Query 010686
Match_columns 504
No_of_seqs 264 out of 1309
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 12:07:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010686.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010686hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oqya1 a.5.2.1 (A:160-200) DN 56.4 4.2 0.00031 26.4 3.0 26 372-397 3-28 (41)
2 d1wgna_ a.5.2.1 (A:) Ubiquitin 48.3 13 0.00096 26.2 4.9 38 374-419 20-57 (63)
3 d2g3qa1 a.5.2.1 (A:1339-1381) 44.3 6.6 0.00048 25.6 2.4 22 376-397 7-28 (43)
4 d1vg5a_ a.5.2.1 (A:) Rhomboid 43.7 10 0.00073 27.7 3.7 38 374-419 30-67 (73)
5 d1wiva_ a.5.2.1 (A:) Ubiquitin 43.2 18 0.0013 26.2 5.1 38 374-419 30-67 (73)
6 d1wjia_ a.5.2.1 (A:) Tudor dom 36.2 27 0.0019 24.4 5.0 39 374-420 10-48 (63)
7 d2g3qa1 a.5.2.1 (A:1339-1381) 32.4 18 0.0013 23.5 3.0 34 195-235 7-40 (43)
8 d1oqya1 a.5.2.1 (A:160-200) DN 30.6 24 0.0017 22.6 3.5 26 191-216 3-28 (41)
9 d1efaa1 a.35.1.5 (A:2-60) Lac 30.5 26 0.0019 24.2 4.0 46 345-394 10-55 (59)
10 d2hsga1 a.35.1.5 (A:2-58) Gluc 29.2 28 0.002 23.9 3.9 18 345-362 9-26 (57)
11 d1qpza1 a.35.1.5 (A:2-58) Puri 26.2 45 0.0033 22.7 4.6 45 309-358 9-53 (57)
12 d1qpza1 a.35.1.5 (A:2-58) Puri 25.7 36 0.0026 23.3 4.0 48 344-395 7-54 (57)
13 d2hsga1 a.35.1.5 (A:2-58) Gluc 23.2 51 0.0037 22.4 4.4 47 308-359 9-55 (57)
14 d2prra1 a.152.1.3 (A:5-194) Un 21.6 50 0.0036 27.4 5.0 168 191-398 18-189 (190)
15 d1whca_ a.5.2.1 (A:) UBA/UBX 3 20.7 58 0.0042 22.6 4.3 39 376-421 12-50 (64)
16 d1rw1a_ c.47.1.12 (A:) Hypothe 20.4 48 0.0035 25.3 4.3 67 193-259 14-93 (114)
17 d1uxda_ a.35.1.5 (A:) Fructose 20.3 34 0.0025 23.5 2.9 47 308-356 8-54 (59)
No 1
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=56.37 E-value=4.2 Score=26.44 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=21.7
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHhc
Q 010686 372 GLLPRINFLRSIGMRNSDILKVLRSL 397 (504)
Q Consensus 372 ~L~~kv~fL~~lG~s~~ev~~~v~r~ 397 (504)
....+|.-|.+|||+.+++...+..+
T Consensus 3 ~~e~~i~~L~~MGF~~~~a~~AL~~~ 28 (41)
T d1oqya1 3 EYETMLTEIMSMGYERERVVAALRAS 28 (41)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHS
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 46778888999999999988887765
No 2
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.27 E-value=13 Score=26.20 Aligned_cols=38 Identities=13% Similarity=0.316 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccchhccCcccchHHHHHHHHHH
Q 010686 374 LPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINE 419 (504)
Q Consensus 374 ~~kv~fL~~lG~s~~ev~~~v~r~P~iL~~SlE~~L~pk~~fL~~~ 419 (504)
...|+-|..|||+.+++.+.+..+ ..++..-++||...
T Consensus 20 e~~v~~L~~MGF~~~~a~~AL~~~--------~~n~e~A~~~Lls~ 57 (63)
T d1wgna_ 20 RQCVETVVNMGYSYECVLRAMKKK--------GENIEQILDYLFAH 57 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH--------CSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHhC
Confidence 457888888999888888777765 45677777777754
No 3
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=44.30 E-value=6.6 Score=25.63 Aligned_cols=22 Identities=14% Similarity=0.292 Sum_probs=18.4
Q ss_pred HHHHHHHhcCChHHHHHHHHhc
Q 010686 376 RINFLRSIGMRNSDILKVLRSL 397 (504)
Q Consensus 376 kv~fL~~lG~s~~ev~~~v~r~ 397 (504)
-|+-|.+|||+.++..+.+.++
T Consensus 7 ai~eL~~MGF~e~~A~~AL~k~ 28 (43)
T d2g3qa1 7 AVEELSGMGFTEEEAHNALEKC 28 (43)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHc
Confidence 4566788999999999888887
No 4
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=43.72 E-value=10 Score=27.67 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=26.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccchhccCcccchHHHHHHHHHH
Q 010686 374 LPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINE 419 (504)
Q Consensus 374 ~~kv~fL~~lG~s~~ev~~~v~r~P~iL~~SlE~~L~pk~~fL~~~ 419 (504)
...|+-|..|||+.+++.+.+..+ ..++..-++||...
T Consensus 30 ee~i~~L~~MGF~~~~a~~AL~~~--------~~n~e~A~~~Ll~~ 67 (73)
T d1vg5a_ 30 EEQIQKLVAMGFDRTQVEVALAAA--------DDDLTVAVEILMSQ 67 (73)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHH--------TSCHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHh--------CCCHHHHHHHHHhC
Confidence 556777788888888777776665 45677777777653
No 5
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=43.15 E-value=18 Score=26.21 Aligned_cols=38 Identities=16% Similarity=0.291 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccchhccCcccchHHHHHHHHHH
Q 010686 374 LPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINE 419 (504)
Q Consensus 374 ~~kv~fL~~lG~s~~ev~~~v~r~P~iL~~SlE~~L~pk~~fL~~~ 419 (504)
...|.-|.+|||+.+.+.+.+..+ ..++..-++||...
T Consensus 30 ~~~i~~L~~MGF~~~~a~~AL~~~--------~~n~e~Av~~Lls~ 67 (73)
T d1wiva_ 30 QSSVDTLLSFGFAEDVARKALKAS--------GGDIEKATDWVFNN 67 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT--------TSCHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHc--------CCCHHHHHHHHHcC
Confidence 456778888888888888777766 35677777777653
No 6
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.25 E-value=27 Score=24.37 Aligned_cols=39 Identities=13% Similarity=0.216 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccchhccCcccchHHHHHHHHHHh
Q 010686 374 LPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINEL 420 (504)
Q Consensus 374 ~~kv~fL~~lG~s~~ev~~~v~r~P~iL~~SlE~~L~pk~~fL~~~m 420 (504)
...++-|..|||+...+.+.+..+ .+.+..-++||.+.+
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~~--------~~~~e~A~~wL~~~~ 48 (63)
T d1wjia_ 10 EKALKHITEMGFSKEASRQALMDN--------GNNLEAALNVLLTSN 48 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHT--------TSCHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHHCC
Confidence 345666777888887777666654 345667777777654
No 7
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=32.43 E-value=18 Score=23.50 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=25.8
Q ss_pred HHHHHHhCCCCHHHHHHHHHhcCCccccCccCHHHHHHHHH
Q 010686 195 LLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLL 235 (504)
Q Consensus 195 vl~fL~slG~s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~ 235 (504)
.|+-|.++||+..+..+.+.++-. ++...+.+|.
T Consensus 7 ai~eL~~MGF~e~~A~~AL~k~~w-------nleaAtN~LL 40 (43)
T d2g3qa1 7 AVEELSGMGFTEEEAHNALEKCNW-------DLEAATNFLL 40 (43)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHTS-------CHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHcCC-------CHHHHHHHHH
Confidence 388999999999999999998743 4445555553
No 8
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.65 E-value=24 Score=22.57 Aligned_cols=26 Identities=8% Similarity=0.285 Sum_probs=20.1
Q ss_pred ChHHHHHHHHhCCCCHHHHHHHHHhc
Q 010686 191 KWLPLLDYLSTFGLKESHFIQMYERH 216 (504)
Q Consensus 191 ~~~~vl~fL~slG~s~~~I~~il~r~ 216 (504)
...+.|+-|.++||++.++.+.+...
T Consensus 3 ~~e~~i~~L~~MGF~~~~a~~AL~~~ 28 (41)
T d1oqya1 3 EYETMLTEIMSMGYERERVVAALRAS 28 (41)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHS
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 34567888888999988888888763
No 9
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=30.52 E-value=26 Score=24.24 Aligned_cols=46 Identities=11% Similarity=0.112 Sum_probs=22.7
Q ss_pred hhcCCCchhHHHhhhccccccccccccchHHHHHHHHHhcCChHHHHHHH
Q 010686 345 KELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVL 394 (504)
Q Consensus 345 ~~lG~s~~~v~~ml~~~P~iL~~s~e~~L~~kv~fL~~lG~s~~ev~~~v 394 (504)
+..|++...+..+|...|.+ + +++.+...+...++|+.++.+.+.+
T Consensus 10 ~~agvS~sTVSr~l~~~~~v---s-~~tr~rI~~~a~~lgY~pn~~Ar~L 55 (59)
T d1efaa1 10 EYAGVSYQTVSRVVNQASHV---S-AKTREKVEAAMAELNYIPNRVAQQL 55 (59)
T ss_dssp HTTTSCHHHHHHHHTTCSSC---C-THHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred HHHCCCHHHHHHHHCCCCcC---C-HHHHHHHHHHHHHHCCCcCHHHHHH
Confidence 45566666666666554432 2 3333333333456666555544433
No 10
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=29.17 E-value=28 Score=23.87 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=9.4
Q ss_pred hhcCCCchhHHHhhhccc
Q 010686 345 KELGAPRDDVVKMVTKHP 362 (504)
Q Consensus 345 ~~lG~s~~~v~~ml~~~P 362 (504)
+..|++...+.++|...|
T Consensus 9 ~~agvS~~TVSr~Ln~~~ 26 (57)
T d2hsga1 9 REASVSMATVSRVVNGNP 26 (57)
T ss_dssp HHTTSCHHHHHHHHTTCT
T ss_pred HHHCcCHHHHHHHhCCCC
Confidence 345555555555555444
No 11
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=26.23 E-value=45 Score=22.74 Aligned_cols=45 Identities=13% Similarity=0.119 Sum_probs=23.0
Q ss_pred HhCCChhHHHHHHhhCccceeccccccchhhhhhhhhhcCCCchhHHHhh
Q 010686 309 EVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMV 358 (504)
Q Consensus 309 ~lGv~~~~l~~vI~~~P~lL~~~~e~~l~~kv~fL~~~lG~s~~~v~~ml 358 (504)
..|++...+.+++...|.+ + ...+.+|....+++|+.+..+.+-+
T Consensus 9 ~agVS~sTVSr~ln~~~~v---s--~~tr~rV~~~a~~lgY~pn~~Ar~L 53 (57)
T d1qpza1 9 RANVSTTTVSHVINKTRFV---A--EETRNAVWAAIKELHYSPSAVARSL 53 (57)
T ss_dssp HHTSCHHHHHHHHHTCSCC---C--HHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred HHCcCHHHHHHHHCCCCcc---C--HHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 5666666666666655432 1 1223344444456666665554433
No 12
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=25.74 E-value=36 Score=23.26 Aligned_cols=48 Identities=10% Similarity=0.180 Sum_probs=33.5
Q ss_pred hhhcCCCchhHHHhhhccccccccccccchHHHHHHHHHhcCChHHHHHHHH
Q 010686 344 SKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLR 395 (504)
Q Consensus 344 ~~~lG~s~~~v~~ml~~~P~iL~~s~e~~L~~kv~fL~~lG~s~~ev~~~v~ 395 (504)
.+..|++...+.++|...|.+ + +++-+...+...++|+.++.+.+-++
T Consensus 7 A~~agVS~sTVSr~ln~~~~v---s-~~tr~rV~~~a~~lgY~pn~~Ar~Lr 54 (57)
T d1qpza1 7 AKRANVSTTTVSHVINKTRFV---A-EETRNAVWAAIKELHYSPSAVARSLK 54 (57)
T ss_dssp HHHHTSCHHHHHHHHHTCSCC---C-HHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHCcCHHHHHHHHCCCCcc---C-HHHHHHHHHHHHHHCCCCCHHHHHHh
Confidence 367899999999999877652 3 34444444555789998887766554
No 13
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=23.23 E-value=51 Score=22.40 Aligned_cols=47 Identities=19% Similarity=0.293 Sum_probs=32.4
Q ss_pred HHhCCChhHHHHHHhhCccceeccccccchhhhhhhhhhcCCCchhHHHhhh
Q 010686 308 EEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVT 359 (504)
Q Consensus 308 ~~lGv~~~~l~~vI~~~P~lL~~~~e~~l~~kv~fL~~~lG~s~~~v~~ml~ 359 (504)
+..|++...+.+++...|.+ +. ..+++|.-..+++|+.+....+.++
T Consensus 9 ~~agvS~~TVSr~Ln~~~~V---s~--~tr~rV~~aa~~lgY~pn~~A~~L~ 55 (57)
T d2hsga1 9 REASVSMATVSRVVNGNPNV---KP--STRKKVLETIERLGYRPNAVARGLA 55 (57)
T ss_dssp HHTTSCHHHHHHHHTTCTTS---CH--HHHHHHHHHHHHHTCCSCHHHHHHT
T ss_pred HHHCcCHHHHHHHhCCCCcC---CH--HHHHHHHHHHHHHCcCCCHHHHHhc
Confidence 47899999999999877643 11 2445555555788988877665543
No 14
>d2prra1 a.152.1.3 (A:5-194) Uncharacterized protein Reut_A2532 {Ralstonia eutropha [TaxId: 106590]}
Probab=21.59 E-value=50 Score=27.36 Aligned_cols=168 Identities=11% Similarity=0.099 Sum_probs=87.5
Q ss_pred ChHHHHHHH-HhCCCCHHHHHHHHHhcCCccccCccCHHHHHHHHH--HCCCChhhHHHHHhhCCcccccCcccchHHHH
Q 010686 191 KWLPLLDYL-STFGLKESHFIQMYERHMPSLQINVCSARERLEYLL--SVGVKQRDVRRILLRQPQILEYTVENNLESHV 267 (504)
Q Consensus 191 ~~~~vl~fL-~slG~s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~--slGls~~~l~kil~~~P~lL~~s~e~~L~p~v 267 (504)
...++++-+ ...|+-+ .+-+++..+|.++. ........+. .-+++.....-+..+--.+-++.. .+..+.
T Consensus 18 ~~~~~~~~~~~~~G~vp-n~~~~la~~P~~l~----~~~~~~~~~~~~~~~L~~~~~Eli~l~vs~~n~c~Y--C~~~h~ 90 (190)
T d2prra1 18 DIRQRILEVQDKAGFVP-NVFLTLAHRPDEFR----AFFAYHDALMLKDGGLTKGEREMIVVATSAANQCLY--CVVAHG 90 (190)
T ss_dssp HHHHHHHHHHHHHSSCC-HHHHHHTTSHHHHH----HHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHTTCHH--HHHHHH
T ss_pred HHHHHHHHHHHHhCCCH-HHHHHHHhCHHHHH----HHHHHHHHHHhcccCCCHHHHHHHHHHHHHHhCCch--HHHHHH
Confidence 455666655 4578766 55566666665442 1122222222 234676555555444445555554 456667
Q ss_pred HHHHHcCCCchhhhhHhhhcCcccccccccchhHHHHHHHHHhCCChhHHHHHHhhCccceeccccccchhhhhhhhhhc
Q 010686 268 AFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKEL 347 (504)
Q Consensus 268 ~fL~~lGls~~~I~klL~~~P~lL~~s~e~~l~p~v~fL~~~lGv~~~~l~~vI~~~P~lL~~~~e~~l~~kv~fL~~~l 347 (504)
..+...|++.+.+..+........ .+. ..+..+.|.. . +...|.-+. +..++.| +..
T Consensus 91 ~~~~~~g~~~~~~~~i~~~~~~~~-~~~--~~~a~l~~a~-~-----------~~~~~~~v~-------d~~~~~L-~~~ 147 (190)
T d2prra1 91 AILRIYEKKPLVADQVAVNYLKAD-IPP--RQRAMLDFAL-K-----------VCKASHEVN-------EADFEAL-REH 147 (190)
T ss_dssp HHHHHHHTCTTHHHHHHHHGGGSS-CCH--HHHHHHHHHH-H-----------HHHHGGGCC-------HHHHHHH-HTT
T ss_pred HHHHHcccchhhHHHHHhcccccc-ccH--HHHHHHHHHH-H-----------HHHhccCCC-------HHHHHHH-HHc
Confidence 778889999988887765432221 121 2344555543 1 111121111 2234555 577
Q ss_pred CCCchhHHHhhhccccccccccccchHHHHHHH-HHhcCChHHHHHHHHhcc
Q 010686 348 GAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFL-RSIGMRNSDILKVLRSLT 398 (504)
Q Consensus 348 G~s~~~v~~ml~~~P~iL~~s~e~~L~~kv~fL-~~lG~s~~ev~~~v~r~P 398 (504)
||++.++..++... +. -.-++.+ ..+|+..++-.-.+-|.|
T Consensus 148 g~s~~eivel~~~v----a~------~~~~nr~~~~l~i~~d~e~~~~~~~~ 189 (190)
T d2prra1 148 GFTDEDAWDIAAIT----AF------FGLSNRMANTIGMRPNDEFFLMGRVP 189 (190)
T ss_dssp TCCHHHHHHHHHHH----HH------HHHHHHHHHHHTCCCCHHHHHTTSSC
T ss_pred CCCHHHHHHHHHHH----HH------HHHHHHHHHHhCCCCChHHHhcCCCC
Confidence 88888887776542 21 1223333 356776655444555665
No 15
>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.66 E-value=58 Score=22.61 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=21.9
Q ss_pred HHHHHHHhcCChHHHHHHHHhccchhccCcccchHHHHHHHHHHhC
Q 010686 376 RINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELH 421 (504)
Q Consensus 376 kv~fL~~lG~s~~ev~~~v~r~P~iL~~SlE~~L~pk~~fL~~~mg 421 (504)
.+.-|.+|||+.+...+.+... -+ ..+..-+++|...+.
T Consensus 12 ~l~~L~~MGF~~~~a~~AL~~t-----~n--~~~e~A~~Wl~~h~~ 50 (64)
T d1whca_ 12 ALESLIEMGFPRGRAEKALALT-----GN--QGIEAAMDWLMEHED 50 (64)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHH-----TS--CCHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHh-----CC--CCHHHHHHHHHHCCC
Confidence 4455666777777666555432 11 246666666666553
No 16
>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=20.38 E-value=48 Score=25.33 Aligned_cols=67 Identities=13% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHhCC------------CCHHHHHHHHHhcCCccccCcc-CHHHHHHHHHHCCCChhhHHHHHhhCCcccccCc
Q 010686 193 LPLLDYLSTFG------------LKESHFIQMYERHMPSLQINVC-SARERLEYLLSVGVKQRDVRRILLRQPQILEYTV 259 (504)
Q Consensus 193 ~~vl~fL~slG------------~s~~~I~~il~r~P~lL~~~~~-~l~~~l~fL~slGls~~~l~kil~~~P~lL~~s~ 259 (504)
...+++|...| ++.+++..++...+.--..+.. .....+..-....++.+++..++..+|.++.+.+
T Consensus 14 rka~~~L~~~~i~~~~idy~k~pls~~eL~~ll~~~g~~~l~~~r~~~~k~l~~~~~~~ls~~e~i~~i~~~P~LikRPI 93 (114)
T d1rw1a_ 14 KKARTWLDEHKVAYDFHDYKAVGIDREHLRRWCAEHGWQTVLNRAGTTFRKLDEAQKADLDEAKAIELMLAQPSMIKRPV 93 (114)
T ss_dssp HHHHHHHHHTTCCEEEEEHHHHCCCHHHHHHHHHHHCHHHHBCTTSHHHHTSCHHHHTTCCHHHHHHHHHHCGGGBCSCE
T ss_pred HHHHHHHHHcCCCeEEEEccccCCCHHHHHHHHHhcchHHHhhhhhHHHHHhhhhhhccccHHHHHHHHHhCcceEeCCE
No 17
>d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=20.35 E-value=34 Score=23.52 Aligned_cols=47 Identities=9% Similarity=0.050 Sum_probs=25.7
Q ss_pred HHhCCChhHHHHHHhhCccceeccccccchhhhhhhhhhcCCCchhHHH
Q 010686 308 EEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVK 356 (504)
Q Consensus 308 ~~lGv~~~~l~~vI~~~P~lL~~~~e~~l~~kv~fL~~~lG~s~~~v~~ 356 (504)
+..|++...+.+++...|.-..-+. ..+.+|.-..+++|+.+....+
T Consensus 8 ~~agvS~sTVSrvLn~~~~~~~vs~--~tr~rV~~~a~~lgY~pn~~Ar 54 (59)
T d1uxda_ 8 RLAGVSRTTASYVINGKAKQYRVSD--KTVEKVMAVVREHNYHPNAVAA 54 (59)
T ss_dssp HHHTSCTTHHHHHHHTCGGGTTCTT--TTHHHHHHHHHHHTCCCCSCCS
T ss_pred HHHCcCHHHHHHHHcCCCCcCcCCH--HHHHHHHHHHHHHCCCcCHHHH
Confidence 3667777777777776654221122 2334444444677776655433
Done!