BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010687
(504 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U0M|A Chain A, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
pdb|1U0M|B Chain B, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
Length = 382
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 70/326 (21%), Positives = 126/326 (38%), Gaps = 73/326 (22%)
Query: 173 EAEQVMFGALDNLFANTNVKPKDIGILV-VNCSLFNPTPSLSAMIVNKYKLRGNIRSFNL 231
EA+ + + + + DI +++ V+C+ F PSL+A ++N+ R +
Sbjct: 83 EAKSRVPAVIQRALDDAELLATDIDVIIYVSCTGFM-MPSLTAWLINEMGFDSTTRQIPI 141
Query: 232 GGMGCSAGVIAIDLAKDMLQVHRNTYAVVVSTENITQNWYFGN-KKSMLIPNCLFRVGGS 290
+GC+AG AI+ A D + A++V+ E + + + L+ N LF G +
Sbjct: 142 AQLGCAAGGAAINRAHDFCTAYPEANALIVACEFCSLCYQPTDLGVGSLLCNGLFGDGIA 201
Query: 291 AVLLSNKAKDRRRAKYKLVHVVRTHKGADDNAFKCVYQEQDNAGKTGVSLSKDLMAIAGM 350
A ++ + G TGV L ++
Sbjct: 202 AAVVRGR------------------------------------GGTGVRLERN------- 218
Query: 351 ALKANITTLGPLVLPISEQLLFFAT------LVAKKFSNAKVKPYIPDFK-LAFDH---- 399
G ++P +E + + + K A ++P P K LA +H
Sbjct: 219 ---------GSYLIPKTEDWIMYDVKATGFHFLLDKRVPATMEPLAPALKELAGEHGWDA 269
Query: 400 -----FCIHAGGRAVIDELEKNLQLLPEHVEASRMTLHRFGNTSSSSIWYELAYTEAKGR 454
+ +HAGG ++D+L L++ P SR TL +GN +S+ + L +G
Sbjct: 270 SDLDFYIVHAGGPRILDDLSTFLEVDPHAFRFSRATLTEYGNIASAVVLDALRRLFDEGG 329
Query: 455 MRRGNRVWQIAFGSGFKCNSAV--WQ 478
+ G R FG G ++ WQ
Sbjct: 330 VEEGARGLLAGFGPGITAEMSLGCWQ 355
>pdb|3ALE|A Chain A, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|B Chain B, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|C Chain C, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|D Chain D, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
Length = 416
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 68/297 (22%), Positives = 117/297 (39%), Gaps = 36/297 (12%)
Query: 195 DIGILVVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAIDLAKDMLQVHR 254
DI LVV + P + +V LR ++R L GC AG A+ LAKD+ + R
Sbjct: 147 DITHLVVTTNSGAHVPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDLAENSR 206
Query: 255 NTYAVVVSTENITQNWYFGNKKS---MLIPNCLFRVGGSAVLLSNKAKDRRRAKYKLVHV 311
+VV+ E +T ++ G + L+ LF G +AV++ A D R +++V
Sbjct: 207 GARVLVVAAE-LTLMYFTGPDEGCFRTLLVQGLFGDGAAAVIVGADADDVERPLFEIVSA 265
Query: 312 VRTHKGADDNAFKCVYQEQDNAGKTGVSLSKDLMAIAGMALKANITTLGPLVLPISEQLL 371
+T D+A + E+ G G + L+ E+ L
Sbjct: 266 AQTIIPESDHALNMRFTERRLDGVLGRQVPG-------------------LIGDNVERCL 306
Query: 372 FFATLVAKKFSNAKVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPEHVEASRMTL 431
F + F + +H G ++D+++ L L P + ASR L
Sbjct: 307 L------DMFGPLLGGDGGGGWNDLF--WAVHPGSSTIMDQVDAALGLEPGKLAASRRVL 358
Query: 432 HRFGNTSSSSIWYELAYTEAKGRMRRGNRVW-----QIAFGSGFKCNSAVWQALRNV 483
+GN S +++ + L + + W +AFG G ++ + A +V
Sbjct: 359 SDYGNMSGATVIFALDELRRQRKEAAAAGEWPELGVMMAFGPGMTVDAMLLHATSHV 415
>pdb|3OIT|A Chain A, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
pdb|3OIT|B Chain B, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
Length = 387
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/293 (22%), Positives = 115/293 (39%), Gaps = 36/293 (12%)
Query: 195 DIGILVVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAIDLAKDMLQVHR 254
DI LVV + P + +V LR ++R L GC AG A+ LAKD+ + R
Sbjct: 117 DITHLVVTTNSGAHVPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDLAENSR 176
Query: 255 NTYAVVVSTENITQNWYFGNKKS---MLIPNCLFRVGGSAVLLSNKAKDRRRAKYKLVHV 311
+VV+ E +T ++ G + L+ LF G +AV++ A D R +++V
Sbjct: 177 GARVLVVAAE-LTLMYFTGPDEGCFRTLLVQGLFGDGAAAVIVGADADDVERPLFEIVSA 235
Query: 312 VRTHKGADDNAFKCVYQEQDNAGKTGVSLSKDLMAIAGMALKANITTLGPLVLPISEQLL 371
+T D+A + E+ G G + L+ E+ L
Sbjct: 236 AQTIIPESDHALNMRFTERRLDGVLGRQVPG-------------------LIGDNVERCL 276
Query: 372 FFATLVAKKFSNAKVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPEHVEASRMTL 431
F + F + +H G ++D+++ L L P + ASR L
Sbjct: 277 L------DMFGPLLGGDGGGGWNDLF--WAVHPGSSTIMDQVDAALGLEPGKLAASRRVL 328
Query: 432 HRFGNTSSSSIWYELAYTEAKGRMRRGNRVW-----QIAFGSGFKCNSAVWQA 479
+GN S +++ + L + + W +AFG G ++ + A
Sbjct: 329 SDYGNMSGATVIFALDELRRQRKEAAAAGEWPELGVMMAFGPGMTVDAMLLHA 381
>pdb|1Z1E|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea
pdb|1Z1F|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea (Resveratrol-Bound Form)
Length = 390
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/271 (21%), Positives = 118/271 (43%), Gaps = 45/271 (16%)
Query: 210 PSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAIDLAKDMLQVHRNTYAVVVSTENITQN 269
P + ++ L +++ + + GC AG + LAKD+ + +++ ++V +EN +
Sbjct: 139 PGVDYELIVLLGLDPSVKRYMMYHQGCFAGGTVLRLAKDLAENNKDARVLIVCSENTSVT 198
Query: 270 WYFGNKKSM--LIPNCLFRVGGSAVLLSNKAKDRRRAKYKLVHVVRTHKGADDNAFKCVY 327
+ ++ M L+ LF G +A+++ + + L +V T + N+
Sbjct: 199 FRGPSETDMDSLVGQALFADGAAAIIIGSDPVPE--VENPLFEIVSTDQQLVPNSHG--- 253
Query: 328 QEQDNAGKTGVSLSKDLMAIAGMALKANITTLGPLVLPISEQLLFFATLVAKKFSNAKVK 387
AI G+ + +T +P ++++ ++A K
Sbjct: 254 ------------------AIGGLLREVGLTFYLNKSVP---------DIISQNINDALSK 286
Query: 388 PYIP----DFKLAFDHFCIHAGGRAVIDELEKNLQLLPEHVEASRMTLHRFGNTSSSSIW 443
+ P D+ F + H GGRA++D++E+ + L PE ++A+R L +GN SS+ ++
Sbjct: 287 AFDPLGISDYNSIF--WIAHPGGRAILDQVEEKVNLKPEKMKATRDVLSNYGNMSSACVF 344
Query: 444 YELAYTEAK----GRMRRGNRV-WQIAFGSG 469
+ + K G G + W + FG G
Sbjct: 345 FIMDLMRKKSLEAGLKTTGEGLDWGVLFGFG 375
>pdb|1U0V|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0V|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0W|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
Length = 393
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 122/292 (41%), Gaps = 50/292 (17%)
Query: 192 KPKDIGILVVNCSLFNPT-PSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAIDLAKDML 250
+PK ++ CS P P + LR ++ + GC AG + LAKD+
Sbjct: 123 QPKSKITHLIVCSTTTPDLPGADYQLTKLLGLRPYVKRVGVFQHGCFAGGTVLRLAKDLA 182
Query: 251 QVHRNTYAVVVSTENITQNWYFGNKKS---MLIPNCLFRVGGSAVLL-SNKAKDRRRAKY 306
+ ++ +VV +E +T + G + L+ LF G +A+++ S+ + + +
Sbjct: 183 ENNKGARVLVVCSE-VTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIF 241
Query: 307 KLVHVVRTHKGADDNAFKCVYQEQDNAGKTGVSLSKDLMAIAGMALKANITTLGPLVLPI 366
++V +T D+ G AI G +A +T +P
Sbjct: 242 EMVWTAQTIA-------------PDSEG-----------AIDGHLREAGLTFHLKGAVP- 276
Query: 367 SEQLLFFATLVAKKFSNAKVKPYIP----DFKLAFDHFCIHAGGRAVIDELEKNLQLLPE 422
+V+K + A V+ + P D+ F + H GG A++D++E+ L L PE
Sbjct: 277 --------DIVSKNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPE 326
Query: 423 HVEASRMTLHRFGNTSSSSIWYELAYTEAK----GRMRRGNRV-WQIAFGSG 469
+ A+R L +GN SS+ + + L K G G + W + FG G
Sbjct: 327 KMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFG 378
>pdb|1CGZ|A Chain A, Chalcone Synthase From Alfalfa Complexed With Resveratrol
pdb|1CGK|A Chain A, Chalcone Synthase From Alfalfa Complexed With Naringenin
Length = 389
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 112/261 (42%), Gaps = 49/261 (18%)
Query: 222 LRGNIRSFNLGGMGCSAGVIAIDLAKDMLQVHRNTYAVVVSTENITQNWYFGNKKS---M 278
LR ++ + + GC AG + LAKD+ + ++ +VV +E +T + G +
Sbjct: 150 LRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSE-VTAVTFRGPSDTHLDS 208
Query: 279 LIPNCLFRVGGSAVLL-SNKAKDRRRAKYKLVHVVRTHKGADDNAFKCVYQEQDNAGKTG 337
L+ LF G +A+++ S+ + + +++V +T + A +E AG T
Sbjct: 209 LVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLRE---AGLT- 264
Query: 338 VSLSKDLMAIAGMALKANITTLGPLVLPISEQLLFFATLVAKKFSNAKVKPYIP----DF 393
L KD+ I V+K + A V+ + P D+
Sbjct: 265 FHLLKDVPGI-----------------------------VSKNITKALVEAFEPLGISDY 295
Query: 394 KLAFDHFCIHAGGRAVIDELEKNLQLLPEHVEASRMTLHRFGNTSSSSIWYELAYTEAK- 452
F + H GG A++D++E+ L L PE + A+R L +GN SS+ + + L K
Sbjct: 296 NSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKS 353
Query: 453 ---GRMRRGNRV-WQIAFGSG 469
G G + W + FG G
Sbjct: 354 TQNGLKTTGEGLEWGVLFGFG 374
>pdb|1QLV|A Chain A, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1QLV|B Chain B, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1EE0|A Chain A, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
pdb|1EE0|B Chain B, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
Length = 402
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 120/287 (41%), Gaps = 51/287 (17%)
Query: 210 PSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAIDLAKDMLQVHRNTYAVVVSTENITQN 269
P +V L +++ + L G +AG + LAKD+ + ++ + ++V +E IT
Sbjct: 143 PGADYQLVKLLGLSPSVKRYMLYQQGXAAGGTVLRLAKDLAENNKGSRVLIVCSE-ITAI 201
Query: 270 WYFG---NKKSMLIPNCLFRVGGSAVLL-SNKAKDRRRAKYKLVHVVRTHKGADDNAFKC 325
+ G N L+ LF G +A+++ S R +++V +T + A K
Sbjct: 202 LFHGPNENHLDSLVAQALFGDGAAALIVGSGPHLAVERPIFEIVSTDQTILPDTEKAMKL 261
Query: 326 VYQEQDNAGKTGVSLSKDLMAIAGMALKANITTLGPLVLPISEQLLFFATLVAKKFSNAK 385
+E G L +D+ PL +VAK NA
Sbjct: 262 HLRE----GGLTFQLHRDV----------------PL-------------MVAKNIENAA 288
Query: 386 VKPYIP----DFKLAFDHFCIHAGGRAVIDELEKNLQLLPEHVEASRMTLHRFGNTSSSS 441
K P D+ F + +H GGRA++D++E+ L L + + ASR L +GN S+
Sbjct: 289 EKALSPLGITDWNSVF--WMVHPGGRAILDQVERKLNLKEDKLRASRHVLSEYGNLISAC 346
Query: 442 IWYEL----AYTEAKGRMRRGNRV---WQIAFGSGFKCNSAVWQALR 481
+ + + + A+G+ G + FG G + V +++R
Sbjct: 347 VLFIIDEVRKRSMAEGKSTTGEGLDCGVLFGFGPGMTVETVVLRSVR 393
>pdb|1I86|A Chain A, Chalcone Synthase, G256a Mutant
Length = 389
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 111/261 (42%), Gaps = 49/261 (18%)
Query: 222 LRGNIRSFNLGGMGCSAGVIAIDLAKDMLQVHRNTYAVVVSTENITQNWYFGNKKS---M 278
LR ++ + + G AG + LAKD+ + ++ +VV +E +T + G +
Sbjct: 150 LRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVCSE-VTAVTFRGPSDTHLDS 208
Query: 279 LIPNCLFRVGGSAVLL-SNKAKDRRRAKYKLVHVVRTHKGADDNAFKCVYQEQDNAGKTG 337
L+ LF G +A+++ S+ + + +++V +T + A +E AG T
Sbjct: 209 LVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDAHLRE---AGLT- 264
Query: 338 VSLSKDLMAIAGMALKANITTLGPLVLPISEQLLFFATLVAKKFSNAKVKPYIP----DF 393
L KD+ I V+K + A V+ + P D+
Sbjct: 265 FHLLKDVPGI-----------------------------VSKNITKALVEAFEPLGISDY 295
Query: 394 KLAFDHFCIHAGGRAVIDELEKNLQLLPEHVEASRMTLHRFGNTSSSSIWYELAYTEAK- 452
F + H GG A++D++E+ L L PE + A+R L +GN SS+ + + L K
Sbjct: 296 NSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKS 353
Query: 453 ---GRMRRGNRV-WQIAFGSG 469
G G + W + FG G
Sbjct: 354 TQNGLKTTGEGLEWGVLFGFG 374
>pdb|1I88|A Chain A, Chalcone Synthase (G256v)
pdb|1I88|B Chain B, Chalcone Synthase (G256v)
Length = 389
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 111/261 (42%), Gaps = 49/261 (18%)
Query: 222 LRGNIRSFNLGGMGCSAGVIAIDLAKDMLQVHRNTYAVVVSTENITQNWYFGNKKS---M 278
LR ++ + + G AG + LAKD+ + ++ +VV +E +T + G +
Sbjct: 150 LRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVCSE-VTAVTFRGPSDTHLDS 208
Query: 279 LIPNCLFRVGGSAVLL-SNKAKDRRRAKYKLVHVVRTHKGADDNAFKCVYQEQDNAGKTG 337
L+ LF G +A+++ S+ + + +++V +T + A +E AG T
Sbjct: 209 LVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDVHLRE---AGLT- 264
Query: 338 VSLSKDLMAIAGMALKANITTLGPLVLPISEQLLFFATLVAKKFSNAKVKPYIP----DF 393
L KD+ I V+K + A V+ + P D+
Sbjct: 265 FHLLKDVPGI-----------------------------VSKNITKALVEAFEPLGISDY 295
Query: 394 KLAFDHFCIHAGGRAVIDELEKNLQLLPEHVEASRMTLHRFGNTSSSSIWYELAYTEAK- 452
F + H GG A++D++E+ L L PE + A+R L +GN SS+ + + L K
Sbjct: 296 NSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKS 353
Query: 453 ---GRMRRGNRV-WQIAFGSG 469
G G + W + FG G
Sbjct: 354 TQNGLKTTGEGLEWGVLFGFG 374
>pdb|1CML|A Chain A, Chalcone Synthase From Alfalfa Complexed With Malonyl-Coa
pdb|1D6F|A Chain A, Chalcone Synthase C164a Mutant
Length = 389
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 111/261 (42%), Gaps = 49/261 (18%)
Query: 222 LRGNIRSFNLGGMGCSAGVIAIDLAKDMLQVHRNTYAVVVSTENITQNWYFGNKKS---M 278
LR ++ + + G AG + LAKD+ + ++ +VV +E +T + G +
Sbjct: 150 LRPYVKRYMMYQQGAFAGGTVLRLAKDLAENNKGARVLVVCSE-VTAVTFRGPSDTHLDS 208
Query: 279 LIPNCLFRVGGSAVLL-SNKAKDRRRAKYKLVHVVRTHKGADDNAFKCVYQEQDNAGKTG 337
L+ LF G +A+++ S+ + + +++V +T + A +E AG T
Sbjct: 209 LVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLRE---AGLT- 264
Query: 338 VSLSKDLMAIAGMALKANITTLGPLVLPISEQLLFFATLVAKKFSNAKVKPYIP----DF 393
L KD+ I V+K + A V+ + P D+
Sbjct: 265 FHLLKDVPGI-----------------------------VSKNITKALVEAFEPLGISDY 295
Query: 394 KLAFDHFCIHAGGRAVIDELEKNLQLLPEHVEASRMTLHRFGNTSSSSIWYELAYTEAK- 452
F + H GG A++D++E+ L L PE + A+R L +GN SS+ + + L K
Sbjct: 296 NSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKS 353
Query: 453 ---GRMRRGNRV-WQIAFGSG 469
G G + W + FG G
Sbjct: 354 TQNGLKTTGEGLEWGVLFGFG 374
>pdb|1I89|A Chain A, Chalcone Synthase (G256l)
pdb|1I89|B Chain B, Chalcone Synthase (G256l)
Length = 389
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 111/261 (42%), Gaps = 49/261 (18%)
Query: 222 LRGNIRSFNLGGMGCSAGVIAIDLAKDMLQVHRNTYAVVVSTENITQNWYFGNKKS---M 278
LR ++ + + G AG + LAKD+ + ++ +VV +E +T + G +
Sbjct: 150 LRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVCSE-VTAVTFRGPSDTHLDS 208
Query: 279 LIPNCLFRVGGSAVLL-SNKAKDRRRAKYKLVHVVRTHKGADDNAFKCVYQEQDNAGKTG 337
L+ LF G +A+++ S+ + + +++V +T + A +E AG T
Sbjct: 209 LVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDLHLRE---AGLT- 264
Query: 338 VSLSKDLMAIAGMALKANITTLGPLVLPISEQLLFFATLVAKKFSNAKVKPYIP----DF 393
L KD+ I V+K + A V+ + P D+
Sbjct: 265 FHLLKDVPGI-----------------------------VSKNITKALVEAFEPLGISDY 295
Query: 394 KLAFDHFCIHAGGRAVIDELEKNLQLLPEHVEASRMTLHRFGNTSSSSIWYELAYTEAK- 452
F + H GG A++D++E+ L L PE + A+R L +GN SS+ + + L K
Sbjct: 296 NSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKS 353
Query: 453 ---GRMRRGNRV-WQIAFGSG 469
G G + W + FG G
Sbjct: 354 TQNGLKTTGEGLEWGVLFGFG 374
>pdb|1CHW|A Chain A, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
pdb|1CHW|B Chain B, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
Length = 389
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 111/261 (42%), Gaps = 49/261 (18%)
Query: 222 LRGNIRSFNLGGMGCSAGVIAIDLAKDMLQVHRNTYAVVVSTENITQNWYFGNKKS---M 278
LR ++ + + G AG + LAKD+ + ++ +VV +E +T + G +
Sbjct: 150 LRPYVKRYMMYQQGSFAGGTVLRLAKDLAENNKGARVLVVCSE-VTAVTFRGPSDTHLDS 208
Query: 279 LIPNCLFRVGGSAVLL-SNKAKDRRRAKYKLVHVVRTHKGADDNAFKCVYQEQDNAGKTG 337
L+ LF G +A+++ S+ + + +++V +T + A +E AG T
Sbjct: 209 LVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLRE---AGLT- 264
Query: 338 VSLSKDLMAIAGMALKANITTLGPLVLPISEQLLFFATLVAKKFSNAKVKPYIP----DF 393
L KD+ I V+K + A V+ + P D+
Sbjct: 265 FHLLKDVPGI-----------------------------VSKNITKALVEAFEPLGISDY 295
Query: 394 KLAFDHFCIHAGGRAVIDELEKNLQLLPEHVEASRMTLHRFGNTSSSSIWYELAYTEAK- 452
F + H GG A++D++E+ L L PE + A+R L +GN SS+ + + L K
Sbjct: 296 NSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKS 353
Query: 453 ---GRMRRGNRV-WQIAFGSG 469
G G + W + FG G
Sbjct: 354 TQNGLKTTGEGLEWGVLFGFG 374
>pdb|1I8B|A Chain A, Chalcone Synthase (g256f)
pdb|1I8B|B Chain B, Chalcone Synthase (g256f)
Length = 389
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 111/261 (42%), Gaps = 49/261 (18%)
Query: 222 LRGNIRSFNLGGMGCSAGVIAIDLAKDMLQVHRNTYAVVVSTENITQNWYFGNKKS---M 278
LR ++ + + G AG + LAKD+ + ++ +VV +E +T + G +
Sbjct: 150 LRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVCSE-VTAVTFRGPSDTHLDS 208
Query: 279 LIPNCLFRVGGSAVLL-SNKAKDRRRAKYKLVHVVRTHKGADDNAFKCVYQEQDNAGKTG 337
L+ LF G +A+++ S+ + + +++V +T + A +E AG T
Sbjct: 209 LVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDFHLRE---AGLT- 264
Query: 338 VSLSKDLMAIAGMALKANITTLGPLVLPISEQLLFFATLVAKKFSNAKVKPYIP----DF 393
L KD+ I V+K + A V+ + P D+
Sbjct: 265 FHLLKDVPGI-----------------------------VSKNITKALVEAFEPLGISDY 295
Query: 394 KLAFDHFCIHAGGRAVIDELEKNLQLLPEHVEASRMTLHRFGNTSSSSIWYELAYTEAK- 452
F + H GG A++D++E+ L L PE + A+R L +GN SS+ + + L K
Sbjct: 296 NSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKS 353
Query: 453 ---GRMRRGNRV-WQIAFGSG 469
G G + W + FG G
Sbjct: 354 TQNGLKTTGEGLEWGVLFGFG 374
>pdb|1BQ6|A Chain A, Chalcone Synthase From Alfalfa With Coenzyme A
Length = 388
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 111/261 (42%), Gaps = 49/261 (18%)
Query: 222 LRGNIRSFNLGGMGCSAGVIAIDLAKDMLQVHRNTYAVVVSTENITQNWYFGNKKS---M 278
LR ++ + + G AG + LAKD+ + ++ +VV +E +T + G +
Sbjct: 149 LRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVCSE-VTAVTFRGPSDTHLDS 207
Query: 279 LIPNCLFRVGGSAVLL-SNKAKDRRRAKYKLVHVVRTHKGADDNAFKCVYQEQDNAGKTG 337
L+ LF G +A+++ S+ + + +++V +T + A +E AG T
Sbjct: 208 LVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLRE---AGLT- 263
Query: 338 VSLSKDLMAIAGMALKANITTLGPLVLPISEQLLFFATLVAKKFSNAKVKPYIP----DF 393
L KD+ I V+K + A V+ + P D+
Sbjct: 264 FHLLKDVPGI-----------------------------VSKNITKALVEAFEPLGISDY 294
Query: 394 KLAFDHFCIHAGGRAVIDELEKNLQLLPEHVEASRMTLHRFGNTSSSSIWYELAYTEAK- 452
F + H GG A++D++E+ L L PE + A+R L +GN SS+ + + L K
Sbjct: 295 NSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKS 352
Query: 453 ---GRMRRGNRV-WQIAFGSG 469
G G + W + FG G
Sbjct: 353 TQNGLKTTGEGLEWGVLFGFG 373
>pdb|1BI5|A Chain A, Chalcone Synthase From Alfalfa
Length = 389
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 111/261 (42%), Gaps = 49/261 (18%)
Query: 222 LRGNIRSFNLGGMGCSAGVIAIDLAKDMLQVHRNTYAVVVSTENITQNWYFGNKKS---M 278
LR ++ + + G AG + LAKD+ + ++ +VV +E +T + G +
Sbjct: 150 LRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVCSE-VTAVTFRGPSDTHLDS 208
Query: 279 LIPNCLFRVGGSAVLL-SNKAKDRRRAKYKLVHVVRTHKGADDNAFKCVYQEQDNAGKTG 337
L+ LF G +A+++ S+ + + +++V +T + A +E AG T
Sbjct: 209 LVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLRE---AGLT- 264
Query: 338 VSLSKDLMAIAGMALKANITTLGPLVLPISEQLLFFATLVAKKFSNAKVKPYIP----DF 393
L KD+ I V+K + A V+ + P D+
Sbjct: 265 FHLLKDVPGI-----------------------------VSKNITKALVEAFEPLGISDY 295
Query: 394 KLAFDHFCIHAGGRAVIDELEKNLQLLPEHVEASRMTLHRFGNTSSSSIWYELAYTEAK- 452
F + H GG A++D++E+ L L PE + A+R L +GN SS+ + + L K
Sbjct: 296 NSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKS 353
Query: 453 ---GRMRRGNRV-WQIAFGSG 469
G G + W + FG G
Sbjct: 354 TQNGLKTTGEGLEWGVLFGFG 374
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 109/271 (40%), Gaps = 45/271 (16%)
Query: 210 PSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAIDLAKDMLQVHRNTYAVVVSTENITQN 269
P + N L ++R L GC AG + AKD+ + + +VV +E IT
Sbjct: 725 PGADYKLANLLGLEPSVRRVMLYHQGCYAGGTVLRTAKDLAENNAGARVLVVCSE-ITVV 783
Query: 270 WYFGNKKSML---IPNCLFRVGGSAVLL-SNKAKDRRRAKYKLVHVVRTHKGADDNAFKC 325
+ G + L + LF G +AV++ S+ R ++LV +T A
Sbjct: 784 TFRGPSEDALDSLVGQALFGDGSAAVIVGSDPDISIERPLFQLVSAAQTFIPNSAGAIA- 842
Query: 326 VYQEQDNAGKTGVSLSKDLMAIAGMALKANITTLGPLVLPISEQLLFFATLVAKKFSNAK 385
N + G++ L N+ TL ISE V K + A
Sbjct: 843 -----GNLREVGLTFH----------LWPNVPTL------ISEN-------VEKCLTQAF 874
Query: 386 VKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPEHVEASRMTLHRFGNTSSSSIWYE 445
I D+ F + H GG A++D +E L L + +EA+R L +GN SS+ + +
Sbjct: 875 DPLGISDWNSLF--WIAHPGGPAILDAVEAKLNLDKKKLEATRHVLSEYGNMSSACVLFI 932
Query: 446 LAYTEAKGRMRRGNRV-------WQIAFGSG 469
L E + + +G R W + FG G
Sbjct: 933 L--DEMRKKSLKGERATTGEGLDWGVLFGFG 961
>pdb|1XES|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XET|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
Length = 413
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 104/254 (40%), Gaps = 35/254 (13%)
Query: 200 VVNCSLFNPT-PSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAIDLAKDMLQVHRNTYA 258
++ CS P P + L +++ + GC AG + +AKD+ + +R
Sbjct: 150 LIFCSTTTPDLPGADFEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRMAKDLAENNRGARV 209
Query: 259 VVVSTENITQNWYFGNKKSM--LIPNCLFRVGGSAVLL-SNKAKDRRRAKYKLVHVVRTH 315
+V+ +E + ++ + L+ LF G SA+++ ++ +A +++V +T
Sbjct: 210 LVICSETTAVTFRGPSETHLDSLVGQALFGDGASALIVGADPIPQVEKACFEIVWTAQTV 269
Query: 316 KGADDNAFKCVYQEQDNAGKTGVSLSKDLMAIAGMALKANITTLGPLVLPISEQLLFFAT 375
+ A +E V L+ L + ANI
Sbjct: 270 VPNSEGAIGGKVRE--------VGLTFQLKGAVPDLISANIE-----------------N 304
Query: 376 LVAKKFSNAKVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPEHVEASRMTLHRFG 435
+ + FS K I D+ F + +H GGRA++D +E L L P + +R + +G
Sbjct: 305 CMVEAFSQFK----ISDWNKLF--WVVHPGGRAILDRVEAKLNLDPTKLIPTRHVMSEYG 358
Query: 436 NTSSSSIWYELAYT 449
N SS+ + + L T
Sbjct: 359 NMSSACVHFILDQT 372
>pdb|1U0U|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|E Chain E, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|F Chain F, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
Length = 397
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 104/254 (40%), Gaps = 35/254 (13%)
Query: 200 VVNCSLFNPT-PSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAIDLAKDMLQVHRNTYA 258
++ CS P P + L +++ + GC AG + +AKD+ + +R
Sbjct: 134 LIFCSTTTPDLPGADFEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRMAKDLAENNRGARV 193
Query: 259 VVVSTENITQNWYFGNKKSM--LIPNCLFRVGGSAVLL-SNKAKDRRRAKYKLVHVVRTH 315
+V+ +E + ++ + L+ LF G SA+++ ++ +A +++V +T
Sbjct: 194 LVICSETTAVTFRGPSETHLDSLVGQALFGDGASALIVGADPIPQVEKACFEIVWTAQTV 253
Query: 316 KGADDNAFKCVYQEQDNAGKTGVSLSKDLMAIAGMALKANITTLGPLVLPISEQLLFFAT 375
+ A +E V L+ L + ANI
Sbjct: 254 VPNSEGAIGGKVRE--------VGLTFQLKGAVPDLISANIE-----------------N 288
Query: 376 LVAKKFSNAKVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPEHVEASRMTLHRFG 435
+ + FS K I D+ F + +H GGRA++D +E L L P + +R + +G
Sbjct: 289 CMVEAFSQFK----ISDWNKLF--WVVHPGGRAILDRVEAKLNLDPTKLIPTRHVMSEYG 342
Query: 436 NTSSSSIWYELAYT 449
N SS+ + + L T
Sbjct: 343 NMSSACVHFILDQT 356
>pdb|3A5S|A Chain A, Benzalacetone Synthase (I207lL208F)
pdb|3A5S|B Chain B, Benzalacetone Synthase (I207lL208F)
Length = 387
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/288 (22%), Positives = 115/288 (39%), Gaps = 42/288 (14%)
Query: 192 KPKD-IGILVVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAIDLAKDML 250
+PK I L+V C P + L +++ F +GC AG + LAKD+
Sbjct: 115 QPKSKITHLIVCCLAGVDMPGADYQLTKLLDLDPSVKRFMFYHLGCYAGGTVLRLAKDIA 174
Query: 251 QVHRNTYAVVVSTENITQNWYFGNKKSML---IPNCLFRVGGSAVLL-SNKAKDRRRAKY 306
+ ++ ++V +E +T + G ++ L I LF G +AV++ ++ R +
Sbjct: 175 ENNKGARVLIVCSE-MTTTCFRGPSETHLDSMIGQALFGDGAAAVIVGADPDLTVERPIF 233
Query: 307 KLVHVVRTHKGADDNAFKCVYQEQDNAGKTGVSLSKDLMAIAGMALKANITTLGPLVLPI 366
+LV +T A + E LS L + NI T
Sbjct: 234 ELVSTAQTIVPESHGAIEGHLLES--------GLSFHLYKTVPTLISNNIKTC------- 278
Query: 367 SEQLLFFATLVAKKFSNAKVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPEHVEA 426
S+A I D+ F + H GG A++D++ + L E ++
Sbjct: 279 --------------LSDAFTPLNISDWNSLF--WIAHPGGPAILDQVTAKVGLEKEKLKV 322
Query: 427 SRMTLHRFGNTSSSSIWYELAYTEAK----GRMRRGNRV-WQIAFGSG 469
+R L +GN SS+++++ + K G+ G + W + FG G
Sbjct: 323 TRQVLKDYGNMSSATVFFIMDEMRKKSLENGQATTGEGLEWGVLFGFG 370
>pdb|1D6I|A Chain A, Chalcone Synthase (H303q Mutant)
pdb|1D6I|B Chain B, Chalcone Synthase (H303q Mutant)
Length = 388
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 110/261 (42%), Gaps = 49/261 (18%)
Query: 222 LRGNIRSFNLGGMGCSAGVIAIDLAKDMLQVHRNTYAVVVSTENITQNWYFGNKKS---M 278
LR ++ + + G AG + LAKD+ + ++ +VV +E +T + G +
Sbjct: 149 LRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVCSE-VTAVTFRGPSDTHLDS 207
Query: 279 LIPNCLFRVGGSAVLL-SNKAKDRRRAKYKLVHVVRTHKGADDNAFKCVYQEQDNAGKTG 337
L+ LF G +A+++ S+ + + +++V +T + A +E AG T
Sbjct: 208 LVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLRE---AGLT- 263
Query: 338 VSLSKDLMAIAGMALKANITTLGPLVLPISEQLLFFATLVAKKFSNAKVKPYIP----DF 393
L KD+ I V+K + A V+ + P D+
Sbjct: 264 FHLLKDVPGI-----------------------------VSKNITKALVEAFEPLGISDY 294
Query: 394 KLAFDHFCIHAGGRAVIDELEKNLQLLPEHVEASRMTLHRFGNTSSSSIWYELAYTEAK- 452
F + GG A++D++E+ L L PE + A+R L +GN SS+ + + L K
Sbjct: 295 NSIF--WIAQPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKS 352
Query: 453 ---GRMRRGNRV-WQIAFGSG 469
G G + W + FG G
Sbjct: 353 TQNGLKTTGEGLEWGVLFGFG 373
>pdb|1D6H|A Chain A, Chalone Synthase (N336a Mutant Complexed With Coa)
Length = 387
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 110/261 (42%), Gaps = 49/261 (18%)
Query: 222 LRGNIRSFNLGGMGCSAGVIAIDLAKDMLQVHRNTYAVVVSTENITQNWYFGNKKS---M 278
LR ++ + + G AG + LAKD+ + ++ +VV +E +T + G +
Sbjct: 148 LRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVCSE-VTAVTFRGPSDTHLDS 206
Query: 279 LIPNCLFRVGGSAVLL-SNKAKDRRRAKYKLVHVVRTHKGADDNAFKCVYQEQDNAGKTG 337
L+ LF G +A+++ S+ + + +++V +T + A +E AG T
Sbjct: 207 LVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLRE---AGLT- 262
Query: 338 VSLSKDLMAIAGMALKANITTLGPLVLPISEQLLFFATLVAKKFSNAKVKPYIP----DF 393
L KD+ I V+K + A V+ + P D+
Sbjct: 263 FHLLKDVPGI-----------------------------VSKNITKALVEAFEPLGISDY 293
Query: 394 KLAFDHFCIHAGGRAVIDELEKNLQLLPEHVEASRMTLHRFGNTSSSSIWYELAYTEAK- 452
F + H GG A++D++E+ L L PE + A+R L +G SS+ + + L K
Sbjct: 294 NSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGAMSSACVLFILDEMRKKS 351
Query: 453 ---GRMRRGNRV-WQIAFGSG 469
G G + W + FG G
Sbjct: 352 TQNGLKTTGEGLEWGVLFGFG 372
>pdb|1TEE|A Chain A, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|B Chain B, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|C Chain C, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|D Chain D, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
Length = 393
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 66/293 (22%), Positives = 120/293 (40%), Gaps = 34/293 (11%)
Query: 192 KPKDIGILVVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAIDLAKDMLQ 251
+ +IG+LV+ S P + IV + L +I + MGC+A + A+ A + ++
Sbjct: 131 RAAEIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNYVR 190
Query: 252 VHRNTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGGSAVLLSNKAKDRRRAKYKLVHV 311
H A+VV E + N F + + ++ + LF G +A+++ + K+V V
Sbjct: 191 AHPAMKALVVCIELFSVNAVFADDINDVVIHSLFGDGCAALVIGASQVQEKLEPGKVV-V 249
Query: 312 VRTHKGADDNAFKCVYQEQDNAGKTGVSLSKDLMA--IAGMALKANITTLGPLVLPISEQ 369
+ DN + ++ G T LS++L +G+A P+ +
Sbjct: 250 RSSFSQLLDNTEDGIVLGVNHNGIT-CELSENLPGYIFSGVA-------------PVVTE 295
Query: 370 LLFFATLVAKKFSNAKVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPEHVEASRM 429
+L+ L I D D + IH GG +I++ ++L + E S
Sbjct: 296 MLWDNGL------------QISD----IDLWAIHPGGPKIIEQSVRSLGISAELAAQSWD 339
Query: 430 TLHRFGNTSSSSIWYELAYTEAKGRMRRG-NRVWQIAFGSGFKCNSAVWQALR 481
L RFGN S S+ + L + + + AFG G ++ +R
Sbjct: 340 VLARFGNMLSVSLIFVLETMVQQAESAKAISTGVAFAFGPGVTVEGMLFDIIR 392
>pdb|1JWX|A Chain A, Chalcone Synthase--F215s Mutant
Length = 389
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 110/261 (42%), Gaps = 49/261 (18%)
Query: 222 LRGNIRSFNLGGMGCSAGVIAIDLAKDMLQVHRNTYAVVVSTENITQNWYFGNKKS---M 278
LR ++ + + G AG + LAKD+ + ++ +VV +E +T + G +
Sbjct: 150 LRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVCSE-VTAVTFRGPSDTHLDS 208
Query: 279 LIPNCLFRVGGSAVLL-SNKAKDRRRAKYKLVHVVRTHKGADDNAFKCVYQEQDNAGKTG 337
L+ L G +A+++ S+ + + +++V +T + A +E AG T
Sbjct: 209 LVGQALSGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLRE---AGLT- 264
Query: 338 VSLSKDLMAIAGMALKANITTLGPLVLPISEQLLFFATLVAKKFSNAKVKPYIP----DF 393
L KD+ I V+K + A V+ + P D+
Sbjct: 265 FHLLKDVPGI-----------------------------VSKNITKALVEAFEPLGISDY 295
Query: 394 KLAFDHFCIHAGGRAVIDELEKNLQLLPEHVEASRMTLHRFGNTSSSSIWYELAYTEAK- 452
F + H GG A++D++E+ L L PE + A+R L +GN SS+ + + L K
Sbjct: 296 NSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKS 353
Query: 453 ---GRMRRGNRV-WQIAFGSG 469
G G + W + FG G
Sbjct: 354 TQNGLKTTGEGLEWGVLFGFG 374
>pdb|1TED|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|C Chain C, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|D Chain D, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
Length = 393
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 66/293 (22%), Positives = 120/293 (40%), Gaps = 34/293 (11%)
Query: 192 KPKDIGILVVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAIDLAKDMLQ 251
+ +IG+LV+ S P + IV + L +I + MGC+A + A+ A + ++
Sbjct: 131 RAAEIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNYVR 190
Query: 252 VHRNTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGGSAVLLSNKAKDRRRAKYKLVHV 311
H A+VV E + N F + + ++ + LF G +A+++ + K+V V
Sbjct: 191 AHPAMKALVVCIELCSVNAVFADDINDVVIHSLFGDGCAALVIGASQVQEKLEPGKVV-V 249
Query: 312 VRTHKGADDNAFKCVYQEQDNAGKTGVSLSKDLMA--IAGMALKANITTLGPLVLPISEQ 369
+ DN + ++ G T LS++L +G+A P+ +
Sbjct: 250 RSSFSQLLDNTEDGIVLGVNHNGIT-CELSENLPGYIFSGVA-------------PVVTE 295
Query: 370 LLFFATLVAKKFSNAKVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPEHVEASRM 429
+L+ L I D D + IH GG +I++ ++L + E S
Sbjct: 296 MLWDNGL------------QISD----IDLWAIHPGGPKIIEQSVRSLGISAELAAQSWD 339
Query: 430 TLHRFGNTSSSSIWYELAYTEAKGRMRRG-NRVWQIAFGSGFKCNSAVWQALR 481
L RFGN S S+ + L + + + AFG G ++ +R
Sbjct: 340 VLARFGNMLSVSLIFVLETMVQQAESAKAISTGVAFAFGPGVTVEGMLFDIIR 392
>pdb|2D3M|A Chain A, Pentaketide Chromone Synthase Complexed With Coenzyme A
pdb|2D3M|B Chain B, Pentaketide Chromone Synthase Complexed With Coenzyme A
Length = 406
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 403 HAGGRAVIDELEKNLQLLPEHVEASRMTLHRFGNTSSSSIWYELAY----TEAKGRMRRG 458
H GGRA++D++E L+L PE A+R L +GN S+S+ Y L + AKG G
Sbjct: 319 HPGGRAILDQVEAKLKLRPEKFRAARTVLWDYGNMVSASVGYILDEMRRKSAAKGLETYG 378
Query: 459 NRV-WQI--AFGSGFKCNSAVWQAL 480
+ W + FG G + + +L
Sbjct: 379 EGLEWGVLLGFGPGITVETILLHSL 403
>pdb|2D51|A Chain A, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D51|B Chain B, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D52|A Chain A, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
pdb|2D52|B Chain B, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
Length = 406
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 403 HAGGRAVIDELEKNLQLLPEHVEASRMTLHRFGNTSSSSIWYELAY----TEAKGRMRRG 458
H GGRA++D++E L+L PE A+R L +GN S+S+ Y L + AKG G
Sbjct: 319 HPGGRAILDQVEAKLKLRPEKFRAARTVLWDYGNMVSASVGYILDEMRRKSAAKGLETYG 378
Query: 459 NRV-WQI--AFGSGFKCNSAVWQAL 480
+ W + FG G + + +L
Sbjct: 379 EGLEWGVLLGFGPGITVETILLHSL 403
>pdb|1M1M|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl-Acyl Carrier Protein Synthase Iii
(Mtfabh)
pdb|1M1M|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl-Acyl Carrier Protein Synthase Iii
(Mtfabh)
Length = 355
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 82/376 (21%), Positives = 142/376 (37%), Gaps = 64/376 (17%)
Query: 98 RSIYLVDFSCYRPPSHLQVKFHQFMEHSRLTGDFDESSLEFQRKILERSGLGEETYVPDA 157
RS+ L+ YRP V + +H +SS E+ I R+G+ + D
Sbjct: 31 RSVGLLSVGAYRP--ERVVTNDEICQHI-------DSSDEW---IYTRTGIKTRRFAAD- 77
Query: 158 MHYLPPRPSMAAAREEAEQVMFGALDNLFANTNVKPKDI-GILVVNCSLFNPTPSLSAMI 216
E A + A +N + DI G++V + F TP + M+
Sbjct: 78 -------------DESAASMATEACRRALSNAGLSAADIDGVIVTTNTHFLQTPPAAPMV 124
Query: 217 VNKYKLRGNIRSFNLGGMGCSAGVIAIDLAKDMLQVHRNTYAVVVSTENITQNWYFGNKK 276
+G I F+L GC+ A+ A DM++ +VV TE ++ ++
Sbjct: 125 AASLGAKG-ILGFDLS-AGCAGFGYALGAAADMIRGGGAATMLVVGTEKLSPTIDMYDRG 182
Query: 277 SMLIPNC-LFRVGGSAVLLSNKAKDRRRAKYKLVHVVRTHKGADDNAFKCVYQEQDNAGK 335
NC +F G +AV++ + + T G+D + Q+ D
Sbjct: 183 -----NCFIFADGAAAVVVG---------ETPFQGIGPTVAGSDGEQADAIRQDIDW--- 225
Query: 336 TGVSLSKDLMAIAGMALKANITTLGPLVLPISEQLLFFATLVAKKFSNAKVKPYIPDFKL 395
++ +++ + + GP V + + + A V+P
Sbjct: 226 --ITFAQNPSG-----PRPFVRLEGPAVFRWAA--FKMGDVGRRAMDAAGVRPD------ 270
Query: 396 AFDHFCIHAGGRAVIDELEKNLQLLPEHVEASRMTLHRFGNTSSSSIWYELAYTEAKGRM 455
D F H + + L KNLQL P+ V A+ + GNTS++SI +A G
Sbjct: 271 QIDVFVPHQANSRINELLVKNLQLRPDAVVAN--DIEHTGNTSAASIPLAMAELLTTGAA 328
Query: 456 RRGNRVWQIAFGSGFK 471
+ G+ I +G+G
Sbjct: 329 KPGDLALLIGYGAGLS 344
>pdb|3A5Q|A Chain A, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5Q|B Chain B, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5R|A Chain A, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
pdb|3A5R|B Chain B, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
Length = 387
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/288 (21%), Positives = 114/288 (39%), Gaps = 42/288 (14%)
Query: 192 KPKD-IGILVVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAIDLAKDML 250
+PK I L+V C P + L +++ F +GC AG + LAKD+
Sbjct: 115 QPKSKITHLIVCCLAGVDMPGADYQLTKLLDLDPSVKRFMFYHLGCYAGGTVLRLAKDIA 174
Query: 251 QVHRNTYAVVVSTENITQNWYFGNKKSML---IPNCLFRVGGSAVLL-SNKAKDRRRAKY 306
+ ++ ++V +E +T + G ++ L I + G +AV++ ++ R +
Sbjct: 175 ENNKGARVLIVCSE-MTTTCFRGPSETHLDSMIGQAILGDGAAAVIVGADPDLTVERPIF 233
Query: 307 KLVHVVRTHKGADDNAFKCVYQEQDNAGKTGVSLSKDLMAIAGMALKANITTLGPLVLPI 366
+LV +T A + E LS L + NI T
Sbjct: 234 ELVSTAQTIVPESHGAIEGHLLES--------GLSFHLYKTVPTLISNNIKTC------- 278
Query: 367 SEQLLFFATLVAKKFSNAKVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPEHVEA 426
S+A I D+ F + H GG A++D++ + L E ++
Sbjct: 279 --------------LSDAFTPLNISDWNSLF--WIAHPGGPAILDQVTAKVGLEKEKLKV 322
Query: 427 SRMTLHRFGNTSSSSIWYELAYTEAK----GRMRRGNRV-WQIAFGSG 469
+R L +GN SS+++++ + K G+ G + W + FG G
Sbjct: 323 TRQVLKDYGNMSSATVFFIMDEMRKKSLENGQATTGEGLEWGVLFGFG 370
>pdb|1HZP|A Chain A, Crystal Structure Of The Myobacterium Tuberculosis
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii
pdb|1HZP|B Chain B, Crystal Structure Of The Myobacterium Tuberculosis
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii
pdb|2QX1|A Chain A, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-Ketoacyl-Acyl Carrier Protein Synthase
Iii (Fabh) And Decyl-Coa Disulfide
pdb|2QX1|B Chain B, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-Ketoacyl-Acyl Carrier Protein Synthase
Iii (Fabh) And Decyl-Coa Disulfide
pdb|2QNX|A Chain A, Crystal Structure Of The Complex Between The Mycobacterium
Beta- Ketoacyl-acyl Carrier Protein Synthase Iii (fabh)
And 11- [(decyloxycarbonyl)dithio]-undecanoic Acid
pdb|2QNX|B Chain B, Crystal Structure Of The Complex Between The Mycobacterium
Beta- Ketoacyl-acyl Carrier Protein Synthase Iii (fabh)
And 11- [(decyloxycarbonyl)dithio]-undecanoic Acid
pdb|2QNZ|A Chain A, Crystal Structure Of The Complex Between The Mycobacterium
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii (Fabh)
And Ss-(2-Hydroxyethyl)-O-Decyl Ester
Carbono(Dithioperoxoic) Acid
pdb|2QNZ|B Chain B, Crystal Structure Of The Complex Between The Mycobacterium
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii (Fabh)
And Ss-(2-Hydroxyethyl)-O-Decyl Ester
Carbono(Dithioperoxoic) Acid
pdb|2QO1|A Chain A, 2.6 Angstrom Crystal Structure Of The Complex Between 11-
(Decyldithiocarbonyloxy)-Undecanoic Acid And
Mycobacterium Tuberculosis Fabh.
pdb|2QO1|B Chain B, 2.6 Angstrom Crystal Structure Of The Complex Between 11-
(Decyldithiocarbonyloxy)-Undecanoic Acid And
Mycobacterium Tuberculosis Fabh
Length = 335
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 82/376 (21%), Positives = 142/376 (37%), Gaps = 64/376 (17%)
Query: 98 RSIYLVDFSCYRPPSHLQVKFHQFMEHSRLTGDFDESSLEFQRKILERSGLGEETYVPDA 157
RS+ L+ YRP V + +H +SS E+ I R+G+ + D
Sbjct: 11 RSVGLLSVGAYRP--ERVVTNDEICQHI-------DSSDEW---IYTRTGIKTRRFAAD- 57
Query: 158 MHYLPPRPSMAAAREEAEQVMFGALDNLFANTNVKPKDI-GILVVNCSLFNPTPSLSAMI 216
E A + A +N + DI G++V + F TP + M+
Sbjct: 58 -------------DESAASMATEACRRALSNAGLSAADIDGVIVTTNTHFLQTPPAAPMV 104
Query: 217 VNKYKLRGNIRSFNLGGMGCSAGVIAIDLAKDMLQVHRNTYAVVVSTENITQNWYFGNKK 276
+G I F+L GC+ A+ A DM++ +VV TE ++ ++
Sbjct: 105 AASLGAKG-ILGFDLS-AGCAGFGYALGAAADMIRGGGAATMLVVGTEKLSPTIDMYDRG 162
Query: 277 SMLIPNC-LFRVGGSAVLLSNKAKDRRRAKYKLVHVVRTHKGADDNAFKCVYQEQDNAGK 335
NC +F G +AV++ + + T G+D + Q+ D
Sbjct: 163 -----NCFIFADGAAAVVVG---------ETPFQGIGPTVAGSDGEQADAIRQDIDW--- 205
Query: 336 TGVSLSKDLMAIAGMALKANITTLGPLVLPISEQLLFFATLVAKKFSNAKVKPYIPDFKL 395
++ +++ + + GP V + + + A V+P
Sbjct: 206 --ITFAQNPSG-----PRPFVRLEGPAVFRWAA--FKMGDVGRRAMDAAGVRPD------ 250
Query: 396 AFDHFCIHAGGRAVIDELEKNLQLLPEHVEASRMTLHRFGNTSSSSIWYELAYTEAKGRM 455
D F H + + L KNLQL P+ V A+ + GNTS++SI +A G
Sbjct: 251 QIDVFVPHQANSRINELLVKNLQLRPDAVVAN--DIEHTGNTSAASIPLAMAELLTTGAA 308
Query: 456 RRGNRVWQIAFGSGFK 471
+ G+ I +G+G
Sbjct: 309 KPGDLALLIGYGAGLS 324
>pdb|2H84|A Chain A, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
pdb|2H84|B Chain B, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
Length = 374
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/261 (18%), Positives = 110/261 (42%), Gaps = 28/261 (10%)
Query: 210 PSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAIDLAKDMLQVHRNTYAVVVSTENITQN 269
P ++ +++ L ++ +L MGC AG+ ++ A + + +VV TE + +
Sbjct: 131 PDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAKASPRNRILVVCTEVCSLH 190
Query: 270 WYFGNKKSMLIPNCLFRVGGSAVLLSNKAKDRRRAKYKLVHVVRTHKGADDNAFKCVYQE 329
+ + ++ + +F G +A ++ + Y+++ + +NA V+
Sbjct: 191 FSNTDGGDQMVASSIFADGSAAYIIGCNPRIEETPLYEVMCSINRSFPNTENAM--VWDL 248
Query: 330 QDNAGKTGVSLSKDLMAIAGMALKANITTLGPLVLPISEQLLFFATLVAKKFSNAKVKPY 389
+ G+ S + + G ++A + TL + + L +T ++ K
Sbjct: 249 EKEGWNLGLDAS--IPIVIGSGIEAFVDTL------LDKAKLQTSTAISAKDC------- 293
Query: 390 IPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPEHVEASRMTLHRFGNTSSSSIWYELAYT 449
F IH GG++++ +E +L + P+ + + H +GN SS+S+ + + +
Sbjct: 294 ---------EFLIHTGGKSILMNIENSLGIDPKQTKNTWDVYHAYGNMSSASVIFVMDH- 343
Query: 450 EAKGRMRRGNRVWQIAFGSGF 470
A+ +AFG G
Sbjct: 344 -ARKSKSLPTYSISLAFGPGL 363
>pdb|2AJ9|A Chain A, X-Ray Crystal Structure Of W42a,R161a Double Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acp Synthase
Iii
pdb|2AJ9|B Chain B, X-Ray Crystal Structure Of W42a,R161a Double Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acp Synthase
Iii
Length = 356
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 81/376 (21%), Positives = 138/376 (36%), Gaps = 64/376 (17%)
Query: 98 RSIYLVDFSCYRPPSHLQVKFHQFMEHSRLTGDFDESSLEFQRKILERSGLGEETYVPDA 157
RS+ L+ YRP V + +H D S I R+G+ + D
Sbjct: 32 RSVGLLSVGAYRP--ERVVTNDEICQH------IDSS----DEAIYTRTGIKTRRFAAD- 78
Query: 158 MHYLPPRPSMAAAREEAEQVMFGALDNLFANTNVKPKDI-GILVVNCSLFNPTPSLSAMI 216
E A + A +N + DI G++V + F TP + M+
Sbjct: 79 -------------DESAASMATEACRRALSNAGLSAADIDGVIVTTNTHFLQTPPAAPMV 125
Query: 217 VNKYKLRGNIRSFNLGGMGCSAGVIAIDLAKDMLQVHRNTYAVVVSTENITQNWYFGNKK 276
+G I F+L GC+ A+ A DM++ +VV TE ++ +
Sbjct: 126 AASLGAKG-ILGFDLS-AGCAGFGYALGAAADMIRGGGAATMLVVGTEKLSPTIDMYDAG 183
Query: 277 SMLIPNC-LFRVGGSAVLLSNKAKDRRRAKYKLVHVVRTHKGADDNAFKCVYQEQDNAGK 335
NC +F G +AV++ + + T G+D + Q+ D
Sbjct: 184 -----NCFIFADGAAAVVVG---------ETPFQGIGPTVAGSDGEQADAIRQDIDW--- 226
Query: 336 TGVSLSKDLMAIAGMALKANITTLGPLVLPISEQLLFFATLVAKKFSNAKVKPYIPDFKL 395
++ +++ + + GP V + + + A V+P
Sbjct: 227 --ITFAQNPSG-----PRPFVRLEGPAVFRWAA--FKMGDVGRRAMDAAGVRPD------ 271
Query: 396 AFDHFCIHAGGRAVIDELEKNLQLLPEHVEASRMTLHRFGNTSSSSIWYELAYTEAKGRM 455
D F H + + L KNLQL P+ V A+ + GNTS++SI +A G
Sbjct: 272 QIDVFVPHQANSRINELLVKNLQLRPDAVVAN--DIEHTGNTSAASIPLAMAELLTTGAA 329
Query: 456 RRGNRVWQIAFGSGFK 471
+ G+ I +G+G
Sbjct: 330 KPGDLALLIGYGAGLS 345
>pdb|2QNY|A Chain A, Crystal Structure Of The Complex Between The A246f Mutant
Of Mycobacterium Beta-Ketoacyl-Acyl Carrier Protein
Synthase Iii (Fabh) And Ss-(2-Hydroxyethyl) O-Decyl
Ester Carbono(Dithioperoxoic) Acid
pdb|2QNY|B Chain B, Crystal Structure Of The Complex Between The A246f Mutant
Of Mycobacterium Beta-Ketoacyl-Acyl Carrier Protein
Synthase Iii (Fabh) And Ss-(2-Hydroxyethyl) O-Decyl
Ester Carbono(Dithioperoxoic) Acid
pdb|2QO0|A Chain A, Crystal Structure Of The Complex Between The A246f Mutant
Of Mycobacterium Beta-Ketoacyl-Acyl Carrier Protein
Synthase Iii (Fabh) And 11-(Decyldithiocarbonyloxy)-
Undecanoic Acid
pdb|2QO0|B Chain B, Crystal Structure Of The Complex Between The A246f Mutant
Of Mycobacterium Beta-Ketoacyl-Acyl Carrier Protein
Synthase Iii (Fabh) And 11-(Decyldithiocarbonyloxy)-
Undecanoic Acid
Length = 335
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 82/376 (21%), Positives = 142/376 (37%), Gaps = 64/376 (17%)
Query: 98 RSIYLVDFSCYRPPSHLQVKFHQFMEHSRLTGDFDESSLEFQRKILERSGLGEETYVPDA 157
RS+ L+ YRP V + +H +SS E+ I R+G+ + D
Sbjct: 11 RSVGLLSVGAYRP--ERVVTNDEICQHI-------DSSDEW---IYTRTGIKTRRFAAD- 57
Query: 158 MHYLPPRPSMAAAREEAEQVMFGALDNLFANTNVKPKDI-GILVVNCSLFNPTPSLSAMI 216
E A + A +N + DI G++V + F TP + M+
Sbjct: 58 -------------DESAASMATEACRRALSNAGLSAADIDGVIVTTNTHFLQTPPAAPMV 104
Query: 217 VNKYKLRGNIRSFNLGGMGCSAGVIAIDLAKDMLQVHRNTYAVVVSTENITQNWYFGNKK 276
+G I F+L GC+ A+ A DM++ +VV TE ++ ++
Sbjct: 105 AASLGAKG-ILGFDLS-AGCAGFGYALGAAADMIRGGGAATMLVVGTEKLSPTIDMYDRG 162
Query: 277 SMLIPNC-LFRVGGSAVLLSNKAKDRRRAKYKLVHVVRTHKGADDNAFKCVYQEQDNAGK 335
NC +F G +AV++ + + T G+D + Q+ D
Sbjct: 163 -----NCFIFADGAAAVVVG---------ETPFQGIGPTVAGSDGEQADAIRQDIDW--- 205
Query: 336 TGVSLSKDLMAIAGMALKANITTLGPLVLPISEQLLFFATLVAKKFSNAKVKPYIPDFKL 395
++ +++ + + GP V + + + A V+P
Sbjct: 206 --ITFAQNPSG-----PRPFVRLEGPAVFRWAA--FKMGDVGRRAMDAAGVRPD------ 250
Query: 396 AFDHFCIHAGGRAVIDELEKNLQLLPEHVEASRMTLHRFGNTSSSSIWYELAYTEAKGRM 455
D F H + + L KNLQL P+ V A+ + GNTS++SI +A G
Sbjct: 251 QIDVFVPHQFNSRINELLVKNLQLRPDAVVAN--DIEHTGNTSAASIPLAMAELLTTGAA 308
Query: 456 RRGNRVWQIAFGSGFK 471
+ G+ I +G+G
Sbjct: 309 KPGDLALLIGYGAGLS 324
>pdb|2AHB|A Chain A, X-Ray Crystal Structure Of R46a,R161a Mutant Of
Mycobacterium Tuberculosis Fabh
pdb|2AHB|B Chain B, X-Ray Crystal Structure Of R46a,R161a Mutant Of
Mycobacterium Tuberculosis Fabh
Length = 356
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 69/306 (22%), Positives = 119/306 (38%), Gaps = 38/306 (12%)
Query: 168 AAAREEAEQVMFGALDNLFANTNVKPKDI-GILVVNCSLFNPTPSLSAMIVNKYKLRGNI 226
AA E A + A +N + DI G++V + F TP + M+ +G I
Sbjct: 76 AADDESAASMATEACRRALSNAGLSAADIDGVIVTTNTHFLQTPPAAPMVAASLGAKG-I 134
Query: 227 RSFNLGGMGCSAGVIAIDLAKDMLQVHRNTYAVVVSTENITQNWYFGNKKSMLIPNC-LF 285
F+L GC+ A+ A DM++ +VV TE ++ + NC +F
Sbjct: 135 LGFDLS-AGCAGFGYALGAAADMIRGGGAATMLVVGTEKLSPTIDMYDAG-----NCFIF 188
Query: 286 RVGGSAVLLSNKAKDRRRAKYKLVHVVRTHKGADDNAFKCVYQEQDNAGKTGVSLSKDLM 345
G +AV++ + + T G+D + Q+ D ++ +++
Sbjct: 189 ADGAAAVVVG---------ETPFQGIGPTVAGSDGEQADAIRQDIDW-----ITFAQNPS 234
Query: 346 AIAGMALKANITTLGPLVLPISEQLLFFATLVAKKFSNAKVKPYIPDFKLAFDHFCIHAG 405
+ + GP V + + + A V+P D F H
Sbjct: 235 G-----PRPFVRLEGPAVFRWAA--FKMGDVGRRAMDAAGVRPD------QIDVFVPHQA 281
Query: 406 GRAVIDELEKNLQLLPEHVEASRMTLHRFGNTSSSSIWYELAYTEAKGRMRRGNRVWQIA 465
+ + L KNLQL P+ V A+ + GNTS++SI +A G + G+ I
Sbjct: 282 NSRINELLVKNLQLRPDAVVAN--DIEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIG 339
Query: 466 FGSGFK 471
+G+G
Sbjct: 340 YGAGLS 345
>pdb|3AWJ|A Chain A, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWJ|B Chain B, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWK|A Chain A, Crystal Structure Of The Polyketide Synthase 1 From
Huperzia Serrata
Length = 402
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 94/231 (40%), Gaps = 40/231 (17%)
Query: 222 LRGNIRSFNLGGMGCSAGVIAIDLAKDMLQVHRNTYAVVVSTENITQNWYFGNKKSM--L 279
LR ++ L G AG + +AKD+ + ++ +V +E + ++ + L
Sbjct: 163 LRPTVKRVMLYQQGXYAGATVLRVAKDLAENNKGARVLVACSEVTAVTFRAPSETHLDGL 222
Query: 280 IPNCLFRVGGSAVLLSNKAKDRRRAKYKLVHVVRTHKGADDNAFKCVYQEQDNAGKTGVS 339
+ + LF G +A+++ + + +H A + V + D A
Sbjct: 223 VGSALFGDGAAALIVGSDPVPQEEKPLFEIHW----------AGEAVLPDSDGA------ 266
Query: 340 LSKDLMAIAGMALKANITTLGPLVLPISEQLLFFATLVAKKFSNAKVKP----YIPDFKL 395
I G +A + I L L++K +P + P +
Sbjct: 267 -------INGHLREAGL---------IFHLLKDVPGLISKNIDKVLAEPLEYVHFPSYND 310
Query: 396 AFDHFCIHAGGRAVIDELEKNLQLLPEHVEASRMTLHRFGNTSSSSIWYEL 446
F + +H GG A++D++E L L + ++ASR L +GN SS+S+ + L
Sbjct: 311 MF--WAVHPGGPAILDQIEAKLGLSTDKMQASRDVLASYGNMSSASVLFVL 359
>pdb|3GWA|A Chain A, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWA|B Chain B, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|A Chain A, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|B Chain B, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
Length = 365
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 70/327 (21%), Positives = 128/327 (39%), Gaps = 66/327 (20%)
Query: 167 MAAAREEAEQVMFGALDNLFANTNVKPKDIGILVVNCSLFNPT-PSLSAMIVNKYKLRGN 225
+AA RE A + + A LFA V + +++ + P+ + M+ ++ + +
Sbjct: 73 IAAPRETAADLAYEAARKLFAQGAVGADQVDFVILCTQAPDYVLPTSACMLQHRLGIPTH 132
Query: 226 IRSFNLGGMGCSAGVIAIDLAKDMLQVHRNTYAVVVSTENITQNWYFGNKKSMLIPNCLF 285
+ ++ +GCS V + LAK +++ ++++ + ++ + +K LF
Sbjct: 133 AGALDVN-LGCSGYVYGLSLAKGLVETGAARCVLLLTADTYSKYLHPLDKSV----RTLF 187
Query: 286 RVGGSAVLLSNK------------AKDRRRAKYKLVH--VVRTHKGADDNAFKCVYQEQD 331
G SA + + D R A +V + R K AD + +D
Sbjct: 188 GDGASATAVIAEHGELERIGPFVFGTDGRGAPNLIVKAGLFREPKSADS-----AREHED 242
Query: 332 NAGKTGVSLSKDLMAIAGMALKANITTLGPLVLPISEQLLFFATLVAKKFSNAKVKPYIP 391
+G N+ T ++ L+ FS A+V P
Sbjct: 243 ASG--------------------NVRT---------DEHLYMNGAEVMAFSLAEV-PRAA 272
Query: 392 DFKLAF--------DHFCIHAGGRAVIDELEKNLQLLPEHVEASRMTLHRFGNTSSSSIW 443
D LA D F +H R ++D L K +++ PEH + + GNT SS++
Sbjct: 273 DRLLALAGEPRENIDCFVLHQANRFMLDALRKKMKI-PEH--KFPVLMEHCGNTVSSTLP 329
Query: 444 YELAYTEAKGRMRRGNRVWQIAFGSGF 470
L A G + RG R+ + FG G+
Sbjct: 330 LALETMRANGTLARGMRLMLLGFGVGY 356
>pdb|1UB7|A Chain A, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|B Chain B, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|C Chain C, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|D Chain D, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus
Length = 322
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 11/128 (8%)
Query: 349 GMALKANITTLGPLVLPISEQLLFFATLVAKKFSNAKVKPYIPDFKLAFDHFCIHAGGRA 408
G ++K + G V + +++ ATL A A + P D +L F H
Sbjct: 200 GTSMKNRLYMNGREVFKFAVRVMNTATLEA--IEKAGLTP--EDIRL----FVPHQANLR 251
Query: 409 VIDELEKNLQLLPEHVEASRMTLHRFGNTSSSSIWYELAYTEAKGRMRRGNRVWQIAFGS 468
+ID + L L E V + + R+GNTS++SI L GR+R G+ V ++FG+
Sbjct: 252 IIDAARERLGLPWERVA---VNVDRYGNTSTASIPLALKEAVDAGRIREGDHVLLVSFGA 308
Query: 469 GFKCNSAV 476
G +AV
Sbjct: 309 GLTWAAAV 316
>pdb|1U6S|A Chain A, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-ketoacyl-acyl Carrier Protein Synthase
Iii And Lauroyl Coenzyme A
pdb|1U6S|B Chain B, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-ketoacyl-acyl Carrier Protein Synthase
Iii And Lauroyl Coenzyme A
pdb|1U6E|A Chain A, 1.85 Angstrom Crystal Structure Of The C112a Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acyl Carrier
Protein Synthase Iii (Fabh)
pdb|1U6E|B Chain B, 1.85 Angstrom Crystal Structure Of The C112a Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acyl Carrier
Protein Synthase Iii (Fabh)
Length = 335
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 81/376 (21%), Positives = 141/376 (37%), Gaps = 64/376 (17%)
Query: 98 RSIYLVDFSCYRPPSHLQVKFHQFMEHSRLTGDFDESSLEFQRKILERSGLGEETYVPDA 157
RS+ L+ YRP V + +H +SS E+ I R+G+ + D
Sbjct: 11 RSVGLLSVGAYRP--ERVVTNDEICQHI-------DSSDEW---IYTRTGIKTRRFAAD- 57
Query: 158 MHYLPPRPSMAAAREEAEQVMFGALDNLFANTNVKPKDI-GILVVNCSLFNPTPSLSAMI 216
E A + A +N + DI G++V + F TP + M+
Sbjct: 58 -------------DESAASMATEACRRALSNAGLSAADIDGVIVTTNTHFLQTPPAAPMV 104
Query: 217 VNKYKLRGNIRSFNLGGMGCSAGVIAIDLAKDMLQVHRNTYAVVVSTENITQNWYFGNKK 276
+G I F+L G + A+ A DM++ +VV TE ++ ++
Sbjct: 105 AASLGAKG-ILGFDLS-AGAAGFGYALGAAADMIRGGGAATMLVVGTEKLSPTIDMYDRG 162
Query: 277 SMLIPNC-LFRVGGSAVLLSNKAKDRRRAKYKLVHVVRTHKGADDNAFKCVYQEQDNAGK 335
NC +F G +AV++ + + T G+D + Q+ D
Sbjct: 163 -----NCFIFADGAAAVVVG---------ETPFQGIGPTVAGSDGEQADAIRQDIDW--- 205
Query: 336 TGVSLSKDLMAIAGMALKANITTLGPLVLPISEQLLFFATLVAKKFSNAKVKPYIPDFKL 395
++ +++ + + GP V + + + A V+P
Sbjct: 206 --ITFAQNPSG-----PRPFVRLEGPAVFRWAA--FKMGDVGRRAMDAAGVRPD------ 250
Query: 396 AFDHFCIHAGGRAVIDELEKNLQLLPEHVEASRMTLHRFGNTSSSSIWYELAYTEAKGRM 455
D F H + + L KNLQL P+ V A+ + GNTS++SI +A G
Sbjct: 251 QIDVFVPHQANSRINELLVKNLQLRPDAVVAN--DIEHTGNTSAASIPLAMAELLTTGAA 308
Query: 456 RRGNRVWQIAFGSGFK 471
+ G+ I +G+G
Sbjct: 309 KPGDLALLIGYGAGLS 324
>pdb|1HN9|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HN9|B Chain B, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HND|A Chain A, Crystal Structure Of Beta-ketoacyl-acp Synthase Iii-coa
Complex
pdb|1HNJ|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Malonyl-Coa
pdb|1HNK|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii, Apo
Tetragonal Form
pdb|2EFT|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
Concentration (1.7mm) Soak)
pdb|2EFT|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
Concentration (1.7mm) Soak)
pdb|2GYO|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A
pdb|2GYO|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A
Length = 317
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 69/311 (22%), Positives = 123/311 (39%), Gaps = 41/311 (13%)
Query: 167 MAAAREEAEQVMFGALDNLFANTNVKPKDIGILVV-NCSLFNPTPSLSAMIVNKYKLRGN 225
+AA E + F A ++ IG++VV S + PS + I + ++G
Sbjct: 44 IAAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVVATTSATHAFPSAACQIQSMLGIKG- 102
Query: 226 IRSFNLGGMGCSAGVIAIDLAKDMLQVHRNTYAVVVSTENITQNWYFGNKKSMLIPNCLF 285
+F++ C+ A+ +A ++ YA+VV ++ + + ++ +++I F
Sbjct: 103 CPAFDVAA-ACAGFTYALSVADQYVKSGAVKYALVVGSDVLARTCDPTDRGTIII----F 157
Query: 286 RVGGSAVLLSNKAKDRRRAKYKLVHVVRTHKGADDNAFKCVYQEQDNAGKTGVSLSKDLM 345
G A +L A + ++ TH AD + + + NA + S L
Sbjct: 158 GDGAGAAVL---------AASEEPGIISTHLHADGSYGELLTLP--NADRVNPENSIHLT 206
Query: 346 AIAGMALKANITTLGPLVLPISEQLLFFATLVAKKFSNAKVKPYIPDFKLAFDHFCIHAG 405
K +T L +V TL A +++ +P H
Sbjct: 207 MAGNEVFKVAVTELAHIV---------DETLAANNLDRSQLDWLVP-----------HQA 246
Query: 406 GRAVIDELEKNLQLLPEHVEASRMTLHRFGNTSSSSIWYELAYTEAKGRMRRGNRVWQIA 465
+I K L + ++V +TL R GNTS++S+ L GR++ G V A
Sbjct: 247 NLRIISATAKKLGMSMDNV---VVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEA 303
Query: 466 FGSGFKCNSAV 476
FG GF SA+
Sbjct: 304 FGGGFTWGSAL 314
>pdb|2P0U|A Chain A, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
pdb|2P0U|B Chain B, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
Length = 413
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 400 FCIHAGGRAVIDELEKNLQLLPEHVEASRMTLHRFGNTSSSSIWY------ELAYTEAKG 453
+ +H GG A++D++E L+L +ASR L +GN SS+S+ + E + K
Sbjct: 318 WAVHPGGPAILDQVEAKLELEKGKFQASRDILSDYGNMSSASVLFVLDRVRERSLESNKS 377
Query: 454 RMRRGNRVWQ--IAFGSGFKCNSAVWQAL 480
G+ W I FG G + + +AL
Sbjct: 378 TFGEGSE-WGFLIGFGPGLTVETLLLRAL 405
>pdb|1EBL|A Chain A, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
pdb|1EBL|B Chain B, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
Length = 317
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 76/355 (21%), Positives = 133/355 (37%), Gaps = 55/355 (15%)
Query: 123 EHSRLTGDFDESSLEFQRKILERSGLGEETYVPDAMHYLPPRPSMAAAREEAEQVMFGAL 182
E R D ++ I+ R+G+ E +AA E F A
Sbjct: 14 EQVRTNADLEKXVDTSDEWIVTRTGIRER--------------HIAAPNETVSTXGFEAA 59
Query: 183 DNLFANTNVKPKDIGILVV-NCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVI 241
++ IG++VV S + PS + I + ++G +F++ C+
Sbjct: 60 TRAIEXAGIEKDQIGLIVVATTSATHAFPSAACQIQSXLGIKG-CPAFDVAAA-CAGFTY 117
Query: 242 AIDLAKDMLQVHRNTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGGSAVLLSNKAKDR 301
A+ +A ++ YA+VV ++ + + ++ +++I F G A +L
Sbjct: 118 ALSVADQYVKSGAVKYALVVGSDVLARTCDPTDRGTIII----FGDGAGAAVL------- 166
Query: 302 RRAKYKLVHVVRTHKGADDNAFKCVYQEQDNAGKTGVSLSKDLMAIAGMALKANITTLGP 361
A + ++ TH AD + + + NA + S L K +T L
Sbjct: 167 --AASEEPGIISTHLHADGSYGELLTLP--NADRVNPENSIHLTXAGNEVFKVAVTELAH 222
Query: 362 LVLPISEQLLFFATLVAKKFSNAKVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLP 421
+V TL A +++ +P H +I K L
Sbjct: 223 IVDE---------TLAANNNDRSQLDWLVP-----------HQANLRIISATAKKLGXSX 262
Query: 422 EHVEASRMTLHRFGNTSSSSIWYELAYTEAKGRMRRGNRVWQIAFGSGFKCNSAV 476
++V +TL R GNTS++S+ L GR++ G V AFG GF SA+
Sbjct: 263 DNV---VVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSAL 314
>pdb|3OV2|A Chain A, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|B Chain B, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|C Chain C, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|D Chain D, Curcumin Synthase 1 From Curcuma Longa
Length = 393
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 400 FCIHAGGRAVIDELEKNLQLLPEHVEASRMTLHRFGNTSSSSIWY---ELAYTEA-KGRM 455
+ H G A+ID +E LQL P+ + +R +GN S+++++ EL A +GR
Sbjct: 300 WVAHPGNWAIIDAIEAKLQLSPDKLSTARHVFTEYGNMQSATVYFVMDELRKRSAVEGRS 359
Query: 456 RRGNRV-WQI--AFGSGFKCNSAVWQAL 480
G+ + W + FG G + V +++
Sbjct: 360 TTGDGLQWGVLLGFGPGLSIETVVLRSM 387
>pdb|3OV3|A Chain A, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|B Chain B, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|C Chain C, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|D Chain D, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
Length = 393
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 400 FCIHAGGRAVIDELEKNLQLLPEHVEASRMTLHRFGNTSSSSIWY---ELAYTEA-KGRM 455
+ H G A+ID +E LQL P+ + +R +GN S+++++ EL A +GR
Sbjct: 300 WVAHPGNWAIIDAIEAKLQLSPDKLSTARHVFTEYGNMQSATVYFVMDELRKRSAVEGRS 359
Query: 456 RRGNRV-WQI--AFGSGFKCNSAVWQAL 480
G+ + W + FG G + V +++
Sbjct: 360 TTGDGLQWGVLLGFGPGLSIETVVLRSM 387
>pdb|3ROW|A Chain A, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3ROW|B Chain B, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3S1Z|A Chain A, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S1Z|B Chain B, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S20|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
pdb|3S20|B Chain B, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
Length = 344
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 122/303 (40%), Gaps = 52/303 (17%)
Query: 188 NTNVKPKDIGILVVNCSLFNP--TPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAIDL 245
+ N+ + IG+L+ N S+ PS ++++ + + +F++ C A + +D+
Sbjct: 81 DANIGIEKIGLLI-NTSVSRDYLEPSTASIVSGNLGVSDHCMTFDVAN-ACLAFINGMDI 138
Query: 246 AKDMLQVHRNTYAVVVSTENITQNW-YFGNKKSMLIPNCL---FRVGGSAVLLSNKAKDR 301
A ML+ YA+VV E T N Y + M P+ FR +A+ L A
Sbjct: 139 AARMLERGEIDYALVVDGE--TANLVYEKTLERMTSPDVTEEEFRNELAALTLGCGAAAM 196
Query: 302 RRAKYKLVHVVRTHKGADDNAFKCVYQEQDNAGKTGVSLSKDLMAIAGMALKANITTLGP 361
A+ +LV +KG GV+ S A + N G
Sbjct: 197 VMARSELVPDAPRYKG-------------------GVTRS---------ATEWNKLCRGN 228
Query: 362 LVLPISEQLLFFAT---LVAKKFSNAK-VKPYIPDFKLAFDHFCIHAGGRAVIDELEKNL 417
L +++ L L K F AK V + + D F IH R K+
Sbjct: 229 LDRMVTDTRLLLIEGIKLAQKTFVAAKQVLGWAVE---ELDQFVIHQVSRPHTAAFVKSF 285
Query: 418 QLLPEHVEASRMTLH-RFGNTSSSSIWYELAYTEAKGRMRRGNRVWQIAFGSGFKCNSA- 475
+ P V MT+ GN +S+ L+ + GR+++G+R+ + GSG C+ A
Sbjct: 286 GIDPAKV----MTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNCSMAE 341
Query: 476 -VW 477
VW
Sbjct: 342 VVW 344
>pdb|3S21|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal)
pdb|3S23|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal) Xe Derivative
Length = 345
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 122/303 (40%), Gaps = 52/303 (17%)
Query: 188 NTNVKPKDIGILVVNCSLFNP--TPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAIDL 245
+ N+ + IG+L+ N S+ PS ++++ + + +F++ C A + +D+
Sbjct: 82 DANIGIEKIGLLI-NTSVSRDYLEPSTASIVSGNLGVSDHCMTFDVAN-ACLAFINGMDI 139
Query: 246 AKDMLQVHRNTYAVVVSTENITQNW-YFGNKKSMLIPNCL---FRVGGSAVLLSNKAKDR 301
A ML+ YA+VV E T N Y + M P+ FR +A+ L A
Sbjct: 140 AARMLERGEIDYALVVDGE--TANLVYEKTLERMTSPDVTEEEFRNELAALTLGCGAAAM 197
Query: 302 RRAKYKLVHVVRTHKGADDNAFKCVYQEQDNAGKTGVSLSKDLMAIAGMALKANITTLGP 361
A+ +LV +KG GV+ S A + N G
Sbjct: 198 VMARSELVPDAPRYKG-------------------GVTRS---------ATEWNKLCRGN 229
Query: 362 LVLPISEQLLFFAT---LVAKKFSNAK-VKPYIPDFKLAFDHFCIHAGGRAVIDELEKNL 417
L +++ L L K F AK V + + D F IH R K+
Sbjct: 230 LDRMVTDTRLLLIEGIKLAQKTFVAAKQVLGWAVE---ELDQFVIHQVSRPHTAAFVKSF 286
Query: 418 QLLPEHVEASRMTLH-RFGNTSSSSIWYELAYTEAKGRMRRGNRVWQIAFGSGFKCNSA- 475
+ P V MT+ GN +S+ L+ + GR+++G+R+ + GSG C+ A
Sbjct: 287 GIDPAKV----MTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNCSMAE 342
Query: 476 -VW 477
VW
Sbjct: 343 VVW 345
>pdb|3IL9|A Chain A, Structure Of E. Coli Fabh
pdb|3IL9|B Chain B, Structure Of E. Coli Fabh
Length = 340
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 70/312 (22%), Positives = 123/312 (39%), Gaps = 43/312 (13%)
Query: 167 MAAAREEAEQVMFGALDNLFANTNVKPKDIGILVV-NCSLFNPTPSLSAMIVNKYKLRGN 225
+AA E + F A ++ IG++VV S + PS + I + ++G
Sbjct: 67 IAAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVVATTSATHAFPSAACQIQSMLGIKG- 125
Query: 226 IRSFNLGGMGCSAG-VIAIDLAKDMLQVHRNTYAVVVSTENITQNWYFGNKKSMLIPNCL 284
+F++ AG A+ +A ++ YA+VV ++ + + ++ +++I
Sbjct: 126 CPAFDVAA--AXAGFTYALSVADQYVKSGAVKYALVVGSDVLARTCDPTDRGTIII---- 179
Query: 285 FRVGGSAVLLSNKAKDRRRAKYKLVHVVRTHKGADDNAFKCVYQEQDNAGKTGVSLSKDL 344
F G A +L A + ++ TH AD + + + NA + S L
Sbjct: 180 FGDGAGAAVL---------AASEEPGIISTHLHADGSYGELLTLP--NADRVNPENSIHL 228
Query: 345 MAIAGMALKANITTLGPLVLPISEQLLFFATLVAKKFSNAKVKPYIPDFKLAFDHFCIHA 404
K +T L +V TL A +++ +P H
Sbjct: 229 TMAGNEVFKVAVTELAHIV---------DETLAANNLDRSQLDWLVP-----------HQ 268
Query: 405 GGRAVIDELEKNLQLLPEHVEASRMTLHRFGNTSSSSIWYELAYTEAKGRMRRGNRVWQI 464
+I K L + ++V +TL R GNTS++S+ L GR++ G V
Sbjct: 269 ANLRIISATAKKLGMSMDNV---VVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLE 325
Query: 465 AFGSGFKCNSAV 476
AFG GF SA+
Sbjct: 326 AFGGGFTWGSAL 337
>pdb|1HNH|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Degraded Form Of Acetyl-Coa
Length = 317
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 77/356 (21%), Positives = 133/356 (37%), Gaps = 57/356 (16%)
Query: 123 EHSRLTGDFDESSLEFQRKILERSGLGEETYVPDAMHYLPPRPSMAAAREEAEQVMFGAL 182
E R D ++ I+ R+G+ E +AA E F A
Sbjct: 14 EQVRTNADLEKXVDTSDEWIVTRTGIRER--------------HIAAPNETVSTXGFEAA 59
Query: 183 DNLFANTNVKPKDIGILVV-NCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAG-V 240
++ IG++VV S + PS + I + ++G +F++ AG
Sbjct: 60 TRAIEXAGIEKDQIGLIVVATTSATHAFPSAACQIQSXLGIKG-CPAFDVAA--AXAGFT 116
Query: 241 IAIDLAKDMLQVHRNTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGGSAVLLSNKAKD 300
A+ +A ++ YA+VV ++ + + ++ +++I F G A +L
Sbjct: 117 YALSVADQYVKSGAVKYALVVGSDVLARTCDPTDRGTIII----FGDGAGAAVL------ 166
Query: 301 RRRAKYKLVHVVRTHKGADDNAFKCVYQEQDNAGKTGVSLSKDLMAIAGMALKANITTLG 360
A + ++ TH AD + + + NA + S L K +T L
Sbjct: 167 ---AASEEPGIISTHLHADGSYGELLTLP--NADRVNPENSIHLTXAGNEVFKVAVTELA 221
Query: 361 PLVLPISEQLLFFATLVAKKFSNAKVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLL 420
+V TL A +++ +P H +I K L
Sbjct: 222 HIV---------DETLAANNLDRSQLDWLVP-----------HQANLRIISATAKKLGXS 261
Query: 421 PEHVEASRMTLHRFGNTSSSSIWYELAYTEAKGRMRRGNRVWQIAFGSGFKCNSAV 476
++V +TL R GNTS++S+ L GR++ G V AFG GF SA+
Sbjct: 262 XDNV---VVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSAL 314
>pdb|1MZS|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii With
Bound Dichlorobenzyloxy-Indole-Carboxylic Acid Inhibitor
Length = 317
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 70/312 (22%), Positives = 123/312 (39%), Gaps = 43/312 (13%)
Query: 167 MAAAREEAEQVMFGALDNLFANTNVKPKDIGILVV-NCSLFNPTPSLSAMIVNKYKLRGN 225
+AA E + F A ++ IG++VV S + PS + I + ++G
Sbjct: 44 IAAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVVATTSATHAFPSAACQIQSMLGIKG- 102
Query: 226 IRSFNLGGMGCSAG-VIAIDLAKDMLQVHRNTYAVVVSTENITQNWYFGNKKSMLIPNCL 284
+F++ AG A+ +A ++ YA+VV ++ + + ++ +++I
Sbjct: 103 CPAFDVAA--AXAGFTYALSVADQYVKSGAVKYALVVGSDVLARTCDPTDRGTIII---- 156
Query: 285 FRVGGSAVLLSNKAKDRRRAKYKLVHVVRTHKGADDNAFKCVYQEQDNAGKTGVSLSKDL 344
F G A +L A + ++ TH AD + + + NA + S L
Sbjct: 157 FGDGAGAAVL---------AASEEPGIISTHLHADGSYGELLTLP--NADRVNPENSIHL 205
Query: 345 MAIAGMALKANITTLGPLVLPISEQLLFFATLVAKKFSNAKVKPYIPDFKLAFDHFCIHA 404
K +T L +V TL A +++ +P H
Sbjct: 206 TMAGNEVFKVAVTELAHIV---------DETLAANNLDRSQLDWLVP-----------HQ 245
Query: 405 GGRAVIDELEKNLQLLPEHVEASRMTLHRFGNTSSSSIWYELAYTEAKGRMRRGNRVWQI 464
+I K L + ++V +TL R GNTS++S+ L GR++ G V
Sbjct: 246 ANLRIISATAKKLGMSMDNV---VVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLE 302
Query: 465 AFGSGFKCNSAV 476
AFG GF SA+
Sbjct: 303 AFGGGFTWGSAL 314
>pdb|2EBD|A Chain A, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
pdb|2EBD|B Chain B, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
Length = 309
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 63/333 (18%), Positives = 145/333 (43%), Gaps = 69/333 (20%)
Query: 142 ILERSGLGEETYV-PDAMHYLPPRPSMAAAREEAEQVMFGALDNLFANTNVKPKDIGILV 200
I R+G+ E + + Y+ + + A RE N+ P+++ +++
Sbjct: 33 ITTRTGIKERRIAKEETITYMATQAAKEALRE----------------ANLSPEELDLII 76
Query: 201 VNCSLFNPT---PSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAIDLAKDMLQVHRNTY 257
+ + P PS + ++ + K +G + +F++ CS + A+D+A ++ +
Sbjct: 77 L--ATLTPQKRFPSTACLVQAQLKAKG-VYAFDISA-ACSGFIYALDIADSFIKSGKAKN 132
Query: 258 AVVVSTENITQNWYFGNKKSMLIPNCLFRVGGSAVLLSNKAKDRRRAKYKLVHVVRTHKG 317
+V+ E +++ + ++ + + LF G AV+++ +++D+ ++ T
Sbjct: 133 VLVIGAEKLSEAVDWEDRSTCV----LFGDGAGAVVVT-RSEDKS-------DILATRMY 180
Query: 318 ADDNAFKCVYQEQDNAGKTGVSLSKDLMAIAGMALKANITTLGPLVLPISEQLLFFATLV 377
A+ + + ++ DN G + ++L +A +++ + ++L
Sbjct: 181 AEGSLEELLHA--DNCGYIRMK-GRELFKVAVRSME-----------EVCREVL------ 220
Query: 378 AKKFSNAKVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPEHVEASRMTLHRFGNT 437
A VKP + L H A R +I+ L + L + E V + + ++GNT
Sbjct: 221 ----EKAGVKP--EEVSLVIPH---QANVR-IINALAEKLNIPKEKV---FVNIQKYGNT 267
Query: 438 SSSSIWYELAYTEAKGRMRRGNRVWQIAFGSGF 470
S++SI L +G+++RG+ + A G G
Sbjct: 268 SAASIPIALHEAIKEGKVKRGDLILMTAMGGGL 300
>pdb|3FK5|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Iii, Fabh (Xoo4209) From Xanthomonas Oryzae Pv.
Oryzae Kacc10331
Length = 338
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 397 FDHFCIHAGGRAVIDELEKNLQLLPEHVEASRMTLH-RFGNTSSSSIWYELAYTEAKGRM 455
D F IH R K+ + P V MT+ GN +S+ L+ + GR+
Sbjct: 259 LDQFVIHQVSRPHTAAFVKSFGIDPAKV----MTIFGEHGNIGPASVPIVLSKLKELGRL 314
Query: 456 RRGNRVWQIAFGSGFKCNSA--VW 477
++G+R+ + GSG C+ A VW
Sbjct: 315 KKGDRIALLGIGSGLNCSMAEVVW 338
>pdb|1MZJ|A Chain A, Crystal Structure Of The Priming Beta-Ketosynthase From
The R1128 Polyketide Biosynthetic Pathway
pdb|1MZJ|B Chain B, Crystal Structure Of The Priming Beta-Ketosynthase From
The R1128 Polyketide Biosynthetic Pathway
Length = 339
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 77/335 (22%), Positives = 123/335 (36%), Gaps = 63/335 (18%)
Query: 169 AAREEAEQVM-FGALDNLFANTNVKPKDIGILVVNC-SLFNPTPSLSAMIVNKYKLRGNI 226
A +E QVM A + V P +I ++VV+ + F TP LS I ++ N
Sbjct: 54 AEPDETIQVMGVAASRRALEHAGVDPAEIDLVVVSTMTNFVHTPPLSVAIAHELGAD-NA 112
Query: 227 RSFNLGGMGCSAGVIAIDLAKDMLQVHRNTYAVVVSTENITQNWYFGNKKSMLIPNCLFR 286
F+L C+ A+ +A D ++ + + +VV+TE +T ++ + LF
Sbjct: 113 GGFDLSAA-CAGFCHALSIAADAVESGGSRHVLVVATERMTDVIDLADRSL----SFLFG 167
Query: 287 VGGSAVLLSNKAKDRRRAKYKLVHVVRTHKGADDNAFKCV--------YQEQDNAGKTGV 338
G A ++ + + +G D + Y E + G+ +
Sbjct: 168 DGAGAAVV---------GPSDVPGIGPVVRGIDGTGLGSLHMSSSWDQYVEDPSVGRPAL 218
Query: 339 SLSKDLM---AIAGMALKANITTLGPLVLPISEQLLFFATLVAKKFSNAKVKPYIPDFKL 395
+ + A+A V+P + + L A L
Sbjct: 219 VMDGKRVFRWAVAD-------------VVPAAREALEVAGLTVGDLVA------------ 253
Query: 396 AFDHFCIHAGGRAVIDELEKNLQLLPEHVEASRMTLHRFGNTSSSSIWYELAYTEAKGRM 455
F H +ID L L + PEHV SR GNTSS+S+ L G +
Sbjct: 254 ----FVPHQANLRIIDVLVDRLGV-PEHVVVSR-DAEDTGNTSSASVALALDRLVRSGAV 307
Query: 456 RRGNRVWQIAFGSGFKCNSAVWQALRNVKPSPNSP 490
G I FG+G S QAL P P++P
Sbjct: 308 PGGGPALMIGFGAGL---SYAGQALLLPDP-PSTP 338
>pdb|3EUQ|A Chain A, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|B Chain B, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|C Chain C, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|D Chain D, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
Length = 379
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 397 FDHFCIHAGGRAVIDELEKNLQLLPEHVEASRMTLHRFGNTSSSSIWYELAYTEAK--GR 454
FD + +H GG ++ E + L PEH+ AS GN+SS++I+ L K
Sbjct: 291 FD-WAMHPGGATILSGAESAMGLTPEHMRASYDRYINHGNSSSATIFSVLNRLREKDMDA 349
Query: 455 MRRGNRVWQIAFGSGF 470
+ G +V + G F
Sbjct: 350 LAPGGKVKEYVVGCAF 365
>pdb|3EUO|A Chain A, Crystal Structure Of A Fungal Type Iii Polyketide
Synthase, Oras
pdb|3EUO|B Chain B, Crystal Structure Of A Fungal Type Iii Polyketide
Synthase, Oras
pdb|3EUT|A Chain A, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|B Chain B, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|C Chain C, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|D Chain D, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
Length = 379
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 397 FDHFCIHAGGRAVIDELEKNLQLLPEHVEASRMTLHRFGNTSSSSIWYELAYTEAK--GR 454
FD + +H GG ++ E + L PEH+ AS GN+SS++I+ L K
Sbjct: 291 FD-WAMHPGGATILSGAESAMGLTPEHMRASYDRYINHGNSSSATIFSVLNRLREKDMDA 349
Query: 455 MRRGNRVWQIAFGSGF 470
+ G +V + G F
Sbjct: 350 LAPGGKVKEYVVGCAF 365
>pdb|3E1H|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase
Pksiiinc From Neurospora Crassa
pdb|3E1H|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase
Pksiiinc From Neurospora Crassa
Length = 465
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 397 FDHFCIHAGGRAVIDELEKNLQLLPEHVEASRMTLHRFGNTSSSSIWYELAYTEAK--GR 454
FD + +H GG ++ E + L PEH+ AS GN+SS++I+ L K
Sbjct: 320 FD-WAMHPGGATILSGAESAMGLTPEHMRASYDRYINHGNSSSATIFSVLNRLREKDMDA 378
Query: 455 MRRGNRVWQIAFGSGF 470
+ G +V + G F
Sbjct: 379 LAPGGKVKEYVVGCAF 394
>pdb|3IL3|A Chain A, Structure Of Haemophilus Influenzae Fabh
Length = 323
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 71/354 (20%), Positives = 134/354 (37%), Gaps = 56/354 (15%)
Query: 124 HSRLTGDFDESSLEFQRKILERSGLGEETYVPDAMHYLPPRPSMAAAREEAEQVMFGALD 183
H R D ++ I+ RSG+ E +AA E + F A
Sbjct: 22 HIRTNADLEKMVDTSDEWIVTRSGIRER--------------RIAAEDETVATMGFEAAK 67
Query: 184 NLFANTNVKPKDIGILVV-NCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIA 242
N + P+DI +++V S + PS + + + I SF+L + V A
Sbjct: 68 NAIEAAQINPQDIELIIVATTSHSHAYPSAACQVQGLLNIDDAI-SFDLAA-AXTGFVYA 125
Query: 243 IDLAKDMLQVHRNTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGGSAVLLSNKAKDRR 302
+ +A ++ + A+V+ ++ ++ ++ +++ LF G AV+L ++
Sbjct: 126 LSVADQFIRAGKVKKALVIGSDLNSRKLDETDRSTVV----LFGDGAGAVILEASEQEG- 180
Query: 303 RAKYKLVHVVRTHKGADDNAFKCVYQEQDNAGKTGVSLSKDLMAIAGMALKANITTLGPL 362
+ H AD N + Q + K+G + ++ N T
Sbjct: 181 ------IISTHLHASADKNNALVLAQPERGIEKSGY-----------IEMQGN-ETFKLA 222
Query: 363 VLPISEQLLFFATLVAKKFSNAKVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPE 422
V +S + TL+A + +P H +I K L++
Sbjct: 223 VRELSN--VVEETLLANNLDKKDLDWLVP-----------HQANLRIITATAKKLEMDMS 269
Query: 423 HVEASRMTLHRFGNTSSSSIWYELAYTEAKGRMRRGNRVWQIAFGSGFKCNSAV 476
V +TL ++ N S++++ L GR++RG + AFG G+ SA+
Sbjct: 270 QV---VVTLDKYANNSAATVPVALDEAIRDGRIQRGQLLLLEAFGGGWTWGSAL 320
>pdb|4DFE|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|B Chain B, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|C Chain C, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|D Chain D, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
Length = 333
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 59/289 (20%), Positives = 117/289 (40%), Gaps = 41/289 (14%)
Query: 190 NVKPKDIGILVVNCSLFNPT-PSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAIDLAKD 248
++ P+ I +++V S + PS + ++ NK +R + +F++ + S A+ A
Sbjct: 81 DIDPQSIDLIIVATSTPDFVFPSTACLLQNKLGIRNHGAAFDVQAV-XSGFAYAVATADS 139
Query: 249 MLQVHRNTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGGSAVLLSNKAKDRRRAKYKL 308
++ ++ A+V+ E ++ F ++ + + LF G AV+L +A D
Sbjct: 140 FIRSGQHRTALVIGAETFSRILDFKDRTTCV----LFGDGAGAVIL--QASDEPGVLASA 193
Query: 309 VHVVRTHKGADDNAFKCVYQEQDNAGKTGVS-LSKDLMAIAGMALKANITTLGPLVLPIS 367
+H +H C + +G + L D A+ +A+ ++ ++
Sbjct: 194 LHADGSHSN-----ILCTPGNVNGGVVSGSAFLHMDGQAVFKLAVN--------VLEKVA 240
Query: 368 EQLLFFATLVAKKFSNAKVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPEHVEAS 427
+ L A L A++ D H ++ + L L E +
Sbjct: 241 VEALEKANLSAEQI----------------DWLIPHQANIRIMQSTCRKLGLPQERM--- 281
Query: 428 RMTLHRFGNTSSSSIWYELAYTEAKGRMRRGNRVWQIAFGSGFKCNSAV 476
+T+ GNTS++SI L GR++RG V G GF ++V
Sbjct: 282 IVTVGEHGNTSAASIPLALDVAVRDGRIKRGQNVLIEGVGGGFTWGASV 330
>pdb|1ZOW|A Chain A, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|B Chain B, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|C Chain C, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|D Chain D, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|3IL7|A Chain A, Crystal Structure Of S. Aureus Fabh
pdb|3IL7|B Chain B, Crystal Structure Of S. Aureus Fabh
Length = 313
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 57/299 (19%), Positives = 126/299 (42%), Gaps = 58/299 (19%)
Query: 186 FANTNVKPKDIGILVVNCSLFN-PTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAID 244
A+ ++P+DI +++V + + P P+++ M+ + G + S + CS + ++
Sbjct: 63 IADAGIQPEDIDMIIVATATGDMPFPTVANMLQERLG-TGKVASMDQLA-ACSGFMYSMI 120
Query: 245 LAKDMLQVHRNTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGGSAVLLSNKAKDRRRA 304
AK +Q +VV + +++ ++ + + LF G AV++ ++ R
Sbjct: 121 TAKQYVQSGDYHNILVVGADKLSKITDLTDRSTAV----LFGDGAGAVIIGEVSEGRGII 176
Query: 305 KYKLVHVVRTHKGADDNAFKCVYQEQDNAGKTGVSLSKDLMAIAGMALKANITTLGPLVL 364
Y++ G+D K +Y ++D GK LK N G V
Sbjct: 177 SYEM--------GSDGTGGKHLYLDKDT-GK----------------LKMN----GREVF 207
Query: 365 PISEQLLFFA-TLVAKK--FSNAKVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLP 421
+ +++ A T V +K ++ + +IP H +++ + L +
Sbjct: 208 KFAVRIMGDASTRVVEKANLTSDDIDLFIP-----------HQANIRIMESARERLGISK 256
Query: 422 EHVEASRMTLHRFGNTSSSSIWYELAYTEAKGRMRRGNRVWQIAFGSGFKCNSAVWQAL 480
+ + S ++++GNTS++SI + G+++ + + + FG G W A+
Sbjct: 257 DKMSVS---VNKYGNTSAASIPLSIDQELKNGKLKDDDTIVLVGFGGGL-----TWGAM 307
>pdb|1XPL|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPM|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
Length = 390
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 189 TNVKPKDIGILVVNC-SLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAIDLAK 247
T+ K IG+++V S + + + I N ++ R F + C A AI LAK
Sbjct: 63 TDEDKKKIGMVIVATESAVDAAKAAAVQIHNLLGIQPFARCFEMKEAXCYAATPAIQLAK 122
Query: 248 DMLQVHRNTYAVVVSTE 264
D L N +V++T+
Sbjct: 123 DYLATRPNEKVLVIATD 139
>pdb|1XPK|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
pdb|1XPK|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
Length = 388
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 189 TNVKPKDIGILVVNC-SLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAIDLAK 247
T+ K IG+++V S + + + I N ++ R F + C A AI LAK
Sbjct: 63 TDEDKKKIGMVIVATESAVDAAKAAAVQIHNLLGIQPFARCFEMKEAXCYAATPAIQLAK 122
Query: 248 DMLQVHRNTYAVVVSTE 264
D L N +V++T+
Sbjct: 123 DYLATRPNEKVLVIATD 139
>pdb|1RW0|A Chain A, Crystal Structure Of Protein Yfih From Salmonella Enterica
Serovar Typhi, Pfam Duf152
pdb|1RW0|B Chain B, Crystal Structure Of Protein Yfih From Salmonella Enterica
Serovar Typhi, Pfam Duf152
Length = 243
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 421 PEHVEASRMTLHRFGNTSSSSIWYE 445
PEHVE +R L GN S +W E
Sbjct: 44 PEHVEENRKRLFAAGNLPSKPVWLE 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,885,870
Number of Sequences: 62578
Number of extensions: 536071
Number of successful extensions: 1333
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1257
Number of HSP's gapped (non-prelim): 86
length of query: 504
length of database: 14,973,337
effective HSP length: 103
effective length of query: 401
effective length of database: 8,527,803
effective search space: 3419649003
effective search space used: 3419649003
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)