Query 010689
Match_columns 504
No_of_seqs 265 out of 1182
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 12:11:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010689.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010689hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4bbr_M Transcription initiatio 100.0 2E-55 6.9E-60 453.7 12.0 266 2-272 22-329 (345)
2 3k7a_M Transcription initiatio 100.0 7.8E-54 2.7E-58 442.5 8.2 263 2-274 22-331 (345)
3 1ais_B TFB TFIIB, protein (tra 100.0 8.4E-40 2.9E-44 312.3 23.4 190 64-260 2-191 (200)
4 1c9b_A General transcription f 100.0 3.4E-36 1.2E-40 288.9 22.2 184 68-260 2-185 (207)
5 1zp2_A RNA polymerase II holoe 99.9 1.4E-22 4.9E-27 197.9 19.2 181 71-261 28-217 (235)
6 2i53_A Cyclin K; cell cycle, t 99.8 1.8E-19 6.1E-24 177.9 21.1 181 72-261 42-248 (258)
7 2ivx_A Cyclin-T2; transcriptio 99.8 9E-19 3.1E-23 173.0 22.4 186 67-261 26-237 (257)
8 3rgf_B Cyclin-C; protein kinas 99.8 4.8E-18 1.6E-22 170.7 21.2 184 67-261 38-239 (285)
9 2b9r_A Human cyclin B1; cell c 99.8 3.2E-18 1.1E-22 170.5 19.6 180 72-260 39-221 (269)
10 2cch_B Cyclin A2, cyclin-A; co 99.8 1.4E-17 4.9E-22 164.9 18.6 181 72-260 40-224 (260)
11 1ngm_B Transcription factor II 99.8 7.8E-20 2.7E-24 143.9 0.8 60 402-461 11-71 (72)
12 2pk2_A Cyclin-T1, protein TAT; 99.8 4.6E-18 1.6E-22 176.0 14.3 181 72-261 39-244 (358)
13 2w96_A G1/S-specific cyclin-D1 99.7 6.1E-17 2.1E-21 161.3 19.7 180 72-260 58-253 (271)
14 1jkw_A Cyclin H; cell cycle, c 99.7 3.5E-16 1.2E-20 159.8 20.4 164 66-236 51-229 (323)
15 1g3n_C V-cyclin; cyclin-depend 99.7 9E-16 3.1E-20 151.7 17.2 182 72-260 52-244 (257)
16 2f2c_A Cyclin homolog, V-cycli 99.7 2.4E-15 8.2E-20 148.4 20.0 183 72-261 53-245 (254)
17 1w98_B Cyclin E, G1/S-specific 99.6 2.2E-14 7.4E-19 143.9 19.8 175 72-260 51-238 (283)
18 3g33_B CCND3 protein; Ser/Thr 99.6 7.9E-14 2.7E-18 141.3 19.7 183 72-261 72-264 (306)
19 1ais_B TFB TFIIB, protein (tra 99.3 3.7E-12 1.3E-16 120.8 11.7 92 74-167 108-199 (200)
20 1dl6_A Transcription factor II 99.1 1.9E-11 6.4E-16 93.5 3.9 44 2-45 12-55 (58)
21 1c9b_A General transcription f 99.1 2.4E-10 8.1E-15 109.0 11.8 92 74-167 102-193 (207)
22 1f5q_B Gamma herpesvirus cycli 99.0 2.7E-08 9.2E-13 98.0 19.7 177 73-260 51-238 (252)
23 1pft_A TFIIB, PFTFIIBN; N-term 98.9 4.6E-10 1.6E-14 83.2 4.0 44 2-45 6-49 (50)
24 3k1f_M Transcription initiatio 98.8 8.3E-10 2.9E-14 100.8 1.8 42 3-44 23-66 (197)
25 4bbr_M Transcription initiatio 98.6 9.1E-08 3.1E-12 98.3 10.0 87 173-261 127-213 (345)
26 3k7a_M Transcription initiatio 98.5 1.1E-08 3.7E-13 105.3 0.0 86 75-162 236-321 (345)
27 1zp2_A RNA polymerase II holoe 97.4 0.00058 2E-08 65.9 10.5 66 177-244 33-99 (235)
28 2cch_B Cyclin A2, cyclin-A; co 96.9 0.0029 9.9E-08 61.9 8.9 88 74-163 139-228 (260)
29 2b9r_A Human cyclin B1; cell c 96.8 0.0018 6.3E-08 63.7 7.3 87 74-162 138-224 (269)
30 2ivx_A Cyclin-T2; transcriptio 96.7 0.0055 1.9E-07 59.6 9.6 68 177-246 36-103 (257)
31 2i53_A Cyclin K; cell cycle, t 96.7 0.0059 2E-07 59.4 9.6 67 177-245 46-112 (258)
32 3h4c_A Transcription factor TF 96.6 0.02 6.8E-07 53.7 12.0 88 74-164 15-105 (260)
33 1jkw_A Cyclin H; cell cycle, c 96.6 0.0098 3.3E-07 60.2 11.0 71 177-247 62-132 (323)
34 2w96_A G1/S-specific cyclin-D1 96.5 0.0068 2.3E-07 59.6 8.7 90 74-165 157-259 (271)
35 3m03_A ORC6, origin recognitio 96.4 0.017 5.9E-07 47.9 9.2 80 78-161 6-91 (95)
36 3rgf_B Cyclin-C; protein kinas 96.4 0.013 4.6E-07 58.0 10.1 66 177-244 48-114 (285)
37 2pk2_A Cyclin-T1, protein TAT; 96.3 0.007 2.4E-07 62.2 7.5 68 176-245 42-109 (358)
38 2f2c_A Cyclin homolog, V-cycli 96.2 0.019 6.4E-07 55.9 9.7 86 75-162 153-247 (254)
39 1g3n_C V-cyclin; cyclin-depend 95.9 0.02 6.8E-07 55.7 8.7 90 74-163 151-248 (257)
40 1qxf_A GR2, 30S ribosomal prot 95.7 0.0035 1.2E-07 48.3 1.5 47 2-59 8-54 (66)
41 4ell_A Retinoblastoma-associat 95.4 0.036 1.2E-06 57.7 8.5 73 72-145 280-354 (411)
42 3j20_W 30S ribosomal protein S 95.4 0.0049 1.7E-07 47.1 1.5 31 2-32 16-46 (63)
43 2xzm_6 RPS27E; ribosome, trans 95.2 0.0062 2.1E-07 48.8 1.4 31 2-32 33-63 (81)
44 1w98_B Cyclin E, G1/S-specific 95.1 0.11 3.8E-06 51.3 10.8 96 177-274 55-157 (283)
45 2r7g_A PP110, retinoblastoma-a 95.0 0.07 2.4E-06 54.4 9.0 74 70-144 214-289 (347)
46 3u5c_b RP61, YS20, 40S ribosom 94.9 0.0077 2.6E-07 48.3 1.2 31 2-32 35-65 (82)
47 3g33_B CCND3 protein; Ser/Thr 94.6 0.11 3.7E-06 52.0 9.3 89 75-163 172-267 (306)
48 4elj_A Retinoblastoma-associat 94.6 0.08 2.7E-06 58.1 8.9 74 70-144 523-598 (656)
49 3iz6_X 40S ribosomal protein S 94.5 0.0087 3E-07 48.4 0.8 31 2-32 37-67 (86)
50 2js4_A UPF0434 protein BB2007; 94.4 0.02 7E-07 44.9 2.6 28 2-30 9-36 (70)
51 2jny_A Uncharacterized BCR; st 94.3 0.023 7.8E-07 44.2 2.7 28 2-30 11-38 (67)
52 2qdj_A Retinoblastoma-associat 94.3 0.14 4.9E-06 51.2 9.2 77 77-159 5-86 (304)
53 2pk7_A Uncharacterized protein 94.2 0.025 8.6E-07 44.3 2.8 28 2-30 9-36 (69)
54 2jr6_A UPF0434 protein NMA0874 94.1 0.025 8.5E-07 44.2 2.5 28 2-30 9-36 (68)
55 1vq8_Z 50S ribosomal protein L 94.0 0.02 6.8E-07 46.5 1.9 32 3-35 29-60 (83)
56 2hf1_A Tetraacyldisaccharide-1 93.8 0.029 9.8E-07 43.8 2.4 28 2-30 9-36 (68)
57 3j20_Y 30S ribosomal protein S 92.7 0.056 1.9E-06 39.6 2.3 27 3-30 21-47 (50)
58 2k4x_A 30S ribosomal protein S 91.5 0.094 3.2E-06 39.1 2.4 28 1-29 18-45 (55)
59 3m03_A ORC6, origin recognitio 91.1 1.1 3.7E-05 37.1 8.5 76 179-259 6-88 (95)
60 4elj_A Retinoblastoma-associat 90.8 0.89 3.1E-05 49.9 10.2 77 77-159 7-88 (656)
61 2jt1_A PEFI protein; solution 88.9 0.25 8.7E-06 39.3 3.0 29 232-260 22-50 (77)
62 2akl_A PHNA-like protein PA012 86.1 0.9 3.1E-05 39.5 5.0 28 2-31 28-55 (138)
63 1qyp_A RNA polymerase II; tran 86.1 0.31 1E-05 36.3 1.8 31 2-32 16-55 (57)
64 1tc3_C Protein (TC3 transposas 86.1 0.41 1.4E-05 32.9 2.4 28 233-260 20-47 (51)
65 2k5r_A Uncharacterized protein 84.2 0.41 1.4E-05 39.8 1.9 13 18-30 51-63 (97)
66 2pmi_B PHO85 cyclin PHO80, ami 83.6 16 0.00055 36.1 13.4 105 74-186 77-185 (293)
67 3j21_i 50S ribosomal protein L 82.8 0.64 2.2E-05 37.5 2.4 33 3-36 37-69 (83)
68 3h0g_I DNA-directed RNA polyme 82.6 0.86 2.9E-05 38.8 3.4 31 1-31 4-37 (113)
69 3iz5_m 60S ribosomal protein L 82.4 0.76 2.6E-05 37.8 2.8 31 3-34 38-68 (92)
70 3jyw_9 60S ribosomal protein L 81.6 0.94 3.2E-05 35.5 2.9 32 3-35 28-59 (72)
71 2lnb_A Z-DNA-binding protein 1 81.3 1.8 6.1E-05 34.4 4.4 45 122-166 23-67 (80)
72 2kpi_A Uncharacterized protein 81.1 0.77 2.6E-05 34.2 2.2 26 2-30 11-38 (56)
73 1nui_A DNA primase/helicase; z 80.7 0.66 2.2E-05 44.7 2.2 26 3-29 16-42 (255)
74 1twf_L ABC10-alpha, DNA-direct 80.7 0.45 1.5E-05 37.2 0.8 27 3-31 30-57 (70)
75 1ffk_W Ribosomal protein L37AE 80.6 0.61 2.1E-05 36.7 1.5 32 3-35 29-60 (73)
76 2apo_B Ribosome biogenesis pro 80.0 0.48 1.6E-05 35.9 0.7 35 1-45 6-40 (60)
77 2qdj_A Retinoblastoma-associat 79.6 8.1 0.00028 38.5 9.8 86 180-274 7-96 (304)
78 3izc_m 60S ribosomal protein R 79.5 1 3.4E-05 37.0 2.5 32 3-35 38-69 (92)
79 1twf_I B12.6, DNA-directed RNA 79.2 0.6 2.1E-05 40.3 1.2 31 1-31 4-37 (122)
80 4a17_Y RPL37A, 60S ribosomal p 78.5 0.89 3E-05 38.0 2.0 31 3-34 38-68 (103)
81 2x48_A CAG38821; archeal virus 78.4 0.78 2.7E-05 33.0 1.5 24 233-256 30-53 (55)
82 3cc2_Z 50S ribosomal protein L 77.9 0.91 3.1E-05 38.8 1.9 32 3-35 62-93 (116)
83 3qt1_I DNA-directed RNA polyme 77.8 1.2 4.2E-05 39.1 2.8 30 1-30 24-56 (133)
84 1k81_A EIF-2-beta, probable tr 76.8 0.75 2.6E-05 31.1 0.9 29 2-30 1-31 (36)
85 3i4p_A Transcriptional regulat 75.7 2.6 8.9E-05 37.5 4.5 33 230-262 13-45 (162)
86 2r7g_A PP110, retinoblastoma-a 73.7 23 0.00078 35.9 11.3 126 116-243 105-287 (347)
87 3lwf_A LIN1550 protein, putati 72.7 4.9 0.00017 36.0 5.5 48 113-160 24-71 (159)
88 1qbj_A Protein (double-strande 71.7 3.2 0.00011 33.1 3.6 29 232-260 25-53 (81)
89 3h4c_A Transcription factor TF 71.1 10 0.00035 35.5 7.3 78 179-259 19-99 (260)
90 1qgp_A Protein (double strande 71.1 2.7 9.1E-05 33.0 3.0 29 232-260 29-57 (77)
91 1dxg_A Desulforedoxin; non-hem 70.9 1.3 4.6E-05 29.8 1.0 21 3-23 8-28 (36)
92 2e1c_A Putative HTH-type trans 70.8 3.9 0.00013 36.9 4.5 31 232-262 39-69 (171)
93 2cyy_A Putative HTH-type trans 70.5 4.2 0.00014 35.5 4.5 30 232-261 19-48 (151)
94 2cg4_A Regulatory protein ASNC 70.2 4.3 0.00015 35.5 4.5 30 231-260 19-48 (152)
95 1f5q_B Gamma herpesvirus cycli 70.2 22 0.00077 34.0 10.0 85 74-162 149-241 (252)
96 3j21_g 50S ribosomal protein L 69.7 1.4 4.9E-05 32.2 1.0 22 3-29 16-37 (51)
97 1gh9_A 8.3 kDa protein (gene M 69.7 1.3 4.6E-05 34.6 0.9 27 2-31 5-31 (71)
98 1tfi_A Transcriptional elongat 69.7 1.8 6.2E-05 31.4 1.6 28 2-29 10-46 (50)
99 1uxc_A FRUR (1-57), fructose r 69.5 3.2 0.00011 31.5 3.0 23 235-257 1-23 (65)
100 2dbb_A Putative HTH-type trans 69.4 4.6 0.00016 35.2 4.5 31 231-261 20-50 (151)
101 2pn6_A ST1022, 150AA long hypo 69.3 4.7 0.00016 35.0 4.5 31 231-261 14-44 (150)
102 2cfx_A HTH-type transcriptiona 69.3 4.6 0.00016 35.0 4.4 30 232-261 17-46 (144)
103 2aus_D NOP10, ribosome biogene 68.9 1.3 4.5E-05 33.4 0.7 35 1-45 5-39 (60)
104 2p5v_A Transcriptional regulat 68.8 4.7 0.00016 35.7 4.5 30 232-261 22-51 (162)
105 1i1g_A Transcriptional regulat 68.3 5 0.00017 34.3 4.5 31 231-261 15-45 (141)
106 1jko_C HIN recombinase, DNA-in 68.2 0.92 3.1E-05 31.5 -0.3 25 235-259 22-46 (52)
107 2jpc_A SSRB; DNA binding prote 68.0 3.7 0.00013 29.8 3.1 28 233-260 12-39 (61)
108 2htj_A P fimbrial regulatory p 67.9 5.9 0.0002 30.8 4.4 28 233-260 13-40 (81)
109 2ia0_A Putative HTH-type trans 67.3 5.1 0.00018 36.1 4.5 30 232-261 29-58 (171)
110 1wii_A Hypothetical UPF0222 pr 67.0 2 7E-05 34.7 1.5 30 3-32 25-59 (85)
111 6rxn_A Rubredoxin; electron tr 66.6 1.5 5E-05 31.4 0.5 23 3-28 6-38 (46)
112 2p5k_A Arginine repressor; DNA 66.1 8.8 0.0003 27.9 4.9 28 232-259 17-49 (64)
113 1xn7_A Hypothetical protein YH 66.0 4.5 0.00015 32.0 3.3 29 232-260 14-42 (78)
114 2heo_A Z-DNA binding protein 1 65.8 6.3 0.00022 29.8 4.0 30 231-260 22-51 (67)
115 3t8r_A Staphylococcus aureus C 65.7 6.2 0.00021 34.5 4.5 45 116-160 11-55 (143)
116 3pvv_A Chromosomal replication 65.7 13 0.00043 30.9 6.2 51 111-163 28-80 (101)
117 1t6s_A Conserved hypothetical 65.7 23 0.00079 31.9 8.4 42 117-162 10-53 (162)
118 2w25_A Probable transcriptiona 65.5 6.1 0.00021 34.4 4.5 30 232-261 19-48 (150)
119 2y75_A HTH-type transcriptiona 64.4 10 0.00034 32.1 5.5 44 117-160 10-53 (129)
120 3v2d_5 50S ribosomal protein L 64.3 2 6.9E-05 32.4 0.9 22 2-29 31-52 (60)
121 1fse_A GERE; helix-turn-helix 64.3 7 0.00024 29.2 4.1 28 233-260 25-52 (74)
122 3e6c_C CPRK, cyclic nucleotide 64.2 17 0.00058 33.7 7.7 29 233-261 176-204 (250)
123 1je8_A Nitrate/nitrite respons 64.1 6.8 0.00023 30.7 4.1 28 233-260 35-62 (82)
124 2zjr_Z 50S ribosomal protein L 63.6 2.2 7.5E-05 32.2 1.0 23 2-30 31-53 (60)
125 2p7v_B Sigma-70, RNA polymeras 63.5 5.1 0.00018 30.0 3.1 28 233-260 24-51 (68)
126 2ct7_A Ring finger protein 31; 63.2 3.4 0.00012 33.1 2.2 27 3-30 27-53 (86)
127 2w48_A Sorbitol operon regulat 63.1 6.7 0.00023 38.8 4.8 35 227-261 14-48 (315)
128 1gnf_A Transcription factor GA 62.3 2.8 9.6E-05 29.9 1.3 29 2-30 5-35 (46)
129 2d1h_A ST1889, 109AA long hypo 61.7 7.4 0.00025 31.0 4.0 29 232-260 34-62 (109)
130 1q1h_A TFE, transcription fact 61.4 8.5 0.00029 31.5 4.4 30 231-260 30-59 (110)
131 1ylf_A RRF2 family protein; st 61.4 8.9 0.0003 33.6 4.8 45 115-160 13-57 (149)
132 1x3u_A Transcriptional regulat 61.3 8.4 0.00029 29.3 4.1 28 233-260 30-57 (79)
133 1l9z_H Sigma factor SIGA; heli 60.9 1.6E+02 0.0054 30.6 18.2 25 233-257 394-418 (438)
134 2pmi_B PHO85 cyclin PHO80, ami 60.5 47 0.0016 32.7 10.2 100 173-274 75-180 (293)
135 2o8x_A Probable RNA polymerase 60.1 9.9 0.00034 28.0 4.2 27 233-259 30-56 (70)
136 1ku3_A Sigma factor SIGA; heli 59.4 9.3 0.00032 28.9 4.0 26 233-258 29-54 (73)
137 1oyi_A Double-stranded RNA-bin 59.2 6.1 0.00021 31.7 2.9 26 235-260 31-56 (82)
138 2k02_A Ferrous iron transport 59.2 6.3 0.00021 31.9 3.0 29 232-260 14-42 (87)
139 3k2z_A LEXA repressor; winged 59.1 9.5 0.00032 34.9 4.7 31 230-260 20-50 (196)
140 3hug_A RNA polymerase sigma fa 58.9 9 0.00031 30.4 4.0 27 233-259 52-78 (92)
141 3jth_A Transcription activator 58.8 9 0.00031 30.5 4.0 29 233-261 35-63 (98)
142 2k9s_A Arabinose operon regula 58.7 18 0.00062 29.3 6.0 39 118-156 5-43 (107)
143 3la7_A Global nitrogen regulat 58.5 18 0.00063 33.4 6.8 30 232-261 191-220 (243)
144 3lsg_A Two-component response 58.5 22 0.00075 28.5 6.4 40 118-157 4-43 (103)
145 3dv8_A Transcriptional regulat 58.4 16 0.00055 32.8 6.2 29 233-261 168-196 (220)
146 3u50_C Telomerase-associated p 58.3 4.7 0.00016 36.8 2.4 25 3-29 44-68 (172)
147 4rxn_A Rubredoxin; electron tr 58.3 3.7 0.00012 30.3 1.3 10 22-31 5-14 (54)
148 3cng_A Nudix hydrolase; struct 58.2 5.3 0.00018 36.1 2.8 30 1-30 3-35 (189)
149 3r0a_A Putative transcriptiona 58.2 11 0.00037 31.9 4.6 38 223-260 30-68 (123)
150 1jhg_A Trp operon repressor; c 58.2 7.1 0.00024 32.5 3.3 28 232-259 56-83 (101)
151 3o9x_A Uncharacterized HTH-typ 58.1 3.5 0.00012 35.2 1.4 31 2-32 3-48 (133)
152 1tty_A Sigma-A, RNA polymerase 58.0 7.4 0.00025 30.7 3.3 28 233-260 37-64 (87)
153 2z99_A Putative uncharacterize 57.7 8.5 0.00029 36.5 4.1 43 116-162 17-59 (219)
154 3cuo_A Uncharacterized HTH-typ 57.4 9.7 0.00033 30.0 4.0 30 231-260 35-64 (99)
155 3b02_A Transcriptional regulat 57.2 14 0.00048 32.8 5.5 29 233-261 138-166 (195)
156 1zx4_A P1 PARB, plasmid partit 57.0 9.4 0.00032 35.4 4.3 29 231-259 21-49 (192)
157 2x4h_A Hypothetical protein SS 56.6 19 0.00065 30.3 6.0 31 231-261 28-58 (139)
158 2l8n_A Transcriptional repress 56.4 5 0.00017 30.6 1.9 23 234-256 9-31 (67)
159 2gau_A Transcriptional regulat 56.3 22 0.00074 32.3 6.7 30 232-261 178-207 (232)
160 4esj_A Type-2 restriction enzy 56.1 5.2 0.00018 38.4 2.3 29 2-30 35-66 (257)
161 3b73_A PHIH1 repressor-like pr 56.1 11 0.00037 31.8 4.1 30 231-261 25-56 (111)
162 2fmy_A COOA, carbon monoxide o 56.1 18 0.00063 32.6 6.2 29 233-261 166-194 (220)
163 2jt1_A PEFI protein; solution 55.9 15 0.00051 28.9 4.7 33 131-163 22-54 (77)
164 3pqk_A Biofilm growth-associat 55.7 10 0.00034 30.6 3.8 29 233-261 35-63 (102)
165 3c57_A Two component transcrip 55.1 8.9 0.0003 30.9 3.4 27 233-259 41-67 (95)
166 1j5y_A Transcriptional regulat 55.0 12 0.00042 33.9 4.7 29 232-260 34-62 (187)
167 3ulq_B Transcriptional regulat 54.9 9.1 0.00031 30.7 3.4 28 233-260 43-70 (90)
168 2vut_I AREA, nitrogen regulato 53.5 3.4 0.00012 29.0 0.5 28 2-29 2-31 (43)
169 2heo_A Z-DNA binding protein 1 53.4 18 0.00062 27.2 4.7 33 128-160 20-52 (67)
170 3la7_A Global nitrogen regulat 53.2 26 0.00088 32.4 6.8 50 131-180 191-240 (243)
171 2rnj_A Response regulator prot 53.2 8.7 0.0003 30.5 3.0 28 233-260 43-70 (91)
172 1vk6_A NADH pyrophosphatase; 1 53.1 6.9 0.00024 38.1 2.8 33 1-34 107-139 (269)
173 2w7n_A TRFB transcriptional re 53.0 17 0.00057 30.2 4.7 36 225-260 25-60 (101)
174 2pg4_A Uncharacterized protein 52.8 19 0.00064 28.5 5.0 30 231-260 27-57 (95)
175 2nnn_A Probable transcriptiona 52.8 31 0.0011 28.5 6.7 29 231-260 50-78 (140)
176 3lsg_A Two-component response 52.5 27 0.00093 27.9 6.0 48 223-275 8-55 (103)
177 1twf_I B12.6, DNA-directed RNA 51.9 9.5 0.00032 32.7 3.2 32 2-33 73-113 (122)
178 2b0l_A GTP-sensing transcripti 51.8 7.6 0.00026 32.0 2.4 29 232-260 40-69 (102)
179 3ga8_A HTH-type transcriptiona 51.6 4.7 0.00016 31.6 1.1 10 2-11 3-12 (78)
180 2kae_A GATA-type transcription 51.1 4.5 0.00015 31.6 0.9 27 3-30 10-40 (71)
181 3fx3_A Cyclic nucleotide-bindi 50.7 24 0.00083 32.1 6.1 31 231-261 175-205 (237)
182 3oou_A LIN2118 protein; protei 50.6 26 0.0009 28.3 5.7 50 219-274 7-56 (108)
183 1y0u_A Arsenical resistance op 50.6 15 0.00051 29.2 4.0 29 233-261 42-70 (96)
184 1sfx_A Conserved hypothetical 50.5 13 0.00045 29.4 3.7 28 233-260 33-60 (109)
185 4gat_A Nitrogen regulatory pro 50.4 3.5 0.00012 31.7 0.2 29 3-31 11-41 (66)
186 2l0k_A Stage III sporulation p 50.3 8.5 0.00029 31.5 2.5 23 235-257 21-43 (93)
187 3d0s_A Transcriptional regulat 50.1 26 0.0009 31.6 6.2 29 233-261 176-204 (227)
188 4ham_A LMO2241 protein; struct 49.9 9.7 0.00033 32.7 2.9 29 232-260 35-64 (134)
189 2hzt_A Putative HTH-type trans 49.9 19 0.00066 29.3 4.7 29 232-260 25-54 (107)
190 3ryp_A Catabolite gene activat 49.8 16 0.00056 32.5 4.7 29 233-261 166-194 (210)
191 2oz6_A Virulence factor regula 49.4 17 0.00057 32.3 4.6 29 233-261 163-191 (207)
192 3dfx_A Trans-acting T-cell-spe 49.4 4.1 0.00014 31.1 0.4 29 3-31 9-39 (63)
193 3k69_A Putative transcription 49.2 17 0.00057 32.5 4.5 44 117-161 13-56 (162)
194 2k9s_A Arabinose operon regula 48.8 26 0.00089 28.3 5.3 50 220-274 6-55 (107)
195 3e6c_C CPRK, cyclic nucleotide 48.5 47 0.0016 30.5 7.8 33 132-164 176-208 (250)
196 2kn9_A Rubredoxin; metalloprot 48.5 5.5 0.00019 31.9 1.0 15 19-33 26-40 (81)
197 1ovx_A ATP-dependent CLP prote 48.5 5.9 0.0002 30.6 1.1 28 1-28 18-48 (67)
198 3df8_A Possible HXLR family tr 48.1 20 0.00068 29.6 4.6 27 235-261 43-70 (111)
199 2zcw_A TTHA1359, transcription 48.1 18 0.00062 32.2 4.6 30 232-261 144-173 (202)
200 3tgn_A ADC operon repressor AD 48.0 23 0.00078 29.7 5.1 26 235-260 52-77 (146)
201 1v4r_A Transcriptional repress 47.9 5.9 0.0002 32.2 1.1 28 233-260 33-61 (102)
202 2g2k_A EIF-5, eukaryotic trans 47.9 6.5 0.00022 35.9 1.5 29 2-30 97-129 (170)
203 1uly_A Hypothetical protein PH 47.7 17 0.00058 33.4 4.4 29 233-261 32-60 (192)
204 2kko_A Possible transcriptiona 47.2 19 0.00065 29.5 4.2 28 233-260 37-64 (108)
205 1xd7_A YWNA; structural genomi 47.2 22 0.00075 30.8 4.9 45 113-160 6-50 (145)
206 2y75_A HTH-type transcriptiona 46.9 28 0.00097 29.2 5.5 30 232-261 24-53 (129)
207 3e97_A Transcriptional regulat 46.7 23 0.00079 32.1 5.2 29 233-261 174-202 (231)
208 4ich_A Transcriptional regulat 46.6 14 0.00049 35.7 3.9 37 219-256 125-162 (311)
209 1j1v_A Chromosomal replication 46.6 32 0.0011 27.9 5.4 50 111-162 24-76 (94)
210 1r1u_A CZRA, repressor protein 46.1 18 0.0006 29.4 3.9 28 233-260 38-65 (106)
211 3tqn_A Transcriptional regulat 45.8 13 0.00043 31.0 2.9 29 232-260 30-59 (113)
212 2fiy_A Protein FDHE homolog; F 45.8 11 0.00038 37.6 3.0 11 20-30 253-263 (309)
213 3kcc_A Catabolite gene activat 45.5 23 0.00079 33.2 5.1 29 233-261 216-244 (260)
214 2hr3_A Probable transcriptiona 45.4 67 0.0023 26.7 7.7 29 232-260 48-76 (147)
215 1yk4_A Rubredoxin, RD; electro 45.2 7 0.00024 28.5 1.0 12 21-32 3-14 (52)
216 2jsc_A Transcriptional regulat 44.9 21 0.00072 29.7 4.3 29 233-261 33-61 (118)
217 3neu_A LIN1836 protein; struct 44.8 16 0.00055 30.9 3.5 29 232-260 34-63 (125)
218 4e2x_A TCAB9; kijanose, tetron 44.8 6.9 0.00023 39.8 1.3 22 21-42 54-75 (416)
219 2fiy_A Protein FDHE homolog; F 44.8 8.5 0.00029 38.4 1.9 29 2-30 183-218 (309)
220 3dkw_A DNR protein; CRP-FNR, H 44.7 20 0.00069 32.3 4.5 29 232-260 176-204 (227)
221 3bro_A Transcriptional regulat 44.6 25 0.00085 29.2 4.7 28 233-260 49-76 (141)
222 1p4w_A RCSB; solution structur 44.5 15 0.00053 30.0 3.2 27 234-260 49-75 (99)
223 3nrv_A Putative transcriptiona 44.4 44 0.0015 28.0 6.3 31 230-261 51-81 (148)
224 3t72_q RNA polymerase sigma fa 44.3 16 0.00054 30.0 3.3 25 233-257 38-62 (99)
225 3oou_A LIN2118 protein; protei 44.3 36 0.0012 27.4 5.6 40 117-157 6-45 (108)
226 2zkz_A Transcriptional repress 44.3 15 0.00053 29.5 3.2 28 233-260 40-67 (99)
227 3by6_A Predicted transcription 44.1 14 0.00047 31.5 2.9 29 232-260 32-61 (126)
228 1ug2_A 2610100B20RIK gene prod 44.1 44 0.0015 27.2 5.7 41 123-163 44-86 (95)
229 3mn2_A Probable ARAC family tr 44.0 42 0.0014 27.0 5.9 49 220-274 5-53 (108)
230 3lwf_A LIN1550 protein, putati 44.0 23 0.00077 31.6 4.5 39 223-261 33-71 (159)
231 2ek5_A Predicted transcription 44.0 18 0.00062 30.9 3.8 29 232-260 25-54 (129)
232 1on2_A Transcriptional regulat 43.9 25 0.00085 29.7 4.6 28 233-260 21-48 (142)
233 1ub9_A Hypothetical protein PH 43.8 14 0.00047 29.1 2.8 28 233-260 29-56 (100)
234 1zyb_A Transcription regulator 43.8 23 0.00078 32.4 4.7 29 233-261 185-213 (232)
235 2kdx_A HYPA, hydrogenase/ureas 43.7 7.3 0.00025 33.1 1.1 8 22-29 92-99 (119)
236 3f6o_A Probable transcriptiona 43.7 18 0.00063 30.0 3.7 30 232-261 29-58 (118)
237 1s7o_A Hypothetical UPF0122 pr 43.5 15 0.0005 30.9 3.0 27 233-259 37-63 (113)
238 3bvo_A CO-chaperone protein HS 43.1 11 0.00037 35.3 2.3 28 2-31 11-38 (207)
239 1xsv_A Hypothetical UPF0122 pr 42.9 22 0.00075 29.6 4.0 27 233-259 40-66 (113)
240 2a6h_F RNA polymerase sigma fa 42.7 2.2E+02 0.0076 29.1 12.5 25 233-257 379-403 (423)
241 2ds5_A CLPX, ATP-dependent CLP 42.6 8 0.00027 28.2 1.0 26 1-26 11-39 (51)
242 2elh_A CG11849-PA, LD40883P; s 42.6 15 0.00052 28.9 2.8 25 235-259 39-63 (87)
243 2f2e_A PA1607; transcription f 42.2 27 0.00091 30.4 4.6 29 233-261 36-64 (146)
244 1dx8_A Rubredoxin; electron tr 42.2 8.6 0.00029 29.8 1.2 7 22-28 42-48 (70)
245 2jn6_A Protein CGL2762, transp 42.0 24 0.00082 28.0 4.0 27 234-260 23-49 (97)
246 3h0g_L DNA-directed RNA polyme 42.0 12 0.0004 28.5 1.9 24 3-28 23-46 (63)
247 2zcm_A Biofilm operon icaabcd 41.9 32 0.0011 29.9 5.2 43 213-256 6-49 (192)
248 2fmy_A COOA, carbon monoxide o 41.8 49 0.0017 29.6 6.6 34 132-165 166-199 (220)
249 1l1o_C Replication protein A 7 41.7 12 0.00041 34.1 2.4 28 3-32 45-74 (181)
250 3iwz_A CAP-like, catabolite ac 41.4 26 0.00088 31.6 4.6 28 233-260 186-213 (230)
251 3b02_A Transcriptional regulat 41.3 39 0.0013 29.8 5.8 33 132-164 138-170 (195)
252 2v3b_B Rubredoxin 2, rubredoxi 41.3 8.7 0.0003 28.3 1.1 12 21-32 4-15 (55)
253 2lfw_A PHYR sigma-like domain; 41.2 16 0.00054 31.8 3.0 27 233-259 108-134 (157)
254 3mzy_A RNA polymerase sigma-H 41.2 17 0.00057 31.0 3.1 27 233-259 123-149 (164)
255 1neq_A DNA-binding protein NER 40.9 23 0.00079 27.2 3.6 24 232-255 20-43 (74)
256 3h5t_A Transcriptional regulat 40.6 14 0.0005 36.3 2.9 45 232-278 7-51 (366)
257 2jpc_A SSRB; DNA binding prote 40.6 28 0.00095 24.8 3.8 32 133-164 13-44 (61)
258 4ell_A Retinoblastoma-associat 40.5 54 0.0018 33.9 7.2 64 180-244 287-352 (411)
259 4a5n_A Uncharacterized HTH-typ 40.4 33 0.0011 29.6 4.8 29 232-260 37-66 (131)
260 2hsg_A Glucose-resistance amyl 40.3 13 0.00046 35.9 2.6 24 234-257 2-25 (332)
261 2lkp_A Transcriptional regulat 40.2 33 0.0011 28.1 4.7 28 233-260 44-71 (119)
262 1vzi_A Desulfoferrodoxin; ferr 40.2 8.5 0.00029 33.2 1.0 27 3-31 9-35 (126)
263 2oqg_A Possible transcriptiona 40.1 20 0.00067 29.1 3.2 28 233-260 33-60 (114)
264 3t8r_A Staphylococcus aureus C 39.9 20 0.0007 31.1 3.5 39 223-261 17-55 (143)
265 2qwt_A Transcriptional regulat 39.9 27 0.00093 30.7 4.4 37 219-256 18-54 (196)
266 3mkl_A HTH-type transcriptiona 39.8 27 0.00091 28.9 4.1 51 218-275 8-58 (120)
267 2bgc_A PRFA; bacterial infecti 39.7 41 0.0014 30.8 5.8 30 232-261 166-197 (238)
268 3oio_A Transcriptional regulat 39.4 42 0.0014 27.2 5.3 49 220-274 10-58 (113)
269 1j9i_A GPNU1 DBD;, terminase s 39.4 13 0.00046 27.8 1.9 23 235-257 3-25 (68)
270 3dv8_A Transcriptional regulat 39.3 54 0.0018 29.2 6.5 48 117-164 150-200 (220)
271 1rzs_A Antirepressor, regulato 39.3 17 0.00057 26.8 2.4 21 235-255 11-31 (61)
272 1bl0_A Protein (multiple antib 39.2 44 0.0015 28.0 5.4 101 116-274 11-112 (129)
273 3mn2_A Probable ARAC family tr 39.2 55 0.0019 26.2 5.9 38 118-156 4-41 (108)
274 2kao_A Methionine-R-sulfoxide 39.1 18 0.00063 31.1 2.9 31 1-31 1-31 (124)
275 3bpv_A Transcriptional regulat 39.1 30 0.001 28.6 4.4 29 232-260 41-69 (138)
276 1ku9_A Hypothetical protein MJ 39.0 34 0.0012 28.5 4.8 30 231-260 38-67 (152)
277 1r1t_A Transcriptional repress 38.8 36 0.0012 28.6 4.8 28 233-260 58-85 (122)
278 1u2w_A CADC repressor, cadmium 38.7 25 0.00087 29.4 3.8 29 232-260 54-82 (122)
279 1u78_A TC3 transposase, transp 38.5 41 0.0014 28.0 5.2 28 234-261 22-49 (141)
280 1pdn_C Protein (PRD paired); p 38.5 23 0.00078 28.8 3.4 28 234-261 33-60 (128)
281 2gau_A Transcriptional regulat 38.4 62 0.0021 29.1 6.8 34 131-164 178-211 (232)
282 1ft9_A Carbon monoxide oxidati 38.2 20 0.0007 32.4 3.4 29 233-261 162-190 (222)
283 1z4h_A TORI, TOR inhibition pr 38.1 21 0.00073 26.6 2.9 23 235-257 11-33 (66)
284 3p2a_A Thioredoxin 2, putative 37.9 9.6 0.00033 32.4 1.0 34 1-34 5-39 (148)
285 3fm5_A Transcriptional regulat 37.3 68 0.0023 26.9 6.5 30 231-260 51-80 (150)
286 2fu4_A Ferric uptake regulatio 37.2 31 0.0011 26.4 3.8 28 233-260 32-64 (83)
287 3mky_B Protein SOPB; partition 37.1 32 0.0011 31.8 4.4 35 225-259 33-67 (189)
288 2qvo_A Uncharacterized protein 36.9 41 0.0014 26.5 4.6 29 232-260 28-56 (95)
289 3kkc_A TETR family transcripti 36.9 20 0.00068 30.6 2.9 37 219-256 17-54 (177)
290 1zyb_A Transcription regulator 36.9 68 0.0023 29.1 6.8 32 132-163 185-216 (232)
291 2p7v_B Sigma-70, RNA polymeras 36.8 39 0.0013 24.8 4.2 33 132-164 24-56 (68)
292 2a6c_A Helix-turn-helix motif; 36.7 63 0.0022 24.6 5.6 43 230-276 27-69 (83)
293 1qpz_A PURA, protein (purine n 36.6 19 0.00064 35.1 3.0 22 235-256 1-22 (340)
294 2jmo_A Parkin; IBR, E3 ligase, 36.3 20 0.00069 28.1 2.5 29 1-30 25-60 (80)
295 2oz6_A Virulence factor regula 36.2 40 0.0014 29.7 5.0 30 132-161 163-192 (207)
296 3omt_A Uncharacterized protein 36.1 21 0.00072 26.4 2.6 40 233-277 20-59 (73)
297 3ulq_B Transcriptional regulat 36.0 38 0.0013 26.9 4.3 32 133-164 44-75 (90)
298 2xi8_A Putative transcription 36.0 24 0.00081 25.1 2.8 39 233-276 13-51 (66)
299 3kjx_A Transcriptional regulat 35.9 15 0.00052 35.8 2.2 44 233-278 9-52 (344)
300 3deu_A Transcriptional regulat 35.8 78 0.0027 27.4 6.8 30 231-260 65-94 (166)
301 3kz3_A Repressor protein CI; f 35.8 56 0.0019 24.6 5.1 42 132-187 24-65 (80)
302 3kz3_A Repressor protein CI; f 35.7 21 0.00073 27.1 2.6 39 233-276 24-62 (80)
303 1z7u_A Hypothetical protein EF 35.4 31 0.0011 28.3 3.8 28 233-260 34-62 (112)
304 3dkw_A DNR protein; CRP-FNR, H 35.4 54 0.0018 29.3 5.8 34 131-164 176-209 (227)
305 1jgs_A Multiple antibiotic res 35.4 1E+02 0.0035 25.2 7.2 28 233-260 47-74 (138)
306 2r1j_L Repressor protein C2; p 35.4 23 0.00077 25.5 2.6 39 233-276 17-55 (68)
307 3frw_A Putative Trp repressor 35.2 34 0.0012 28.7 3.9 31 230-260 54-84 (107)
308 2q24_A Putative TETR family tr 35.0 36 0.0012 29.7 4.4 38 218-256 19-56 (194)
309 2hku_A A putative transcriptio 35.0 45 0.0016 29.5 5.2 40 216-256 22-61 (215)
310 2v7f_A RPS19, RPS19E SSU ribos 34.9 46 0.0016 29.4 5.0 40 220-260 54-107 (150)
311 1r69_A Repressor protein CI; g 34.7 25 0.00087 25.3 2.8 26 232-257 12-37 (69)
312 1fse_A GERE; helix-turn-helix 34.6 61 0.0021 23.7 5.1 32 133-164 26-57 (74)
313 3eco_A MEPR; mutlidrug efflux 34.3 36 0.0012 28.2 4.1 28 233-260 46-73 (139)
314 1ntc_A Protein (nitrogen regul 34.2 31 0.0011 27.5 3.4 29 229-259 61-89 (91)
315 3fx3_A Cyclic nucleotide-bindi 34.2 51 0.0018 29.8 5.5 30 131-160 176-205 (237)
316 3g3z_A NMB1585, transcriptiona 34.1 1.3E+02 0.0044 24.9 7.7 27 234-260 45-71 (145)
317 3ryp_A Catabolite gene activat 34.1 46 0.0016 29.4 5.0 30 132-161 166-195 (210)
318 3fmy_A HTH-type transcriptiona 34.0 18 0.00061 27.3 1.9 25 232-256 22-46 (73)
319 2eth_A Transcriptional regulat 34.0 41 0.0014 28.6 4.5 27 234-260 58-84 (154)
320 3ivp_A Putative transposon-rel 33.9 1.5E+02 0.0051 24.3 8.0 74 133-207 25-111 (126)
321 2fbh_A Transcriptional regulat 33.8 43 0.0015 27.8 4.5 30 231-260 49-78 (146)
322 1yyv_A Putative transcriptiona 33.7 34 0.0012 29.1 3.9 29 232-260 46-75 (131)
323 2nyx_A Probable transcriptiona 33.7 55 0.0019 28.3 5.4 27 234-260 59-85 (168)
324 1zug_A Phage 434 CRO protein; 33.7 27 0.00092 25.3 2.8 26 232-257 14-39 (71)
325 3lfp_A CSP231I C protein; tran 33.6 70 0.0024 25.1 5.6 45 234-279 14-58 (98)
326 2gxg_A 146AA long hypothetical 33.6 41 0.0014 28.0 4.4 29 232-260 48-76 (146)
327 1rp3_A RNA polymerase sigma fa 33.4 2.6E+02 0.0088 24.9 15.1 27 232-258 201-227 (239)
328 3bro_A Transcriptional regulat 33.4 1.2E+02 0.0041 24.8 7.3 42 122-163 39-80 (141)
329 2zcw_A TTHA1359, transcription 33.3 48 0.0016 29.3 5.0 33 132-164 145-177 (202)
330 3bj6_A Transcriptional regulat 33.3 37 0.0013 28.5 4.1 28 233-260 53-80 (152)
331 1qbj_A Protein (double-strande 33.1 46 0.0016 26.2 4.2 33 131-163 25-57 (81)
332 2b5a_A C.BCLI; helix-turn-heli 33.1 27 0.00093 25.8 2.8 40 232-276 21-60 (77)
333 1or7_A Sigma-24, RNA polymeras 33.0 36 0.0012 30.0 4.1 27 233-259 155-181 (194)
334 1ylf_A RRF2 family protein; st 33.0 44 0.0015 29.0 4.6 38 223-261 20-57 (149)
335 2k9q_A Uncharacterized protein 32.8 25 0.00087 26.3 2.6 39 233-276 14-52 (77)
336 2nnn_A Probable transcriptiona 32.8 1.6E+02 0.0054 23.9 8.0 32 133-164 52-83 (140)
337 4ev0_A Transcription regulator 32.8 25 0.00085 31.4 3.0 29 233-261 162-190 (216)
338 1bia_A BIRA bifunctional prote 32.8 36 0.0012 33.7 4.4 31 231-261 16-46 (321)
339 3oio_A Transcriptional regulat 32.8 68 0.0023 25.9 5.5 40 117-157 8-47 (113)
340 2fsw_A PG_0823 protein; alpha- 32.8 42 0.0014 27.2 4.1 29 232-260 36-65 (107)
341 2rdp_A Putative transcriptiona 32.7 1.1E+02 0.0036 25.5 6.9 28 233-260 55-82 (150)
342 3b7h_A Prophage LP1 protein 11 32.7 30 0.001 25.7 3.0 41 232-276 18-58 (78)
343 3bdd_A Regulatory protein MARR 32.6 35 0.0012 28.2 3.7 28 233-260 44-71 (142)
344 3mkl_A HTH-type transcriptiona 32.6 47 0.0016 27.3 4.5 39 117-156 8-46 (120)
345 2pij_A Prophage PFL 6 CRO; tra 32.5 51 0.0018 23.8 4.2 21 236-256 15-35 (67)
346 1z91_A Organic hydroperoxide r 32.4 62 0.0021 26.9 5.3 27 234-260 54-80 (147)
347 1l3l_A Transcriptional activat 32.3 36 0.0012 31.6 4.1 28 233-260 187-214 (234)
348 3ech_A MEXR, multidrug resista 32.1 68 0.0023 26.7 5.5 28 233-260 50-77 (142)
349 1tty_A Sigma-A, RNA polymerase 32.1 55 0.0019 25.5 4.6 32 132-163 37-68 (87)
350 3a43_A HYPD, hydrogenase nicke 32.0 9.7 0.00033 33.4 0.0 14 17-30 67-80 (139)
351 3qkx_A Uncharacterized HTH-typ 32.0 42 0.0014 28.6 4.2 37 219-256 13-50 (188)
352 3e7l_A Transcriptional regulat 32.0 57 0.0019 23.9 4.4 24 236-259 34-57 (63)
353 4a0z_A Transcription factor FA 31.9 52 0.0018 30.1 5.0 30 232-261 24-53 (190)
354 1ku3_A Sigma factor SIGA; heli 31.9 55 0.0019 24.4 4.4 31 132-162 29-59 (73)
355 2kpj_A SOS-response transcript 31.8 40 0.0014 26.4 3.7 42 230-276 18-59 (94)
356 3bqz_B HTH-type transcriptiona 31.6 50 0.0017 28.3 4.8 38 219-257 7-45 (194)
357 1tbx_A ORF F-93, hypothetical 31.6 45 0.0015 26.2 4.1 29 232-260 20-52 (99)
358 2fa5_A Transcriptional regulat 31.5 46 0.0016 28.4 4.4 30 232-261 61-90 (162)
359 1qgp_A Protein (double strande 31.5 68 0.0023 24.7 4.9 34 130-163 28-61 (77)
360 1j1v_A Chromosomal replication 31.5 1.3E+02 0.0043 24.2 6.7 47 212-260 23-73 (94)
361 1adr_A P22 C2 repressor; trans 31.5 28 0.00095 25.6 2.6 39 233-276 17-55 (76)
362 3e97_A Transcriptional regulat 31.4 90 0.0031 28.0 6.7 49 116-164 150-206 (231)
363 2zkr_2 60S ribosomal protein L 31.4 18 0.00062 29.8 1.5 22 3-28 18-39 (97)
364 3cjn_A Transcriptional regulat 31.3 39 0.0013 28.9 3.9 29 232-260 64-92 (162)
365 1y7y_A C.AHDI; helix-turn-heli 31.3 31 0.0011 25.2 2.8 40 232-276 24-63 (74)
366 3knw_A Putative transcriptiona 31.2 46 0.0016 29.0 4.5 39 217-256 17-56 (212)
367 3t76_A VANU, transcriptional r 31.1 27 0.00094 27.7 2.6 40 233-278 36-75 (88)
368 2qc0_A Uncharacterized protein 31.1 2.7E+02 0.0091 27.9 10.7 151 92-260 184-337 (373)
369 3kor_A Possible Trp repressor; 31.1 33 0.0011 29.3 3.2 27 234-260 75-101 (119)
370 1x3u_A Transcriptional regulat 31.1 71 0.0024 23.8 5.0 33 132-164 30-62 (79)
371 1d0q_A DNA primase; zinc-bindi 31.0 22 0.00076 29.2 2.1 26 3-28 39-66 (103)
372 2a61_A Transcriptional regulat 30.7 39 0.0013 28.1 3.7 28 233-260 46-73 (145)
373 2olm_A Nucleoporin-like protei 30.7 14 0.00047 32.6 0.7 29 3-31 27-56 (140)
374 3qq6_A HTH-type transcriptiona 30.7 29 0.00099 26.4 2.6 40 233-276 22-61 (78)
375 1k78_A Paired box protein PAX5 30.4 39 0.0013 28.8 3.7 28 234-261 48-75 (149)
376 1je8_A Nitrate/nitrite respons 30.4 72 0.0025 24.5 5.0 32 133-164 36-67 (82)
377 2iqj_A Stromal membrane-associ 30.4 13 0.00044 32.5 0.5 28 3-30 29-57 (134)
378 3r0a_A Putative transcriptiona 30.3 63 0.0021 27.0 4.9 38 123-160 31-69 (123)
379 1bl0_A Protein (multiple antib 30.1 60 0.002 27.1 4.8 50 219-274 13-62 (129)
380 3q87_A Putative uncharacterize 30.0 10 0.00034 32.9 -0.2 16 15-30 94-109 (125)
381 1s3j_A YUSO protein; structura 30.0 55 0.0019 27.6 4.6 28 233-260 50-77 (155)
382 1zs4_A Regulatory protein CII; 29.8 32 0.0011 27.6 2.7 24 235-258 25-48 (83)
383 3lwj_A Putative TETR-family tr 29.8 51 0.0018 28.5 4.5 37 219-256 17-54 (202)
384 2o20_A Catabolite control prot 29.8 11 0.00038 36.6 0.0 26 233-258 4-29 (332)
385 3ppb_A Putative TETR family tr 29.7 49 0.0017 28.2 4.3 39 218-257 13-52 (195)
386 2qtq_A Transcriptional regulat 29.7 65 0.0022 28.0 5.2 39 218-257 20-59 (213)
387 3f1b_A TETR-like transcription 29.7 52 0.0018 28.4 4.5 37 219-256 19-56 (203)
388 1jhf_A LEXA repressor; LEXA SO 29.6 61 0.0021 29.2 5.1 32 229-260 20-52 (202)
389 2owa_A Arfgap-like finger doma 29.6 14 0.00047 32.5 0.5 28 3-30 38-66 (138)
390 2pex_A Transcriptional regulat 29.5 44 0.0015 28.3 3.9 29 232-260 59-87 (153)
391 1o5l_A Transcriptional regulat 29.5 18 0.0006 32.7 1.3 30 232-261 162-191 (213)
392 1lj9_A Transcriptional regulat 29.4 47 0.0016 27.6 4.0 28 233-260 42-69 (144)
393 3d0s_A Transcriptional regulat 29.3 91 0.0031 27.9 6.3 33 132-164 176-208 (227)
394 2fbi_A Probable transcriptiona 29.3 36 0.0012 28.2 3.2 28 233-260 49-76 (142)
395 3c7j_A Transcriptional regulat 29.3 38 0.0013 31.8 3.7 29 232-260 47-75 (237)
396 2h09_A Transcriptional regulat 29.1 42 0.0014 28.8 3.7 29 233-261 53-81 (155)
397 2cw1_A SN4M; lambda CRO fold, 29.1 37 0.0013 25.7 2.8 22 236-257 15-36 (65)
398 3s8q_A R-M controller protein; 29.1 32 0.0011 26.0 2.6 40 232-276 22-61 (82)
399 3f6w_A XRE-family like protein 29.0 32 0.0011 26.0 2.6 39 233-276 26-64 (83)
400 3kcc_A Catabolite gene activat 28.9 82 0.0028 29.2 6.0 32 132-163 216-247 (260)
401 3f6v_A Possible transcriptiona 28.7 41 0.0014 29.5 3.6 30 232-261 69-98 (151)
402 1umq_A Photosynthetic apparatu 28.7 38 0.0013 26.8 3.0 23 236-258 56-78 (81)
403 2p57_A GTPase-activating prote 28.7 12 0.00043 33.1 0.1 28 3-30 39-67 (144)
404 1u8b_A ADA polyprotein; protei 28.7 64 0.0022 27.0 4.7 38 232-274 91-128 (133)
405 3cdh_A Transcriptional regulat 28.6 53 0.0018 27.8 4.3 29 232-260 55-83 (155)
406 3bd1_A CRO protein; transcript 28.5 37 0.0013 25.6 2.9 22 236-257 13-34 (79)
407 2vn2_A DNAD, chromosome replic 28.5 1E+02 0.0035 25.9 6.0 26 235-260 52-77 (128)
408 2ef8_A C.ECOT38IS, putative tr 28.4 33 0.0011 25.8 2.6 25 232-256 21-45 (84)
409 2q0o_A Probable transcriptiona 28.4 36 0.0012 31.6 3.4 28 233-260 189-216 (236)
410 3c57_A Two component transcrip 28.3 60 0.0021 25.8 4.3 31 134-164 43-73 (95)
411 3bs3_A Putative DNA-binding pr 28.3 37 0.0013 25.0 2.8 39 233-276 22-60 (76)
412 2qww_A Transcriptional regulat 28.3 46 0.0016 28.1 3.8 28 233-260 54-81 (154)
413 4fx0_A Probable transcriptiona 28.3 72 0.0024 27.3 5.1 28 233-260 51-78 (148)
414 2l1p_A DNA-binding protein SAT 28.2 33 0.0011 27.4 2.5 23 234-256 32-54 (83)
415 2bgc_A PRFA; bacterial infecti 28.1 94 0.0032 28.2 6.2 33 132-164 167-201 (238)
416 2dk5_A DNA-directed RNA polyme 28.0 57 0.002 26.2 4.0 29 232-260 34-62 (91)
417 3q0w_A HTH-type transcriptiona 28.0 45 0.0015 30.2 3.9 37 219-256 49-86 (236)
418 3vp5_A Transcriptional regulat 27.9 52 0.0018 28.7 4.2 39 217-256 15-54 (189)
419 3iwz_A CAP-like, catabolite ac 27.8 66 0.0023 28.8 5.0 32 132-163 186-217 (230)
420 3eus_A DNA-binding protein; st 27.8 34 0.0012 26.4 2.6 40 232-276 25-64 (86)
421 2wiu_B HTH-type transcriptiona 27.7 45 0.0015 25.3 3.3 40 232-276 23-62 (88)
422 2htj_A P fimbrial regulatory p 27.7 1.1E+02 0.0036 23.3 5.5 29 132-160 13-41 (81)
423 2crr_A Stromal membrane-associ 27.6 15 0.00053 32.3 0.5 28 3-30 31-59 (141)
424 1ft9_A Carbon monoxide oxidati 27.6 51 0.0018 29.6 4.2 33 132-164 162-194 (222)
425 4hc9_A Trans-acting T-cell-spe 27.6 16 0.00054 31.1 0.6 30 2-31 6-37 (115)
426 2o8x_A Probable RNA polymerase 27.5 67 0.0023 23.2 4.1 30 133-162 31-60 (70)
427 2ewt_A BLDD, putative DNA-bind 27.5 37 0.0012 24.7 2.6 40 232-276 19-60 (71)
428 4gop_C Putative uncharacterize 27.3 28 0.00097 36.0 2.6 28 3-32 310-339 (444)
429 1g2h_A Transcriptional regulat 27.3 41 0.0014 24.7 2.8 23 236-258 35-57 (61)
430 2lk0_A RNA-binding protein 5; 27.3 25 0.00084 22.8 1.3 12 18-29 3-14 (32)
431 1pb6_A Hypothetical transcript 27.2 62 0.0021 28.2 4.6 38 219-257 23-61 (212)
432 3hug_A RNA polymerase sigma fa 27.2 63 0.0021 25.3 4.1 29 134-162 54-82 (92)
433 2v57_A TETR family transcripti 27.1 36 0.0012 29.3 2.9 37 219-257 19-55 (190)
434 1xmk_A Double-stranded RNA-spe 27.1 59 0.002 25.6 3.8 27 234-260 25-52 (79)
435 1t33_A Putative transcriptiona 27.0 65 0.0022 28.4 4.8 38 219-257 17-54 (224)
436 4hbl_A Transcriptional regulat 27.0 51 0.0017 27.9 3.8 29 232-260 53-81 (149)
437 3h5o_A Transcriptional regulat 27.0 13 0.00046 36.1 0.0 41 234-276 4-44 (339)
438 3lhq_A Acrab operon repressor 26.9 61 0.0021 28.2 4.5 38 219-257 19-57 (220)
439 2g7s_A Transcriptional regulat 26.9 48 0.0016 28.3 3.7 38 219-257 13-51 (194)
440 3s2w_A Transcriptional regulat 26.8 52 0.0018 28.1 3.9 29 232-260 62-90 (159)
441 1p4w_A RCSB; solution structur 26.7 66 0.0023 26.0 4.3 32 133-164 49-80 (99)
442 2o3f_A Putative HTH-type trans 26.7 45 0.0015 27.7 3.3 26 234-259 39-64 (111)
443 3bja_A Transcriptional regulat 26.7 32 0.0011 28.4 2.4 29 232-260 45-73 (139)
444 4ghj_A Probable transcriptiona 26.6 36 0.0012 27.9 2.6 38 232-276 47-84 (101)
445 3col_A Putative transcription 26.6 50 0.0017 28.2 3.8 39 217-256 13-52 (196)
446 2hin_A GP39, repressor protein 26.6 44 0.0015 25.7 2.9 22 236-257 12-33 (71)
447 1x57_A Endothelial differentia 26.6 63 0.0022 24.9 4.0 42 231-277 23-64 (91)
448 2frh_A SARA, staphylococcal ac 26.5 44 0.0015 27.8 3.2 28 233-260 52-79 (127)
449 3dcf_A Transcriptional regulat 26.5 59 0.002 28.4 4.3 37 219-256 36-73 (218)
450 3nrv_A Putative transcriptiona 26.4 1.8E+02 0.0063 23.9 7.3 31 129-160 51-81 (148)
451 1u8b_A ADA polyprotein; protei 26.4 54 0.0018 27.5 3.8 27 131-157 91-117 (133)
452 2ict_A Antitoxin HIGA; helix-t 26.3 45 0.0015 26.0 3.1 39 233-276 20-58 (94)
453 3rd3_A Probable transcriptiona 26.2 67 0.0023 27.5 4.6 40 216-256 12-52 (197)
454 3szt_A QCSR, quorum-sensing co 26.2 42 0.0014 31.3 3.4 28 233-260 189-216 (237)
455 2iu5_A DHAS, YCEG, HTH-type dh 26.0 35 0.0012 29.8 2.7 41 215-256 14-55 (195)
456 3edp_A LIN2111 protein; APC883 26.0 43 0.0015 31.4 3.4 29 232-260 30-59 (236)
457 3kz9_A SMCR; transcriptional r 26.0 60 0.002 28.0 4.2 37 219-256 22-59 (206)
458 2rae_A Transcriptional regulat 25.9 75 0.0025 27.6 4.9 40 217-257 20-60 (207)
459 1u78_A TC3 transposase, transp 25.7 1.1E+02 0.0036 25.3 5.6 70 78-155 25-101 (141)
460 3k0l_A Repressor protein; heli 25.7 1E+02 0.0034 26.3 5.6 28 233-260 59-86 (162)
461 2glo_A Brinker CG9653-PA; prot 25.5 38 0.0013 24.4 2.3 23 237-259 28-50 (59)
462 2gqq_A Leucine-responsive regu 25.5 13 0.00044 32.8 -0.4 32 230-261 23-54 (163)
463 2ppx_A AGR_C_3184P, uncharacte 25.5 39 0.0013 26.8 2.6 24 233-256 42-65 (99)
464 2l8n_A Transcriptional repress 25.4 34 0.0012 25.8 2.1 22 132-153 8-29 (67)
465 1lmb_3 Protein (lambda repress 25.4 40 0.0014 26.0 2.6 39 233-276 29-67 (92)
466 3hrs_A Metalloregulator SCAR; 25.4 41 0.0014 31.1 3.1 30 232-261 18-47 (214)
467 2crw_A ARF GAP 3, ADP-ribosyla 25.4 16 0.00056 32.5 0.3 27 3-29 31-58 (149)
468 3b81_A Transcriptional regulat 25.3 70 0.0024 27.6 4.6 38 218-256 15-53 (203)
469 3bwg_A Uncharacterized HTH-typ 25.3 47 0.0016 31.2 3.5 29 232-260 26-55 (239)
470 3jw4_A Transcriptional regulat 25.3 46 0.0016 28.0 3.2 28 233-260 56-83 (148)
471 3eco_A MEPR; mutlidrug efflux 25.2 1.7E+02 0.0057 23.9 6.8 41 123-163 37-77 (139)
472 1z6r_A MLC protein; transcript 25.2 65 0.0022 32.4 4.8 31 230-260 26-56 (406)
473 3nqo_A MARR-family transcripti 25.1 55 0.0019 29.2 3.9 29 232-260 55-83 (189)
474 1stz_A Heat-inducible transcri 25.1 45 0.0015 33.4 3.5 30 231-260 33-64 (338)
475 2fq4_A Transcriptional regulat 25.1 70 0.0024 27.7 4.5 37 219-256 17-54 (192)
476 4ev0_A Transcription regulator 25.1 73 0.0025 28.2 4.7 33 132-164 162-194 (216)
477 1hw1_A FADR, fatty acid metabo 25.0 50 0.0017 30.5 3.6 29 232-260 28-57 (239)
478 4ffb_C Protein STU2; tubulin f 25.0 4.2E+02 0.014 24.6 10.5 140 64-207 65-212 (278)
479 3nxc_A HTH-type protein SLMA; 25.0 46 0.0016 29.0 3.3 41 216-256 26-67 (212)
480 3ic7_A Putative transcriptiona 25.0 14 0.00048 31.4 -0.2 29 232-260 32-61 (126)
481 3u2r_A Regulatory protein MARR 24.9 1.2E+02 0.004 26.0 6.0 66 193-260 23-88 (168)
482 3dew_A Transcriptional regulat 24.9 55 0.0019 28.1 3.8 39 218-257 12-51 (206)
483 1t6s_A Conserved hypothetical 24.9 56 0.0019 29.3 3.8 38 218-259 10-49 (162)
484 3vpr_A Transcriptional regulat 24.8 92 0.0032 26.7 5.2 37 219-256 8-45 (190)
485 3op9_A PLI0006 protein; struct 24.7 2.1E+02 0.0072 22.8 7.1 72 134-207 23-110 (114)
486 2yve_A Transcriptional regulat 24.7 64 0.0022 27.9 4.2 39 218-257 8-47 (185)
487 1eto_A FIS, factor for inversi 24.7 60 0.0021 26.4 3.6 23 236-258 73-95 (98)
488 1b4a_A Arginine repressor; hel 24.7 46 0.0016 29.4 3.1 31 232-262 17-52 (149)
489 1u5k_A Hypothetical protein; O 24.6 32 0.0011 32.4 2.2 26 3-28 152-178 (244)
490 3dpj_A Transcription regulator 24.6 73 0.0025 27.3 4.5 37 219-256 13-50 (194)
491 3uj3_X DNA-invertase; helix-tu 24.6 16 0.00054 33.2 0.0 52 208-260 133-184 (193)
492 3on4_A Transcriptional regulat 24.6 56 0.0019 27.8 3.7 38 218-256 14-52 (191)
493 2xzm_9 RPS31E; ribosome, trans 24.5 31 0.0011 31.8 2.0 27 3-30 115-141 (189)
494 2d6y_A Putative TETR family re 24.5 93 0.0032 27.3 5.3 38 218-256 12-50 (202)
495 3c2b_A Transcriptional regulat 24.4 70 0.0024 28.1 4.5 38 219-257 20-58 (221)
496 3jsj_A Putative TETR-family tr 24.4 61 0.0021 27.8 3.9 38 218-256 13-50 (190)
497 2rnj_A Response regulator prot 24.3 56 0.0019 25.6 3.3 32 133-164 44-75 (91)
498 2lr8_A CAsp8-associated protei 30.1 16 0.00055 28.2 0.0 40 123-162 25-65 (70)
499 3oop_A LIN2960 protein; protei 24.2 49 0.0017 27.6 3.1 28 233-260 50-77 (143)
500 3gzi_A Transcriptional regulat 24.2 67 0.0023 28.1 4.2 37 219-255 22-58 (218)
No 1
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=100.00 E-value=2e-55 Score=453.75 Aligned_cols=266 Identities=15% Similarity=0.258 Sum_probs=136.9
Q ss_pred CCCCCCCC--CCcccccCCCceecCcCceeeccCcccccccccccC------CCCccccCc--------ccc--------
Q 010689 2 VWCSSCAR--HVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNA------AGQSQLSGN--------FVR-------- 57 (504)
Q Consensus 2 ~~Cp~Cgs--~~iv~D~~~G~~VC~~CG~Vlee~~id~~~~f~~~~------~G~s~v~G~--------~v~-------- 57 (504)
..||.||+ ..+++|+.+|++||++||.||+|++||.+++|+.++ ..++|+++. -++
T Consensus 22 ~~Cp~C~~~~~~lv~D~~~G~~vC~~CGlVl~e~~iD~g~EWR~f~~d~~~~~d~sRvG~~~~~~~~~~glsT~I~~~~~ 101 (345)
T 4bbr_M 22 LTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGET 101 (345)
T ss_dssp CCCSSCCCSSCCEEEEGGGTEEEETTTCBEEESCCBCHHHHHTTTSCSCSSSCCSSCCEEEECHHHHCSCCCCEEECCSS
T ss_pred CcCCCCCCCCCceeEECCCCcEEeCCCCCCccCcccccCccccCCCcccccCCCcCCCCCCCCccccCCCcceeecCCCC
Confidence 37999997 578899999999999999999999999887776432 123454321 111
Q ss_pred ----------ccccc-ccChHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHH
Q 010689 58 ----------TIQSE-YGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126 (504)
Q Consensus 58 ----------~~~~~-~~~srer~L~~a~~~I~~i~~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiA 126 (504)
.||.+ ..+++||+|.+|+..|.++|++|+|| ++++++|..||++++++++++||+.+.++|||||+|
T Consensus 102 ~~~~~~~~L~r~q~r~~~~~~er~L~~a~~~I~~~~~~L~Lp--~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiA 179 (345)
T 4bbr_M 102 TDMRFTKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAELP--KIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIG 179 (345)
T ss_dssp CCHHHHHHHHHHHHHTCCCCSSSSTTHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHH
Confidence 12211 24678899999999999999999999 999999999999999999999999999999999999
Q ss_pred HHhcCCCCcHHHHHHHhCcChHHHHHHHHHHHHHhccccccc-------ccccCCccchHHHHHHhhCCCCCHHHHHHHH
Q 010689 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESN-------VLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 199 (504)
Q Consensus 127 CR~~~~p~tL~dIs~~~~vs~~~Lg~~~~~L~~~L~i~~~~~-------~~~~~dP~~~I~r~~~~L~~~l~~~V~~~A~ 199 (504)
||++++|+||+||+++++|++++|+++|+.|.+.|++....+ ..+.+||+.||+|||+.|+ ++++|.+.|+
T Consensus 180 CR~~~~prtl~eI~~~~~v~~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~--l~~~v~~~A~ 257 (345)
T 4bbr_M 180 CRRAEVARTFKEIQSLIHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLG--LPMQVTTSAE 257 (345)
T ss_dssp HHHTCCBCCHHHHHHHHTCCTTHHHHHHHHHHHCC---------------------------------------------
T ss_pred HHhcCCCccHHHHHHHhCCCHHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcC--CcHHHHHHHH
Confidence 999999999999999999999999999999999999752110 0234899999999999998 7899999999
Q ss_pred HHHHHhcccccccCCChhHHHHHHHHHHHHhcCCCCCHhhHHhhhccCHHHHHHHHHHhhccCCCCCChHHHH
Q 010689 200 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 272 (504)
Q Consensus 200 ~I~~~~~~~~l~~GR~P~~IAAAalylAa~~~g~~~t~keIa~v~~Vse~TIrkr~kE~~~t~~~~lt~~~~~ 272 (504)
+|++.|.++|+++||+|.+|||||||+|++++|+++|+++|++++|||++|||+||+||.+... .|...+|.
T Consensus 258 ~i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~g~~~t~~eIa~v~~Vse~TIr~rykel~~~~~-~l~~~~~~ 329 (345)
T 4bbr_M 258 YTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKILYEHRD-KLVDPQLI 329 (345)
T ss_dssp -------------------------------------------------------------------------
T ss_pred HHHHHHHhcccccCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH-hhcCHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999998644 44455553
No 2
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.8e-54 Score=442.47 Aligned_cols=263 Identities=16% Similarity=0.258 Sum_probs=134.2
Q ss_pred CCCCCCCCC--CcccccCCCceecCcCceeeccCcccccccccccC------CCCccccCc--------cccc-------
Q 010689 2 VWCSSCARH--VTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNA------AGQSQLSGN--------FVRT------- 58 (504)
Q Consensus 2 ~~Cp~Cgs~--~iv~D~~~G~~VC~~CG~Vlee~~id~~~~f~~~~------~G~s~v~G~--------~v~~------- 58 (504)
+.||+||+. .+++|+.+|++||++||.|++|++||++++|+.++ .+++++++. -+++
T Consensus 22 ~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~e~~id~~~EwR~F~~~~~~~~~~srvG~~~~~~~~~~~l~T~I~~~~~ 101 (345)
T 3k7a_M 22 LTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGET 101 (345)
T ss_dssp CCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCCCCCCCTTCCCCCC--------------CCCCCSSSCCCCCCCCCCTTS
T ss_pred CcCcCCCCCCCceEEECCCCCEecCCCCeEcccccccCCccccccccccccCCCCCccCCCCCccccCCCCceeeccCCC
Confidence 579999997 68899999999999999999999999777664332 122333221 1111
Q ss_pred -----------cccc-ccChHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHH
Q 010689 59 -----------IQSE-YGASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLA 126 (504)
Q Consensus 59 -----------~~~~-~~~srer~L~~a~~~I~~i~~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiA 126 (504)
|+.+ ..+++||+|.+|+..|+.+|.+|+|| +.++++|..||+++++.++++||+.+.++|||||+|
T Consensus 102 ~~~~~~r~l~~~~~~~~~~~~er~l~~a~~~I~~~~~~L~Lp--~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiA 179 (345)
T 3k7a_M 102 TDMRFTKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAELP--KIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIG 179 (345)
T ss_dssp CCHHHHHHHHHHHHHHTTSSCCTTHHHHHHHHHHHHHHTTCC--HHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTT
T ss_pred CCchhhhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHH
Confidence 1111 13678899999999999999999999 999999999999999999999999999999999999
Q ss_pred HHhcCCCCcHHHHHHHhCcChHHHHHHHHHHHHHhc------------ccccccccccCCccchHHHHHHhhCCCCCHHH
Q 010689 127 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLY------------IADESNVLKQVDPSIFLHKFTDRLLPGGNKKV 194 (504)
Q Consensus 127 CR~~~~p~tL~dIs~~~~vs~~~Lg~~~~~L~~~L~------------i~~~~~~~~~~dP~~~I~r~~~~L~~~l~~~V 194 (504)
||++++|++|+||++++++++++|+++|+.|.+.|+ +..++ ++|..||+|||+.|+ +++++
T Consensus 180 cR~e~~prtl~ei~~~~~v~~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~-----~~p~~~i~Rf~~~L~--l~~~v 252 (345)
T 3k7a_M 180 CRRAEVARTFKEIQSLIHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSG-----AQNLTYIPRFCSHLG--LPMQV 252 (345)
T ss_dssp SBTTBSSCCHHHHHHSSSCCSHHHHHHHHHHHHHHTCC------------------------------------------
T ss_pred HHHcCCCccHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccccccccccccCC-----CCHHHHHHHHHHHcC--CCHHH
Confidence 999999999999999999999999999999999998 54444 899999999999998 78999
Q ss_pred HHHHHHHHHHhcccccccCCChhHHHHHHHHHHHHhcCCCCCHhhHHhhhccCHHHHHHHHHHhhccCCCCCChHHHHHH
Q 010689 195 CDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMAR 274 (504)
Q Consensus 195 ~~~A~~I~~~~~~~~l~~GR~P~~IAAAalylAa~~~g~~~t~keIa~v~~Vse~TIrkr~kE~~~t~~~~lt~~~~~~~ 274 (504)
...|++|++.+.++|++.||+|.+|||||||||++++|+++|+++|+.++||+++||++||+||.+.. ..|+.++|.+.
T Consensus 253 ~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~~eIa~~~~Vse~TIr~~ykel~~~~-~~l~~~~~~~~ 331 (345)
T 3k7a_M 253 TTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKILYEHR-DKLVDPQLIAN 331 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH-HhhCCHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999876 57888888743
No 3
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=100.00 E-value=8.4e-40 Score=312.27 Aligned_cols=190 Identities=27% Similarity=0.471 Sum_probs=178.2
Q ss_pred cChHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCCCCcHHHHHHHh
Q 010689 64 GASRERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 143 (504)
Q Consensus 64 ~~srer~L~~a~~~I~~i~~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~~~~p~tL~dIs~~~ 143 (504)
++++||+|++|++.|.++|.+|+|| +.++++|..||++++++++++||++..++|||||+|||+++.|++++||++++
T Consensus 2 ~~~~er~l~~a~~~I~~~~~~L~L~--~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~ 79 (200)
T 1ais_B 2 SDAAERNLAFALSELDRITAQLKLP--RHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIA 79 (200)
T ss_dssp ------CHHHHHHHHHHHHHHHTCC--HHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3578999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred CcChHHHHHHHHHHHHHhcccccccccccCCccchHHHHHHhhCCCCCHHHHHHHHHHHHHhcccccccCCChhHHHHHH
Q 010689 144 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAA 223 (504)
Q Consensus 144 ~vs~~~Lg~~~~~L~~~L~i~~~~~~~~~~dP~~~I~r~~~~L~~~l~~~V~~~A~~I~~~~~~~~l~~GR~P~~IAAAa 223 (504)
++++++|+++|+.|.+.|++..+++ .++|..||+||++.|+ +++++...|++|++.+.++|++.||+|.+|||||
T Consensus 80 ~v~~~~i~~~~~~l~~~L~~~~~~~---~~~p~~~i~r~~~~L~--l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAa 154 (200)
T 1ais_B 80 RVDKKEIGRSYRFIARNLNLTPKKL---FVKPTDYVNKFADELG--LSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAA 154 (200)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCTTTT---CCCGGGGHHHHHHHHT--CCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcccCCcC---CCCHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHH
Confidence 9999999999999999999876531 2799999999999998 8899999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 224 LYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 224 lylAa~~~g~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
||+||+++|.++|+++|+.++||++.||++||++|.+
T Consensus 155 ly~A~~~~~~~~t~~ei~~~~~vs~~ti~~~~~~l~~ 191 (200)
T 1ais_B 155 LYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVE 191 (200)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999986
No 4
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=100.00 E-value=3.4e-36 Score=288.89 Aligned_cols=184 Identities=22% Similarity=0.369 Sum_probs=179.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCCCCcHHHHHHHhCcCh
Q 010689 68 ERLMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINV 147 (504)
Q Consensus 68 er~L~~a~~~I~~i~~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~~~~p~tL~dIs~~~~vs~ 147 (504)
||+|++|++.|+++|.+|+|| +.++++|..||++++..+.++|+++..++|||||+|||.++.|++++||+.++++++
T Consensus 2 er~l~~a~~~I~~~~~~L~L~--~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p~~l~di~~~~~~~~ 79 (207)
T 1c9b_A 2 DRAMMNAFKEITTMADRINLP--RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISK 79 (207)
T ss_dssp GGGHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHTSSSCH
T ss_pred chHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCH
Confidence 689999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccccccccCCccchHHHHHHhhCCCCCHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHH
Q 010689 148 YELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVS 227 (504)
Q Consensus 148 ~~Lg~~~~~L~~~L~i~~~~~~~~~~dP~~~I~r~~~~L~~~l~~~V~~~A~~I~~~~~~~~l~~GR~P~~IAAAalylA 227 (504)
++|+++|+.|.+.|+++.++ .+|..||.||++.|+ ++.++...|+.|++.+.++|++.||+|++|||||||+|
T Consensus 80 ~~i~~~~~~ll~~L~~~l~~-----~~p~~~l~r~~~~l~--l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA 152 (207)
T 1c9b_A 80 KEIGRCFKLILKALETSVDL-----ITTGDFMSRFCSNLC--LPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMA 152 (207)
T ss_dssp HHHHHHHHHHHHHTTCCCCC-----CCTHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcCc-----CCHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHH
Confidence 99999999999999998765 899999999999998 88999999999999999999999999999999999999
Q ss_pred HHhcCCCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 228 ALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 228 a~~~g~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
++++|.++++++|+.++||++.||+++|++|.+
T Consensus 153 ~~~~~~~~~~~~i~~~~~v~~~tI~~~~~~l~~ 185 (207)
T 1c9b_A 153 SQASAEKRTQKEIGDIAGVADVTIRQSYRLIYP 185 (207)
T ss_dssp HHTSSSCCCHHHHHHHHTCCHHHHHHHHHHHGG
T ss_pred HHHHCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999986
No 5
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.89 E-value=1.4e-22 Score=197.95 Aligned_cols=181 Identities=14% Similarity=0.128 Sum_probs=164.8
Q ss_pred HHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHhCcccCC-CchhHHHHHHHHHHHHhcCCCCcHHHHHHHh------
Q 010689 71 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKG-RRTEQVQASCLYLACRQKSKPFLLIDFSNYL------ 143 (504)
Q Consensus 71 L~~a~~~I~~i~~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rG-R~~~~vaAACLYiACR~~~~p~tL~dIs~~~------ 143 (504)
...+.+.|.+++..|+|| ..++.+|..||++++..+.+++ +++..|++||||+|||.++.|++++||+.++
T Consensus 28 R~~~~~~i~~v~~~l~L~--~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~~~~~ 105 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLR--QRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSL 105 (235)
T ss_dssp HHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcccHHHHHHHHHHHccc
Confidence 566889999999999999 9999999999999999888888 9999999999999999999999999999876
Q ss_pred --CcChHHHHHHHHHHHHHhcccccccccccCCccchHHHHHHhhCCCCCHHHHHHHHHHHHHhcccccccCCChhHHHH
Q 010689 144 --NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCG 221 (504)
Q Consensus 144 --~vs~~~Lg~~~~~L~~~L~i~~~~~~~~~~dP~~~I~r~~~~L~~~l~~~V~~~A~~I~~~~~~~~l~~GR~P~~IAA 221 (504)
..+..+|.+..+.|.+.|+.+..+ .+|..||.+|+..++ +++++...|..+++.+..+++..|++|++|||
T Consensus 106 ~~~~~~~~I~~~E~~iL~~L~f~l~~-----~~P~~~l~~~~~~~~--~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAa 178 (235)
T 1zp2_A 106 KVKLSRSNISEIEFEIISVLDAFLIV-----HHPYTSLEQAFHDGI--INQKQLEFAWSIVNDSYASSLCLMAHPHQLAY 178 (235)
T ss_dssp SSCCCHHHHHHHHHHHHHHTTTCCCC-----CCTHHHHHHHHHTTS--SCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHHCCCcEEe-----cChHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHcCCchhccCHHHHHH
Confidence 578999999999999999998765 889999999999987 78999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 222 AALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 222 AalylAa~~~g~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
||||+|++++|.+.+ .+.....++++.+|+.+++++.+.
T Consensus 179 Aai~lA~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~i~~l 217 (235)
T 1zp2_A 179 AALLISCCNDENTIP-KLLDLIKSTDAFKVILCVQRIISI 217 (235)
T ss_dssp HHHHHHHTSCTTHHH-HHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCC-CCcchhhcCCHHHHHHHHHHHHHH
Confidence 999999999887643 244444599999999999998753
No 6
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.83 E-value=1.8e-19 Score=177.94 Aligned_cols=181 Identities=14% Similarity=0.100 Sum_probs=160.3
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCCCCcHHHHHHHhCc------
Q 010689 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI------ 145 (504)
Q Consensus 72 ~~a~~~I~~i~~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~~~~p~tL~dIs~~~~v------ 145 (504)
..+.+.|.+++..|+|| ..+..+|..||++++..+.+++++...+++||||+|||.++.|++++||..+.+.
T Consensus 42 ~~~~~~i~~v~~~l~l~--~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE~~~~l~d~~~~~~~~~~~~~ 119 (258)
T 2i53_A 42 REGARFIFDVGTRLGLH--YDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLNDVQ 119 (258)
T ss_dssp HHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHcCCC--hHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHccccccccHHHHHHHHHHHhchhh
Confidence 45789999999999999 9999999999999999999999999999999999999999999999999976431
Q ss_pred -------ChHHHHHHHHHHHHHhcccccccccccCCccchHHHHHHhhCCCCCH----HHHHHHHHHHHHhcccccccCC
Q 010689 146 -------NVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK----KVCDTARDILASMKRDWITTGR 214 (504)
Q Consensus 146 -------s~~~Lg~~~~~L~~~L~i~~~~~~~~~~dP~~~I~r~~~~L~~~l~~----~V~~~A~~I~~~~~~~~l~~GR 214 (504)
...+|.+..+.|.+.|+.+..+ .+|..|+.+|+..|+ .+. ++...|+.+++.+..+++..+.
T Consensus 120 ~~~~~~~~~~~i~~~E~~iL~~L~f~l~~-----~~P~~fl~~~~~~l~--~~~~~~~~~~~~A~~l~~~s~~~~~~l~~ 192 (258)
T 2i53_A 120 FGQFGDDPKEEVMVLERILLQTIKFDLQV-----EHPYQFLLKYAKQLK--GDKNKIQKLVQMAWTFVNDSLCTTLSLQW 192 (258)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHTTTCCCC-----CCHHHHHHHHHHTBC--SCHHHHHHHHHHHHHHHHHHTTTTGGGTS
T ss_pred hhhhhhhHHHHHHHHHHHHHHHCCCceec-----cChHHHHHHHHHHhC--CCcchHHHHHHHHHHHHHHHHcCCchhcc
Confidence 2568999999999999998765 789999999999997 444 6899999999999999999999
Q ss_pred ChhHHHHHHHHHHHHhcCCCCCHhhHH-------hh--hccCHHHHHHHHHHhhcc
Q 010689 215 KPSGLCGAALYVSALTHGLKFSKSDIV-------KI--VHICEATLMKRLIEFENT 261 (504)
Q Consensus 215 ~P~~IAAAalylAa~~~g~~~t~keIa-------~v--~~Vse~TIrkr~kE~~~t 261 (504)
+|+.||+||||+|++++|.++++.+.. .. .++++.+|+.+++++.+.
T Consensus 193 ~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~l~~~~~~il~l 248 (258)
T 2i53_A 193 EPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDL 248 (258)
T ss_dssp CHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSSCCHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999887654332 33 499999999999998764
No 7
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=99.82 E-value=9e-19 Score=173.03 Aligned_cols=186 Identities=14% Similarity=0.081 Sum_probs=161.5
Q ss_pred HHHHH-HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCCCCcHHHHHHHhCc
Q 010689 67 RERLM-EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI 145 (504)
Q Consensus 67 rer~L-~~a~~~I~~i~~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~~~~p~tL~dIs~~~~v 145 (504)
.|..+ ..+.+.|.+++..|+|| ..+..+|..||++++..+.+++++...+++||||+|||.++.|+++.||..++..
T Consensus 26 ~e~~~R~~~~~~i~~v~~~l~l~--~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~p~~l~d~~~~~~~ 103 (257)
T 2ivx_A 26 KELSCRQQAANLIQEMGQRLNVS--QLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHA 103 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCc--HHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccCCcCHHHHHHHHHH
Confidence 34333 45789999999999999 9999999999999999999999999999999999999999999999999877531
Q ss_pred -----------C-------hHHHHHHHHHHHHHhcccccccccccCCccchHHHHHHhhCCCCCHHHHHHHHHHHHHhc-
Q 010689 146 -----------N-------VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK- 206 (504)
Q Consensus 146 -----------s-------~~~Lg~~~~~L~~~L~i~~~~~~~~~~dP~~~I~r~~~~L~~~l~~~V~~~A~~I~~~~~- 206 (504)
. ..+|.+..+.|.+.|+.+..+ .+|..|+.+|+..++ .+.++...|+.++....
T Consensus 104 ~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~-----~~P~~fl~~~~~~l~--~~~~~~~~A~~~~~~sl~ 176 (257)
T 2ivx_A 104 CLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITI-----EHPHTDVVKCTQLVR--ASKDLAQTSYFMATNSLH 176 (257)
T ss_dssp HHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCC-----CCHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHH
T ss_pred HhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEe-----eCcHHHHHHHHHHhC--CCcHHHHHHHHHHHhhhh
Confidence 1 678999999999999998765 789999999999997 67899999999997765
Q ss_pred ccccccCCChhHHHHHHHHHHHHhcCCCCCHh----hHHhhh--ccCHHHHHHHHHHhhcc
Q 010689 207 RDWITTGRKPSGLCGAALYVSALTHGLKFSKS----DIVKIV--HICEATLMKRLIEFENT 261 (504)
Q Consensus 207 ~~~l~~GR~P~~IAAAalylAa~~~g~~~t~k----eIa~v~--~Vse~TIrkr~kE~~~t 261 (504)
...+..+..|+.||+||||+|++++|.++++. .+...+ ++++.+|+.++++|.+.
T Consensus 177 ~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~l~~~~~~i~~~ 237 (257)
T 2ivx_A 177 LTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTHEFLQI 237 (257)
T ss_dssp HCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHHHHHHHHHHHH
T ss_pred cccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 45667899999999999999999999887653 355543 79999999999999764
No 8
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.79 E-value=4.8e-18 Score=170.66 Aligned_cols=184 Identities=10% Similarity=0.047 Sum_probs=164.0
Q ss_pred HHHHH-HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCCCC-cHHHHHHHhC
Q 010689 67 RERLM-EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPF-LLIDFSNYLN 144 (504)
Q Consensus 67 rer~L-~~a~~~I~~i~~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~~~~p~-tL~dIs~~~~ 144 (504)
.++.+ ..+.+.|.+++..|+|| ..+..+|..||++++..+.+++++...+++||||+|||.+.+|+ ++.||..++.
T Consensus 38 ~e~~~R~~~~~~I~~v~~~l~L~--~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~ 115 (285)
T 3rgf_B 38 EYWKLQIFFTNVIQALGEHLKLR--QQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAAT 115 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHH
Confidence 44444 34679999999999999 99999999999999999999999999999999999999999998 6888876542
Q ss_pred ----------------cChHHHHHHHHHHHHHhcccccccccccCCccchHHHHHHhhCCCCCHHHHHHHHHHHHHhccc
Q 010689 145 ----------------INVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRD 208 (504)
Q Consensus 145 ----------------vs~~~Lg~~~~~L~~~L~i~~~~~~~~~~dP~~~I~r~~~~L~~~l~~~V~~~A~~I~~~~~~~ 208 (504)
....+|.+..+.|.+.|+.+... .+|..|+.+|+..|+ .+.++...|+.+++....+
T Consensus 116 ~~~k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v-----~~P~~fL~~~~~~l~--~~~~~~~~A~~~l~~sl~t 188 (285)
T 3rgf_B 116 SVLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIV-----YHPYRPLLQYVQDMG--QEDMLLPLAWRIVNDTYRT 188 (285)
T ss_dssp HHHHHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCC-----CCSHHHHHHHHHHHT--CHHHHHHHHHHHHHHHTTS
T ss_pred HHHcccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEe-----CChHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHcc
Confidence 35689999999999999998765 789999999999998 7789999999999999888
Q ss_pred ccccCCChhHHHHHHHHHHHHhcCCCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 209 WITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 209 ~l~~GR~P~~IAAAalylAa~~~g~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
.++.+..|+.||+||||+|+++.|.+. ...-..+++++..|...++++.+.
T Consensus 189 ~~~l~~~Ps~IAaAaiylA~~~~~~~~--~~W~~~~~~~~~~l~~~~~~il~l 239 (285)
T 3rgf_B 189 DLCLLYPPFMIALACLHVACVVQQKDA--RQWFAELSVDMEKILEIIRVILKL 239 (285)
T ss_dssp SHHHHSCHHHHHHHHHHHHHHHTTCCC--HHHHHTSCSCHHHHHHHHHHHHHH
T ss_pred ChhhccCHHHHHHHHHHHHHHHcCCCh--hhHHHHHCCCHHHHHHHHHHHHHH
Confidence 889999999999999999999998765 467888999999999999988753
No 9
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=99.79 E-value=3.2e-18 Score=170.49 Aligned_cols=180 Identities=11% Similarity=0.091 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCC-CCcHHHHHHHhC--cChH
Q 010689 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLLIDFSNYLN--INVY 148 (504)
Q Consensus 72 ~~a~~~I~~i~~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~~~~-p~tL~dIs~~~~--vs~~ 148 (504)
....+.|.+++..++++ ..+...|..+++++.....+++++...+++||+|+|||.+.. |.++.||..+++ .+..
T Consensus 39 ~~lv~wl~~v~~~~~l~--~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~ 116 (269)
T 2b9r_A 39 AILIDWLVQVQMKFRLL--QETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKH 116 (269)
T ss_dssp HHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHH
T ss_pred HHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHH
Confidence 44678999999999999 999999999999999988889999999999999999999887 899999999885 7999
Q ss_pred HHHHHHHHHHHHhcccccccccccCCccchHHHHHHhhCCCCCHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHH
Q 010689 149 ELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSA 228 (504)
Q Consensus 149 ~Lg~~~~~L~~~L~i~~~~~~~~~~dP~~~I~r~~~~L~~~l~~~V~~~A~~I~~~~~~~~l~~GR~P~~IAAAalylAa 228 (504)
+|.+..+.|.+.|+.+..+ ++|..|+.||+..++ .+.++...|..|++....+....|.+|+.||+||||+|.
T Consensus 117 eI~~mE~~IL~~L~f~l~~-----~tp~~fl~~~~~~~~--~~~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~ 189 (269)
T 2b9r_A 117 QIRQMEMKILRALNFGLGR-----PLPLHFLRRASKIGE--VDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLAL 189 (269)
T ss_dssp HHHHHHHHHHHHTTSCCCC-----CCHHHHHHHHHHSSC--CCHHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCC-----CCHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHH
Confidence 9999999999999988765 789999999999887 778899999999999888888899999999999999999
Q ss_pred HhcCCCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 229 LTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 229 ~~~g~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
.+.|.+...+++...+|+++.+|+.+++++.+
T Consensus 190 ~~l~~~~w~~~l~~~tg~~~~~l~~~~~~l~~ 221 (269)
T 2b9r_A 190 KILDNGEWTPTLQHYLSYTEESLLPVMQHLAK 221 (269)
T ss_dssp HHHTCCCSCTTHHHHSCCCSSTTTTHHHHHHH
T ss_pred HHhCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99998888899999999999999999998864
No 10
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=99.76 E-value=1.4e-17 Score=164.91 Aligned_cols=181 Identities=15% Similarity=0.096 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCC-CCcHHHHHHHhC--cChH
Q 010689 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLLIDFSNYLN--INVY 148 (504)
Q Consensus 72 ~~a~~~I~~i~~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~~~~-p~tL~dIs~~~~--vs~~ 148 (504)
..+.+.|.+++..++++ ..+.-.|..++.++....-+..++...+++||||+|||.++. |.++.||..+.+ .+..
T Consensus 40 ~~lvdwl~~v~~~~~l~--~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~ 117 (260)
T 2cch_B 40 AILVDWLVEVGEEYKLQ--NETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKK 117 (260)
T ss_dssp HHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHH
T ss_pred HHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHH
Confidence 45779999999999999 999999999999999877777788899999999999999988 999999998874 8899
Q ss_pred HHHHHHHHHHHHhcccccccccccCCccchHHHHHHhhCCCCCHHHHHHHHHHHHHhccccc-ccCCChhHHHHHHHHHH
Q 010689 149 ELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWI-TTGRKPSGLCGAALYVS 227 (504)
Q Consensus 149 ~Lg~~~~~L~~~L~i~~~~~~~~~~dP~~~I~r~~~~L~~~l~~~V~~~A~~I~~~~~~~~l-~~GR~P~~IAAAalylA 227 (504)
+|.+..+.|.+.|+.+..+ +.|..|+.+|+..++.+ ++.+...|+.+++....+.. ..|.+|+.|||||||+|
T Consensus 118 ~i~~mE~~iL~~L~~~l~~-----~tp~~fl~~~~~~l~~~-~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA 191 (260)
T 2cch_B 118 QVLRMEHLVLKVLTFDLAA-----PTVNQFLTQYFLHQQPA-NCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLA 191 (260)
T ss_dssp HHHHHHHHHHHHTTTCCCC-----CCHHHHHHHHHTTCSSC-CHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCC-----CCHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999988765 78999999999999621 34788999999988654444 78999999999999999
Q ss_pred HHhcCCCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 228 ALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 228 a~~~g~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
+...|.+...++++.++|+++.+|+.+++++.+
T Consensus 192 ~~~~~~~~w~~~l~~~~g~~~~~i~~~~~~l~~ 224 (260)
T 2cch_B 192 LYTVTGQSWPESLIRKTGYTLESLKPCLMDLHQ 224 (260)
T ss_dssp HHHHHSCCSCHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHhCCCcchHHHHHHhCcCHHHHHHHHHHHHH
Confidence 999888888899999999999999999999875
No 11
>1ngm_B Transcription factor IIIB BRF1 subunit; TFIIIB, TBP, TAF, protein-DNA complex, transcription/DNA complex; 2.95A {Saccharomyces cerevisiae} SCOP: j.104.1.1
Probab=99.75 E-value=7.8e-20 Score=143.94 Aligned_cols=60 Identities=37% Similarity=0.578 Sum_probs=52.8
Q ss_pred CCCCCC-CccCCCCCCCCCCCChHHHhhcCCChhhHHHHHHhhhccCHHHHHHHHHHHHHH
Q 010689 402 TPGVDA-TTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAA 461 (504)
Q Consensus 402 ~~~~~~-~~~~~d~~~~lsdiDD~Eid~yil~eeE~~~K~~lW~~~N~eyL~EQ~~Ke~~~ 461 (504)
+|.++. .++.+|++++||||||+|||.|||||+|+++|++||+++|+|||++|++|++++
T Consensus 11 lp~t~~~l~~~~dd~~~lsDiDD~Eid~yiLteeEv~~K~~iW~~~N~dyL~eq~~K~~k~ 71 (72)
T 1ngm_B 11 LPTTDTYLSKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLKQ 71 (72)
T ss_dssp SCCHHHHHTTSCCCSSCCTTSCCSSGGGSSCCHHHHHHHHHHHHHHTTTHHHHHHHTTTTT
T ss_pred CCCchhHHHhccCCccccccCCHHHHHHhhCCHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 344433 456778999999999999999999999999999999999999999999998763
No 12
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.75 E-value=4.6e-18 Score=176.01 Aligned_cols=181 Identities=14% Similarity=0.082 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCCCCcHHHHHHHhCc------
Q 010689 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI------ 145 (504)
Q Consensus 72 ~~a~~~I~~i~~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~~~~p~tL~dIs~~~~v------ 145 (504)
..+.+.|.+++..|+|| ..++.+|..||++++..+.+++++...|++||||+|||.+..|+++.||..++..
T Consensus 39 ~~~v~wI~ev~~~l~L~--~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~p~~l~d~v~v~~~~~~~~~ 116 (358)
T 2pk2_A 39 QQAANLLQDMGQRLNVS--QLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAHTCLHPQE 116 (358)
T ss_dssp HHHHHHHHHHHTTTTCC--HHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHTTHHHHHCSSS
T ss_pred HHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcccc
Confidence 45789999999999999 9999999999999999999999999999999999999999999999999865421
Q ss_pred ------------ChHHHHHHHHHHHHHhcccccccccccCCccchHHHHHHhhCCCCCHHHHHHHHHHHHHhc-cccccc
Q 010689 146 ------------NVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK-RDWITT 212 (504)
Q Consensus 146 ------------s~~~Lg~~~~~L~~~L~i~~~~~~~~~~dP~~~I~r~~~~L~~~l~~~V~~~A~~I~~~~~-~~~l~~ 212 (504)
...+|.+..+.|.+.|+++..+ .+|..||.+|+..|. .+.++...|+.|++... ...++.
T Consensus 117 ~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v-----~~P~~fL~~~~~~l~--~~~~l~~~A~~ll~~sl~~t~l~l 189 (358)
T 2pk2_A 117 SLPDTRSEAYLQQVQDLVILESIILQTLGFELTI-----DHPHTHVVKCTQLVR--ASKDLAQTSYFMATNSLHLTTFSL 189 (358)
T ss_dssp CCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCC-----CCTTHHHHHHHHHTT--CCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred ccccccchhhhHHHHHHHHHHHHHHHHcCCceeC-----CCHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhcCcchh
Confidence 2567888999999999998765 789999999999997 67899999999997765 355678
Q ss_pred CCChhHHHHHHHHHHHHhcCCCCCHh----hHHhh--hccCHHHHHHHHHHhhcc
Q 010689 213 GRKPSGLCGAALYVSALTHGLKFSKS----DIVKI--VHICEATLMKRLIEFENT 261 (504)
Q Consensus 213 GR~P~~IAAAalylAa~~~g~~~t~k----eIa~v--~~Vse~TIrkr~kE~~~t 261 (504)
+..|+.||+||||+|+++++.++++. .+..+ ++|++.+|+.++++|.+.
T Consensus 190 ~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~~~l~~i~~~il~~ 244 (358)
T 2pk2_A 190 QYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELLDELTHEFLQI 244 (358)
T ss_dssp TSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCHHHHHHHHHHHHHH
Confidence 89999999999999999999877653 35555 478999999999999875
No 13
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=99.74 E-value=6.1e-17 Score=161.30 Aligned_cols=180 Identities=16% Similarity=0.171 Sum_probs=157.0
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCC-CCcHHHHHHHhC--cChH
Q 010689 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLLIDFSNYLN--INVY 148 (504)
Q Consensus 72 ~~a~~~I~~i~~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~~~~-p~tL~dIs~~~~--vs~~ 148 (504)
....+.|.+++..++++ ..+.-.|..++.++.....+..++...+++||||+|||.++. |+++.||+.+.+ .+..
T Consensus 58 ~~lv~wl~~v~~~~~l~--~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~ 135 (271)
T 2w96_A 58 KIVATWMLEVCEEQKCE--EEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPE 135 (271)
T ss_dssp HHHHHHHHHHHHHTTCC--TTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHH
T ss_pred HHHHHHHHHHHHHHCCc--hhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHH
Confidence 45678899999999999 899999999999999988888889999999999999999888 999999998864 7999
Q ss_pred HHHHHHHHHHHHhcccccccccccCCccchHHHHHHhhCCCCCHHH----HHHHHHHHHHhcccccccCCChhHHHHHHH
Q 010689 149 ELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKV----CDTARDILASMKRDWITTGRKPSGLCGAAL 224 (504)
Q Consensus 149 ~Lg~~~~~L~~~L~i~~~~~~~~~~dP~~~I~r~~~~L~~~l~~~V----~~~A~~I~~~~~~~~l~~GR~P~~IAAAal 224 (504)
+|.+..+.|.+.|+.+..+ ++|..|+.+|+..++ .+.+. ...|..+++....+..+.|.+|+.||||||
T Consensus 136 eI~~mE~~IL~~L~~~l~~-----~tp~~fl~~~~~~l~--~~~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai 208 (271)
T 2w96_A 136 ELLQMELLLVNKLKWNLAA-----MTPHDFIEHFLSKMP--EAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSV 208 (271)
T ss_dssp HHHHHHHHHHHHTTTCCCC-----CCHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCccCC-----CCHHHHHHHHHHHcC--CCchHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHH
Confidence 9999999999999998765 789999999999997 55443 356777777665566667999999999999
Q ss_pred HHHHHhcCC---------CCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 225 YVSALTHGL---------KFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 225 ylAa~~~g~---------~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
|+|....|. ..++++++.++|+++.+|+.+++++.+
T Consensus 209 ~lA~~~l~~~~~~~~~w~~~~~~~l~~~~~v~~~~l~~c~~~i~~ 253 (271)
T 2w96_A 209 VAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCDPDCLRACQEQIEA 253 (271)
T ss_dssp HHHHHHHHHHSTTSCGGGTTHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhCcCCCCCCCcHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999987753 224678999999999999999999875
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.71 E-value=3.5e-16 Score=159.85 Aligned_cols=164 Identities=16% Similarity=0.116 Sum_probs=144.0
Q ss_pred hHHHHHH-HHHHHHHHHHHHcC--CCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCCCCcHHHHHHH
Q 010689 66 SRERLME-KAFDDMRQMKNALN--IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNY 142 (504)
Q Consensus 66 srer~L~-~a~~~I~~i~~~L~--Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~~~~p~tL~dIs~~ 142 (504)
..|+.+. .+...|.++|..|+ || ..++.+|..||++++..+.+++..+..|++||||+||+.+++|+++.||+..
T Consensus 51 eeE~~lr~~~~~~I~ev~~~l~~~Lp--~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~ 128 (323)
T 1jkw_A 51 HEEMTLCKYYEKRLLEFCSVFKPAMP--RSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGN 128 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTTCC--HHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHH
Confidence 3455554 45699999999999 99 9999999999999999999999999999999999999999999999999887
Q ss_pred hCcC-------hHHHHHHHHHHHHHhcccccccccccCCccchHHHHHHhhC-----CCCCHHHHHHHHHHHHHhccccc
Q 010689 143 LNIN-------VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL-----PGGNKKVCDTARDILASMKRDWI 210 (504)
Q Consensus 143 ~~vs-------~~~Lg~~~~~L~~~L~i~~~~~~~~~~dP~~~I~r~~~~L~-----~~l~~~V~~~A~~I~~~~~~~~l 210 (504)
+..+ ...|.+..+.|.+.|+.+..+ ..|..||.+|+..|. .+.+..+...|+.+++.+..+.+
T Consensus 129 ~~~~p~~~~~~~~~Il~~E~~iL~~L~f~l~v-----~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~ 203 (323)
T 1jkw_A 129 LRESPLGQEKALEQILEYELLLIQQLNFHLIV-----HNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDA 203 (323)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHTTTCCCC-----CCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTH
T ss_pred hccChhhhHHHHHHHHHHHHHHHHHCCCcEEc-----CChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccH
Confidence 7655 578999999999999998765 789999999998761 12346788999999999888888
Q ss_pred ccCCChhHHHHHHHHHHHHhcCCCCC
Q 010689 211 TTGRKPSGLCGAALYVSALTHGLKFS 236 (504)
Q Consensus 211 ~~GR~P~~IAAAalylAa~~~g~~~t 236 (504)
..+..|+.||+||||+|++++|.+++
T Consensus 204 ~l~~~Ps~IAaAai~lA~~~~~~~~~ 229 (323)
T 1jkw_A 204 YLLYTPSQIALTAILSSASRAGITME 229 (323)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHSCCCT
T ss_pred HHcCCHHHHHHHHHHHHHHHcCCChH
Confidence 88999999999999999999998765
No 15
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=99.67 E-value=9e-16 Score=151.67 Aligned_cols=182 Identities=13% Similarity=0.039 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCC-CCcHHHHHHHhC--cChH
Q 010689 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLLIDFSNYLN--INVY 148 (504)
Q Consensus 72 ~~a~~~I~~i~~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~~~~-p~tL~dIs~~~~--vs~~ 148 (504)
....+.|.+++..++++ ..+.-.|..|+.++...+.+++++...+++||+|+|||.+.. |.++.||+.+++ .+..
T Consensus 52 ~~lvdwl~ev~~~~~l~--~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~ 129 (257)
T 1g3n_C 52 KLLGTWMFSVCQEYNLE--PNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQ 129 (257)
T ss_dssp HHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHH
T ss_pred HHHHHHHHHHHHHhCCC--ccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHH
Confidence 45679999999999999 999999999999999988888899999999999999998665 999999998865 7899
Q ss_pred HHHHHHHHHHHHhcccccccccccCCccchHHHHHHhhCCCC--CHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHH
Q 010689 149 ELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG--NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYV 226 (504)
Q Consensus 149 ~Lg~~~~~L~~~L~i~~~~~~~~~~dP~~~I~r~~~~L~~~l--~~~V~~~A~~I~~~~~~~~l~~GR~P~~IAAAalyl 226 (504)
+|.+..+.|.+.|+.+..+ +.|..|+.+|+..++.+. ...+...|..+++....+..+.+.+|+.||+||||+
T Consensus 130 ~i~~mE~~iL~~L~~~l~~-----~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~l 204 (257)
T 1g3n_C 130 ELIDQEKELLEKLAWRTEA-----VLATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCAL 204 (257)
T ss_dssp HHHHHHHHHHHHTTTCCCC-----CCHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCcCCC-----CCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHH
Confidence 9999999999999988765 789999999999996321 123456688888776666777899999999999999
Q ss_pred HHHhcCC------CCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 227 SALTHGL------KFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 227 Aa~~~g~------~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
|....|. +...+.++..+|+++.+|+.+++.+.+
T Consensus 205 A~~~l~~~~~~~~~~w~~~l~~~t~~~~~~l~~c~~~i~~ 244 (257)
T 1g3n_C 205 LVPANVIPQDTHSGGVVPQLASILGCDVSVLQAAVEQILT 244 (257)
T ss_dssp HCCGGGSCC-----CHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHhCCCcccchhhHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9988875 345788999999999999999998865
No 16
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=99.67 E-value=2.4e-15 Score=148.37 Aligned_cols=183 Identities=11% Similarity=0.132 Sum_probs=156.9
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcC-CCCcHHHHHHHhC--cChH
Q 010689 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS-KPFLLIDFSNYLN--INVY 148 (504)
Q Consensus 72 ~~a~~~I~~i~~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~~~-~p~tL~dIs~~~~--vs~~ 148 (504)
....+.|.+++..++++ ..+.-.|..|+.++...+.+++++...+++||+|+|||.+. .|.++.||+.+++ .+..
T Consensus 53 ~~lvdwl~~v~~~~~l~--~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~ 130 (254)
T 2f2c_A 53 TILLTWMHLLCESFELD--KSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNL 130 (254)
T ss_dssp HHHHHHHHHHHHHTTCC--TTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHH
T ss_pred HHHHHHHHHHHHHHCCC--chHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHH
Confidence 45678999999999999 89999999999999998888999999999999999999965 6999999987754 7899
Q ss_pred HHHHHHHHHHHHhcccccccccccCCccchHHHHHHhhCCCC-C-HHHHHHHHHHHHHhcccccccCCChhHHHHHHHHH
Q 010689 149 ELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-N-KKVCDTARDILASMKRDWITTGRKPSGLCGAALYV 226 (504)
Q Consensus 149 ~Lg~~~~~L~~~L~i~~~~~~~~~~dP~~~I~r~~~~L~~~l-~-~~V~~~A~~I~~~~~~~~l~~GR~P~~IAAAalyl 226 (504)
+|.+..+.|.+.|+.+..+ +.|..|+.+|+..++.+. . ..+...|..+++....+....+.+|+.|||||||+
T Consensus 131 ~i~~mE~~IL~~L~~~l~~-----~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~l 205 (254)
T 2f2c_A 131 ELINQEKDILEALKWDTEA-----VLATDFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLT 205 (254)
T ss_dssp HHHHHHHHHHHHTTTCCCC-----CCGGGSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCcCCC-----CCHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHH
Confidence 9999999999999988765 789999999999996321 1 12356688888776667777899999999999999
Q ss_pred HHHhc-CCCCC----HhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 227 SALTH-GLKFS----KSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 227 Aa~~~-g~~~t----~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
|.+.. +.+.+ ++.++..+|+++.+|+.+++.+.+.
T Consensus 206 a~~~~~~~~~~w~~~~~~l~~~tg~~~~~l~~c~~~i~~~ 245 (254)
T 2f2c_A 206 TIETDNTNCRPWTCYLEDLSSILNFSTNTVRTVKDQVSEA 245 (254)
T ss_dssp HHHTTCCSSCCTHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCChHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 99986 33455 7899999999999999999988753
No 17
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.61 E-value=2.2e-14 Score=143.87 Aligned_cols=175 Identities=13% Similarity=0.063 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHhC-cccCCCchhHHHHHHHHHHHHhcCC-CCcHHHHHHHhC--cCh
Q 010689 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVAR-NFTKGRRTEQVQASCLYLACRQKSK-PFLLIDFSNYLN--INV 147 (504)
Q Consensus 72 ~~a~~~I~~i~~~L~Lp~~~~i~e~A~~iyk~a~~~-~~~rGR~~~~vaAACLYiACR~~~~-p~tL~dIs~~~~--vs~ 147 (504)
....+.|.+++..++++ ..+.-.|..++.++... +.++++....+++||+|+|||.+.. |.++.||+.+++ .+.
T Consensus 51 ~~lv~wl~~v~~~~~l~--~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~ 128 (283)
T 1w98_B 51 AILLDWLMEVCEVYKLH--RETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSG 128 (283)
T ss_dssp HHHHHHHHHHHHHTTCB--HHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCH
T ss_pred HHHHHHHHHHHHHhCCC--ccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCH
Confidence 45678899999999999 99999999999999986 5778899999999999999999876 999999998874 789
Q ss_pred HHHHHHHHHHHHHhcccccccccccCCccchHHHHHHhhCCCC---------CHHHHHHHHHHHHHhcccccccCCChhH
Q 010689 148 YELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG---------NKKVCDTARDILASMKRDWITTGRKPSG 218 (504)
Q Consensus 148 ~~Lg~~~~~L~~~L~i~~~~~~~~~~dP~~~I~r~~~~L~~~l---------~~~V~~~A~~I~~~~~~~~l~~GR~P~~ 218 (504)
.+|.+..+.|.+.|+.+..+ +.|..|+.+|+..++.+. +......+..+++....+.-..+.+|+.
T Consensus 129 ~ei~~mE~~IL~~L~~~l~~-----~tp~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~ 203 (283)
T 1w98_B 129 DEILTMELMIMKALKWRLSP-----LTIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGI 203 (283)
T ss_dssp HHHHHHHHHHHHHTTTCCCC-----CCHHHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHH
T ss_pred HHHHHHHHHHHHHcCCcCCC-----CCHHHHHHHHHHHhccCchhhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHH
Confidence 99999999999999988765 789999999999885211 1223334555666555455568999999
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 219 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 219 IAAAalylAa~~~g~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
|||||||+|+. ++.+..++|+++.+|+.+++.+..
T Consensus 204 iAaAai~la~~-------~~~l~~~tg~~~~~i~~c~~~l~~ 238 (283)
T 1w98_B 204 LAASALYHFSS-------SELMQKVSGYQWCDIENCVKWMVP 238 (283)
T ss_dssp HHHHHHHHTSC-------HHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-------hHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999852 778999999999999999999865
No 18
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=99.57 E-value=7.9e-14 Score=141.33 Aligned_cols=183 Identities=15% Similarity=0.092 Sum_probs=155.7
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHh-cCCCCcHHHHHHHhC--cChH
Q 010689 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ-KSKPFLLIDFSNYLN--INVY 148 (504)
Q Consensus 72 ~~a~~~I~~i~~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~-~~~p~tL~dIs~~~~--vs~~ 148 (504)
..+.+.|.+++..++|+ ..+.-.|..||.+++....++......++++|+|+||+. +..|.++.+|..+.+ .+..
T Consensus 72 ~~lvdwl~ev~~~~~l~--~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~ 149 (306)
T 3g33_B 72 KMLAYWMLEVCEEQRCE--EEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPR 149 (306)
T ss_dssp HHHHHHHHHHHHHTTCC--TTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHH
T ss_pred HHHHHHHHHHHHHhCCc--HhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHH
Confidence 45779999999999999 899999999999999988888899999999999999998 556889999998875 7889
Q ss_pred HHHHHHHHHHHHhcccccccccccCCccchHHHHHHhhCCCC-C-HHHHHHHHHHHHHhcccccccCCChhHHHHHHHHH
Q 010689 149 ELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-N-KKVCDTARDILASMKRDWITTGRKPSGLCGAALYV 226 (504)
Q Consensus 149 ~Lg~~~~~L~~~L~i~~~~~~~~~~dP~~~I~r~~~~L~~~l-~-~~V~~~A~~I~~~~~~~~l~~GR~P~~IAAAalyl 226 (504)
+|.+..+.|.+.|+....+ ..|..|+.+|...++... . ..+...|..+++....+..+.+.+|+.||+||||+
T Consensus 150 ~i~~mE~~IL~~L~f~l~~-----~tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~l 224 (306)
T 3g33_B 150 QLRDWEVLVLGKLKWDLAA-----VIAHDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGA 224 (306)
T ss_dssp HHHHHHHHHHHHTTTCCCC-----CCGGGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCC-----CCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHH
Confidence 9999999999999988765 789999999999985321 1 23556788888876667777899999999999999
Q ss_pred HHHhcCCCCCH-----hhHHhhhccCHHHHHHHHHHhhcc
Q 010689 227 SALTHGLKFSK-----SDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 227 Aa~~~g~~~t~-----keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
|....+..... ..+..++|+++.+|+.+++.+.+.
T Consensus 225 A~~~l~~~~~w~~~w~~~L~~~tg~~~~~l~~c~~~I~~l 264 (306)
T 3g33_B 225 AVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAA 264 (306)
T ss_dssp HHHTCC---CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCchhhHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99988855432 677899999999999999988753
No 19
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.35 E-value=3.7e-12 Score=120.78 Aligned_cols=92 Identities=16% Similarity=0.222 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCCCCcHHHHHHHhCcChHHHHHH
Q 010689 74 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 153 (504)
Q Consensus 74 a~~~I~~i~~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~~~~p~tL~dIs~~~~vs~~~Lg~~ 153 (504)
...+|.++|+.|+++ ..+.+.|..+++.+...+++.||++..++|||||+|||..|.|++++||+.+++|+..+|++.
T Consensus 108 p~~~i~r~~~~L~l~--~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~~t~~ei~~~~~vs~~ti~~~ 185 (200)
T 1ais_B 108 PTDYVNKFADELGLS--EKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNR 185 (200)
T ss_dssp GGGGHHHHHHHHTCC--HHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHH
Confidence 457899999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccc
Q 010689 154 YLQLCQVLYIADES 167 (504)
Q Consensus 154 ~~~L~~~L~i~~~~ 167 (504)
|+.|.+.|+++.+|
T Consensus 186 ~~~l~~~l~~~~~~ 199 (200)
T 1ais_B 186 YKELVEKLKIKVPI 199 (200)
T ss_dssp HHHHHHHHTCCCCC
T ss_pred HHHHHHHcCCCCCC
Confidence 99999999987654
No 20
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=99.15 E-value=1.9e-11 Score=93.55 Aligned_cols=44 Identities=16% Similarity=0.328 Sum_probs=40.9
Q ss_pred CCCCCCCCCCcccccCCCceecCcCceeeccCcccccccccccC
Q 010689 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNA 45 (504)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vlee~~id~~~~f~~~~ 45 (504)
+.||.||+..+++|+..|++||..||.|+++++||.+|+|+.++
T Consensus 12 ~~Cp~C~~~~lv~D~~~ge~vC~~CGlVl~e~~iD~gpEWR~F~ 55 (58)
T 1dl6_A 12 VTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFS 55 (58)
T ss_dssp CSBTTBSSSCCEECSSSCCEECTTTCCEECCSCCCCCCSCCCSC
T ss_pred ccCcCCCCCceeEeCCCCeEEeCCCCCEEeccccccCCcccccC
Confidence 47999999889999999999999999999999999999998764
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.13 E-value=2.4e-10 Score=108.95 Aligned_cols=92 Identities=14% Similarity=0.128 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCCCCcHHHHHHHhCcChHHHHHH
Q 010689 74 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 153 (504)
Q Consensus 74 a~~~I~~i~~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~~~~p~tL~dIs~~~~vs~~~Lg~~ 153 (504)
....|.++++.|+++ ..+.+.|..+++.+...++..|+++..+||||||+|||..|.|+++.+|+.+++|+..+|+++
T Consensus 102 p~~~l~r~~~~l~l~--~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~~~~~~~i~~~~~v~~~tI~~~ 179 (207)
T 1c9b_A 102 TGDFMSRFCSNLCLP--KQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQS 179 (207)
T ss_dssp THHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSCCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHhCCCHHHHHHH
Confidence 468899999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccc
Q 010689 154 YLQLCQVLYIADES 167 (504)
Q Consensus 154 ~~~L~~~L~i~~~~ 167 (504)
|+.|.+.++...|+
T Consensus 180 ~~~l~~~l~~~~p~ 193 (207)
T 1c9b_A 180 YRLIYPRAPDLFPT 193 (207)
T ss_dssp HHHHGGGHHHHSCS
T ss_pred HHHHHHHHHHhChH
Confidence 99999999876543
No 22
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=98.98 E-value=2.7e-08 Score=97.96 Aligned_cols=177 Identities=9% Similarity=0.015 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcC-CCCcHHHHHHHhC--cChHH
Q 010689 73 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS-KPFLLIDFSNYLN--INVYE 149 (504)
Q Consensus 73 ~a~~~I~~i~~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~~~-~p~tL~dIs~~~~--vs~~~ 149 (504)
...+.|-+++..++++ ..+.-.|..|+.+......++......++++|+|+|++.+. .|.++.++...++ .+..+
T Consensus 51 ~lvdWl~ev~~~~~l~--~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~ 128 (252)
T 1f5q_B 51 VLTTWMFCVCKDLRQD--NNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADK 128 (252)
T ss_dssp HHHHHHHHHHHHTTCC--TTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHH
T ss_pred HHHHHHHHHHHHcCCC--hHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHH
Confidence 4678899999999999 89999999999999987767777788899999999999755 5889999998764 78899
Q ss_pred HHHHHHHHHHHhcccccccccccCCccchHHHHHHhhCCCCCHH----HHHHHHHHHHHhcccccccCCChhHHHHHHHH
Q 010689 150 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK----VCDTARDILASMKRDWITTGRKPSGLCGAALY 225 (504)
Q Consensus 150 Lg~~~~~L~~~L~i~~~~~~~~~~dP~~~I~r~~~~L~~~l~~~----V~~~A~~I~~~~~~~~l~~GR~P~~IAAAaly 225 (504)
|.+.-+.|.+.|+.+..+ +.|..|+.+|...++ .+.+ +...|..++....-+.-..+-+|+.|||||++
T Consensus 129 i~~mE~~IL~~L~w~l~~-----pTp~~FL~~~l~~~~--~~~~~~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~ 201 (252)
T 1f5q_B 129 LLTLEVKSLDTLSWVADR-----CLSTDLICYILHIMH--APREDYLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMH 201 (252)
T ss_dssp HHHHHHHHHHHTTTCCCC-----CCHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCccCC-----CCHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHH
Confidence 999999999999988765 789999999999986 3332 44566666665554555568999999999964
Q ss_pred HHHHhcCCCCC----HhhHHhhhccCHHHHHHHHHHhhc
Q 010689 226 VSALTHGLKFS----KSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 226 lAa~~~g~~~t----~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
++. .+...+ ...+...+|++...++..++.+.+
T Consensus 202 ~~l--~~~~~~~~~~~~~L~~~t~~~~~~l~~C~~~i~~ 238 (252)
T 1f5q_B 202 LTM--NQKYDYYENRIDGVCKSLYITKEELHQCCDLVDI 238 (252)
T ss_dssp HHH--TTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHh--ccCCCchhhHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 443 222222 345677889999988888777653
No 23
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=98.94 E-value=4.6e-10 Score=83.18 Aligned_cols=44 Identities=18% Similarity=0.436 Sum_probs=40.5
Q ss_pred CCCCCCCCCCcccccCCCceecCcCceeeccCcccccccccccC
Q 010689 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNA 45 (504)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vlee~~id~~~~f~~~~ 45 (504)
..||.||+..+++|+..|++||..||.|++++.|+.+++|+.++
T Consensus 6 ~~CP~C~~~~l~~d~~~gelvC~~CG~v~~e~~id~~~ewr~f~ 49 (50)
T 1pft_A 6 KVCPACESAELIYDPERGEIVCAKCGYVIEENIIDMGPEWRAFD 49 (50)
T ss_dssp CSCTTTSCCCEEEETTTTEEEESSSCCBCCCCCCCCCSSSSCCC
T ss_pred EeCcCCCCcceEEcCCCCeEECcccCCcccccccccCCcccccC
Confidence 47999999889999999999999999999999999999998764
No 24
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=98.81 E-value=8.3e-10 Score=100.79 Aligned_cols=42 Identities=24% Similarity=0.431 Sum_probs=38.0
Q ss_pred CCCCCCC--CCcccccCCCceecCcCceeeccCccccccccccc
Q 010689 3 WCSSCAR--HVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKN 44 (504)
Q Consensus 3 ~Cp~Cgs--~~iv~D~~~G~~VC~~CG~Vlee~~id~~~~f~~~ 44 (504)
.||.||+ ..+++|+.+|++||++||.||++++||.+|+|+.+
T Consensus 23 ~CPECGs~~t~IV~D~erGE~VCsdCGLVLEEriID~GPEWRAF 66 (197)
T 3k1f_M 23 TCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTF 66 (197)
T ss_dssp CCTTTCCSSCCEEEEGGGTEEEETTTCBBCCCCCBCHHHHHHHH
T ss_pred ECcCCCCcCCeEEEeCCCCEEEEcCCCCCcCCceeECCCCCcCc
Confidence 7999999 46899999999999999999999999988887754
No 25
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=98.62 E-value=9.1e-08 Score=98.35 Aligned_cols=87 Identities=14% Similarity=0.124 Sum_probs=81.2
Q ss_pred CCccchHHHHHHhhCCCCCHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHHHhcCCCCCHhhHHhhhccCHHHHH
Q 010689 173 VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 252 (504)
Q Consensus 173 ~dP~~~I~r~~~~L~~~l~~~V~~~A~~I~~~~~~~~l~~GR~P~~IAAAalylAa~~~g~~~t~keIa~v~~Vse~TIr 252 (504)
......|.++|+.|+ ++..|..+|..|.+.+....+..||+..+|+|||||+|||.++.++|++||+.+++|+...|.
T Consensus 127 ~~a~~~I~~~~~~L~--Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~prtl~eI~~~~~v~~keig 204 (345)
T 4bbr_M 127 QAAFAKITMLCDAAE--LPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKTKEFG 204 (345)
T ss_dssp THHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCBCCHHHHHHHHTCCTTHHH
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCCHHHHH
Confidence 445568899999998 899999999999999998899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcc
Q 010689 253 KRLIEFENT 261 (504)
Q Consensus 253 kr~kE~~~t 261 (504)
+.|+.|...
T Consensus 205 r~~k~l~~~ 213 (345)
T 4bbr_M 205 KTLNIMKNI 213 (345)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999998764
No 26
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=98.52 E-value=1.1e-08 Score=105.25 Aligned_cols=86 Identities=10% Similarity=0.062 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCCCCcHHHHHHHhCcChHHHHHHH
Q 010689 75 FDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVY 154 (504)
Q Consensus 75 ~~~I~~i~~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~~~~p~tL~dIs~~~~vs~~~Lg~~~ 154 (504)
..+|.++|+.|+|+ ..+...|..|.+.+....++.||++..+||||||+||+..+.+++.++|+.+++|+..+|...|
T Consensus 236 ~~~i~Rf~~~L~l~--~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~~eIa~~~~Vse~TIr~~y 313 (345)
T 3k7a_M 236 LTYIPRFCSHLGLP--MQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGY 313 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 46678999999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc
Q 010689 155 LQLCQVLY 162 (504)
Q Consensus 155 ~~L~~~L~ 162 (504)
+.|...+.
T Consensus 314 kel~~~~~ 321 (345)
T 3k7a_M 314 KILYEHRD 321 (345)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 99988774
No 27
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=97.44 E-value=0.00058 Score=65.87 Aligned_cols=66 Identities=18% Similarity=0.132 Sum_probs=59.6
Q ss_pred chHHHHHHhhCCCCCHHHHHHHHHHHHHhcccccccC-CChhHHHHHHHHHHHHhcCCCCCHhhHHhhh
Q 010689 177 IFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG-RKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244 (504)
Q Consensus 177 ~~I~r~~~~L~~~l~~~V~~~A~~I~~~~~~~~l~~G-R~P~~IAAAalylAa~~~g~~~t~keIa~v~ 244 (504)
++|.+++..|+ +++.+..+|..++++........| ++|..|++||||+||++.+.++++++|+.++
T Consensus 33 ~~i~~v~~~l~--L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~ 99 (235)
T 1zp2_A 33 KVVQTFGDRLR--LRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEA 99 (235)
T ss_dssp HHHHHHHHHTT--CCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcccHHHHHHHH
Confidence 57889999998 899999999999999876666667 9999999999999999999999999999876
No 28
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=96.85 E-value=0.0029 Score=61.87 Aligned_cols=88 Identities=8% Similarity=-0.044 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHcCCCCch-HHHHHHHHHHHHHH-hCcccCCCchhHHHHHHHHHHHHhcCCCCcHHHHHHHhCcChHHHH
Q 010689 74 AFDDMRQMKNALNIGESD-EIVHVAKRFYGIAV-ARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELG 151 (504)
Q Consensus 74 a~~~I~~i~~~L~Lp~~~-~i~e~A~~iyk~a~-~~~~~rGR~~~~vaAACLYiACR~~~~p~tL~dIs~~~~vs~~~Lg 151 (504)
..+.|..++..++++ . .+...|..+...+. +...+-+.++..+||||||+|++..+.|....+++.++|++..+|.
T Consensus 139 p~~fl~~~~~~l~~~--~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~~~w~~~l~~~~g~~~~~i~ 216 (260)
T 2cch_B 139 VNQFLTQYFLHQQPA--NCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQSWPESLIRKTGYTLESLK 216 (260)
T ss_dssp HHHHHHHHHTTCSSC--CHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHSCCSCHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHHcCCC--hHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCCCcchHHHHHHhCcCHHHHH
Confidence 467899999999988 5 78888888888865 3332678999999999999999998878888899999999999999
Q ss_pred HHHHHHHHHhcc
Q 010689 152 AVYLQLCQVLYI 163 (504)
Q Consensus 152 ~~~~~L~~~L~i 163 (504)
.+++.|...+..
T Consensus 217 ~~~~~l~~~~~~ 228 (260)
T 2cch_B 217 PCLMDLHQTYLK 228 (260)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999987743
No 29
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=96.83 E-value=0.0018 Score=63.72 Aligned_cols=87 Identities=15% Similarity=0.086 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCCCCcHHHHHHHhCcChHHHHHH
Q 010689 74 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 153 (504)
Q Consensus 74 a~~~I~~i~~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~~~~p~tL~dIs~~~~vs~~~Lg~~ 153 (504)
..+.|.+++..++++ ..+...|..+...+.....+-|.++..+||||||+|++..+.+....++..++|++..+|..+
T Consensus 138 p~~fl~~~~~~~~~~--~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~~w~~~l~~~tg~~~~~l~~~ 215 (269)
T 2b9r_A 138 PLHFLRRASKIGEVD--VEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNGEWTPTLQHYLSYTEESLLPV 215 (269)
T ss_dssp HHHHHHHHHHSSCCC--HHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCCCSCTTHHHHSCCCSSTTTTH
T ss_pred HHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHCCCHHHHHHH
Confidence 457788999999998 888888999988887666677899999999999999999988877888999999999999999
Q ss_pred HHHHHHHhc
Q 010689 154 YLQLCQVLY 162 (504)
Q Consensus 154 ~~~L~~~L~ 162 (504)
++.|.+.+.
T Consensus 216 ~~~l~~~~~ 224 (269)
T 2b9r_A 216 MQHLAKNVV 224 (269)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988764
No 30
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=96.70 E-value=0.0055 Score=59.61 Aligned_cols=68 Identities=15% Similarity=0.139 Sum_probs=61.6
Q ss_pred chHHHHHHhhCCCCCHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHHHhcCCCCCHhhHHhhhcc
Q 010689 177 IFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 246 (504)
Q Consensus 177 ~~I~r~~~~L~~~l~~~V~~~A~~I~~~~~~~~l~~GR~P~~IAAAalylAa~~~g~~~t~keIa~v~~V 246 (504)
++|.+++..|+ +++.+..+|..++++........+++|..|++||||+||+..+.++++++|+.+++.
T Consensus 36 ~~i~~v~~~l~--l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~p~~l~d~~~~~~~ 103 (257)
T 2ivx_A 36 NLIQEMGQRLN--VSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHA 103 (257)
T ss_dssp HHHHHHHHHTT--CCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHcC--CcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccCCcCHHHHHHHHHH
Confidence 57888999998 899999999999999887777889999999999999999999999999999877643
No 31
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=96.68 E-value=0.0059 Score=59.35 Aligned_cols=67 Identities=12% Similarity=-0.023 Sum_probs=60.7
Q ss_pred chHHHHHHhhCCCCCHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHHHhcCCCCCHhhHHhhhc
Q 010689 177 IFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245 (504)
Q Consensus 177 ~~I~r~~~~L~~~l~~~V~~~A~~I~~~~~~~~l~~GR~P~~IAAAalylAa~~~g~~~t~keIa~v~~ 245 (504)
++|.+++..|+ +++.+..+|..++++........++++.-|++||||+||++.+.+++.++|+.+++
T Consensus 46 ~~i~~v~~~l~--l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE~~~~l~d~~~~~~ 112 (258)
T 2i53_A 46 RFIFDVGTRLG--LHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTAR 112 (258)
T ss_dssp HHHHHHHHHTT--CCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHcC--CChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHccccccccHHHHHHHHH
Confidence 57888999998 89999999999999987766788999999999999999999999999999988754
No 32
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=96.63 E-value=0.02 Score=53.67 Aligned_cols=88 Identities=15% Similarity=0.279 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHhCcccCCCc---hhHHHHHHHHHHHHhcCCCCcHHHHHHHhCcChHHH
Q 010689 74 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRR---TEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYEL 150 (504)
Q Consensus 74 a~~~I~~i~~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rGR~---~~~vaAACLYiACR~~~~p~tL~dIs~~~~vs~~~L 150 (504)
....|..+-.+-++| +.|.+.|..+.+.++...--+|.+ ...|+|||+.+|..+.+.|+++.|+--. .-+..++
T Consensus 15 M~nclr~L~kKs~~~--eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~PiplaE~r~l-D~sL~Dv 91 (260)
T 3h4c_A 15 MLNCMRGLHKKAVLP--EPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQPLPLAEVRCL-DSSLGDV 91 (260)
T ss_dssp HHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHH-CTTCCCH
T ss_pred HHHHHHHHHhhccCc--HHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCCCccHHHHHHH-hhhhhHH
Confidence 456778888889999 999999999999998755555644 5679999999999999999999987543 2222233
Q ss_pred HHHHHHHHHHhccc
Q 010689 151 GAVYLQLCQVLYIA 164 (504)
Q Consensus 151 g~~~~~L~~~L~i~ 164 (504)
.-.-..|.+.+++.
T Consensus 92 elrr~Eiv~~l~l~ 105 (260)
T 3h4c_A 92 ELRRADIVRELHLE 105 (260)
T ss_dssp HHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHccCC
Confidence 33334555555553
No 33
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=96.61 E-value=0.0098 Score=60.18 Aligned_cols=71 Identities=13% Similarity=0.086 Sum_probs=61.7
Q ss_pred chHHHHHHhhCCCCCHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHHHhcCCCCCHhhHHhhhccC
Q 010689 177 IFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 247 (504)
Q Consensus 177 ~~I~r~~~~L~~~l~~~V~~~A~~I~~~~~~~~l~~GR~P~~IAAAalylAa~~~g~~~t~keIa~v~~Vs 247 (504)
.+|.+++..|.+.+++.+..+|..++++.-......+++|..|++||||+||++.+.++++++|+.++...
T Consensus 62 ~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~~~~~ 132 (323)
T 1jkw_A 62 KRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRES 132 (323)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGGSSSC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHHhccC
Confidence 35777888886447899999999999999877778899999999999999999999999999998876544
No 34
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=96.48 E-value=0.0068 Score=59.57 Aligned_cols=90 Identities=14% Similarity=0.019 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHcCCCCchHHH----HHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCC---------CCcHHHHH
Q 010689 74 AFDDMRQMKNALNIGESDEIV----HVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK---------PFLLIDFS 140 (504)
Q Consensus 74 a~~~I~~i~~~L~Lp~~~~i~----e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~~~~---------p~tL~dIs 140 (504)
.++.|..++..++++ .... ..|..+...+.....+-+.++..+||||||+|++..+. +.+..+++
T Consensus 157 p~~fl~~~~~~l~~~--~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~ 234 (271)
T 2w96_A 157 PHDFIEHFLSKMPEA--EENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLS 234 (271)
T ss_dssp HHHHHHHHHHTSCCC--HHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHH
T ss_pred HHHHHHHHHHHcCCC--chHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHH
Confidence 567788999999998 5543 45667776665433345789999999999999987543 23467899
Q ss_pred HHhCcChHHHHHHHHHHHHHhcccc
Q 010689 141 NYLNINVYELGAVYLQLCQVLYIAD 165 (504)
Q Consensus 141 ~~~~vs~~~Lg~~~~~L~~~L~i~~ 165 (504)
.++|++..+|..+++.|.+.+....
T Consensus 235 ~~~~v~~~~l~~c~~~i~~l~~~~~ 259 (271)
T 2w96_A 235 RVIKCDPDCLRACQEQIEALLESSL 259 (271)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHTTTT
T ss_pred HHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998654
No 35
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=96.40 E-value=0.017 Score=47.95 Aligned_cols=80 Identities=11% Similarity=0.074 Sum_probs=63.2
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHHHHhCcccCC------CchhHHHHHHHHHHHHhcCCCCcHHHHHHHhCcChHHHH
Q 010689 78 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKG------RRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELG 151 (504)
Q Consensus 78 I~~i~~~L~Lp~~~~i~e~A~~iyk~a~~~~~~rG------R~~~~vaAACLYiACR~~~~p~tL~dIs~~~~vs~~~Lg 151 (504)
|+++|-+||.+ .+++.|.+++.+.... +..+ -+....+||++|.+||..+....-.-+....+++...+.
T Consensus 6 v~dLcVqfgc~---e~~~~a~~lL~~Yk~~-l~~~~~~~~D~s~P~f~aaA~~~acr~~K~kVdK~KL~~~s~lk~~~f~ 81 (95)
T 3m03_A 6 IRDLAVQFSCI---EAVNMASKILKSYESS-LPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMVATSGVKKAIFD 81 (95)
T ss_dssp HHHHHHHHTCG---GGHHHHHHHHHHHHTT-SCHHHHHHCCTTSHHHHHHHHHHHHHHTTCCCCHHHHHHTTCBCHHHHH
T ss_pred HHHHHHHhCCH---HHHHHHHHHHHHHHHH-hHHHhhccccccccHHHHHHHHHHHHHHccCCCHHHHHHHHCCCHHHHH
Confidence 78899999999 5888888888877532 3212 123478999999999999999999999999999998877
Q ss_pred HHHHHHHHHh
Q 010689 152 AVYLQLCQVL 161 (504)
Q Consensus 152 ~~~~~L~~~L 161 (504)
+...++.+..
T Consensus 82 ~l~~~~e~~~ 91 (95)
T 3m03_A 82 RLCKQLEKIG 91 (95)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7766665544
No 36
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=96.37 E-value=0.013 Score=58.04 Aligned_cols=66 Identities=9% Similarity=0.164 Sum_probs=59.0
Q ss_pred chHHHHHHhhCCCCCHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHHHhcCCCC-CHhhHHhhh
Q 010689 177 IFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKF-SKSDIVKIV 244 (504)
Q Consensus 177 ~~I~r~~~~L~~~l~~~V~~~A~~I~~~~~~~~l~~GR~P~~IAAAalylAa~~~g~~~-t~keIa~v~ 244 (504)
++|.+++..|+ +++.+..+|..++++.-......+++|..|++||||+||+..+..+ ++++|+.++
T Consensus 48 ~~I~~v~~~l~--L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~ 114 (285)
T 3rgf_B 48 NVIQALGEHLK--LRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAA 114 (285)
T ss_dssp HHHHHHHHHTT--CCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHH
T ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHH
Confidence 57888999998 8999999999999998877778899999999999999999998876 688887665
No 37
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=96.26 E-value=0.007 Score=62.20 Aligned_cols=68 Identities=18% Similarity=0.128 Sum_probs=61.0
Q ss_pred cchHHHHHHhhCCCCCHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHHHhcCCCCCHhhHHhhhc
Q 010689 176 SIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 245 (504)
Q Consensus 176 ~~~I~r~~~~L~~~l~~~V~~~A~~I~~~~~~~~l~~GR~P~~IAAAalylAa~~~g~~~t~keIa~v~~ 245 (504)
.++|.+++..|. ++..+..+|..|++++.......+++|.-|++|||||||++.+.++++++|+.+++
T Consensus 42 v~wI~ev~~~l~--L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~p~~l~d~v~v~~ 109 (358)
T 2pk2_A 42 ANLLQDMGQRLN--VSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAH 109 (358)
T ss_dssp HHHHHHHHTTTT--CCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHTTHH
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHH
Confidence 357888999998 89999999999999988777788999999999999999999999999999987664
No 38
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=96.17 E-value=0.019 Score=55.87 Aligned_cols=86 Identities=19% Similarity=0.108 Sum_probs=67.9
Q ss_pred HHHHHHHHHHcCCCCchHH----HHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhc-CCCCc----HHHHHHHhCc
Q 010689 75 FDDMRQMKNALNIGESDEI----VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFL----LIDFSNYLNI 145 (504)
Q Consensus 75 ~~~I~~i~~~L~Lp~~~~i----~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~~-~~p~t----L~dIs~~~~v 145 (504)
.+.|..++..++++ ... ...|..+...+.-...+-+.++..+||||+|+|.+.. +.|.+ ...++.++|+
T Consensus 153 ~~fl~~~~~~~~~~--~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~tg~ 230 (254)
T 2f2c_A 153 TDFLIPLCNALKIP--EDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSILNF 230 (254)
T ss_dssp GGSHHHHHHHTTCC--GGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCC--hhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHCc
Confidence 45688889999988 443 4456767666654444567899999999999999986 45565 7889999999
Q ss_pred ChHHHHHHHHHHHHHhc
Q 010689 146 NVYELGAVYLQLCQVLY 162 (504)
Q Consensus 146 s~~~Lg~~~~~L~~~L~ 162 (504)
+..+|..+++.|.+.+.
T Consensus 231 ~~~~l~~c~~~i~~~~~ 247 (254)
T 2f2c_A 231 STNTVRTVKDQVSEAFS 247 (254)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999988874
No 39
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=95.93 E-value=0.02 Score=55.74 Aligned_cols=90 Identities=17% Similarity=0.030 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHcCCCCc--hHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCC------CCcHHHHHHHhCc
Q 010689 74 AFDDMRQMKNALNIGES--DEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK------PFLLIDFSNYLNI 145 (504)
Q Consensus 74 a~~~I~~i~~~L~Lp~~--~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~~~~------p~tL~dIs~~~~v 145 (504)
..+.|..++..++++.. ..+...|..+...+.-...+-+.++..+||||||+|++..+. +.....++.++|+
T Consensus 151 p~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t~~ 230 (257)
T 1g3n_C 151 ATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASILGC 230 (257)
T ss_dssp HHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHHCc
Confidence 56788899999998831 113455777776665444456789999999999999998875 3567889999999
Q ss_pred ChHHHHHHHHHHHHHhcc
Q 010689 146 NVYELGAVYLQLCQVLYI 163 (504)
Q Consensus 146 s~~~Lg~~~~~L~~~L~i 163 (504)
+..+|..+++.|.+.+.-
T Consensus 231 ~~~~l~~c~~~i~~l~~~ 248 (257)
T 1g3n_C 231 DVSVLQAAVEQILTSVSD 248 (257)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999988753
No 40
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=95.67 E-value=0.0035 Score=48.27 Aligned_cols=47 Identities=15% Similarity=0.449 Sum_probs=37.4
Q ss_pred CCCCCCCCCCcccccCCCceecCcCceeeccCcccccccccccCCCCccccCcccccc
Q 010689 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNAAGQSQLSGNFVRTI 59 (504)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vlee~~id~~~~f~~~~~G~s~v~G~~v~~~ 59 (504)
++||.|+...+++++++-.+.|..||.||-.. .+|.++..|..+..+
T Consensus 8 VKCp~C~niq~VFShA~tvV~C~~Cg~~L~~P-----------TGGKA~l~~~i~e~l 54 (66)
T 1qxf_A 8 VKCPDCEHEQVIFDHPSTIVKCIICGRTVAEP-----------TGGKGNIKAEIIEYV 54 (66)
T ss_dssp EECTTTCCEEEEESSCSSCEECSSSCCEEEEC-----------CSSSCEECSEEEECC
T ss_pred EECCCCCCceEEEecCceEEEcccCCCEEeec-----------CCcceeeehhHHhhh
Confidence 58999999999999999999999999999642 145566666665544
No 41
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=95.40 E-value=0.036 Score=57.66 Aligned_cols=73 Identities=12% Similarity=0.209 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHhC--cccCCCchhHHHHHHHHHHHHhcCCCCcHHHHHHHhCc
Q 010689 72 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVAR--NFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI 145 (504)
Q Consensus 72 ~~a~~~I~~i~~~L~Lp~~~~i~e~A~~iyk~a~~~--~~~rGR~~~~vaAACLYiACR~~~~p~tL~dIs~~~~v 145 (504)
.-|..+|+.+|..|+++. ..+.+....+|...+.. .++++|..++++-+|+|..||..+..++++||-....-
T Consensus 280 ~LAa~Rl~~LC~~L~~~~-~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~~tFk~Ii~~Yr~ 354 (411)
T 4ell_A 280 RLAYLRLNTLCERLLSEH-PELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKD 354 (411)
T ss_dssp HHHHHHHHHHHHHHCTTS-TTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHHh
Confidence 447889999999999872 36777888888887653 67899999999999999999999999999999987643
No 42
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=95.38 E-value=0.0049 Score=47.12 Aligned_cols=31 Identities=23% Similarity=0.461 Sum_probs=28.8
Q ss_pred CCCCCCCCCCcccccCCCceecCcCceeecc
Q 010689 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLED 32 (504)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vlee 32 (504)
++||.|+...+++.+++-.+.|..||.||-.
T Consensus 16 VkCp~C~~~q~VFSha~t~V~C~~Cgt~L~~ 46 (63)
T 3j20_W 16 VKCIDCGNEQIVFSHPATKVRCLICGATLVE 46 (63)
T ss_dssp EECSSSCCEEEEESSCSSCEECSSSCCEEEE
T ss_pred EECCCCCCeeEEEecCCeEEEccCcCCEEec
Confidence 4799999999999999999999999999964
No 43
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=95.16 E-value=0.0062 Score=48.83 Aligned_cols=31 Identities=23% Similarity=0.537 Sum_probs=28.8
Q ss_pred CCCCCCCCCCcccccCCCceecCcCceeecc
Q 010689 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLED 32 (504)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vlee 32 (504)
+.||.|+...+++++++-.+.|..||.||-.
T Consensus 33 VkCp~C~n~q~VFShA~t~V~C~~Cg~~L~~ 63 (81)
T 2xzm_6 33 VKCAQCQNIQMIFSNAQSTIICEKCSAILCK 63 (81)
T ss_dssp EECSSSCCEEEEETTCSSCEECSSSCCEEEE
T ss_pred eECCCCCCeeEEEecCccEEEccCCCCEEee
Confidence 5799999999999999999999999999864
No 44
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=95.11 E-value=0.11 Score=51.30 Aligned_cols=96 Identities=8% Similarity=0.037 Sum_probs=75.3
Q ss_pred chHHHHHHhhCCCCCHHHHHHHHHHHHHhccc-ccccCCChhHHHHHHHHHHHHhcCC-CCCHhhHHhhhc--cCHHHHH
Q 010689 177 IFLHKFTDRLLPGGNKKVCDTARDILASMKRD-WITTGRKPSGLCGAALYVSALTHGL-KFSKSDIVKIVH--ICEATLM 252 (504)
Q Consensus 177 ~~I~r~~~~L~~~l~~~V~~~A~~I~~~~~~~-~l~~GR~P~~IAAAalylAa~~~g~-~~t~keIa~v~~--Vse~TIr 252 (504)
++|...+..+. +++++.-.|..+++++... ....++++..+++||+|+||++.+. .++.++++.+++ .+...|.
T Consensus 55 ~wl~~v~~~~~--l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~ 132 (283)
T 1w98_B 55 DWLMEVCEVYK--LHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEIL 132 (283)
T ss_dssp HHHHHHHHHTT--CBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHH
T ss_pred HHHHHHHHHhC--CCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHH
Confidence 45667777777 8999999999999998765 3568899999999999999999876 678999998774 6777888
Q ss_pred HHHHHhhccCC---CCCChHHHHHH
Q 010689 253 KRLIEFENTDS---GSLTIEDFMAR 274 (504)
Q Consensus 253 kr~kE~~~t~~---~~lt~~~~~~~ 274 (504)
+-.+.+..+-. ..-|+-+|...
T Consensus 133 ~mE~~IL~~L~~~l~~~tp~~fL~~ 157 (283)
T 1w98_B 133 TMELMIMKALKWRLSPLTIVSWLNV 157 (283)
T ss_dssp HHHHHHHHHTTTCCCCCCHHHHHHH
T ss_pred HHHHHHHHHcCCcCCCCCHHHHHHH
Confidence 77666665533 34467777654
No 45
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=94.99 E-value=0.07 Score=54.40 Aligned_cols=74 Identities=12% Similarity=0.221 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHh--CcccCCCchhHHHHHHHHHHHHhcCCCCcHHHHHHHhC
Q 010689 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVA--RNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLN 144 (504)
Q Consensus 70 ~L~~a~~~I~~i~~~L~Lp~~~~i~e~A~~iyk~a~~--~~~~rGR~~~~vaAACLYiACR~~~~p~tL~dIs~~~~ 144 (504)
.+.-|..+|+.+|..|+++. ..+.+.+..+|..+.. -.++++|..++++-+|+|+.||..+...++++|-....
T Consensus 214 vy~La~~Rl~~LC~~L~~~~-~~~~~~iWt~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~~tF~~Ii~~Yr 289 (347)
T 2r7g_A 214 VYRLAYLRLNTLCERLLSEH-PELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYK 289 (347)
T ss_dssp HHHHHHHHHHHHHHHHCTTC-TTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHHHHhChHhhcCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 34447788999999999872 3577788888888765 35789999999999999999999999999999998754
No 46
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=94.87 E-value=0.0077 Score=48.34 Aligned_cols=31 Identities=23% Similarity=0.536 Sum_probs=28.8
Q ss_pred CCCCCCCCCCcccccCCCceecCcCceeecc
Q 010689 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLED 32 (504)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vlee 32 (504)
+.||.|+...+++.+++-.+.|..||.||-.
T Consensus 35 VkCp~C~~~q~VFSha~t~V~C~~Cg~~L~~ 65 (82)
T 3u5c_b 35 VKCPGCLNITTVFSHAQTAVTCESCSTILCT 65 (82)
T ss_dssp EECTTSCSCEEEESBCSSCCCCSSSCCCCEE
T ss_pred EECCCCCCeeEEEecCCeEEEccccCCEEec
Confidence 5799999999999999999999999999864
No 47
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=94.62 E-value=0.11 Score=52.01 Aligned_cols=89 Identities=11% Similarity=0.002 Sum_probs=66.2
Q ss_pred HHHHHHHHHHcCCCCc--hHHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCCC-Cc----HHHHHHHhCcCh
Q 010689 75 FDDMRQMKNALNIGES--DEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP-FL----LIDFSNYLNINV 147 (504)
Q Consensus 75 ~~~I~~i~~~L~Lp~~--~~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~~~~p-~t----L~dIs~~~~vs~ 147 (504)
+..|..+...++++.. ..+...|..|.....-...+-+.++..+||||||+|++..+.. .. ...++.++|++.
T Consensus 172 ~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg~~~ 251 (306)
T 3g33_B 172 HDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEV 251 (306)
T ss_dssp GGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHCCCH
Confidence 4568888888888731 1244567777776655555567889999999999999987643 22 367788899999
Q ss_pred HHHHHHHHHHHHHhcc
Q 010689 148 YELGAVYLQLCQVLYI 163 (504)
Q Consensus 148 ~~Lg~~~~~L~~~L~i 163 (504)
..|..++..|...+.-
T Consensus 252 ~~l~~c~~~I~~l~~~ 267 (306)
T 3g33_B 252 DCLRACQEQIEAALRE 267 (306)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988864
No 48
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=94.62 E-value=0.08 Score=58.14 Aligned_cols=74 Identities=12% Similarity=0.230 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHhC--cccCCCchhHHHHHHHHHHHHhcCCCCcHHHHHHHhC
Q 010689 70 LMEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVAR--NFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLN 144 (504)
Q Consensus 70 ~L~~a~~~I~~i~~~L~Lp~~~~i~e~A~~iyk~a~~~--~~~rGR~~~~vaAACLYiACR~~~~p~tL~dIs~~~~ 144 (504)
.+.-|..+|+.+|..|+++. ..+.+.+..+|...... .++++|..++++-+|+|..||..+..+++++|-....
T Consensus 523 vy~LAa~Rl~~LC~~L~~~~-~~i~~~IWt~fe~~l~~~t~L~~dRHLDQiilCsiY~icKv~~~~ltFk~Ii~~Yr 598 (656)
T 4elj_A 523 VYRLAYLRLNTLCERLLSEH-PELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYK 598 (656)
T ss_dssp HHHHHHHHHHHHHHHHCTTC-THHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCc-hHHHHHHHHHHHHHHHhhHHHHhcchHHHHHHHHHHHHHHhccCCcCHHHHHHHHH
Confidence 33457899999999998772 46788888888888753 5789999999999999999999999999999988654
No 49
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=94.52 E-value=0.0087 Score=48.43 Aligned_cols=31 Identities=26% Similarity=0.470 Sum_probs=28.9
Q ss_pred CCCCCCCCCCcccccCCCceecCcCceeecc
Q 010689 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLED 32 (504)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vlee 32 (504)
+.||.|+...+++.+++-.+.|..||.||-.
T Consensus 37 VkCp~C~~~~~VFShA~t~V~C~~CgtvL~~ 67 (86)
T 3iz6_X 37 VKCQGCFNITTVFSHSQTVVVCPGCQTVLCQ 67 (86)
T ss_dssp EECTTTCCEEEEETTCSSCCCCSSSCCCCSC
T ss_pred EECCCCCCeeEEEecCCcEEEccCCCCEeec
Confidence 5799999999999999999999999999964
No 50
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=94.38 E-value=0.02 Score=44.90 Aligned_cols=28 Identities=14% Similarity=0.401 Sum_probs=24.0
Q ss_pred CCCCCCCCCCcccccCCCceecCcCceee
Q 010689 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVL 30 (504)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vl 30 (504)
..||.|++. +.++...|.++|..||.+.
T Consensus 9 L~CP~ck~~-L~~~~~~~~LiC~~cg~~Y 36 (70)
T 2js4_A 9 LVCPVCKGR-LEFQRAQAELVCNADRLAF 36 (70)
T ss_dssp CBCTTTCCB-EEEETTTTEEEETTTTEEE
T ss_pred eECCCCCCc-CEEeCCCCEEEcCCCCcee
Confidence 589999985 6677778999999999975
No 51
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=94.30 E-value=0.023 Score=44.23 Aligned_cols=28 Identities=11% Similarity=0.040 Sum_probs=24.1
Q ss_pred CCCCCCCCCCcccccCCCceecCcCceee
Q 010689 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVL 30 (504)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vl 30 (504)
..||.|++. +.++...|.++|..||.+.
T Consensus 11 L~CP~ck~~-L~~~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 11 LACPKDKGP-LRYLESEQLLVNERLNLAY 38 (67)
T ss_dssp CBCTTTCCB-CEEETTTTEEEETTTTEEE
T ss_pred hCCCCCCCc-CeEeCCCCEEEcCCCCccc
Confidence 479999984 6777778999999999875
No 52
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=94.30 E-value=0.14 Score=51.23 Aligned_cols=77 Identities=14% Similarity=0.255 Sum_probs=58.3
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHHHHhC-c---ccCCCchhHHHHHHHHHHHHh-cCCCCcHHHHHHHhCcChHHHH
Q 010689 77 DMRQMKNALNIGESDEIVHVAKRFYGIAVAR-N---FTKGRRTEQVQASCLYLACRQ-KSKPFLLIDFSNYLNINVYELG 151 (504)
Q Consensus 77 ~I~~i~~~L~Lp~~~~i~e~A~~iyk~a~~~-~---~~rGR~~~~vaAACLYiACR~-~~~p~tL~dIs~~~~vs~~~Lg 151 (504)
+...+|..|+|+ ..+.+.|..+|+.+... + .+-|... ....||||+||.. ++..++|-.|-..+++++.+.
T Consensus 5 rF~~lC~~Lnld--~~~~~~Aw~~~~~~~~~~~~~~~~~~~~~-~~w~acLY~a~~~~~~n~vsLt~LLr~~~lsi~~F- 80 (304)
T 2qdj_A 5 DFTALCQKLKIP--DHVRERAWLTWEKVSSVDGVLGGYIQKKK-ELWGICIFIAAVDLDEMSFTFTELQKNIEISVHKF- 80 (304)
T ss_dssp HHHHHHHHTTCC--HHHHHHHHHHHHHHHC----------CHH-HHHHHHHHHHHHHHTCCCSCHHHHHHHHTCCHHHH-
T ss_pred HHHHHHHHcCCC--HHHHHHHHHHHHHHhccccccCCCccchH-HHHHHhHHHHhhccCCCcCcHHHHHHHcCCCHHHH-
Confidence 457889999999 99999999999998774 2 3344444 4555559999975 788899999999999998776
Q ss_pred HHHHHHHH
Q 010689 152 AVYLQLCQ 159 (504)
Q Consensus 152 ~~~~~L~~ 159 (504)
|+++.+
T Consensus 81 --f~k~~~ 86 (304)
T 2qdj_A 81 --FNLLKE 86 (304)
T ss_dssp --HHHHTT
T ss_pred --HHHHHH
Confidence 455544
No 53
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=94.22 E-value=0.025 Score=44.26 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=23.8
Q ss_pred CCCCCCCCCCcccccCCCceecCcCceee
Q 010689 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVL 30 (504)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vl 30 (504)
..||.|++. +.++...|.++|..||.+.
T Consensus 9 L~CP~ck~~-L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 9 LACPICKGP-LKLSADKTELISKGAGLAY 36 (69)
T ss_dssp CCCTTTCCC-CEECTTSSEEEETTTTEEE
T ss_pred eeCCCCCCc-CeEeCCCCEEEcCCCCcEe
Confidence 589999976 5667678999999999975
No 54
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=94.05 E-value=0.025 Score=44.16 Aligned_cols=28 Identities=7% Similarity=0.076 Sum_probs=23.8
Q ss_pred CCCCCCCCCCcccccCCCceecCcCceee
Q 010689 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVL 30 (504)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vl 30 (504)
..||.|++. +.++...|.++|..||.+.
T Consensus 9 L~CP~ck~~-L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 9 LVCPVTKGR-LEYHQDKQELWSRQAKLAY 36 (68)
T ss_dssp CBCSSSCCB-CEEETTTTEEEETTTTEEE
T ss_pred eECCCCCCc-CeEeCCCCEEEcCCCCcEe
Confidence 589999975 6677778999999999975
No 55
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=94.02 E-value=0.02 Score=46.47 Aligned_cols=32 Identities=16% Similarity=0.412 Sum_probs=27.2
Q ss_pred CCCCCCCCCcccccCCCceecCcCceeeccCcc
Q 010689 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNF 35 (504)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vlee~~i 35 (504)
.||.||.. .++++..|.+.|..||.+......
T Consensus 29 ~Cp~CG~~-~v~r~atGiW~C~~Cg~~~aggay 60 (83)
T 1vq8_Z 29 ACPNCGED-RVDRQGTGIWQCSYCDYKFTGGSY 60 (83)
T ss_dssp ECSSSCCE-EEEEEETTEEEETTTCCEEECCSS
T ss_pred cCCCCCCc-ceeccCCCeEECCCCCCEecCCEe
Confidence 59999974 678999999999999999875543
No 56
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=93.81 E-value=0.029 Score=43.81 Aligned_cols=28 Identities=14% Similarity=0.274 Sum_probs=23.8
Q ss_pred CCCCCCCCCCcccccCCCceecCcCceee
Q 010689 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVL 30 (504)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vl 30 (504)
..||.|++. +.++...|.++|..||.+.
T Consensus 9 L~CP~ck~~-L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 9 LVCPLCKGP-LVFDKSKDELICKGDRLAF 36 (68)
T ss_dssp CBCTTTCCB-CEEETTTTEEEETTTTEEE
T ss_pred eECCCCCCc-CeEeCCCCEEEcCCCCcEe
Confidence 479999975 6677778999999999975
No 57
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=92.67 E-value=0.056 Score=39.57 Aligned_cols=27 Identities=22% Similarity=0.603 Sum_probs=21.6
Q ss_pred CCCCCCCCCcccccCCCceecCcCceee
Q 010689 3 WCSSCARHVTGHRPYDSQLCCDRCGKVL 30 (504)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vl 30 (504)
.||.||+..+..+ ..+-.+|..||.+.
T Consensus 21 ~CP~CG~~~fm~~-~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 21 FCPRCGPGVFMAD-HGDRWACGKCGYTE 47 (50)
T ss_dssp ECSSSCSSCEEEE-CSSEEECSSSCCEE
T ss_pred cCCCCCCceEEec-CCCeEECCCCCCEE
Confidence 6999999765554 35889999999874
No 58
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=91.52 E-value=0.094 Score=39.12 Aligned_cols=28 Identities=25% Similarity=0.585 Sum_probs=21.6
Q ss_pred CCCCCCCCCCCcccccCCCceecCcCcee
Q 010689 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKV 29 (504)
Q Consensus 1 m~~Cp~Cgs~~iv~D~~~G~~VC~~CG~V 29 (504)
|..||.||+..+.. ...+...|..||..
T Consensus 18 ~~fCPkCG~~~~ma-~~~dr~~C~kCgyt 45 (55)
T 2k4x_A 18 HRFCPRCGPGVFLA-EHADRYSCGRCGYT 45 (55)
T ss_dssp SCCCTTTTTTCCCE-ECSSEEECTTTCCC
T ss_pred cccCcCCCCceeEe-ccCCEEECCCCCCE
Confidence 45799999975433 34579999999997
No 59
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=91.07 E-value=1.1 Score=37.14 Aligned_cols=76 Identities=18% Similarity=0.217 Sum_probs=55.3
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHhccccc-------ccCCChhHHHHHHHHHHHHhcCCCCCHhhHHhhhccCHHHH
Q 010689 179 LHKFTDRLLPGGNKKVCDTARDILASMKRDWI-------TTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 251 (504)
Q Consensus 179 I~r~~~~L~~~l~~~V~~~A~~I~~~~~~~~l-------~~GR~P~~IAAAalylAa~~~g~~~t~keIa~v~~Vse~TI 251 (504)
|.-+|-.|+ .+ +++..|.+|++..+.. + ..-.+|. .++||+|.||+.+.++++...+...+|+++.-.
T Consensus 6 v~dLcVqfg--c~-e~~~~a~~lL~~Yk~~-l~~~~~~~~D~s~P~-f~aaA~~~acr~~K~kVdK~KL~~~s~lk~~~f 80 (95)
T 3m03_A 6 IRDLAVQFS--CI-EAVNMASKILKSYESS-LPQTQQVDLDLSRPL-FTSAALLSACKILKLKVDKNKMVATSGVKKAIF 80 (95)
T ss_dssp HHHHHHHHT--CG-GGHHHHHHHHHHHHTT-SCHHHHHHCCTTSHH-HHHHHHHHHHHHTTCCCCHHHHHHTTCBCHHHH
T ss_pred HHHHHHHhC--CH-HHHHHHHHHHHHHHHH-hHHHhhccccccccH-HHHHHHHHHHHHHccCCCHHHHHHHHCCCHHHH
Confidence 455677775 33 4778888888887642 2 1335676 566799999999999999999999999998866
Q ss_pred HHHHHHhh
Q 010689 252 MKRLIEFE 259 (504)
Q Consensus 252 rkr~kE~~ 259 (504)
.+-...+.
T Consensus 81 ~~l~~~~e 88 (95)
T 3m03_A 81 DRLCKQLE 88 (95)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65555443
No 60
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=90.82 E-value=0.89 Score=49.91 Aligned_cols=77 Identities=14% Similarity=0.159 Sum_probs=61.0
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHHHHhCc----c-cCCCchhHHHHHHHHHHHHhcCCCCcHHHHHHHhCcChHHHH
Q 010689 77 DMRQMKNALNIGESDEIVHVAKRFYGIAVARN----F-TKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELG 151 (504)
Q Consensus 77 ~I~~i~~~L~Lp~~~~i~e~A~~iyk~a~~~~----~-~rGR~~~~vaAACLYiACR~~~~p~tL~dIs~~~~vs~~~Lg 151 (504)
+...+|..|+++ +.+.+.|...|......+ . +.| ...++.|+.+|.||+.+|..++|-.|-...++++.+.
T Consensus 7 ~f~~lC~~Ln~d--~~~~~~Aw~~~~~~~~~~~~l~~tleg-~~~~W~aC~ly~~~~~~gn~vsLt~lLr~~~lsl~~F- 82 (656)
T 4elj_A 7 DFTALCQKLKIP--DHVRERAWLTWEKVSSVDGVLGGYIQK-KKELWGICIFIAAVDLDEMSFTFTELQKNIEISVHKF- 82 (656)
T ss_dssp HHHHHHHHTTCC--HHHHHHHHHHHHHHHHHCSCC-----C-CHHHHHHHHHHHHHHTTCCCSCHHHHHHHHTCCHHHH-
T ss_pred HHHHHHHHhCCC--HHHHHHHHHHHHHHHhccccccCCccc-chHHhhhhhheeeeeccCCeeeHHHHHHHhcCCHHHH-
Confidence 467899999999 999999999999998421 1 233 3457777778888888999999999999999998776
Q ss_pred HHHHHHHH
Q 010689 152 AVYLQLCQ 159 (504)
Q Consensus 152 ~~~~~L~~ 159 (504)
|.++.+
T Consensus 83 --F~kikk 88 (656)
T 4elj_A 83 --FNLLKE 88 (656)
T ss_dssp --HHHHHH
T ss_pred --HHHhHh
Confidence 556665
No 61
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=88.91 E-value=0.25 Score=39.27 Aligned_cols=29 Identities=14% Similarity=0.162 Sum_probs=27.2
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
|.++|+.|||+.+|||..||++-|+.+.+
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~~Le~ 50 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLEQLHD 50 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 78999999999999999999999998875
No 62
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=86.10 E-value=0.9 Score=39.53 Aligned_cols=28 Identities=21% Similarity=0.468 Sum_probs=21.5
Q ss_pred CCCCCCCCCCcccccCCCceecCcCceeec
Q 010689 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLE 31 (504)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vle 31 (504)
..||.|++.-.-.| ...+||.+||.--.
T Consensus 28 P~CP~C~seytYeD--g~l~vCPeC~hEW~ 55 (138)
T 2akl_A 28 PPCPQCNSEYTYED--GALLVCPECAHEWS 55 (138)
T ss_dssp CCCTTTCCCCCEEC--SSSEEETTTTEEEC
T ss_pred CCCCCCCCcceEec--CCeEECCccccccC
Confidence 37999999854333 46899999998763
No 63
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=86.09 E-value=0.31 Score=36.30 Aligned_cols=31 Identities=16% Similarity=0.496 Sum_probs=21.6
Q ss_pred CCCCCCCCCCccccc------CCC---ceecCcCceeecc
Q 010689 2 VWCSSCARHVTGHRP------YDS---QLCCDRCGKVLED 32 (504)
Q Consensus 2 ~~Cp~Cgs~~iv~D~------~~G---~~VC~~CG~Vlee 32 (504)
+.||.||.....+.. +++ .++|.+||..-.+
T Consensus 16 ~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 16 ITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp CCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred eECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 579999997654321 223 6899999987544
No 64
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=86.07 E-value=0.41 Score=32.89 Aligned_cols=28 Identities=11% Similarity=0.082 Sum_probs=24.4
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
...|.++||+.+||+..||.+.++.+..
T Consensus 20 ~g~s~~~IA~~lgis~~Tv~~~~~~~~~ 47 (51)
T 1tc3_C 20 LNVSLHEMSRKISRSRHCIRVYLKDPVS 47 (51)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHCSTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHhhHHh
Confidence 3468999999999999999999987764
No 65
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=84.21 E-value=0.41 Score=39.83 Aligned_cols=13 Identities=15% Similarity=0.151 Sum_probs=11.6
Q ss_pred CCceecCcCceee
Q 010689 18 DSQLCCDRCGKVL 30 (504)
Q Consensus 18 ~G~~VC~~CG~Vl 30 (504)
.|.+||..||...
T Consensus 51 ~~~LvC~~c~~~Y 63 (97)
T 2k5r_A 51 HEALITRDRKQVF 63 (97)
T ss_dssp SEEEECTTSCEEE
T ss_pred CCeEEcCCCCCCc
Confidence 6899999999975
No 66
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=83.58 E-value=16 Score=36.10 Aligned_cols=105 Identities=6% Similarity=-0.002 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHhC--ccc-CCCchhHHHHHHHHHHHHh-cCCCCcHHHHHHHhCcChHH
Q 010689 74 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVAR--NFT-KGRRTEQVQASCLYLACRQ-KSKPFLLIDFSNYLNINVYE 149 (504)
Q Consensus 74 a~~~I~~i~~~L~Lp~~~~i~e~A~~iyk~a~~~--~~~-rGR~~~~vaAACLYiACR~-~~~p~tL~dIs~~~~vs~~~ 149 (504)
..++|.++...-+++ ..+.=.|..|+.++... ++. .......+..+||-+|.+. .....+-+..|.+.|+++.+
T Consensus 77 I~~Yl~RI~k~t~ls--~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl~E 154 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLE--HCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCHE 154 (293)
T ss_dssp HHHHHHHHHHTTTCC--HHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCHHH
Confidence 456788888888899 78887787777777652 332 3455677888889999986 67788899999999999999
Q ss_pred HHHHHHHHHHHhcccccccccccCCccchHHHHHHhh
Q 010689 150 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 186 (504)
Q Consensus 150 Lg~~~~~L~~~L~i~~~~~~~~~~dP~~~I~r~~~~L 186 (504)
|+..-+.++..|+.+.. ++++.|...+...+
T Consensus 155 LN~LE~eFL~lLdf~L~------V~~ee~~~cy~E~~ 185 (293)
T 2pmi_B 155 LNILENDFLKRVNYRII------PRDHNITLCSIEQK 185 (293)
T ss_dssp HHHHHHHHHHTTTTCCS------CCTTHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCcee------eCHHHHHHHHHHHh
Confidence 99999999999988764 66777776555544
No 67
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=82.77 E-value=0.64 Score=37.49 Aligned_cols=33 Identities=21% Similarity=0.578 Sum_probs=26.5
Q ss_pred CCCCCCCCCcccccCCCceecCcCceeeccCccc
Q 010689 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFS 36 (504)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vlee~~id 36 (504)
.||.||...+ .....|-..|..||.++......
T Consensus 37 ~CpfCGk~~v-kR~a~GIW~C~kCg~~~AGGAy~ 69 (83)
T 3j21_i 37 TCPVCGRKAV-KRISTGIWQCQKCGATFAGGAYL 69 (83)
T ss_dssp CCSSSCSSCE-EEEETTEEEETTTCCEEECCSSS
T ss_pred CCCCCCCcee-EecCcCeEEcCCCCCEEeCCccc
Confidence 6999999854 44578999999999998765543
No 68
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=82.58 E-value=0.86 Score=38.82 Aligned_cols=31 Identities=16% Similarity=0.395 Sum_probs=21.9
Q ss_pred CCCCCCCCCCCccccc---CCCceecCcCceeec
Q 010689 1 MVWCSSCARHVTGHRP---YDSQLCCDRCGKVLE 31 (504)
Q Consensus 1 m~~Cp~Cgs~~iv~D~---~~G~~VC~~CG~Vle 31 (504)
|..||.||+--..... ....++|..||.+..
T Consensus 4 m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~ 37 (113)
T 3h0g_I 4 FQYCIECNNMLYPREDKVDRVLRLACRNCDYSEI 37 (113)
T ss_dssp CCCCSSSCCCCEECCCTTTCCCCEECSSSCCEEC
T ss_pred ceeCcCCCCEeeEcccCCCCeeEEECCCCCCeEE
Confidence 6789999987433221 123799999999764
No 69
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=82.44 E-value=0.76 Score=37.75 Aligned_cols=31 Identities=26% Similarity=0.595 Sum_probs=25.1
Q ss_pred CCCCCCCCCcccccCCCceecCcCceeeccCc
Q 010689 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLEDHN 34 (504)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vlee~~ 34 (504)
.||.||...+ .....|-..|..||.++....
T Consensus 38 ~CpfCgk~~v-kR~a~GIW~C~~Cg~~~AGGA 68 (92)
T 3iz5_m 38 FCEFCGKFAV-KRKAVGIWGCKDCGKVKAGGA 68 (92)
T ss_dssp CCTTTCSSCB-EEEETTEEECSSSCCEEECCS
T ss_pred cCcccCCCee-EecCcceEEcCCCCCEEeCCc
Confidence 6999999854 445789999999999987543
No 70
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=81.57 E-value=0.94 Score=35.53 Aligned_cols=32 Identities=22% Similarity=0.503 Sum_probs=25.8
Q ss_pred CCCCCCCCCcccccCCCceecCcCceeeccCcc
Q 010689 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNF 35 (504)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vlee~~i 35 (504)
.||.||...+ .....|-..|..||.++.....
T Consensus 28 ~C~fCgk~~v-kR~a~GIW~C~~C~~~~AGGAy 59 (72)
T 3jyw_9 28 DCSFCGKKTV-KRGAAGIWTCSCCKKTVAGGAY 59 (72)
T ss_dssp CCSSCCSSCB-SBCSSSCBCCSSSCCCCCCSSS
T ss_pred cCCCCCCcee-EecCCCeEECCCCCCEEeCCcc
Confidence 6999998854 4457899999999999876544
No 71
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=81.28 E-value=1.8 Score=34.38 Aligned_cols=45 Identities=13% Similarity=0.123 Sum_probs=40.2
Q ss_pred HHHHHHHhcCCCCcHHHHHHHhCcChHHHHHHHHHHHHHhccccc
Q 010689 122 CLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADE 166 (504)
Q Consensus 122 CLYiACR~~~~p~tL~dIs~~~~vs~~~Lg~~~~~L~~~L~i~~~ 166 (504)
-|+-+.+..|.|....+|+..+|++.++|.+++..|.+.-.|..|
T Consensus 23 kVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI~SP 67 (80)
T 2lnb_A 23 RILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSLT 67 (80)
T ss_dssp HHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCccCC
Confidence 366788999999999999999999999999999999998877544
No 72
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=81.06 E-value=0.77 Score=34.22 Aligned_cols=26 Identities=31% Similarity=0.781 Sum_probs=20.7
Q ss_pred CCCCCCCCCCcccccCCCceecC--cCceee
Q 010689 2 VWCSSCARHVTGHRPYDSQLCCD--RCGKVL 30 (504)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VC~--~CG~Vl 30 (504)
..||.|++. +.++ .|.++|. .||...
T Consensus 11 L~CP~c~~~-L~~~--~~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 11 LACPACHAP-LEER--DAELICTGQDCGLAY 38 (56)
T ss_dssp CCCSSSCSC-EEEE--TTEEEECSSSCCCEE
T ss_pred eeCCCCCCc-ceec--CCEEEcCCcCCCcEE
Confidence 479999986 4444 3999999 999875
No 73
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=80.75 E-value=0.66 Score=44.75 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=20.1
Q ss_pred CCCCCCCC-CcccccCCCceecCcCcee
Q 010689 3 WCSSCARH-VTGHRPYDSQLCCDRCGKV 29 (504)
Q Consensus 3 ~Cp~Cgs~-~iv~D~~~G~~VC~~CG~V 29 (504)
.||.||++ ...++ .+|...|-+||.-
T Consensus 16 ~CP~Cg~~d~~~~~-~dg~~~C~~Cg~~ 42 (255)
T 1nui_A 16 PCDNCGSSDGNSLF-SDGHTFCYVCEKW 42 (255)
T ss_dssp CCSSSCCSSCEEEE-TTSCEEETTTCCE
T ss_pred cCCCCCCCCCceEe-CCCCeecccCCCc
Confidence 69999995 44434 3588999999975
No 74
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=80.70 E-value=0.45 Score=37.20 Aligned_cols=27 Identities=22% Similarity=0.685 Sum_probs=18.1
Q ss_pred CCCCCCCCCcccccCCCceecCcCce-eec
Q 010689 3 WCSSCARHVTGHRPYDSQLCCDRCGK-VLE 31 (504)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VC~~CG~-Vle 31 (504)
.|+.||...-+. ....+.|..||. ||-
T Consensus 30 ~C~~CG~~~e~~--~~d~irCp~CG~RILy 57 (70)
T 1twf_L 30 ICAECSSKLSLS--RTDAVRCKDCGHRILL 57 (70)
T ss_dssp ECSSSCCEECCC--TTSTTCCSSSCCCCCB
T ss_pred ECCCCCCcceeC--CCCCccCCCCCceEeE
Confidence 599999863322 234567999998 653
No 75
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=80.62 E-value=0.61 Score=36.74 Aligned_cols=32 Identities=22% Similarity=0.503 Sum_probs=25.3
Q ss_pred CCCCCCCCCcccccCCCceecCcCceeeccCcc
Q 010689 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNF 35 (504)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vlee~~i 35 (504)
.||.||...+ .....|...|..||.++.-...
T Consensus 29 ~C~fCgk~~v-kR~a~GIW~C~~C~~~~AGGAy 60 (73)
T 1ffk_W 29 KCPVCGFPKL-KRASTSIWVCGHCGYKIAGGAY 60 (73)
T ss_pred cCCCCCCcee-EEEEeEEEECCCCCcEEECCCc
Confidence 6999998754 4446799999999999876544
No 76
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=79.95 E-value=0.48 Score=35.88 Aligned_cols=35 Identities=20% Similarity=0.466 Sum_probs=24.0
Q ss_pred CCCCCCCCCCCcccccCCCceecCcCceeeccCcccccccccccC
Q 010689 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNA 45 (504)
Q Consensus 1 m~~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vlee~~id~~~~f~~~~ 45 (504)
|..|+.||...+ .-+|..||.... ..+-+-|+-++
T Consensus 6 mr~C~~CgvYTL-------k~~CP~CG~~T~---~~hParfSp~D 40 (60)
T 2apo_B 6 MKKCPKCGLYTL-------KEICPKCGEKTV---IPKPPKFSLED 40 (60)
T ss_dssp CEECTTTCCEES-------SSBCSSSCSBCB---CCCCCCCCTTC
T ss_pred ceeCCCCCCEec-------cccCcCCCCcCC---CCCCCCCCCCc
Confidence 458999997643 567999998754 23445676543
No 77
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=79.61 E-value=8.1 Score=38.47 Aligned_cols=86 Identities=17% Similarity=0.218 Sum_probs=59.6
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHhcc-cccc--cCCChhHHHHHHHHHHHH-hcCCCCCHhhHHhhhccCHHHHHHHH
Q 010689 180 HKFTDRLLPGGNKKVCDTARDILASMKR-DWIT--TGRKPSGLCGAALYVSAL-THGLKFSKSDIVKIVHICEATLMKRL 255 (504)
Q Consensus 180 ~r~~~~L~~~l~~~V~~~A~~I~~~~~~-~~l~--~GR~P~~IAAAalylAa~-~~g~~~t~keIa~v~~Vse~TIrkr~ 255 (504)
..+|..|. ++..+...|+++.+.+.. +.+. +--...-..+||||+|+. +.|..+|+.+|-+.++++...-=+++
T Consensus 7 ~~lC~~Ln--ld~~~~~~Aw~~~~~~~~~~~~~~~~~~~~~~~w~acLY~a~~~~~~n~vsLt~LLr~~~lsi~~Ff~k~ 84 (304)
T 2qdj_A 7 TALCQKLK--IPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTELQKNIEISVHKFFNLL 84 (304)
T ss_dssp HHHHHHTT--CCHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHHHhccccccCCCccchHHHHHHhHHHHhhccCCCcCcHHHHHHHcCCCHHHHHHHH
Confidence 45788887 889999999999999887 3321 122355566667999996 45777899999999988877665555
Q ss_pred HHhhccCCCCCChHHHHHH
Q 010689 256 IEFENTDSGSLTIEDFMAR 274 (504)
Q Consensus 256 kE~~~t~~~~lt~~~~~~~ 274 (504)
+.. . ...+|...
T Consensus 85 ~~~---d----~~~~~~~~ 96 (304)
T 2qdj_A 85 KEI---D----TSTKVDNA 96 (304)
T ss_dssp TTS---C----CCHHHHHH
T ss_pred HHc---C----CCHHHHHH
Confidence 551 1 45666554
No 78
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=79.52 E-value=1 Score=37.02 Aligned_cols=32 Identities=22% Similarity=0.503 Sum_probs=25.3
Q ss_pred CCCCCCCCCcccccCCCceecCcCceeeccCcc
Q 010689 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNF 35 (504)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vlee~~i 35 (504)
.||.||...+ .....|-..|..||.++.....
T Consensus 38 ~CpfCgk~~v-kR~a~GIW~C~~C~~~~AGGAy 69 (92)
T 3izc_m 38 DCSFCGKKTV-KRGAAGIWTCSCCKKTVAGGAY 69 (92)
T ss_dssp CCSSSCSSCC-EEEETTEEECTTTCCEEECCSS
T ss_pred cCCCCCCcee-eecccceEEcCCCCCEEeCCcc
Confidence 6999998854 4457899999999999875433
No 79
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=79.23 E-value=0.6 Score=40.35 Aligned_cols=31 Identities=19% Similarity=0.451 Sum_probs=22.3
Q ss_pred CCCCCCCCCCCc-ccc--cCCCceecCcCceeec
Q 010689 1 MVWCSSCARHVT-GHR--PYDSQLCCDRCGKVLE 31 (504)
Q Consensus 1 m~~Cp~Cgs~~i-v~D--~~~G~~VC~~CG~Vle 31 (504)
|..||.||.--. ..| ...+.++|..||....
T Consensus 4 ~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~ 37 (122)
T 1twf_I 4 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVEE 37 (122)
T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEE
T ss_pred CCcccccCccCcccccCcCCCCEEECCcCCCeee
Confidence 468999998632 233 3346899999999765
No 80
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=78.55 E-value=0.89 Score=38.01 Aligned_cols=31 Identities=19% Similarity=0.422 Sum_probs=24.8
Q ss_pred CCCCCCCCCcccccCCCceecCcCceeeccCc
Q 010689 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLEDHN 34 (504)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vlee~~ 34 (504)
.||.||... +.....|-..|..||.++....
T Consensus 38 ~CpfCgk~~-vKR~a~GIW~C~kCg~~~AGGA 68 (103)
T 4a17_Y 38 GCPFCGKVA-VKRAAVGIWKCKPCKKIIAGGA 68 (103)
T ss_dssp ECTTTCCEE-EEEEETTEEEETTTTEEEECCS
T ss_pred CCCCCCCce-eeecCcceEEcCCCCCEEeCCc
Confidence 599999875 3445789999999999987543
No 81
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=78.37 E-value=0.78 Score=32.98 Aligned_cols=24 Identities=13% Similarity=0.290 Sum_probs=21.2
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHH
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLI 256 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~k 256 (504)
...|+++||+.+|||..||++.++
T Consensus 30 ~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 30 MGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 346999999999999999999874
No 82
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=77.94 E-value=0.91 Score=38.79 Aligned_cols=32 Identities=16% Similarity=0.393 Sum_probs=25.1
Q ss_pred CCCCCCCCCcccccCCCceecCcCceeeccCcc
Q 010689 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNF 35 (504)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vlee~~i 35 (504)
.||.||... +.....|-..|..||.++.-...
T Consensus 62 tCPfCGk~~-vKR~avGIW~C~~Cgk~fAGGAy 93 (116)
T 3cc2_Z 62 ACPNCGEDR-VDRQGTGIWQCSYCDYKFTGGSY 93 (116)
T ss_dssp ECSSSCCEE-EEEEETTEEEETTTCCEEECCSS
T ss_pred cCCCCCCce-eEecCceeEECCCCCCEEECCCc
Confidence 699999864 44456799999999999875543
No 83
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=77.83 E-value=1.2 Score=39.09 Aligned_cols=30 Identities=17% Similarity=0.425 Sum_probs=21.0
Q ss_pred CCCCCCCCCCCccc-cc--CCCceecCcCceee
Q 010689 1 MVWCSSCARHVTGH-RP--YDSQLCCDRCGKVL 30 (504)
Q Consensus 1 m~~Cp~Cgs~~iv~-D~--~~G~~VC~~CG~Vl 30 (504)
|..||.||+--+.. |. ....++|+.||.+.
T Consensus 24 ~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 24 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp CCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred CeeCCCCCCEeeECccCCCceeEEECCCCCCcE
Confidence 56899999864332 22 12369999999975
No 84
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=76.77 E-value=0.75 Score=31.13 Aligned_cols=29 Identities=28% Similarity=0.527 Sum_probs=20.6
Q ss_pred CCCCCCCCCCcc--cccCCCceecCcCceee
Q 010689 2 VWCSSCARHVTG--HRPYDSQLCCDRCGKVL 30 (504)
Q Consensus 2 ~~Cp~Cgs~~iv--~D~~~G~~VC~~CG~Vl 30 (504)
|.||.||+.... .+...-.+.|..||..-
T Consensus 1 VlC~~C~~peT~l~~~~~~~~l~C~aCG~~~ 31 (36)
T 1k81_A 1 VICRECGKPDTKIIKEGRVHLLKCMACGAIR 31 (36)
T ss_dssp CCCSSSCSCEEEEEEETTEEEEEEETTTEEE
T ss_pred CCCcCCCCCCcEEEEeCCcEEEEhhcCCCcc
Confidence 579999998543 33333467799999863
No 85
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=75.65 E-value=2.6 Score=37.55 Aligned_cols=33 Identities=15% Similarity=0.288 Sum_probs=29.1
Q ss_pred hcCCCCCHhhHHhhhccCHHHHHHHHHHhhccC
Q 010689 230 THGLKFSKSDIVKIVHICEATLMKRLIEFENTD 262 (504)
Q Consensus 230 ~~g~~~t~keIa~v~~Vse~TIrkr~kE~~~t~ 262 (504)
..+-+.|.++||+.+|+|+.|+++|++.+.+..
T Consensus 13 ~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g 45 (162)
T 3i4p_A 13 QEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDG 45 (162)
T ss_dssp TTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 346788999999999999999999999998654
No 86
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=73.73 E-value=23 Score=35.89 Aligned_cols=126 Identities=14% Similarity=0.136 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHHHhc----------CCCCcHHHHHHHhCcChHHHHHHHHHHHHHhcccccc------------------
Q 010689 116 EQVQASCLYLACRQK----------SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADES------------------ 167 (504)
Q Consensus 116 ~~vaAACLYiACR~~----------~~p~tL~dIs~~~~vs~~~Lg~~~~~L~~~L~i~~~~------------------ 167 (504)
..+.|.|+=++...+ +...++--|-+.++++.+++.++...+.+.-. ..|.
T Consensus 105 ~sLlACc~EiVl~ay~~~~~~~~~~~~~~~FP~il~~~~i~afdf~KVIE~fVr~e~-~LprelvkHL~~iEe~iLesla 183 (347)
T 2r7g_A 105 MSLLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDFYKVIESFIKAEG-NLTREMIKHLERCEHRIMESLA 183 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CCCCCTTHHHHHHTCCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHhcccccccccccccCCCcHHHHhcCCChHHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHHHHHH
Confidence 567888877765543 23577778999999999999999777666511 0000
Q ss_pred ------cc--cccCCc--------cch-----------HHHHHHhhCCCCCHHHHHHHHHHHHHhc--ccccccCCChhH
Q 010689 168 ------NV--LKQVDP--------SIF-----------LHKFTDRLLPGGNKKVCDTARDILASMK--RDWITTGRKPSG 218 (504)
Q Consensus 168 ------~~--~~~~dP--------~~~-----------I~r~~~~L~~~l~~~V~~~A~~I~~~~~--~~~l~~GR~P~~ 218 (504)
.+ .....+ ..| |..+|+.|.. ..+++...++.+.+.+. +..+..+|+---
T Consensus 184 W~~~S~L~~~l~~~~~~~g~~~sl~~f~rKvy~La~~Rl~~LC~~L~~-~~~~~~~~iWt~fe~~l~~~t~L~~dRHLDQ 262 (347)
T 2r7g_A 184 WLSDSPLFDLIKQSKDREGKSTSLSLFYKKVYRLAYLRLNTLCERLLS-EHPELEHIIWTLFQHTLQNEYELMRDRHLDQ 262 (347)
T ss_dssp GSTTCTHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHCT-TCTTHHHHHHHHHHHHHHHCGGGGTTSCHHH
T ss_pred hccCCHHHHHHHhccccCCcccHHHHHHHHHHHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHHhChHhhcCCcHHH
Confidence 00 000001 112 3445777741 23355666666666654 367899999999
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHhh
Q 010689 219 LCGAALYVSALTHGLKFSKSDIVKI 243 (504)
Q Consensus 219 IAAAalylAa~~~g~~~t~keIa~v 243 (504)
|.-.|||+.|+.++..+|.++|...
T Consensus 263 iilCaiY~i~Kv~~~~~tF~~Ii~~ 287 (347)
T 2r7g_A 263 IMMCSMYGICKVKNIDLKFKIIVTA 287 (347)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 9999999999999988998888763
No 87
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=72.73 E-value=4.9 Score=36.05 Aligned_cols=48 Identities=19% Similarity=0.063 Sum_probs=40.3
Q ss_pred CchhHHHHHHHHHHHHhcCCCCcHHHHHHHhCcChHHHHHHHHHHHHH
Q 010689 113 RRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (504)
Q Consensus 113 R~~~~vaAACLYiACR~~~~p~tL~dIs~~~~vs~~~Lg~~~~~L~~~ 160 (504)
++...-+-+.+|+|.+..+.|.+..+||+.++++...|.+.+.+|.+.
T Consensus 24 ~~~~yAlr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~a 71 (159)
T 3lwf_A 24 TKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNA 71 (159)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 344556678889998766779999999999999999999999988775
No 88
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=71.70 E-value=3.2 Score=33.10 Aligned_cols=29 Identities=10% Similarity=0.130 Sum_probs=26.4
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
|.+.|..+||+.+||+..||++++..+..
T Consensus 25 g~~~t~~eLA~~Lgvsr~tV~~~L~~Le~ 53 (81)
T 1qbj_A 25 GKATTAHDLSGKLGTPKKEINRVLYSLAK 53 (81)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45799999999999999999999998874
No 89
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=71.12 E-value=10 Score=35.54 Aligned_cols=78 Identities=9% Similarity=0.125 Sum_probs=51.2
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHhcccccccC---CChhHHHHHHHHHHHHhcCCCCCHhhHHhhhccCHHHHHHHH
Q 010689 179 LHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG---RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 255 (504)
Q Consensus 179 I~r~~~~L~~~l~~~V~~~A~~I~~~~~~~~l~~G---R~P~~IAAAalylAa~~~g~~~t~keIa~v~~Vse~TIrkr~ 255 (504)
|.++-.+-. ++..|...|..|++.+.--.---| -+|.-+||||+.+|+.-.+.++++.|+-- ..-+-..|.-|.
T Consensus 19 lr~L~kKs~--~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~PiplaE~r~-lD~sL~Dvelrr 95 (260)
T 3h4c_A 19 MRGLHKKAV--LPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQPLPLAEVRC-LDSSLGDVELRR 95 (260)
T ss_dssp HHHHHHHTT--CCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHH-HCTTCCCHHHHH
T ss_pred HHHHHhhcc--CcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCCCccHHHHHH-HhhhhhHHHHHH
Confidence 344444333 788999999999987642111112 57999999999999999999999877532 222222444444
Q ss_pred HHhh
Q 010689 256 IEFE 259 (504)
Q Consensus 256 kE~~ 259 (504)
-|+.
T Consensus 96 ~Eiv 99 (260)
T 3h4c_A 96 ADIV 99 (260)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4544
No 90
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=71.08 E-value=2.7 Score=33.04 Aligned_cols=29 Identities=10% Similarity=0.130 Sum_probs=26.0
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
|-+.|..+||+.+||+..||++++..+..
T Consensus 29 ~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~ 57 (77)
T 1qgp_A 29 GKATTAHDLSGKLGTPKKEINRVLYSLAK 57 (77)
T ss_dssp SSCEEHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34799999999999999999999998864
No 91
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=70.92 E-value=1.3 Score=29.75 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=8.7
Q ss_pred CCCCCCCCCcccccCCCceec
Q 010689 3 WCSSCARHVTGHRPYDSQLCC 23 (504)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VC 23 (504)
.|+.||.-..+.....|.++|
T Consensus 8 ~C~~CGnivev~~~g~~~l~C 28 (36)
T 1dxg_A 8 KCELCGQVVKVLEEGGGTLVC 28 (36)
T ss_dssp ECTTTCCEEEEEECCSSCEEE
T ss_pred EcCCCCcEEEEEeCCCcCEEe
Confidence 355554332222233445555
No 92
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=70.82 E-value=3.9 Score=36.91 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=27.9
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhccC
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFENTD 262 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~t~ 262 (504)
+-+.|.++||+.+|+|+.|+++|++.+.+..
T Consensus 39 ~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G 69 (171)
T 2e1c_A 39 DGKAPLREISKITGLAESTIHERIRKLRESG 69 (171)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4589999999999999999999999998653
No 93
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=70.47 E-value=4.2 Score=35.53 Aligned_cols=30 Identities=23% Similarity=0.340 Sum_probs=27.4
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
+-+.|.++||+.+|+|++|+++|++.+.+.
T Consensus 19 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 48 (151)
T 2cyy_A 19 DGKAPLREISKITGLAESTIHERIRKLRES 48 (151)
T ss_dssp CTTCCHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 458999999999999999999999999764
No 94
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=70.23 E-value=4.3 Score=35.46 Aligned_cols=30 Identities=10% Similarity=0.196 Sum_probs=27.1
Q ss_pred cCCCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 231 HGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 231 ~g~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
.+-+.|..+||+.+|+|++|+++|++.+.+
T Consensus 19 ~~~~~s~~ela~~lg~s~~tv~~~l~~L~~ 48 (152)
T 2cg4_A 19 GNARTAYAELAKQFGVSPETIHVRVEKMKQ 48 (152)
T ss_dssp HCTTSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 356899999999999999999999999875
No 95
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=70.19 E-value=22 Score=34.04 Aligned_cols=85 Identities=14% Similarity=0.079 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHcCCCCchH----HHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCCCCc----HHHHHHHhCc
Q 010689 74 AFDDMRQMKNALNIGESDE----IVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFL----LIDFSNYLNI 145 (504)
Q Consensus 74 a~~~I~~i~~~L~Lp~~~~----i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~~~~p~t----L~dIs~~~~v 145 (504)
....+..+...++.+ .. +...|..+...+.-..-+-.-++..+||||+..+. .+.+.. ...++..+|+
T Consensus 149 p~~FL~~~l~~~~~~--~~~~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~l--~~~~~~~~~~~~~L~~~t~~ 224 (252)
T 1f5q_B 149 STDLICYILHIMHAP--REDYLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLTM--NQKYDYYENRIDGVCKSLYI 224 (252)
T ss_dssp HHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCC--cchHHHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHHh--ccCCCchhhHHHHHHHHHCc
Confidence 466788888888887 43 34456555555543222235677889999865443 444433 3456778999
Q ss_pred ChHHHHHHHHHHHHHhc
Q 010689 146 NVYELGAVYLQLCQVLY 162 (504)
Q Consensus 146 s~~~Lg~~~~~L~~~L~ 162 (504)
+...|..++..|.+.+.
T Consensus 225 ~~~~l~~C~~~i~~~l~ 241 (252)
T 1f5q_B 225 TKEELHQCCDLVDIAIV 241 (252)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999998884
No 96
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=69.73 E-value=1.4 Score=32.17 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=18.6
Q ss_pred CCCCCCCCCcccccCCCceecCcCcee
Q 010689 3 WCSSCARHVTGHRPYDSQLCCDRCGKV 29 (504)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VC~~CG~V 29 (504)
.||.||+. ...|-..|..||..
T Consensus 16 iCpkC~a~-----~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 16 VCLRCGAT-----NPWGAKKCRKCGYK 37 (51)
T ss_dssp ECTTTCCE-----ECTTCSSCSSSSSC
T ss_pred cCCCCCCc-----CCCCceecCCCCCc
Confidence 69999986 35699999999987
No 97
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=69.71 E-value=1.3 Score=34.57 Aligned_cols=27 Identities=26% Similarity=0.657 Sum_probs=20.9
Q ss_pred CCCCCCCCCCcccccCCCceecCcCceeec
Q 010689 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLE 31 (504)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vle 31 (504)
+.|| ||.-.+ .+...-..-|. ||.++.
T Consensus 5 v~C~-C~~~~~-~~~~~kT~~C~-CG~~~~ 31 (71)
T 1gh9_A 5 FRCD-CGRALY-SREGAKTRKCV-CGRTVN 31 (71)
T ss_dssp EEET-TSCCEE-EETTCSEEEET-TTEEEE
T ss_pred EECC-CCCEEE-EcCCCcEEECC-CCCeee
Confidence 5799 998744 44456788999 999986
No 98
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=69.70 E-value=1.8 Score=31.39 Aligned_cols=28 Identities=18% Similarity=0.548 Sum_probs=19.2
Q ss_pred CCCCCCCCCCcccc------cC---CCceecCcCcee
Q 010689 2 VWCSSCARHVTGHR------PY---DSQLCCDRCGKV 29 (504)
Q Consensus 2 ~~Cp~Cgs~~iv~D------~~---~G~~VC~~CG~V 29 (504)
..||.||+...++- .+ +=.++|.+||..
T Consensus 10 ~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~ 46 (50)
T 1tfi_A 10 FTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNR 46 (50)
T ss_dssp SCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCE
T ss_pred cCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCe
Confidence 57999999865421 11 236899999963
No 99
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=69.46 E-value=3.2 Score=31.54 Aligned_cols=23 Identities=9% Similarity=0.151 Sum_probs=20.8
Q ss_pred CCHhhHHhhhccCHHHHHHHHHH
Q 010689 235 FSKSDIVKIVHICEATLMKRLIE 257 (504)
Q Consensus 235 ~t~keIa~v~~Vse~TIrkr~kE 257 (504)
+|++|||+.+|||.+||.+-+..
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng 23 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVING 23 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 47899999999999999998874
No 100
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=69.39 E-value=4.6 Score=35.17 Aligned_cols=31 Identities=6% Similarity=0.292 Sum_probs=27.6
Q ss_pred cCCCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 231 HGLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 231 ~g~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
.+-+.|.++||+.+|+|+.|+++|++.+.+.
T Consensus 20 ~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 50 (151)
T 2dbb_A 20 ENSRLTYRELADILNTTRQRIARRIDKLKKL 50 (151)
T ss_dssp HCTTCCHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3568999999999999999999999998753
No 101
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=69.33 E-value=4.7 Score=35.02 Aligned_cols=31 Identities=29% Similarity=0.398 Sum_probs=27.8
Q ss_pred cCCCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 231 HGLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 231 ~g~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
.+-+.+.++||+.+|+|.+|+++|++.+.+.
T Consensus 14 ~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~ 44 (150)
T 2pn6_A 14 YNAKYSLDEIAREIRIPKATLSYRIKKLEKD 44 (150)
T ss_dssp TCTTSCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3557999999999999999999999999864
No 102
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=69.29 E-value=4.6 Score=35.02 Aligned_cols=30 Identities=10% Similarity=0.296 Sum_probs=27.3
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
+-+.|.++||+.+|+|.+|+++|++.+.+.
T Consensus 17 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 46 (144)
T 2cfx_A 17 DSRLSMRELGRKIKLSPPSVTERVRQLESF 46 (144)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 567999999999999999999999999764
No 103
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=68.85 E-value=1.3 Score=33.44 Aligned_cols=35 Identities=20% Similarity=0.508 Sum_probs=23.1
Q ss_pred CCCCCCCCCCCcccccCCCceecCcCceeeccCcccccccccccC
Q 010689 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHNFSTEATFVKNA 45 (504)
Q Consensus 1 m~~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vlee~~id~~~~f~~~~ 45 (504)
|..|+.||...+ .-+|..||.... ..+-+-|+-++
T Consensus 5 mr~C~~Cg~YTL-------k~~CP~CG~~t~---~ahParfSP~D 39 (60)
T 2aus_D 5 IRKCPKCGRYTL-------KETCPVCGEKTK---VAHPPRFSPED 39 (60)
T ss_dssp CEECTTTCCEES-------SSBCTTTCSBCE---ESSCCCCCSCC
T ss_pred ceECCCCCCEEc-------cccCcCCCCccC---CCCCCCCCCCC
Confidence 568999997533 457999998643 22444666543
No 104
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=68.81 E-value=4.7 Score=35.66 Aligned_cols=30 Identities=13% Similarity=0.359 Sum_probs=27.3
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
+-+.|.++||+.+|+|.+|+++|++.+.+.
T Consensus 22 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 51 (162)
T 2p5v_A 22 NGRLTNVELSERVALSPSPCLRRLKQLEDA 51 (162)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 567899999999999999999999999764
No 105
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=68.31 E-value=5 Score=34.29 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=27.4
Q ss_pred cCCCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 231 HGLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 231 ~g~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
.+-+.+..+||+.+|+|..|++++++.+.+.
T Consensus 15 ~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~ 45 (141)
T 1i1g_A 15 KDARTPFTEIAKKLGISETAVRKRVKALEEK 45 (141)
T ss_dssp HCTTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3557899999999999999999999998753
No 106
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=68.18 E-value=0.92 Score=31.50 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=22.2
Q ss_pred CCHhhHHhhhccCHHHHHHHHHHhh
Q 010689 235 FSKSDIVKIVHICEATLMKRLIEFE 259 (504)
Q Consensus 235 ~t~keIa~v~~Vse~TIrkr~kE~~ 259 (504)
.|+.+||..+||+..||.+.++.+.
T Consensus 22 ~s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 22 HPRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp CCHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHcc
Confidence 7999999999999999999876543
No 107
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=68.05 E-value=3.7 Score=29.77 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=24.1
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
...|.++||...|+|+.||+.++..+..
T Consensus 12 ~g~s~~eIA~~l~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 12 EGYTNHGISEKLHISIKTVETHRMNMMR 39 (61)
T ss_dssp TSCCSHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3468899999999999999998887654
No 108
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=67.92 E-value=5.9 Score=30.75 Aligned_cols=28 Identities=11% Similarity=0.084 Sum_probs=25.6
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
-+.|..|||+.+|++.+|+++.++.+.+
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L~~ 40 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLLEK 40 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4689999999999999999999999875
No 109
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=67.29 E-value=5.1 Score=36.06 Aligned_cols=30 Identities=13% Similarity=0.253 Sum_probs=27.2
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
+-++|.++||+.+|+|++|+++|++.+.+.
T Consensus 29 ~~~~s~~eLA~~lglS~~tv~~~l~~L~~~ 58 (171)
T 2ia0_A 29 DARLTISELSEQLKKPESTIHFRIKKLQER 58 (171)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 557999999999999999999999998753
No 110
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=66.96 E-value=2 Score=34.72 Aligned_cols=30 Identities=13% Similarity=0.356 Sum_probs=22.5
Q ss_pred CCCCCCCC-Cc--ccccC--CCceecCcCceeecc
Q 010689 3 WCSSCARH-VT--GHRPY--DSQLCCDRCGKVLED 32 (504)
Q Consensus 3 ~Cp~Cgs~-~i--v~D~~--~G~~VC~~CG~Vlee 32 (504)
.||.||+. .+ ..|.. .|.+.|..||.-.+-
T Consensus 25 ~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~ 59 (85)
T 1wii_A 25 TCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQT 59 (85)
T ss_dssp CCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEE
T ss_pred cCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEe
Confidence 59999998 33 34433 589999999987654
No 111
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=66.57 E-value=1.5 Score=31.41 Aligned_cols=23 Identities=30% Similarity=0.876 Sum_probs=13.3
Q ss_pred CCCCCCCCCcccccCCC----------ceecCcCce
Q 010689 3 WCSSCARHVTGHRPYDS----------QLCCDRCGK 28 (504)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G----------~~VC~~CG~ 28 (504)
.|+.||- ++|+..| +.+|..||.
T Consensus 6 ~C~vCGy---vyd~~~Gd~t~f~~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 6 VCNVCGY---EYDPAEHDNVPFDQLPDDWCCPVCGV 38 (46)
T ss_dssp EETTTCC---EECGGGGTTCCGGGSCTTCBCTTTCC
T ss_pred ECCCCCe---EEeCCcCCCcchhhCCCCCcCcCCCC
Confidence 4777773 4554444 237777775
No 112
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=66.13 E-value=8.8 Score=27.95 Aligned_cols=28 Identities=14% Similarity=0.336 Sum_probs=24.8
Q ss_pred CCCCCHhhHHhhh-----ccCHHHHHHHHHHhh
Q 010689 232 GLKFSKSDIVKIV-----HICEATLMKRLIEFE 259 (504)
Q Consensus 232 g~~~t~keIa~v~-----~Vse~TIrkr~kE~~ 259 (504)
+-..|..+|+..+ +||..||++-++++.
T Consensus 17 ~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~lg 49 (64)
T 2p5k_A 17 NEIETQDELVDMLKQDGYKVTQATVSRDIKELH 49 (64)
T ss_dssp SCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcC
Confidence 4579999999999 999999999998654
No 113
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=66.03 E-value=4.5 Score=31.96 Aligned_cols=29 Identities=10% Similarity=0.164 Sum_probs=25.4
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
.-.++++|+|+.++||+.|||+=+.++.+
T Consensus 14 ~g~vsv~eLa~~l~VS~~TIRrdL~~Le~ 42 (78)
T 1xn7_A 14 RGRMEAAQISQTLNTPQPMINAMLQQLES 42 (78)
T ss_dssp SCSBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45799999999999999999998887754
No 114
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=65.79 E-value=6.3 Score=29.82 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=27.2
Q ss_pred cCCCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 231 HGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 231 ~g~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
.+-+++..+||+.+|++..||.+.++.+.+
T Consensus 22 ~~~~~s~~eLA~~lglsr~tv~~~l~~L~~ 51 (67)
T 2heo_A 22 DGGPVAIFQLVKKCQVPKKTLNQVLYRLKK 51 (67)
T ss_dssp HCSCEEHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 456799999999999999999999999875
No 115
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=65.73 E-value=6.2 Score=34.52 Aligned_cols=45 Identities=13% Similarity=-0.017 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHhcCCCCcHHHHHHHhCcChHHHHHHHHHHHHH
Q 010689 116 EQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (504)
Q Consensus 116 ~~vaAACLYiACR~~~~p~tL~dIs~~~~vs~~~Lg~~~~~L~~~ 160 (504)
..-+-+.+|+|-...+.|.+..+||+.++++...|.+.+.+|.+.
T Consensus 11 ~yAl~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~a 55 (143)
T 3t8r_A 11 RYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNA 55 (143)
T ss_dssp HHHHHHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 344557788887655679999999999999999999999998775
No 116
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=65.72 E-value=13 Score=30.86 Aligned_cols=51 Identities=10% Similarity=0.078 Sum_probs=39.4
Q ss_pred CCCchhHHHH--HHHHHHHHhcCCCCcHHHHHHHhCcChHHHHHHHHHHHHHhcc
Q 010689 111 KGRRTEQVQA--SCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 163 (504)
Q Consensus 111 rGR~~~~vaA--ACLYiACR~~~~p~tL~dIs~~~~vs~~~Lg~~~~~L~~~L~i 163 (504)
++|+...+.| .+.|++-+. +..+|.+|+..+|-+..++..+++++.+.+.-
T Consensus 28 ~~R~~~i~~aRqiAmYL~r~~--t~~Sl~~IG~~fgRDHsTV~ha~~ki~~~~~~ 80 (101)
T 3pvv_A 28 PGKTRALAQSRQIAMYLCREL--TDLSLPKIGQAFGRDHTTVMYAQRKILSEMAE 80 (101)
T ss_dssp SCCCHHHHHHHHHHHHHHHHH--CCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCchhhHHHHHHHHHHHHH--hCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 4555544444 567775443 67899999999999999999999999998853
No 117
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=65.66 E-value=23 Score=31.88 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHhC--cChHHHHHHHHHHHHHhc
Q 010689 117 QVQASCLYLACRQKSKPFLLIDFSNYLN--INVYELGAVYLQLCQVLY 162 (504)
Q Consensus 117 ~vaAACLYiACR~~~~p~tL~dIs~~~~--vs~~~Lg~~~~~L~~~L~ 162 (504)
.++=|.||++ +.|.++.+++.+++ ++...+......|...+.
T Consensus 10 ~~iEAlLf~~----~~pvs~~~La~~~~~~~~~~~v~~~l~~L~~~y~ 53 (162)
T 1t6s_A 10 RSLEALIFSS----EEPVNLQTLSQITAHKFTPSELQEAVDELNRDYE 53 (162)
T ss_dssp HHHHHHHHHC----SSCBCHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc----CCCCCHHHHHHHhCcCCCHHHHHHHHHHHHHHhh
Confidence 4566788876 78999999999999 999999999888887764
No 118
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=65.51 E-value=6.1 Score=34.37 Aligned_cols=30 Identities=10% Similarity=0.159 Sum_probs=27.3
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
+-+.|..+||+.+|+|.+|++++++.+.+.
T Consensus 19 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 48 (150)
T 2w25_A 19 DGRATLSELATRAGLSVSAVQSRVRRLESR 48 (150)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 457999999999999999999999999864
No 119
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=64.44 E-value=10 Score=32.12 Aligned_cols=44 Identities=16% Similarity=0.042 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHhCcChHHHHHHHHHHHHH
Q 010689 117 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (504)
Q Consensus 117 ~vaAACLYiACR~~~~p~tL~dIs~~~~vs~~~Lg~~~~~L~~~ 160 (504)
..+.+..|++-+..+.|.+..+||+.++++...+.+.+..|.+.
T Consensus 10 ~al~iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~ 53 (129)
T 2y75_A 10 YGLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNA 53 (129)
T ss_dssp HHHHHHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34445566665555789999999999999999999998888774
No 120
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=64.31 E-value=2 Score=32.43 Aligned_cols=22 Identities=27% Similarity=0.662 Sum_probs=15.6
Q ss_pred CCCCCCCCCCcccccCCCceecCcCcee
Q 010689 2 VWCSSCARHVTGHRPYDSQLCCDRCGKV 29 (504)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VC~~CG~V 29 (504)
+.||.||... .-.-||.+||+-
T Consensus 31 ~~c~~cGe~~------~~H~vc~~CG~Y 52 (60)
T 3v2d_5 31 VPCPECKAMK------PPHTVCPECGYY 52 (60)
T ss_dssp EECTTTCCEE------CTTSCCTTTCEE
T ss_pred eECCCCCCee------cceEEcCCCCcC
Confidence 4699998742 244679999964
No 121
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=64.27 E-value=7 Score=29.20 Aligned_cols=28 Identities=14% Similarity=0.154 Sum_probs=24.1
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
...|.++||...|+|..||+.+++.+..
T Consensus 25 ~g~s~~eIA~~l~is~~tV~~~~~~~~~ 52 (74)
T 1fse_A 25 QDKTTKEIASELFISEKTVRNHISNAMQ 52 (74)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3459999999999999999999887653
No 122
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=64.18 E-value=17 Score=33.67 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=26.7
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
.++|+++||..+|++..|+.+-+++|.+-
T Consensus 176 ~~~t~~~iA~~lG~sr~tvsR~l~~L~~~ 204 (250)
T 3e6c_C 176 MPLSQKSIGEITGVHHVTVSRVLASLKRE 204 (250)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 57899999999999999999999999854
No 123
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=64.08 E-value=6.8 Score=30.65 Aligned_cols=28 Identities=14% Similarity=0.167 Sum_probs=24.5
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
...|.++||...|++..||++++.....
T Consensus 35 ~g~s~~eIA~~l~is~~tV~~~l~r~~~ 62 (82)
T 1je8_A 35 QGLPNKMIARRLDITESTVKVHVKHMLK 62 (82)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4479999999999999999999887764
No 124
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=63.59 E-value=2.2 Score=32.22 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=15.9
Q ss_pred CCCCCCCCCCcccccCCCceecCcCceee
Q 010689 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVL 30 (504)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vl 30 (504)
+.||.||... .-.-||.+||+-=
T Consensus 31 ~~c~~cG~~~------~pH~vc~~CG~Y~ 53 (60)
T 2zjr_Z 31 TECPQCHGKK------LSHHICPNCGYYD 53 (60)
T ss_dssp EECTTTCCEE------CTTBCCTTTCBSS
T ss_pred eECCCCCCEe------CCceEcCCCCcCC
Confidence 4688888752 3456888888643
No 125
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=63.48 E-value=5.1 Score=29.95 Aligned_cols=28 Identities=4% Similarity=0.050 Sum_probs=24.4
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
...|.+|||...|+|+.||++++.....
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQIEAKALR 51 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4799999999999999999998876543
No 126
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=63.24 E-value=3.4 Score=33.10 Aligned_cols=27 Identities=19% Similarity=0.616 Sum_probs=18.6
Q ss_pred CCCCCCCCCcccccCCCceecCcCceee
Q 010689 3 WCSSCARHVTGHRPYDSQLCCDRCGKVL 30 (504)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vl 30 (504)
+||+|+... +.++....+.|..||...
T Consensus 27 wCP~C~~~~-~~~~~~~~v~C~~C~~~F 53 (86)
T 2ct7_A 27 WCAQCSFGF-IYEREQLEATCPQCHQTF 53 (86)
T ss_dssp CCSSSCCCE-ECCCSCSCEECTTTCCEE
T ss_pred ECcCCCchh-eecCCCCceEeCCCCCcc
Confidence 799888753 334445567888888764
No 127
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=63.08 E-value=6.7 Score=38.76 Aligned_cols=35 Identities=14% Similarity=0.167 Sum_probs=29.2
Q ss_pred HHHhcCCCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 227 SALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 227 Aa~~~g~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
+...+.-.+++++||+.+|||+.|||+-|.++.+.
T Consensus 14 a~l~~~~~~~~~ela~~l~vS~~tIrRdL~~l~~~ 48 (315)
T 2w48_A 14 AQLYYEQDMTQAQIARELGIYRTTISRLLKRGREQ 48 (315)
T ss_dssp HHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 33345667999999999999999999999988753
No 128
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=62.30 E-value=2.8 Score=29.94 Aligned_cols=29 Identities=21% Similarity=0.454 Sum_probs=20.1
Q ss_pred CCCCCCCCCC-ccccc-CCCceecCcCceee
Q 010689 2 VWCSSCARHV-TGHRP-YDSQLCCDRCGKVL 30 (504)
Q Consensus 2 ~~Cp~Cgs~~-iv~D~-~~G~~VC~~CG~Vl 30 (504)
..|.+|+.+. ..+.. .+|..+|..||.-.
T Consensus 5 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~ 35 (46)
T 1gnf_A 5 RECVNCGATATPLWRRDRTGHYLCNACGLYH 35 (46)
T ss_dssp CCCTTTCCCCCSSCBCCTTCCCBCSHHHHHH
T ss_pred CCCCCcCCCCCCcCccCCCCCccchHHHHHH
Confidence 3689999874 34442 36888999999743
No 129
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=61.72 E-value=7.4 Score=31.02 Aligned_cols=29 Identities=10% Similarity=0.243 Sum_probs=26.5
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
+-.+|+.+||+.+|++.+|+++.++.+.+
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~~ 62 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLIE 62 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 56799999999999999999999999864
No 130
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=61.45 E-value=8.5 Score=31.48 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=27.2
Q ss_pred cCCCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 231 HGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 231 ~g~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
.|.++|..+||+.+||+.+||++.++.+..
T Consensus 30 ~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~ 59 (110)
T 1q1h_A 30 KGTEMTDEEIANQLNIKVNDVRKKLNLLEE 59 (110)
T ss_dssp HCSCBCHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 476799999999999999999999998875
No 131
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=61.42 E-value=8.9 Score=33.58 Aligned_cols=45 Identities=13% Similarity=-0.081 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHHHhcCCCCcHHHHHHHhCcChHHHHHHHHHHHHH
Q 010689 115 TEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (504)
Q Consensus 115 ~~~vaAACLYiACR~~~~p~tL~dIs~~~~vs~~~Lg~~~~~L~~~ 160 (504)
...-+-+.+|++-+ .+.|.+..+||+.++++...|.+.+..|.+.
T Consensus 13 ~~yAl~~L~~La~~-~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~ 57 (149)
T 1ylf_A 13 FSIAVHILSILKNN-PSSLCTSDYMAESVNTNPVVIRKIMSYLKQA 57 (149)
T ss_dssp HHHHHHHHHHHHHS-CGGGCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34456677788764 5668999999999999999999999998874
No 132
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=61.34 E-value=8.4 Score=29.28 Aligned_cols=28 Identities=11% Similarity=0.024 Sum_probs=24.5
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
...|.++||...|+++.||+.++.....
T Consensus 30 ~g~s~~eIA~~l~is~~tV~~~~~r~~~ 57 (79)
T 1x3u_A 30 AGLPNKSIAYDLDISPRTVEVHRANVMA 57 (79)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4578999999999999999998887764
No 133
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=60.94 E-value=1.6e+02 Score=30.56 Aligned_cols=25 Identities=0% Similarity=-0.035 Sum_probs=22.3
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHH
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIE 257 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE 257 (504)
...|+++||..+|||..|||+++..
T Consensus 394 e~~TleEIAe~LgIS~erVRqi~~R 418 (438)
T 1l9z_H 394 REHTLEEVGAYFGVTRERIRQIENK 418 (438)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 6899999999999999999977644
No 134
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=60.52 E-value=47 Score=32.74 Aligned_cols=100 Identities=8% Similarity=-0.085 Sum_probs=74.2
Q ss_pred CCccchHHHHHHhhCCCCCHHHHHHHHHHHHHhccc---ccccCCChhHHHHHHHHHHHHhc-CCCCCHhhHHhhhccCH
Q 010689 173 VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRD---WITTGRKPSGLCGAALYVSALTH-GLKFSKSDIVKIVHICE 248 (504)
Q Consensus 173 ~dP~~~I~r~~~~L~~~l~~~V~~~A~~I~~~~~~~---~l~~GR~P~~IAAAalylAa~~~-g~~~t~keIa~v~~Vse 248 (504)
+.-..||.|+...-. ++..+.-.|+-.++++... ...+.....-+--+||.+|+... +.-.+-+..|++.||+.
T Consensus 75 ISI~~Yl~RI~k~t~--ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl 152 (293)
T 2pmi_B 75 ISIFNYFIRLTKFSS--LEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRC 152 (293)
T ss_dssp SCHHHHHHHHHHTTT--CCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCH
T ss_pred CcHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCH
Confidence 334456666665555 7888888888888888652 23456778889999999999976 45678899999999999
Q ss_pred HHHHHHHHHhhccCCCCCC--hHHHHHH
Q 010689 249 ATLMKRLIEFENTDSGSLT--IEDFMAR 274 (504)
Q Consensus 249 ~TIrkr~kE~~~t~~~~lt--~~~~~~~ 274 (504)
..|..-=++|...-.=.|. .++|.+-
T Consensus 153 ~ELN~LE~eFL~lLdf~L~V~~ee~~~c 180 (293)
T 2pmi_B 153 HELNILENDFLKRVNYRIIPRDHNITLC 180 (293)
T ss_dssp HHHHHHHHHHHHTTTTCCSCCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCceeeCHHHHHHH
Confidence 9999888888876555553 4556553
No 135
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=60.14 E-value=9.9 Score=27.98 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=23.7
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhh
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~ 259 (504)
...|.++||...|+|+.||++++....
T Consensus 30 ~g~s~~eIA~~lgis~~tv~~~~~ra~ 56 (70)
T 2o8x_A 30 LGLSYADAAAVCGCPVGTIRSRVARAR 56 (70)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 458999999999999999999887754
No 136
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=59.41 E-value=9.3 Score=28.89 Aligned_cols=26 Identities=0% Similarity=-0.063 Sum_probs=22.8
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHh
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEF 258 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~ 258 (504)
...|.+|||...|+|+.||++++...
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra 54 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKA 54 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 57999999999999999999876554
No 137
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=59.21 E-value=6.1 Score=31.66 Aligned_cols=26 Identities=8% Similarity=0.253 Sum_probs=24.1
Q ss_pred CCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 235 FSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 235 ~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
.|..+||+.+||+..||++++..+..
T Consensus 31 ~sa~eLAk~LgiSk~aVr~~L~~Le~ 56 (82)
T 1oyi_A 31 ATAAQLTRQLNMEKREVNKALYDLQR 56 (82)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 88899999999999999999998864
No 138
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=59.16 E-value=6.3 Score=31.92 Aligned_cols=29 Identities=7% Similarity=0.037 Sum_probs=25.9
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
.-.++++++|+.++||+.|||+=+.++.+
T Consensus 14 ~g~vsv~eLA~~l~VS~~TIRrDL~~Le~ 42 (87)
T 2k02_A 14 QGRMEAKQLSARLQTPQPLIDAMLERMEA 42 (87)
T ss_dssp SCSEEHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred cCCCcHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45789999999999999999999988764
No 139
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=59.14 E-value=9.5 Score=34.87 Aligned_cols=31 Identities=23% Similarity=0.296 Sum_probs=28.6
Q ss_pred hcCCCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 230 THGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 230 ~~g~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
.+|.+.|++|||+.+|++..|++++++.+.+
T Consensus 20 ~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~ 50 (196)
T 3k2z_A 20 KNGYPPSVREIARRFRITPRGALLHLIALEK 50 (196)
T ss_dssp HHSSCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HhCCCCCHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 4688999999999999999999999999875
No 140
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=58.91 E-value=9 Score=30.41 Aligned_cols=27 Identities=26% Similarity=0.207 Sum_probs=23.3
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhh
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~ 259 (504)
...|.++||..+|+++.||++++....
T Consensus 52 ~g~s~~eIA~~lgis~~tV~~~l~ra~ 78 (92)
T 3hug_A 52 RGWSTAQIATDLGIAEGTVKSRLHYAV 78 (92)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 457999999999999999998887654
No 141
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=58.77 E-value=9 Score=30.54 Aligned_cols=29 Identities=10% Similarity=0.244 Sum_probs=26.2
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
-+.+..+|++.+|++.+||+++++.+.+.
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~ 63 (98)
T 3jth_A 35 QELSVGELCAKLQLSQSALSQHLAWLRRD 63 (98)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 46899999999999999999999998753
No 142
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=58.67 E-value=18 Score=29.25 Aligned_cols=39 Identities=15% Similarity=0.337 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHhCcChHHHHHHHHH
Q 010689 118 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 156 (504)
Q Consensus 118 vaAACLYiACR~~~~p~tL~dIs~~~~vs~~~Lg~~~~~ 156 (504)
+..++-||--...+.+.++.++|+.++++...|.+.|++
T Consensus 5 i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 43 (107)
T 2k9s_A 5 VREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQ 43 (107)
T ss_dssp HHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 445566665554447899999999999999999877664
No 143
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=58.54 E-value=18 Score=33.39 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=27.0
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
..++|+++||..+|++..|+.+-+++|.+-
T Consensus 191 ~~~lt~~~lA~~lG~sr~tvsR~l~~L~~~ 220 (243)
T 3la7_A 191 DLKLSHQAIAEAIGSTRVTVTRLLGDLREK 220 (243)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred eccCCHHHHHHHHCCcHHHHHHHHHHHHHC
Confidence 367899999999999999999999998853
No 144
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=58.49 E-value=22 Score=28.47 Aligned_cols=40 Identities=13% Similarity=0.054 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHhCcChHHHHHHHHHH
Q 010689 118 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQL 157 (504)
Q Consensus 118 vaAACLYiACR~~~~p~tL~dIs~~~~vs~~~Lg~~~~~L 157 (504)
+..+.-||--....-+.++.++|+.++++...|.+.|++.
T Consensus 4 ~~~i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 4 KELIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3344556665545558999999999999999998776643
No 145
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=58.38 E-value=16 Score=32.78 Aligned_cols=29 Identities=17% Similarity=0.225 Sum_probs=26.7
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
++.|+++||..+|++..|+.+-+++|.+-
T Consensus 168 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 196 (220)
T 3dv8_A 168 LKITHETIANHLGSHREVITRMLRYFQVE 196 (220)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 57899999999999999999999999864
No 146
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=58.29 E-value=4.7 Score=36.85 Aligned_cols=25 Identities=16% Similarity=0.530 Sum_probs=21.1
Q ss_pred CCCCCCCCCcccccCCCceecCcCcee
Q 010689 3 WCSSCARHVTGHRPYDSQLCCDRCGKV 29 (504)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VC~~CG~V 29 (504)
.||.|++..+ +..+|.+.|..||..
T Consensus 44 ACp~CnKKV~--~~~~g~~~CekC~~~ 68 (172)
T 3u50_C 44 RCTCQGKSVL--KYHGDSFFCESCQQF 68 (172)
T ss_dssp ECTTSCCCEE--EETTTEEEETTTTEE
T ss_pred hchhhCCEee--eCCCCeEECCCCCCC
Confidence 5999998843 556799999999998
No 147
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=58.29 E-value=3.7 Score=30.35 Aligned_cols=10 Identities=30% Similarity=1.026 Sum_probs=4.5
Q ss_pred ecCcCceeec
Q 010689 22 CCDRCGKVLE 31 (504)
Q Consensus 22 VC~~CG~Vle 31 (504)
+|+.||.|.+
T Consensus 5 ~C~vCGyvYd 14 (54)
T 4rxn_A 5 TCTVCGYIYD 14 (54)
T ss_dssp EETTTCCEEC
T ss_pred ECCCCCeEEC
Confidence 4444444443
No 148
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=58.25 E-value=5.3 Score=36.10 Aligned_cols=30 Identities=27% Similarity=0.617 Sum_probs=20.3
Q ss_pred CCCCCCCCCCCccccc---CCCceecCcCceee
Q 010689 1 MVWCSSCARHVTGHRP---YDSQLCCDRCGKVL 30 (504)
Q Consensus 1 m~~Cp~Cgs~~iv~D~---~~G~~VC~~CG~Vl 30 (504)
+..||.||....+..+ ..-..+|..||.+.
T Consensus 3 ~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~~~~ 35 (189)
T 3cng_A 3 MKFCSQCGGEVILRIPEGDTLPRYICPKCHTIH 35 (189)
T ss_dssp CCBCTTTCCBCEEECCTTCSSCEEEETTTTEEE
T ss_pred cccCchhCCccccccccCCCCcceECCCCCCcc
Confidence 4589999998644332 12357999999543
No 149
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=58.19 E-value=11 Score=31.90 Aligned_cols=38 Identities=11% Similarity=0.157 Sum_probs=30.0
Q ss_pred HHHHHHHhcCCC-CCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 223 ALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 223 alylAa~~~g~~-~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
.||.+-.-++-+ .|+.+||+.++++.+||.++++.|.+
T Consensus 30 ~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~ 68 (123)
T 3r0a_A 30 NVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHE 68 (123)
T ss_dssp HHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344443345555 89999999999999999999998875
No 150
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=58.18 E-value=7.1 Score=32.52 Aligned_cols=28 Identities=11% Similarity=0.062 Sum_probs=23.3
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhh
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFE 259 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~ 259 (504)
+-..||++||+.+|+|.+||.+-=+.+.
T Consensus 56 ~ge~TQREIA~~lGiS~stISRi~r~L~ 83 (101)
T 1jhg_A 56 RGEMSQRELKNELGAGIATITRGSNSLK 83 (101)
T ss_dssp HCCSCHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHCCChhhhhHHHHHHH
Confidence 3469999999999999999998755554
No 151
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=58.05 E-value=3.5 Score=35.16 Aligned_cols=31 Identities=16% Similarity=0.367 Sum_probs=0.0
Q ss_pred CCCCCCCCC--------------CcccccCC-CceecCcCceeecc
Q 010689 2 VWCSSCARH--------------VTGHRPYD-SQLCCDRCGKVLED 32 (504)
Q Consensus 2 ~~Cp~Cgs~--------------~iv~D~~~-G~~VC~~CG~Vlee 32 (504)
+.||.||+. ...+.... -..+|..||-++-+
T Consensus 3 M~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE~~~d 48 (133)
T 3o9x_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMN 48 (133)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEESSSSCEECC
T ss_pred cCCCcCCCCceeeceEEEEEEECCEEEEECCCceeECCCCCCEeec
No 152
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=58.02 E-value=7.4 Score=30.72 Aligned_cols=28 Identities=0% Similarity=-0.022 Sum_probs=24.1
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
...|.++||...|+|..||++++.....
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~ 64 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALR 64 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6799999999999999999988765543
No 153
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=57.71 E-value=8.5 Score=36.50 Aligned_cols=43 Identities=16% Similarity=0.188 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHhcCCCCcHHHHHHHhCcChHHHHHHHHHHHHHhc
Q 010689 116 EQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLY 162 (504)
Q Consensus 116 ~~vaAACLYiACR~~~~p~tL~dIs~~~~vs~~~Lg~~~~~L~~~L~ 162 (504)
..++=|.||++ +.|.++.+++.+++++...+......|...+.
T Consensus 17 ~~~iEAlLf~a----~epvs~~~La~~l~~~~~~v~~~l~~L~~~y~ 59 (219)
T 2z99_A 17 KRVLEALLLVI----DTPVTADALAAATEQPVYRVAAKLQLMADELT 59 (219)
T ss_dssp HHHHHHHHHHC----SSCBCHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc----CCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHh
Confidence 35666888875 78999999999999999999999888888773
No 154
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=57.40 E-value=9.7 Score=30.02 Aligned_cols=30 Identities=10% Similarity=0.204 Sum_probs=26.8
Q ss_pred cCCCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 231 HGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 231 ~g~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
.+-+.++.+|++.++++.+|+++.++.+.+
T Consensus 35 ~~~~~s~~ela~~l~is~~tvs~~l~~L~~ 64 (99)
T 3cuo_A 35 GSPGTSAGELTRITGLSASATSQHLARMRD 64 (99)
T ss_dssp TCCSEEHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred hCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 355789999999999999999999999875
No 155
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=57.17 E-value=14 Score=32.79 Aligned_cols=29 Identities=14% Similarity=0.229 Sum_probs=26.3
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
+++|+++||..+|+|..|+.+-+++|.+-
T Consensus 138 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 166 (195)
T 3b02_A 138 VTVSHEEIADATASIRESVSKVLADLRRE 166 (195)
T ss_dssp EECCHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 57899999999999999999999999753
No 156
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=57.01 E-value=9.4 Score=35.45 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=24.7
Q ss_pred cCCCCCHhhHHhhhccCHHHHHHHHHHhh
Q 010689 231 HGLKFSKSDIVKIVHICEATLMKRLIEFE 259 (504)
Q Consensus 231 ~g~~~t~keIa~v~~Vse~TIrkr~kE~~ 259 (504)
+....||.+||..+|||..||.+.++.-.
T Consensus 21 y~~g~tQ~eIA~~lGiSr~~VSR~L~~A~ 49 (192)
T 1zx4_A 21 KNDGMSQKDIAAKEGLSQAKVTRALQAAS 49 (192)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHhCcCHHHHHHHHHHhc
Confidence 34559999999999999999999987643
No 157
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=56.64 E-value=19 Score=30.33 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=27.6
Q ss_pred cCCCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 231 HGLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 231 ~g~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
.+-.+++++||+.++++.+||++.++.+.+-
T Consensus 28 ~~~~~s~~ela~~l~is~~tv~~~l~~Le~~ 58 (139)
T 2x4h_A 28 SGEGAKINRIAKDLKIAPSSVFEEVSHLEEK 58 (139)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHHhCCChHHHHHHHHHHHHC
Confidence 3567899999999999999999999998753
No 158
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=56.42 E-value=5 Score=30.63 Aligned_cols=23 Identities=17% Similarity=0.275 Sum_probs=20.6
Q ss_pred CCCHhhHHhhhccCHHHHHHHHH
Q 010689 234 KFSKSDIVKIVHICEATLMKRLI 256 (504)
Q Consensus 234 ~~t~keIa~v~~Vse~TIrkr~k 256 (504)
.+|++|||+.+|||..||.+-+.
T Consensus 9 ~~t~~diA~~aGVS~sTVSr~ln 31 (67)
T 2l8n_A 9 AATMKDVALKAKVSTATVSRALM 31 (67)
T ss_dssp CCCHHHHHHHTTCCHHHHHHTTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHc
Confidence 47999999999999999998664
No 159
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=56.26 E-value=22 Score=32.33 Aligned_cols=30 Identities=10% Similarity=0.339 Sum_probs=26.9
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
..++|+++||..+|++..|+.+-+++|.+-
T Consensus 178 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 207 (232)
T 2gau_A 178 SIYLSREELATLSNMTVSNAIRTLSTFVSE 207 (232)
T ss_dssp SCCCCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred EcccCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 367899999999999999999999999753
No 160
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=56.14 E-value=5.2 Score=38.36 Aligned_cols=29 Identities=14% Similarity=0.587 Sum_probs=20.3
Q ss_pred CCCCCCCCCCcc-c--ccCCCceecCcCceee
Q 010689 2 VWCSSCARHVTG-H--RPYDSQLCCDRCGKVL 30 (504)
Q Consensus 2 ~~Cp~Cgs~~iv-~--D~~~G~~VC~~CG~Vl 30 (504)
++||+||+..+. + ...-.+..|.+|+--.
T Consensus 35 ~yCPnCG~~~l~~f~nN~PVaDF~C~~C~Eey 66 (257)
T 4esj_A 35 SYCPNCGNNPLNHFENNRPVADFYCNHCSEEF 66 (257)
T ss_dssp CCCTTTCCSSCEEC----CCCEEECTTTCCEE
T ss_pred CcCCCCCChhhhhccCCCcccccccCCcchhh
Confidence 489999997652 2 2234789999998644
No 161
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=56.11 E-value=11 Score=31.81 Aligned_cols=30 Identities=17% Similarity=0.295 Sum_probs=27.1
Q ss_pred cCCCCCHhhHHhhh--ccCHHHHHHHHHHhhcc
Q 010689 231 HGLKFSKSDIVKIV--HICEATLMKRLIEFENT 261 (504)
Q Consensus 231 ~g~~~t~keIa~v~--~Vse~TIrkr~kE~~~t 261 (504)
+| +.|..+||..+ ++|..+|++|++.+.+.
T Consensus 25 ~g-~~s~~eLA~~l~~giS~~aVs~rL~~Le~~ 56 (111)
T 3b73_A 25 EG-NGSPKELEDRDEIRISKSSVSRRLKKLADH 56 (111)
T ss_dssp HS-CBCHHHHHTSTTCCSCHHHHHHHHHHHHHT
T ss_pred cC-CCCHHHHHHHHhcCCCHHHHHHHHHHHHHC
Confidence 34 89999999999 99999999999998864
No 162
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=56.10 E-value=18 Score=32.60 Aligned_cols=29 Identities=17% Similarity=0.279 Sum_probs=26.6
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
.++|+++||..+|+|..|+.+-+++|.+-
T Consensus 166 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 194 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVLLNDFKKM 194 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 68999999999999999999999999753
No 163
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=55.91 E-value=15 Score=28.86 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=28.1
Q ss_pred CCCCcHHHHHHHhCcChHHHHHHHHHHHHHhcc
Q 010689 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 163 (504)
Q Consensus 131 ~~p~tL~dIs~~~~vs~~~Lg~~~~~L~~~L~i 163 (504)
|.|.++.||++.++++..++.+-...|.+.=.+
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I 54 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVL 54 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSE
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcE
Confidence 899999999999999999988877777765444
No 164
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=55.74 E-value=10 Score=30.55 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=26.1
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
-+.+..+|++.+|++.+||+++++.+.+.
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~ 63 (102)
T 3pqk_A 35 GEFSVGELEQQIGIGQPTLSQQLGVLRES 63 (102)
T ss_dssp CCBCHHHHHHHHTCCTTHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 46899999999999999999999998753
No 165
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=55.11 E-value=8.9 Score=30.87 Aligned_cols=27 Identities=11% Similarity=0.164 Sum_probs=23.3
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhh
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~ 259 (504)
...|.++||...|+|+.||++++....
T Consensus 41 ~g~s~~eIA~~l~is~~tV~~~l~r~~ 67 (95)
T 3c57_A 41 EGLTNKQIADRMFLAEKTVKNYVSRLL 67 (95)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 346889999999999999998887665
No 166
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=55.02 E-value=12 Score=33.91 Aligned_cols=29 Identities=3% Similarity=0.155 Sum_probs=26.0
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
+-.+|.+++|+.++||..||+++++.+.+
T Consensus 34 ~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~ 62 (187)
T 1j5y_A 34 KEPVSGAQLAEELSVSRQVIVQDIAYLRS 62 (187)
T ss_dssp SSCBCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44589999999999999999999998875
No 167
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=54.92 E-value=9.1 Score=30.71 Aligned_cols=28 Identities=18% Similarity=0.342 Sum_probs=24.4
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
...|.++||..+++|+.||+.+++.+..
T Consensus 43 ~G~s~~eIA~~L~iS~~TV~~~~~~i~~ 70 (90)
T 3ulq_B 43 KGFTNQEIADALHLSKRSIEYSLTSIFN 70 (90)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3468999999999999999999888764
No 168
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=53.54 E-value=3.4 Score=29.03 Aligned_cols=28 Identities=25% Similarity=0.565 Sum_probs=19.9
Q ss_pred CCCCCCCCCC-ccccc-CCCceecCcCcee
Q 010689 2 VWCSSCARHV-TGHRP-YDSQLCCDRCGKV 29 (504)
Q Consensus 2 ~~Cp~Cgs~~-iv~D~-~~G~~VC~~CG~V 29 (504)
..|.+|+.+. ..+.. .+|..+|..||.-
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~ 31 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLF 31 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHH
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHH
Confidence 3689999874 34442 3688999999964
No 169
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=53.44 E-value=18 Score=27.17 Aligned_cols=33 Identities=12% Similarity=0.192 Sum_probs=28.5
Q ss_pred HhcCCCCcHHHHHHHhCcChHHHHHHHHHHHHH
Q 010689 128 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (504)
Q Consensus 128 R~~~~p~tL~dIs~~~~vs~~~Lg~~~~~L~~~ 160 (504)
+.++.|.++.|||..++++...+.+....|.+.
T Consensus 20 ~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~ 52 (67)
T 2heo_A 20 SDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKE 52 (67)
T ss_dssp HHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred HHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 346788999999999999999999888887764
No 170
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=53.24 E-value=26 Score=32.35 Aligned_cols=50 Identities=6% Similarity=-0.009 Sum_probs=32.6
Q ss_pred CCCCcHHHHHHHhCcChHHHHHHHHHHHHHhcccccccccccCCccchHH
Q 010689 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLH 180 (504)
Q Consensus 131 ~~p~tL~dIs~~~~vs~~~Lg~~~~~L~~~L~i~~~~~~~~~~dP~~~I~ 180 (504)
..|.+..+||+.+|++...+.|+.++|.+.=-|......+...|+..+-.
T Consensus 191 ~~~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~~~~i~I~d~~~L~~ 240 (243)
T 3la7_A 191 DLKLSHQAIAEAIGSTRVTVTRLLGDLREKKMISIHKKKITVHKPVTLSR 240 (243)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEECC------
T ss_pred eccCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEEEcCCEEEECCHHHHHh
Confidence 35789999999999999999999999987543433222233456654433
No 171
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=53.22 E-value=8.7 Score=30.48 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=24.2
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
...|.++||...|+|+.||+.++.....
T Consensus 43 ~g~s~~eIA~~l~is~~tV~~~l~r~~~ 70 (91)
T 2rnj_A 43 KGYSNQEIASASHITIKTVKTHVSNILS 70 (91)
T ss_dssp TTCCTTHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3578899999999999999998887664
No 172
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=53.06 E-value=6.9 Score=38.08 Aligned_cols=33 Identities=12% Similarity=0.378 Sum_probs=23.6
Q ss_pred CCCCCCCCCCCcccccCCCceecCcCceeeccCc
Q 010689 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLEDHN 34 (504)
Q Consensus 1 m~~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vlee~~ 34 (504)
+..|+.||+..... ...-..+|..||.+.-.++
T Consensus 107 ~~fC~~CG~~~~~~-~~~~~~~C~~C~~~~yp~~ 139 (269)
T 1vk6_A 107 HKYCGYCGHEMYPS-KTEWAMLCSHCRERYYPQI 139 (269)
T ss_dssp TSBCTTTCCBEEEC-SSSSCEEESSSSCEECCCC
T ss_pred CCccccCCCcCccC-CCceeeeCCCCCCEecCCC
Confidence 45899999875433 2445789999999876543
No 173
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=53.03 E-value=17 Score=30.22 Aligned_cols=36 Identities=0% Similarity=-0.124 Sum_probs=28.5
Q ss_pred HHHHHhcCCCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 225 YVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 225 ylAa~~~g~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
-+|...+-...||.+||+..|+|..||.+-++.-.+
T Consensus 25 ~~A~lyYv~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~ 60 (101)
T 2w7n_A 25 EIARGVLVDGKPQATFATSLGLTRGAVSQAVHRVWA 60 (101)
T ss_dssp HHHHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334444567899999999999999999988877653
No 174
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=52.81 E-value=19 Score=28.54 Aligned_cols=30 Identities=27% Similarity=0.245 Sum_probs=26.8
Q ss_pred cCCCCCHhhHHhhhccCHHH-HHHHHHHhhc
Q 010689 231 HGLKFSKSDIVKIVHICEAT-LMKRLIEFEN 260 (504)
Q Consensus 231 ~g~~~t~keIa~v~~Vse~T-Irkr~kE~~~ 260 (504)
++..+++++||+.++++.+| +.+.++.+.+
T Consensus 27 ~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~ 57 (95)
T 2pg4_A 27 KGYEPSLAEIVKASGVSEKTFFMGLKDRLIR 57 (95)
T ss_dssp TTCCCCHHHHHHHHCCCHHHHHTTHHHHHHH
T ss_pred cCCCCCHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 45579999999999999999 9999998875
No 175
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=52.80 E-value=31 Score=28.50 Aligned_cols=29 Identities=10% Similarity=0.235 Sum_probs=26.4
Q ss_pred cCCCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 231 HGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 231 ~g~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
++ .+++++|++.++++.+|+.+.++.+.+
T Consensus 50 ~~-~~t~~ela~~l~~~~~tvs~~l~~L~~ 78 (140)
T 2nnn_A 50 TG-PCPQNQLGRLTAMDAATIKGVVERLDK 78 (140)
T ss_dssp HS-SBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cC-CCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44 899999999999999999999999875
No 176
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=52.52 E-value=27 Score=27.89 Aligned_cols=48 Identities=10% Similarity=0.142 Sum_probs=37.2
Q ss_pred HHHHHHHhcCCCCCHhhHHhhhccCHHHHHHHHHHhhccCCCCCChHHHHHHH
Q 010689 223 ALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 275 (504)
Q Consensus 223 alylAa~~~g~~~t~keIa~v~~Vse~TIrkr~kE~~~t~~~~lt~~~~~~~~ 275 (504)
.-||-....+-+.++.+||+.+|+|+.++.+.+++.. .+|+.+|....
T Consensus 8 ~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~-----g~s~~~~~~~~ 55 (103)
T 3lsg_A 8 QNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKNF-----GIPFQDYLLQK 55 (103)
T ss_dssp HHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHHH-----SSCHHHHHHHH
T ss_pred HHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHH-----CcCHHHHHHHH
Confidence 3355555455589999999999999999999999876 45777776543
No 177
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=51.92 E-value=9.5 Score=32.68 Aligned_cols=32 Identities=13% Similarity=0.305 Sum_probs=21.5
Q ss_pred CCCCCCCCCCcccc---------cCCCceecCcCceeeccC
Q 010689 2 VWCSSCARHVTGHR---------PYDSQLCCDRCGKVLEDH 33 (504)
Q Consensus 2 ~~Cp~Cgs~~iv~D---------~~~G~~VC~~CG~Vlee~ 33 (504)
..||.||+...++= +-+-+++|.+||..-.++
T Consensus 73 ~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w~~n 113 (122)
T 1twf_I 73 RECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSD 113 (122)
T ss_dssp CCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECC
T ss_pred CCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCEeccC
Confidence 47999999854431 123368999999865444
No 178
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=51.77 E-value=7.6 Score=32.05 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=25.5
Q ss_pred CCCC-CHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 232 GLKF-SKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 232 g~~~-t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
|-++ +..++|+.++||..|||+.|+.|..
T Consensus 40 g~~lps~~eLa~~lgVSr~tVr~al~~L~~ 69 (102)
T 2b0l_A 40 NEGLLVASKIADRVGITRSVIVNALRKLES 69 (102)
T ss_dssp TEEEECHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4455 8999999999999999999999875
No 179
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=51.55 E-value=4.7 Score=31.59 Aligned_cols=10 Identities=20% Similarity=0.597 Sum_probs=7.5
Q ss_pred CCCCCCCCCC
Q 010689 2 VWCSSCARHV 11 (504)
Q Consensus 2 ~~Cp~Cgs~~ 11 (504)
+.||.||+..
T Consensus 3 m~Cp~Cg~~~ 12 (78)
T 3ga8_A 3 MKCPVCHQGE 12 (78)
T ss_dssp CBCTTTSSSB
T ss_pred eECCCCCCCe
Confidence 5799998753
No 180
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=51.12 E-value=4.5 Score=31.58 Aligned_cols=27 Identities=22% Similarity=0.466 Sum_probs=13.6
Q ss_pred CCCCCCCCC-ccccc---CCCceecCcCceee
Q 010689 3 WCSSCARHV-TGHRP---YDSQLCCDRCGKVL 30 (504)
Q Consensus 3 ~Cp~Cgs~~-iv~D~---~~G~~VC~~CG~Vl 30 (504)
.|.+||.+. ..+.. ..| .+|..||+-.
T Consensus 10 ~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~ 40 (71)
T 2kae_A 10 QCSNCSVTETIRWRNIRSKEG-IQCNACFIYQ 40 (71)
T ss_dssp CCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHH
T ss_pred cCCccCCCCCCccccCCCCCC-ccchHHHHHH
Confidence 466666552 23432 234 5666666543
No 181
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=50.70 E-value=24 Score=32.09 Aligned_cols=31 Identities=13% Similarity=0.155 Sum_probs=27.7
Q ss_pred cCCCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 231 HGLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 231 ~g~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
..++.|+++||..+|++..|+.+-+++|.+-
T Consensus 175 ~~l~~t~~~iA~~lg~sr~tvsR~l~~L~~~ 205 (237)
T 3fx3_A 175 VTLPYDKMLIAGRLGMKPESLSRAFSRLKAA 205 (237)
T ss_dssp EECCSCTHHHHHHTTCCHHHHHHHHHHHGGG
T ss_pred EEecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 3467889999999999999999999999864
No 182
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=50.62 E-value=26 Score=28.27 Aligned_cols=50 Identities=14% Similarity=0.116 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHhhhccCHHHHHHHHHHhhccCCCCCChHHHHHH
Q 010689 219 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMAR 274 (504)
Q Consensus 219 IAAAalylAa~~~g~~~t~keIa~v~~Vse~TIrkr~kE~~~t~~~~lt~~~~~~~ 274 (504)
|..+.-||-.... .++++.+||+.+|+|+.++.+.+++.. .+|+.+|...
T Consensus 7 i~~~~~~i~~~~~-~~~~~~~lA~~~~~S~~~l~r~fk~~~-----G~s~~~~~~~ 56 (108)
T 3oou_A 7 IQNVLSYITEHFS-EGMSLKTLGNDFHINAVYLGQLFQKEM-----GEHFTDYLNR 56 (108)
T ss_dssp HHHHHHHHHHHTT-SCCCHHHHHHHHTSCHHHHHHHHHHHH-----SSCHHHHHHH
T ss_pred HHHHHHHHHHHhc-CCCCHHHHHHHHCcCHHHHHHHHHHHH-----CcCHHHHHHH
Confidence 4444556665544 489999999999999999999999876 4577777654
No 183
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=50.62 E-value=15 Score=29.24 Aligned_cols=29 Identities=17% Similarity=0.179 Sum_probs=25.9
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
-+.+..+|++.++++.+||++.++.+.+.
T Consensus 42 ~~~~~~eLa~~l~is~~tv~~~L~~L~~~ 70 (96)
T 1y0u_A 42 KGRSEEEIMQTLSLSKKQLDYHLKVLEAG 70 (96)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 45899999999999999999999998753
No 184
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=50.46 E-value=13 Score=29.41 Aligned_cols=28 Identities=14% Similarity=0.131 Sum_probs=25.7
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
-++++.+|++.++++.+||.+.++.+.+
T Consensus 33 ~~~s~~ela~~l~is~~tv~~~l~~L~~ 60 (109)
T 1sfx_A 33 GGMRVSEIARELDLSARFVRDRLKVLLK 60 (109)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999865
No 185
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=50.44 E-value=3.5 Score=31.70 Aligned_cols=29 Identities=28% Similarity=0.605 Sum_probs=19.1
Q ss_pred CCCCCCCCC-cccc-cCCCceecCcCceeec
Q 010689 3 WCSSCARHV-TGHR-PYDSQLCCDRCGKVLE 31 (504)
Q Consensus 3 ~Cp~Cgs~~-iv~D-~~~G~~VC~~CG~Vle 31 (504)
.|.+||.+. ..+. ..+|..+|..||....
T Consensus 11 ~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~ 41 (66)
T 4gat_A 11 TCTNCFTQTTPLWRRNPEGQPLCNACGLFLK 41 (66)
T ss_dssp CCTTTCCCCCSSCEEETTTEEECHHHHHHHH
T ss_pred CCCCCCCCCCCcCCcCCCCCCccHHHHHHHH
Confidence 688888763 2333 2357788888887654
No 186
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=50.29 E-value=8.5 Score=31.46 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=21.3
Q ss_pred CCHhhHHhhhccCHHHHHHHHHH
Q 010689 235 FSKSDIVKIVHICEATLMKRLIE 257 (504)
Q Consensus 235 ~t~keIa~v~~Vse~TIrkr~kE 257 (504)
.|++|||..+|||..||++-+..
T Consensus 21 ~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 21 KTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHcC
Confidence 79999999999999999998864
No 187
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=50.08 E-value=26 Score=31.61 Aligned_cols=29 Identities=21% Similarity=0.406 Sum_probs=26.3
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
.++|+++||..+|+|..|+.+-+++|.+-
T Consensus 176 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 204 (227)
T 3d0s_A 176 HDLTQEEIAQLVGASRETVNKALADFAHR 204 (227)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 56899999999999999999999999753
No 188
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=49.90 E-value=9.7 Score=32.65 Aligned_cols=29 Identities=24% Similarity=0.285 Sum_probs=26.0
Q ss_pred CCCC-CHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 232 GLKF-SKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 232 g~~~-t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
|.++ |.+++|...|||..|||+.|+.+..
T Consensus 35 G~~LPser~La~~~gVSr~tVReAl~~L~~ 64 (134)
T 4ham_A 35 GEKILSIREFASRIGVNPNTVSKAYQELER 64 (134)
T ss_dssp TCEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6676 7899999999999999999999874
No 189
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=49.89 E-value=19 Score=29.34 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=26.3
Q ss_pred CCCCCHhhHHhhh-ccCHHHHHHHHHHhhc
Q 010689 232 GLKFSKSDIVKIV-HICEATLMKRLIEFEN 260 (504)
Q Consensus 232 g~~~t~keIa~v~-~Vse~TIrkr~kE~~~ 260 (504)
.-+.++.+|++.+ +++.+|+.++++.+.+
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~ 54 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEA 54 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 4578999999999 9999999999999875
No 190
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=49.82 E-value=16 Score=32.47 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=26.3
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
++.|+++||+.+|++..|+.+-+++|.+-
T Consensus 166 ~~~t~~~iA~~lg~sr~tvsR~l~~L~~~ 194 (210)
T 3ryp_A 166 IKITRQEIGQIVGCSRETVGRILKMLEDQ 194 (210)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred eccCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 47899999999999999999999998753
No 191
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=49.42 E-value=17 Score=32.32 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=26.3
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
.++|+++||..+|++..|+.+-+++|.+-
T Consensus 163 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 191 (207)
T 2oz6_A 163 IKITRQEIGRIVGCSREMVGRVLKSLEEQ 191 (207)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 47899999999999999999999998753
No 192
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=49.41 E-value=4.1 Score=31.06 Aligned_cols=29 Identities=24% Similarity=0.579 Sum_probs=18.9
Q ss_pred CCCCCCCCC-ccccc-CCCceecCcCceeec
Q 010689 3 WCSSCARHV-TGHRP-YDSQLCCDRCGKVLE 31 (504)
Q Consensus 3 ~Cp~Cgs~~-iv~D~-~~G~~VC~~CG~Vle 31 (504)
.|.+||.+. ..+.. ..|..+|..||.-..
T Consensus 9 ~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~ 39 (63)
T 3dfx_A 9 SCANCQTTTTTLWRRNANGDPVCNACGLYYK 39 (63)
T ss_dssp CCTTTCCSCCSSCCCCTTSCCCCHHHHHHHH
T ss_pred cCCCcCCCCCCccCCCCCCCchhhHHHHHHH
Confidence 588888763 34442 357788888887654
No 193
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=49.18 E-value=17 Score=32.51 Aligned_cols=44 Identities=16% Similarity=0.164 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHhCcChHHHHHHHHHHHHHh
Q 010689 117 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVL 161 (504)
Q Consensus 117 ~vaAACLYiACR~~~~p~tL~dIs~~~~vs~~~Lg~~~~~L~~~L 161 (504)
.-+-+.+|+|-. .+.|.+..+||+.++++...|.+.+..|.+.=
T Consensus 13 yAlr~l~~La~~-~~~~~s~~~IA~~~~is~~~l~kil~~L~~aG 56 (162)
T 3k69_A 13 VAVHSILYLDAH-RDSKVASRELAQSLHLNPVMIRNILSVLHKHG 56 (162)
T ss_dssp HHHHHHHHHHTT-TTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC-CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 344466788764 36789999999999999999999999988753
No 194
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=48.76 E-value=26 Score=28.27 Aligned_cols=50 Identities=12% Similarity=0.167 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhcCCCCCHhhHHhhhccCHHHHHHHHHHhhccCCCCCChHHHHHH
Q 010689 220 CGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMAR 274 (504)
Q Consensus 220 AAAalylAa~~~g~~~t~keIa~v~~Vse~TIrkr~kE~~~t~~~~lt~~~~~~~ 274 (504)
.-+.-||-....+.++++.+||+.+|+|..++.+.+++.. .+|+.++...
T Consensus 6 ~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~-----G~s~~~~~~~ 55 (107)
T 2k9s_A 6 REACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQL-----GISVLSWRED 55 (107)
T ss_dssp HHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHHH-----SSCHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHHHH-----CcCHHHHHHH
Confidence 3334455544444789999999999999999999999865 3567777654
No 195
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=48.51 E-value=47 Score=30.55 Aligned_cols=33 Identities=9% Similarity=0.086 Sum_probs=28.7
Q ss_pred CCCcHHHHHHHhCcChHHHHHHHHHHHHHhccc
Q 010689 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (504)
Q Consensus 132 ~p~tL~dIs~~~~vs~~~Lg~~~~~L~~~L~i~ 164 (504)
.|.+..+||+.+|++..++.++.++|.+.=-|.
T Consensus 176 ~~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~ 208 (250)
T 3e6c_C 176 MPLSQKSIGEITGVHHVTVSRVLASLKRENILD 208 (250)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeE
Confidence 588999999999999999999999998864343
No 196
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=48.49 E-value=5.5 Score=31.90 Aligned_cols=15 Identities=20% Similarity=0.556 Sum_probs=12.2
Q ss_pred CceecCcCceeeccC
Q 010689 19 SQLCCDRCGKVLEDH 33 (504)
Q Consensus 19 G~~VC~~CG~Vlee~ 33 (504)
..++|+.||.|.++.
T Consensus 26 ~~y~C~vCGyvYD~~ 40 (81)
T 2kn9_A 26 KLFRCIQCGFEYDEA 40 (81)
T ss_dssp CEEEETTTCCEEETT
T ss_pred ceEEeCCCCEEEcCC
Confidence 478999999998753
No 197
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=48.49 E-value=5.9 Score=30.56 Aligned_cols=28 Identities=29% Similarity=0.651 Sum_probs=17.8
Q ss_pred CCCCCCCCCCCcccc---cCCCceecCcCce
Q 010689 1 MVWCSSCARHVTGHR---PYDSQLCCDRCGK 28 (504)
Q Consensus 1 m~~Cp~Cgs~~iv~D---~~~G~~VC~~CG~ 28 (504)
|.+|.-||...-... ...|.+||.+|=.
T Consensus 18 ~~~CSFCGK~e~eV~~LIaGpgvyICdeCI~ 48 (67)
T 1ovx_A 18 LLYCSFCGKSQHEVRKLIAGPSVYICDECVD 48 (67)
T ss_dssp CCCCTTTCCCTTTSSSEEECSSCEEEHHHHH
T ss_pred CcEecCCCCCHHHHcccCCCCCCChhHHHHH
Confidence 457999998742221 1246789998843
No 198
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=48.13 E-value=20 Score=29.61 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=24.1
Q ss_pred CCHhhHHhhh-ccCHHHHHHHHHHhhcc
Q 010689 235 FSKSDIVKIV-HICEATLMKRLIEFENT 261 (504)
Q Consensus 235 ~t~keIa~v~-~Vse~TIrkr~kE~~~t 261 (504)
.++.+|++.+ |++.+|+.++++.+.+.
T Consensus 43 ~~~~eL~~~l~gis~~~ls~~L~~Le~~ 70 (111)
T 3df8_A 43 QNFNDIRSSIPGISSTILSRRIKDLIDS 70 (111)
T ss_dssp BCHHHHHHTSTTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHccCCCHHHHHHHHHHHHHC
Confidence 3499999999 99999999999998753
No 199
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=48.06 E-value=18 Score=32.22 Aligned_cols=30 Identities=20% Similarity=0.204 Sum_probs=26.9
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
.+++|+++||..+|++..|+.+-+++|.+-
T Consensus 144 ~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 173 (202)
T 2zcw_A 144 VLKATHDELAAAVGSVRETVTKVIGELARE 173 (202)
T ss_dssp EEECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 357899999999999999999999999854
No 200
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=48.03 E-value=23 Score=29.72 Aligned_cols=26 Identities=12% Similarity=0.372 Sum_probs=24.6
Q ss_pred CCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 235 FSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 235 ~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
+|+++||+.++++.+|+++.++.+..
T Consensus 52 ~t~~eLa~~l~~s~~tvs~~l~~L~~ 77 (146)
T 3tgn_A 52 LTNSELARRLNVSQAAVTKAIKSLVK 77 (146)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999998875
No 201
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=47.87 E-value=5.9 Score=32.21 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=24.6
Q ss_pred CCC-CHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 233 LKF-SKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 233 ~~~-t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
.++ +..++|+.++||..||++.|+.+..
T Consensus 33 ~~lps~~eLa~~~~vSr~tvr~al~~L~~ 61 (102)
T 1v4r_A 33 DTLPSVADIRAQFGVAAKTVSRALAVLKS 61 (102)
T ss_dssp SBCCCHHHHHHHSSSCTTHHHHHTTTTTT
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 445 8999999999999999999998764
No 202
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=47.86 E-value=6.5 Score=35.85 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=20.6
Q ss_pred CCCCCCCCCCccccc--CC--CceecCcCceee
Q 010689 2 VWCSSCARHVTGHRP--YD--SQLCCDRCGKVL 30 (504)
Q Consensus 2 ~~Cp~Cgs~~iv~D~--~~--G~~VC~~CG~Vl 30 (504)
|.|+.|++....+.- .. =.+.|..||..-
T Consensus 97 VlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~~ 129 (170)
T 2g2k_A 97 VLCPECENPETDLHVNPKKQTIGNSCKACGYRG 129 (170)
T ss_dssp HSCTTTSSSCEEEEEETTTTEEEEEETTTCCCC
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccccCCcc
Confidence 579999998644322 23 378899999863
No 203
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=47.72 E-value=17 Score=33.37 Aligned_cols=29 Identities=10% Similarity=0.227 Sum_probs=26.5
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
-++|+.+||+.+|+|.+|++++++.+.+.
T Consensus 32 ~~~s~~eLA~~lglS~stv~~~l~~Le~~ 60 (192)
T 1uly_A 32 KEMTISQLSEILGKTPQTIYHHIEKLKEA 60 (192)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 47999999999999999999999998753
No 204
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=47.19 E-value=19 Score=29.48 Aligned_cols=28 Identities=11% Similarity=-0.005 Sum_probs=25.7
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
-+.++.+|++.+|++.+||.+.++.+.+
T Consensus 37 ~~~s~~eLa~~lgis~stvs~~L~~L~~ 64 (108)
T 2kko_A 37 GERAVEAIATATGMNLTTASANLQALKS 64 (108)
T ss_dssp CCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5689999999999999999999999875
No 205
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=47.19 E-value=22 Score=30.82 Aligned_cols=45 Identities=9% Similarity=-0.044 Sum_probs=35.8
Q ss_pred CchhHHHHHHHHHHHHhcCCCCcHHHHHHHhCcChHHHHHHHHHHHHH
Q 010689 113 RRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (504)
Q Consensus 113 R~~~~vaAACLYiACR~~~~p~tL~dIs~~~~vs~~~Lg~~~~~L~~~ 160 (504)
.+...-+-+.+|+|-+ .+ + +..+||+..+++...|.+.+.+|.+.
T Consensus 6 ~~~~yAl~~L~~La~~-~~-~-s~~~IA~~~~i~~~~l~kIl~~L~~a 50 (145)
T 1xd7_A 6 SRLAVAIHILSLISMD-EK-T-SSEIIADSVNTNPVVVRRMISLLKKA 50 (145)
T ss_dssp CHHHHHHHHHHHHHTC-SC-C-CHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhC-CC-C-CHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3445566678888854 34 5 99999999999999999999988774
No 206
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=46.93 E-value=28 Score=29.18 Aligned_cols=30 Identities=17% Similarity=0.092 Sum_probs=27.0
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
+-+.|.++||+..+|+..++++-+..+...
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~il~~L~~~ 53 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQLVSPLRNA 53 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred CCcCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 567999999999999999999999998753
No 207
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=46.73 E-value=23 Score=32.11 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=26.5
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
.+.|+++||..+|+|..|+.+-+++|.+-
T Consensus 174 ~~~t~~~iA~~lg~sr~tvsR~l~~L~~~ 202 (231)
T 3e97_A 174 LPLGTQDIMARTSSSRETVSRVLKRLEAH 202 (231)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 57899999999999999999999999854
No 208
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=46.61 E-value=14 Score=35.65 Aligned_cols=37 Identities=19% Similarity=0.163 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHhhhccCHHHHHHHHH
Q 010689 219 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 256 (504)
Q Consensus 219 IAAAalylAa~~~g~~-~t~keIa~v~~Vse~TIrkr~k 256 (504)
|..|++-+.+. .|+. .|+.+||+.+||+..||-..+.
T Consensus 125 il~aa~~l~~~-~G~~~~T~~~IA~~AGvs~gtlY~yF~ 162 (311)
T 4ich_A 125 ILETAWRLIAR-RGYHNVRIHDIASELGTSNATIHYHFP 162 (311)
T ss_dssp HHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHH-cCCccCCHHHHHHHhCCCchhHHHhCC
Confidence 44444433332 4764 9999999999999999976654
No 209
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=46.56 E-value=32 Score=27.91 Aligned_cols=50 Identities=12% Similarity=0.034 Sum_probs=38.2
Q ss_pred CCCchhHHHH--HHHHHHHHhcCCCCcHHHHHHHh-CcChHHHHHHHHHHHHHhc
Q 010689 111 KGRRTEQVQA--SCLYLACRQKSKPFLLIDFSNYL-NINVYELGAVYLQLCQVLY 162 (504)
Q Consensus 111 rGR~~~~vaA--ACLYiACR~~~~p~tL~dIs~~~-~vs~~~Lg~~~~~L~~~L~ 162 (504)
++|+...+.| .+.|++-.. +..+|.+|+..+ |.+..++..+++++.+.+.
T Consensus 24 ~~R~~~i~~aRqiamyL~r~~--t~~Sl~~IG~~fggrdHsTV~ha~~ki~~~~~ 76 (94)
T 1j1v_A 24 KRRSRSVARPRQMAMALAKEL--TNHSLPEIGDAFGGRDHTTVLHACRKIEQLRE 76 (94)
T ss_dssp CCCCHHHHHHHHHHHHHHHHH--SCCCHHHHHHHTTSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHH--HCcCHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 4455544444 567775443 578999999999 7999999999999998875
No 210
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=46.10 E-value=18 Score=29.41 Aligned_cols=28 Identities=11% Similarity=0.177 Sum_probs=25.5
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
-+.++.+|++.+|++.+|+.++++.+.+
T Consensus 38 ~~~~~~ela~~l~is~stvs~~L~~L~~ 65 (106)
T 1r1u_A 38 SEASVGHISHQLNLSQSNVSHQLKLLKS 65 (106)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4579999999999999999999999874
No 211
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=45.84 E-value=13 Score=30.98 Aligned_cols=29 Identities=21% Similarity=0.117 Sum_probs=25.5
Q ss_pred CCCC-CHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 232 GLKF-SKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 232 g~~~-t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
|.++ |..++|...|||..|||+.|+.+..
T Consensus 30 G~~lPs~~~La~~~~vSr~tvr~al~~L~~ 59 (113)
T 3tqn_A 30 GEMIPSIRKISTEYQINPLTVSKAYQSLLD 59 (113)
T ss_dssp TCEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4455 8999999999999999999999874
No 212
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=45.81 E-value=11 Score=37.56 Aligned_cols=11 Identities=27% Similarity=0.588 Sum_probs=6.6
Q ss_pred ceecCcCceee
Q 010689 20 QLCCDRCGKVL 30 (504)
Q Consensus 20 ~~VC~~CG~Vl 30 (504)
..+|..||.-+
T Consensus 253 ~e~C~~C~~Yl 263 (309)
T 2fiy_A 253 AETCPSCQGYL 263 (309)
T ss_dssp EEEETTTTEEE
T ss_pred EEEcccccchH
Confidence 45666666555
No 213
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=45.50 E-value=23 Score=33.18 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=26.3
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
+++|+.+||..+|++..|+.+-+++|.+-
T Consensus 216 l~lt~~~lA~~lG~sr~tvsR~l~~L~~~ 244 (260)
T 3kcc_A 216 IKITRQEIGQIVGCSRETVGRILKMLEDQ 244 (260)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 47899999999999999999999998853
No 214
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=45.42 E-value=67 Score=26.70 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=26.6
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
+-++++++||+.++++.+|+.+.++.+..
T Consensus 48 ~~~~~~~~la~~l~i~~~~vs~~l~~Le~ 76 (147)
T 2hr3_A 48 GGDVTPSELAAAERMRSSNLAALLRELER 76 (147)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHHH
Confidence 55799999999999999999999999875
No 215
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=45.21 E-value=7 Score=28.53 Aligned_cols=12 Identities=33% Similarity=1.060 Sum_probs=7.9
Q ss_pred eecCcCceeecc
Q 010689 21 LCCDRCGKVLED 32 (504)
Q Consensus 21 ~VC~~CG~Vlee 32 (504)
++|+.||.|.++
T Consensus 3 ~~C~~CGyvYd~ 14 (52)
T 1yk4_A 3 LSCKICGYIYDE 14 (52)
T ss_dssp EEESSSSCEEET
T ss_pred EEeCCCCeEECC
Confidence 567777777654
No 216
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=44.93 E-value=21 Score=29.68 Aligned_cols=29 Identities=3% Similarity=0.005 Sum_probs=25.8
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
-+.++.+|++.+|++.+|+.++++.+.+.
T Consensus 33 ~~~~~~eLa~~lgis~stvs~~L~~L~~~ 61 (118)
T 2jsc_A 33 GVCYPGQLAAHLGLTRSNVSNHLSCLRGC 61 (118)
T ss_dssp TCCSTTTHHHHHSSCHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 35788999999999999999999998753
No 217
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=44.81 E-value=16 Score=30.92 Aligned_cols=29 Identities=17% Similarity=0.150 Sum_probs=25.5
Q ss_pred CCCC-CHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 232 GLKF-SKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 232 g~~~-t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
|.++ |..++|...|||..|||+.|..+..
T Consensus 34 g~~Lps~~~La~~~~vSr~tvr~Al~~L~~ 63 (125)
T 3neu_A 34 EDKLPSVREMGVKLAVNPNTVSRAYQELER 63 (125)
T ss_dssp TCBCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4556 6999999999999999999999864
No 218
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=44.78 E-value=6.9 Score=39.81 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=14.7
Q ss_pred eecCcCceeeccCccccccccc
Q 010689 21 LCCDRCGKVLEDHNFSTEATFV 42 (504)
Q Consensus 21 ~VC~~CG~Vlee~~id~~~~f~ 42 (504)
..|.+||.|.-....+.+..|.
T Consensus 54 ~~C~~Cg~v~~~~~~~~~~~y~ 75 (416)
T 4e2x_A 54 GRCDSCEMVQLTEEVPRDLMFH 75 (416)
T ss_dssp EEETTTCCEEESSCCCHHHHSS
T ss_pred EECCCCCceeecCcCCHHHhcc
Confidence 5799999998765544443443
No 219
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=44.77 E-value=8.5 Score=38.42 Aligned_cols=29 Identities=21% Similarity=0.460 Sum_probs=19.5
Q ss_pred CCCCCCCCCCcc--ccc---CCC--ceecCcCceee
Q 010689 2 VWCSSCARHVTG--HRP---YDS--QLCCDRCGKVL 30 (504)
Q Consensus 2 ~~Cp~Cgs~~iv--~D~---~~G--~~VC~~CG~Vl 30 (504)
..||.||+..+. +.. .+| .++|.-||+-=
T Consensus 183 ~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W 218 (309)
T 2fiy_A 183 TLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEW 218 (309)
T ss_dssp SSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEE
T ss_pred CCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEE
Confidence 479999998532 221 356 68998888754
No 220
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=44.70 E-value=20 Score=32.27 Aligned_cols=29 Identities=10% Similarity=0.145 Sum_probs=26.5
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
..+.|+++||..+|++..|+.+-+++|.+
T Consensus 176 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 204 (227)
T 3dkw_A 176 EIPVAKQLVAGHLSIQPETFSRIMHRLGD 204 (227)
T ss_dssp CCCSCTHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999875
No 221
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=44.56 E-value=25 Score=29.22 Aligned_cols=28 Identities=18% Similarity=0.068 Sum_probs=25.7
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
..+++++||+.++++.+|+.+.++.+..
T Consensus 49 ~~~~~~ela~~l~~~~~tvs~~l~~Le~ 76 (141)
T 3bro_A 49 KEVLQRDLESEFSIKSSTATVLLQRMEI 76 (141)
T ss_dssp SCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCcchHHHHHHHHHH
Confidence 3799999999999999999999998875
No 222
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=44.52 E-value=15 Score=29.97 Aligned_cols=27 Identities=15% Similarity=0.053 Sum_probs=23.4
Q ss_pred CCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 234 KFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 234 ~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
..+.+|||..+++++.||+.++..+..
T Consensus 49 G~s~~EIA~~L~iS~~TV~~~l~ri~~ 75 (99)
T 1p4w_A 49 GFLVTEIAKKLNRSIKTISSQKKSAMM 75 (99)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 457899999999999999998877654
No 223
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=44.41 E-value=44 Score=28.02 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=27.3
Q ss_pred hcCCCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 230 THGLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 230 ~~g~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
.++ .+|+++||+.++++.+|+.+.++.+..-
T Consensus 51 ~~~-~~t~~ela~~l~~~~~tvs~~l~~Le~~ 81 (148)
T 3nrv_A 51 SAS-DCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
T ss_dssp HSS-SBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 344 8999999999999999999999998763
No 224
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=44.34 E-value=16 Score=30.01 Aligned_cols=25 Identities=4% Similarity=0.120 Sum_probs=22.1
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHH
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIE 257 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE 257 (504)
...|.+|||...|+|..||++++..
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~r 62 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAK 62 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 5799999999999999999987654
No 225
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=44.30 E-value=36 Score=27.40 Aligned_cols=40 Identities=20% Similarity=0.255 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHhCcChHHHHHHHHHH
Q 010689 117 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQL 157 (504)
Q Consensus 117 ~vaAACLYiACR~~~~p~tL~dIs~~~~vs~~~Lg~~~~~L 157 (504)
.+..+.-||--.... ++++.++|+.++++...|.+.|++.
T Consensus 6 ~i~~~~~~i~~~~~~-~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 6 IIQNVLSYITEHFSE-GMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp HHHHHHHHHHHHTTS-CCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 345566666655544 8999999999999999998776643
No 226
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=44.25 E-value=15 Score=29.52 Aligned_cols=28 Identities=14% Similarity=0.360 Sum_probs=25.7
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
-+.+..+|++.+|++.+|+.++++.+.+
T Consensus 40 ~~~~~~ela~~l~is~stvs~hL~~L~~ 67 (99)
T 2zkz_A 40 KALNVTQIIQILKLPQSTVSQHLCKMRG 67 (99)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHBT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3689999999999999999999999875
No 227
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=44.14 E-value=14 Score=31.52 Aligned_cols=29 Identities=21% Similarity=0.134 Sum_probs=25.5
Q ss_pred CCCC-CHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 232 GLKF-SKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 232 g~~~-t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
|.++ |..++|...|||..|||+.|+.+..
T Consensus 32 G~~lPse~~La~~~~vSr~tvr~Al~~L~~ 61 (126)
T 3by6_A 32 NDQLPSVRETALQEKINPNTVAKAYKELEA 61 (126)
T ss_dssp TCEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4455 8999999999999999999999864
No 228
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=44.10 E-value=44 Score=27.21 Aligned_cols=41 Identities=20% Similarity=0.330 Sum_probs=36.3
Q ss_pred HHHHHHhcCC-CCcHHHHHHHh-CcChHHHHHHHHHHHHHhcc
Q 010689 123 LYLACRQKSK-PFLLIDFSNYL-NINVYELGAVYLQLCQVLYI 163 (504)
Q Consensus 123 LYiACR~~~~-p~tL~dIs~~~-~vs~~~Lg~~~~~L~~~L~i 163 (504)
|..+|++.|. |.++.-||..+ +-+...+...|..|.+.+.-
T Consensus 44 IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 44 ILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT 86 (95)
T ss_dssp HHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 6778999887 89999999999 49999999999999998853
No 229
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=44.00 E-value=42 Score=26.95 Aligned_cols=49 Identities=12% Similarity=0.104 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhcCCCCCHhhHHhhhccCHHHHHHHHHHhhccCCCCCChHHHHHH
Q 010689 220 CGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMAR 274 (504)
Q Consensus 220 AAAalylAa~~~g~~~t~keIa~v~~Vse~TIrkr~kE~~~t~~~~lt~~~~~~~ 274 (504)
.-+.-||.... ..++++.+||..+|+|+.++.+.+++.. .+|+.+|...
T Consensus 5 ~~~~~~i~~~~-~~~~~~~~lA~~~~~s~~~l~r~fk~~~-----G~s~~~~~~~ 53 (108)
T 3mn2_A 5 RQVEEYIEANW-MRPITIEKLTALTGISSRGIFKAFQRSR-----GYSPMAFAKR 53 (108)
T ss_dssp HHHHHHHHHHT-TSCCCHHHHHHHHTCCHHHHHHHHHHHT-----SSCHHHHHHH
T ss_pred HHHHHHHHHcc-cCCCCHHHHHHHHCCCHHHHHHHHHHHh-----CcCHHHHHHH
Confidence 33444555544 4569999999999999999999999875 4577777654
No 230
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=43.98 E-value=23 Score=31.62 Aligned_cols=39 Identities=15% Similarity=0.068 Sum_probs=31.2
Q ss_pred HHHHHHHhcCCCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 223 ALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 223 alylAa~~~g~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
.+|||..-.+-++|.++||+..+|+...+++-+..+...
T Consensus 33 L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~a 71 (159)
T 3lwf_A 33 TLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNA 71 (159)
T ss_dssp HHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 446665333457999999999999999999999998754
No 231
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=43.97 E-value=18 Score=30.91 Aligned_cols=29 Identities=17% Similarity=0.168 Sum_probs=25.8
Q ss_pred CCCC-CHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 232 GLKF-SKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 232 g~~~-t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
|.++ |..++|...|||..|||+.|+.+..
T Consensus 25 G~~LPse~~La~~~gvSr~tVr~Al~~L~~ 54 (129)
T 2ek5_A 25 DQRVPSTNELAAFHRINPATARNGLTLLVE 54 (129)
T ss_dssp TSCBCCHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4566 8999999999999999999999875
No 232
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=43.88 E-value=25 Score=29.75 Aligned_cols=28 Identities=14% Similarity=0.179 Sum_probs=25.7
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
-.+++++||+.++|+.+||++.++.+..
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~~Le~ 48 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKLDK 48 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4699999999999999999999998875
No 233
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=43.85 E-value=14 Score=29.11 Aligned_cols=28 Identities=21% Similarity=0.226 Sum_probs=25.7
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
-+.++.+|++.++++.+|+.++++.+.+
T Consensus 29 ~~~~~~ela~~l~is~~tvs~~l~~L~~ 56 (100)
T 1ub9_A 29 RKAPFSQIQKVLDLTPGNLDSHIRVLER 56 (100)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3689999999999999999999999875
No 234
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=43.82 E-value=23 Score=32.41 Aligned_cols=29 Identities=17% Similarity=0.311 Sum_probs=26.4
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
.+.|+.+||+.+|++..|+.+-+++|.+-
T Consensus 185 ~~~t~~~lA~~lG~sr~tvsR~l~~l~~~ 213 (232)
T 1zyb_A 185 FKVKMDDLARCLDDTRLNISKTLNELQDN 213 (232)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred ecCCHHHHHHHhCCChhHHHHHHHHHHHC
Confidence 57899999999999999999999999753
No 235
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=43.74 E-value=7.3 Score=33.06 Aligned_cols=8 Identities=25% Similarity=1.057 Sum_probs=4.4
Q ss_pred ecCcCcee
Q 010689 22 CCDRCGKV 29 (504)
Q Consensus 22 VC~~CG~V 29 (504)
.|..||.-
T Consensus 92 ~CP~Cgs~ 99 (119)
T 2kdx_A 92 VCEKCHSK 99 (119)
T ss_dssp CCSSSSSC
T ss_pred cCccccCC
Confidence 56666554
No 236
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=43.67 E-value=18 Score=29.98 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=26.4
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
.-+.+..+|++.+|++.+|+.+.++.+.+.
T Consensus 29 ~~~~~~~eLa~~l~is~~tvs~hL~~L~~~ 58 (118)
T 3f6o_A 29 RGPATVSELAKPFDMALPSFMKHIHFLEDS 58 (118)
T ss_dssp TCCEEHHHHHTTCCSCHHHHHHHHHHHHHT
T ss_pred hCCCCHHHHHHHhCcCHHHHHHHHHHHHHC
Confidence 356799999999999999999999998753
No 237
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=43.53 E-value=15 Score=30.86 Aligned_cols=27 Identities=11% Similarity=0.187 Sum_probs=23.4
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhh
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~ 259 (504)
...|.++||...|+|+.||++++....
T Consensus 37 ~g~s~~EIA~~lgiS~~tV~~~l~ra~ 63 (113)
T 1s7o_A 37 DDYSLAEIADEFGVSRQAVYDNIKRTE 63 (113)
T ss_dssp TCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 457899999999999999998887654
No 238
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=43.12 E-value=11 Score=35.31 Aligned_cols=28 Identities=14% Similarity=0.423 Sum_probs=20.4
Q ss_pred CCCCCCCCCCcccccCCCceecCcCceeec
Q 010689 2 VWCSSCARHVTGHRPYDSQLCCDRCGKVLE 31 (504)
Q Consensus 2 ~~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vle 31 (504)
..|++||..... ......+|..||.|..
T Consensus 11 ~~Cw~C~~~~~~--~~~~~~fC~~c~~~q~ 38 (207)
T 3bvo_A 11 PRCWNCGGPWGP--GREDRFFCPQCRALQA 38 (207)
T ss_dssp CBCSSSCCBCCS--SCSCCCBCTTTCCBCC
T ss_pred CCCCCCCCCccc--ccccccccccccccCC
Confidence 379999975211 1357899999999875
No 239
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=42.93 E-value=22 Score=29.64 Aligned_cols=27 Identities=11% Similarity=0.215 Sum_probs=23.4
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhh
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~ 259 (504)
...|.++||...|+|+.||++++....
T Consensus 40 ~g~s~~EIA~~lgiS~~tV~~~l~ra~ 66 (113)
T 1xsv_A 40 EDYSLSEIADTFNVSRQAVYDNIRRTG 66 (113)
T ss_dssp SCCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 557999999999999999998876654
No 240
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=42.73 E-value=2.2e+02 Score=29.12 Aligned_cols=25 Identities=0% Similarity=-0.012 Sum_probs=17.9
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHH
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIE 257 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE 257 (504)
...|+++||...|||..|||+++..
T Consensus 379 e~~Tl~EIA~~lgiS~erVrqi~~r 403 (423)
T 2a6h_F 379 REHTLEEVGAFFGVTRERIRQIENK 403 (423)
T ss_dssp -----CHHHHSSSSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 6899999999999999999976643
No 241
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=42.60 E-value=8 Score=28.16 Aligned_cols=26 Identities=31% Similarity=0.737 Sum_probs=15.7
Q ss_pred CCCCCCCCCCCcccc---cCCCceecCcC
Q 010689 1 MVWCSSCARHVTGHR---PYDSQLCCDRC 26 (504)
Q Consensus 1 m~~Cp~Cgs~~iv~D---~~~G~~VC~~C 26 (504)
|.+|.-||...-... ...|.++|.+|
T Consensus 11 ~~~CSFCGk~~~ev~~LIaGpgv~IC~eC 39 (51)
T 2ds5_A 11 LLYCSFCGKSQHEVRKLIAGPSVYICDEC 39 (51)
T ss_dssp CCBCTTTCCBTTTSSCEEECSSCEEEHHH
T ss_pred CcEecCCCCCHHHhcccCCCCCCEehHHH
Confidence 357888887632211 12366788887
No 242
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=42.57 E-value=15 Score=28.90 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=22.5
Q ss_pred CCHhhHHhhhccCHHHHHHHHHHhh
Q 010689 235 FSKSDIVKIVHICEATLMKRLIEFE 259 (504)
Q Consensus 235 ~t~keIa~v~~Vse~TIrkr~kE~~ 259 (504)
.++.+||..+||+..||++.++.+.
T Consensus 39 ~s~~~iA~~~gIs~sTl~rW~k~~~ 63 (87)
T 2elh_A 39 ESKASVARDIGVPESTLRGWCKNED 63 (87)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 6899999999999999999887665
No 243
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=42.22 E-value=27 Score=30.35 Aligned_cols=29 Identities=14% Similarity=0.078 Sum_probs=26.2
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
-..++.+|++.++++.+|+.++++.+.+.
T Consensus 36 g~~~~~eLa~~lgis~~tls~~L~~Le~~ 64 (146)
T 2f2e_A 36 GLTRFGEFQKSLGLAKNILAARLRNLVEH 64 (146)
T ss_dssp TCCSHHHHHHHHCCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 36899999999999999999999998753
No 244
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=42.17 E-value=8.6 Score=29.83 Aligned_cols=7 Identities=29% Similarity=0.947 Sum_probs=3.5
Q ss_pred ecCcCce
Q 010689 22 CCDRCGK 28 (504)
Q Consensus 22 VC~~CG~ 28 (504)
+|..||.
T Consensus 42 ~CP~Cga 48 (70)
T 1dx8_A 42 MCPACRS 48 (70)
T ss_dssp BCTTTCC
T ss_pred cCCCCCC
Confidence 4555554
No 245
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=42.03 E-value=24 Score=28.04 Aligned_cols=27 Identities=22% Similarity=0.243 Sum_probs=24.5
Q ss_pred CCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 234 KFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 234 ~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
..|+.+||...||+..||.+.++.+..
T Consensus 23 g~s~~~ia~~~gIs~~tl~rW~~~~~~ 49 (97)
T 2jn6_A 23 GASLQQIANDLGINRVTLKNWIIKYGS 49 (97)
T ss_dssp GSCHHHHHHHHTSCHHHHHHHHHHHCC
T ss_pred CChHHHHHHHHCcCHHHHHHHHHHHhh
Confidence 578999999999999999999988765
No 246
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=42.02 E-value=12 Score=28.51 Aligned_cols=24 Identities=25% Similarity=0.721 Sum_probs=14.5
Q ss_pred CCCCCCCCCcccccCCCceecCcCce
Q 010689 3 WCSSCARHVTGHRPYDSQLCCDRCGK 28 (504)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VC~~CG~ 28 (504)
.|..||...- .+ ....+-|..||.
T Consensus 23 ~C~~Cg~~~~-l~-~~~~iRC~~CG~ 46 (63)
T 3h0g_L 23 LCADCGARNT-IQ-AKEVIRCRECGH 46 (63)
T ss_dssp BCSSSCCBCC-CC-SSSCCCCSSSCC
T ss_pred ECCCCCCeee-cC-CCCceECCCCCc
Confidence 5777776532 22 235577777775
No 247
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=41.88 E-value=32 Score=29.86 Aligned_cols=43 Identities=21% Similarity=0.165 Sum_probs=31.8
Q ss_pred CCChhHHHHHHHHHHHHhcCC-CCCHhhHHhhhccCHHHHHHHHH
Q 010689 213 GRKPSGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (504)
Q Consensus 213 GR~P~~IAAAalylAa~~~g~-~~t~keIa~v~~Vse~TIrkr~k 256 (504)
+..|.-|.-||+=+-++ .|+ ..|+.+||+.+|||..||-.++.
T Consensus 6 ~~~~~~Il~aA~~lf~~-~G~~~~t~~~IA~~agvs~~tlY~~F~ 49 (192)
T 2zcm_A 6 HHMKDKIIDNAITLFSE-KGYDGTTLDDISKSVNIKKASLYYHYD 49 (192)
T ss_dssp --CHHHHHHHHHHHHHH-HCTTTCCHHHHHHHTTCCHHHHHHHTC
T ss_pred hhhHHHHHHHHHHHHHH-cCcccCCHHHHHHHhCCChHHHHHHCC
Confidence 34556666666655543 577 59999999999999999987664
No 248
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=41.76 E-value=49 Score=29.64 Aligned_cols=34 Identities=3% Similarity=-0.045 Sum_probs=29.0
Q ss_pred CCCcHHHHHHHhCcChHHHHHHHHHHHHHhcccc
Q 010689 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIAD 165 (504)
Q Consensus 132 ~p~tL~dIs~~~~vs~~~Lg~~~~~L~~~L~i~~ 165 (504)
.|.+..+||+.+|++...+.+..++|.+.=-+..
T Consensus 166 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 199 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVLLNDFKKMGILER 199 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEE
Confidence 6899999999999999999999999987543443
No 249
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=41.69 E-value=12 Score=34.10 Aligned_cols=28 Identities=18% Similarity=0.625 Sum_probs=22.1
Q ss_pred CCCC--CCCCCcccccCCCceecCcCceeecc
Q 010689 3 WCSS--CARHVTGHRPYDSQLCCDRCGKVLED 32 (504)
Q Consensus 3 ~Cp~--Cgs~~iv~D~~~G~~VC~~CG~Vlee 32 (504)
.||. |+... .+..+|.+.|..||...++
T Consensus 45 aC~~~~CnKKv--~~~~~g~~~CekC~~~~~~ 74 (181)
T 1l1o_C 45 ACPTQDCNKKV--IDQQNGLYRCEKCDTEFPN 74 (181)
T ss_dssp BCCSTTCCCBC--EEETTTEEEETTTTEEESS
T ss_pred CCCchhcCCcc--ccCCCCeEECCCCCCcCCC
Confidence 5999 99874 3456799999999987653
No 250
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=41.45 E-value=26 Score=31.63 Aligned_cols=28 Identities=14% Similarity=0.315 Sum_probs=25.9
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
++.|+++||..+|++..|+.+-+++|.+
T Consensus 186 ~~lt~~~lA~~lg~sr~tvsR~l~~L~~ 213 (230)
T 3iwz_A 186 LRVSRQELARLVGCSREMAGRVLKKLQA 213 (230)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 4689999999999999999999999875
No 251
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=41.34 E-value=39 Score=29.76 Aligned_cols=33 Identities=12% Similarity=-0.056 Sum_probs=28.5
Q ss_pred CCCcHHHHHHHhCcChHHHHHHHHHHHHHhccc
Q 010689 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (504)
Q Consensus 132 ~p~tL~dIs~~~~vs~~~Lg~~~~~L~~~L~i~ 164 (504)
.|.+..+||+.+|++...+.++.++|.+.=-+.
T Consensus 138 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~ 170 (195)
T 3b02_A 138 VTVSHEEIADATASIRESVSKVLADLRREGLIA 170 (195)
T ss_dssp EECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEE
T ss_pred ccCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 578999999999999999999999998764444
No 252
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=41.32 E-value=8.7 Score=28.33 Aligned_cols=12 Identities=25% Similarity=0.744 Sum_probs=6.8
Q ss_pred eecCcCceeecc
Q 010689 21 LCCDRCGKVLED 32 (504)
Q Consensus 21 ~VC~~CG~Vlee 32 (504)
++|+.||.|.++
T Consensus 4 y~C~~CGyvYd~ 15 (55)
T 2v3b_B 4 WQCVVCGFIYDE 15 (55)
T ss_dssp EEETTTCCEEET
T ss_pred EEeCCCCeEECC
Confidence 456666666543
No 253
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=41.20 E-value=16 Score=31.84 Aligned_cols=27 Identities=15% Similarity=0.142 Sum_probs=23.5
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhh
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~ 259 (504)
...|.+|||..+|+++.||++++..-.
T Consensus 108 ~g~s~~EIA~~lgis~~tV~~~l~rar 134 (157)
T 2lfw_A 108 EGFSPEDAAYLIEVDTSEVETLVTEAL 134 (157)
T ss_dssp SCCCHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 468999999999999999999887643
No 254
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=41.16 E-value=17 Score=30.96 Aligned_cols=27 Identities=11% Similarity=0.146 Sum_probs=23.3
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhh
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~ 259 (504)
...|.+|||...|+|+.||++++....
T Consensus 123 ~g~s~~EIA~~lgis~~tV~~~~~ra~ 149 (164)
T 3mzy_A 123 RGYSYREIATILSKNLKSIDNTIQRIR 149 (164)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 456999999999999999998887643
No 255
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=40.89 E-value=23 Score=27.24 Aligned_cols=24 Identities=25% Similarity=0.211 Sum_probs=20.9
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHH
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRL 255 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~ 255 (504)
....|+.++|+.+||+.+||.+-+
T Consensus 20 ~~glT~~~LA~~~Gvs~stls~~~ 43 (74)
T 1neq_A 20 KRKLSLSALSRQFGYAPTTLANAL 43 (74)
T ss_dssp TTSCCHHHHHHHHSSCHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 456899999999999999999653
No 256
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=40.60 E-value=14 Score=36.29 Aligned_cols=45 Identities=9% Similarity=0.028 Sum_probs=31.0
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhccCCCCCChHHHHHHHhhh
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKEL 278 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~t~~~~lt~~~~~~~~~~~ 278 (504)
.-+.|.+|||+.+|||.+|+++.|+.-. .-+.-|-+-..+...++
T Consensus 7 ~~~~Ti~diA~~aGVS~~TVSrvLn~~~--~Vs~~tr~rV~~~a~~l 51 (366)
T 3h5t_A 7 QQYGTLASIAAKLGISRTTVSNAYNRPE--QLSAELRQRILDTAEDM 51 (366)
T ss_dssp CCTTHHHHHHHHHTSCHHHHHHHHHCGG--GSCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHCCCC--CCCHHHHHHHHHHHHHh
Confidence 3468999999999999999999998532 12233444455554443
No 257
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=40.57 E-value=28 Score=24.84 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=27.9
Q ss_pred CCcHHHHHHHhCcChHHHHHHHHHHHHHhccc
Q 010689 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (504)
Q Consensus 133 p~tL~dIs~~~~vs~~~Lg~~~~~L~~~L~i~ 164 (504)
..+..|||..++++..++......+.+.|+..
T Consensus 13 g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 44 (61)
T 2jpc_A 13 GYTNHGISEKLHISIKTVETHRMNMMRKLQVH 44 (61)
T ss_dssp SCCSHHHHHHTCSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHCCC
Confidence 35789999999999999999998888888764
No 258
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=40.49 E-value=54 Score=33.93 Aligned_cols=64 Identities=11% Similarity=0.129 Sum_probs=47.5
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHhc--ccccccCCChhHHHHHHHHHHHHhcCCCCCHhhHHhhh
Q 010689 180 HKFTDRLLPGGNKKVCDTARDILASMK--RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 244 (504)
Q Consensus 180 ~r~~~~L~~~l~~~V~~~A~~I~~~~~--~~~l~~GR~P~~IAAAalylAa~~~g~~~t~keIa~v~ 244 (504)
..+|.+|.. ..+++....|.+.+... +..+..+|+---|.-.|||+.|++.+..++.++|...-
T Consensus 287 ~~LC~~L~~-~~~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~~tFk~Ii~~Y 352 (411)
T 4ell_A 287 NTLCERLLS-EHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAY 352 (411)
T ss_dssp HHHHHHHCT-TSTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCCCCHHHHHHHH
T ss_pred HHHHHHhCC-CcHHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccCCCCHHHHHHHH
Confidence 455788851 22355566666666543 35788999999999999999999999888888887643
No 259
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=40.38 E-value=33 Score=29.57 Aligned_cols=29 Identities=24% Similarity=0.214 Sum_probs=26.4
Q ss_pred CCCCCHhhHHhhh-ccCHHHHHHHHHHhhc
Q 010689 232 GLKFSKSDIVKIV-HICEATLMKRLIEFEN 260 (504)
Q Consensus 232 g~~~t~keIa~v~-~Vse~TIrkr~kE~~~ 260 (504)
.-..++.|+++.+ +|+..|+.++|+++.+
T Consensus 37 ~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~ 66 (131)
T 4a5n_A 37 DGKKRFNEFRRICPSITQRMLTLQLRELEA 66 (131)
T ss_dssp TSCBCHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHhcccCHHHHHHHHHHHHH
Confidence 4578999999999 9999999999999875
No 260
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=40.27 E-value=13 Score=35.91 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=22.2
Q ss_pred CCCHhhHHhhhccCHHHHHHHHHH
Q 010689 234 KFSKSDIVKIVHICEATLMKRLIE 257 (504)
Q Consensus 234 ~~t~keIa~v~~Vse~TIrkr~kE 257 (504)
+.|.+|||+.+|||.+|+++.|+.
T Consensus 2 ~~ti~dvA~~agVS~~TVSrvln~ 25 (332)
T 2hsg_A 2 NVTIYDVAREASVSMATVSRVVNG 25 (332)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcC
Confidence 478999999999999999999985
No 261
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=40.22 E-value=33 Score=28.13 Aligned_cols=28 Identities=11% Similarity=0.218 Sum_probs=25.7
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
-..++.+||+.++++.+||.+.++.+.+
T Consensus 44 ~~~s~~ela~~l~is~stvsr~l~~Le~ 71 (119)
T 2lkp_A 44 GPLPVTDLAEAIGMEQSAVSHQLRVLRN 71 (119)
T ss_dssp CCCCHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3689999999999999999999999875
No 262
>1vzi_A Desulfoferrodoxin; ferrocyanide, microspectrophotometry, redox states, photoreduction, dinuclear iron cluster, oxidoreductase; 1.15A {Desulfovibrio baarsii} SCOP: b.1.13.1 g.41.5.2 PDB: 1vzh_A* 1vzg_A 2ji1_A 2ji2_A 2ji3_A 1dfx_A
Probab=40.17 E-value=8.5 Score=33.23 Aligned_cols=27 Identities=22% Similarity=0.475 Sum_probs=18.6
Q ss_pred CCCCCCCCCcccccCCCceecCcCceeec
Q 010689 3 WCSSCARHVTGHRPYDSQLCCDRCGKVLE 31 (504)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vle 31 (504)
.|+.||.-..+.....|.++| ||.-++
T Consensus 9 kC~~CGnivev~~~g~~~l~C--CG~~m~ 35 (126)
T 1vzi_A 9 KCEVCGNIVEVLNGGIGELVC--CNQDMK 35 (126)
T ss_dssp ECTTTCCEEEEEECCSSCEEE--TTEECE
T ss_pred EcCCCCeEEEEEcCCCcceec--CCcccc
Confidence 599998654344556678888 887654
No 263
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=40.06 E-value=20 Score=29.07 Aligned_cols=28 Identities=14% Similarity=0.204 Sum_probs=25.4
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
-+.++.+|++.++++.+||++.++.+.+
T Consensus 33 ~~~~~~ela~~l~is~~tv~~~l~~L~~ 60 (114)
T 2oqg_A 33 ADQSASSLATRLPVSRQAIAKHLNALQA 60 (114)
T ss_dssp SCBCHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3589999999999999999999999864
No 264
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=39.91 E-value=20 Score=31.12 Aligned_cols=39 Identities=10% Similarity=0.016 Sum_probs=30.5
Q ss_pred HHHHHHHhcCCCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 223 ALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 223 alylAa~~~g~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
.+|||..-.+.++|.++||+..+++..++++-+..+...
T Consensus 17 L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~a 55 (143)
T 3t8r_A 17 MISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNA 55 (143)
T ss_dssp HHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 345554322357999999999999999999999998754
No 265
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=39.91 E-value=27 Score=30.70 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHhhhccCHHHHHHHHH
Q 010689 219 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 256 (504)
Q Consensus 219 IAAAalylAa~~~g~~~t~keIa~v~~Vse~TIrkr~k 256 (504)
|..||+=+.++ .|+..|+.+||+.+||+..||-+.+.
T Consensus 18 Il~aA~~lf~~-~G~~~t~~~IA~~agvs~~tlY~~F~ 54 (196)
T 2qwt_A 18 VLEVAYDTFAA-EGLGVPMDEIARRAGVGAGTVYRHFP 54 (196)
T ss_dssp HHHHHHHHHHH-TCTTSCHHHHHHHTTSCHHHHHHHCS
T ss_pred HHHHHHHHHHh-cCCCCCHHHHHHHhCCCHHHHHHHCC
Confidence 44444433332 57889999999999999999987654
No 266
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=39.79 E-value=27 Score=28.90 Aligned_cols=51 Identities=10% Similarity=0.078 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhcCCCCCHhhHHhhhccCHHHHHHHHHHhhccCCCCCChHHHHHHH
Q 010689 218 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 275 (504)
Q Consensus 218 ~IAAAalylAa~~~g~~~t~keIa~v~~Vse~TIrkr~kE~~~t~~~~lt~~~~~~~~ 275 (504)
-+.-+.-||-... ..++++.+||..+|+|+.++.+.+++. .+|+.+|...-
T Consensus 8 ~~~~~~~~i~~~~-~~~~~~~~lA~~~~~S~~~l~r~fk~~------G~s~~~~~~~~ 58 (120)
T 3mkl_A 8 MRTRVCTVINNNI-AHEWTLARIASELLMSPSLLKKKLREE------ETSYSQLLTEC 58 (120)
T ss_dssp HHHHHHHHHHTST-TSCCCHHHHHHHTTCCHHHHHHHHHHT------TCCHHHHHHHH
T ss_pred HHHHHHHHHHHhc-cCCCCHHHHHHHHCcCHHHHHHHHHHc------CCCHHHHHHHH
Confidence 3444444554433 348999999999999999999998762 46778876543
No 267
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=39.74 E-value=41 Score=30.78 Aligned_cols=30 Identities=7% Similarity=0.171 Sum_probs=26.7
Q ss_pred CC-CCCHhhHHhhhccCH-HHHHHHHHHhhcc
Q 010689 232 GL-KFSKSDIVKIVHICE-ATLMKRLIEFENT 261 (504)
Q Consensus 232 g~-~~t~keIa~v~~Vse-~TIrkr~kE~~~t 261 (504)
.+ ++|+++||..+|++. .|+.+-+++|.+-
T Consensus 166 ~~~~~t~~~lA~~lG~sr~etvsR~l~~l~~~ 197 (238)
T 2bgc_A 166 TLDNLTMQELGYSSGIAHSSAVSRIISKLKQE 197 (238)
T ss_dssp CCSCCCHHHHHHHTTCCCHHHHHHHHHHHHHT
T ss_pred EeccCCHHHHHHHhCCChHHHHHHHHHHHHHC
Confidence 36 799999999999999 7999999999753
No 268
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=39.37 E-value=42 Score=27.24 Aligned_cols=49 Identities=14% Similarity=0.144 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcCCCCCHhhHHhhhccCHHHHHHHHHHhhccCCCCCChHHHHHH
Q 010689 220 CGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMAR 274 (504)
Q Consensus 220 AAAalylAa~~~g~~~t~keIa~v~~Vse~TIrkr~kE~~~t~~~~lt~~~~~~~ 274 (504)
.-+.-||-. ....++++.+||..+|+|+.++.+.+++.. .+|+.+|...
T Consensus 10 ~~~~~~i~~-~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~-----G~s~~~~~~~ 58 (113)
T 3oio_A 10 TEAVSLMEA-NIEEPLSTDDIAYYVGVSRRQLERLFKQYL-----GTVPSKYYLE 58 (113)
T ss_dssp HHHHHHHHT-CSSSCCCHHHHHHHHTSCHHHHHHHHHHHT-----SSCHHHHHHH
T ss_pred HHHHHHHHh-hhcCCCCHHHHHHHHCcCHHHHHHHHHHHH-----CcCHHHHHHH
Confidence 333334433 234569999999999999999999999875 4577777654
No 269
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=39.36 E-value=13 Score=27.81 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=19.9
Q ss_pred CCHhhHHhhhccCHHHHHHHHHH
Q 010689 235 FSKSDIVKIVHICEATLMKRLIE 257 (504)
Q Consensus 235 ~t~keIa~v~~Vse~TIrkr~kE 257 (504)
+|.+|+|..+|||..||.+..+.
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHC
Confidence 57899999999999999876654
No 270
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=39.29 E-value=54 Score=29.15 Aligned_cols=48 Identities=10% Similarity=-0.076 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhcC---CCCcHHHHHHHhCcChHHHHHHHHHHHHHhccc
Q 010689 117 QVQASCLYLACRQKS---KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (504)
Q Consensus 117 ~vaAACLYiACR~~~---~p~tL~dIs~~~~vs~~~Lg~~~~~L~~~L~i~ 164 (504)
.-++..|..-+...+ .|.+..+||+.+|++...+.+..++|.+.=-+.
T Consensus 150 ~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~ 200 (220)
T 3dv8_A 150 KRVASFLLEETSIEGTNELKITHETIANHLGSHREVITRMLRYFQVEGLVK 200 (220)
T ss_dssp HHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 334444443344333 588999999999999999999999998754343
No 271
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=39.27 E-value=17 Score=26.76 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=19.2
Q ss_pred CCHhhHHhhhccCHHHHHHHH
Q 010689 235 FSKSDIVKIVHICEATLMKRL 255 (504)
Q Consensus 235 ~t~keIa~v~~Vse~TIrkr~ 255 (504)
.||.++|+.+|||..||.+..
T Consensus 11 ~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 11 GTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp SSHHHHHHHHTCCHHHHHHCC
T ss_pred CCHHHHHHHhCCCHHHHHHHH
Confidence 499999999999999999875
No 272
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=39.24 E-value=44 Score=27.96 Aligned_cols=101 Identities=7% Similarity=0.037 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHHhcCCCCcHHHHHHHhCcChHHHHHHHHHHHHHhcccccccccccCCccchHHHHHHhhCCCCCHHHH
Q 010689 116 EQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVC 195 (504)
Q Consensus 116 ~~vaAACLYiACR~~~~p~tL~dIs~~~~vs~~~Lg~~~~~L~~~L~i~~~~~~~~~~dP~~~I~r~~~~L~~~l~~~V~ 195 (504)
..+..++-||--. ...++++.++|+.++++...|.+.|++. +| ..|..||.++- .
T Consensus 11 ~~i~~~~~~i~~~-~~~~~sl~~lA~~~~~S~~~l~r~fk~~---~G----------~s~~~~l~~~R-----------l 65 (129)
T 1bl0_A 11 ITIHSILDWIEDN-LESPLSLEKVSERSGYSKWHLQRMFKKE---TG----------HSLGQYIRSRK-----------M 65 (129)
T ss_dssp HHHHHHHHHHHTT-TTSCCCCHHHHHHSSSCHHHHHHHHHHH---HS----------SCHHHHHHHHH-----------H
T ss_pred HHHHHHHHHHHHc-cCCCCCHHHHHHHHCcCHHHHHHHHHHH---HC----------cCHHHHHHHHH-----------H
Confidence 3444555555433 3556999999999999999998776643 43 33555544331 1
Q ss_pred HHHHHHHHHhcccccccCCChhHHHHHHHHHHHHhcCCCCCHhhHHhhhccC-HHHHHHHHHHhhccCCCCCChHHHHHH
Q 010689 196 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC-EATLMKRLIEFENTDSGSLTIEDFMAR 274 (504)
Q Consensus 196 ~~A~~I~~~~~~~~l~~GR~P~~IAAAalylAa~~~g~~~t~keIa~v~~Vs-e~TIrkr~kE~~~t~~~~lt~~~~~~~ 274 (504)
..|.+++ . .-..++.+||..+|-+ .+...+.++... .+|+.+|++.
T Consensus 66 ~~A~~lL------------------------~----~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~-----G~tP~~yR~~ 112 (129)
T 1bl0_A 66 TEIAQKL------------------------K----ESNEPILYLAERYGFESQQTLTRTFKNYF-----DVPPHKYRMT 112 (129)
T ss_dssp HHHHHHH------------------------H----HCCCCHHHHHHHTTCSCHHHHHHHHHHHH-----SSCHHHHHTC
T ss_pred HHHHHHH------------------------H----cCCCCHHHHHHHHCCCCHHHHHHHHHHHH-----CcCHHHHHHH
Confidence 1222222 1 1235778888888875 457777777766 4678888765
No 273
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=39.17 E-value=55 Score=26.22 Aligned_cols=38 Identities=11% Similarity=0.192 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHhCcChHHHHHHHHH
Q 010689 118 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 156 (504)
Q Consensus 118 vaAACLYiACR~~~~p~tL~dIs~~~~vs~~~Lg~~~~~ 156 (504)
+..++-||.-.. ..|.++.++|..++++...|.+.|++
T Consensus 4 i~~~~~~i~~~~-~~~~~~~~lA~~~~~s~~~l~r~fk~ 41 (108)
T 3mn2_A 4 VRQVEEYIEANW-MRPITIEKLTALTGISSRGIFKAFQR 41 (108)
T ss_dssp HHHHHHHHHHHT-TSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcc-cCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 444555665444 45799999999999999999877664
No 274
>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} PDB: 2kv1_A
Probab=39.13 E-value=18 Score=31.12 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=20.6
Q ss_pred CCCCCCCCCCCcccccCCCceecCcCceeec
Q 010689 1 MVWCSSCARHVTGHRPYDSQLCCDRCGKVLE 31 (504)
Q Consensus 1 m~~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vle 31 (504)
|+.|+-=++.........|.++|..||.-|=
T Consensus 1 ~~~c~~~~ge~y~~~~~~GiY~C~~Cg~pLF 31 (124)
T 2kao_A 1 MSFCSFFGGEVFQNHFEPGVYVCAKCSYELF 31 (124)
T ss_dssp CCCCCCCCSCTTTTCCCCCEEEESSSCCCCC
T ss_pred CccccccccccccCCCCCEEEEeCCCCCccc
Confidence 6666654444322223579999999999873
No 275
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=39.11 E-value=30 Score=28.58 Aligned_cols=29 Identities=14% Similarity=0.334 Sum_probs=26.4
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
+-++++++|++.++++.+|+.+.++.+..
T Consensus 41 ~~~~~~~ela~~l~~s~~tvs~~l~~L~~ 69 (138)
T 3bpv_A 41 EPGIKQDELATFFHVDKGTIARTLRRLEE 69 (138)
T ss_dssp STTCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999875
No 276
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=39.00 E-value=34 Score=28.48 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=26.7
Q ss_pred cCCCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 231 HGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 231 ~g~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
.+-+.|+++||+.++++.+|+.+.++.+.+
T Consensus 38 ~~~~~t~~ela~~l~~~~stvs~~l~~L~~ 67 (152)
T 1ku9_A 38 SDKPLTISDIMEELKISKGNVSMSLKKLEE 67 (152)
T ss_dssp CSSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 345799999999999999999999998875
No 277
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=38.77 E-value=36 Score=28.56 Aligned_cols=28 Identities=14% Similarity=0.345 Sum_probs=25.8
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
-+.++.+|++.+|++.+||.++++.+.+
T Consensus 58 ~~~s~~ela~~lgis~stvs~~L~~Le~ 85 (122)
T 1r1t_A 58 SELCVGDLAQAIGVSESAVSHQLRSLRN 85 (122)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4689999999999999999999999886
No 278
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=38.70 E-value=25 Score=29.36 Aligned_cols=29 Identities=17% Similarity=0.186 Sum_probs=26.2
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
+-+.++.+|++.+|++.+|+.+.++.+.+
T Consensus 54 ~~~~s~~eLa~~l~is~stvs~~L~~L~~ 82 (122)
T 1u2w_A 54 DEELCVCDIANILGVTIANASHHLRTLYK 82 (122)
T ss_dssp SSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 35689999999999999999999999874
No 279
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=38.51 E-value=41 Score=28.00 Aligned_cols=28 Identities=7% Similarity=0.012 Sum_probs=24.7
Q ss_pred CCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 234 KFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 234 ~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
..+.++||..+||+..||++.++.+...
T Consensus 22 G~s~~~ia~~lgis~~Tv~r~~~~~~~~ 49 (141)
T 1u78_A 22 NVSLHEMSRKISRSRHCIRVYLKDPVSY 49 (141)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHSGGGT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHccccc
Confidence 4689999999999999999999887654
No 280
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=38.51 E-value=23 Score=28.84 Aligned_cols=28 Identities=14% Similarity=0.229 Sum_probs=24.3
Q ss_pred CCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 234 KFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 234 ~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
..+..+||..+||+..||++.++.+...
T Consensus 33 g~s~~~ia~~lgis~~Tv~~w~~~~~~~ 60 (128)
T 1pdn_C 33 GIRPCVISRQLRVSHGCVSKILNRYQET 60 (128)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHhh
Confidence 4688999999999999999988887653
No 281
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=38.40 E-value=62 Score=29.15 Aligned_cols=34 Identities=12% Similarity=0.003 Sum_probs=28.8
Q ss_pred CCCCcHHHHHHHhCcChHHHHHHHHHHHHHhccc
Q 010689 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (504)
Q Consensus 131 ~~p~tL~dIs~~~~vs~~~Lg~~~~~L~~~L~i~ 164 (504)
..|.|..+||+.+|++...+.+..++|.+.=-|.
T Consensus 178 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 211 (232)
T 2gau_A 178 SIYLSREELATLSNMTVSNAIRTLSTFVSERMLA 211 (232)
T ss_dssp SCCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEE
T ss_pred EcccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEe
Confidence 3578999999999999999999999997754343
No 282
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=38.18 E-value=20 Score=32.38 Aligned_cols=29 Identities=14% Similarity=0.239 Sum_probs=26.3
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
.++|+++||..+|++..|+.+-+++|.+-
T Consensus 162 ~~~t~~~lA~~lG~sr~tvsR~l~~L~~~ 190 (222)
T 1ft9_A 162 VDFTVEEIANLIGSSRQTTSTALNSLIKE 190 (222)
T ss_dssp ECCCHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 56899999999999999999999999753
No 283
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=38.14 E-value=21 Score=26.59 Aligned_cols=23 Identities=9% Similarity=0.023 Sum_probs=21.0
Q ss_pred CCHhhHHhhhccCHHHHHHHHHH
Q 010689 235 FSKSDIVKIVHICEATLMKRLIE 257 (504)
Q Consensus 235 ~t~keIa~v~~Vse~TIrkr~kE 257 (504)
++.+||+..+|||.+||.+..++
T Consensus 11 l~~~eva~~lgvsrstiy~~~~~ 33 (66)
T 1z4h_A 11 VDLKFIMADTGFGKTFIYDRIKS 33 (66)
T ss_dssp ECHHHHHHHHSSCHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHC
Confidence 68899999999999999988875
No 284
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=37.92 E-value=9.6 Score=32.39 Aligned_cols=34 Identities=26% Similarity=0.477 Sum_probs=23.6
Q ss_pred CCCCCCCCCCCcccc-cCCCceecCcCceeeccCc
Q 010689 1 MVWCSSCARHVTGHR-PYDSQLCCDRCGKVLEDHN 34 (504)
Q Consensus 1 m~~Cp~Cgs~~iv~D-~~~G~~VC~~CG~Vlee~~ 34 (504)
|+.||+||..+-+.. .......|..||.-+.+..
T Consensus 5 ~~~c~~c~~~n~~p~~~~~~~~~~~~~~~~~~~~~ 39 (148)
T 3p2a_A 5 NTVCTACMATNRLPEERIDDGAKCGRCGHSLFDGE 39 (148)
T ss_dssp EEECTTTCCEEEEESSCSCSCCBCTTTCCBTTCCC
T ss_pred EEECcccccccCCCCcccccCCcchhcCCccccCC
Confidence 357999999754433 3445678999999775543
No 285
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=37.32 E-value=68 Score=26.95 Aligned_cols=30 Identities=7% Similarity=0.135 Sum_probs=26.8
Q ss_pred cCCCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 231 HGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 231 ~g~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
++-.+|+++||+.++++.+|+.+.++.+..
T Consensus 51 ~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 80 (150)
T 3fm5_A 51 QAEGVNQRGVAATMGLDPSQIVGLVDELEE 80 (150)
T ss_dssp STTCCCSHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 455689999999999999999999998875
No 286
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=37.23 E-value=31 Score=26.43 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=25.6
Q ss_pred CCCCHhhHHhhh-----ccCHHHHHHHHHHhhc
Q 010689 233 LKFSKSDIVKIV-----HICEATLMKRLIEFEN 260 (504)
Q Consensus 233 ~~~t~keIa~v~-----~Vse~TIrkr~kE~~~ 260 (504)
-..|..||+..+ +|+.+||.+-|+.|.+
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~ 64 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDD 64 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 579999999999 9999999999998875
No 287
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=37.09 E-value=32 Score=31.78 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=29.8
Q ss_pred HHHHHhcCCCCCHhhHHhhhccCHHHHHHHHHHhh
Q 010689 225 YVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 259 (504)
Q Consensus 225 ylAa~~~g~~~t~keIa~v~~Vse~TIrkr~kE~~ 259 (504)
|..+.-.|+..+|+++|+.+|||++.|.+.++-..
T Consensus 33 y~r~L~~g~~~~Q~~lA~~~giS~a~VSR~L~~A~ 67 (189)
T 3mky_B 33 YASRLQNEFAGNISALADAENISRKIITRCINTAK 67 (189)
T ss_dssp HHHHHHTTTTTCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHhcCcccCHHHHHHHHCCCHHHHHHHHHHhc
Confidence 55555678999999999999999999999887543
No 288
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=36.91 E-value=41 Score=26.54 Aligned_cols=29 Identities=17% Similarity=0.102 Sum_probs=25.7
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
|..+++++||+.++++.+|+.+.++.+..
T Consensus 28 ~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 56 (95)
T 2qvo_A 28 GNDVYIQYIASKVNSPHSYVWLIIKKFEE 56 (95)
T ss_dssp TCCEEHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34599999999999999999999998875
No 289
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=36.91 E-value=20 Score=30.62 Aligned_cols=37 Identities=11% Similarity=0.224 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhcCC-CCCHhhHHhhhccCHHHHHHHHH
Q 010689 219 LCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (504)
Q Consensus 219 IAAAalylAa~~~g~-~~t~keIa~v~~Vse~TIrkr~k 256 (504)
|..||+=+.+. .|+ ..|+++||+.+||+..||=..+.
T Consensus 17 Il~aa~~l~~~-~G~~~~tv~~Ia~~agvs~~t~Y~~F~ 54 (177)
T 3kkc_A 17 IYNAFISLLQE-NDYSKITVQDVIGLANVGRSTFYSHYE 54 (177)
T ss_dssp HHHHHHHHTTT-SCTTTCCHHHHHHHHCCCHHHHTTTCS
T ss_pred HHHHHHHHHHh-CChhHhhHHHHHHHhCCcHhhHHHHcC
Confidence 44444433332 576 69999999999999999865443
No 290
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=36.87 E-value=68 Score=29.09 Aligned_cols=32 Identities=13% Similarity=0.043 Sum_probs=27.7
Q ss_pred CCCcHHHHHHHhCcChHHHHHHHHHHHHHhcc
Q 010689 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 163 (504)
Q Consensus 132 ~p~tL~dIs~~~~vs~~~Lg~~~~~L~~~L~i 163 (504)
.|.+..+||+.+|++...+.++.++|.+.=-|
T Consensus 185 ~~~t~~~lA~~lG~sr~tvsR~l~~l~~~glI 216 (232)
T 1zyb_A 185 FKVKMDDLARCLDDTRLNISKTLNELQDNGLI 216 (232)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSC
T ss_pred ecCCHHHHHHHhCCChhHHHHHHHHHHHCCCE
Confidence 57899999999999999999999999775333
No 291
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=36.79 E-value=39 Score=24.84 Aligned_cols=33 Identities=6% Similarity=0.103 Sum_probs=28.7
Q ss_pred CCCcHHHHHHHhCcChHHHHHHHHHHHHHhccc
Q 010689 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (504)
Q Consensus 132 ~p~tL~dIs~~~~vs~~~Lg~~~~~L~~~L~i~ 164 (504)
...++.|||..+|++...+.....+..+.|...
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~ 56 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHP 56 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999888888888643
No 292
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=36.75 E-value=63 Score=24.62 Aligned_cols=43 Identities=2% Similarity=0.075 Sum_probs=31.4
Q ss_pred hcCCCCCHhhHHhhhccCHHHHHHHHHHhhccCCCCCChHHHHHHHh
Q 010689 230 THGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (504)
Q Consensus 230 ~~g~~~t~keIa~v~~Vse~TIrkr~kE~~~t~~~~lt~~~~~~~~~ 276 (504)
+.....||.++|+.+||+..||.+-.+.- ....+++.+.++..
T Consensus 27 r~~~glsq~elA~~~gis~~~is~~e~g~----~~~~~~~~l~~la~ 69 (83)
T 2a6c_A 27 LRNSGLTQFKAAELLGVTQPRVSDLMRGK----IDLFSLESLIDMIT 69 (83)
T ss_dssp HHTTTCCHHHHHHHHTSCHHHHHHHHTTC----GGGCCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcCC----CCCCCHHHHHHHHH
Confidence 34567899999999999999998765421 11356777777755
No 293
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=36.64 E-value=19 Score=35.06 Aligned_cols=22 Identities=14% Similarity=0.190 Sum_probs=20.8
Q ss_pred CCHhhHHhhhccCHHHHHHHHH
Q 010689 235 FSKSDIVKIVHICEATLMKRLI 256 (504)
Q Consensus 235 ~t~keIa~v~~Vse~TIrkr~k 256 (504)
.|.+|||+.+|||.+|+++.|+
T Consensus 1 ~ti~diA~~agVS~~TVSrvLn 22 (340)
T 1qpz_A 1 ATIKDVAKRANVSTTTVSHVIN 22 (340)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHc
Confidence 4789999999999999999998
No 294
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=36.28 E-value=20 Score=28.15 Aligned_cols=29 Identities=24% Similarity=0.679 Sum_probs=19.8
Q ss_pred CCCCCC--CCCCCcccccCCCceecC-----cCceee
Q 010689 1 MVWCSS--CARHVTGHRPYDSQLCCD-----RCGKVL 30 (504)
Q Consensus 1 m~~Cp~--Cgs~~iv~D~~~G~~VC~-----~CG~Vl 30 (504)
+++||. |+...+ .++....+.|. .||...
T Consensus 25 ~~~CP~p~C~~~v~-~~~~~~~v~C~~~~~~~C~~~F 60 (80)
T 2jmo_A 25 GVLCPRPGCGAGLL-PEPDQRKVTCEGGNGLGCGFAF 60 (80)
T ss_dssp SCCCCSSSCCCCCC-CCSCTTSBCTTSSSTTCCSCCE
T ss_pred cEECCCCCCCcccE-ECCCCCcCCCCCCCCCCCCCee
Confidence 468998 887633 34455678887 888754
No 295
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=36.20 E-value=40 Score=29.69 Aligned_cols=30 Identities=10% Similarity=-0.020 Sum_probs=26.9
Q ss_pred CCCcHHHHHHHhCcChHHHHHHHHHHHHHh
Q 010689 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVL 161 (504)
Q Consensus 132 ~p~tL~dIs~~~~vs~~~Lg~~~~~L~~~L 161 (504)
.|.+..+||+.+|++...+.++.++|.+.=
T Consensus 163 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g 192 (207)
T 2oz6_A 163 IKITRQEIGRIVGCSREMVGRVLKSLEEQG 192 (207)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 478999999999999999999999998753
No 296
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=36.14 E-value=21 Score=26.44 Aligned_cols=40 Identities=8% Similarity=0.003 Sum_probs=31.1
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhccCCCCCChHHHHHHHhh
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKE 277 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~t~~~~lt~~~~~~~~~~ 277 (504)
...|++++|+.+||+..||.+-.+- ....+++.+.++...
T Consensus 20 ~glsq~~lA~~~gis~~~is~~e~g-----~~~~~~~~l~~ia~~ 59 (73)
T 3omt_A 20 KGKTNLWLTETLDKNKTTVSKWCTN-----DVQPSLETLFDIAEA 59 (73)
T ss_dssp HTCCHHHHHHHTTCCHHHHHHHHTT-----SSCCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC-----CCCCCHHHHHHHHHH
Confidence 3579999999999999999986642 235778888877653
No 297
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=36.03 E-value=38 Score=26.93 Aligned_cols=32 Identities=9% Similarity=0.153 Sum_probs=28.4
Q ss_pred CCcHHHHHHHhCcChHHHHHHHHHHHHHhccc
Q 010689 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (504)
Q Consensus 133 p~tL~dIs~~~~vs~~~Lg~~~~~L~~~L~i~ 164 (504)
..+.++||..++++..++......+.+.|++.
T Consensus 44 G~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv~ 75 (90)
T 3ulq_B 44 GFTNQEIADALHLSKRSIEYSLTSIFNKLNVG 75 (90)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 46889999999999999999999999988864
No 298
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=36.01 E-value=24 Score=25.14 Aligned_cols=39 Identities=10% Similarity=0.080 Sum_probs=29.3
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhccCCCCCChHHHHHHHh
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~t~~~~lt~~~~~~~~~ 276 (504)
...|++++|+.+||+..||.+-.+. ....+++.+.++..
T Consensus 13 ~g~s~~~lA~~~gis~~~i~~~e~g-----~~~~~~~~l~~i~~ 51 (66)
T 2xi8_A 13 KKISQSELAALLEVSRQTINGIEKN-----KYNPSLQLALKIAY 51 (66)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT-----SCCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC-----CCCCCHHHHHHHHH
Confidence 4689999999999999999886542 23456777766654
No 299
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=35.92 E-value=15 Score=35.76 Aligned_cols=44 Identities=23% Similarity=0.227 Sum_probs=29.5
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhccCCCCCChHHHHHHHhhh
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKEL 278 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~t~~~~lt~~~~~~~~~~~ 278 (504)
-+.|.+|||+.+|||.+|+++.|+.-. ..+.-|-+-.++...++
T Consensus 9 ~~~ti~diA~~agVS~~TVSr~Ln~~~--~vs~~tr~rV~~~~~~l 52 (344)
T 3kjx_A 9 RPLTLRDVSEASGVSEMTVSRVLRNRG--DVSDATRARVLAAAKEL 52 (344)
T ss_dssp -CCCHHHHHHHHCCCSHHHHHHHTTCS--CCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHcCCC--CCCHHHHHHHHHHHHHh
Confidence 357999999999999999999987421 12233444455544444
No 300
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=35.85 E-value=78 Score=27.43 Aligned_cols=30 Identities=20% Similarity=0.271 Sum_probs=26.9
Q ss_pred cCCCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 231 HGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 231 ~g~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
++-.+|+++||+.++++.+|+.+.++.+..
T Consensus 65 ~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 94 (166)
T 3deu_A 65 LPPDQSQIQLAKAIGIEQPSLVRTLDQLED 94 (166)
T ss_dssp SCSSEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 356799999999999999999999998875
No 301
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=35.78 E-value=56 Score=24.59 Aligned_cols=42 Identities=5% Similarity=0.008 Sum_probs=27.3
Q ss_pred CCCcHHHHHHHhCcChHHHHHHHHHHHHHhcccccccccccCCccchHHHHHHhhC
Q 010689 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 187 (504)
Q Consensus 132 ~p~tL~dIs~~~~vs~~~Lg~~~~~L~~~L~i~~~~~~~~~~dP~~~I~r~~~~L~ 187 (504)
...|..++|..+||+...|.+... + ... + +...+.+++..|+
T Consensus 24 ~gltq~~lA~~~gvs~~~is~~e~------g-~~~------~-~~~~~~~ia~~l~ 65 (80)
T 3kz3_A 24 LGLSYESVADKMGMGQSAVAALFN------G-INA------L-NAYNAALLAKILK 65 (80)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHHHT------T-SSC------C-CHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHc------C-CCC------C-CHHHHHHHHHHhC
Confidence 346889999999999887765321 1 111 1 2356777777776
No 302
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=35.67 E-value=21 Score=27.06 Aligned_cols=39 Identities=10% Similarity=0.067 Sum_probs=29.4
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhccCCCCCChHHHHHHHh
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~t~~~~lt~~~~~~~~~ 276 (504)
...||.++|+.+||+..||.+..+- ....+++.+.++..
T Consensus 24 ~gltq~~lA~~~gvs~~~is~~e~g-----~~~~~~~~~~~ia~ 62 (80)
T 3kz3_A 24 LGLSYESVADKMGMGQSAVAALFNG-----INALNAYNAALLAK 62 (80)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHHHTT-----SSCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHcC-----CCCCCHHHHHHHHH
Confidence 4579999999999999999976543 23456677766654
No 303
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=35.37 E-value=31 Score=28.28 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=25.6
Q ss_pred CCCCHhhHHhhh-ccCHHHHHHHHHHhhc
Q 010689 233 LKFSKSDIVKIV-HICEATLMKRLIEFEN 260 (504)
Q Consensus 233 ~~~t~keIa~v~-~Vse~TIrkr~kE~~~ 260 (504)
-+.++.+|++.+ +++.+|+.++++.+.+
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~ 62 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEK 62 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 368999999999 9999999999999875
No 304
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=35.36 E-value=54 Score=29.33 Aligned_cols=34 Identities=15% Similarity=0.045 Sum_probs=29.3
Q ss_pred CCCCcHHHHHHHhCcChHHHHHHHHHHHHHhccc
Q 010689 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (504)
Q Consensus 131 ~~p~tL~dIs~~~~vs~~~Lg~~~~~L~~~L~i~ 164 (504)
..|.+..+||+.+|++..++.++.++|.+.=-|.
T Consensus 176 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 209 (227)
T 3dkw_A 176 EIPVAKQLVAGHLSIQPETFSRIMHRLGDEGIIH 209 (227)
T ss_dssp CCCSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEE
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEE
Confidence 4678999999999999999999999998864443
No 305
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=35.36 E-value=1e+02 Score=25.19 Aligned_cols=28 Identities=11% Similarity=0.122 Sum_probs=25.5
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
-++++.+|++.++++.+|+.+.++.+..
T Consensus 47 ~~~~~~~la~~l~~~~~tvs~~l~~L~~ 74 (138)
T 1jgs_A 47 ACITPVELKKVLSVDLGALTRMLDRLVC 74 (138)
T ss_dssp SSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCChHHHHHHHHHHHH
Confidence 4689999999999999999999998875
No 306
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=35.36 E-value=23 Score=25.45 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=27.9
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhccCCCCCChHHHHHHHh
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~t~~~~lt~~~~~~~~~ 276 (504)
...|+.++|+.+||+..||.+-.+. ....+++.+.++..
T Consensus 17 ~g~s~~~lA~~~gis~~~i~~~e~g-----~~~~~~~~l~~i~~ 55 (68)
T 2r1j_L 17 LKIRQAALGKMVGVSNVAISQWERS-----ETEPNGENLLALSK 55 (68)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT-----SSCCBHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHcC-----CCCCCHHHHHHHHH
Confidence 3579999999999999999875542 22346666666544
No 307
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=35.21 E-value=34 Score=28.67 Aligned_cols=31 Identities=16% Similarity=-0.023 Sum_probs=24.9
Q ss_pred hcCCCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 230 THGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 230 ~~g~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
+..-..|..+|++.+|+|.+||.+--+.+..
T Consensus 54 lL~~G~SyreIa~~tG~StaTIsRv~r~L~~ 84 (107)
T 3frw_A 54 MLTDKRTYLDISEKTGASTATISRVNRSLNY 84 (107)
T ss_dssp HHHTTCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCccHHHHHHHHHHHHc
Confidence 3334499999999999999999987776654
No 308
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=35.00 E-value=36 Score=29.66 Aligned_cols=38 Identities=21% Similarity=0.217 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhcCCCCCHhhHHhhhccCHHHHHHHHH
Q 010689 218 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 256 (504)
Q Consensus 218 ~IAAAalylAa~~~g~~~t~keIa~v~~Vse~TIrkr~k 256 (504)
-|.-||+=+-+. +|+..|+.+||+.+|||..||-..+.
T Consensus 19 ~Il~aA~~lf~~-~G~~~s~~~IA~~agvs~~tlY~~F~ 56 (194)
T 2q24_A 19 KILAAAVRVFSE-EGLDAHLERIAREAGVGSGTLYRNFP 56 (194)
T ss_dssp HHHHHHHHHHHH-HCTTCCHHHHHHHTTCCHHHHHHHCC
T ss_pred HHHHHHHHHHHh-cCcCCCHHHHHHHhCCChHHHHHHcC
Confidence 344445444433 57779999999999999999987654
No 309
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=35.00 E-value=45 Score=29.48 Aligned_cols=40 Identities=10% Similarity=-0.125 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHHhcCCCCCHhhHHhhhccCHHHHHHHHH
Q 010689 216 PSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 256 (504)
Q Consensus 216 P~~IAAAalylAa~~~g~~~t~keIa~v~~Vse~TIrkr~k 256 (504)
-.-|..||+-+.+..= ...|+++||+.+||+..||-.++.
T Consensus 22 r~~Il~aA~~lf~~~G-~~~s~~~IA~~aGvs~~tlY~~F~ 61 (215)
T 2hku_A 22 RDALFTAATELFLEHG-EGVPITQICAAAGAHPNQVTYYYG 61 (215)
T ss_dssp HHHHHHHHHHHHHHHC-TTSCHHHHHHHHTCCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhC-CCcCHHHHHHHhCCCHHHHHHHcC
Confidence 3446666666655544 789999999999999999987765
No 310
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=34.88 E-value=46 Score=29.41 Aligned_cols=40 Identities=13% Similarity=0.081 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhcCCCCCHhhHHhhhc--------------cCHHHHHHHHHHhhc
Q 010689 220 CGAALYVSALTHGLKFSKSDIVKIVH--------------ICEATLMKRLIEFEN 260 (504)
Q Consensus 220 AAAalylAa~~~g~~~t~keIa~v~~--------------Vse~TIrkr~kE~~~ 260 (504)
-+|.++-...+.| +....+++...| ||..|||+.|..|..
T Consensus 54 ria~~lr~~i~~g-~~G~~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~ 107 (150)
T 2v7f_A 54 RVASILRRVYLDG-PVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEA 107 (150)
T ss_dssp HHHHHHHHHHHHC-SBCHHHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHCCCccCCcCCccccccchHHHHHHHHHHHH
Confidence 3444444444456 666689999999 999999999998865
No 311
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=34.74 E-value=25 Score=25.30 Aligned_cols=26 Identities=8% Similarity=0.130 Sum_probs=21.7
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHH
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIE 257 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE 257 (504)
....|+.++|..+||+..||.+-.+-
T Consensus 12 ~~glsq~~lA~~~gis~~~i~~~e~g 37 (69)
T 1r69_A 12 QLGLNQAELAQKVGTTQQSIEQLENG 37 (69)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 34679999999999999999886543
No 312
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=34.65 E-value=61 Score=23.71 Aligned_cols=32 Identities=13% Similarity=-0.060 Sum_probs=28.0
Q ss_pred CCcHHHHHHHhCcChHHHHHHHHHHHHHhccc
Q 010689 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (504)
Q Consensus 133 p~tL~dIs~~~~vs~~~Lg~~~~~L~~~L~i~ 164 (504)
..+..+||..++++...+......+.+.|+..
T Consensus 26 g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 57 (74)
T 1fse_A 26 DKTTKEIASELFISEKTVRNHISNAMQKLGVK 57 (74)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Confidence 34899999999999999999999988888753
No 313
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=34.28 E-value=36 Score=28.23 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=25.9
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
..+|+++||+.++++.+|+.+.++.+..
T Consensus 46 ~~~t~~ela~~l~~~~~tvs~~l~~Le~ 73 (139)
T 3eco_A 46 DGLTQNDIAKALQRTGPTVSNLLRNLER 73 (139)
T ss_dssp TCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHHHH
Confidence 5899999999999999999999998875
No 314
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=34.24 E-value=31 Score=27.48 Aligned_cols=29 Identities=21% Similarity=0.200 Sum_probs=22.5
Q ss_pred HhcCCCCCHhhHHhhhccCHHHHHHHHHHhh
Q 010689 229 LTHGLKFSKSDIVKIVHICEATLMKRLIEFE 259 (504)
Q Consensus 229 ~~~g~~~t~keIa~v~~Vse~TIrkr~kE~~ 259 (504)
..++.+ +.+.|+.+||+..|+.++++.+.
T Consensus 61 ~~~~gn--~~~aA~~LGIsr~tL~rklkk~~ 89 (91)
T 1ntc_A 61 RHTQGH--KQEAARLLGWGAATLTAKLKELG 89 (91)
T ss_dssp HHTTTC--TTHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhCCC--HHHHHHHHCcCHHHHHHHHHHhC
Confidence 344444 44789999999999999998763
No 315
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=34.24 E-value=51 Score=29.82 Aligned_cols=30 Identities=13% Similarity=0.203 Sum_probs=27.0
Q ss_pred CCCCcHHHHHHHhCcChHHHHHHHHHHHHH
Q 010689 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (504)
Q Consensus 131 ~~p~tL~dIs~~~~vs~~~Lg~~~~~L~~~ 160 (504)
..|.|..+||+.+|++...+.++.++|.+.
T Consensus 176 ~l~~t~~~iA~~lg~sr~tvsR~l~~L~~~ 205 (237)
T 3fx3_A 176 TLPYDKMLIAGRLGMKPESLSRAFSRLKAA 205 (237)
T ss_dssp ECCSCTHHHHHHTTCCHHHHHHHHHHHGGG
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 478889999999999999999999988765
No 316
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=34.10 E-value=1.3e+02 Score=24.90 Aligned_cols=27 Identities=7% Similarity=-0.039 Sum_probs=25.1
Q ss_pred CCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 234 KFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 234 ~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
.+|+++||..++++.+|+.+.++.+..
T Consensus 45 ~~t~~eLa~~l~~~~~tvs~~l~~Le~ 71 (145)
T 3g3z_A 45 SRTQKHIGEKWSLPKQTVSGVCKTLAG 71 (145)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 599999999999999999999998875
No 317
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=34.05 E-value=46 Score=29.38 Aligned_cols=30 Identities=7% Similarity=-0.004 Sum_probs=27.0
Q ss_pred CCCcHHHHHHHhCcChHHHHHHHHHHHHHh
Q 010689 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVL 161 (504)
Q Consensus 132 ~p~tL~dIs~~~~vs~~~Lg~~~~~L~~~L 161 (504)
.|.+..+||+.+|++..++.++.++|.+.=
T Consensus 166 ~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g 195 (210)
T 3ryp_A 166 IKITRQEIGQIVGCSRETVGRILKMLEDQN 195 (210)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred eccCHHHHHHHhCCcHHHHHHHHHHHHHCC
Confidence 478999999999999999999999998753
No 318
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=34.02 E-value=18 Score=27.28 Aligned_cols=25 Identities=8% Similarity=0.021 Sum_probs=21.3
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHH
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLI 256 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~k 256 (504)
....||+++|+.+||+..||++--+
T Consensus 22 ~~gltq~elA~~~gvs~~tis~~E~ 46 (73)
T 3fmy_A 22 KLSLTQKEASEIFGGGVNAFSRYEK 46 (73)
T ss_dssp HTTCCHHHHHHHHCSCTTHHHHHHT
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 3578999999999999999987543
No 319
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=33.98 E-value=41 Score=28.61 Aligned_cols=27 Identities=7% Similarity=0.148 Sum_probs=25.4
Q ss_pred CCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 234 KFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 234 ~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
.+++.+|++.++++.+|+.+.++.+.+
T Consensus 58 ~~t~~ela~~l~is~~tvs~~l~~Le~ 84 (154)
T 2eth_A 58 PKKMKEIAEFLSTTKSNVTNVVDSLEK 84 (154)
T ss_dssp CBCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 799999999999999999999999875
No 320
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=33.91 E-value=1.5e+02 Score=24.25 Aligned_cols=74 Identities=8% Similarity=0.052 Sum_probs=39.7
Q ss_pred CCcHHHHHHHhCcChHHHHHH-----------HHHHHHHhcccccccccc--cCCccchHHHHHHhhCCCCCHHHHHHHH
Q 010689 133 PFLLIDFSNYLNINVYELGAV-----------YLQLCQVLYIADESNVLK--QVDPSIFLHKFTDRLLPGGNKKVCDTAR 199 (504)
Q Consensus 133 p~tL~dIs~~~~vs~~~Lg~~-----------~~~L~~~L~i~~~~~~~~--~~dP~~~I~r~~~~L~~~l~~~V~~~A~ 199 (504)
..|..++|..+|++...|.+. +.+|++.|++.....+.. ..........+...+. .++++-.....
T Consensus 25 glsq~~lA~~~gis~~~is~~E~g~~~p~~~~l~~ia~~l~v~~~~l~~~~~~~~~~~~~~~l~~~~~-~l~~~~~~~i~ 103 (126)
T 3ivp_A 25 GLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLLNVSVDEFFLPASSQVKSTKRRQLENKID-NFTDADLVIME 103 (126)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHSCCCCCHHHHHHHHHHHTCCSHHHHSCCCCCCCCHHHHHHHHHTT-TCCHHHHHHHH
T ss_pred CCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHHHHhCCCccccchHHHHHHHHHHH-cCCHHHHHHHH
Confidence 346677777777766666654 445666666543211111 1112234455555552 36777777777
Q ss_pred HHHHHhcc
Q 010689 200 DILASMKR 207 (504)
Q Consensus 200 ~I~~~~~~ 207 (504)
.+++.+..
T Consensus 104 ~~i~~l~~ 111 (126)
T 3ivp_A 104 SVADGIVK 111 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766643
No 321
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=33.84 E-value=43 Score=27.82 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=26.9
Q ss_pred cCCCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 231 HGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 231 ~g~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
.+-++|+++|++.++++.+|+.+.++.+..
T Consensus 49 ~~~~~t~~~la~~l~~s~~~vs~~l~~L~~ 78 (146)
T 2fbh_A 49 HRDSPTQRELAQSVGVEGPTLARLLDGLES 78 (146)
T ss_dssp CSSCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHhCCChhhHHHHHHHHHH
Confidence 456799999999999999999999998875
No 322
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=33.74 E-value=34 Score=29.13 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=25.8
Q ss_pred CCCCCHhhHHhhh-ccCHHHHHHHHHHhhc
Q 010689 232 GLKFSKSDIVKIV-HICEATLMKRLIEFEN 260 (504)
Q Consensus 232 g~~~t~keIa~v~-~Vse~TIrkr~kE~~~ 260 (504)
.-+.++.+|++.+ |++..|+.++++.+.+
T Consensus 46 ~g~~~~~eLa~~l~gis~~tls~~L~~Le~ 75 (131)
T 1yyv_A 46 DGTHRFSDLRRXMGGVSEXMLAQSLQALEQ 75 (131)
T ss_dssp GCCEEHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 3478999999999 7999999999999875
No 323
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=33.72 E-value=55 Score=28.35 Aligned_cols=27 Identities=0% Similarity=0.046 Sum_probs=25.3
Q ss_pred CCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 234 KFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 234 ~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
.+|+++||+.++++.+|+.+.++.+.+
T Consensus 59 ~~t~~eLa~~l~is~~tvs~~l~~Le~ 85 (168)
T 2nyx_A 59 PINLATLATLLGVQPSATGRMVDRLVG 85 (168)
T ss_dssp SEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 799999999999999999999998875
No 324
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=33.69 E-value=27 Score=25.33 Aligned_cols=26 Identities=8% Similarity=0.160 Sum_probs=21.8
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHH
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIE 257 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE 257 (504)
....|+.++|+.+||+..||.+-.+-
T Consensus 14 ~~glsq~~lA~~~gis~~~i~~~e~g 39 (71)
T 1zug_A 14 ALKMTQTELATKAGVKQQSIQLIEAG 39 (71)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 34679999999999999999886653
No 325
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=33.60 E-value=70 Score=25.12 Aligned_cols=45 Identities=20% Similarity=0.161 Sum_probs=0.0
Q ss_pred CCCHhhHHhhhccCHHHHHHHHHHhhccCCCCCChHHHHHHHhhhh
Q 010689 234 KFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELH 279 (504)
Q Consensus 234 ~~t~keIa~v~~Vse~TIrkr~kE~~~t~~~~lt~~~~~~~~~~~~ 279 (504)
..||.++|..+||+..|+..++..+..-. ...+++.+.++...+.
T Consensus 14 glsq~~lA~~~gis~~~~~~~is~~E~g~-~~p~~~~l~~la~~l~ 58 (98)
T 3lfp_A 14 GISQEKLGVLAGIDEASASARMNQYEKGK-HAPDFEMANRLAKVLK 58 (98)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHHHHTS-SCCCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHhCCCcchhhhHHHHHHCCC-CCCCHHHHHHHHHHHC
No 326
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=33.59 E-value=41 Score=28.01 Aligned_cols=29 Identities=3% Similarity=0.044 Sum_probs=26.6
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
+-++++.+||+.++++.+|+.+.++.+..
T Consensus 48 ~~~~~~~ela~~l~~s~~tvs~~l~~Le~ 76 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVTQSAITASVDKLEE 76 (146)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHhCCCchhHHHHHHHHHH
Confidence 56799999999999999999999999875
No 327
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=33.41 E-value=2.6e+02 Score=24.87 Aligned_cols=27 Identities=7% Similarity=0.076 Sum_probs=23.2
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHh
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEF 258 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~ 258 (504)
....|.+|||...|+|+.||++++..-
T Consensus 201 ~~g~s~~EIA~~lgis~~~V~~~~~ra 227 (239)
T 1rp3_A 201 YEELPAKEVAKILETSVSRVSQLKAKA 227 (239)
T ss_dssp TSCCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 456899999999999999999887543
No 328
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=33.38 E-value=1.2e+02 Score=24.77 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=32.7
Q ss_pred HHHHHHHhcCCCCcHHHHHHHhCcChHHHHHHHHHHHHHhcc
Q 010689 122 CLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 163 (504)
Q Consensus 122 CLYiACR~~~~p~tL~dIs~~~~vs~~~Lg~~~~~L~~~L~i 163 (504)
+|++..+..+.|.+..+|+..++++...+.+...+|.+.=-+
T Consensus 39 iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli 80 (141)
T 3bro_A 39 IIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLL 80 (141)
T ss_dssp HHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCE
Confidence 344444545558999999999999999999999988875433
No 329
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=33.34 E-value=48 Score=29.31 Aligned_cols=33 Identities=12% Similarity=-0.039 Sum_probs=28.2
Q ss_pred CCCcHHHHHHHhCcChHHHHHHHHHHHHHhccc
Q 010689 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (504)
Q Consensus 132 ~p~tL~dIs~~~~vs~~~Lg~~~~~L~~~L~i~ 164 (504)
.|.+..+||+.+|++...+.+..++|.+.=-|.
T Consensus 145 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~ 177 (202)
T 2zcw_A 145 LKATHDELAAAVGSVRETVTKVIGELAREGYIR 177 (202)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 578999999999999999999999998754343
No 330
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=33.32 E-value=37 Score=28.54 Aligned_cols=28 Identities=7% Similarity=0.068 Sum_probs=25.8
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
-++++.+||+.++++.+|+.+.++.+..
T Consensus 53 ~~~t~~ela~~l~~~~~~vs~~l~~Le~ 80 (152)
T 3bj6_A 53 PGATAPQLGAALQMKRQYISRILQEVQR 80 (152)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3799999999999999999999998875
No 331
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=33.12 E-value=46 Score=26.17 Aligned_cols=33 Identities=21% Similarity=0.140 Sum_probs=27.8
Q ss_pred CCCCcHHHHHHHhCcChHHHHHHHHHHHHHhcc
Q 010689 131 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 163 (504)
Q Consensus 131 ~~p~tL~dIs~~~~vs~~~Lg~~~~~L~~~L~i 163 (504)
|.+.+..+||..++++...|.+...+|.+.=-+
T Consensus 25 g~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I 57 (81)
T 1qbj_A 25 GKATTAHDLSGKLGTPKKEINRVLYSLAKKGKL 57 (81)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSE
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 358999999999999999999998888774433
No 332
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=33.07 E-value=27 Score=25.81 Aligned_cols=40 Identities=3% Similarity=0.037 Sum_probs=29.3
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhccCCCCCChHHHHHHHh
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~t~~~~lt~~~~~~~~~ 276 (504)
....|+.++|+.+||+..||.+-.+ .....+++.+.++..
T Consensus 21 ~~glsq~~lA~~~gis~~~i~~~e~-----g~~~~~~~~l~~la~ 60 (77)
T 2b5a_A 21 QKGVSQEELADLAGLHRTYISEVER-----GDRNISLINIHKICA 60 (77)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT-----TCSCCBHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHC-----CCCCCCHHHHHHHHH
Confidence 3568999999999999999987553 223456677666644
No 333
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=33.02 E-value=36 Score=29.96 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=23.2
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhh
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFE 259 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~ 259 (504)
...|.+|||...|+|+.||++++..-.
T Consensus 155 ~g~s~~EIA~~lgis~~tV~~~l~ra~ 181 (194)
T 1or7_A 155 DGLSYEEIAAIMDCPVGTVRSRIFRAR 181 (194)
T ss_dssp TCCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 458999999999999999998876543
No 334
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=32.96 E-value=44 Score=28.95 Aligned_cols=38 Identities=5% Similarity=0.004 Sum_probs=30.2
Q ss_pred HHHHHHHhcCCCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 223 ALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 223 alylAa~~~g~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
.+|||. ..+-++|.++||...+|+..++++-+..+...
T Consensus 20 L~~La~-~~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~ 57 (149)
T 1ylf_A 20 LSILKN-NPSSLCTSDYMAESVNTNPVVIRKIMSYLKQA 57 (149)
T ss_dssp HHHHHH-SCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHh-CCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 344554 23557899999999999999999999988754
No 335
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=32.85 E-value=25 Score=26.34 Aligned_cols=39 Identities=10% Similarity=0.158 Sum_probs=27.1
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhccCCCCCChHHHHHHHh
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~t~~~~lt~~~~~~~~~ 276 (504)
..+|++++|+.+||+..||.+-.+ .....+++.+.++..
T Consensus 14 ~glsq~~lA~~~gis~~~i~~~e~-----g~~~p~~~~l~~ia~ 52 (77)
T 2k9q_A 14 LSLTAKSVAEEMGISRQQLCNIEQ-----SETAPVVVKYIAFLR 52 (77)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHT-----CCSCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHc-----CCCCCCHHHHHHHHH
Confidence 457999999999999999987543 122345555555543
No 336
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=32.80 E-value=1.6e+02 Score=23.91 Aligned_cols=32 Identities=13% Similarity=0.080 Sum_probs=27.9
Q ss_pred CCcHHHHHHHhCcChHHHHHHHHHHHHHhccc
Q 010689 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (504)
Q Consensus 133 p~tL~dIs~~~~vs~~~Lg~~~~~L~~~L~i~ 164 (504)
|.+..+|++.++++...+.+....|.+.=-+.
T Consensus 52 ~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~ 83 (140)
T 2nnn_A 52 PCPQNQLGRLTAMDAATIKGVVERLDKRGLIQ 83 (140)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 89999999999999999999999888764443
No 337
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=32.80 E-value=25 Score=31.38 Aligned_cols=29 Identities=7% Similarity=0.226 Sum_probs=26.5
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
.+.|+++||..+|++..|+.+-+++|.+-
T Consensus 162 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 190 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVSRVLHALAEE 190 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 56899999999999999999999999854
No 338
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=32.79 E-value=36 Score=33.65 Aligned_cols=31 Identities=13% Similarity=0.180 Sum_probs=27.4
Q ss_pred cCCCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 231 HGLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 231 ~g~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
.+-.+|.+++|+.++||+.||++.++.+.+.
T Consensus 16 ~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~ 46 (321)
T 1bia_A 16 NGEFHSGEQLGETLGMSRAAINKHIQTLRDW 46 (321)
T ss_dssp TSSCBCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 3557899999999999999999999998753
No 339
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=32.78 E-value=68 Score=25.94 Aligned_cols=40 Identities=13% Similarity=0.296 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHhCcChHHHHHHHHHH
Q 010689 117 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQL 157 (504)
Q Consensus 117 ~vaAACLYiACR~~~~p~tL~dIs~~~~vs~~~Lg~~~~~L 157 (504)
.+..++-||-- ....|+++.++|..++++...|.+.|++.
T Consensus 8 ~i~~~~~~i~~-~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 8 KLTEAVSLMEA-NIEEPLSTDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp HHHHHHHHHHT-CSSSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-hhcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34445555532 33557999999999999999998776643
No 340
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=32.76 E-value=42 Score=27.15 Aligned_cols=29 Identities=14% Similarity=0.148 Sum_probs=25.7
Q ss_pred CCCCCHhhHHhhh-ccCHHHHHHHHHHhhc
Q 010689 232 GLKFSKSDIVKIV-HICEATLMKRLIEFEN 260 (504)
Q Consensus 232 g~~~t~keIa~v~-~Vse~TIrkr~kE~~~ 260 (504)
.-+.++.+|++.+ |++.+|+.++++.+.+
T Consensus 36 ~~~~~~~eL~~~l~gis~~~ls~~L~~Le~ 65 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGISEKMLIDELKFLCG 65 (107)
T ss_dssp TSCEEHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred hCCcCHHHHHHHcccCCHHHHHHHHHHHHH
Confidence 4468999999999 5999999999999875
No 341
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=32.67 E-value=1.1e+02 Score=25.51 Aligned_cols=28 Identities=7% Similarity=0.063 Sum_probs=25.7
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
-.+++++|++.++++.+|+.+.++.+..
T Consensus 55 ~~~t~~ela~~l~~~~~tvs~~l~~Le~ 82 (150)
T 2rdp_A 55 GDLTVGELSNKMYLACSTTTDLVDRMER 82 (150)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCchhHHHHHHHHHH
Confidence 3799999999999999999999998875
No 342
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=32.66 E-value=30 Score=25.65 Aligned_cols=41 Identities=10% Similarity=0.043 Sum_probs=30.2
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhccCCCCCChHHHHHHHh
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~t~~~~lt~~~~~~~~~ 276 (504)
....|+.++|+.+||+..||.+-.+- .....+++.+.++..
T Consensus 18 ~~g~sq~~lA~~~gis~~~i~~~e~g----~~~~~~~~~l~~ia~ 58 (78)
T 3b7h_A 18 QQNLTINRVATLAGLNQSTVNAMFEG----RSKRPTITTIRKVCG 58 (78)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHCT----TCCCCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC----CCCCCCHHHHHHHHH
Confidence 35689999999999999999876532 112567777777654
No 343
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=32.62 E-value=35 Score=28.24 Aligned_cols=28 Identities=14% Similarity=0.198 Sum_probs=25.8
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
-++++++||+.++++.+|+.+.++.+.+
T Consensus 44 ~~~~~~ela~~l~is~~~vs~~l~~L~~ 71 (142)
T 3bdd_A 44 APLHQLALQERLQIDRAAVTRHLKLLEE 71 (142)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3699999999999999999999999875
No 344
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=32.60 E-value=47 Score=27.31 Aligned_cols=39 Identities=10% Similarity=0.075 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHhCcChHHHHHHHHH
Q 010689 117 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 156 (504)
Q Consensus 117 ~vaAACLYiACR~~~~p~tL~dIs~~~~vs~~~Lg~~~~~ 156 (504)
.+..++-||--.. ..++++.+||..++++...|.+.|++
T Consensus 8 ~~~~~~~~i~~~~-~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 8 MRTRVCTVINNNI-AHEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp HHHHHHHHHHTST-TSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3445555554433 34899999999999999998877653
No 345
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=32.55 E-value=51 Score=23.78 Aligned_cols=21 Identities=5% Similarity=0.197 Sum_probs=19.8
Q ss_pred CHhhHHhhhccCHHHHHHHHH
Q 010689 236 SKSDIVKIVHICEATLMKRLI 256 (504)
Q Consensus 236 t~keIa~v~~Vse~TIrkr~k 256 (504)
++.++|+.+||+.+||.+.++
T Consensus 15 s~~~~A~~lgis~~~vs~~~~ 35 (67)
T 2pij_A 15 TQSALAAALGVNQSAISQMVR 35 (67)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHc
Confidence 999999999999999999884
No 346
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=32.42 E-value=62 Score=26.94 Aligned_cols=27 Identities=15% Similarity=0.159 Sum_probs=25.3
Q ss_pred CCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 234 KFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 234 ~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
.+++++||+.++++.+||.+.++.+..
T Consensus 54 ~~~~~~la~~l~~~~~tvs~~l~~L~~ 80 (147)
T 1z91_A 54 TLTVKKMGEQLYLDSGTLTPMLKRMEQ 80 (147)
T ss_dssp EEEHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCcCcHHHHHHHHHH
Confidence 789999999999999999999998875
No 347
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=32.34 E-value=36 Score=31.61 Aligned_cols=28 Identities=11% Similarity=0.078 Sum_probs=24.9
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
...|.+|||...++|+.||+.+++.+..
T Consensus 187 ~g~s~~eIa~~l~is~~tV~~~~~~~~~ 214 (234)
T 1l3l_A 187 VGKTMEEIADVEGVKYNSVRVKLREAMK 214 (234)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5679999999999999999999887754
No 348
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=32.12 E-value=68 Score=26.67 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=22.7
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
-++|+++||+.++++.+|+.+.++.+..
T Consensus 50 ~~~t~~eLa~~l~~~~~tvs~~l~~L~~ 77 (142)
T 3ech_A 50 RGLNLQDLGRQMCRDKALITRKIRELEG 77 (142)
T ss_dssp TTCCHHHHHHHHC---CHHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3799999999999999999999998875
No 349
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=32.06 E-value=55 Score=25.47 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=28.1
Q ss_pred CCCcHHHHHHHhCcChHHHHHHHHHHHHHhcc
Q 010689 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 163 (504)
Q Consensus 132 ~p~tL~dIs~~~~vs~~~Lg~~~~~L~~~L~i 163 (504)
.+.|+.+||..+|+++..+.....+..+.|..
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999888888777764
No 350
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=32.03 E-value=9.7 Score=33.38 Aligned_cols=14 Identities=14% Similarity=0.418 Sum_probs=7.2
Q ss_pred CCCceecCcCceee
Q 010689 17 YDSQLCCDRCGKVL 30 (504)
Q Consensus 17 ~~G~~VC~~CG~Vl 30 (504)
..+...|.+||.+.
T Consensus 67 ~p~~~~C~~CG~~~ 80 (139)
T 3a43_A 67 EEAVFKCRNCNYEW 80 (139)
T ss_dssp ECCEEEETTTCCEE
T ss_pred cCCcEECCCCCCEE
Confidence 34555555555554
No 351
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=31.99 E-value=42 Score=28.60 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHhhhccCHHHHHHHHH
Q 010689 219 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 256 (504)
Q Consensus 219 IAAAalylAa~~~g~~-~t~keIa~v~~Vse~TIrkr~k 256 (504)
|..||+-+-+. .|+. .|+++||+.+|||..|+-+.+.
T Consensus 13 Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 50 (188)
T 3qkx_A 13 IFSATDRLMAR-EGLNQLSMLKLAKEANVAAGTIYLYFK 50 (188)
T ss_dssp HHHHHHHHHHH-SCSTTCCHHHHHHHHTCCHHHHHHHSS
T ss_pred HHHHHHHHHHh-cCcccCCHHHHHHHhCCCcchHHHHcC
Confidence 45555544443 6775 9999999999999999987664
No 352
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=31.95 E-value=57 Score=23.90 Aligned_cols=24 Identities=8% Similarity=0.148 Sum_probs=21.0
Q ss_pred CHhhHHhhhccCHHHHHHHHHHhh
Q 010689 236 SKSDIVKIVHICEATLMKRLIEFE 259 (504)
Q Consensus 236 t~keIa~v~~Vse~TIrkr~kE~~ 259 (504)
++...|..+||+..|+.++++.+.
T Consensus 34 n~~~aA~~LGisr~tL~rklkk~g 57 (63)
T 3e7l_A 34 DLKRTAEEIGIDLSNLYRKIKSLN 57 (63)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTT
T ss_pred CHHHHHHHHCcCHHHHHHHHHHhC
Confidence 356789999999999999999875
No 353
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=31.86 E-value=52 Score=30.09 Aligned_cols=30 Identities=3% Similarity=0.035 Sum_probs=26.5
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
+-.++..|+|..++||+.|||+=+.|+...
T Consensus 24 ~~~~~~~~la~~~~vs~~TiRrDl~eL~~~ 53 (190)
T 4a0z_A 24 NPFITDHELSDLFQVSIQTIRLDRTYLNIP 53 (190)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHTCC
T ss_pred CCCEeHHHHHHHHCCCHHHHHHHHHHhcCc
Confidence 456899999999999999999999998753
No 354
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=31.86 E-value=55 Score=24.39 Aligned_cols=31 Identities=10% Similarity=0.153 Sum_probs=26.4
Q ss_pred CCCcHHHHHHHhCcChHHHHHHHHHHHHHhc
Q 010689 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLY 162 (504)
Q Consensus 132 ~p~tL~dIs~~~~vs~~~Lg~~~~~L~~~L~ 162 (504)
.+.+..|||..+|++...+........+.|.
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 5789999999999999999887777766665
No 355
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=31.79 E-value=40 Score=26.40 Aligned_cols=42 Identities=10% Similarity=-0.005 Sum_probs=30.2
Q ss_pred hcCCCCCHhhHHhhhccCHHHHHHHHHHhhccCCCCCChHHHHHHHh
Q 010689 230 THGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (504)
Q Consensus 230 ~~g~~~t~keIa~v~~Vse~TIrkr~kE~~~t~~~~lt~~~~~~~~~ 276 (504)
.....+|++++|+.+||+..||.+-.+. ....+++.+.++..
T Consensus 18 r~~~glsq~~lA~~~gis~~~is~~e~G-----~~~p~~~~l~~ia~ 59 (94)
T 2kpj_A 18 IAKSEKTQLEIAKSIGVSPQTFNTWCKG-----IAIPRMGKVQALAD 59 (94)
T ss_dssp HTTSSSCHHHHHHHHTCCHHHHHHHHTT-----SCCCCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHhC-----CCCCCHHHHHHHHH
Confidence 3456789999999999999999875542 23446666666544
No 356
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=31.63 E-value=50 Score=28.29 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCC-CCCHhhHHhhhccCHHHHHHHHHH
Q 010689 219 LCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 257 (504)
Q Consensus 219 IAAAalylAa~~~g~-~~t~keIa~v~~Vse~TIrkr~kE 257 (504)
|..||+-+.+. .|+ ..|+++||+.+|||..||-+.+..
T Consensus 7 Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 45 (194)
T 3bqz_B 7 ILGVAKELFIK-NGYNATTTGEIVKLSESSKGNLYYHFKT 45 (194)
T ss_dssp HHHHHHHHHHH-HTTTTCCHHHHHHHTTCCHHHHHHHTSS
T ss_pred HHHHHHHHHHH-cCCccCCHHHHHHHhCCCchhHHHhCCC
Confidence 44444444433 576 599999999999999999877653
No 357
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=31.59 E-value=45 Score=26.24 Aligned_cols=29 Identities=10% Similarity=-0.009 Sum_probs=25.7
Q ss_pred CCCCCHhhH----HhhhccCHHHHHHHHHHhhc
Q 010689 232 GLKFSKSDI----VKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 232 g~~~t~keI----a~v~~Vse~TIrkr~kE~~~ 260 (504)
+-..++.+| |+..+++.+|+.+.++.+.+
T Consensus 20 ~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~ 52 (99)
T 1tbx_A 20 NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQ 52 (99)
T ss_dssp CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 456899999 89999999999999998875
No 358
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=31.52 E-value=46 Score=28.37 Aligned_cols=30 Identities=7% Similarity=0.012 Sum_probs=26.8
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
+-.+++++|++.++++.+||.+.++.+..-
T Consensus 61 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~ 90 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMDKVAVSRAVARLLER 90 (162)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 457999999999999999999999998763
No 359
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=31.48 E-value=68 Score=24.72 Aligned_cols=34 Identities=21% Similarity=0.148 Sum_probs=28.2
Q ss_pred cCCCCcHHHHHHHhCcChHHHHHHHHHHHHHhcc
Q 010689 130 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 163 (504)
Q Consensus 130 ~~~p~tL~dIs~~~~vs~~~Lg~~~~~L~~~L~i 163 (504)
++-+.|..+||..++++..+|.+...+|.+.=-+
T Consensus 28 ~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I 61 (77)
T 1qgp_A 28 EGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKL 61 (77)
T ss_dssp SSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSE
T ss_pred CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 3458999999999999999999988888765433
No 360
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=31.47 E-value=1.3e+02 Score=24.23 Aligned_cols=47 Identities=13% Similarity=0.131 Sum_probs=33.8
Q ss_pred cCCChhHHHH---HHHHHHHHhcCCCCCHhhHHhhh-ccCHHHHHHHHHHhhc
Q 010689 212 TGRKPSGLCG---AALYVSALTHGLKFSKSDIVKIV-HICEATLMKRLIEFEN 260 (504)
Q Consensus 212 ~GR~P~~IAA---AalylAa~~~g~~~t~keIa~v~-~Vse~TIrkr~kE~~~ 260 (504)
.+++...|+- -|.|++-.+. ..|+.+|+..+ |...+||...++.+.+
T Consensus 23 s~~R~~~i~~aRqiamyL~r~~t--~~Sl~~IG~~fggrdHsTV~ha~~ki~~ 73 (94)
T 1j1v_A 23 SKRRSRSVARPRQMAMALAKELT--NHSLPEIGDAFGGRDHTTVLHACRKIEQ 73 (94)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHTTSCCHHHHHHHHHHHHH
T ss_pred CCCCCchhHHHHHHHHHHHHHHH--CcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3444444443 3668876654 57888999999 8999999988887654
No 361
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=31.45 E-value=28 Score=25.62 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=28.6
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhccCCCCCChHHHHHHHh
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~t~~~~lt~~~~~~~~~ 276 (504)
...|+.++|+.+||+..||.+-.+. ....+++.+.++..
T Consensus 17 ~gls~~~lA~~~gis~~~i~~~e~g-----~~~~~~~~l~~ia~ 55 (76)
T 1adr_A 17 LKIRQAALGKMVGVSNVAISQWERS-----ETEPNGENLLALSK 55 (76)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT-----SSCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC-----CCCCCHHHHHHHHH
Confidence 3579999999999999999876542 23456676666644
No 362
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=31.42 E-value=90 Score=27.97 Aligned_cols=49 Identities=10% Similarity=-0.014 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHh--------cCCCCcHHHHHHHhCcChHHHHHHHHHHHHHhccc
Q 010689 116 EQVQASCLYLACRQ--------KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (504)
Q Consensus 116 ~~vaAACLYiACR~--------~~~p~tL~dIs~~~~vs~~~Lg~~~~~L~~~L~i~ 164 (504)
..++...+.++-+. -..|.+..+||+.+|++...+.++.++|.+.=-|.
T Consensus 150 ~Rl~~~L~~~~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~ 206 (231)
T 3e97_A 150 AALTHVFANLYRQRLAAGVPQPEVLPLGTQDIMARTSSSRETVSRVLKRLEAHNILE 206 (231)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSTTEECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHhcCCCCCCceEecCCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 34555555555432 23578999999999999999999999998754343
No 363
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=31.41 E-value=18 Score=29.77 Aligned_cols=22 Identities=23% Similarity=0.714 Sum_probs=17.3
Q ss_pred CCCCCCCCCcccccCCCceecCcCce
Q 010689 3 WCSSCARHVTGHRPYDSQLCCDRCGK 28 (504)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VC~~CG~ 28 (504)
.|+.||....-. --..|..||+
T Consensus 18 lCrRCG~~sfH~----qK~~CgkCGY 39 (97)
T 2zkr_2 18 LCRRCGSKAYHL----QKSTCGKCGY 39 (97)
T ss_dssp CCTTTCSSCEET----TSCCBTTTCT
T ss_pred cCCCCCCccCcC----ccccCcccCC
Confidence 699999985522 3569999998
No 364
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=31.29 E-value=39 Score=28.92 Aligned_cols=29 Identities=10% Similarity=0.047 Sum_probs=26.3
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
+-++++++|++.++++.+|+.+.++.+..
T Consensus 64 ~~~~t~~ela~~l~is~~tvs~~l~~Le~ 92 (162)
T 3cjn_A 64 KDGLPIGTLGIFAVVEQSTLSRALDGLQA 92 (162)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 34799999999999999999999999875
No 365
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=31.26 E-value=31 Score=25.22 Aligned_cols=40 Identities=3% Similarity=0.002 Sum_probs=29.8
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhccCCCCCChHHHHHHHh
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~t~~~~lt~~~~~~~~~ 276 (504)
....|+.++|+.+||+..||.+-.+ .....+++.+.++..
T Consensus 24 ~~g~s~~~lA~~~gis~~~i~~~e~-----g~~~~~~~~l~~l~~ 63 (74)
T 1y7y_A 24 AKGLSQETLAFLSGLDRSYVGGVER-----GQRNVSLVNILKLAT 63 (74)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT-----TCSCCBHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHC-----CCCCCCHHHHHHHHH
Confidence 3568999999999999999987543 224567777776654
No 366
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=31.24 E-value=46 Score=29.04 Aligned_cols=39 Identities=8% Similarity=0.151 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHhcCC-CCCHhhHHhhhccCHHHHHHHHH
Q 010689 217 SGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (504)
Q Consensus 217 ~~IAAAalylAa~~~g~-~~t~keIa~v~~Vse~TIrkr~k 256 (504)
.-|..||+=+.+. .|+ ..|+.+||+.+|||..||-+.+.
T Consensus 17 ~~Il~aa~~l~~~-~G~~~~ti~~IA~~agvs~~t~Y~~F~ 56 (212)
T 3knw_A 17 QHILDSGFHLVLR-KGFVGVGLQEILKTSGVPKGSFYHYFE 56 (212)
T ss_dssp HHHHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHH-cCCccCCHHHHHHHhCCChHHHHHHCC
Confidence 3455555544443 576 69999999999999999987664
No 367
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=31.15 E-value=27 Score=27.75 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=30.9
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhccCCCCCChHHHHHHHhhh
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKEL 278 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~t~~~~lt~~~~~~~~~~~ 278 (504)
...||.++|+.+||+..||.+-.+- . ..+++.+.++...+
T Consensus 36 ~glTq~eLA~~~GiS~~tis~iE~G----~--~~s~~~l~kIa~~L 75 (88)
T 3t76_A 36 RDMKKGELREAVGVSKSTFAKLGKN----E--NVSLTVLLAICEYL 75 (88)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT----C--CCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC----C--CcCHHHHHHHHHHH
Confidence 4689999999999999999876653 1 25788887776533
No 368
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=31.12 E-value=2.7e+02 Score=27.88 Aligned_cols=151 Identities=12% Similarity=0.084 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHhCcccCCCchhHHHHHHHHHHHHhcCCC-CcHHHHHHHhCcChHHHHHHHHHHHHHhccccccccc
Q 010689 92 EIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP-FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVL 170 (504)
Q Consensus 92 ~i~e~A~~iyk~a~~~~~~rGR~~~~vaAACLYiACR~~~~p-~tL~dIs~~~~vs~~~Lg~~~~~L~~~L~i~~~~~~~ 170 (504)
.++..|...|....=+-|..|--+..-+.+-+++ .+.|.+ ..+.-|+..+.-+.. ..|..|...-. .
T Consensus 184 pl~~aa~~h~~f~~IHPF~DGNGR~~Rll~~~~L--~~~g~~~~~~~~ls~~~~~~r~---~Yy~aL~~~~~----~--- 251 (373)
T 2qc0_A 184 PLIKMAMAHYQFEAIHPFIDGNGRTGRVLNILYL--IDQQLLSAPILYLSRYIVAHKQ---DYYRLLLNVTT----Q--- 251 (373)
T ss_dssp HHHHHHHHHHHHHHHCCSSSCHHHHHHHHHHHHH--HHTTSCSSSCCCTHHHHHHTHH---HHHHHHHHHHH----H---
T ss_pred HHHHHHHHHHHHHhcCCCcCCchHHHHHHHHHHH--HHCCCCCcccccHHHHHHHhHH---HHHHHHHHhcc----c---
Confidence 6777777778888788898875544444433443 345543 222223333222222 22333333221 1
Q ss_pred ccCCccchHHHHHHhhCCCCCHHHHHHHHHHHHHhcc--cccccCCChhHHHHHHHHHHHHhcCCCCCHhhHHhhhccCH
Q 010689 171 KQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKR--DWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 248 (504)
Q Consensus 171 ~~~dP~~~I~r~~~~L~~~l~~~V~~~A~~I~~~~~~--~~l~~GR~P~~IAAAalylAa~~~g~~~t~keIa~v~~Vse 248 (504)
-|...||.-|+..+.. --........++...+.+ ..+ .++.|..-+...+-+. ..+--.+.++++...+||.
T Consensus 252 --~d~~~~i~~~l~~i~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ll~~l--~~~p~~t~~~~~~~~gvS~ 325 (373)
T 2qc0_A 252 --QEWQPWIIFILNAVEQ-TAKWTTHKIAAARELIAHTTEYV-RQQLPKIYSHELVQVI--FEQPYCRIQNLVESGLAKR 325 (373)
T ss_dssp --CCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHCTTTCCHHHHHHH--HHCSEEEHHHHHHTSSSCH
T ss_pred --CCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHhccchhHHHHHHHH--HhCCcccHHHHHHHhCCCH
Confidence 2455577777776630 001122222222211111 111 1111211111111111 1234467889999999999
Q ss_pred HHHHHHHHHhhc
Q 010689 249 ATLMKRLIEFEN 260 (504)
Q Consensus 249 ~TIrkr~kE~~~ 260 (504)
.|+++.++.+.+
T Consensus 326 ~Ta~r~L~~L~e 337 (373)
T 2qc0_A 326 QTASVYLKQLCD 337 (373)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998875
No 369
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=31.11 E-value=33 Score=29.32 Aligned_cols=27 Identities=11% Similarity=0.064 Sum_probs=22.9
Q ss_pred CCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 234 KFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 234 ~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
..|+++|++.+|+|..||.+--+.+..
T Consensus 75 G~syreIA~~~g~S~aTIsRv~r~L~~ 101 (119)
T 3kor_A 75 GYTYATIEQESGASTATISRVKRSLQW 101 (119)
T ss_dssp TCCHHHHHHHHCCCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 399999999999999999986666543
No 370
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=31.07 E-value=71 Score=23.79 Aligned_cols=33 Identities=6% Similarity=-0.061 Sum_probs=28.4
Q ss_pred CCCcHHHHHHHhCcChHHHHHHHHHHHHHhccc
Q 010689 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (504)
Q Consensus 132 ~p~tL~dIs~~~~vs~~~Lg~~~~~L~~~L~i~ 164 (504)
...+..+||..++++...+......+.+.|+..
T Consensus 30 ~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~~~ 62 (79)
T 1x3u_A 30 AGLPNKSIAYDLDISPRTVEVHRANVMAKMKAK 62 (79)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 346889999999999999999988888888753
No 371
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=31.02 E-value=22 Score=29.19 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=20.0
Q ss_pred CCCCCCCCC--cccccCCCceecCcCce
Q 010689 3 WCSSCARHV--TGHRPYDSQLCCDRCGK 28 (504)
Q Consensus 3 ~Cp~Cgs~~--iv~D~~~G~~VC~~CG~ 28 (504)
.||.|+... +.+++..|...|-.||.
T Consensus 39 ~CPfh~e~~pSf~V~~~k~~~~Cf~cg~ 66 (103)
T 1d0q_A 39 LCPFHGEKTPSFSVSPEKQIFHCFGCGA 66 (103)
T ss_dssp CCSSSCCSSCCEEEETTTTEEEETTTCC
T ss_pred ECCCCCCCCCcEEEEcCCCEEEECCCCC
Confidence 699998753 44566778999999994
No 372
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=30.67 E-value=39 Score=28.12 Aligned_cols=28 Identities=7% Similarity=0.109 Sum_probs=25.8
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
-++++.+||+.++++.+|+.+.++.+..
T Consensus 46 ~~~~~~~la~~l~~s~~tvs~~l~~L~~ 73 (145)
T 2a61_A 46 GPKRPGELSVLLGVAKSTVTGLVKRLEA 73 (145)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCchhHHHHHHHHHH
Confidence 4799999999999999999999999875
No 373
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=30.65 E-value=14 Score=32.59 Aligned_cols=29 Identities=17% Similarity=0.379 Sum_probs=19.8
Q ss_pred CCCCCCCCCccccc-CCCceecCcCceeec
Q 010689 3 WCSSCARHVTGHRP-YDSQLCCDRCGKVLE 31 (504)
Q Consensus 3 ~Cp~Cgs~~iv~D~-~~G~~VC~~CG~Vle 31 (504)
.|-.||+..+.+-. .-|..+|..|.-|--
T Consensus 27 ~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR 56 (140)
T 2olm_A 27 KCFDCDQRGPTYVNMTVGSFVCTSCSGSLR 56 (140)
T ss_dssp SCTTTCSSCCCEEETTTTEEECHHHHHHHT
T ss_pred cCCCCCCCCCCceeeccCEEEchhccchhc
Confidence 58888877665543 348888888877653
No 374
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=30.65 E-value=29 Score=26.39 Aligned_cols=40 Identities=10% Similarity=0.013 Sum_probs=30.2
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhccCCCCCChHHHHHHHh
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~t~~~~lt~~~~~~~~~ 276 (504)
..+||+++|..+||+..||.+-.+. .....+++.+.++..
T Consensus 22 ~gltq~elA~~~gis~~~is~~E~G----~~~~p~~~~l~~ia~ 61 (78)
T 3qq6_A 22 KGYSLSELAEKAGVAKSYLSSIERN----LQTNPSIQFLEKVSA 61 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT----SCCCCBHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC----CCCCCCHHHHHHHHH
Confidence 4589999999999999999875542 134567777777654
No 375
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=30.44 E-value=39 Score=28.82 Aligned_cols=28 Identities=18% Similarity=0.236 Sum_probs=24.2
Q ss_pred CCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 234 KFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 234 ~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
..+..+||..+||+..||++.++.+...
T Consensus 48 G~s~~~iA~~lgis~~TV~rw~~~~~~~ 75 (149)
T 1k78_A 48 GVRPCDISRQLRVSHGCVSKILGRYYET 75 (149)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 4688999999999999999988887643
No 376
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=30.38 E-value=72 Score=24.51 Aligned_cols=32 Identities=6% Similarity=-0.014 Sum_probs=27.9
Q ss_pred CCcHHHHHHHhCcChHHHHHHHHHHHHHhccc
Q 010689 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (504)
Q Consensus 133 p~tL~dIs~~~~vs~~~Lg~~~~~L~~~L~i~ 164 (504)
..+..+||..++++..++......+.+.|+..
T Consensus 36 g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 67 (82)
T 1je8_A 36 GLPNKMIARRLDITESTVKVHVKHMLKKMKLK 67 (82)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 37899999999999999999888888888753
No 377
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=30.36 E-value=13 Score=32.48 Aligned_cols=28 Identities=18% Similarity=0.504 Sum_probs=15.4
Q ss_pred CCCCCCCCCccccc-CCCceecCcCceee
Q 010689 3 WCSSCARHVTGHRP-YDSQLCCDRCGKVL 30 (504)
Q Consensus 3 ~Cp~Cgs~~iv~D~-~~G~~VC~~CG~Vl 30 (504)
.|-.||+..+.+-. .-|..+|..|.-|-
T Consensus 29 ~CaDCg~~~P~WaS~n~GvfiC~~CsgiH 57 (134)
T 2iqj_A 29 FCADCQSKGPRWASWNIGVFICIRCAGIH 57 (134)
T ss_dssp BCTTTCCBSCCEEETTTTEEECHHHHHHH
T ss_pred cCCcCcCCCCCeEEecCCEEEhHhhhHHH
Confidence 46666665544332 23666666665553
No 378
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=30.28 E-value=63 Score=26.95 Aligned_cols=38 Identities=11% Similarity=0.051 Sum_probs=30.8
Q ss_pred HHHHHHhcCCC-CcHHHHHHHhCcChHHHHHHHHHHHHH
Q 010689 123 LYLACRQKSKP-FLLIDFSNYLNINVYELGAVYLQLCQV 160 (504)
Q Consensus 123 LYiACR~~~~p-~tL~dIs~~~~vs~~~Lg~~~~~L~~~ 160 (504)
+|.+....+-| .|..+||+.++++..++.+....|.+.
T Consensus 31 il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~ 69 (123)
T 3r0a_A 31 VMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEK 69 (123)
T ss_dssp HHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 44455556667 899999999999999999888888764
No 379
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=30.14 E-value=60 Score=27.09 Aligned_cols=50 Identities=4% Similarity=0.025 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHhhhccCHHHHHHHHHHhhccCCCCCChHHHHHH
Q 010689 219 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMAR 274 (504)
Q Consensus 219 IAAAalylAa~~~g~~~t~keIa~v~~Vse~TIrkr~kE~~~t~~~~lt~~~~~~~ 274 (504)
|.-+.-||-.. ...++++.+||+.+|+|+.++.+.+++.. .+|+.+|...
T Consensus 13 i~~~~~~i~~~-~~~~~sl~~lA~~~~~S~~~l~r~fk~~~-----G~s~~~~l~~ 62 (129)
T 1bl0_A 13 IHSILDWIEDN-LESPLSLEKVSERSGYSKWHLQRMFKKET-----GHSLGQYIRS 62 (129)
T ss_dssp HHHHHHHHHTT-TTSCCCCHHHHHHSSSCHHHHHHHHHHHH-----SSCHHHHHHH
T ss_pred HHHHHHHHHHc-cCCCCCHHHHHHHHCcCHHHHHHHHHHHH-----CcCHHHHHHH
Confidence 44444444433 34569999999999999999999999875 3567777654
No 380
>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=30.04 E-value=10 Score=32.85 Aligned_cols=16 Identities=31% Similarity=0.740 Sum_probs=13.4
Q ss_pred ccCCCceecCcCceee
Q 010689 15 RPYDSQLCCDRCGKVL 30 (504)
Q Consensus 15 D~~~G~~VC~~CG~Vl 30 (504)
+-.+|.++|.+||.+.
T Consensus 94 ~V~EG~L~Cp~cgr~y 109 (125)
T 3q87_A 94 DVVEGSLRCDMCGLIY 109 (125)
T ss_dssp EEEEEEEEETTTCCEE
T ss_pred EEEEEEEECCCCCCEe
Confidence 3357999999999985
No 381
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=30.04 E-value=55 Score=27.56 Aligned_cols=28 Identities=11% Similarity=0.080 Sum_probs=25.7
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
-++++++||+.++++.+|+.+.++.+..
T Consensus 50 ~~~t~~ela~~l~~s~~tvs~~l~~Le~ 77 (155)
T 1s3j_A 50 GSLKVSEIAERMEVKPSAVTLMADRLEQ 77 (155)
T ss_dssp SEEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999999875
No 382
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=29.84 E-value=32 Score=27.57 Aligned_cols=24 Identities=4% Similarity=0.163 Sum_probs=20.9
Q ss_pred CCHhhHHhhhccCHHHHHHHHHHh
Q 010689 235 FSKSDIVKIVHICEATLMKRLIEF 258 (504)
Q Consensus 235 ~t~keIa~v~~Vse~TIrkr~kE~ 258 (504)
.+|+.||+.+||+++||.+.-..+
T Consensus 25 ~gQ~~vAe~~GvdeStISR~k~~~ 48 (83)
T 1zs4_A 25 LGTEKTAEAVGVDKSQISRWKRDW 48 (83)
T ss_dssp HCHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HhhHHHHHHhCCCHHHHhhhhhhH
Confidence 579999999999999999876654
No 383
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=29.82 E-value=51 Score=28.52 Aligned_cols=37 Identities=16% Similarity=0.250 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcCC-CCCHhhHHhhhccCHHHHHHHHH
Q 010689 219 LCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (504)
Q Consensus 219 IAAAalylAa~~~g~-~~t~keIa~v~~Vse~TIrkr~k 256 (504)
|..||+=+.+. +|+ ..|+++||+.+||+..||-+.+.
T Consensus 17 Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 54 (202)
T 3lwj_A 17 ILTCSLDLFIE-KGYYNTSIRDIIALSEVGTGTFYNYFV 54 (202)
T ss_dssp HHHHHHHHHHH-HCTTTCCHHHHHHHHCSCHHHHHHHCS
T ss_pred HHHHHHHHHHH-cCcccCCHHHHHHHhCCCchhHHHHcC
Confidence 44445444433 587 59999999999999999987664
No 384
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=29.77 E-value=11 Score=36.58 Aligned_cols=26 Identities=12% Similarity=0.105 Sum_probs=0.0
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHh
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEF 258 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~ 258 (504)
-+.|.+|||+.+|||.+|+++.|+.-
T Consensus 4 ~~~ti~diA~~agVS~~TVSrvln~~ 29 (332)
T 2o20_A 4 STTTIYDVARVAGVSMATVSRVVNGN 29 (332)
T ss_dssp --------------------------
T ss_pred CCCcHHHHHHHHCCCHHHHHHHHcCC
Confidence 35799999999999999999999864
No 385
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=29.75 E-value=49 Score=28.24 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhcCC-CCCHhhHHhhhccCHHHHHHHHHH
Q 010689 218 GLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 257 (504)
Q Consensus 218 ~IAAAalylAa~~~g~-~~t~keIa~v~~Vse~TIrkr~kE 257 (504)
-|..||+=+.+. .|+ ..|+.+||+.+||+..|+-+.+..
T Consensus 13 ~Il~aa~~l~~~-~G~~~~tv~~Ia~~agvs~~t~Y~~F~s 52 (195)
T 3ppb_A 13 AILETALQLFVS-QGFHGTSTATIAREAGVATGTLFHHFPS 52 (195)
T ss_dssp HHHHHHHHHHHH-TCSTTSCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHh-cCcccCCHHHHHHHhCCChhHHHHHcCC
Confidence 455555555544 575 699999999999999999876643
No 386
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=29.69 E-value=65 Score=27.96 Aligned_cols=39 Identities=13% Similarity=-0.049 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhcCC-CCCHhhHHhhhccCHHHHHHHHHH
Q 010689 218 GLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 257 (504)
Q Consensus 218 ~IAAAalylAa~~~g~-~~t~keIa~v~~Vse~TIrkr~kE 257 (504)
-|..||+-+.+. .|+ ..|+++||+.+|||..||-..+..
T Consensus 20 ~Il~aa~~lf~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 59 (213)
T 2qtq_A 20 LLLQTASNIMRE-GDVVDISLSELSLRSGLNSALVKYYFGN 59 (213)
T ss_dssp HHHHHHHHHHHH-HTSSCCCHHHHHHHHCCCHHHHHHHHSS
T ss_pred HHHHHHHHHHHH-cCcccccHHHHHHHhCCChhhHhHhcCC
Confidence 355555544443 577 699999999999999999887754
No 387
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=29.67 E-value=52 Score=28.36 Aligned_cols=37 Identities=22% Similarity=0.134 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCC-CCCHhhHHhhhccCHHHHHHHHH
Q 010689 219 LCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (504)
Q Consensus 219 IAAAalylAa~~~g~-~~t~keIa~v~~Vse~TIrkr~k 256 (504)
|..|++=+.+. .|+ ..|+++||+.+||+..||-+++.
T Consensus 19 Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 56 (203)
T 3f1b_A 19 MLDAAVDVFSD-RGFHETSMDAIAAKAEISKPMLYLYYG 56 (203)
T ss_dssp HHHHHHHHHHH-HCTTTCCHHHHHHHTTSCHHHHHHHCC
T ss_pred HHHHHHHHHHH-cCcccccHHHHHHHhCCchHHHHHHhC
Confidence 44445444433 476 69999999999999999987664
No 388
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=29.62 E-value=61 Score=29.21 Aligned_cols=32 Identities=9% Similarity=0.164 Sum_probs=27.0
Q ss_pred HhcCCCCCHhhHHhhhccC-HHHHHHHHHHhhc
Q 010689 229 LTHGLKFSKSDIVKIVHIC-EATLMKRLIEFEN 260 (504)
Q Consensus 229 ~~~g~~~t~keIa~v~~Vs-e~TIrkr~kE~~~ 260 (504)
..+|++.|++++|+.+|++ .+||++.++.+..
T Consensus 20 ~~~g~~ps~~elA~~lgiss~~tv~~~~~~l~~ 52 (202)
T 1jhf_A 20 SQTGMPPTRAEIAQRLGFRSPNAAEEHLKALAR 52 (202)
T ss_dssp HHHSSCCCHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHhCCCccHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 3457777999999999999 9999998887654
No 389
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=29.56 E-value=14 Score=32.54 Aligned_cols=28 Identities=14% Similarity=0.251 Sum_probs=16.1
Q ss_pred CCCCCCCCCccccc-CCCceecCcCceee
Q 010689 3 WCSSCARHVTGHRP-YDSQLCCDRCGKVL 30 (504)
Q Consensus 3 ~Cp~Cgs~~iv~D~-~~G~~VC~~CG~Vl 30 (504)
.|-.||...+.+-. .-|..+|..|.-|-
T Consensus 38 ~CaDCga~~P~WaS~n~GvfiC~~CsgiH 66 (138)
T 2owa_A 38 TCFDCESRNPTWLSLSFAVFICLNCSSDH 66 (138)
T ss_dssp BCTTTCCBSCCEEETTTTEEECHHHHHHH
T ss_pred cCCCCcCCCCCeEEecCCEEEhHhhhHHH
Confidence 46666666554432 23666666666554
No 390
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=29.51 E-value=44 Score=28.26 Aligned_cols=29 Identities=24% Similarity=0.099 Sum_probs=26.3
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
+-.+++++|++.++++.+|+.+.++.+..
T Consensus 59 ~~~~t~~ela~~l~~s~~tvs~~l~~Le~ 87 (153)
T 2pex_A 59 TDERSVSEIGERLYLDSATLTPLLKRLQA 87 (153)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHhCCCcccHHHHHHHHHH
Confidence 45799999999999999999999999875
No 391
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=29.49 E-value=18 Score=32.70 Aligned_cols=30 Identities=13% Similarity=0.271 Sum_probs=0.0
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
..++|+++||..+|++..|+.+-+++|.+-
T Consensus 162 ~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 191 (213)
T 1o5l_A 162 TLPVTLEELSRLFGCARPALSRVFQELERE 191 (213)
T ss_dssp ------------------------------
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 467899999999999999999999998753
No 392
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=29.41 E-value=47 Score=27.62 Aligned_cols=28 Identities=11% Similarity=0.252 Sum_probs=25.7
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
-.+|+++|++.++++.+|+.+.++.+..
T Consensus 42 ~~~t~~~la~~l~~s~~~vs~~l~~Le~ 69 (144)
T 1lj9_A 42 PGIIQEKIAELIKVDRTTAARAIKRLEE 69 (144)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 4789999999999999999999998875
No 393
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=29.34 E-value=91 Score=27.87 Aligned_cols=33 Identities=3% Similarity=0.060 Sum_probs=28.2
Q ss_pred CCCcHHHHHHHhCcChHHHHHHHHHHHHHhccc
Q 010689 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (504)
Q Consensus 132 ~p~tL~dIs~~~~vs~~~Lg~~~~~L~~~L~i~ 164 (504)
.|.|..+||+.+|++...+.++.++|.+.=-+.
T Consensus 176 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 208 (227)
T 3d0s_A 176 HDLTQEEIAQLVGASRETVNKALADFAHRGWIR 208 (227)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE
Confidence 478999999999999999999999998754333
No 394
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=29.32 E-value=36 Score=28.18 Aligned_cols=28 Identities=11% Similarity=0.140 Sum_probs=25.6
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
-++++++||+.++++.+|+.+.++.+..
T Consensus 49 ~~~t~~ela~~l~~s~~~vs~~l~~Le~ 76 (142)
T 2fbi_A 49 GEMESYQLANQACILRPSMTGVLARLER 76 (142)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 3699999999999999999999998875
No 395
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=29.29 E-value=38 Score=31.78 Aligned_cols=29 Identities=10% Similarity=0.322 Sum_probs=26.6
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
|.+++..++|..+|||..|||..|+.+..
T Consensus 47 G~~L~e~~La~~lgVSr~~VReAL~~L~~ 75 (237)
T 3c7j_A 47 GTALRQQELATLFGVSRMPVREALRQLEA 75 (237)
T ss_dssp TCBCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCeeCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67889999999999999999999998874
No 396
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=29.14 E-value=42 Score=28.79 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=26.0
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
-.+++.++|+.++|+.+||++.++.+..-
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le~~ 81 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLATM 81 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHC
Confidence 45899999999999999999999998754
No 397
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=29.07 E-value=37 Score=25.66 Aligned_cols=22 Identities=5% Similarity=0.102 Sum_probs=20.5
Q ss_pred CHhhHHhhhccCHHHHHHHHHH
Q 010689 236 SKSDIVKIVHICEATLMKRLIE 257 (504)
Q Consensus 236 t~keIa~v~~Vse~TIrkr~kE 257 (504)
|+.++|+.+||+.+||.+.++.
T Consensus 15 sq~~~A~~Lgvsq~aVS~~~~~ 36 (65)
T 2cw1_A 15 NQEYAARALGLSQKLIEEVLKR 36 (65)
T ss_dssp CHHHHHHHSSSCHHHHHHHHHT
T ss_pred CHHHHHHHhCCCHHHHHHHHHh
Confidence 9999999999999999998854
No 398
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=29.05 E-value=32 Score=26.01 Aligned_cols=40 Identities=15% Similarity=0.079 Sum_probs=29.4
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhccCCCCCChHHHHHHHh
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~t~~~~lt~~~~~~~~~ 276 (504)
....||+++|..+||+..||.+-.+- ....+++.+.++..
T Consensus 22 ~~glsq~~lA~~~gis~~~i~~~e~g-----~~~~~~~~l~~ia~ 61 (82)
T 3s8q_A 22 EKGMTQEDLAYKSNLDRTYISGIERN-----SRNLTIKSLELIMK 61 (82)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTT-----CCCCBHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHCC-----CCCCCHHHHHHHHH
Confidence 35689999999999999999875432 23556777766654
No 399
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=28.99 E-value=32 Score=26.01 Aligned_cols=39 Identities=10% Similarity=0.102 Sum_probs=29.5
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhccCCCCCChHHHHHHHh
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~t~~~~lt~~~~~~~~~ 276 (504)
...||.++|..+||+..||.+-.+- ....+++.+.++..
T Consensus 26 ~gltq~elA~~~gis~~~is~~e~g-----~~~~~~~~l~~l~~ 64 (83)
T 3f6w_A 26 AGITQKELAARLGRPQSFVSKTENA-----ERRLDVIEFMDFCR 64 (83)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT-----SSCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC-----CCCCCHHHHHHHHH
Confidence 4589999999999999999876542 23567777776654
No 400
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=28.86 E-value=82 Score=29.24 Aligned_cols=32 Identities=9% Similarity=0.038 Sum_probs=27.7
Q ss_pred CCCcHHHHHHHhCcChHHHHHHHHHHHHHhcc
Q 010689 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 163 (504)
Q Consensus 132 ~p~tL~dIs~~~~vs~~~Lg~~~~~L~~~L~i 163 (504)
.|.+..+||+.+|++...+.++.++|.+.=-|
T Consensus 216 l~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI 247 (260)
T 3kcc_A 216 IKITRQEIGQIVGCSRETVGRILKMLEDQNLI 247 (260)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHTTSE
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHCCCE
Confidence 47899999999999999999999999875433
No 401
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=28.74 E-value=41 Score=29.46 Aligned_cols=30 Identities=3% Similarity=0.056 Sum_probs=26.5
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
.-+.++.+|++.++++.+||.+.++.+.+.
T Consensus 69 ~~~~t~~eLa~~lgls~stvs~hL~~L~~a 98 (151)
T 3f6v_A 69 SGEQTVNNLAAHFPASRSAISQHLRVLTEA 98 (151)
T ss_dssp GCCEEHHHHHTTSSSCHHHHHHHHHHHHHT
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 346899999999999999999999998753
No 402
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=28.71 E-value=38 Score=26.77 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=19.9
Q ss_pred CHhhHHhhhccCHHHHHHHHHHh
Q 010689 236 SKSDIVKIVHICEATLMKRLIEF 258 (504)
Q Consensus 236 t~keIa~v~~Vse~TIrkr~kE~ 258 (504)
.+.+.|+.+||+..|+.++++.+
T Consensus 56 N~s~AA~~LGISR~TLyrKLkk~ 78 (81)
T 1umq_A 56 NVSETARRLNMHRRTLQRILAKR 78 (81)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTS
T ss_pred CHHHHHHHhCCCHHHHHHHHHHh
Confidence 35678999999999999999865
No 403
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=28.70 E-value=12 Score=33.06 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=15.7
Q ss_pred CCCCCCCCCccccc-CCCceecCcCceee
Q 010689 3 WCSSCARHVTGHRP-YDSQLCCDRCGKVL 30 (504)
Q Consensus 3 ~Cp~Cgs~~iv~D~-~~G~~VC~~CG~Vl 30 (504)
.|-.||...+.+-. .-|..+|..|.-|-
T Consensus 39 ~CaDCga~~P~WaS~n~GvfiC~~CsgiH 67 (144)
T 2p57_A 39 ACFDCGAKNPSWASITYGVFLCIDCSGVH 67 (144)
T ss_dssp BCTTTCCBSCCEEEGGGTEEECHHHHHHH
T ss_pred cCCCCcCCCCCeEEeccCEEEhhhchHHH
Confidence 46666666554432 23666666665543
No 404
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=28.67 E-value=64 Score=27.02 Aligned_cols=38 Identities=8% Similarity=0.063 Sum_probs=31.8
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhccCCCCCChHHHHHH
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMAR 274 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~t~~~~lt~~~~~~~ 274 (504)
....++.+||..+|+|..++++.++... .+|+.+|...
T Consensus 91 ~~~~sl~~lA~~~g~S~~~f~r~Fk~~~-----G~tp~~y~~~ 128 (133)
T 1u8b_A 91 ETPVTLEALADQVAMSPFHLHRLFKATT-----GMTPKAWQQA 128 (133)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHHT-----SSCHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHH-----CcCHHHHHHH
Confidence 5679999999999999999999998765 4667777654
No 405
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=28.60 E-value=53 Score=27.76 Aligned_cols=29 Identities=3% Similarity=0.113 Sum_probs=26.2
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
+-.+++++|++.++++.+|+.+.++.+..
T Consensus 55 ~~~~t~~ela~~l~i~~~tvs~~l~~Le~ 83 (155)
T 3cdh_A 55 NDAMMITRLAKLSLMEQSRMTRIVDQMDA 83 (155)
T ss_dssp CSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34799999999999999999999998875
No 406
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=28.48 E-value=37 Score=25.60 Aligned_cols=22 Identities=9% Similarity=0.090 Sum_probs=20.2
Q ss_pred CHhhHHhhhccCHHHHHHHHHH
Q 010689 236 SKSDIVKIVHICEATLMKRLIE 257 (504)
Q Consensus 236 t~keIa~v~~Vse~TIrkr~kE 257 (504)
|+.++|+.+||+..||.+-.+-
T Consensus 13 sq~~lA~~lgvs~~~is~~e~g 34 (79)
T 3bd1_A 13 SVSALAASLGVRQSAISNWRAR 34 (79)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHC
Confidence 9999999999999999987764
No 407
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=28.47 E-value=1e+02 Score=25.91 Aligned_cols=26 Identities=8% Similarity=0.148 Sum_probs=24.4
Q ss_pred CCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 235 FSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 235 ~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
+|+.+||+.+++++.||.+.++.+..
T Consensus 52 ps~~~LA~~l~~s~~~V~~~l~~Le~ 77 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRLLQ 77 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 89999999999999999999998864
No 408
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=28.44 E-value=33 Score=25.82 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=21.0
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHH
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLI 256 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~k 256 (504)
....||.++|..+||+..||.+-.+
T Consensus 21 ~~glsq~~lA~~~gis~~~i~~~e~ 45 (84)
T 2ef8_A 21 EASLSQSELAIFLGLSQSDISKIES 45 (84)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 3468999999999999999987554
No 409
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=28.44 E-value=36 Score=31.60 Aligned_cols=28 Identities=14% Similarity=-0.015 Sum_probs=24.7
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
...|.+|||...++|+.||+.+++.+..
T Consensus 189 ~g~s~~eIa~~l~is~~tV~~~~~~~~~ 216 (236)
T 2q0o_A 189 KGKTASVTANLTGINARTVQHYLDKARA 216 (236)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5678999999999999999999887754
No 410
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=28.34 E-value=60 Score=25.76 Aligned_cols=31 Identities=6% Similarity=-0.021 Sum_probs=27.9
Q ss_pred CcHHHHHHHhCcChHHHHHHHHHHHHHhccc
Q 010689 134 FLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (504)
Q Consensus 134 ~tL~dIs~~~~vs~~~Lg~~~~~L~~~L~i~ 164 (504)
.+.++||..++++..++......+.+.|+..
T Consensus 43 ~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 43 LTNKQIADRMFLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 5789999999999999999999999988764
No 411
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=28.33 E-value=37 Score=24.97 Aligned_cols=39 Identities=5% Similarity=0.035 Sum_probs=29.4
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhccCCCCCChHHHHHHHh
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~t~~~~lt~~~~~~~~~ 276 (504)
...|+.++|+.+||+..||.+-.+- ....+++.+.++..
T Consensus 22 ~g~s~~~lA~~~gis~~~i~~~e~g-----~~~~~~~~l~~ia~ 60 (76)
T 3bs3_A 22 KQRTNRWLAEQMGKSENTISRWCSN-----KSQPSLDMLVKVAE 60 (76)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT-----SSCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC-----CCCCCHHHHHHHHH
Confidence 4689999999999999999876542 23456777777654
No 412
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=28.31 E-value=46 Score=28.06 Aligned_cols=28 Identities=14% Similarity=0.095 Sum_probs=25.7
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
-++|+.+||+.++++.+|+.+.++.+..
T Consensus 54 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 81 (154)
T 2qww_A 54 PGISVADLTKRLIITGSSAAANVDGLIS 81 (154)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4699999999999999999999998875
No 413
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=28.27 E-value=72 Score=27.28 Aligned_cols=28 Identities=14% Similarity=0.285 Sum_probs=23.6
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
-++|+++||+.++++.+|+.+.++.+..
T Consensus 51 ~~~t~~eLa~~l~~~~~tvsr~v~~Le~ 78 (148)
T 4fx0_A 51 IDLTMSELAARIGVERTTLTRNLEVMRR 78 (148)
T ss_dssp ---CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 4689999999999999999999998864
No 414
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=28.19 E-value=33 Score=27.44 Aligned_cols=23 Identities=9% Similarity=0.186 Sum_probs=20.5
Q ss_pred CCCHhhHHhhhccCHHHHHHHHH
Q 010689 234 KFSKSDIVKIVHICEATLMKRLI 256 (504)
Q Consensus 234 ~~t~keIa~v~~Vse~TIrkr~k 256 (504)
.++|+++|+.+||++.||..-.+
T Consensus 32 GikQ~eLAK~iGIsqsTLSaIen 54 (83)
T 2l1p_A 32 DMNQSSLAKECPLSQSMISSIVN 54 (83)
T ss_dssp TSCHHHHHHHSSSCHHHHHHHHT
T ss_pred hcCHHHHHHHcCCCHHHHHHHHc
Confidence 78999999999999999987554
No 415
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=28.11 E-value=94 Score=28.21 Aligned_cols=33 Identities=12% Similarity=0.051 Sum_probs=27.9
Q ss_pred C-CCcHHHHHHHhCcCh-HHHHHHHHHHHHHhccc
Q 010689 132 K-PFLLIDFSNYLNINV-YELGAVYLQLCQVLYIA 164 (504)
Q Consensus 132 ~-p~tL~dIs~~~~vs~-~~Lg~~~~~L~~~L~i~ 164 (504)
. |.+..+||+.+|++. ..+.|+.++|.+.=-|.
T Consensus 167 ~~~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~ 201 (238)
T 2bgc_A 167 LDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIV 201 (238)
T ss_dssp CSCCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEE
T ss_pred eccCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEE
Confidence 5 789999999999999 79999999997753333
No 416
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=27.96 E-value=57 Score=26.15 Aligned_cols=29 Identities=14% Similarity=0.056 Sum_probs=25.9
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
+-.+++++|+..++++..||.+.++-+..
T Consensus 34 ~~gi~qkeLa~~~~l~~~tvt~iLk~LE~ 62 (91)
T 2dk5_A 34 NKGIWSRDVRYKSNLPLTEINKILKNLES 62 (91)
T ss_dssp TTCEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45799999999999999999999998754
No 417
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=27.95 E-value=45 Score=30.19 Aligned_cols=37 Identities=19% Similarity=0.094 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhcCC-CCCHhhHHhhhccCHHHHHHHHH
Q 010689 219 LCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (504)
Q Consensus 219 IAAAalylAa~~~g~-~~t~keIa~v~~Vse~TIrkr~k 256 (504)
|..||+-+.+. .|+ ..|+++||+.+||+..||-..+.
T Consensus 49 Il~aA~~lf~e-~G~~~~t~~~IA~~aGvs~~tlY~~F~ 86 (236)
T 3q0w_A 49 ILATAENLLED-RPLADISVDDLAKGAGISRPTFYFYFP 86 (236)
T ss_dssp HHHHHHHHHHH-SCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHH-cCcccCCHHHHHHHhCCcHHHHHHHCC
Confidence 55555544433 587 79999999999999999987654
No 418
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=27.87 E-value=52 Score=28.70 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHhcCC-CCCHhhHHhhhccCHHHHHHHHH
Q 010689 217 SGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (504)
Q Consensus 217 ~~IAAAalylAa~~~g~-~~t~keIa~v~~Vse~TIrkr~k 256 (504)
.-|..||+-+.+. .|+ ..|+++||+.+||+..|+=..+.
T Consensus 15 ~~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 54 (189)
T 3vp5_A 15 NRVYDACLNEFQT-HSFHEAKIMHIVKALDIPRGSFYQYFE 54 (189)
T ss_dssp HHHHHHHHHHHHH-SCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHH-CCcccccHHHHHHHhCCChHHHHHHCC
Confidence 3455566655544 576 69999999999999999976654
No 419
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=27.81 E-value=66 Score=28.78 Aligned_cols=32 Identities=9% Similarity=-0.031 Sum_probs=27.6
Q ss_pred CCCcHHHHHHHhCcChHHHHHHHHHHHHHhcc
Q 010689 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 163 (504)
Q Consensus 132 ~p~tL~dIs~~~~vs~~~Lg~~~~~L~~~L~i 163 (504)
.|.+..+||+.+|++...+.+..++|.+.=-|
T Consensus 186 ~~lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I 217 (230)
T 3iwz_A 186 LRVSRQELARLVGCSREMAGRVLKKLQADGLL 217 (230)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHTTSE
T ss_pred cCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCE
Confidence 46899999999999999999999999875433
No 420
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=27.78 E-value=34 Score=26.45 Aligned_cols=40 Identities=10% Similarity=0.128 Sum_probs=30.0
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhccCCCCCChHHHHHHHh
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~t~~~~lt~~~~~~~~~ 276 (504)
....||.++|..+||+..||.+--+ .....+++.+.++..
T Consensus 25 ~~gltq~elA~~~gis~~~is~~E~-----G~~~p~~~~l~~ia~ 64 (86)
T 3eus_A 25 DAGLTQADLAERLDKPQSFVAKVET-----RERRLDVIEFAKWMA 64 (86)
T ss_dssp HTTCCHHHHHHHTTCCHHHHHHHHT-----TSSCCBHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHC-----CCCCCCHHHHHHHHH
Confidence 3568999999999999999987543 223557777777654
No 421
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=27.74 E-value=45 Score=25.31 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=30.2
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhccCCCCCChHHHHHHHh
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~t~~~~lt~~~~~~~~~ 276 (504)
....|+.++|+.+||+..||.+-.+- ....+++.+.++..
T Consensus 23 ~~glsq~~lA~~~gis~~~i~~~e~g-----~~~~~~~~l~~i~~ 62 (88)
T 2wiu_B 23 QNGWTQSELAKKIGIKQATISNFENN-----PDNTTLTTFFKILQ 62 (88)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHC-----GGGCBHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHcC-----CCCCCHHHHHHHHH
Confidence 35689999999999999999887653 22456777777654
No 422
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=27.68 E-value=1.1e+02 Score=23.28 Aligned_cols=29 Identities=14% Similarity=0.079 Sum_probs=25.8
Q ss_pred CCCcHHHHHHHhCcChHHHHHHHHHHHHH
Q 010689 132 KPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (504)
Q Consensus 132 ~p~tL~dIs~~~~vs~~~Lg~~~~~L~~~ 160 (504)
-|.+..|||+.++++...+.+....|.+.
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L~~~ 41 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLLEKA 41 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 47899999999999999999988888765
No 423
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.64 E-value=15 Score=32.29 Aligned_cols=28 Identities=18% Similarity=0.508 Sum_probs=15.7
Q ss_pred CCCCCCCCCccccc-CCCceecCcCceee
Q 010689 3 WCSSCARHVTGHRP-YDSQLCCDRCGKVL 30 (504)
Q Consensus 3 ~Cp~Cgs~~iv~D~-~~G~~VC~~CG~Vl 30 (504)
.|-.||...+.+-. .-|..+|..|.-|-
T Consensus 31 ~CaDCga~~P~WaS~n~GvfiC~~CsgiH 59 (141)
T 2crr_A 31 YCADCEAKGPRWASWNIGVFICIRCAGIH 59 (141)
T ss_dssp SCSSSCCSSCCSEETTTTEECCHHHHHHH
T ss_pred cCCCCCCCCCCeEEeccCeEEhhhhhHhH
Confidence 46666666554332 23666666665553
No 424
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=27.63 E-value=51 Score=29.59 Aligned_cols=33 Identities=15% Similarity=0.179 Sum_probs=28.2
Q ss_pred CCCcHHHHHHHhCcChHHHHHHHHHHHHHhccc
Q 010689 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (504)
Q Consensus 132 ~p~tL~dIs~~~~vs~~~Lg~~~~~L~~~L~i~ 164 (504)
.|.+..+||+.+|++..++.++.++|.+.=-|.
T Consensus 162 ~~~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~ 194 (222)
T 1ft9_A 162 VDFTVEEIANLIGSSRQTTSTALNSLIKEGYIS 194 (222)
T ss_dssp ECCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSE
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 468999999999999999999999998754343
No 425
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=27.63 E-value=16 Score=31.08 Aligned_cols=30 Identities=20% Similarity=0.418 Sum_probs=21.8
Q ss_pred CCCCCCCCCC-cccc-cCCCceecCcCceeec
Q 010689 2 VWCSSCARHV-TGHR-PYDSQLCCDRCGKVLE 31 (504)
Q Consensus 2 ~~Cp~Cgs~~-iv~D-~~~G~~VC~~CG~Vle 31 (504)
..|.+||.+. ..+. ..+|.++|..||....
T Consensus 6 ~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~K 37 (115)
T 4hc9_A 6 RECVNCGATSTPLWRRDGTGHYLCNACGLYHK 37 (115)
T ss_dssp CCCTTTCCSCCSSCEECTTSCEECHHHHHHHH
T ss_pred CCCCCCCCccCCcceECCCCCCcCcchhhhhh
Confidence 3799999874 3333 3468999999998653
No 426
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=27.53 E-value=67 Score=23.19 Aligned_cols=30 Identities=10% Similarity=-0.025 Sum_probs=25.4
Q ss_pred CCcHHHHHHHhCcChHHHHHHHHHHHHHhc
Q 010689 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLY 162 (504)
Q Consensus 133 p~tL~dIs~~~~vs~~~Lg~~~~~L~~~L~ 162 (504)
..+..+||..+|++...+.+...+..+.|.
T Consensus 31 g~s~~eIA~~lgis~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 31 GLSYADAAAVCGCPVGTIRSRVARARDALL 60 (70)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 368999999999999999888777777765
No 427
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=27.50 E-value=37 Score=24.67 Aligned_cols=40 Identities=5% Similarity=-0.051 Sum_probs=30.4
Q ss_pred CCCCCHhhHHhhhc--cCHHHHHHHHHHhhccCCCCCChHHHHHHHh
Q 010689 232 GLKFSKSDIVKIVH--ICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (504)
Q Consensus 232 g~~~t~keIa~v~~--Vse~TIrkr~kE~~~t~~~~lt~~~~~~~~~ 276 (504)
....|++++|..+| |+..||.+-.+- ....+++.+.++..
T Consensus 19 ~~glsq~~lA~~~g~~is~~~i~~~e~g-----~~~~~~~~l~~la~ 60 (71)
T 2ewt_A 19 QQGLSLHGVEEKSQGRWKAVVVGSYERG-----DRAVTVQRLAELAD 60 (71)
T ss_dssp HTTCCHHHHHHHTTTSSCHHHHHHHHHT-----CSCCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCcCCHHHHHHHHCC-----CCCCCHHHHHHHHH
Confidence 34689999999999 999999876542 23467777777755
No 428
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=27.34 E-value=28 Score=36.00 Aligned_cols=28 Identities=21% Similarity=0.676 Sum_probs=21.7
Q ss_pred CCCC--CCCCCcccccCCCceecCcCceeecc
Q 010689 3 WCSS--CARHVTGHRPYDSQLCCDRCGKVLED 32 (504)
Q Consensus 3 ~Cp~--Cgs~~iv~D~~~G~~VC~~CG~Vlee 32 (504)
.||. |++.. .+..+|.+.|..||.+.++
T Consensus 310 aC~~~~C~kkv--~~~~~g~~~C~~C~~~~~~ 339 (444)
T 4gop_C 310 ACASEGCNKKV--NLDHENNWRCEKCDRSYAT 339 (444)
T ss_dssp ECCSTTCCCBE--EECTTSCEEETTTTEEESS
T ss_pred cCCcccCCCcc--ccCCCccEECCCCCCcCcc
Confidence 5999 99863 3345789999999988653
No 429
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=27.29 E-value=41 Score=24.68 Aligned_cols=23 Identities=9% Similarity=0.351 Sum_probs=20.4
Q ss_pred CHhhHHhhhccCHHHHHHHHHHh
Q 010689 236 SKSDIVKIVHICEATLMKRLIEF 258 (504)
Q Consensus 236 t~keIa~v~~Vse~TIrkr~kE~ 258 (504)
++...|+.+||+..|+.++++.+
T Consensus 35 n~~~aA~~LGIsr~tL~rklkk~ 57 (61)
T 1g2h_A 35 STRKLAQRLGVSHTAIANKLKQY 57 (61)
T ss_dssp SHHHHHHHTTSCTHHHHHHHHTT
T ss_pred CHHHHHHHhCCCHHHHHHHHHHh
Confidence 56788999999999999999875
No 430
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=27.25 E-value=25 Score=22.81 Aligned_cols=12 Identities=17% Similarity=0.445 Sum_probs=9.2
Q ss_pred CCceecCcCcee
Q 010689 18 DSQLCCDRCGKV 29 (504)
Q Consensus 18 ~G~~VC~~CG~V 29 (504)
.|+.+|..||.+
T Consensus 3 ~gDW~C~~C~~~ 14 (32)
T 2lk0_A 3 FEDWLCNKCCLN 14 (32)
T ss_dssp CSEEECTTTCCE
T ss_pred CCCCCcCcCcCC
Confidence 477888888776
No 431
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=27.21 E-value=62 Score=28.16 Aligned_cols=38 Identities=16% Similarity=0.205 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCC-CCCHhhHHhhhccCHHHHHHHHHH
Q 010689 219 LCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 257 (504)
Q Consensus 219 IAAAalylAa~~~g~-~~t~keIa~v~~Vse~TIrkr~kE 257 (504)
|..||+-+.+. .|+ ..|+.+||+.+||+..||-+++..
T Consensus 23 Il~aa~~l~~~-~G~~~~s~~~Ia~~agvs~~t~Y~~F~s 61 (212)
T 1pb6_A 23 ILSAALDTFSQ-FGFHGTRLEQIAELAGVSKTNLLYYFPS 61 (212)
T ss_dssp HHHHHHHHHHH-HCTTTCCHHHHHHHTTSCHHHHHHHSSS
T ss_pred HHHHHHHHHHH-cCcchhhHHHHHHHHCCChhHHHHhCCC
Confidence 44555544433 476 689999999999999999877643
No 432
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=27.21 E-value=63 Score=25.27 Aligned_cols=29 Identities=10% Similarity=0.014 Sum_probs=22.7
Q ss_pred CcHHHHHHHhCcChHHHHHHHHHHHHHhc
Q 010689 134 FLLIDFSNYLNINVYELGAVYLQLCQVLY 162 (504)
Q Consensus 134 ~tL~dIs~~~~vs~~~Lg~~~~~L~~~L~ 162 (504)
.+..+||..+|++...+.....+..+.|.
T Consensus 54 ~s~~eIA~~lgis~~tV~~~l~ra~~~Lr 82 (92)
T 3hug_A 54 WSTAQIATDLGIAEGTVKSRLHYAVRALR 82 (92)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 47899999999999888776666555553
No 433
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=27.14 E-value=36 Score=29.29 Aligned_cols=37 Identities=22% Similarity=0.156 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHhhhccCHHHHHHHHHH
Q 010689 219 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 257 (504)
Q Consensus 219 IAAAalylAa~~~g~~~t~keIa~v~~Vse~TIrkr~kE 257 (504)
|..||+=+.+.. ...|+.+||+.+||+..||-..+..
T Consensus 19 Il~aA~~lf~~~--~~~t~~~Ia~~agvs~~t~Y~~F~s 55 (190)
T 2v57_A 19 ILDAAMLVLADH--PTAALGDIAAAAGVGRSTVHRYYPE 55 (190)
T ss_dssp HHHHHHHHHTTC--TTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHc--CCCCHHHHHHHhCCCHHHHHHHcCC
Confidence 444444444433 7799999999999999999876643
No 434
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=27.13 E-value=59 Score=25.55 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=24.7
Q ss_pred CCCHhhHHhhhccCHH-HHHHHHHHhhc
Q 010689 234 KFSKSDIVKIVHICEA-TLMKRLIEFEN 260 (504)
Q Consensus 234 ~~t~keIa~v~~Vse~-TIrkr~kE~~~ 260 (504)
+.|..+||+.+|++.. +||+.|..+..
T Consensus 25 ~~ta~eiA~~Lgit~~~aVr~hL~~Le~ 52 (79)
T 1xmk_A 25 DSSALNLAKNIGLTKARDINAVLIDMER 52 (79)
T ss_dssp CEEHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 6789999999999999 99999998875
No 435
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=27.03 E-value=65 Score=28.43 Aligned_cols=38 Identities=24% Similarity=0.125 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHhhhccCHHHHHHHHHH
Q 010689 219 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 257 (504)
Q Consensus 219 IAAAalylAa~~~g~~~t~keIa~v~~Vse~TIrkr~kE 257 (504)
|..||+-+.+. .|+..|+.+||+.+||+..||-.++..
T Consensus 17 Il~aA~~lf~~-~G~~~s~~~IA~~agvs~~tiY~~F~s 54 (224)
T 1t33_A 17 LIAAALAQFGE-YGLHATTRDIAALAGQNIAAITYYFGS 54 (224)
T ss_dssp HHHHHHHHHHH-HGGGSCHHHHHHHHTSCHHHHHHHHSS
T ss_pred HHHHHHHHHHH-hCccccHHHHHHHhCCCHHHHHHhcCC
Confidence 44455544443 465599999999999999999887753
No 436
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=26.98 E-value=51 Score=27.86 Aligned_cols=29 Identities=17% Similarity=0.142 Sum_probs=26.1
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
+-++++++||..++++.+|+.+.++.+..
T Consensus 53 ~~~~~~~eLa~~l~~~~~~vs~~l~~L~~ 81 (149)
T 4hbl_A 53 ENPQTLNSIGRHLDLSSNTLTPMLKRLEQ 81 (149)
T ss_dssp SSSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999988865
No 437
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=26.96 E-value=13 Score=36.12 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=0.0
Q ss_pred CCCHhhHHhhhccCHHHHHHHHHHhhccCCCCCChHHHHHHHh
Q 010689 234 KFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (504)
Q Consensus 234 ~~t~keIa~v~~Vse~TIrkr~kE~~~t~~~~lt~~~~~~~~~ 276 (504)
+.|.+|||+.+|||.+|+++.|+.-. ..+.-|.+-..+...
T Consensus 4 ~~ti~diA~~agVS~~TVSr~Ln~~~--~vs~~tr~rV~~~~~ 44 (339)
T 3h5o_A 4 GVTMHDVAKAAGVSAITVSRVLNQPQ--QVSEQLREKVMQAVD 44 (339)
T ss_dssp -------------------------------------------
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCC--CCCHHHHHHHHHHHH
Confidence 57899999999999999999998632 223444444544443
No 438
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=26.88 E-value=61 Score=28.20 Aligned_cols=38 Identities=13% Similarity=0.207 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHhhhccCHHHHHHHHHH
Q 010689 219 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 257 (504)
Q Consensus 219 IAAAalylAa~~~g~~-~t~keIa~v~~Vse~TIrkr~kE 257 (504)
|..||+=+.+. .|+. .|+.+||+.+||+..||-+.+..
T Consensus 19 Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 57 (220)
T 3lhq_A 19 ILDVALRLFSQ-QGVSATSLAEIANAAGVTRGAIYWHFKN 57 (220)
T ss_dssp HHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHH-cCcccCCHHHHHHHhCCCceeehhhcCC
Confidence 44455444433 4875 99999999999999999876643
No 439
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=26.86 E-value=48 Score=28.30 Aligned_cols=38 Identities=24% Similarity=0.289 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCC-CCCHhhHHhhhccCHHHHHHHHHH
Q 010689 219 LCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 257 (504)
Q Consensus 219 IAAAalylAa~~~g~-~~t~keIa~v~~Vse~TIrkr~kE 257 (504)
|..||+=+... .|+ ..|+.+||+.+|||..|+-+.+..
T Consensus 13 Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 51 (194)
T 2g7s_A 13 ILQCARTLIIR-GGYNSFSYADISQVVGIRNASIHHHFPS 51 (194)
T ss_dssp HHHHHHHHHHH-HCGGGCCHHHHHHHHCCCHHHHHHHCSS
T ss_pred HHHHHHHHHHH-cCcccCCHHHHHHHhCCCchHHHHHcCC
Confidence 44555544443 576 599999999999999999876643
No 440
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=26.77 E-value=52 Score=28.10 Aligned_cols=29 Identities=7% Similarity=0.137 Sum_probs=26.2
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
+-.+++++||+.++++.+|+.+.++.+..
T Consensus 62 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 90 (159)
T 3s2w_A 62 EDGINQESLSDYLKIDKGTTARAIQKLVD 90 (159)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999998875
No 441
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=26.69 E-value=66 Score=26.05 Aligned_cols=32 Identities=16% Similarity=0.190 Sum_probs=27.9
Q ss_pred CCcHHHHHHHhCcChHHHHHHHHHHHHHhccc
Q 010689 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (504)
Q Consensus 133 p~tL~dIs~~~~vs~~~Lg~~~~~L~~~L~i~ 164 (504)
..+.+|||..++++..++......+.+.|+..
T Consensus 49 G~s~~EIA~~L~iS~~TV~~~l~ri~~KLgv~ 80 (99)
T 1p4w_A 49 GFLVTEIAKKLNRSIKTISSQKKSAMMKLGVD 80 (99)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 35789999999999999999888888888764
No 442
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=26.68 E-value=45 Score=27.66 Aligned_cols=26 Identities=8% Similarity=0.207 Sum_probs=22.9
Q ss_pred CCCHhhHHhhhccCHHHHHHHHHHhh
Q 010689 234 KFSKSDIVKIVHICEATLMKRLIEFE 259 (504)
Q Consensus 234 ~~t~keIa~v~~Vse~TIrkr~kE~~ 259 (504)
..|.++||+.++||++||.+-.+.+.
T Consensus 39 ~~si~elA~~~~vS~aTv~Rf~kklG 64 (111)
T 2o3f_A 39 ESTVNEISALANSSDAAVIRLCXSLG 64 (111)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHCCCHHHHHHHHHHcC
Confidence 46889999999999999999888764
No 443
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=26.67 E-value=32 Score=28.39 Aligned_cols=29 Identities=10% Similarity=0.143 Sum_probs=26.2
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
+-++++++||+.++++.+|+.+.++.+..
T Consensus 45 ~~~~~~~ela~~l~~~~~tvs~~l~~L~~ 73 (139)
T 3bja_A 45 SGKVSMSKLIENMGCVPSNMTTMIQRMKR 73 (139)
T ss_dssp SCSEEHHHHHHHCSSCCTTHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 34799999999999999999999998875
No 444
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=26.65 E-value=36 Score=27.85 Aligned_cols=38 Identities=16% Similarity=0.314 Sum_probs=28.4
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhccCCCCCChHHHHHHHh
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~t~~~~lt~~~~~~~~~ 276 (504)
....||+++|..+||+..||.+-= .+.-+++-+..+..
T Consensus 47 ~~glTQ~eLA~~~gvs~~~is~~E-------~G~~~~~~l~~i~~ 84 (101)
T 4ghj_A 47 NRDLTQSEVAEIAGIARKTVLNAE-------KGKVQLDIMIAILM 84 (101)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHH-------TTCCBHHHHHHHHH
T ss_pred HcCCCHHHHHHHcCCCHHHHHHHH-------CCCCCHHHHHHHHH
Confidence 356999999999999999998642 34566766666544
No 445
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=26.59 E-value=50 Score=28.23 Aligned_cols=39 Identities=15% Similarity=0.137 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHhcCC-CCCHhhHHhhhccCHHHHHHHHH
Q 010689 217 SGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (504)
Q Consensus 217 ~~IAAAalylAa~~~g~-~~t~keIa~v~~Vse~TIrkr~k 256 (504)
.-|..||+-+.+. .|+ ..|+++||+.+|||..||-+.+.
T Consensus 13 ~~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 52 (196)
T 3col_A 13 VKIQDAVAAIILA-EGPAGVSTTKVAKRVGIAQSNVYLYFK 52 (196)
T ss_dssp HHHHHHHHHHHHH-HCGGGCCHHHHHHHHTSCHHHHHTTCS
T ss_pred HHHHHHHHHHHHh-cCcccCCHHHHHHHhCCcHHHHHHHhC
Confidence 3455556555544 477 69999999999999999976554
No 446
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=26.57 E-value=44 Score=25.72 Aligned_cols=22 Identities=9% Similarity=0.024 Sum_probs=19.5
Q ss_pred CHhhHHhhhccCHHHHHHHHHH
Q 010689 236 SKSDIVKIVHICEATLMKRLIE 257 (504)
Q Consensus 236 t~keIa~v~~Vse~TIrkr~kE 257 (504)
++.++|+.+|||..||.+.+.-
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHhC
Confidence 5899999999999999988654
No 447
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=26.56 E-value=63 Score=24.89 Aligned_cols=42 Identities=2% Similarity=-0.038 Sum_probs=31.8
Q ss_pred cCCCCCHhhHHhhhccCHHHHHHHHHHhhccCCCCCChHHHHHHHhh
Q 010689 231 HGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKE 277 (504)
Q Consensus 231 ~g~~~t~keIa~v~~Vse~TIrkr~kE~~~t~~~~lt~~~~~~~~~~ 277 (504)
....+||.++|..+||+..||.+-.+. ....+++.+.++...
T Consensus 23 ~~~glsq~~lA~~~gis~~~is~~e~g-----~~~p~~~~l~~la~~ 64 (91)
T 1x57_A 23 QSKGLTQKDLATKINEKPQVIADYESG-----RAIPNNQVLGKIERA 64 (91)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHHHHT-----CSCCCHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHcC-----CCCCCHHHHHHHHHH
Confidence 456789999999999999999876653 234677777777553
No 448
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=26.51 E-value=44 Score=27.79 Aligned_cols=28 Identities=11% Similarity=0.217 Sum_probs=25.5
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
-.+++++||+.++++.+|+.+.++.+..
T Consensus 52 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 79 (127)
T 2frh_A 52 KEYYLKDIINHLNYKQPQVVKAVKILSQ 79 (127)
T ss_dssp SEEEHHHHHHHSSSHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6799999999999999999999988764
No 449
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=26.49 E-value=59 Score=28.36 Aligned_cols=37 Identities=14% Similarity=0.090 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCC-CCCHhhHHhhhccCHHHHHHHHH
Q 010689 219 LCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (504)
Q Consensus 219 IAAAalylAa~~~g~-~~t~keIa~v~~Vse~TIrkr~k 256 (504)
|..||+=+.+. .|+ ..|+++||+.+||+..||-++|.
T Consensus 36 Il~aa~~l~~~-~G~~~~tv~~Ia~~agvs~~t~Y~~F~ 73 (218)
T 3dcf_A 36 IIKVATELFRE-KGYYATSLDDIADRIGFTKPAIYYYFK 73 (218)
T ss_dssp HHHHHHHHHHH-TCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHH-cCcccCcHHHHHHHhCCCHHHHHHHcC
Confidence 44445444433 576 59999999999999999987664
No 450
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=26.35 E-value=1.8e+02 Score=23.93 Aligned_cols=31 Identities=13% Similarity=0.109 Sum_probs=27.4
Q ss_pred hcCCCCcHHHHHHHhCcChHHHHHHHHHHHHH
Q 010689 129 QKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 160 (504)
Q Consensus 129 ~~~~p~tL~dIs~~~~vs~~~Lg~~~~~L~~~ 160 (504)
.++ |.+..+|+..++++...+.+....|.+.
T Consensus 51 ~~~-~~t~~ela~~l~~~~~tvs~~l~~Le~~ 81 (148)
T 3nrv_A 51 SAS-DCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
T ss_dssp HSS-SBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 344 8999999999999999999998888876
No 451
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=26.35 E-value=54 Score=27.48 Aligned_cols=27 Identities=11% Similarity=0.312 Sum_probs=23.6
Q ss_pred CCCCcHHHHHHHhCcChHHHHHHHHHH
Q 010689 131 SKPFLLIDFSNYLNINVYELGAVYLQL 157 (504)
Q Consensus 131 ~~p~tL~dIs~~~~vs~~~Lg~~~~~L 157 (504)
..+.++.+||..+|++...+.+.|++.
T Consensus 91 ~~~~sl~~lA~~~g~S~~~f~r~Fk~~ 117 (133)
T 1u8b_A 91 ETPVTLEALADQVAMSPFHLHRLFKAT 117 (133)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 568999999999999999998877754
No 452
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=26.32 E-value=45 Score=25.97 Aligned_cols=39 Identities=21% Similarity=0.197 Sum_probs=28.9
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhccCCCCCChHHHHHHHh
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~t~~~~lt~~~~~~~~~ 276 (504)
...|+.++|+.+||+..||.+-.+- ....+.+.+.++..
T Consensus 20 ~gltq~~lA~~~gis~~~is~~e~g-----~~~~~~~~~~~i~~ 58 (94)
T 2ict_A 20 LNVSLREFARAMEIAPSTASRLLTG-----KAALTPEMAIKLSV 58 (94)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHHT-----SSCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC-----CCCCCHHHHHHHHH
Confidence 4579999999999999999987653 22456666666544
No 453
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=26.20 E-value=67 Score=27.48 Aligned_cols=40 Identities=10% Similarity=0.199 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHhcCC-CCCHhhHHhhhccCHHHHHHHHH
Q 010689 216 PSGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (504)
Q Consensus 216 P~~IAAAalylAa~~~g~-~~t~keIa~v~~Vse~TIrkr~k 256 (504)
..-|..||+=+.+. +|+ ..|+++||+.+|||..||-+.+.
T Consensus 12 r~~Il~aa~~lf~~-~G~~~~t~~~IA~~agvs~~tlY~~F~ 52 (197)
T 3rd3_A 12 RQHLLDTGYRIMAV-KGFSGVGLNEILQSAGVPKGSFYHYFK 52 (197)
T ss_dssp HHHHHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHTTTCS
T ss_pred HHHHHHHHHHHHHH-CCcccCCHHHHHHHhCCChhhHHHHcC
Confidence 33455555544443 577 59999999999999999976543
No 454
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=26.17 E-value=42 Score=31.35 Aligned_cols=28 Identities=14% Similarity=0.109 Sum_probs=25.0
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
...|.++||...++|+.||+.+++.+..
T Consensus 189 ~G~s~~eIa~~l~is~~tV~~~~~~~~~ 216 (237)
T 3szt_A 189 VGKTYGEIGLILSIDQRTVKFHIVNAMR 216 (237)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4588999999999999999999988764
No 455
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=26.03 E-value=35 Score=29.78 Aligned_cols=41 Identities=17% Similarity=0.118 Sum_probs=30.1
Q ss_pred ChhHHHHHHHHHHHHhcCCC-CCHhhHHhhhccCHHHHHHHHH
Q 010689 215 KPSGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 256 (504)
Q Consensus 215 ~P~~IAAAalylAa~~~g~~-~t~keIa~v~~Vse~TIrkr~k 256 (504)
+-.-|..||+-+.+. .|+. .|+++||+.+||+..|+=+.+.
T Consensus 14 ~r~~Il~aa~~lf~~-~G~~~~tv~~Ia~~agvs~~t~Y~~F~ 55 (195)
T 2iu5_A 14 TQKIIAKAFKDLMQS-NAYHQISVSDIMQTAKIRRQTFYNYFQ 55 (195)
T ss_dssp HHHHHHHHHHHHHHH-SCGGGCCHHHHHHHHTSCGGGGGGTCS
T ss_pred HHHHHHHHHHHHHHh-CCCCeeCHHHHHHHhCCCHHHHHHHcC
Confidence 344566666655544 6775 9999999999999999865543
No 456
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=26.02 E-value=43 Score=31.45 Aligned_cols=29 Identities=10% Similarity=0.216 Sum_probs=24.7
Q ss_pred CCCC-CHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 232 GLKF-SKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 232 g~~~-t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
|.++ |..++|+..|||..|||+.|..+..
T Consensus 30 g~~lPse~~La~~~~vSr~tvr~Al~~L~~ 59 (236)
T 3edp_A 30 GMLMPNETALQEIYSSSRTTIRRAVDLLVE 59 (236)
T ss_dssp CC--CCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4566 8999999999999999999999875
No 457
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=25.99 E-value=60 Score=27.96 Aligned_cols=37 Identities=30% Similarity=0.318 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHhhhccCHHHHHHHHH
Q 010689 219 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 256 (504)
Q Consensus 219 IAAAalylAa~~~g~~-~t~keIa~v~~Vse~TIrkr~k 256 (504)
|..||+-+.+. .|+. .|+.+||+.+|||..||-..+.
T Consensus 22 Il~aa~~l~~~-~G~~~~s~~~Ia~~agvs~~t~Y~~F~ 59 (206)
T 3kz9_A 22 LMEIALEVFAR-RGIGRGGHADIAEIAQVSVATVFNYFP 59 (206)
T ss_dssp HHHHHHHHHHH-SCCSSCCHHHHHHHHTSCHHHHHHHCC
T ss_pred HHHHHHHHHHh-cCcccccHHHHHHHhCCCHHHHHHHcC
Confidence 55555544433 5876 9999999999999999977654
No 458
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=25.85 E-value=75 Score=27.61 Aligned_cols=40 Identities=13% Similarity=0.200 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHhcCC-CCCHhhHHhhhccCHHHHHHHHHH
Q 010689 217 SGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 257 (504)
Q Consensus 217 ~~IAAAalylAa~~~g~-~~t~keIa~v~~Vse~TIrkr~kE 257 (504)
.-|..||+=+.+. .|+ ..|+.+||+.+||+..||-..+..
T Consensus 20 ~~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 60 (207)
T 2rae_A 20 DRISTVGIELFTE-QGFDATSVDEVAEASGIARRTLFRYFPS 60 (207)
T ss_dssp HHHHHHHHHHHHH-HCTTTSCHHHHHHHTTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHH-cCcccCCHHHHHHHhCCCcchHhhhCCC
Confidence 3455555544443 577 599999999999999999776653
No 459
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=25.75 E-value=1.1e+02 Score=25.32 Aligned_cols=70 Identities=13% Similarity=0.109 Sum_probs=38.8
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHHHHhCcc--cCCCchh---HHHHHHHHHHHHhcCCCCcHHHHHHHhC--cChHHH
Q 010689 78 MRQMKNALNIGESDEIVHVAKRFYGIAVARNF--TKGRRTE---QVQASCLYLACRQKSKPFLLIDFSNYLN--INVYEL 150 (504)
Q Consensus 78 I~~i~~~L~Lp~~~~i~e~A~~iyk~a~~~~~--~rGR~~~---~vaAACLYiACR~~~~p~tL~dIs~~~~--vs~~~L 150 (504)
+..+|..||++ ...+.. +++.....+. ..|+... ......+-+ ..+-..+..+|+..++ ++..+|
T Consensus 25 ~~~ia~~lgis--~~Tv~r---~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~---~~~~~~s~~~i~~~lg~~~s~~tV 96 (141)
T 1u78_A 25 LHEMSRKISRS--RHCIRV---YLKDPVSYGTSKRAPRRKALSVRDERNVIRA---ASNSCKTARDIRNELQLSASKRTI 96 (141)
T ss_dssp HHHHHHHHTCC--HHHHHH---HHHSGGGTTCCCCCCCCCSSCHHHHHHHHHH---HHHCCCCHHHHHHHTTCCSCHHHH
T ss_pred HHHHHHHHCcC--HHHHHH---HHHcccccCCcCCCCCCCcCCHHHHHHHHHH---HhCCCCCHHHHHHHHCCCccHHHH
Confidence 67889999999 655543 3333322222 2354332 111112211 2223478999999988 677777
Q ss_pred HHHHH
Q 010689 151 GAVYL 155 (504)
Q Consensus 151 g~~~~ 155 (504)
.+.++
T Consensus 97 ~r~l~ 101 (141)
T 1u78_A 97 LNVIK 101 (141)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
No 460
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=25.66 E-value=1e+02 Score=26.34 Aligned_cols=28 Identities=14% Similarity=0.107 Sum_probs=25.6
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
-.+++++||+.++++.+|+.+.++.+..
T Consensus 59 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 86 (162)
T 3k0l_A 59 PNLSNAKLAERSFIKPQSANKILQDLLA 86 (162)
T ss_dssp TTCCHHHHHHHHTSCGGGHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3799999999999999999999998865
No 461
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=25.53 E-value=38 Score=24.40 Aligned_cols=23 Identities=13% Similarity=0.039 Sum_probs=20.2
Q ss_pred HhhHHhhhccCHHHHHHHHHHhh
Q 010689 237 KSDIVKIVHICEATLMKRLIEFE 259 (504)
Q Consensus 237 ~keIa~v~~Vse~TIrkr~kE~~ 259 (504)
+.+||...||+..||++..+.+.
T Consensus 28 ~~~vA~~~gIs~~tl~~W~~~~~ 50 (59)
T 2glo_A 28 QRATARKYNIHRRQIQKWLQCES 50 (59)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHH
Confidence 89999999999999998876554
No 462
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=25.50 E-value=13 Score=32.81 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=28.5
Q ss_pred hcCCCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 230 THGLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 230 ~~g~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
..|.+.+..++|+.+|||..|+|.+++.+...
T Consensus 23 ~~~~~ls~~eLa~~lgvSr~~vr~al~~L~~~ 54 (163)
T 2gqq_A 23 QKDGRISNVELSKRVGLSPTPCLERVRRLERQ 54 (163)
T ss_dssp HHCSSCCTTGGGTSSSCCTTTSSSTHHHHHHH
T ss_pred HhCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 45888999999999999999999999998753
No 463
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=25.45 E-value=39 Score=26.84 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=20.7
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHH
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLI 256 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~k 256 (504)
...||.++|+.+||+..||.+--+
T Consensus 42 ~glsq~elA~~lgvs~~~is~~E~ 65 (99)
T 2ppx_A 42 LKLTQEEFSARYHIPLGTLRDWEQ 65 (99)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHc
Confidence 568999999999999999987643
No 464
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=25.43 E-value=34 Score=25.83 Aligned_cols=22 Identities=5% Similarity=0.022 Sum_probs=18.4
Q ss_pred CCCcHHHHHHHhCcChHHHHHH
Q 010689 132 KPFLLIDFSNYLNINVYELGAV 153 (504)
Q Consensus 132 ~p~tL~dIs~~~~vs~~~Lg~~ 153 (504)
...++.|||..+||+..++.++
T Consensus 8 ~~~t~~diA~~aGVS~sTVSr~ 29 (67)
T 2l8n_A 8 TAATMKDVALKAKVSTATVSRA 29 (67)
T ss_dssp -CCCHHHHHHHTTCCHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHH
Confidence 3578999999999999988764
No 465
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=25.40 E-value=40 Score=26.01 Aligned_cols=39 Identities=10% Similarity=0.060 Sum_probs=29.5
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhccCCCCCChHHHHHHHh
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 276 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~t~~~~lt~~~~~~~~~ 276 (504)
...||.++|..+||+..||.+-.+- ....+++.+.++..
T Consensus 29 ~glsq~~lA~~~gis~~~is~~e~g-----~~~~~~~~l~~ia~ 67 (92)
T 1lmb_3 29 LGLSQESVADKMGMGQSGVGALFNG-----INALNAYNAALLAK 67 (92)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT-----SSCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC-----CCCCCHHHHHHHHH
Confidence 4579999999999999999876542 23466777776654
No 466
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=25.40 E-value=41 Score=31.08 Aligned_cols=30 Identities=7% Similarity=0.236 Sum_probs=26.8
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhcc
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFENT 261 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~t 261 (504)
+-.+++++||+.++|+.+|+++.++.+.+-
T Consensus 18 ~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~ 47 (214)
T 3hrs_A 18 HNKITNKEIAQLMQVSPPAVTEMMKKLLAE 47 (214)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 557899999999999999999999998753
No 467
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.38 E-value=16 Score=32.48 Aligned_cols=27 Identities=15% Similarity=0.345 Sum_probs=12.6
Q ss_pred CCCCCCCCCccccc-CCCceecCcCcee
Q 010689 3 WCSSCARHVTGHRP-YDSQLCCDRCGKV 29 (504)
Q Consensus 3 ~Cp~Cgs~~iv~D~-~~G~~VC~~CG~V 29 (504)
.|-.||...+.+-. .-|..+|..|--|
T Consensus 31 ~CaDCga~~P~WaS~n~GvfiC~~Csgi 58 (149)
T 2crw_A 31 VCFDCGAKNPSWASITYGVFLCIDCSGS 58 (149)
T ss_dssp BCSSSCCBSCCCEETTTTEECCHHHHHH
T ss_pred cCCCCcCCCCCcEEeccCEEEchhcchh
Confidence 35555554443322 2355555555444
No 468
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=25.33 E-value=70 Score=27.56 Aligned_cols=38 Identities=13% Similarity=0.138 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhcCC-CCCHhhHHhhhccCHHHHHHHHH
Q 010689 218 GLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (504)
Q Consensus 218 ~IAAAalylAa~~~g~-~~t~keIa~v~~Vse~TIrkr~k 256 (504)
-|..||+=+.++ +|+ ..|+++||+.+|||..||-..+.
T Consensus 15 ~Il~aA~~lf~~-~G~~~~s~~~Ia~~agvs~~t~Y~~F~ 53 (203)
T 3b81_A 15 ELANKIWDIFIA-NGYENTTLAFIINKLGISKGALYHYFS 53 (203)
T ss_dssp HHHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHHTTCS
T ss_pred HHHHHHHHHHHH-cCcccCcHHHHHHHhCCCchhHHHHcC
Confidence 345555544443 576 59999999999999999975543
No 469
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=25.33 E-value=47 Score=31.17 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=26.1
Q ss_pred CCCC-CHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 232 GLKF-SKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 232 g~~~-t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
|.++ +..++|+..|||..|||+.|..+..
T Consensus 26 g~~lPse~~La~~~~vSr~tvr~Al~~L~~ 55 (239)
T 3bwg_A 26 GDKLPVLETLMAQFEVSKSTITKSLELLEQ 55 (239)
T ss_dssp TCBCCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5666 8999999999999999999999875
No 470
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=25.27 E-value=46 Score=27.97 Aligned_cols=28 Identities=14% Similarity=0.159 Sum_probs=19.8
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
-.+|+++||+.++++.+|+.+.++.+..
T Consensus 56 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~ 83 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRRGASITSMLQGLEK 83 (148)
T ss_dssp TCCCHHHHHHC------CHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 6799999999999999999999998875
No 471
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=25.24 E-value=1.7e+02 Score=23.88 Aligned_cols=41 Identities=12% Similarity=0.022 Sum_probs=31.5
Q ss_pred HHHHHHhcCCCCcHHHHHHHhCcChHHHHHHHHHHHHHhcc
Q 010689 123 LYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 163 (504)
Q Consensus 123 LYiACR~~~~p~tL~dIs~~~~vs~~~Lg~~~~~L~~~L~i 163 (504)
|++..+..+-|.++.+|++.++++...+.+....|.+.=-+
T Consensus 37 L~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli 77 (139)
T 3eco_A 37 LGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLI 77 (139)
T ss_dssp HHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCE
Confidence 44444433368999999999999999999999988775433
No 472
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=25.16 E-value=65 Score=32.43 Aligned_cols=31 Identities=16% Similarity=0.226 Sum_probs=28.0
Q ss_pred hcCCCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 230 THGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 230 ~~g~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
..+-++|..||++.+++|.+||.+++++|.+
T Consensus 26 ~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~ 56 (406)
T 1z6r_A 26 DQLGPVSRIDLSRLAQLAPASITKIVHEMLE 56 (406)
T ss_dssp HSSCSCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHcCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999999999986
No 473
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=25.14 E-value=55 Score=29.17 Aligned_cols=29 Identities=7% Similarity=0.154 Sum_probs=26.2
Q ss_pred CCCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 232 GLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 232 g~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
+-.+|+++||..++++.+|+.+.++.+..
T Consensus 55 ~~~~t~~eLa~~l~is~~tvs~~l~~Le~ 83 (189)
T 3nqo_A 55 EEETTLNNIARKMGTSKQNINRLVANLEK 83 (189)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45799999999999999999999998864
No 474
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=25.12 E-value=45 Score=33.42 Aligned_cols=30 Identities=13% Similarity=0.248 Sum_probs=27.7
Q ss_pred cCCCCCHhhHHhhh--ccCHHHHHHHHHHhhc
Q 010689 231 HGLKFSKSDIVKIV--HICEATLMKRLIEFEN 260 (504)
Q Consensus 231 ~g~~~t~keIa~v~--~Vse~TIrkr~kE~~~ 260 (504)
.+.+++.+++++.. +||+.|||+=+.++.+
T Consensus 33 ~~~pV~s~~La~~~~l~VS~aTIRrDL~~LE~ 64 (338)
T 1stz_A 33 NKKPVSSQRVLEVSNIEFSSATIRNDMKKLEY 64 (338)
T ss_dssp HCSCBCHHHHHHHSCCCSCHHHHHHHHHHHHH
T ss_pred cCCCccHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 47899999999998 9999999999999886
No 475
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=25.10 E-value=70 Score=27.74 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhcCC-CCCHhhHHhhhccCHHHHHHHHH
Q 010689 219 LCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (504)
Q Consensus 219 IAAAalylAa~~~g~-~~t~keIa~v~~Vse~TIrkr~k 256 (504)
|..||+=+-+. .|+ ..|+.+||+.+|||..||=.++.
T Consensus 17 Il~aA~~lf~e-~G~~~~t~~~IA~~agvsk~tlY~~F~ 54 (192)
T 2fq4_A 17 ILSASYELLLE-SGFKAVTVDKIAERAKVSKATIYKWWP 54 (192)
T ss_dssp HHHHHHHHHHH-HCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHH-cCcccccHHHHHHHcCCCHHHHHHHCC
Confidence 44444443332 576 58999999999999999976664
No 476
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=25.07 E-value=73 Score=28.17 Aligned_cols=33 Identities=6% Similarity=-0.042 Sum_probs=28.5
Q ss_pred CCCcHHHHHHHhCcChHHHHHHHHHHHHHhccc
Q 010689 132 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (504)
Q Consensus 132 ~p~tL~dIs~~~~vs~~~Lg~~~~~L~~~L~i~ 164 (504)
.|.+..+||+.+|++...+.++.++|.+.=-+.
T Consensus 162 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 194 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVSRVLHALAEEGVVR 194 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 468999999999999999999999998865444
No 477
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=25.04 E-value=50 Score=30.51 Aligned_cols=29 Identities=14% Similarity=0.345 Sum_probs=26.2
Q ss_pred CCCC-CHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 232 GLKF-SKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 232 g~~~-t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
|.++ +-.++|+..|||..|||..++.+..
T Consensus 28 G~~LPsE~eLa~~~gVSR~tVReAL~~L~~ 57 (239)
T 1hw1_A 28 GTILPAERELSELIGVTRTTLREVLQRLAR 57 (239)
T ss_dssp TSBCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6777 7999999999999999999998874
No 478
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=25.01 E-value=4.2e+02 Score=24.56 Aligned_cols=140 Identities=12% Similarity=0.178 Sum_probs=74.2
Q ss_pred cChHHHHHHHHHHHHHHHHHHcCCCC--chHHHHHHHHHHHHHHhCcccCCCchh-HHHHHHHHHHHHhcCC-CCcHHHH
Q 010689 64 GASRERLMEKAFDDMRQMKNALNIGE--SDEIVHVAKRFYGIAVARNFTKGRRTE-QVQASCLYLACRQKSK-PFLLIDF 139 (504)
Q Consensus 64 ~~srer~L~~a~~~I~~i~~~L~Lp~--~~~i~e~A~~iyk~a~~~~~~rGR~~~-~vaAACLYiACR~~~~-p~tL~dI 139 (504)
.++.-.....++..|..++..++... +......+..++-.++++.+..+|... ..+..|+...+..... ...+.+|
T Consensus 65 ~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l 144 (278)
T 4ffb_C 65 TDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELV 144 (278)
T ss_dssp TCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 34555666778888998888876542 133444566667767776665555432 2222333333333222 2334444
Q ss_pred HHHhC-cChHHHHHHHHHHHHHhcccccccccccCCccchHHHHHHhh---CCCCCHHHHHHHHHHHHHhcc
Q 010689 140 SNYLN-INVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL---LPGGNKKVCDTARDILASMKR 207 (504)
Q Consensus 140 s~~~~-vs~~~Lg~~~~~L~~~L~i~~~~~~~~~~dP~~~I~r~~~~L---~~~l~~~V~~~A~~I~~~~~~ 207 (504)
...++ =+++....+...|.+.+..--. ..++|..++..++..| ..+-++.|...|..++-.+.+
T Consensus 145 ~~~l~~Knpkv~~~~l~~l~~~l~~fg~----~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 145 IPFFEKKLPKLIAAAANCVYELMAAFGL----TNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp GGGGGCSCHHHHHHHHHHHHHHHHHHTT----TTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHhCC----CcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 44443 3555555555555555532101 1244555555544332 234678899999888877653
No 479
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=24.98 E-value=46 Score=29.02 Aligned_cols=41 Identities=12% Similarity=0.223 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHhcCC-CCCHhhHHhhhccCHHHHHHHHH
Q 010689 216 PSGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (504)
Q Consensus 216 P~~IAAAalylAa~~~g~-~~t~keIa~v~~Vse~TIrkr~k 256 (504)
-.-|..||+=+-..-+|+ ..|+.+||+.+|||..||-..+.
T Consensus 26 r~~Il~aA~~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 67 (212)
T 3nxc_A 26 REEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYRHFP 67 (212)
T ss_dssp HHHHHHHHHHHHHC------CCHHHHHHHTTSCHHHHHTTCS
T ss_pred HHHHHHHHHHHHHhcCChhhcCHHHHHHHhCCChhHHHHHCC
Confidence 344555555432223575 59999999999999999976543
No 480
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=24.95 E-value=14 Score=31.40 Aligned_cols=29 Identities=17% Similarity=0.233 Sum_probs=24.9
Q ss_pred CCCC-CHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 232 GLKF-SKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 232 g~~~-t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
|.++ |..++|...|||..|||+.|..+..
T Consensus 32 G~~lPs~~~La~~~~vSr~tvr~Al~~L~~ 61 (126)
T 3ic7_A 32 EGRIPSVREYASIVEVNANTVMRSYEYLQS 61 (126)
T ss_dssp TSEECCTTTTTTCC-CCSGGGHHHHHHHHT
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5565 8899999999999999999999875
No 481
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=24.88 E-value=1.2e+02 Score=26.02 Aligned_cols=66 Identities=8% Similarity=0.012 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHHHhcCCCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 193 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 193 ~V~~~A~~I~~~~~~~~l~~GR~P~~IAAAalylAa~~~g~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
.+......+-+.+.+..-..|=.|.-+. +|++....-+-.+++++||+.++++.+||.+.++.+..
T Consensus 23 ~l~~~~~~~~~~~~~~~~~~glt~~q~~--vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 88 (168)
T 3u2r_A 23 QLWRTYDRMKAIEEEIFSQFELSAQQYN--TLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDD 88 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCHHHHH--HHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCHHHHH--HHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHH
No 482
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=24.88 E-value=55 Score=28.12 Aligned_cols=39 Identities=13% Similarity=0.057 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhcCC-CCCHhhHHhhhccCHHHHHHHHHH
Q 010689 218 GLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 257 (504)
Q Consensus 218 ~IAAAalylAa~~~g~-~~t~keIa~v~~Vse~TIrkr~kE 257 (504)
-|..||+=+.+. +|+ ..|+++||+.+|||..|+-+.+..
T Consensus 12 ~Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 51 (206)
T 3dew_A 12 RLMEVATELFAQ-KGFYGVSIRELAQAAGASISMISYHFGG 51 (206)
T ss_dssp HHHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHSCH
T ss_pred HHHHHHHHHHhc-CCcccCcHHHHHHHhCCCHHHHHHHcCC
Confidence 355555544433 587 799999999999999999877654
No 483
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=24.87 E-value=56 Score=29.29 Aligned_cols=38 Identities=13% Similarity=0.137 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhcCCCCCHhhHHhhhc--cCHHHHHHHHHHhh
Q 010689 218 GLCGAALYVSALTHGLKFSKSDIVKIVH--ICEATLMKRLIEFE 259 (504)
Q Consensus 218 ~IAAAalylAa~~~g~~~t~keIa~v~~--Vse~TIrkr~kE~~ 259 (504)
++.=|+||++ +.++|.++++++++ ++..+|+..+.++.
T Consensus 10 ~~iEAlLf~~----~~pvs~~~La~~~~~~~~~~~v~~~l~~L~ 49 (162)
T 1t6s_A 10 RSLEALIFSS----EEPVNLQTLSQITAHKFTPSELQEAVDELN 49 (162)
T ss_dssp HHHHHHHHHC----SSCBCHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHc----CCCCCHHHHHHHhCcCCCHHHHHHHHHHHH
Confidence 3445566554 78999999999999 99999999988876
No 484
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=24.79 E-value=92 Score=26.74 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHhhhccCHHHHHHHHH
Q 010689 219 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 256 (504)
Q Consensus 219 IAAAalylAa~~~g~~-~t~keIa~v~~Vse~TIrkr~k 256 (504)
|..||+=+-+. .|+. .|+.+||+.+||+..||=..+.
T Consensus 8 Il~aA~~lf~~-~G~~~~s~~~IA~~agvsk~t~Y~~F~ 45 (190)
T 3vpr_A 8 ILEEAAKLFTE-KGYEATSVQDLAQALGLSKAALYHHFG 45 (190)
T ss_dssp HHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHHHHHS
T ss_pred HHHHHHHHHHH-hCcccCCHHHHHHHhCCCHHHHHHHcC
Confidence 33444433332 4775 8999999999999999977664
No 485
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=24.72 E-value=2.1e+02 Score=22.79 Aligned_cols=72 Identities=10% Similarity=0.165 Sum_probs=0.0
Q ss_pred CcHHHHHHHhCcChHHHHHH-----------HHHHHHHhcccccccccccCCccch----HHHHHHhh-CCCCCHHHHHH
Q 010689 134 FLLIDFSNYLNINVYELGAV-----------YLQLCQVLYIADESNVLKQVDPSIF----LHKFTDRL-LPGGNKKVCDT 197 (504)
Q Consensus 134 ~tL~dIs~~~~vs~~~Lg~~-----------~~~L~~~L~i~~~~~~~~~~dP~~~----I~r~~~~L-~~~l~~~V~~~ 197 (504)
.|..++|..+|++...|.+. ..+|++.|+++....+....++... +..+...+ . ++.+-...
T Consensus 23 lsq~~lA~~~gis~~~i~~~e~g~~~p~~~~l~~la~~l~v~~~~l~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~ 100 (114)
T 3op9_A 23 LKNHQIAELLNVQTRTVAYYMSGETKPDIEKLIRLATYFHLSIDELVGYVQEDKVWNDLSLKQWLLSLNL--RSEEEIAK 100 (114)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTSSCCCHHHHHHHHHHHTCCHHHHHTCCCC--CCSCHHHHHHHHHGGG--SCHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHhcCCCcccccCcHHHHHHHHHHHc--CCHHHHHH
Q ss_pred HHHHHHHhcc
Q 010689 198 ARDILASMKR 207 (504)
Q Consensus 198 A~~I~~~~~~ 207 (504)
...+++.+..
T Consensus 101 i~~~i~~i~~ 110 (114)
T 3op9_A 101 IKILVDTVET 110 (114)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
No 486
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=24.71 E-value=64 Score=27.90 Aligned_cols=39 Identities=10% Similarity=0.093 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhcCC-CCCHhhHHhhhccCHHHHHHHHHH
Q 010689 218 GLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 257 (504)
Q Consensus 218 ~IAAAalylAa~~~g~-~~t~keIa~v~~Vse~TIrkr~kE 257 (504)
-|..||+=+.++ .|+ ..|+++||+.+||+..||-.++..
T Consensus 8 ~Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 47 (185)
T 2yve_A 8 MILRTAIDYIGE-YSLETLSYDSLAEATGLSKSGLIYHFPS 47 (185)
T ss_dssp HHHHHHHHHHHH-SCSTTCCHHHHHHHHCCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHH-cChhhccHHHHHHHhCCChHHHHHhCcC
Confidence 345555544433 576 599999999999999999877653
No 487
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=24.70 E-value=60 Score=26.43 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.3
Q ss_pred CHhhHHhhhccCHHHHHHHHHHh
Q 010689 236 SKSDIVKIVHICEATLMKRLIEF 258 (504)
Q Consensus 236 t~keIa~v~~Vse~TIrkr~kE~ 258 (504)
.+...|+.+||+..|+.++++.+
T Consensus 73 n~~~AA~~LGIsR~TL~rkLkk~ 95 (98)
T 1eto_A 73 NQTRAALMMGINRGTLRKKLKKY 95 (98)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHT
T ss_pred CHHHHHHHhCCCHHHHHHHHHHh
Confidence 45678999999999999999875
No 488
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=24.67 E-value=46 Score=29.38 Aligned_cols=31 Identities=13% Similarity=0.228 Sum_probs=27.3
Q ss_pred CCCCCHhhHHhhh-----ccCHHHHHHHHHHhhccC
Q 010689 232 GLKFSKSDIVKIV-----HICEATLMKRLIEFENTD 262 (504)
Q Consensus 232 g~~~t~keIa~v~-----~Vse~TIrkr~kE~~~t~ 262 (504)
.--.||.|+++.+ +||++||++-++++.-+.
T Consensus 17 ~~~~tq~eL~~~L~~~G~~VtqaTisRDL~eL~~vK 52 (149)
T 1b4a_A 17 NDIETQDELVDRLREAGFNVTQATVSRDIKEMQLVK 52 (149)
T ss_dssp SCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHTTCEE
T ss_pred CCCccHHHHHHHHHHcCCCcCHHHHHHHHHHcCCeE
Confidence 4568999999999 999999999999997653
No 489
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=24.62 E-value=32 Score=32.40 Aligned_cols=26 Identities=27% Similarity=0.704 Sum_probs=19.6
Q ss_pred CCCCCCCCC-cccccCCCceecCcCce
Q 010689 3 WCSSCARHV-TGHRPYDSQLCCDRCGK 28 (504)
Q Consensus 3 ~Cp~Cgs~~-iv~D~~~G~~VC~~CG~ 28 (504)
.|-.||... ..+++..|-.+|..|+.
T Consensus 152 ~C~~cg~~~~~~fs~~~Gg~~c~~~~~ 178 (244)
T 1u5k_A 152 RCARCGAPDPEHPDPLGGQLLCSKCAA 178 (244)
T ss_dssp BCTTTCCBSCCEECTTTSSEECTTTCS
T ss_pred ccccCCCCCCCcEecccCEEECcccCC
Confidence 588898762 34677889999999864
No 490
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=24.60 E-value=73 Score=27.35 Aligned_cols=37 Identities=22% Similarity=0.157 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhcCC-CCCHhhHHhhhccCHHHHHHHHH
Q 010689 219 LCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (504)
Q Consensus 219 IAAAalylAa~~~g~-~~t~keIa~v~~Vse~TIrkr~k 256 (504)
|..||+=+.+. .|+ ..|+.+||+.+||+..||-.++.
T Consensus 13 Il~aA~~l~~~-~G~~~~t~~~IA~~Agvs~~tly~~F~ 50 (194)
T 3dpj_A 13 IVAAADELFYR-QGFAQTSFVDISAAVGISRGNFYYHFK 50 (194)
T ss_dssp HHHHHHHHHHH-HCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHH-cCcccCCHHHHHHHHCCChHHHHHHcC
Confidence 44444444433 576 69999999999999999977654
No 491
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=24.56 E-value=16 Score=33.17 Aligned_cols=52 Identities=15% Similarity=0.075 Sum_probs=0.0
Q ss_pred cccccCCChhHHHHHHHHHHHHhcCCCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 208 DWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 208 ~~l~~GR~P~~IAAAalylAa~~~g~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
.+...||.|.-. ...+-.+-.++....|..+||+.+||+.+|+.+.+++-..
T Consensus 133 ~G~~~Gr~~~~~-~~~~~~i~~l~~~G~s~~~Ia~~l~vs~~Tvyr~l~~~~~ 184 (193)
T 3uj3_X 133 KGRIGGRPPKLT-KAEWEQAGRLLAQGIPRKQVALIYDVALSTLYKKHPAKRA 184 (193)
T ss_dssp -----------------------------------------------------
T ss_pred hcccCCCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHhhh
Confidence 345568776422 2222222233334478899999999999999998887554
No 492
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=24.55 E-value=56 Score=27.83 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHhhhccCHHHHHHHHH
Q 010689 218 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 256 (504)
Q Consensus 218 ~IAAAalylAa~~~g~~-~t~keIa~v~~Vse~TIrkr~k 256 (504)
-|..||+=+-+. .|+. .|+.+||+.+|||..||-+.+.
T Consensus 14 ~Il~aa~~l~~~-~G~~~~t~~~IA~~agvs~~t~Y~~F~ 52 (191)
T 3on4_A 14 RILAVAEALIQK-DGYNAFSFKDIATAINIKTASIHYHFP 52 (191)
T ss_dssp HHHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHH-hCcccCCHHHHHHHhCCCcchhhhcCC
Confidence 344444444433 5875 9999999999999999987664
No 493
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=24.49 E-value=31 Score=31.84 Aligned_cols=27 Identities=22% Similarity=0.613 Sum_probs=17.6
Q ss_pred CCCCCCCCCcccccCCCceecCcCceee
Q 010689 3 WCSSCARHVTGHRPYDSQLCCDRCGKVL 30 (504)
Q Consensus 3 ~Cp~Cgs~~iv~D~~~G~~VC~~CG~Vl 30 (504)
.||.||...+--.+. .-..|..||...
T Consensus 115 ~Cp~Cg~g~fma~h~-dR~~CGkC~~t~ 141 (189)
T 2xzm_9 115 GCPKCGPGIFMAKHY-DRHYCGKCHLTL 141 (189)
T ss_dssp ECSTTCSSCEEEECS-SCEEETTTCCCB
T ss_pred cCCccCCCccccCcc-CCCccCCceeEE
Confidence 588888664444443 345888888764
No 494
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=24.46 E-value=93 Score=27.25 Aligned_cols=38 Identities=16% Similarity=0.044 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhcCC-CCCHhhHHhhhccCHHHHHHHHH
Q 010689 218 GLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 256 (504)
Q Consensus 218 ~IAAAalylAa~~~g~-~~t~keIa~v~~Vse~TIrkr~k 256 (504)
-|..||+=+-++ .|+ ..|+.+||+.+||+..||=..+.
T Consensus 12 ~Il~aA~~lf~~-~G~~~~s~~~IA~~aGvs~~tiY~~F~ 50 (202)
T 2d6y_A 12 RIFEAAVAEFAR-HGIAGARIDRIAAEARANKQLIYAYYG 50 (202)
T ss_dssp HHHHHHHHHHHH-HTTTSCCHHHHHHHHTCCHHHHHHHHS
T ss_pred HHHHHHHHHHHH-cCcccCCHHHHHHHhCCCHHHHHHHcC
Confidence 344444444433 576 68999999999999999987764
No 495
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=24.45 E-value=70 Score=28.12 Aligned_cols=38 Identities=18% Similarity=0.236 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHhhhccCHHHHHHHHHH
Q 010689 219 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 257 (504)
Q Consensus 219 IAAAalylAa~~~g~~-~t~keIa~v~~Vse~TIrkr~kE 257 (504)
|..||+-+.+. .|+. .|+++||+.+||+..||-..+..
T Consensus 20 Il~aA~~lf~~-~G~~~~s~~~IA~~agvs~~t~Y~~F~s 58 (221)
T 3c2b_A 20 VLDQALRLLVE-GGEKALTTSGLARAANCSKESLYKWFGD 58 (221)
T ss_dssp HHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHHSS
T ss_pred HHHHHHHHHHh-CCcccCCHHHHHHHhCCCHHHHHHhCCC
Confidence 55555544433 5764 99999999999999999877753
No 496
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=24.36 E-value=61 Score=27.84 Aligned_cols=38 Identities=13% Similarity=0.166 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhcCCCCCHhhHHhhhccCHHHHHHHHH
Q 010689 218 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 256 (504)
Q Consensus 218 ~IAAAalylAa~~~g~~~t~keIa~v~~Vse~TIrkr~k 256 (504)
-|..||+=+-+. .|+..|+++||+.+||+..||-..+.
T Consensus 13 ~Il~aA~~lf~~-~G~~~t~~~IA~~aGvs~~tly~~F~ 50 (190)
T 3jsj_A 13 RLLEAAAALTYR-DGVGIGVEALCKAAGVSKRSMYQLFE 50 (190)
T ss_dssp HHHHHHHHHHHH-HCTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHH-hCccccHHHHHHHhCCCHHHHHHHcC
Confidence 344444444333 47668999999999999999977654
No 497
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=24.31 E-value=56 Score=25.55 Aligned_cols=32 Identities=6% Similarity=0.057 Sum_probs=27.9
Q ss_pred CCcHHHHHHHhCcChHHHHHHHHHHHHHhccc
Q 010689 133 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 164 (504)
Q Consensus 133 p~tL~dIs~~~~vs~~~Lg~~~~~L~~~L~i~ 164 (504)
..+..+||..++++..++......+.+.|+..
T Consensus 44 g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 75 (91)
T 2rnj_A 44 GYSNQEIASASHITIKTVKTHVSNILSKLEVQ 75 (91)
T ss_dssp TCCTTHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 46889999999999999999888888888753
No 498
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=30.08 E-value=16 Score=28.20 Aligned_cols=40 Identities=15% Similarity=0.311 Sum_probs=34.9
Q ss_pred HHHHHHhcCC-CCcHHHHHHHhCcChHHHHHHHHHHHHHhc
Q 010689 123 LYLACRQKSK-PFLLIDFSNYLNINVYELGAVYLQLCQVLY 162 (504)
Q Consensus 123 LYiACR~~~~-p~tL~dIs~~~~vs~~~Lg~~~~~L~~~L~ 162 (504)
|..+|++.|. |-++..||..++=++..|...|++|.+.+.
T Consensus 25 IL~~cq~~G~s~~tfa~iA~~Lnks~~QV~~RF~~Lm~Lf~ 65 (70)
T 2lr8_A 25 ILLECQKRGPSSKTFAYLAAKLDKNPNQVSERFQQLMKLFE 65 (70)
Confidence 6788998887 889999999999999999999999887664
No 499
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=24.22 E-value=49 Score=27.58 Aligned_cols=28 Identities=11% Similarity=-0.024 Sum_probs=25.7
Q ss_pred CCCCHhhHHhhhccCHHHHHHHHHHhhc
Q 010689 233 LKFSKSDIVKIVHICEATLMKRLIEFEN 260 (504)
Q Consensus 233 ~~~t~keIa~v~~Vse~TIrkr~kE~~~ 260 (504)
-.+|+++||+.++++.+|+.+.++.+.+
T Consensus 50 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~ 77 (143)
T 3oop_A 50 EPISQKEIALWTKKDTPTVNRIVDVLLR 77 (143)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 5789999999999999999999998875
No 500
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=24.19 E-value=67 Score=28.15 Aligned_cols=37 Identities=14% Similarity=-0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHhhhccCHHHHHHHH
Q 010689 219 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 255 (504)
Q Consensus 219 IAAAalylAa~~~g~~~t~keIa~v~~Vse~TIrkr~ 255 (504)
|..||+-+.+..==...|+.+||+.+|||..||-+.+
T Consensus 22 Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F 58 (218)
T 3gzi_A 22 LILAARNLFIERPYAQVSIREIASLAGTDPGLIRYYF 58 (218)
T ss_dssp HHHHHHHHHHTSCCSCCCHHHHHHHHTSCTHHHHHHH
T ss_pred HHHHHHHHHHHCCCCcCCHHHHHHHhCCCHHHHHHHc
Done!