSLLDMGFSNAHINELLSVRRGASL----QQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSY 119 (335)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCH----HHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHH
T ss_pred cHHHHHHHHHHCCCCHHHHHHHHHhCcccch----hHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHH
Confidence 4566677777777777777777777777763 345667777777777777777777777777777776 37777777
Q ss_pred HHHHhCCChhHHHHHHhhCccceeccccccchhhhhhhhhhcCCCchhHHHhhhccccccccccccchHHHHHHHH-Hhc
Q 010686 306 LVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLR-SIG 384 (504)
Q Consensus 306 L~~~lGv~~~~l~~vI~~~P~lL~~~~e~~l~~kv~fL~~~lG~s~~~v~~ml~~~P~iL~~s~e~~L~~kv~fL~-~lG 384 (504)
|+ .+|++..++.+++.++|++|+++.+ .+..++.+|..++||+.+++..||.++|+||.++ .++|++|++||. .||
T Consensus 120 L~-~lGl~~~~i~~ll~~~P~lL~~s~e-~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S-~e~L~~K~efLv~~Mg 196 (335)
T 4fp9_B 120 LQ-KLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLLKEKCLFTVQQVTKILHSCPSVLRED-LGQLEYKFQYAYFRMG 196 (335)
T ss_dssp HH-HTTCTTTTHHHHHHHCGGGGTSCHH-HHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSC-HHHHHHHHHHHHTTTC
T ss_pred HH-HcCCCHHHHHHHHHhCchhhccChH-HHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCC-HHHHHHHHHHHHHHhC
Confidence 76 5777777777777777777777766 4667777776789999999999999999999999 578999999997 899
Q ss_pred CChHHHHHHHHhccchhccCcccchHHHHHHHHHHhCC
Q 010686 385 MRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHN 422 (504)
Q Consensus 385 ~s~~ev~~~v~r~P~iL~~SlE~~L~pk~~fL~~~mg~ 422 (504)
++..+|. + |++|+||++ +|+||+.||.. +|.
T Consensus 197 l~~~eIv----k-P~~l~ySLe-RIkpRH~fL~~-lG~ 227 (335)
T 4fp9_B 197 IKHPDIV----K-SEYLQYSLT-KIKQRHIYLER-LGR 227 (335)
T ss_dssp CCHHHHH----H-TTGGGSCHH-HHHHHHHHHHH-HTS
T ss_pred CCHHHcc----c-cchhhccHH-HHHHHHHHHHH-cCC
Confidence 9999973 3 999999996 99999999987 454
No 7
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=99.53 E-value=3.4e-13 Score=119.96 Aligned_cols=184 Identities=24% Similarity=0.405 Sum_probs=140.2
Q ss_pred HhCCChhHHHHHHhhCccceeccccccchhhhhhhhhhcCCCchhHHHhhhccccccccccccchHHHHHHHH-HhcCCh
Q 010686 309 EVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLR-SIGMRN 387 (504)
Q Consensus 309 ~lGv~~~~l~~vI~~~P~lL~~~~e~~l~~kv~fL~~~lG~s~~~v~~ml~~~P~iL~~s~e~~L~~kv~fL~-~lG~s~ 387 (504)
-+|++++-+.-++.+.|++|...+- .++.+-.+| ..+|+.+..+.+++--+|.|+++. ...+...+..|+ .+-|+.
T Consensus 42 llglnpepvcvvlkkspqllklpim-qmrkrssyl-qklglgegklkrvlyccpeiftmr-qqdindtvrllkekclftv 118 (239)
T 4fzv_B 42 LLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYL-QKLGLGEGKLKRVLYCCPEIFTMR-QQDINDTVRLLKEKCLFTV 118 (239)
T ss_dssp HHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHH-HHHTTCSSCCHHHHHHCGGGGTSC-HHHHHHHHHHHHHHSCCCH
T ss_pred hhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHH-HHhCCCccchhhheecCcHHHHHH-HhhHhHHHHHHHHhHHhhH
Confidence 4677776666666677776665543 344555566 366777776666666677777665 456677777775 577888
Q ss_pred HHHHHHHHhccchhccCcccchHHHHHHHHHHhCCcHHHHhhcCceeccCcccchHHHHHHHHHhhcCC----CC----C
Q 010686 388 SDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAP----KG----P 459 (504)
Q Consensus 388 ~ev~~~v~r~P~iL~~SlE~~L~pk~~fL~~~mg~~~~~I~k~P~lL~~SLekrI~PR~~fL~~L~~~~----k~----~ 459 (504)
.++.+++..||.+|.-++ ..+.-|+.|-.-.||+..-+|++ ..+|.||+. +|+.||-+|..|++.+ +| |
T Consensus 119 qqvtkilhscpsvlredl-gqleykfqyayfrmgikhpdivk-seylqyslt-kikqrhiylerlgryqtpdkkgqtqip 195 (239)
T 4fzv_B 119 QQVTKILHSCPSVLREDL-GQLEYKFQYAYFRMGIKHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIP 195 (239)
T ss_dssp HHHHHHHHHCGGGGTSCT-THHHHHHHHHHHTSCCCHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTCCCCCCSSSCCSSC
T ss_pred HHHHHHHHhCcHHHHHHH-hhhhhhHhHHHHHccCCCcchhH-HHHHHHHHH-HHHHHHhHHHHhcccCCCCccCCccCC
Confidence 888888888999888886 68999999998899999888888 678999997 7999999999998743 22 1
Q ss_pred CCc-cc-ccCCHHHHHHHhcCCChHHHHHHHHHHhhHHHHHH
Q 010686 460 FPL-SL-FIPTDECFCQKWAGTTVDKYLAFRQKLLLKDFAKK 499 (504)
Q Consensus 460 ~~L-s~-L~~sd~~F~~~~~~~s~e~y~~f~~~l~~~~~~~~ 499 (504)
.|+ .. +..|+.+|.++-+.+++|+|+.|++ +++++..|.
T Consensus 196 npllkdilrvseaeflartactsveefqvfkk-llareeees 236 (239)
T 4fzv_B 196 NPLLKDILRVSEAEFLARTACTSVEEFQVFKK-LLAREEEES 236 (239)
T ss_dssp CCCHHHHHTSCHHHHHHHTSCSCHHHHHHHHH-HHHHHHHHH
T ss_pred ChHHHHHHHHhHHHHHHHHhcccHHHHHHHHH-HHhhhhhhh
Confidence 244 44 4689999999999999999999996 777776653
No 8
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=99.03 E-value=4.9e-10 Score=99.73 Aligned_cols=151 Identities=19% Similarity=0.367 Sum_probs=128.7
Q ss_pred CCChHHHHHHHHhCCCCHHHHHHHHHhcCCccccCccCHHHHHHHHHHCCCChhhHHHHHhhCCcccccCcccchHHHHH
Q 010686 189 DEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVA 268 (504)
Q Consensus 189 e~~~~~vl~fL~slG~s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~slGls~~~l~kil~~~P~lL~~s~e~~L~p~v~ 268 (504)
.++++.++..|.-+|++++.+..++.+.|+++.....++..+-.||+.+|+....+.+++-++|.|+++.. .++...+.
T Consensus 30 ~qqlldiisefillglnpepvcvvlkkspqllklpimqmrkrssylqklglgegklkrvlyccpeiftmrq-qdindtvr 108 (239)
T 4fzv_B 30 XQQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQ-QDINDTVR 108 (239)
T ss_dssp CCTTTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHHHHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCH-HHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCceEEEecCCHHHhcChHHHHHHHHHHHHHhCCCccchhhheecCcHHHHHHH-hhHhHHHH
Confidence 35566889999999999999999999999999999889999999999999999999999999999999998 68999999
Q ss_pred HHH-HcCCCchhhhhHhhhcCcccccccccchhHHHHHHHHHhCCChhHHHHHHhhCccceeccccccchhhhhhhhhhc
Q 010686 269 FLI-SLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKEL 347 (504)
Q Consensus 269 fL~-~lGls~~~I~klL~~~P~lL~~s~e~~l~p~v~fL~~~lGv~~~~l~~vI~~~P~lL~~~~e~~l~~kv~fL~~~l 347 (504)
.|+ .+-++..++.+++.+||++|..++. .+.-++.|..-.+|+...++.+- ..|.++.. .++.+--+| +.+
T Consensus 109 llkekclftvqqvtkilhscpsvlredlg-qleykfqyayfrmgikhpdivks-----eylqyslt-kikqrhiyl-erl 180 (239)
T 4fzv_B 109 LLKEKCLFTVQQVTKILHSCPSVLREDLG-QLEYKFQYAYFRMGIKHPDIVKS-----EYLQYSLT-KIKQRHIYL-ERL 180 (239)
T ss_dssp HHHHHSCCCHHHHHHHHHHCGGGGTSCTT-HHHHHHHHHHHTSCCCHHHHHHT-----TGGGSCHH-HHHHHHHHH-HHH
T ss_pred HHHHhHHhhHHHHHHHHHhCcHHHHHHHh-hhhhhHhHHHHHccCCCcchhHH-----HHHHHHHH-HHHHHHhHH-HHh
Confidence 998 5889999999999999999999987 48888888776899998887652 33334443 355555566 466
Q ss_pred C
Q 010686 348 G 348 (504)
Q Consensus 348 G 348 (504)
|
T Consensus 181 g 181 (239)
T 4fzv_B 181 G 181 (239)
T ss_dssp T
T ss_pred c
Confidence 6
No 9
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=86.60 E-value=0.17 Score=51.19 Aligned_cols=10 Identities=20% Similarity=0.398 Sum_probs=4.7
Q ss_pred ceEEEeeccc
Q 010686 31 RFVVLSTHSN 40 (504)
Q Consensus 31 ~~~~~~~~~~ 40 (504)
....+.+..|
T Consensus 304 ~L~~L~l~~N 313 (386)
T 2ca6_A 304 DLLFLELNGN 313 (386)
T ss_dssp TCCEEECTTS
T ss_pred CceEEEccCC
Confidence 3444555444
No 10
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=82.00 E-value=8.8 Score=32.74 Aligned_cols=101 Identities=15% Similarity=0.105 Sum_probs=57.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHhhCccceeccccccchhhhhhhh-----hhcCCCchhHHHhhhccccccccccccchHH
Q 010686 301 PTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLS-----KELGAPRDDVVKMVTKHPQLLHYSIDDGLLP 375 (504)
Q Consensus 301 p~v~fL~~~lGv~~~~l~~vI~~~P~lL~~~~e~~l~~kv~fL~-----~~lG~s~~~v~~ml~~~P~iL~~s~e~~L~~ 375 (504)
..|..|. ++||+...+.+.+..+-. ..+.-++||. .+.|++...+...+..+..--.. .....+
T Consensus 10 ~~v~~l~-~MGFp~~~~~kAl~~~g~--------~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~--~~~~~~ 78 (118)
T 4ae4_A 10 QCVETVV-NMGYSYECVLRAMKAAGA--------NIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEK--MMEFLQ 78 (118)
T ss_dssp HHHHHHH-HTTCCHHHHHHHHHHHCS--------CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHH--HHHHHH
T ss_pred HHHHHHH-HcCCCHHHHHHHHHHHCc--------CHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCccc--cccCHH
Confidence 3555564 677777777766654311 2333344443 24566665554444322110000 011235
Q ss_pred HHHHHHHhcCChHHHHHHHHhccchhccCcccchHHHHHHHHHHh
Q 010686 376 RINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINEL 420 (504)
Q Consensus 376 kv~fL~~lG~s~~ev~~~v~r~P~iL~~SlE~~L~pk~~fL~~~m 420 (504)
.+.-|.+|||+.+.+...++.+ .+.+..-+++|....
T Consensus 79 ~v~~L~eMGF~~~~a~~AL~~~--------~nd~erAlewL~~~~ 115 (118)
T 4ae4_A 79 LMSKFKEMGFELKDIKEVLLLH--------NNDQDNALEDLMARA 115 (118)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHT--------TTCHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHHhc
Confidence 6777888999999998888776 566777777776643
No 11
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=81.06 E-value=18 Score=30.76 Aligned_cols=97 Identities=12% Similarity=0.180 Sum_probs=63.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhcCCccccCccCHHHHHHHHH------HCCCChhhHHHHHhhCCcccccCcc--cchHH
Q 010686 194 PLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLL------SVGVKQRDVRRILLRQPQILEYTVE--NNLES 265 (504)
Q Consensus 194 ~vl~fL~slG~s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~------slGls~~~l~kil~~~P~lL~~s~e--~~L~p 265 (504)
..++-|.++||+...+.+.+... ..++...++||. ..|++...+...+..+. .+.. ..-..
T Consensus 10 ~~v~~l~~MGFp~~~~~kAl~~~-------g~~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~----~~~~~~~~~~~ 78 (118)
T 4ae4_A 10 QCVETVVNMGYSYECVLRAMKAA-------GANIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQ----CSEEKMMEFLQ 78 (118)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHH-------CSCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCS----SCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHH-------CcCHHHHHHHHHHhchhcccCCChhhhHHHHHhcc----CCccccccCHH
Confidence 45888999999999999988763 125666677764 34677777776665432 1111 11123
Q ss_pred HHHHHHHcCCCchhhhhHhhhcCcccccccccchhHHHHHHHHH
Q 010686 266 HVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEE 309 (504)
Q Consensus 266 ~v~fL~~lGls~~~I~klL~~~P~lL~~s~e~~l~p~v~fL~~~ 309 (504)
.+.-|.++|++.+.+.+.|..+. +++...++||...
T Consensus 79 ~v~~L~eMGF~~~~a~~AL~~~~--------nd~erAlewL~~~ 114 (118)
T 4ae4_A 79 LMSKFKEMGFELKDIKEVLLLHN--------NDQDNALEDLMAR 114 (118)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTT--------TCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHHHh
Confidence 46677788888888888876642 3466677777543
No 12
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=78.62 E-value=3 Score=42.62 Aligned_cols=46 Identities=26% Similarity=0.387 Sum_probs=36.3
Q ss_pred CccCHHHHHHHHHHCCCChhhHHHHHhhCCcccccCcccchHHHHHHHHHcCCCc
Q 010686 223 NVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPN 277 (504)
Q Consensus 223 ~~~~l~~~l~fL~slGls~~~l~kil~~~P~lL~~s~e~~L~p~v~fL~~lGls~ 277 (504)
........++.|..+|+++.++.+.+... . ++...-++||.. |++.
T Consensus 164 ~g~~~~~~i~~l~~MGf~~~~~~~AL~a~-------~-nn~~~A~e~L~~-gip~ 209 (368)
T 1oqy_A 164 TGSEYETMLTEIMSMGYERERVVAALRAS-------Y-NNPHRAVEYLLT-GIPG 209 (368)
T ss_dssp CTTTHHHHHHHHHTTTCCSHHHHHHHHHS-------C-SSTTHHHHTTTT-SSTT
T ss_pred CCcchHHHHHHHHHcCCCHHHHHHHHHHc-------C-CCHHHHHHHHHh-CCCc
Confidence 34578899999999999999999988753 2 577888999953 5654
No 13
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=72.33 E-value=4.4 Score=29.79 Aligned_cols=33 Identities=18% Similarity=0.350 Sum_probs=26.2
Q ss_pred ccccccccccccchHHHHHHHHHhcCChHHHHHHHHh
Q 010686 360 KHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRS 396 (504)
Q Consensus 360 ~~P~iL~~s~e~~L~~kv~fL~~lG~s~~ev~~~v~r 396 (504)
..|.+-.. .+..|++||++-|++.+||..++.+
T Consensus 21 ~dp~V~~s----p~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 21 QNSRVRQS----PLATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HCTTGGGS----CHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CChhhhcC----CHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 46666543 4788999999999999999888765
No 14
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Probab=66.42 E-value=9.5 Score=42.03 Aligned_cols=22 Identities=5% Similarity=-0.176 Sum_probs=13.4
Q ss_pred ccCCCCCccccccccccchhhh
Q 010686 156 TYYNSKDVDQRGKVMTRNATEN 177 (504)
Q Consensus 156 ~g~~~~~~~~~~~l~~~~~~~~ 177 (504)
+||+.-++-.|+.=.|..+...
T Consensus 287 ~gls~~qvvaIAsn~GGkQALe 308 (1047)
T 3ugm_A 287 HGLTPDQVVAIASHGGGKQALE 308 (1047)
T ss_dssp HCCCHHHHHHHHSSTTHHHHHH
T ss_pred ccCCHHHHHHHHhcCchHHHHH
Confidence 7888877776554445544433
No 15
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Probab=64.41 E-value=16 Score=40.28 Aligned_cols=22 Identities=5% Similarity=-0.127 Sum_probs=15.0
Q ss_pred cccCCCCCccccccccccchhh
Q 010686 155 DTYYNSKDVDQRGKVMTRNATE 176 (504)
Q Consensus 155 ~~g~~~~~~~~~~~l~~~~~~~ 176 (504)
.+||+..++-.|+.=.|..+..
T Consensus 252 ~~gls~~qvVaIAsn~GGkQAL 273 (1047)
T 3ugm_A 252 AHGLPPDQVVAIASNIGGKQAL 273 (1047)
T ss_dssp HSCCCHHHHHHHHSSTTHHHHH
T ss_pred ccCCCHHHHHHHHhcCcchHHH
Confidence 3899999988766644554443
No 16
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=64.07 E-value=7 Score=28.73 Aligned_cols=24 Identities=13% Similarity=0.234 Sum_probs=21.2
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHh
Q 010686 192 WLPLLDYLSTFGLKESHFIQMYER 215 (504)
Q Consensus 192 ~~~vl~fL~slG~s~~~I~~il~r 215 (504)
+...++||++.|++.++|..++.+
T Consensus 30 ~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 30 LATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHc
Confidence 557899999999999999998876
No 17
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=61.51 E-value=9.3 Score=29.56 Aligned_cols=34 Identities=18% Similarity=0.326 Sum_probs=27.2
Q ss_pred ccccccccccccchHHHHHHHHHhcCChHHHHHHHHhc
Q 010686 360 KHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSL 397 (504)
Q Consensus 360 ~~P~iL~~s~e~~L~~kv~fL~~lG~s~~ev~~~v~r~ 397 (504)
.+|.+-.. .+..|+.||++-|++.+||..++.+.
T Consensus 26 qdp~V~~s----p~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 26 QNSRVRQS----PLATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp CSTTGGGS----CHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CChhhhhC----CHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 46766543 47889999999999999998888774
No 18
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=55.39 E-value=7.4 Score=39.72 Aligned_cols=42 Identities=17% Similarity=0.419 Sum_probs=30.7
Q ss_pred ChHHHHHHHHhCCCCHHHHHHHHHhcCCccccCccCHHHHHHHHHHCCCC
Q 010686 191 KWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVK 240 (504)
Q Consensus 191 ~~~~vl~fL~slG~s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~slGls 240 (504)
.....|+.|.++||++.++.+.++.. ..++...++||.+ |+.
T Consensus 167 ~~~~~i~~l~~MGf~~~~~~~AL~a~-------~nn~~~A~e~L~~-gip 208 (368)
T 1oqy_A 167 EYETMLTEIMSMGYERERVVAALRAS-------YNNPHRAVEYLLT-GIP 208 (368)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHS-------CSSTTHHHHTTTT-SST
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHc-------CCCHHHHHHHHHh-CCC
Confidence 35577999999999999999998763 1255566777754 444
No 19
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=53.38 E-value=21 Score=25.27 Aligned_cols=39 Identities=18% Similarity=0.288 Sum_probs=26.3
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHhccchhccCcccchHHHHHHHHH
Q 010686 372 GLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLIN 418 (504)
Q Consensus 372 ~L~~kv~fL~~lG~s~~ev~~~v~r~P~iL~~SlE~~L~pk~~fL~~ 418 (504)
....++.-|.+|||+.+++...+..+ ..++..-++||..
T Consensus 7 ~~~~~i~~L~~MGF~~~~a~~AL~~~--------~~n~e~A~e~L~~ 45 (49)
T 1ify_A 7 EYETMLTEIMSMGYERERVVAALRAS--------YNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHTT--------TSCSHHHHHHHHH
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHh
Confidence 34567778888888888887777654 2345556666654
No 20
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=51.30 E-value=11 Score=33.37 Aligned_cols=7 Identities=29% Similarity=0.748 Sum_probs=3.1
Q ss_pred ccccccc
Q 010686 41 AKILKTN 47 (504)
Q Consensus 41 ~~~~~~~ 47 (504)
+|+.+..
T Consensus 86 ~rL~k~~ 92 (150)
T 2kmw_A 86 TRLLKSE 92 (150)
T ss_dssp SCSBSCC
T ss_pred cccccCC
Confidence 3444443
No 21
>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A {Saccharomyces cerevisiae}
Probab=50.95 E-value=3.2 Score=46.24 Aligned_cols=14 Identities=14% Similarity=0.422 Sum_probs=0.0
Q ss_pred cccccccccCCCCC
Q 010686 47 NRKSRYGQTLSLYD 60 (504)
Q Consensus 47 ~~~~~~~~~~~~~~ 60 (504)
.|+-+++....+-|
T Consensus 665 ~~~~kr~ks~~lld 678 (956)
T 4aco_A 665 SRRTKRPKQIRLLS 678 (956)
T ss_dssp --------------
T ss_pred ccccccccCCCccc
Confidence 34433333333333
No 22
>3hou_D DNA-directed RNA polymerase II subunit RPB4; RNA polymerase II, metal-binding, transcription bubble; HET: BRU; 3.20A {Saccharomyces cerevisiae} PDB: 1nt9_D 1y1w_D 1y1y_D 1y77_D* 2b63_D* 2b8k_D 2ja5_D* 2ja6_D* 2ja7_D* 2ja8_D* 2r7z_D 2r92_D 2r93_D 1y1v_D* 3fki_D 3h3v_E 2vum_D* 3hov_D* 3how_D* 3hox_D* ...
Probab=50.71 E-value=16 Score=34.41 Aligned_cols=50 Identities=20% Similarity=0.236 Sum_probs=32.4
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHhcCCccccCccCHHHHHHHHHHCC--CChhhHHHHH
Q 010686 192 WLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVG--VKQRDVRRIL 248 (504)
Q Consensus 192 ~~~vl~fL~slG~s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~slG--ls~~~l~kil 248 (504)
...+-++|...|+.+-+++.|..-+| +++.+.-.++-++. +++.+|..|+
T Consensus 160 v~aVrELL~~~gLheFEiAqLANLcP-------eTaDEARALIPSL~~k~sDEeLqeIL 211 (221)
T 3hou_D 160 VGAVIQLLKSTGLHPFEVAQLGSLAC-------DTADEAKTLIPSLNNKISDDELERIL 211 (221)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHSCC-------CSHHHHHHHCTTCTTSSCHHHHHHHH
T ss_pred HHHHHHHHHhcCCChHHhheecccCC-------CCHHHHHHHHHhhcccCCHHHHHHHH
Confidence 33455677788999999988876555 34555555555543 5666666655
No 23
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=49.69 E-value=16 Score=28.29 Aligned_cols=25 Identities=12% Similarity=0.230 Sum_probs=22.4
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHhc
Q 010686 192 WLPLLDYLSTFGLKESHFIQMYERH 216 (504)
Q Consensus 192 ~~~vl~fL~slG~s~~~I~~il~r~ 216 (504)
+...++||++.|++.++|..++.+.
T Consensus 35 ~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 35 LATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 5578999999999999999999874
No 24
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=48.07 E-value=23 Score=25.55 Aligned_cols=41 Identities=15% Similarity=0.271 Sum_probs=23.1
Q ss_pred ccchHHHHHHHHHhcC-ChHHHHHHHHhccchhccCcccchHHHHHHHHH
Q 010686 370 DDGLLPRINFLRSIGM-RNSDILKVLRSLTQVLSLSLEDNLKPKYTYLIN 418 (504)
Q Consensus 370 e~~L~~kv~fL~~lG~-s~~ev~~~v~r~P~iL~~SlE~~L~pk~~fL~~ 418 (504)
+..+..+++-|.+||| +.+.+..++..+ ...+..-+++|..
T Consensus 8 e~~~~~~l~~L~~MGF~~~~~~~~AL~~t--------~gnve~Ave~L~~ 49 (53)
T 2knz_A 8 EVRFQQQLEQLNSMGFINREANLQALIAT--------GGDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHHH--------TSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHh--------CCCHHHHHHHHHH
Confidence 3455667777777777 555555554433 2345555555543
No 25
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=47.76 E-value=32 Score=27.39 Aligned_cols=41 Identities=20% Similarity=0.102 Sum_probs=32.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhccchhccCcccchHHHHHHHHHHhC
Q 010686 373 LLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELH 421 (504)
Q Consensus 373 L~~kv~fL~~lG~s~~ev~~~v~r~P~iL~~SlE~~L~pk~~fL~~~mg 421 (504)
-..+|.-|..|||+.+.+..+++.+ ...+..-++||....+
T Consensus 29 ~ee~I~~Lv~MGF~~~~A~~AL~~t--------~gdve~A~e~L~sh~~ 69 (83)
T 1veg_A 29 SQESINQLVYMGFDTVVAEAALRVF--------GGNVQLAAQTLAHHGG 69 (83)
T ss_dssp CHHHHHHHHHHSCCHHHHHHHHHHT--------TTCHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHhCCC
Confidence 3578888999999999988887765 3558888899988766
No 26
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=47.06 E-value=31 Score=24.85 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=29.9
Q ss_pred CChHHHHHHHHhCCC-CHHHHHHHHHhcCCccccCccCHHHHHHHHHHCCC
Q 010686 190 EKWLPLLDYLSTFGL-KESHFIQMYERHMPSLQINVCSARERLEYLLSVGV 239 (504)
Q Consensus 190 ~~~~~vl~fL~slG~-s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~slGl 239 (504)
......++-|.++|| +...+.+++... -.++...+++|.+.+.
T Consensus 9 ~~~~~~l~~L~~MGF~~~~~~~~AL~~t-------~gnve~Ave~L~~~~~ 52 (53)
T 2knz_A 9 VRFQQQLEQLNSMGFINREANLQALIAT-------GGDINAAIERLLGSQL 52 (53)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHH-------TSCHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHh-------CCCHHHHHHHHHHcCC
Confidence 345567888999999 777767766542 1367788888877553
No 27
>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}
Probab=46.44 E-value=43 Score=34.17 Aligned_cols=180 Identities=10% Similarity=0.134 Sum_probs=87.9
Q ss_pred HHHHhCCCCHHHHHHHHHhcCCccccCccCHHHHHHHHHH--CCCChhhHHHHHhhCCcccccCcccchHHHHHHHHH--
Q 010686 197 DYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLS--VGVKQRDVRRILLRQPQILEYTVENNLESHVAFLIS-- 272 (504)
Q Consensus 197 ~fL~slG~s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~s--lGls~~~l~kil~~~P~lL~~s~e~~L~p~v~fL~~-- 272 (504)
+-|-..||++++|..| ++||+.|. .+..++.-|.. -+++.++|..|-..+-..... .-+.+...-|..
T Consensus 34 ~~l~~~g~t~~~i~~i-s~~~~al~----~va~~y~~l~aal~~lt~~~iV~ia~~~~g~~Al---~a~~~~~~~L~~~p 105 (463)
T 4hpz_A 34 EALVGHGFTHAHIVAL-SQHPAALG----TVAVKYQDMIAALPEATHEAIVGVGKQWSGACAL---EALLTVAGELRGPP 105 (463)
T ss_dssp HHHHHTTCCHHHHHHH-TTSTHHHH----HHHTTHHHHHHHSTTCCHHHHHHHHTSTTTTHHH---HHHHHHHHHHHSTT
T ss_pred HHHHhcCCCHHHHHHh-hccHhHHH----HHHHhhHHHHhhccccCHHHHHHHHhccchHHHH---HHHHHHHHHhhcCc
Confidence 3456678888877775 34554332 22222222221 466777777776665443322 134444445553
Q ss_pred cCCCchhhhhHhhhcCcccccccccchhHHHHHHHH-HhCCChhHHHHHHhhCccceeccccccchhhhhhhhhhcCCCc
Q 010686 273 LGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVE-EVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPR 351 (504)
Q Consensus 273 lGls~~~I~klL~~~P~lL~~s~e~~l~p~v~fL~~-~lGv~~~~l~~vI~~~P~lL~~~~e~~l~~kv~fL~~~lG~s~ 351 (504)
++++..+|.+|-. +..-- -++ .+.....-|.. -+++++.++..|-...-.-=. . +.+......|...+|+++
T Consensus 106 ~~l~~~qiv~IA~-~Gg~~--Ale-av~~~~~~L~~apl~Lsp~qvVaIAsn~GGkqA--L-eaV~~llpvL~~a~~Ls~ 178 (463)
T 4hpz_A 106 LQLDTGQLLKIAK-RGGVT--AVE-VHHTWRNALTGAPLNLTPDQVVAIASNIGGKQA--L-ETVQRLLPVLCQDHGLTP 178 (463)
T ss_dssp TCCCHHHHHHHHH-HHHHH--HHH-HHHHTHHHHHSTTTCCCHHHHHHHHSSTTHHHH--H-HHHHHHHHHHHHHHCCCH
T ss_pred cCCCHHHHHHHHh-hCcHH--HHH-HHHHHHHHHhCCCcCCCHHHHHHHHhcCccHHH--H-HHHHHHHHHHhhhcCCCH
Confidence 4777777777665 22100 011 12222222221 157777777776543211000 0 123334444544578888
Q ss_pred hhHHHhhhccccccccccccchHHHHHHHH-HhcCChHHHHHHH
Q 010686 352 DDVVKMVTKHPQLLHYSIDDGLLPRINFLR-SIGMRNSDILKVL 394 (504)
Q Consensus 352 ~~v~~ml~~~P~iL~~s~e~~L~~kv~fL~-~lG~s~~ev~~~v 394 (504)
+++..|-...-.-= -. +.+......|. -.|++.++|..+-
T Consensus 179 ~qVVaIAsn~GGkQ--AL-eaV~~llpvl~~~~~Ls~aqVVaIA 219 (463)
T 4hpz_A 179 QQVVAIASNGGGKQ--AL-ETVQRLLPVLCQAHGLTPDQVVAIA 219 (463)
T ss_dssp HHHHHHHTSTTHHH--HH-HHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHhhcCchHH--HH-HHHHHHHHHhhccccCCHHHHHHHh
Confidence 88877654321100 00 12334444454 3788888886653
No 28
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=46.11 E-value=25 Score=23.93 Aligned_cols=23 Identities=13% Similarity=0.247 Sum_probs=15.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHhc
Q 010686 375 PRINFLRSIGMRNSDILKVLRSL 397 (504)
Q Consensus 375 ~kv~fL~~lG~s~~ev~~~v~r~ 397 (504)
.+++-|.+|||+.+++.+.+..+
T Consensus 6 ~~i~~L~~MGF~~~~a~~AL~~~ 28 (43)
T 2g3q_A 6 LAVEELSGMGFTEEEAHNALEKC 28 (43)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 45666777777777766665543
No 29
>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A {Saccharomyces cerevisiae}
Probab=45.07 E-value=4.5 Score=45.11 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=0.0
Q ss_pred cccccccccccCCCCCCCCcccCC
Q 010686 45 KTNRKSRYGQTLSLYDDDSEEEGE 68 (504)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~ 68 (504)
+.+|+..-| -+...|++|||+++
T Consensus 667 ~~kr~ks~~-lldi~~~s~e~d~e 689 (956)
T 4aco_A 667 RTKRPKQIR-LLSIADSSDESSTE 689 (956)
T ss_dssp ------------------------
T ss_pred ccccccCCC-cccccccccccccc
Confidence 334444433 44555555444433
No 30
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=44.45 E-value=23 Score=27.50 Aligned_cols=40 Identities=18% Similarity=0.276 Sum_probs=28.9
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHhccchhccCcccchHHHHHHHHH
Q 010686 371 DGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLIN 418 (504)
Q Consensus 371 ~~L~~kv~fL~~lG~s~~ev~~~v~r~P~iL~~SlE~~L~pk~~fL~~ 418 (504)
.....+|+-|.+|||+.+++...+..+ ..++..-++||..
T Consensus 27 ~~~ee~I~~L~eMGF~r~~a~~AL~~~--------~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 27 AASEEQIQKLVAMGFDRTQVEVALAAA--------DDDLTVAVEILMS 66 (73)
T ss_dssp CCCHHHHHHHHTTTCCHHHHHHHHHHH--------TSCHHHHHHHHHT
T ss_pred cccHHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHH
Confidence 446778888888888888888777765 3456666777765
No 31
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.88 E-value=37 Score=25.27 Aligned_cols=39 Identities=18% Similarity=0.383 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccchhccCcccchHHHHHHHHHHh
Q 010686 374 LPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINEL 420 (504)
Q Consensus 374 ~~kv~fL~~lG~s~~ev~~~v~r~P~iL~~SlE~~L~pk~~fL~~~m 420 (504)
..++.-|.+|||+.+.+.+.+..+ ..++..-++||...+
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~t--------~~nve~A~e~L~~~~ 48 (63)
T 2dak_A 10 EDCVTTIVSMGFSRDQALKALRAT--------NNSLERAVDWIFSHI 48 (63)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT--------TSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHhCC
Confidence 457777888888888887777665 234666777777654
No 32
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=43.60 E-value=36 Score=25.50 Aligned_cols=38 Identities=13% Similarity=0.248 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccchhccCcccchHHHHHHHHHH
Q 010686 374 LPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINE 419 (504)
Q Consensus 374 ~~kv~fL~~lG~s~~ev~~~v~r~P~iL~~SlE~~L~pk~~fL~~~ 419 (504)
..+|+-|..|||+.+++..++..+ ..++..-++||...
T Consensus 10 ~~~I~~L~~MGF~~~~a~~AL~~~--------~~nve~A~e~L~~~ 47 (63)
T 1wji_A 10 EKALKHITEMGFSKEASRQALMDN--------GNNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHT--------TSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHHC
Confidence 456777888888888877766654 34566667777664
No 33
>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}
Probab=42.91 E-value=57 Score=33.27 Aligned_cols=144 Identities=13% Similarity=0.184 Sum_probs=58.3
Q ss_pred CCCCHHHHHHHHHhcCCccccCccCHHHHHHHHHH-CCCChhhHHHHHhhCCcccccCcccchHHHHHHHH-HcCCCchh
Q 010686 202 FGLKESHFIQMYERHMPSLQINVCSARERLEYLLS-VGVKQRDVRRILLRQPQILEYTVENNLESHVAFLI-SLGIPNSK 279 (504)
Q Consensus 202 lG~s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~s-lGls~~~l~kil~~~P~lL~~s~e~~L~p~v~fL~-~lGls~~~ 279 (504)
+|+|++++..|-+..- - .--++.+...+..|.. .|++.+++..|-...-.- .-+ +.+....-.|. ..|++..+
T Consensus 174 ~~Ls~~qVVaIAsn~G-G-kQALeaV~~llpvl~~~~~Ls~aqVVaIAsn~GGk--QAL-eaV~~llpvl~~~~gls~aq 248 (463)
T 4hpz_A 174 HGLTPQQVVAIASNGG-G-KQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGK--QAL-ETVQRLLPVLCQDHGLTPQQ 248 (463)
T ss_dssp HCCCHHHHHHHHTSTT-H-HHHHHHHHHHHHHHHHHHCCCHHHHHHHHSSTTHH--HHH-HHHHHHHHHHHHHSCCCHHH
T ss_pred cCCCHHHHHHHhhcCc-h-HHHHHHHHHHHHHhhccccCCHHHHHHHhhccccH--HHH-HHHHhhhhhhhhhccCCHHH
Confidence 6666666666543210 0 0001223333334433 566666666655422100 000 11222222332 35677766
Q ss_pred hhhHhhhcCcccccccccchhHHHHHHHHHhCCChhHHHHHHhhCc--cceeccccccchhhhhhhhhhcCCCchhHHHh
Q 010686 280 IGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSP--QVLVQRIDISWNTRCIFLSKELGAPRDDVVKM 357 (504)
Q Consensus 280 I~klL~~~P~lL~~s~e~~l~p~v~fL~~~lGv~~~~l~~vI~~~P--~lL~~~~e~~l~~kv~fL~~~lG~s~~~v~~m 357 (504)
|.+|-.....--. ++ .+..-.-.|.+.+|++..++..|-...- +-| +.+.+-.-.|....|++.++|..|
T Consensus 249 VVaIAsn~GGkQA--Le-aV~~llP~L~~~~gls~~qVVaIAsN~GGkQAL-----eaV~~l~p~Lr~~~~ls~~qVVaI 320 (463)
T 4hpz_A 249 VVAIASNIGGKQA--LE-TVQRLLPVLCQDHGLTPDQVVAIASNDGGKQAL-----ETVQRLLPVLCQDHGLTPEQVVAI 320 (463)
T ss_dssp HHHHHSSTTHHHH--HH-HHHHHHHHHHHTTCCCHHHHHHHHTSTTHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHhcccchHHH--HH-HHHhhchhhhhccCCCHHHhhhhhcCccHHHHH-----HHHHHHhHHHHhhcCCCHHHhhhh
Confidence 6665433211000 01 1222223333346777766666544321 000 012222223322367777776555
Q ss_pred h
Q 010686 358 V 358 (504)
Q Consensus 358 l 358 (504)
-
T Consensus 321 A 321 (463)
T 4hpz_A 321 A 321 (463)
T ss_dssp H
T ss_pred h
Confidence 3
No 34
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 4gjr_A* 4gg4_A* 4gjp_A* 3v6p_A 2kq5_A
Probab=42.19 E-value=2e+02 Score=29.65 Aligned_cols=119 Identities=12% Similarity=0.175 Sum_probs=62.7
Q ss_pred HHHHh-CCCCHHHHHHHHHhcCCccccCccCHHHHHHHHHH-CCCChhhHHHHHhhCCcccccCcccchHHHHHHHH-Hc
Q 010686 197 DYLST-FGLKESHFIQMYERHMPSLQINVCSARERLEYLLS-VGVKQRDVRRILLRQPQILEYTVENNLESHVAFLI-SL 273 (504)
Q Consensus 197 ~fL~s-lG~s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~s-lGls~~~l~kil~~~P~lL~~s~e~~L~p~v~fL~-~l 273 (504)
--|+. +|++++++..|-+..-- .--++.+...+..|.. .|++.+++..|-...-.- .-+ ..+...+-.|. ..
T Consensus 93 p~L~~a~gLs~~qVVaIAsn~GG--kqALe~V~~~lpvL~~~~~Ls~~qVVaIAsn~GGk--QAL-eaV~~llpvL~~a~ 167 (499)
T 3v6t_A 93 PVLCQAHGLTPQQVVAIASHDGG--KQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGK--QAL-ETVQALLPVLCQAH 167 (499)
T ss_dssp HHHHHHSCCCHHHHHHHHSSTTH--HHHHHHHHHHHHHHHHTSCCCHHHHHHHHSSTTHH--HHH-HHHHHHHHHHHHTS
T ss_pred HHHHHhcCCCHHHhhhhhhcCcc--HHHHHHHHHhhHHhhhhcCCCHHHhHHHhhcCCcH--HHH-HHHHHhhHHHHHhc
Confidence 34444 89999998887653100 0001234444455554 788998888775432100 001 22333334454 37
Q ss_pred CCCchhhhhHhhhcCcccccccccchhHHHHHHHHHhCCChhHHHHHHhh
Q 010686 274 GIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQL 323 (504)
Q Consensus 274 Gls~~~I~klL~~~P~lL~~s~e~~l~p~v~fL~~~lGv~~~~l~~vI~~ 323 (504)
|++.++|.+|-.....-- -++ .+..-.-.|.+.+|+++.++..|-..
T Consensus 168 gls~~qVvaIAsN~GGkQ--ALe-aV~~llpvl~~~~gls~~qVVaiAsn 214 (499)
T 3v6t_A 168 GLTPEQVVAIASNGGGKQ--ALE-TVQRLLPVLCQAHGLTPQQVVAIASN 214 (499)
T ss_dssp CCCHHHHHHHHSSTTHHH--HHH-HHHHHHHHHHHHHCCCHHHHHHHHSS
T ss_pred CCCHHHHHHHhcccchHH--HHH-HHHHhhhhHHhhccCCHHHHHHHhhc
Confidence 899888887754322110 011 13333344444578888888776543
No 35
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=41.76 E-value=38 Score=24.23 Aligned_cols=27 Identities=15% Similarity=0.288 Sum_probs=16.7
Q ss_pred ccchHHHHHHHHHhcC-ChHHHHHHHHh
Q 010686 370 DDGLLPRINFLRSIGM-RNSDILKVLRS 396 (504)
Q Consensus 370 e~~L~~kv~fL~~lG~-s~~ev~~~v~r 396 (504)
+.....+++-|.+||| +.+.+..++..
T Consensus 9 ~~~~~~~l~~L~~MGF~~~~~~~~AL~~ 36 (52)
T 2jy5_A 9 EVRFQQQLEQLSAMGFLNREANLQALIA 36 (52)
T ss_dssp TTTTHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3456677777777777 55555554443
No 36
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=39.39 E-value=47 Score=25.62 Aligned_cols=38 Identities=16% Similarity=0.291 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccchhccCcccchHHHHHHHHHH
Q 010686 374 LPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINE 419 (504)
Q Consensus 374 ~~kv~fL~~lG~s~~ev~~~v~r~P~iL~~SlE~~L~pk~~fL~~~ 419 (504)
..+++-|.+|||+.+.+.+.++.+ ..++..-++||.+.
T Consensus 30 ~~~v~~L~~MGF~~~~a~~AL~~t--------~~nve~Ave~L~~~ 67 (73)
T 1wiv_A 30 QSSVDTLLSFGFAEDVARKALKAS--------GGDIEKATDWVFNN 67 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT--------TSCHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHhC
Confidence 567888889999998888777654 34566677777654
No 37
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=37.99 E-value=28 Score=27.04 Aligned_cols=52 Identities=12% Similarity=0.259 Sum_probs=33.6
Q ss_pred HHHHHHhCCCCHHHHHHHHHhcCCcccc-Cc-cCHHH--HHHHHHHCCCChhhHHHHHhh
Q 010686 195 LLDYLSTFGLKESHFIQMYERHMPSLQI-NV-CSARE--RLEYLLSVGVKQRDVRRILLR 250 (504)
Q Consensus 195 vl~fL~slG~s~~~I~~il~r~P~lL~~-~~-~~l~~--~l~fL~slGls~~~l~kil~~ 250 (504)
.++||.++|++.....+.... +.- .. +++.+ .-+.|+.+|+...+|.+|+..
T Consensus 5 Wf~FFl~aGv~~~~c~rYA~~----F~~~ri~e~mL~Dl~~~~Lr~LGi~eGDIIrVmk~ 60 (72)
T 3idw_A 5 WFEFFLNCGVDVSNCQRYTIN----FDREQLTEDMMPDINNSMLRTLGLREGDIVRVMKH 60 (72)
T ss_dssp HHHHHHHTTCCHHHHHHHHHH----HHHTTCCGGGGGGCCHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHH----HHHccCCHHHHhhCCHHHHHHcCCchhhHHHHHHH
Confidence 488999999998877665433 110 01 12222 237899999998888877653
No 38
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=36.03 E-value=62 Score=21.18 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=15.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhc
Q 010686 374 LPRINFLRSIGMRNSDILKVLRSL 397 (504)
Q Consensus 374 ~~kv~fL~~lG~s~~ev~~~v~r~ 397 (504)
..+++-|.+|||+.+++...+..+
T Consensus 5 ~~~i~~L~~mGf~~~~a~~AL~~~ 28 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQALDAA 28 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc
Confidence 456677777788777766655543
No 39
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=34.90 E-value=87 Score=24.95 Aligned_cols=44 Identities=11% Similarity=0.065 Sum_probs=31.1
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHhcCCccccCccCHHHHHHHHH-HCC
Q 010686 192 WLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLL-SVG 238 (504)
Q Consensus 192 ~~~vl~fL~slG~s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~-slG 238 (504)
+..+-+|-+.+|+++.+|..|-..||.-+. +...+.+.-|. ..|
T Consensus 12 ~~~wK~~~R~LGlse~~Id~I~~~~~~d~~---Eq~~qmL~~W~~~~g 56 (86)
T 3oq9_A 12 IQEAKKFARENNIKEGKIDEIMHDSIQDTA---EQKVQLLLCWYQSHG 56 (86)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHTCTTCCT---THHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCCCHhHHHHHHHhCCCChH---HHHHHHHHHHHHHhC
Confidence 556677889999999999999888876432 45555555554 344
No 40
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=34.71 E-value=66 Score=24.19 Aligned_cols=39 Identities=13% Similarity=0.290 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccchhccCcccchHHHHHHHHHHh
Q 010686 374 LPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINEL 420 (504)
Q Consensus 374 ~~kv~fL~~lG~s~~ev~~~v~r~P~iL~~SlE~~L~pk~~fL~~~m 420 (504)
...|+-|..|||+.+++.+.++.. ..+|..-.++|-..+
T Consensus 20 ~e~V~~LvsMGFs~~qA~kALKat--------~~NvErAaDWLFSH~ 58 (63)
T 1wgn_A 20 RQCVETVVNMGYSYECVLRAMKKK--------GENIEQILDYLFAHS 58 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH--------CSCHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHhCC
Confidence 456888889999999988888776 466777777776543
No 41
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=33.42 E-value=75 Score=23.03 Aligned_cols=26 Identities=15% Similarity=0.161 Sum_probs=17.2
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHhc
Q 010686 372 GLLPRINFLRSIGMRNSDILKVLRSL 397 (504)
Q Consensus 372 ~L~~kv~fL~~lG~s~~ev~~~v~r~ 397 (504)
.+...|+-|.+|||+.+++.+.+...
T Consensus 10 ~~~~~Ia~Lm~mGFsr~~ai~AL~~a 35 (52)
T 2ooa_A 10 NVDAKIAKLMGEGYAFEEVKRALEIA 35 (52)
T ss_dssp -CHHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred ChHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 34467777777888887777665543
No 42
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.89 E-value=76 Score=24.47 Aligned_cols=40 Identities=10% Similarity=0.135 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccchhccCccc-chHHHHHHHHHHhC
Q 010686 374 LPRINFLRSIGMRNSDILKVLRSLTQVLSLSLED-NLKPKYTYLINELH 421 (504)
Q Consensus 374 ~~kv~fL~~lG~s~~ev~~~v~r~P~iL~~SlE~-~L~pk~~fL~~~mg 421 (504)
...++-|.+|||+.+.+.+++..+ .. .+..-++||.+.+.
T Consensus 10 e~~v~~L~~MGF~~~~a~~AL~~t--------~n~~ve~A~ewL~~~~~ 50 (74)
T 2dag_A 10 ESVIIQLVEMGFPMDACRKAVYYT--------GNSGAEAAMNWVMSHMD 50 (74)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHH--------TSCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh--------CCCCHHHHHHHHHhCCC
Confidence 456777888899888887777654 22 47777888887654
No 43
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.67 E-value=80 Score=24.95 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccchhccCcccchHHHHHHHHHHhC
Q 010686 374 LPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELH 421 (504)
Q Consensus 374 ~~kv~fL~~lG~s~~ev~~~v~r~P~iL~~SlE~~L~pk~~fL~~~mg 421 (504)
...++-|.+|||+.+.+.+++..+ ..++..-++||.+.+.
T Consensus 30 e~~i~~L~~MGF~~~~a~~AL~~t--------~~nve~A~ewL~~~~~ 69 (83)
T 2dai_A 30 EAALRQLTEMGFPENRATKALQLN--------HMSVPQAMEWLIEHAE 69 (83)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT--------TSCHHHHHHHHHHGGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHHCCC
Confidence 457788889999998888777654 2457777888887654
No 44
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=31.55 E-value=45 Score=23.52 Aligned_cols=26 Identities=35% Similarity=0.265 Sum_probs=21.0
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHhc
Q 010686 372 GLLPRINFLRSIGMRNSDILKVLRSL 397 (504)
Q Consensus 372 ~L~~kv~fL~~lG~s~~ev~~~v~r~ 397 (504)
.+...+.-|.++||+.+++.+.+...
T Consensus 3 ~~e~~I~~L~s~Gf~~~~~~rAL~ia 28 (46)
T 2oo9_A 3 QLSSEIENLMSQGYSYQDIQKALVIA 28 (46)
T ss_dssp HHHHHHHHHHHTTBCHHHHHHHHHHT
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 46778899999999999998776543
No 45
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=30.94 E-value=92 Score=22.66 Aligned_cols=25 Identities=36% Similarity=0.287 Sum_probs=18.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhc
Q 010686 373 LLPRINFLRSIGMRNSDILKVLRSL 397 (504)
Q Consensus 373 L~~kv~fL~~lG~s~~ev~~~v~r~ 397 (504)
...+|+-|.++||+.+++.+.+...
T Consensus 9 ~e~~I~~L~~lGF~r~~ai~AL~~a 33 (53)
T 2d9s_A 9 LSSEIERLMSQGYSYQDIQKALVIA 33 (53)
T ss_dssp SHHHHHHHHHHTCCHHHHHHHHHHT
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 4456778888888888877766544
No 46
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=30.39 E-value=46 Score=24.33 Aligned_cols=42 Identities=17% Similarity=0.170 Sum_probs=30.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhcCCccccCccCHHHHHHHHHHCCCCh
Q 010686 194 PLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQ 241 (504)
Q Consensus 194 ~vl~fL~slG~s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~slGls~ 241 (504)
..++-|..+||+.+.+...++. ..-..+++.++||.+++...
T Consensus 11 qmlq~L~eMGFd~erae~Alk~------Tg~~Gle~AmewL~k~~~~~ 52 (54)
T 2cos_A 11 QMLQELVNAGCDQEMAGRALKQ------TGSRSIEAALEYISKMSGPS 52 (54)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHH------HTSCCHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHH------hCcccHHHHHHHHHHhcCCC
Confidence 4478888899998888887764 22346888888888877653
No 47
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=30.37 E-value=1.6e+02 Score=26.33 Aligned_cols=85 Identities=13% Similarity=0.076 Sum_probs=57.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhcCCccccCccCHHHHHHHHHHCCC-ChhhHHHHHhhCCccc-ccCcccchHHHHHHHH
Q 010686 194 PLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGV-KQRDVRRILLRQPQIL-EYTVENNLESHVAFLI 271 (504)
Q Consensus 194 ~vl~fL~slG~s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~slGl-s~~~l~kil~~~P~lL-~~s~e~~L~p~v~fL~ 271 (504)
..+.+|..---|..++..-+.+. .++.+.+..+++.|...|+ ++......+.+.-.-. ..+. .....-|+
T Consensus 23 ~Al~~Ls~r~~S~~EL~~KL~~k----g~~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G~----~~I~~eL~ 94 (177)
T 3e3v_A 23 AALNYLSYQLRTRKEVEDKLRSL----DIHEDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKGP----KVIKLNLS 94 (177)
T ss_dssp HHHHHHHSSCCCHHHHHTTSGGG----TCCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCCH----HHHHHHHH
T ss_pred HHHHHhccccccHHHHHHHHHHc----CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccccH----HHHHHHHH
Confidence 34678877788888887765542 3455678899999999986 7777776665432211 1222 22234678
Q ss_pred HcCCCchhhhhHhhh
Q 010686 272 SLGIPNSKIGQIIAA 286 (504)
Q Consensus 272 ~lGls~~~I~klL~~ 286 (504)
.-|++.+.|..++..
T Consensus 95 ~KGI~~~~I~~al~~ 109 (177)
T 3e3v_A 95 KKGIDDNIAEDALIL 109 (177)
T ss_dssp TTTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHHh
Confidence 889999999888854
No 48
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=30.08 E-value=1.1e+02 Score=21.70 Aligned_cols=41 Identities=20% Similarity=0.236 Sum_probs=27.9
Q ss_pred cCCChHHHHHHHHhCCC-CHHHHHHHHHhcCCccccCccCHHHHHHHHH
Q 010686 188 LDEKWLPLLDYLSTFGL-KESHFIQMYERHMPSLQINVCSARERLEYLL 235 (504)
Q Consensus 188 ~e~~~~~vl~fL~slG~-s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~ 235 (504)
++......++-|.++|| +...+.+++... -.++...+++|.
T Consensus 8 p~~~~~~~l~~L~~MGF~~~~~~~~AL~~t-------~gn~e~A~e~L~ 49 (52)
T 2jy5_A 8 PEVRFQQQLEQLSAMGFLNREANLQALIAT-------GGDINAAIERLL 49 (52)
T ss_dssp TTTTTHHHHHHHHHTTCCCHHHHHHHHHHH-------TTCHHHHHHHHT
T ss_pred chhHHHHHHHHHHHcCCCCHHHHHHHHHHh-------CCCHHHHHHHHH
Confidence 34556778899999999 777767766542 125666677764
No 49
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=30.01 E-value=11 Score=41.31 Aligned_cols=9 Identities=0% Similarity=0.039 Sum_probs=4.2
Q ss_pred CCHHHHHHH
Q 010686 467 PTDECFCQK 475 (504)
Q Consensus 467 ~sd~~F~~~ 475 (504)
..-++|++-
T Consensus 622 ~~Sk~~i~~ 630 (649)
T 3tj1_A 622 KNYKILMKE 630 (649)
T ss_dssp HHHHHHHGG
T ss_pred ccchhhhch
Confidence 344555544
No 50
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 4gjr_A* 4gg4_A* 4gjp_A* 3v6p_A 2kq5_A
Probab=29.42 E-value=98 Score=31.87 Aligned_cols=120 Identities=11% Similarity=0.153 Sum_probs=69.2
Q ss_pred HHHHHh--CCCCHHHHHHHHHhcCCccccCccCHHHHHHHHHH-CCCChhhHHHHHhhCCcccccCcccchHHHHHHHHH
Q 010686 196 LDYLST--FGLKESHFIQMYERHMPSLQINVCSARERLEYLLS-VGVKQRDVRRILLRQPQILEYTVENNLESHVAFLIS 272 (504)
Q Consensus 196 l~fL~s--lG~s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~s-lGls~~~l~kil~~~P~lL~~s~e~~L~p~v~fL~~ 272 (504)
..-|.. +++++++|..|.+++-- - --++.+...+--|.. +|++..++..|-..+-.- .-+ ..+...+..|..
T Consensus 57 ~~~l~~apl~ls~~qvvaIA~n~GG-k-qAleaV~~l~p~L~~a~gLs~~qVVaIAsn~GGk--qAL-e~V~~~lpvL~~ 131 (499)
T 3v6t_A 57 RNALTGAPLNLTPEQVVAIASHDGG-K-QALETVQRLLPVLCQAHGLTPQQVVAIASHDGGK--QAL-ETVQRLLPVLCQ 131 (499)
T ss_dssp HHHHHSTTTCCCHHHHHHHHSSTTH-H-HHHHHHHHHHHHHHHHSCCCHHHHHHHHSSTTHH--HHH-HHHHHHHHHHHH
T ss_pred HHHhhCCCcCCCHHHHHHHHhcCCc-H-HHHHHHHHHHHHHHHhcCCCHHHhhhhhhcCccH--HHH-HHHHHhhHHhhh
Confidence 444543 89999999998764210 0 001233344444555 899999999887653210 011 234444555654
Q ss_pred -cCCCchhhhhHhhhcCcccccccccchhHHHHHHHHHhCCChhHHHHHHhh
Q 010686 273 -LGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQL 323 (504)
Q Consensus 273 -lGls~~~I~klL~~~P~lL~~s~e~~l~p~v~fL~~~lGv~~~~l~~vI~~ 323 (504)
.|++..+|..|-.....-- -++ .+..-.-.|+...|+++.++..|-..
T Consensus 132 ~~~Ls~~qVVaIAsn~GGkQ--ALe-aV~~llpvL~~a~gls~~qVvaIAsN 180 (499)
T 3v6t_A 132 AHGLTPEQVVAIASHDGGKQ--ALE-TVQALLPVLCQAHGLTPEQVVAIASN 180 (499)
T ss_dssp TSCCCHHHHHHHHSSTTHHH--HHH-HHHHHHHHHHHTSCCCHHHHHHHHSS
T ss_pred hcCCCHHHhHHHhhcCCcHH--HHH-HHHHhhHHHHHhcCCCHHHHHHHhcc
Confidence 8999999998854322110 111 23334444544589999998877553
No 51
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=29.13 E-value=38 Score=30.06 Aligned_cols=35 Identities=14% Similarity=0.095 Sum_probs=19.7
Q ss_pred cCCccccCccCHHHHHHHHHHCCCChhhHHHHHhh
Q 010686 216 HMPSLQINVCSARERLEYLLSVGVKQRDVRRILLR 250 (504)
Q Consensus 216 ~P~lL~~~~~~l~~~l~fL~slGls~~~l~kil~~ 250 (504)
.|.++..+.+.+++.+--|..-|+++++|+-++.-
T Consensus 24 ~P~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD 58 (153)
T 2xzm_O 24 SPKWLHMTPSTVVDLSVKLAKKGLTPSQIGVILRD 58 (153)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCccccCCHHHHHHHHHHHHHCCCCHHHhhhHHhh
Confidence 35555555555555555555556666666655544
No 52
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=28.90 E-value=83 Score=22.71 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=21.7
Q ss_pred cchHHHHHHHHHhcCChHH-HHHHHHhccchhccCcccchHHHHHHHHH
Q 010686 371 DGLLPRINFLRSIGMRNSD-ILKVLRSLTQVLSLSLEDNLKPKYTYLIN 418 (504)
Q Consensus 371 ~~L~~kv~fL~~lG~s~~e-v~~~v~r~P~iL~~SlE~~L~pk~~fL~~ 418 (504)
..+..+++-|.+|||+.++ ..+++... ...+..-+++|..
T Consensus 7 ~~~~~~l~~L~~MGF~d~~~n~~AL~~~--------~Gdv~~Ave~L~~ 47 (54)
T 2dah_A 7 GHFQVQLEQLRSMGFLNREANLQALIAT--------GGDVDAAVEKLRQ 47 (54)
T ss_dssp CSSHHHHHHHHHHTCCCHHHHHHHHHHH--------TSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCCcHHHHHHHHHHc--------CCCHHHHHHHHHh
Confidence 3456677777777776554 24444332 2345555555554
No 53
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.79 E-value=47 Score=23.04 Aligned_cols=24 Identities=13% Similarity=0.273 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhc
Q 010686 374 LPRINFLRSIGMRNSDILKVLRSL 397 (504)
Q Consensus 374 ~~kv~fL~~lG~s~~ev~~~v~r~ 397 (504)
..++.-|.+|||+.+.+...+..+
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~~ 33 (47)
T 2ekk_A 10 QQQLQQLMDMGFTREHAMEALLNT 33 (47)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc
Confidence 567888899999999988877765
No 54
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=28.48 E-value=1.4e+02 Score=20.90 Aligned_cols=22 Identities=9% Similarity=0.268 Sum_probs=12.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHH
Q 010686 193 LPLLDYLSTFGLKESHFIQMYE 214 (504)
Q Consensus 193 ~~vl~fL~slG~s~~~I~~il~ 214 (504)
...++-|.++||++.++.++++
T Consensus 9 ~~~i~~L~~MGF~~~~a~~AL~ 30 (49)
T 1ify_A 9 ETMLTEIMSMGYERERVVAALR 30 (49)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHH
Confidence 3455566666666666666554
No 55
>3ezq_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} SCOP: a.77.1.2 PDB: 1ddf_A
Probab=28.30 E-value=1.1e+02 Score=25.85 Aligned_cols=42 Identities=7% Similarity=0.093 Sum_probs=28.3
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHhcCCccccCccCHHHHHHHHHH
Q 010686 192 WLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLS 236 (504)
Q Consensus 192 ~~~vl~fL~slG~s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~s 236 (504)
+..+-.|-+.+|++..+|..|-..||.-.. ++....+.-|..
T Consensus 20 ~~~wK~laR~LGlse~~Id~I~~d~~~d~~---Eq~~qlLr~W~~ 61 (115)
T 3ezq_A 20 LSQVKGFVRKNGVNEAKIDEIKNDNVQDTA---EQKVQLLRNWHQ 61 (115)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHCSSCHH---HHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHhhHHHHHHcCCCChH---HHHHHHHHHHHH
Confidence 556677788899999999998888875331 344444444443
No 56
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=27.55 E-value=64 Score=24.14 Aligned_cols=37 Identities=19% Similarity=0.345 Sum_probs=23.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHhccchhccCccc-chHHHHHHHHHH
Q 010686 375 PRINFLRSIGMRNSDILKVLRSLTQVLSLSLED-NLKPKYTYLINE 419 (504)
Q Consensus 375 ~kv~fL~~lG~s~~ev~~~v~r~P~iL~~SlE~-~L~pk~~fL~~~ 419 (504)
..++-|.+|||+.+.+.+++..+ .. ++..-+++|.+.
T Consensus 21 ~~i~~L~~MGF~~~~a~~AL~~t--------~~~nve~A~ewL~~~ 58 (64)
T 2cpw_A 21 SALDVLLSMGFPRARAQKALAST--------GGRSVQTACDWLFSH 58 (64)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHT--------TTSCHHHHHHHHHSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHc--------CCCCHHHHHHHHHhC
Confidence 35667777888887777666654 22 566666666653
No 57
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=27.31 E-value=16 Score=33.82 Aligned_cols=11 Identities=0% Similarity=-0.209 Sum_probs=3.0
Q ss_pred ccccccccccC
Q 010686 46 TNRKSRYGQTL 56 (504)
Q Consensus 46 ~~~~~~~~~~~ 56 (504)
+|.+...|.+-
T Consensus 251 ~~~~~~~g~tp 261 (282)
T 1oy3_D 251 EPEDGGDKLSP 261 (282)
T ss_dssp CCCCC------
T ss_pred cCcCCCccccc
Confidence 55666666443
No 58
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=26.74 E-value=86 Score=23.05 Aligned_cols=41 Identities=15% Similarity=0.223 Sum_probs=23.2
Q ss_pred ccchHHHHHHHHHhcCC-hHHHHHHHHhccchhccCcccchHHHHHHHHH
Q 010686 370 DDGLLPRINFLRSIGMR-NSDILKVLRSLTQVLSLSLEDNLKPKYTYLIN 418 (504)
Q Consensus 370 e~~L~~kv~fL~~lG~s-~~ev~~~v~r~P~iL~~SlE~~L~pk~~fL~~ 418 (504)
+..+..+++-|.+|||+ .+.+.+++... ...+..-+++|..
T Consensus 14 e~~~~~qi~~L~~MGF~d~~~~~~AL~~~--------~gnve~Ave~L~~ 55 (58)
T 1wr1_B 14 EERYEHQLRQLNDMGFFDFDRNVAALRRS--------GGSVQGALDSLLN 55 (58)
T ss_dssp HHHTHHHHHHHHHHTCCCHHHHHHHHHHH--------TSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHh--------CCCHHHHHHHHHh
Confidence 45567777888888875 43434444432 2345555555543
No 59
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=26.00 E-value=1.3e+02 Score=21.74 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=10.6
Q ss_pred HHHHHHHHCCCChhhHHHHHh
Q 010686 229 ERLEYLLSVGVKQRDVRRILL 249 (504)
Q Consensus 229 ~~l~fL~slGls~~~l~kil~ 249 (504)
..++-|.++|++..++.+.+.
T Consensus 13 ~~Ia~Lm~mGFsr~~ai~AL~ 33 (52)
T 2ooa_A 13 AKIAKLMGEGYAFEEVKRALE 33 (52)
T ss_dssp HHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHH
Confidence 445555555555555554443
No 60
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=25.46 E-value=36 Score=30.12 Aligned_cols=34 Identities=12% Similarity=0.119 Sum_probs=17.7
Q ss_pred CCccccCccCHHHHHHHHHHCCCChhhHHHHHhh
Q 010686 217 MPSLQINVCSARERLEYLLSVGVKQRDVRRILLR 250 (504)
Q Consensus 217 P~lL~~~~~~l~~~l~fL~slGls~~~l~kil~~ 250 (504)
|.++.++.+.+++.+--|..-|+++++|+-++.-
T Consensus 23 P~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD 56 (151)
T 3u5c_N 23 PAWFKLSSESVIEQIVKYARKGLTPSQIGVLLRD 56 (151)
T ss_dssp CSSCCSCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHHHHCCCCHHHhhhHHhc
Confidence 4444455555555555555555555555555443
No 61
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.31 E-value=90 Score=27.83 Aligned_cols=36 Identities=17% Similarity=0.027 Sum_probs=21.4
Q ss_pred cCCccccCccCHHHHHHHHHHCCCChhhHHHHHhhC
Q 010686 216 HMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQ 251 (504)
Q Consensus 216 ~P~lL~~~~~~l~~~l~fL~slGls~~~l~kil~~~ 251 (504)
.|.++.++++.+++.+--|..-|+++++|+-++.-.
T Consensus 22 ~P~W~~~~~eev~~~i~klakkG~~pSqIG~~LRD~ 57 (158)
T 3j20_Q 22 PPIWVEYTVEEIENLVVKLRKEGYSTAMIGTILRDQ 57 (158)
T ss_dssp CCSSSCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHT
T ss_pred CCCCcCCCHHHHHHHHHHHHHCCCCHHHhhHHHhcc
Confidence 355555555666666666666666666666665543
No 62
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=25.05 E-value=58 Score=23.87 Aligned_cols=39 Identities=28% Similarity=0.255 Sum_probs=27.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHhccchhccCcccchHHHHHHHHH
Q 010686 372 GLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLIN 418 (504)
Q Consensus 372 ~L~~kv~fL~~lG~s~~ev~~~v~r~P~iL~~SlE~~L~pk~~fL~~ 418 (504)
-....|.-|.++||+.+++.+.+... .+.+.--..+|.+
T Consensus 6 p~e~~Ia~L~smGfsr~da~~AL~ia--------~Ndv~~AtNiLlE 44 (56)
T 2juj_A 6 QLSSEIENLMSQGYSYQDIQKALVIA--------QNNIEMAKNILRE 44 (56)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHT--------TTCSHHHHHHHHH
T ss_pred CChHHHHHHHHcCCCHHHHHHHHHHh--------cccHHHHHHHHHH
Confidence 45668899999999999998776543 3455555555554
No 63
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=24.82 E-value=2.1e+02 Score=23.84 Aligned_cols=45 Identities=13% Similarity=0.487 Sum_probs=31.7
Q ss_pred ccccchhhhhhhhhhcccCcCCChHHHHHHHHhCCCCHHHHHHHHHhcCC
Q 010686 169 VMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMP 218 (504)
Q Consensus 169 l~~~~~~~~~~p~ll~~~~~e~~~~~vl~fL~slG~s~~~I~~il~r~P~ 218 (504)
+++..++......+++.++ ..|..+ -+.+|++..+|..|-..+|.
T Consensus 17 ~~~~~~t~~~l~~Ia~~LG--~~Wk~L---AR~LGlse~dId~I~~~~p~ 61 (115)
T 2o71_A 17 ILNSSPSDRQINQLAQRLG--PEWEPM---VLSLGLSQTDIYRCKANHPH 61 (115)
T ss_dssp GGGSCCCHHHHHHHHHHCC--TTHHHH---HHHTTCCHHHHHHHHHHCTT
T ss_pred hccCCCCHHHHHHHHHHHh--hhHHHH---HHHcCCCHHHHHHHHHHCCC
Confidence 4555666666677776554 456444 45689999999999988884
No 64
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=24.80 E-value=52 Score=24.54 Aligned_cols=17 Identities=12% Similarity=0.204 Sum_probs=8.7
Q ss_pred HHhCCChhHHHHHHhhC
Q 010686 308 EEVGINEKSLGKVVQLS 324 (504)
Q Consensus 308 ~~lGv~~~~l~~vI~~~ 324 (504)
+.+|++...|.+++...
T Consensus 8 ~~aGVS~sTVSrvLng~ 24 (65)
T 1uxc_A 8 RLAGVSRTTASYVINGK 24 (65)
T ss_dssp HHHTSCHHHHHHHHHTC
T ss_pred HHHCcCHHHHHHHHcCC
Confidence 34555555555555443
No 65
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=24.75 E-value=1.1e+02 Score=22.85 Aligned_cols=38 Identities=16% Similarity=0.228 Sum_probs=22.7
Q ss_pred HHHHHHHhcCChHHHHHHHHhccchhccCcc-cchHHHHHHHHHHhC
Q 010686 376 RINFLRSIGMRNSDILKVLRSLTQVLSLSLE-DNLKPKYTYLINELH 421 (504)
Q Consensus 376 kv~fL~~lG~s~~ev~~~v~r~P~iL~~SlE-~~L~pk~~fL~~~mg 421 (504)
.++-|.+|||+.+.+.+.+... . ..+..-++||...+.
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~t--------~n~~~e~A~~wL~~h~~ 50 (64)
T 2crn_A 12 LLEPLLAMGFPVHTALKALAAT--------GRKTAEEALAWLHDHCN 50 (64)
T ss_dssp SHHHHHHTSCCHHHHHHHHHHH--------TSCCHHHHHHHHHHHSS
T ss_pred HHHHHHHcCCCHHHHHHHHHHh--------CCCCHHHHHHHHHhCCC
Confidence 4556667777777666655533 1 246666777766543
No 66
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=24.64 E-value=1.1e+02 Score=23.75 Aligned_cols=41 Identities=12% Similarity=0.310 Sum_probs=25.7
Q ss_pred ccchHHHHHHHHHhcCC-hHHHHHHHHhccchhccCcccchHHHHHHHHH
Q 010686 370 DDGLLPRINFLRSIGMR-NSDILKVLRSLTQVLSLSLEDNLKPKYTYLIN 418 (504)
Q Consensus 370 e~~L~~kv~fL~~lG~s-~~ev~~~v~r~P~iL~~SlE~~L~pk~~fL~~ 418 (504)
+..+..+++-|.+|||+ .+.+.+++... ...+..-+++|..
T Consensus 26 e~~ye~qi~qL~eMGF~dr~~~~~AL~~t--------~Gnve~Ave~L~~ 67 (74)
T 1vej_A 26 EGRYQQELEELKALGFANRDANLQALVAT--------DGDIHAAIEMLLG 67 (74)
T ss_dssp TTTSHHHHHHHHHHTCCCHHHHHHHHHHT--------TSCHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHHh--------CCCHHHHHHHHHh
Confidence 45677788888888884 45545555433 3456666666654
No 67
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=24.35 E-value=1e+02 Score=21.41 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=14.5
Q ss_pred cchHHHHHHHHHhcCCh-HHHHHHHH
Q 010686 371 DGLLPRINFLRSIGMRN-SDILKVLR 395 (504)
Q Consensus 371 ~~L~~kv~fL~~lG~s~-~ev~~~v~ 395 (504)
..+..+++-|.+|||+. +.+.+++.
T Consensus 5 ~~~~~~i~~L~~MGF~d~~~~~~AL~ 30 (46)
T 2bwb_A 5 ERYEHQLRQLNDMGFFDFDRNVAALR 30 (46)
T ss_dssp HHTHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 44566777777777753 33344443
No 68
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=24.02 E-value=1.3e+02 Score=23.10 Aligned_cols=40 Identities=13% Similarity=0.072 Sum_probs=31.6
Q ss_pred CChHHHHHHHHhCCCCHHHHHHHHHhcCCccccCccCHHHHHHHHHH
Q 010686 190 EKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLS 236 (504)
Q Consensus 190 ~~~~~vl~fL~slG~s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~s 236 (504)
......|+-|.++||+..++..+++.+ -.++...++||.+
T Consensus 27 ~~~ee~I~~L~eMGF~r~~a~~AL~~~-------~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 27 AASEEQIQKLVAMGFDRTQVEVALAAA-------DDDLTVAVEILMS 66 (73)
T ss_dssp CCCHHHHHHHHTTTCCHHHHHHHHHHH-------TSCHHHHHHHHHT
T ss_pred cccHHHHHHHHHcCCCHHHHHHHHHHh-------CCCHHHHHHHHHH
Confidence 445678999999999999999988763 1367788888875
No 69
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=23.45 E-value=40 Score=20.52 Aligned_cols=8 Identities=38% Similarity=0.538 Sum_probs=3.2
Q ss_pred cCCCCCCC
Q 010686 55 TLSLYDDD 62 (504)
Q Consensus 55 ~~~~~~~~ 62 (504)
+---+|||
T Consensus 10 rkrewddd 17 (28)
T 3ukx_C 10 RKREWDDD 17 (28)
T ss_dssp CCCCCCCS
T ss_pred hhcccccC
Confidence 33344433
No 70
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=22.53 E-value=97 Score=24.60 Aligned_cols=38 Identities=21% Similarity=0.248 Sum_probs=25.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccchhccCcccchHHHHHHHHHH
Q 010686 374 LPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINE 419 (504)
Q Consensus 374 ~~kv~fL~~lG~s~~ev~~~v~r~P~iL~~SlE~~L~pk~~fL~~~ 419 (504)
.++++-|..|||+.+.+.+++..+ ...+..-++||...
T Consensus 22 ~~~I~qL~~MGF~~~~a~~AL~~~--------n~n~e~A~ewL~~h 59 (85)
T 2dkl_A 22 SRLIKQLTDMGFPREPAEEALKSN--------NMNLDQAMSALLEK 59 (85)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT--------TSCHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHHC
Confidence 567777778888887776666433 34566677777654
No 71
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=21.65 E-value=60 Score=24.21 Aligned_cols=46 Identities=4% Similarity=0.027 Sum_probs=22.2
Q ss_pred hCCCCHHHHHHHHHhcCCccccCccCHHHHHHHHHHCCCChhhHHH
Q 010686 201 TFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRR 246 (504)
Q Consensus 201 slG~s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~slGls~~~l~k 246 (504)
..|+|.+-|.+++...+.-...+.+......+..+.+|..++...+
T Consensus 9 ~aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~lgY~pn~~a~ 54 (65)
T 1uxc_A 9 LAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAA 54 (65)
T ss_dssp HHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHHTCCCC----
T ss_pred HHCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHhCCCccHHHH
Confidence 4567777777766654411123334444445555566665554443
No 72
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=21.60 E-value=1.2e+02 Score=23.16 Aligned_cols=41 Identities=15% Similarity=0.239 Sum_probs=25.0
Q ss_pred ccchHHHHHHHHHhcCChHHH-HHHHHhccchhccCcccchHHHHHHHHH
Q 010686 370 DDGLLPRINFLRSIGMRNSDI-LKVLRSLTQVLSLSLEDNLKPKYTYLIN 418 (504)
Q Consensus 370 e~~L~~kv~fL~~lG~s~~ev-~~~v~r~P~iL~~SlE~~L~pk~~fL~~ 418 (504)
+..+...++-|.+|||+..+. .+++... ..++..-+++|..
T Consensus 16 e~~y~~ql~qL~~MGF~d~~an~~AL~at--------~Gnve~Ave~L~~ 57 (67)
T 2dna_A 16 EVRFSKEMECLQAMGFVNYNANLQALIAT--------DGDTNAAIYKLKS 57 (67)
T ss_dssp HHHTHHHHHHHHHHTCCCHHHHHHHHHHT--------TSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHc--------CCCHHHHHHHHHh
Confidence 556677777888888755543 3443332 3556666777665
No 73
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.24 E-value=1.8e+02 Score=21.60 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=25.9
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhcCCccccCccCHHHHHHHHHH
Q 010686 194 PLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLS 236 (504)
Q Consensus 194 ~vl~fL~slG~s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~s 236 (504)
..|+-|.++||+..++.+++..+ -.++...++||..
T Consensus 11 ~~I~~L~~MGF~~~~a~~AL~~~-------~~nve~A~e~L~~ 46 (63)
T 1wji_A 11 KALKHITEMGFSKEASRQALMDN-------GNNLEAALNVLLT 46 (63)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHT-------TSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh-------CCCHHHHHHHHHH
Confidence 45788888888888888877653 1267777777765
Done!