Query 010690
Match_columns 503
No_of_seqs 222 out of 1703
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 03:27:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010690.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010690hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00906 2A0303 cationic amin 100.0 5.3E-50 1.1E-54 421.4 43.7 404 22-431 5-413 (557)
2 PRK15049 L-asparagine permease 100.0 5.4E-47 1.2E-51 395.0 43.5 388 45-449 24-430 (499)
3 PRK10249 phenylalanine transpo 100.0 1.1E-46 2.4E-51 389.8 42.0 389 42-449 14-418 (458)
4 PRK10238 aromatic amino acid t 100.0 4.2E-46 9.1E-51 385.3 42.1 386 45-449 8-409 (456)
5 PRK10746 putative transport pr 100.0 9.1E-46 2E-50 382.7 43.1 386 45-449 6-411 (461)
6 PRK11387 S-methylmethionine tr 100.0 1.4E-45 3E-50 383.6 42.5 382 45-446 10-415 (471)
7 PRK11357 frlA putative fructos 100.0 1.8E-45 3.8E-50 380.7 41.5 389 45-448 4-397 (445)
8 COG0833 LysP Amino acid transp 100.0 8.9E-46 1.9E-50 367.5 33.2 386 46-449 41-454 (541)
9 TIGR01773 GABAperm gamma-amino 100.0 1.1E-44 2.4E-49 375.5 41.3 384 44-446 7-408 (452)
10 PRK10836 lysine transporter; P 100.0 2.1E-44 4.6E-49 376.2 42.0 383 45-446 11-422 (489)
11 COG1113 AnsP Gamma-aminobutyra 100.0 4.3E-45 9.4E-50 355.4 33.3 388 43-449 7-412 (462)
12 TIGR00909 2A0306 amino acid tr 100.0 6E-44 1.3E-48 368.2 43.2 390 47-445 1-393 (429)
13 PRK11049 D-alanine/D-serine/gl 100.0 5.7E-44 1.2E-48 371.0 42.3 384 44-446 15-419 (469)
14 KOG1286 Amino acid transporter 100.0 3.6E-46 7.7E-51 384.0 25.4 396 45-444 26-444 (554)
15 PRK10580 proY putative proline 100.0 9.5E-44 2E-48 368.6 43.1 386 45-449 5-409 (457)
16 PRK10644 arginine:agmatin anti 100.0 1E-43 2.2E-48 367.4 42.2 369 46-432 5-381 (445)
17 TIGR00908 2A0305 ethanolamine 100.0 9.9E-44 2.1E-48 367.5 41.1 382 44-445 2-390 (442)
18 PRK10655 potE putrescine trans 100.0 1.2E-43 2.5E-48 366.6 40.5 373 47-437 4-385 (438)
19 TIGR00911 2A0308 L-type amino 100.0 1.6E-43 3.5E-48 371.1 39.3 385 43-440 36-427 (501)
20 PRK10197 gamma-aminobutyrate t 100.0 6.3E-43 1.4E-47 360.6 40.0 371 59-448 2-390 (446)
21 PRK10435 cadB lysine/cadaverin 100.0 2E-42 4.3E-47 356.3 40.8 362 47-428 3-378 (435)
22 TIGR00905 2A0302 transporter, 100.0 2.8E-42 6.1E-47 358.9 42.3 370 47-430 5-385 (473)
23 KOG1287 Amino acid transporter 100.0 1.4E-43 3E-48 351.0 30.7 386 45-444 8-400 (479)
24 TIGR00913 2A0310 amino acid pe 100.0 2.4E-42 5.2E-47 360.8 41.5 379 48-445 1-414 (478)
25 PRK11021 putative transporter; 100.0 7.5E-42 1.6E-46 349.9 41.6 357 51-430 1-363 (410)
26 TIGR03428 ureacarb_perm permea 100.0 2.4E-41 5.1E-46 352.2 41.5 383 40-428 4-401 (475)
27 TIGR00907 2A0304 amino acid pe 100.0 2.8E-41 6E-46 352.9 40.2 390 41-438 4-418 (482)
28 TIGR03810 arg_ornith_anti argi 100.0 2.1E-40 4.5E-45 344.4 41.2 368 49-430 1-381 (468)
29 TIGR00930 2a30 K-Cl cotranspor 100.0 7.6E-41 1.7E-45 366.4 37.4 382 46-435 73-493 (953)
30 KOG1289 Amino acid transporter 100.0 4.1E-40 8.9E-45 326.3 30.0 387 34-429 33-444 (550)
31 PF13520 AA_permease_2: Amino 100.0 3.4E-39 7.4E-44 332.7 33.4 367 51-434 1-380 (426)
32 COG0531 PotE Amino acid transp 100.0 1.2E-37 2.6E-42 325.2 43.0 385 44-440 7-401 (466)
33 TIGR03813 put_Glu_GABA_T putat 100.0 3.2E-37 6.9E-42 321.3 40.6 379 49-441 1-398 (474)
34 TIGR00910 2A0307_GadC glutamat 100.0 2E-36 4.3E-41 316.0 39.8 377 48-440 3-400 (507)
35 PRK15238 inner membrane transp 100.0 9.8E-36 2.1E-40 311.5 40.8 382 47-438 5-431 (496)
36 PF00324 AA_permease: Amino ac 100.0 7.9E-39 1.7E-43 334.1 8.5 361 58-430 4-393 (478)
37 COG1115 AlsT Na+/alanine sympo 100.0 1.1E-35 2.3E-40 289.2 24.1 393 13-433 27-446 (452)
38 PF01235 Na_Ala_symp: Sodium:a 100.0 2.5E-31 5.4E-36 262.9 26.5 357 48-431 16-400 (416)
39 TIGR00835 agcS amino acid carr 100.0 6.3E-29 1.4E-33 247.3 31.3 383 14-427 13-422 (425)
40 KOG1288 Amino acid transporter 100.0 1.8E-27 3.9E-32 237.8 22.2 378 50-435 66-478 (945)
41 TIGR00837 araaP aromatic amino 100.0 1.7E-25 3.7E-30 227.0 32.0 358 58-443 4-372 (381)
42 KOG2083 Na+/K+ symporter [Inor 99.9 3.3E-26 7.1E-31 227.5 14.4 370 49-433 28-419 (643)
43 KOG2082 K+/Cl- cotransporter K 99.9 2E-24 4.3E-29 217.7 22.4 383 49-435 112-601 (1075)
44 TIGR00912 2A0309 spore germina 99.9 2.6E-20 5.5E-25 187.6 34.0 289 50-363 2-297 (359)
45 PHA02764 hypothetical protein; 99.9 6.2E-19 1.3E-23 162.8 27.3 278 42-382 5-285 (399)
46 PF03222 Trp_Tyr_perm: Tryptop 99.8 4.2E-17 9.1E-22 164.4 35.5 294 49-362 1-305 (394)
47 TIGR00796 livcs branched-chain 99.8 1.3E-16 2.8E-21 158.4 35.4 339 61-439 5-365 (378)
48 TIGR00814 stp serine transport 99.8 5.1E-17 1.1E-21 163.5 31.4 283 60-363 12-312 (397)
49 PRK09664 tryptophan permease T 99.8 2.9E-16 6.2E-21 156.7 32.6 364 52-442 10-386 (415)
50 PRK10483 tryptophan permease; 99.8 3.4E-16 7.3E-21 156.4 32.9 366 48-442 8-385 (414)
51 PRK15132 tyrosine transporter 99.8 2.7E-15 5.9E-20 150.6 34.8 291 52-363 4-303 (403)
52 COG3949 Uncharacterized membra 99.8 1.2E-15 2.7E-20 143.1 29.4 270 59-364 11-284 (349)
53 COG0814 SdaC Amino acid permea 99.7 2.5E-14 5.4E-19 145.4 34.3 300 47-362 5-315 (415)
54 PRK13629 threonine/serine tran 99.7 2.6E-14 5.6E-19 142.9 33.2 302 47-363 17-347 (443)
55 PF03845 Spore_permease: Spore 99.7 2E-13 4.4E-18 135.1 30.6 288 50-363 1-293 (320)
56 PLN03074 auxin influx permease 99.2 4.9E-08 1.1E-12 101.1 34.9 236 49-309 44-292 (473)
57 KOG1303 Amino acid transporter 99.2 7.5E-09 1.6E-13 104.8 27.9 294 47-362 34-335 (437)
58 PTZ00206 amino acid transporte 99.2 6.6E-08 1.4E-12 100.5 33.6 250 52-310 61-318 (467)
59 KOG1304 Amino acid transporter 99.2 6E-08 1.3E-12 96.9 30.4 345 48-431 44-414 (449)
60 PRK11375 allantoin permease; P 99.0 1.9E-06 4.2E-11 89.7 33.5 333 46-402 22-368 (484)
61 PF01490 Aa_trans: Transmembra 98.9 2E-10 4.4E-15 117.9 1.6 359 49-430 1-375 (409)
62 PRK15433 branched-chain amino 98.9 1.9E-06 4.1E-11 86.7 28.4 324 60-425 17-361 (439)
63 TIGR00813 sss transporter, SSS 98.9 1.7E-05 3.7E-10 81.4 33.8 288 48-358 2-322 (407)
64 COG1457 CodB Purine-cytosine p 98.8 2.3E-05 5.1E-10 79.0 33.2 245 85-361 54-300 (442)
65 PF05525 Branch_AA_trans: Bran 98.8 7.6E-06 1.7E-10 82.5 29.7 326 61-427 13-360 (427)
66 TIGR00800 ncs1 NCS1 nucleoside 98.8 7E-05 1.5E-09 77.6 38.0 111 47-160 10-122 (442)
67 PRK09442 panF sodium/panthothe 98.8 4.8E-05 1E-09 79.8 36.6 289 48-357 40-346 (483)
68 TIGR02119 panF sodium/pantothe 98.8 4.7E-05 1E-09 79.7 35.8 287 48-357 39-345 (471)
69 COG0733 Na+-dependent transpor 98.8 4.9E-06 1.1E-10 82.9 25.7 289 55-349 13-322 (439)
70 PF01566 Nramp: Natural resist 98.7 2E-05 4.4E-10 79.2 29.0 259 79-363 9-286 (358)
71 PRK11017 codB cytosine permeas 98.7 0.0004 8.7E-09 71.0 36.1 155 48-223 8-162 (404)
72 COG1953 FUI1 Cytosine/uracil/t 98.6 0.00015 3.2E-09 73.5 30.8 330 46-398 36-378 (497)
73 PF00474 SSF: Sodium:solute sy 98.5 7.7E-06 1.7E-10 83.9 19.3 288 48-357 5-319 (406)
74 PRK12488 acetate permease; Pro 98.5 0.0014 3E-08 69.8 36.3 157 48-224 66-224 (549)
75 PRK00701 manganese transport p 98.5 0.00047 1E-08 70.9 31.3 96 62-160 45-140 (439)
76 COG0591 PutP Na+/proline sympo 98.5 0.00096 2.1E-08 69.9 33.5 289 48-359 37-354 (493)
77 COG1114 BrnQ Branched-chain am 98.4 0.00067 1.5E-08 67.0 28.8 335 56-429 10-364 (431)
78 TIGR02121 Na_Pro_sym sodium/pr 98.4 0.0018 4E-08 67.9 34.6 285 48-358 35-346 (487)
79 PRK15419 proline:sodium sympor 98.4 0.0019 4.1E-08 68.1 34.5 158 48-224 39-204 (502)
80 COG1914 MntH Mn2+ and Fe2+ tra 98.4 0.0034 7.4E-08 63.5 33.7 287 49-363 15-318 (416)
81 PRK09395 actP acetate permease 98.4 0.0052 1.1E-07 65.5 37.2 154 48-223 68-225 (551)
82 PRK10484 putative transporter; 98.4 0.0039 8.5E-08 66.1 36.0 296 48-357 37-354 (523)
83 TIGR03648 Na_symport_lg probab 98.3 0.0058 1.3E-07 65.2 34.9 153 48-219 31-184 (552)
84 TIGR02358 thia_cytX probable h 98.3 0.0067 1.5E-07 61.6 34.9 247 84-363 30-277 (386)
85 PF02028 BCCT: BCCT family tra 98.3 0.003 6.6E-08 65.4 31.3 351 49-429 73-484 (485)
86 TIGR02711 symport_actP cation/ 98.3 0.0069 1.5E-07 64.5 35.2 156 48-223 66-223 (549)
87 KOG1305 Amino acid transporter 98.2 0.00039 8.5E-09 70.4 21.6 247 48-310 3-256 (411)
88 PRK09950 putative transporter; 98.0 0.029 6.3E-07 58.3 31.4 148 273-430 333-499 (506)
89 PF02133 Transp_cyt_pur: Perme 97.9 0.00051 1.1E-08 71.3 17.6 174 47-224 5-180 (440)
90 PRK09928 choline transport pro 97.6 0.11 2.5E-06 55.5 28.7 148 272-427 340-502 (679)
91 TIGR01197 nramp NRAMP (natural 97.5 0.16 3.5E-06 51.4 33.0 42 320-361 283-324 (390)
92 PRK03356 L-carnitine/gamma-but 97.4 0.22 4.9E-06 51.8 31.8 148 272-429 335-500 (504)
93 PF00209 SNF: Sodium:neurotran 97.3 0.0078 1.7E-07 63.8 16.0 67 52-119 6-73 (523)
94 COG1292 BetT Choline-glycine b 97.3 0.19 4.1E-06 51.8 24.5 152 271-430 334-498 (537)
95 COG4147 DhlC Predicted symport 97.3 0.28 6E-06 49.7 25.5 237 99-356 90-369 (529)
96 KOG2466 Uridine permease/thiam 96.8 0.31 6.7E-06 49.4 20.5 306 47-373 52-381 (572)
97 KOG4303 Vesicular inhibitory a 96.6 0.024 5.1E-07 54.6 11.2 235 46-307 112-359 (524)
98 TIGR00842 bcct choline/carniti 96.6 1 2.2E-05 46.4 32.1 147 273-427 287-450 (453)
99 COG1966 CstA Carbon starvation 95.6 3.6 7.7E-05 42.8 26.7 104 51-155 52-155 (575)
100 PF02554 CstA: Carbon starvati 95.5 3 6.5E-05 41.3 23.8 103 51-155 52-155 (376)
101 KOG3660 Sodium-neurotransmitte 95.4 0.65 1.4E-05 49.8 16.2 68 52-120 39-107 (629)
102 COG4145 PanF Na+/panthothenate 95.1 3.9 8.5E-05 40.4 25.2 284 48-356 38-343 (473)
103 PF02705 K_trans: K+ potassium 94.4 4.7 0.0001 42.3 18.9 225 179-418 130-366 (534)
104 KOG3659 Sodium-neurotransmitte 93.0 5.5 0.00012 41.9 16.2 245 53-305 84-379 (629)
105 PLN00151 potassium transporter 92.6 9.2 0.0002 42.0 18.0 172 183-368 276-454 (852)
106 PLN00149 potassium transporter 88.8 11 0.00023 41.4 14.3 175 183-368 200-381 (779)
107 PLN00148 potassium transporter 88.1 16 0.00036 40.0 15.1 172 183-368 199-377 (785)
108 TIGR00794 kup potassium uptake 85.3 21 0.00046 38.7 14.1 172 183-368 170-348 (688)
109 PLN00150 potassium ion transpo 84.4 14 0.00031 40.4 12.4 172 183-368 216-394 (779)
110 PRK10745 trkD potassium transp 78.9 59 0.0013 34.9 14.3 171 181-368 143-322 (622)
111 KOG2349 Na+:iodide/myo-inosito 76.1 9.4 0.0002 40.5 7.6 33 329-361 331-363 (585)
112 PTZ00206 amino acid transporte 71.7 63 0.0014 33.7 12.6 55 317-371 121-175 (467)
113 COG3949 Uncharacterized membra 60.4 1.7E+02 0.0037 28.8 11.8 72 287-361 39-110 (349)
114 COG4146 Predicted symporter [G 59.6 2E+02 0.0043 28.9 17.6 231 115-356 104-354 (571)
115 COG0814 SdaC Amino acid permea 57.7 2.1E+02 0.0045 29.4 13.0 87 277-363 30-118 (415)
116 PF02990 EMP70: Endomembrane p 57.0 2.7E+02 0.0058 29.6 16.2 73 273-362 252-325 (521)
117 PRK12585 putative monovalent c 43.0 81 0.0017 28.2 6.1 13 367-379 30-42 (197)
118 PF05525 Branch_AA_trans: Bran 42.4 4E+02 0.0087 27.4 16.7 73 119-208 266-338 (427)
119 PRK15015 carbon starvation pro 41.4 5.1E+02 0.011 28.3 30.5 101 53-155 85-186 (701)
120 COG3158 Kup K+ transporter [In 41.3 4.7E+02 0.01 27.9 13.2 50 178-230 145-194 (627)
121 PRK15132 tyrosine transporter 33.0 5.5E+02 0.012 26.2 13.9 50 315-364 63-112 (403)
122 PF12666 PrgI: PrgI family pro 32.8 1.8E+02 0.0038 22.5 6.2 29 46-74 12-40 (93)
123 TIGR00796 livcs branched-chain 29.5 6.1E+02 0.013 25.7 16.6 73 118-207 259-331 (378)
124 PRK15433 branched-chain amino 28.0 6.9E+02 0.015 25.9 15.8 73 118-208 269-341 (439)
125 PF06570 DUF1129: Protein of u 27.2 4.7E+02 0.01 23.7 9.0 15 3-17 37-51 (206)
126 PF13194 DUF4010: Domain of un 26.4 5.1E+02 0.011 23.8 10.0 12 353-364 34-45 (211)
127 KOG1303 Amino acid transporter 24.9 7.9E+02 0.017 25.4 11.5 93 317-416 105-197 (437)
128 PF11174 DUF2970: Protein of u 24.1 1.6E+02 0.0035 20.7 4.0 25 253-277 3-27 (56)
129 PRK00968 tetrahydromethanopter 23.7 1.9E+02 0.0041 26.4 5.3 32 272-303 204-236 (240)
130 KOG1291 Mn2+ and Fe2+ transpor 20.9 9.7E+02 0.021 25.0 18.9 53 320-373 307-359 (503)
131 KOG1304 Amino acid transporter 20.5 9.7E+02 0.021 24.9 11.3 94 326-429 133-227 (449)
No 1
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=100.00 E-value=5.3e-50 Score=421.35 Aligned_cols=404 Identities=47% Similarity=0.813 Sum_probs=343.6
Q ss_pred hhhhhhhhcccCCccCCCCcccccccccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHH
Q 010690 22 CCVRTLVRRKQVDSVHTKPERSHQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAF 101 (503)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~l~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~~~~a~ 101 (503)
+..+...|+++.+++ ++++++++|+++.+|+++++++.++|+|+|..++.++.+.+||+.+++|+++++.+++.++
T Consensus 5 ~~~~~~~r~k~~~~~----~~~~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al 80 (557)
T TIGR00906 5 TFARCLIRRKIVDLD----SREESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGF 80 (557)
T ss_pred HHHHHHhccCCcccc----cccccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHH
Confidence 445556666665541 1223469999999999999999999999999999876677999999999999999999999
Q ss_pred HHHHhhhhCCCCCccccchHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---chhhhhhhccCCCCc
Q 010690 102 CYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSAD---SLPFFMARQQIPGLG 178 (503)
Q Consensus 102 ~~~el~~~~p~~Gg~~~~~~~~lg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~ 178 (503)
+++|+++++|++||.|.|.++.+|+.+||+.+|.+++.|....+..+.+.+.++...++... ..+... ...+...
T Consensus 81 ~yaElas~~P~sGg~Y~y~~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~--~~~~~l~ 158 (557)
T TIGR00906 81 CYAEFGARVPKAGSAYLYSYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFK--LNYDGLA 158 (557)
T ss_pred HHHHHHHhCCCCCcceeeHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc--ccCCccc
Confidence 99999999999999999999999999999999999999999888888888888877664211 001000 0011111
Q ss_pred cchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC--CCCCCCCCCchhhhHHHHHH
Q 010690 179 IIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSG--YELPTGYFPFGVNGMLAGSA 256 (503)
Q Consensus 179 ~~~~~~~~i~~~~~~~i~~~g~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 256 (503)
...+.++++++++++.+|+.|+|...|++.+++.++++.++++++.++.+...++|.. ....+++.|.++.+++.+..
T Consensus 159 ~~~~~~a~~ii~l~~~ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~ 238 (557)
T TIGR00906 159 EYPDFFAVCLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAA 238 (557)
T ss_pred ccchHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHH
Confidence 2233457777788889999999999999999999999988888887776543334431 11223556777788999999
Q ss_pred HHHHhhhchHHHhhhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCchHHHHHHcchhHHHHHHH
Q 010690 257 TVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVIT 336 (503)
Q Consensus 257 ~~~~~~~G~~~~~~~~~e~k~P~k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~ 336 (503)
..+|+|.|+|..++++||+|||+|++||++..+..+++++|++.++++....|+++.+.+.|+..++.+.+.+|...++.
T Consensus 239 ~~~faf~Gfd~v~~~aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~ 318 (557)
T TIGR00906 239 TCFFAFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVA 318 (557)
T ss_pred HHHHHHhhHHHHHHhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999887777889998988888889999999
Q ss_pred HHHHHHHHHHHHhhhcchhHHHHHHHhCCCCchhhccccCCCCCchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Q 010690 337 IGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAF 416 (503)
Q Consensus 337 ~~~~~~~~~s~~~~~~~~sr~l~~la~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~i~~~~~li~~ 416 (503)
++++.+.+++.++.+++.+|++|+|||||.+|++|+|+|+|+++|++++++.++++.++.++.+++.+.++.+++.++.|
T Consensus 319 ~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~~l~~l~sig~ll~y 398 (557)
T TIGR00906 319 VGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSIGTLLAY 398 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888888899999999999999999
Q ss_pred HHHHHHHHHHhcCCC
Q 010690 417 TMVAISVLILRYVPP 431 (503)
Q Consensus 417 ~~~~~~~l~~~~~~~ 431 (503)
.+.+.+.+.+|++++
T Consensus 399 ~lv~~~~l~lR~~~~ 413 (557)
T TIGR00906 399 SLVAACVLILRYQPG 413 (557)
T ss_pred HHHHHHHHHhhcccc
Confidence 999999999998754
No 2
>PRK15049 L-asparagine permease; Provisional
Probab=100.00 E-value=5.4e-47 Score=395.04 Aligned_cols=388 Identities=23% Similarity=0.379 Sum_probs=317.8
Q ss_pred cccccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHh
Q 010690 45 QKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICV 124 (503)
Q Consensus 45 ~~l~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~l 124 (503)
++++|+++.+++.+++++.++|+|+|..++.. .+.+||..+++|++++++.++.+.+++|+++++|++||.|.|.++.+
T Consensus 24 ~~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~-~~~aGp~~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~~ 102 (499)
T PRK15049 24 EGYHKAMGNRQVQMIAIGGAIGTGLFLGAGAR-LQMAGPALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREFL 102 (499)
T ss_pred hhhhccCCHhHhHHHhhhccccchHHHhhHHH-HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHh
Confidence 34899999999999999999999999999984 68889998999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHH
Q 010690 125 GEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKEST 204 (503)
Q Consensus 125 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~ 204 (503)
||..||+.+|.+++.|...........+.++..+ ......|.| .++++++++++++|+.|+|...
T Consensus 103 G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~--------------~~~~~~~~l~~~iN~~gvk~~~ 167 (499)
T PRK15049 103 GEKAAYVAGWMYFINWAMTGIVDITAVALYMHYW-GAFGGVPQW--------------VFALAALTIVGTMNMIGVKWFA 167 (499)
T ss_pred CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCCcHH--------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998766555444444444322 111111222 2366777889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccc-----C---CCCCCCCCCCCCchhhhHHHHHHHHHHhhhchHHHhhhhhhhc
Q 010690 205 IAQAIVTTANVLAMLFVIIAGSYLGFKT-----G---WSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVK 276 (503)
Q Consensus 205 ~~~~~~~~~~~~~~l~~~i~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~k 276 (503)
+++.+++.++++.++.+++.++...... . +.....+.++.|+++.+++.++...+|+|.|+|.+++++||+|
T Consensus 168 ~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~k 247 (499)
T PRK15049 168 EMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECK 247 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 9999999999888777766654321111 1 1111122345566777777777889999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCC-CCCchHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhhcchh
Q 010690 277 NPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQP 355 (503)
Q Consensus 277 ~P~k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~s 355 (503)
||+|++||++..+...+.++|++..+.+....|+++.. ..+|+.+++++.+.++++.++.++++++.+++.++.++.++
T Consensus 248 nP~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~s 327 (499)
T PRK15049 248 DPQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTG 327 (499)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987663 45799999988888999999999999999999999999999
Q ss_pred HHHHHHHhCCCCchhhccccCCCCCchHHHHHHHHHHHHHHHh---h---CHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 010690 356 RILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFF---M---DVSALAGMVSVGTLLAFTMVAISVLILRYV 429 (503)
Q Consensus 356 r~l~~la~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~---~---~~~~l~~i~~~~~li~~~~~~~~~l~~~~~ 429 (503)
|++|++||||.+|++|+|+|++ ++|++++++++++..+..++ . .++.+.++.+...++.|.+++.+.+++|++
T Consensus 328 R~l~a~Ardg~lP~~f~kv~k~-~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~~~~li~y~~~~~~~l~~R~~ 406 (499)
T PRK15049 328 RILRSMAMGGSAPSFMAKMSRQ-HVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIASWAFIIVCQMRLRKA 406 (499)
T ss_pred HHHHHHHhcCCcCHHHHHhCCC-CCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999955 99999999888775443222 1 267788999999999999999999998876
Q ss_pred CCC----CcccCCCcchhhhhhhh
Q 010690 430 PPD----EVPVPSTLQSSIDSVSL 449 (503)
Q Consensus 430 ~~~----~~~~~~~~~~~~~~~~~ 449 (503)
.++ ++|+|.|..+....+..
T Consensus 407 ~~~~~~~~~pf~~~~~p~~~~~~l 430 (499)
T PRK15049 407 IKEGKAADVSFKLPGAPFTSWLTL 430 (499)
T ss_pred hhhcCCCCCCCcccCccHHHHHHH
Confidence 332 45788887766555444
No 3
>PRK10249 phenylalanine transporter; Provisional
Probab=100.00 E-value=1.1e-46 Score=389.84 Aligned_cols=389 Identities=22% Similarity=0.384 Sum_probs=322.2
Q ss_pred ccccccccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchH
Q 010690 42 RSHQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSY 121 (503)
Q Consensus 42 ~~~~~l~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~ 121 (503)
+++++++|+++.+++.+++++.++|+|+|..++. +.+.+||..+++|++++++.++.+++++|+++++|.+||.|.|.+
T Consensus 14 ~~~~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~-~~~~aGp~~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~ 92 (458)
T PRK10249 14 NQEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGP-AIQMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAY 92 (458)
T ss_pred CCchhhhccCcHhHhhhhhhhcccchhHHHHHHH-HHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 3445699999999999999999999999999998 467889999999999999999999999999999999999999999
Q ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhh
Q 010690 122 ICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIK 201 (503)
Q Consensus 122 ~~lg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k 201 (503)
+.+||.+||+.+|.+++.+...........+.++..++.. .|.+ .+..+++++.+.+|+.|+|
T Consensus 93 ~~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~--------------~~~~~~~~l~~~lN~~gv~ 155 (458)
T PRK10249 93 KYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPD---VPTW--------------IWAAAFFIIINAVNLVNVR 155 (458)
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc---CcHH--------------HHHHHHHHHHHHHHHhcch
Confidence 9999999999999999999877776666666666544321 1211 2356777788999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhccc------CCCCCCCCCCCCCchhhhHHHHHHHHHHhhhchHHHhhhhhhh
Q 010690 202 ESTIAQAIVTTANVLAMLFVIIAGSYLGFKT------GWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEV 275 (503)
Q Consensus 202 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~ 275 (503)
..++++.+++.++++.++++++.++...... .+.......++.|+++.+++.++...+|+|.|+|..++++||+
T Consensus 156 ~~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~ 235 (458)
T PRK10249 156 LYGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEA 235 (458)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHh
Confidence 9999999999999877777666554321111 1111111223346678888999999999999999999999999
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCC-CCCchHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhhcch
Q 010690 276 KNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQ 354 (503)
Q Consensus 276 k~P~k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~ 354 (503)
|||+|++||++..+.....++|++..+.+....|+++.. .+.|+.+++++.++++...++.++++++.+++.++.++.+
T Consensus 236 ~~P~k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 315 (458)
T PRK10249 236 RDPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVYSN 315 (458)
T ss_pred cCHhhHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888888888876654 3479999999988899999999999999999999999999
Q ss_pred hHHHHHHHhCCCCchhhccccCCCCCchHHHHHHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010690 355 PRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM------DVSALAGMVSVGTLLAFTMVAISVLILRY 428 (503)
Q Consensus 355 sr~l~~la~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~------~~~~l~~i~~~~~li~~~~~~~~~l~~~~ 428 (503)
+|++|++||||.+|++|+|.||+ ++|+++++++++++.+..+.. .++.+.++.+...++.|.+.+.+.+++|+
T Consensus 316 sR~l~a~ardg~lP~~~~kv~~~-~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~ 394 (458)
T PRK10249 316 SRMLFGLSVQGNAPKFLTRVSRR-GVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAHLRFRA 394 (458)
T ss_pred HHHHHHHhcCCCcCHHHHHhCCC-CCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999965 999999999999887655442 35667888888999999999999998885
Q ss_pred C---CCCCcccCCCcchhhhhhhh
Q 010690 429 V---PPDEVPVPSTLQSSIDSVSL 449 (503)
Q Consensus 429 ~---~~~~~~~~~~~~~~~~~~~~ 449 (503)
+ +.+++|+|.|..+....+..
T Consensus 395 ~~~~~~~~~p~~~~~~p~~~~~~l 418 (458)
T PRK10249 395 AMRRQGRETQFKALLYPFGNYLCI 418 (458)
T ss_pred HHHhcCCCCCccCCCccHHHHHHH
Confidence 2 23457888887766554433
No 4
>PRK10238 aromatic amino acid transporter; Provisional
Probab=100.00 E-value=4.2e-46 Score=385.34 Aligned_cols=386 Identities=22% Similarity=0.401 Sum_probs=321.0
Q ss_pred cccccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHh
Q 010690 45 QKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICV 124 (503)
Q Consensus 45 ~~l~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~l 124 (503)
++++|+++.++..++++++++|+|+|..++.. .+.+||+.+++|++++++.++.+++++|+++++|.+||.|+|.++.+
T Consensus 8 ~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~-~~~~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~~~ 86 (456)
T PRK10238 8 EQLKRGLKNRHIQLIALGGAIGTGLFLGSASV-IQSAGPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYW 86 (456)
T ss_pred hhhhccCcHHHHHHHHhhccccchHHHhhHHH-HHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHc
Confidence 35899999999999999999999999999984 67889999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHH
Q 010690 125 GEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKEST 204 (503)
Q Consensus 125 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~ 204 (503)
||..||+.||.+++.+....+......+++++.+++. .|.|. ...++.++...+|+.|+|...
T Consensus 87 g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~---~~~~~--------------~~~i~~~~~~~lN~~gv~~~~ 149 (456)
T PRK10238 87 GSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPE---IPTWV--------------SAAVFFVVINAINLTNVKVFG 149 (456)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---CcHHH--------------HHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999988888877777777655421 22221 255666788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc--c----CCCCCCCCCCCCCchhhhHHHHHHHHHHhhhchHHHhhhhhhhcCC
Q 010690 205 IAQAIVTTANVLAMLFVIIAGSYLGFK--T----GWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNP 278 (503)
Q Consensus 205 ~~~~~~~~~~~~~~l~~~i~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~k~P 278 (503)
+++.+++.++++.++++++.++..... + .+.+..+.+++.|+++.++..++...+|+|.|+|..++++||+|||
T Consensus 150 ~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP 229 (456)
T PRK10238 150 EMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNP 229 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCh
Confidence 999999999988877666544332111 1 1112112234456677778788888999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCC-CCCchHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhhcchhHH
Q 010690 279 QRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRI 357 (503)
Q Consensus 279 ~k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~sr~ 357 (503)
+|++||++..+.....++|+..........|+++.. .++|+.+++.+.+.++...++.+.++++.+++.++..+.++|+
T Consensus 230 ~r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~ 309 (456)
T PRK10238 230 EQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNSRM 309 (456)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998888777777877653 4579999998888888889999999999999999999999999
Q ss_pred HHHHHhCCCCchhhccccCCCCCchHHHHHHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 010690 358 LMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM------DVSALAGMVSVGTLLAFTMVAISVLILRYVPP 431 (503)
Q Consensus 358 l~~la~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~------~~~~l~~i~~~~~li~~~~~~~~~l~~~~~~~ 431 (503)
+|++||||.+|++|+|+|++ ++|++++++.++++.+..+.. .++.+.++.+...++.|.+.+.+.+++|++++
T Consensus 310 l~a~ardg~lP~~f~kv~~~-~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~ 388 (456)
T PRK10238 310 LFGLAQQGNAPKALASVDKR-GVPVNTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAHMKFRRAKQ 388 (456)
T ss_pred HHHHHhCCCccHHHHhhCcC-CCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999976 999999999999887655442 35678888888999999999999999988755
Q ss_pred C---CcccCCCcchhhhhhhh
Q 010690 432 D---EVPVPSTLQSSIDSVSL 449 (503)
Q Consensus 432 ~---~~~~~~~~~~~~~~~~~ 449 (503)
+ .++++.+..++....+.
T Consensus 389 ~~~~~~~~~~~~~p~~~~~~~ 409 (456)
T PRK10238 389 EQGVVTRFPALLYPLGNWICL 409 (456)
T ss_pred hcCCCCCCcCCCccHHHHHHH
Confidence 4 34456656666554443
No 5
>PRK10746 putative transport protein YifK; Provisional
Probab=100.00 E-value=9.1e-46 Score=382.74 Aligned_cols=386 Identities=23% Similarity=0.341 Sum_probs=321.1
Q ss_pred cccccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHh
Q 010690 45 QKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICV 124 (503)
Q Consensus 45 ~~l~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~l 124 (503)
++++|+++.++..++++++++|+|+|..++. +.+.+||+.+++|++++++.++++++++|+++++|++||.|.|.+|.+
T Consensus 6 ~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~-~l~~aGp~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~~~ 84 (461)
T PRK10746 6 PELQRGLEARHIELIALGGTIGVGLFMGAAS-TLKWAGPSVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYM 84 (461)
T ss_pred hHHhccCcHHHHHHHHHHhhhhhhHHHHhHH-HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Confidence 3588999999999999999999999999998 578899999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHH
Q 010690 125 GEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKEST 204 (503)
Q Consensus 125 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~ 204 (503)
||.+|++.+|.+++.+.........+.+.+++.++.. .|.+ ....+.+++++.+|+.|+|..+
T Consensus 85 g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~---~~~~--------------~~~~~~~~~~~~lN~~gv~~~~ 147 (461)
T PRK10746 85 SPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPE---MAQW--------------IPALIAVALVALANLAAVRLYG 147 (461)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---CchH--------------HHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999888777777777777655421 1222 1245666778889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---hccc-----CCCCCCCCCCCCCchhhhHHHHHHHHHHhhhchHHHhhhhhhhc
Q 010690 205 IAQAIVTTANVLAMLFVIIAGSYL---GFKT-----GWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVK 276 (503)
Q Consensus 205 ~~~~~~~~~~~~~~l~~~i~~~~~---~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~k 276 (503)
+++.+++.++++.++.+++.++.. ...+ ++.++.++.++.++++.++..++...+|+|.|+|..+.+++|+|
T Consensus 148 ~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~k 227 (461)
T PRK10746 148 EIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAK 227 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhc
Confidence 999999999988777776655432 1111 11222222334567788888999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCC-CCCchHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhhcchh
Q 010690 277 NPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQP 355 (503)
Q Consensus 277 ~P~k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~s 355 (503)
||+|++||++..++..+.++|++..+++...+|+++.. .++|+..++++.+.++...++.++++++.+++.++.++.++
T Consensus 228 nP~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~n~~~~~~s 307 (461)
T PRK10746 228 NPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGMYSCG 307 (461)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988765 45699999998888888899999999999999999999999
Q ss_pred HHHHHHHhCCCCchhhccccCCCCCchHHHHHHHHHHHH---HHHh-h----CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010690 356 RILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAA---LAFF-M----DVSALAGMVSVGTLLAFTMVAISVLILR 427 (503)
Q Consensus 356 r~l~~la~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~---~~~~-~----~~~~l~~i~~~~~li~~~~~~~~~l~~~ 427 (503)
|+++++||||.+|++|+|+|++ ++|++++++..+...+ +.+. . .++.+.++.+...++.|.+++.+.+++|
T Consensus 308 R~l~~~a~~g~lP~~~~~~~~~-g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r 386 (461)
T PRK10746 308 RMLYALAKNRQLPAAMAKVSRH-GVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFR 386 (461)
T ss_pred HHHHHHHhCCCcCHHHHHhCCC-CCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999965 9999999877544322 1111 1 2466888899999999999999999999
Q ss_pred cCCCC---CcccCCCcchhhhhhhh
Q 010690 428 YVPPD---EVPVPSTLQSSIDSVSL 449 (503)
Q Consensus 428 ~~~~~---~~~~~~~~~~~~~~~~~ 449 (503)
+++|+ ++|+|.+..++...+..
T Consensus 387 ~~~~~~~~~~~~~~~~~p~~~~~~~ 411 (461)
T PRK10746 387 RAHKAAIASHPFRSILFPWANYLTM 411 (461)
T ss_pred HhccccccCCCCcCCCccHHHHHHH
Confidence 88764 56788887777655443
No 6
>PRK11387 S-methylmethionine transporter; Provisional
Probab=100.00 E-value=1.4e-45 Score=383.58 Aligned_cols=382 Identities=20% Similarity=0.377 Sum_probs=308.3
Q ss_pred cccccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcCh-HHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHH
Q 010690 45 QKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGP-ALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYIC 123 (503)
Q Consensus 45 ~~l~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~-~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~ 123 (503)
++++|+++.+++.+++++.++|+|+|..++.. .+.+|| +.+++|++++++.++.+++++|+++++|++||.|.|.++.
T Consensus 10 ~~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~-~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~~ 88 (471)
T PRK11387 10 GQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYI-ISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAARY 88 (471)
T ss_pred hhhhhcCcHHHHHHHHHHhhhhhHHHHHHHHH-HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHh
Confidence 35899999999999999999999999999985 567787 5899999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhH
Q 010690 124 VGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKES 203 (503)
Q Consensus 124 lg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~ 203 (503)
+||.+||+.+|.+++++....+......+.+++.++. ..|.+ ...+++.++++.+|+.|+|..
T Consensus 89 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p---~~~~~--------------~~~~~~~~~~~~in~~gvk~~ 151 (471)
T PRK11387 89 LGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFP---QVPVW--------------PWCLLFCALIFGLNVVSTRFF 151 (471)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---cCcHH--------------HHHHHHHHHHHHHHHHhHHHH
Confidence 9999999999999999988776555544444433221 01111 123455567889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc------cc----CCCCCCCCCCCCCchhhhHHHHHHHHHHhhhchHHHhhhhh
Q 010690 204 TIAQAIVTTANVLAMLFVIIAGSYLGF------KT----GWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAE 273 (503)
Q Consensus 204 ~~~~~~~~~~~~~~~l~~~i~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 273 (503)
.+++.+++.++++.++.+++.++.... .. .+.+++ ..++.|++..+++.++...+|+|.|+|..++++|
T Consensus 152 ~~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~ 230 (471)
T PRK11387 152 AEGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLT-AEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAG 230 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccC-CCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 999999999998888777666543211 00 011111 2234455556788888889999999999999999
Q ss_pred hhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCC-CCCchHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhhc
Q 010690 274 EVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSIL 352 (503)
Q Consensus 274 e~k~P~k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~ 352 (503)
|+|||+|++||++..+...+.++|++..+++....|.++.. .+.|..+++++.+++++..++.++++++.+++.++.++
T Consensus 231 E~knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~~~~~ 310 (471)
T PRK11387 231 ETENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVGIPYAADIFNFVILTAILSAANSGLY 310 (471)
T ss_pred HhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888876653 45799999999888999999999999999999999999
Q ss_pred chhHHHHHHHhCCCCchhhccccCCCCCchHHHHHHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010690 353 PQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM------DVSALAGMVSVGTLLAFTMVAISVLIL 426 (503)
Q Consensus 353 ~~sr~l~~la~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~------~~~~l~~i~~~~~li~~~~~~~~~l~~ 426 (503)
..+|+++++||||.+|++|+|.|++ ++|++++++..++..+..+.. .++.+.++.+...++.|++.+++.+++
T Consensus 311 ~~sR~l~a~ardg~lP~~f~~~~~~-~~P~~Ail~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~li~y~~~~~~~i~l 389 (471)
T PRK11387 311 ASGRMLWSLSNEGTLPACFARLTKR-GIPLTALSVSMLGGLLALFSSVVAPDTVFVALSAISGFAVVAVWLSICASHFMF 389 (471)
T ss_pred HhhHHHHHHHhcCCcCHHHHHhCCC-CCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999965 999999988766554332221 134567788888899999999999988
Q ss_pred hcCCCC------CcccCCCcchhhhh
Q 010690 427 RYVPPD------EVPVPSTLQSSIDS 446 (503)
Q Consensus 427 ~~~~~~------~~~~~~~~~~~~~~ 446 (503)
|+++++ ++|+|.+..+....
T Consensus 390 r~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (471)
T PRK11387 390 RRRHLRDGKALSELAYRAPWYPLTPI 415 (471)
T ss_pred HHHHHhcCCCCCCCCccCCCccHHHH
Confidence 887643 35677766544433
No 7
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=100.00 E-value=1.8e-45 Score=380.70 Aligned_cols=389 Identities=24% Similarity=0.344 Sum_probs=313.4
Q ss_pred cccccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHH
Q 010690 45 QKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYIC 123 (503)
Q Consensus 45 ~~l~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~-~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~ 123 (503)
++++|+++.+++++++++.++|+|++..++.++...|++. .+++|++++++.++.+++++|+++++|++||.|.|.++.
T Consensus 4 ~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y~~~~ 83 (445)
T PRK11357 4 QELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKNA 83 (445)
T ss_pred ccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeHHHh
Confidence 4589999999999999999999999999988655556665 788999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhh
Q 010690 124 VGEGVAWLIGWALIL-EYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKE 202 (503)
Q Consensus 124 lg~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~ 202 (503)
+||.+|++.+|..++ ......+.++...++++...++ +.......++++++.+++.+|..|+|.
T Consensus 84 ~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~---------------~~~~~~~~~~~~~~~~~~~ln~~gv~~ 148 (445)
T PRK11357 84 GSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTP---------------IDPLLGKFIAAGLIIAFMLLHLRSVEG 148 (445)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------------CchHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 999999999997553 3444455566666666554321 112222334666677788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCchhhhHHHHHHHHHHhhhchHHHhhhhhhhcCCCCCc
Q 010690 203 STIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDL 282 (503)
Q Consensus 203 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~k~P~k~i 282 (503)
..|+|.+++.++++.++++++.++.....+++.............+.+++.++...+|+|.|+|..++++||+|||+|++
T Consensus 149 ~~~v~~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~i 228 (445)
T PRK11357 149 GAAFQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKTM 228 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccc
Confidence 99999999999998877776665542222222111100000011245677888889999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccCCCC-CCCCchHHHHHHc--chhHHHHHHHHHHHHHHHHHHHhhhcchhHHHH
Q 010690 283 PLGIGTALSICCALYMLVSIVIVGLVPYYEM-DPDTPISSAFASH--GMHWASYVITIGAVTALCSTLMGSILPQPRILM 359 (503)
Q Consensus 283 p~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~-~~~~p~~~~~~~~--~~~~~~~l~~~~~~~~~~~s~~~~~~~~sr~l~ 359 (503)
||++..+..++.++|++..+......|.+++ +.+.|..++++.. .+++.+.++.+..+++.+++.++..++.+|+++
T Consensus 229 P~Ai~~~~~i~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~ 308 (445)
T PRK11357 229 PRALIGSCLLVLVLYTLLALVISGLMPFDKLANSETPISDALTWIPALGSTAGIFVAITAMIVILGSLSSCVMYQPRLEY 308 (445)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCchHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 9999999999999999999988888886664 3456887777763 456777788888888999999999999999999
Q ss_pred HHHhCCCCchhhccccCCCCCchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCCC
Q 010690 360 AMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPDEVPVPST 439 (503)
Q Consensus 360 ~la~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~i~~~~~li~~~~~~~~~l~~~~~~~~~~~~~~~ 439 (503)
+++|||.+|++|+|.|+|+++|++++++.++++.++.+..+++.+.++.+....+.|.+...+.+++|++++.++|+|.|
T Consensus 309 a~ardg~lp~~~~~v~~~~~tP~~a~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~i~lr~~~~~~~~~k~p 388 (445)
T PRK11357 309 AMAKDNLFFKCFGHVHPKYNTPDVSIILQGALGIFFIFVSDLTSLLGYFTLVMCFKNTLTFGSIIWCRKRDDYKPLWRTP 388 (445)
T ss_pred HHHhcCCchHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHheeecCCCCCCCcccC
Confidence 99999999999999999999999999999999988888889999999989889999999888888888887777888887
Q ss_pred cchhhhhhh
Q 010690 440 LQSSIDSVS 448 (503)
Q Consensus 440 ~~~~~~~~~ 448 (503)
..+....+.
T Consensus 389 ~~~~~~~~~ 397 (445)
T PRK11357 389 AFGLMTTLA 397 (445)
T ss_pred CchHHHHHH
Confidence 765544433
No 8
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=8.9e-46 Score=367.51 Aligned_cols=386 Identities=24% Similarity=0.366 Sum_probs=338.2
Q ss_pred ccccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHh
Q 010690 46 KLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICV 124 (503)
Q Consensus 46 ~l~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~-~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~l 124 (503)
++||+++.++..++++|+.+|+|.|.+++. ++..+||+ +++++.+++++..++..+..||+..+|.+|+...|.+|..
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~-~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfv 119 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGK-ALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFV 119 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecch-hhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhc
Confidence 599999999999999999999999999998 67899997 9999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHH
Q 010690 125 GEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKEST 204 (503)
Q Consensus 125 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~ 204 (503)
+|.+||..+|.||+.|.+..++...+.+..++.++... .|.+. +..++.+++.++|+.|+|..+
T Consensus 120 dpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~--v~~~~--------------w~~iF~~~i~~iN~~~Vk~fG 183 (541)
T COG0833 120 DPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDT--VPPWI--------------WIAIFLVLIFLLNLFGVKGFG 183 (541)
T ss_pred CchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCC--CChHH--------------HHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999888888776322 23322 367888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCC------CCCCCCCCCCCchhhhHHHHHHHHHHhhhchHHHhhhhhhhcCC
Q 010690 205 IAQAIVTTANVLAMLFVIIAGSYLGFKTGW------SGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNP 278 (503)
Q Consensus 205 ~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~k~P 278 (503)
-.+.++..+|++.++.+++.++...+-... ..+...++.+++++.+++..+..+.|+|.|.|.....++|.+||
T Consensus 184 E~Efw~s~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP 263 (541)
T COG0833 184 ETEFWFSSIKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENP 263 (541)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCc
Confidence 999999999999999998888765432221 11222345567889999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCC---------CCCchHHHHHHcchhHHHHHHHHHHHHHHHHHHHh
Q 010690 279 QRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD---------PDTPISSAFASHGMHWASYVITIGAVTALCSTLMG 349 (503)
Q Consensus 279 ~k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~~---------~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~ 349 (503)
+|++||++.-.+....++|++..+++...+|+++.+ ..+|+..++++.+.+.++.+++++++.+.++++++
T Consensus 264 ~K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS 343 (541)
T COG0833 264 RKSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANS 343 (541)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999987621 34699999999999999999999999999999999
Q ss_pred hhcchhHHHHHHHhCCCCchhhccccCCCCCchHHHHHHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHHHHHH
Q 010690 350 SILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM------DVSALAGMVSVGTLLAFTMVAISV 423 (503)
Q Consensus 350 ~~~~~sr~l~~la~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~------~~~~l~~i~~~~~li~~~~~~~~~ 423 (503)
.+|.++|++|+||+||..||+|+|+||+ |+|++|++++.+.+.+-.+-. .++++.++.++..++++..++++.
T Consensus 344 ~lYasSR~L~sLA~~g~APk~f~~~~r~-GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~~i~W~~I~~sh 422 (541)
T COG0833 344 GLYASSRMLYSLAKQGKAPKIFAKVDRR-GVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSGFIAWGSICLSH 422 (541)
T ss_pred cchHHHHHHHHHHhcCCCchHHHhhCCC-CCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 999999998888775422221 367899999999999999999999
Q ss_pred HHHhcCC------CCCcccCCCcchhhhhhhh
Q 010690 424 LILRYVP------PDEVPVPSTLQSSIDSVSL 449 (503)
Q Consensus 424 l~~~~~~------~~~~~~~~~~~~~~~~~~~ 449 (503)
+++|+.. .++.|+|.|..++...+..
T Consensus 423 irFR~A~~~QG~s~~~L~yks~~~p~g~~~~~ 454 (541)
T COG0833 423 IRFRRAMKAQGRSLDELPYKSPFGPYGPIYGL 454 (541)
T ss_pred HHHHHHHHHcCCChhhcCccCCCccHHHHHHH
Confidence 9998732 3578899999887554433
No 9
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=100.00 E-value=1.1e-44 Score=375.45 Aligned_cols=384 Identities=22% Similarity=0.342 Sum_probs=314.1
Q ss_pred ccccccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHH
Q 010690 44 HQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYIC 123 (503)
Q Consensus 44 ~~~l~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~ 123 (503)
+.+++|+++.++..++++++++|+|+|..++.. .+.+|+..+++|++++++.++.+++++|+++++|++||.|.|.++.
T Consensus 7 ~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~-~~~~G~~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~ 85 (452)
T TIGR01773 7 GLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSA-IASAGPAALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDA 85 (452)
T ss_pred hHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHH-HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 344889999999999999999999999999984 5778898889999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhH
Q 010690 124 VGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKES 203 (503)
Q Consensus 124 lg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~ 203 (503)
+||.+|++.+|.+++++....+......+.++..++.. .|.+ .++++++++.+.+|+.|+|..
T Consensus 86 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~--------------~~~~~~~~~~~~~n~~gv~~~ 148 (452)
T TIGR01773 86 IGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPD---IPLW--------------LFSLILTIVLTLTNLYSVKSY 148 (452)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---CcHH--------------HHHHHHHHHHHHHHHHhcchh
Confidence 99999999999999999988887777777777655421 1222 236777777899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc--cc-----CCCCCCCCCCCCCchhhhHHHHHHHHHHhhhchHHHhhhhhhhc
Q 010690 204 TIAQAIVTTANVLAMLFVIIAGSYLGF--KT-----GWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVK 276 (503)
Q Consensus 204 ~~~~~~~~~~~~~~~l~~~i~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~k 276 (503)
.+++.+++.++++.++.+++.++.... .+ ++.++.+.+++.|+++.+++.++...+|+|.|+|..++++||+|
T Consensus 149 ~~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k 228 (452)
T TIGR01773 149 GEFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESS 228 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhc
Confidence 999999999998888777665543211 11 11222222334466777789999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCC--CCCchHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhhcch
Q 010690 277 NPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD--PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQ 354 (503)
Q Consensus 277 ~P~k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~ 354 (503)
||+|++||++..+...+.++|++..+......|+++.+ ...|...+.+..++++...++.++++++.+++.++.++.+
T Consensus 229 ~P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~~~~~~~~~~~~~~ 308 (452)
T TIGR01773 229 NPIKSITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELLGIPHAKLIMDFVVLTAVLSCLNSALYTT 308 (452)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888777777755432 2348888887778888889999999999999999999999
Q ss_pred hHHHHHHHhCCCCchhhccccCCCCCchHHHHHHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010690 355 PRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM------DVSALAGMVSVGTLLAFTMVAISVLILRY 428 (503)
Q Consensus 355 sr~l~~la~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~------~~~~l~~i~~~~~li~~~~~~~~~l~~~~ 428 (503)
+|+++++||||.+|++|+|+||+ ++|++++++.++++.+..+.. .++.+.++.+...++.|.+++.+.+++|+
T Consensus 309 sR~~~a~ardg~lP~~~~~v~~~-~~P~~Ail~~~~~~~~~~l~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~i~~r~ 387 (452)
T TIGR01773 309 SRMLYSLAERGDAPRVFMKLNKK-GVPVQAVLASTFFSFLTVVVNYFAPDKVFLFLVNSSGAIALLVYLVIAVSQLRMRK 387 (452)
T ss_pred HHHHHHHHhCCCcCHHHHhhCCC-CCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999965 999999999988877655442 13456677777888999999999999888
Q ss_pred CCCCC-c--ccCCCcchhhhh
Q 010690 429 VPPDE-V--PVPSTLQSSIDS 446 (503)
Q Consensus 429 ~~~~~-~--~~~~~~~~~~~~ 446 (503)
++|+. + +++.+..++...
T Consensus 388 ~~~~~~~~~~~~~~~~p~~~~ 408 (452)
T TIGR01773 388 KLKANGEAIKIRMWLYPWLTW 408 (452)
T ss_pred HHHhcCCCCCccCCCccHHHH
Confidence 76542 3 355554555443
No 10
>PRK10836 lysine transporter; Provisional
Probab=100.00 E-value=2.1e-44 Score=376.16 Aligned_cols=383 Identities=22% Similarity=0.344 Sum_probs=305.3
Q ss_pred cccccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHH
Q 010690 45 QKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYIC 123 (503)
Q Consensus 45 ~~l~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~-~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~ 123 (503)
++++|+++.+++.++++++++|+|+|..++.. .+.+||. .+++|++++++.++.+++++|+++++|++||.|.|.++.
T Consensus 11 ~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~-~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~~~ 89 (489)
T PRK10836 11 PGLRRELKARHLTMIAIGGSIGTGLFVASGAT-ISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNY 89 (489)
T ss_pred ccccccCcHHHHHHHHHhhhhhhhhhHhhhHH-HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Confidence 45899999999999999999999999999985 5778886 899999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhH
Q 010690 124 VGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKES 203 (503)
Q Consensus 124 lg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~ 203 (503)
+|+.+|++.||.+++.+....+.........+..++. ..+.+ ..+.+++++++.+|+.|+|..
T Consensus 90 ~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~---------------~~~~~--~~~~~~~~~~~~lN~~gv~~~ 152 (489)
T PRK10836 90 VEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFP---------------DTPGW--IWSALFLGVIFLLNYISVRGF 152 (489)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC---------------CCchH--HHHHHHHHHHHHHHHHcchhh
Confidence 9999999999999987766554333322222322221 11111 124556667789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc---cc----CCCCCCCCCCCCCchhhhHHHHHHHHHHhhhchHHHhhhhhhhc
Q 010690 204 TIAQAIVTTANVLAMLFVIIAGSYLGF---KT----GWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVK 276 (503)
Q Consensus 204 ~~~~~~~~~~~~~~~l~~~i~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~k 276 (503)
++++.+++.+++..++.+++.++.... ++ .+.++..+.+..+.++.+++......+|+|.|+|..++++||+|
T Consensus 153 ~~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~k 232 (489)
T PRK10836 153 GEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESE 232 (489)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhc
Confidence 999999999998887776655443211 11 11122211111234556666666667899999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCC---------CCCchHHHHHHcchhHHHHHHHHHHHHHHHHHH
Q 010690 277 NPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD---------PDTPISSAFASHGMHWASYVITIGAVTALCSTL 347 (503)
Q Consensus 277 ~P~k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~~---------~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~s~ 347 (503)
||+|++||++..+...+.++|++..+.+....|+++.+ ..+|+..++.+.+.++...++.++++++.+++.
T Consensus 233 nP~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~~~g~~~~~~ii~~~il~a~~~~~ 312 (489)
T PRK10836 233 DPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVMNAVILTAVLSAG 312 (489)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988888865321 236888888888878888999999999999999
Q ss_pred HhhhcchhHHHHHHHhCCCCchhhccccCCCCCchHHHHHHHHHHHHHHHhhC------HHHHHHHHHHHHHHHHHHHHH
Q 010690 348 MGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMD------VSALAGMVSVGTLLAFTMVAI 421 (503)
Q Consensus 348 ~~~~~~~sr~l~~la~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~------~~~l~~i~~~~~li~~~~~~~ 421 (503)
++.++.++|++|++||||.+|++|+|.||+ ++|++|++++++++.+..+... ++.+.++.+...++.|.+.++
T Consensus 313 n~~~~~~sR~l~a~Ardg~lP~~~~kv~~~-~~P~~All~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~ 391 (489)
T PRK10836 313 NSGMYASTRMLYTLACDGKAPRIFAKLSRG-GVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLGIAI 391 (489)
T ss_pred HHHHHHHHHHHHHHHcCCCcCHHHHhhCCC-CCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999965 9999999999998876554422 345778888899999999999
Q ss_pred HHHHHhcC----CCC--CcccCCCcchhhhh
Q 010690 422 SVLILRYV----PPD--EVPVPSTLQSSIDS 446 (503)
Q Consensus 422 ~~l~~~~~----~~~--~~~~~~~~~~~~~~ 446 (503)
+.+++|++ +|+ ++|+|.|..+....
T Consensus 392 a~l~~R~~~~~~~~~~~~~p~~~p~~p~~~~ 422 (489)
T PRK10836 392 SHYRFRRGYVLQGHDLNDLPYRSGFFPLGPI 422 (489)
T ss_pred HHHHHHHHHHhcCCCcCCCCCcCCCccHHHH
Confidence 99998884 333 46888887665444
No 11
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=4.3e-45 Score=355.43 Aligned_cols=388 Identities=25% Similarity=0.417 Sum_probs=344.8
Q ss_pred cccccccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHH
Q 010690 43 SHQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYI 122 (503)
Q Consensus 43 ~~~~l~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~ 122 (503)
++++++|.++.++.-++++|+.+|+|.|.+++. +++.+||+.++++.++|++.....-++.|+...-|++|+..+|+++
T Consensus 7 ~~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~-~I~~AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~ 85 (462)
T COG1113 7 EEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGS-AIAMAGPSVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARK 85 (462)
T ss_pred cchhhhhhhHHHHHHHHHHhhhhhhhhhcccch-hhhhhCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHH
Confidence 345699999999999999999999999999998 6899999999999999999999999999999999999999999999
Q ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhh
Q 010690 123 CVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKE 202 (503)
Q Consensus 123 ~lg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~ 202 (503)
.+||+.||+.+|.||+.++..+.+...+.+.+++.++.. .|.|.. +++.++++..+|+.++|.
T Consensus 86 ~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~---vP~Wv~--------------al~~~~l~~~~NL~sVk~ 148 (462)
T COG1113 86 YLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPD---VPQWVF--------------ALAAVVLLLAVNLISVKV 148 (462)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CcHHHH--------------HHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999853 466653 788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc---c-----CCCCCCCCCCCCCchhhhHHHHHHHHHHhhhchHHHhhhhhh
Q 010690 203 STIAQAIVTTANVLAMLFVIIAGSYLGFK---T-----GWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEE 274 (503)
Q Consensus 203 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e 274 (503)
.+..+..+..+|++.++.+++++....+. + +.++..++.+++|+|+.+++.++...+|+|.|.|.+...++|
T Consensus 149 FGE~EfWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~E 228 (462)
T COG1113 149 FGELEFWFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAE 228 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 99999999999999999988887754321 1 233444567889999999999999999999999999999999
Q ss_pred hcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC-CCchHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 010690 275 VKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDP-DTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILP 353 (503)
Q Consensus 275 ~k~P~k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~ 353 (503)
.|||+|.+||++........++|+...+++....|+++.+. .+|+.+.++..+-|+...+++++++.+.++++++.+|+
T Consensus 229 t~dP~k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglys 308 (462)
T COG1113 229 AKDPEKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYS 308 (462)
T ss_pred hcChhhHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCcccccceeEEEeechhhcccccccc
Confidence 99999999999999999999999999999999999988654 57999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhCCCCchhhccccCCCCCchHHHHHHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010690 354 QPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM------DVSALAGMVSVGTLLAFTMVAISVLILR 427 (503)
Q Consensus 354 ~sr~l~~la~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~------~~~~l~~i~~~~~li~~~~~~~~~l~~~ 427 (503)
.+|++|.+|+||..||.|+|.+++ ++|+++++++.+...+-..+. .+..+++..+.+.+..|+++.++.+++|
T Consensus 309 tsRmL~~la~~g~APk~~~klsk~-gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~l~vW~~I~~s~l~~r 387 (462)
T COG1113 309 TSRMLYSLAKQGDAPKAFAKLSKR-GVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGLLFVWLMILLSQLKLR 387 (462)
T ss_pred cchHHHHHhhcCcccHhHhhcccc-CCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988 999999998887765544332 3567888999999999999999999999
Q ss_pred cCCCC---CcccCCCcchhhhhhhh
Q 010690 428 YVPPD---EVPVPSTLQSSIDSVSL 449 (503)
Q Consensus 428 ~~~~~---~~~~~~~~~~~~~~~~~ 449 (503)
+++++ +.++|.|..+....+..
T Consensus 388 k~~~~~~~~~~fkm~~~p~~~~l~l 412 (462)
T COG1113 388 KAKPAEGKKLKFKMPLYPFTNYLTL 412 (462)
T ss_pred hcchhcccCcccccccccHHHHHHH
Confidence 85443 34577666555444333
No 12
>TIGR00909 2A0306 amino acid transporter.
Probab=100.00 E-value=6e-44 Score=368.19 Aligned_cols=390 Identities=37% Similarity=0.622 Sum_probs=326.8
Q ss_pred cccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHhcc
Q 010690 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGE 126 (503)
Q Consensus 47 l~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~lg~ 126 (503)
++|++|.++++++.++.++|+|++..++.. ...+|+..++++++++++.++.+++++|+++++|++||.|.|.++.+||
T Consensus 1 l~r~l~~~~~~~~~i~~~ig~gi~~~~~~~-~~~~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~ 79 (429)
T TIGR00909 1 LSRELGLFDLTMLGIGAMIGTGIFVVTGIA-AGKAGPAVILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMGE 79 (429)
T ss_pred CCccccHHHHHHHHHhhhhcchHHHhHHHH-HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhCc
Confidence 478999999999999999999999999885 4667899899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHHH
Q 010690 127 GVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSA-DSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (503)
Q Consensus 127 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~~ 205 (503)
+.|++.+|.+++.+....+......++++..++... .+.|.+.. ..++........+++++++.+.+|+.|+|...|
T Consensus 80 ~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~ 157 (429)
T TIGR00909 80 LTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLT--AKPGNGGVFNLPALLIVLFLTYILYLGAKESGK 157 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhh--cCCcccccccHHHHHHHHHHHHHHHhCcHHHHH
Confidence 999999999999999888888888888887776421 11222110 001111112234567888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCchhhhHHHHHHHHHHhhhchHHHhhhhhhhcCCCCCchhH
Q 010690 206 AQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLG 285 (503)
Q Consensus 206 ~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~k~P~k~ip~~ 285 (503)
++.++..++++.++++++.+......+.+. ++.+.++.++..++...+|+|.|+|...++++|+|||+|++||+
T Consensus 158 ~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~a 231 (429)
T TIGR00909 158 VNDILVVLKVAALLLFAALGAIHFASNNYT------PFMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKA 231 (429)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhhCcHHhcC------CCCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHH
Confidence 999999999988877666555432222222 12244566788888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCC-CCCCchHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhC
Q 010690 286 IGTALSICCALYMLVSIVIVGLVPYYEM-DPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARD 364 (503)
Q Consensus 286 ~~~~~~~~~v~y~l~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~sr~l~~la~d 364 (503)
+..+..++.++|++..+......|.++. +.+.|...+..+..+++...++.+.++++.+++.++.++..+|++++++||
T Consensus 232 i~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~d 311 (429)
T TIGR00909 232 IILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRD 311 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999988888776654 345688788888888999999999999999999999999999999999999
Q ss_pred CCCchhhccccCCCCCchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CcccCCCcchh
Q 010690 365 GLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPD-EVPVPSTLQSS 443 (503)
Q Consensus 365 ~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~i~~~~~li~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~ 443 (503)
|.+|++|+|+|+|+++|++++++.++++.++.....++.+.++.+...++.|.+.+.+.+++|+|+|+ ++|+|.+..+.
T Consensus 312 g~lP~~~~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~~~lr~~~~~~~~~~~~~~~~~ 391 (429)
T TIGR00909 312 GLLPGSLSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGLAELTSIGTLIAFAAVNVAVIILRRRRPDIQRAFRCPLVPV 391 (429)
T ss_pred CCCcHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcchH
Confidence 99999999999888999999999999988877777889999999999999999999999999887766 56677776554
Q ss_pred hh
Q 010690 444 ID 445 (503)
Q Consensus 444 ~~ 445 (503)
..
T Consensus 392 ~~ 393 (429)
T TIGR00909 392 LP 393 (429)
T ss_pred HH
Confidence 43
No 13
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=100.00 E-value=5.7e-44 Score=371.00 Aligned_cols=384 Identities=22% Similarity=0.362 Sum_probs=317.0
Q ss_pred ccccccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHH
Q 010690 44 HQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYIC 123 (503)
Q Consensus 44 ~~~l~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~ 123 (503)
+++++|+++.+++.++++++++|+|+|..++.. .+.+||+.+++|++++++.++.+.+++|+++..|..|+.|.|.++.
T Consensus 15 ~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~-~~~aGp~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~~ 93 (469)
T PRK11049 15 EQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKT-ISLAGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDL 93 (469)
T ss_pred chhhhccCcHHHHHHHHHhhHHHhHHHHHhhHH-HhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 455999999999999999999999999999985 5778898899999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhH
Q 010690 124 VGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKES 203 (503)
Q Consensus 124 lg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~ 203 (503)
+||..||+.+|.+++.+.....+.+...+.++..++.. .+.+ .++.+++++++++|+.|.|..
T Consensus 94 ~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~---~~~~--------------~~~~~~~~~~~~iN~~g~~~~ 156 (469)
T PRK11049 94 LGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPD---LSDW--------------VASLAVVLLLLSLNLATVKMF 156 (469)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CcHH--------------HHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999777666666666666655431 1111 125566777889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc------cc---CCCCCCCCCCCCCchhhhHHHHHHHHHHhhhchHHHhhhhhh
Q 010690 204 TIAQAIVTTANVLAMLFVIIAGSYLGF------KT---GWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEE 274 (503)
Q Consensus 204 ~~~~~~~~~~~~~~~l~~~i~~~~~~~------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e 274 (503)
.++|.+.+.++++.++.+++.++.... .. .+.+..+.+++.|+++.+++.++...+|+|.|+|..++++||
T Consensus 157 ~~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E 236 (469)
T PRK11049 157 GEMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAE 236 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 999999999999888888777665321 11 111222233445677778899999999999999999999999
Q ss_pred hcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCC-CCCchHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 010690 275 VKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILP 353 (503)
Q Consensus 275 ~k~P~k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~ 353 (503)
+|||+|++||++..+.+.+.++|++.........|+++.. .+.|..+.+.+.++++...++.+.++++.+++.++.++.
T Consensus 237 ~knP~r~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~ 316 (469)
T PRK11049 237 TKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFS 316 (469)
T ss_pred hcCHhhHHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888889999999998888888877663 457888888888889999999999999999999999999
Q ss_pred hhHHHHHHHhCCCCchhhccccCCCCCchHHHHHHHHHHHHH---HHh-h----CHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010690 354 QPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAAL---AFF-M----DVSALAGMVSVGTLLAFTMVAISVLI 425 (503)
Q Consensus 354 ~sr~l~~la~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~---~~~-~----~~~~l~~i~~~~~li~~~~~~~~~l~ 425 (503)
.+|++++++|||.+|++|+|.||+ ++|++++++.+++..+. ... . .++.+.++.+...++.|.+.+.++++
T Consensus 317 ~sR~l~a~ardg~lP~~~~kv~~~-~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~ 395 (469)
T PRK11049 317 TSRMLFGLAQEGVAPKAFAKLSKR-AVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFVWTIILCSYLV 395 (469)
T ss_pred HHHHHHHHHhCCCCCHHHHhhCCC-CCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999977 99999999887765431 121 1 24567778888888999999999999
Q ss_pred HhcCCCCC---cccCCCcchhhhh
Q 010690 426 LRYVPPDE---VPVPSTLQSSIDS 446 (503)
Q Consensus 426 ~~~~~~~~---~~~~~~~~~~~~~ 446 (503)
+|+++|+. +|+|.+..+....
T Consensus 396 lr~~~p~~~~~~pf~~p~~~~~~~ 419 (469)
T PRK11049 396 YRKQRPHLHEKSIYKMPLGKLMCW 419 (469)
T ss_pred HHHhhhhcCCCCCccCcCcchHHH
Confidence 99887653 4677776554443
No 14
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-46 Score=384.04 Aligned_cols=396 Identities=38% Similarity=0.634 Sum_probs=334.2
Q ss_pred cccccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhhhhCCC-CCccccchHHH
Q 010690 45 QKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPS-AGSAYHYSYIC 123 (503)
Q Consensus 45 ~~l~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~~~~a~~~~el~~~~p~-~Gg~~~~~~~~ 123 (503)
++++|+++.+|..++++|..+|+|.+.++++++...+|++.++.++++++..++++++++|++.++|. +||.|.|.+|.
T Consensus 26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~ 105 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRF 105 (554)
T ss_pred chhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeeee
Confidence 57999999999999999999999999999998777777789999999999999999999999999999 59999999999
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHh-hhhhh
Q 010690 124 VGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLC-VGIKE 202 (503)
Q Consensus 124 lg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~-~g~k~ 202 (503)
+|+.+||..+|.+++.|++.+++.+.+.+.++..+.+ .. .........+...|..+.+++++++.+..+-. .+.|.
T Consensus 106 i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~-~~--~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef 182 (554)
T KOG1286|consen 106 VGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTG-AS--LIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEF 182 (554)
T ss_pred eCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-cc--cccccccCCCCCccHHHHHHHHHHHHHHHHhhccceee
Confidence 9999999999999999999999999999999998861 11 11111122333445555555555555555555 78888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC---CCCCCCCCCchhhhHHHHHHHHHHhhhchHHHhhhhhhhcCCC
Q 010690 203 STIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSG---YELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQ 279 (503)
Q Consensus 203 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~k~P~ 279 (503)
...+..+++.+.++++.+++..+.....+.+|.. +.++.++.|.++.|++.++..++|+|.|+|..+..+||.|||+
T Consensus 183 ~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~ 262 (554)
T KOG1286|consen 183 SLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNPR 262 (554)
T ss_pred hHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCCc
Confidence 8888888888888888777777776655445543 3445667888899999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhcccCCC--CCCCCchHHHHH----HcchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 010690 280 RDLPLGIGTALSICCALYMLVSIVIVGLVPYYE--MDPDTPISSAFA----SHGMHWASYVITIGAVTALCSTLMGSILP 353 (503)
Q Consensus 280 k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~--~~~~~p~~~~~~----~~~~~~~~~l~~~~~~~~~~~s~~~~~~~ 353 (503)
|++|+++..++..+.++|++..+.+...+|+++ ++++.+..+.+. ..+-+.+..+++++++++..+++++.++.
T Consensus 263 k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~ 342 (554)
T KOG1286|consen 263 KAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYA 342 (554)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999999988 776665555554 33334455599999999999999999999
Q ss_pred hhHHHHHHHhCCCCchhhccccCCCCCchHHHHHHHHHHHHHHHhhCH------HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010690 354 QPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDV------SALAGMVSVGTLLAFTMVAISVLILR 427 (503)
Q Consensus 354 ~sr~l~~la~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~------~~l~~i~~~~~li~~~~~~~~~l~~~ 427 (503)
++|.+++||+||.+||+|+++|++ ++|+.++++.++.+.+..+..+. +++.+++++..+++|.+++++.+++|
T Consensus 343 ~sR~l~amA~~G~~Pk~f~~v~~~-g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~tl~~w~~i~~~~i~~R 421 (554)
T KOG1286|consen 343 GSRVLYALAKDGLAPKFFARVDRR-GVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIGTLFAWTLVALSHLRFR 421 (554)
T ss_pred hHHHHHHHHhcCCcchHHhhcCCC-CCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHHHHHHHHHHHHHHeeee
Confidence 999999999999999999999999 99999999999999887777665 99999999999999999999999999
Q ss_pred cCC------CCCcccCCCcchhh
Q 010690 428 YVP------PDEVPVPSTLQSSI 444 (503)
Q Consensus 428 ~~~------~~~~~~~~~~~~~~ 444 (503)
+.. +++.+++.+.+++-
T Consensus 422 ~a~~~q~~~~~~~~~~s~~~~~g 444 (554)
T KOG1286|consen 422 YAMKVQGRSLDELPYKSPTGPYG 444 (554)
T ss_pred ecccccCCCcccccccCCCCCch
Confidence 863 34566666544443
No 15
>PRK10580 proY putative proline-specific permease; Provisional
Probab=100.00 E-value=9.5e-44 Score=368.62 Aligned_cols=386 Identities=21% Similarity=0.361 Sum_probs=310.4
Q ss_pred cccccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHh
Q 010690 45 QKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICV 124 (503)
Q Consensus 45 ~~l~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~l 124 (503)
++++|+++.++.++++++.++|+|+|..++. +.+.+||.+++++++++++.++.+++++|+++++|.+||.|.|.++.+
T Consensus 5 ~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~-~~~~aG~~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~~~ 83 (457)
T PRK10580 5 NKLKRGLSTRHIRFMALGSAIGTGLFYGSAD-AIKMAGPSVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQENL 83 (457)
T ss_pred ccccccCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHc
Confidence 4588999999999999999999999999998 467889999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHH
Q 010690 125 GEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKEST 204 (503)
Q Consensus 125 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~ 204 (503)
||.+|++.+|.+++.+.........+.+.++..++.. .|.+ ...++++++.+.+|+.|+|...
T Consensus 84 G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--------------~~~~~~~~l~~~ln~~gv~~~~ 146 (457)
T PRK10580 84 GPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPT---VPHW--------------IWVLSVVLIICAVNLMSVKVFG 146 (457)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CChH--------------HHHHHHHHHHHHHHHccchhHH
Confidence 9999999999999988776666666666666544321 1111 1245566778899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---hccc--CC---CCCCCCCCCCCchhhhHHHHHHHHHHhhhchHHHhhhhhhhc
Q 010690 205 IAQAIVTTANVLAMLFVIIAGSYL---GFKT--GW---SGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVK 276 (503)
Q Consensus 205 ~~~~~~~~~~~~~~l~~~i~~~~~---~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~k 276 (503)
+++.+++.++++.++++++.++.. ...+ .. .....+++..++++.+++.++...+|+|.|+|..++++||.|
T Consensus 147 ~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~k 226 (457)
T PRK10580 147 ELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAK 226 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhc
Confidence 999999999988877766554321 1111 01 111112233466777888899999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCC-CCCchHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhhcchh
Q 010690 277 NPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQP 355 (503)
Q Consensus 277 ~P~k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~s 355 (503)
||+|++||++..+.+...++|++..+.+....|.++.. .+.|....++..+.++...++.+.++.+.+++.+++++..+
T Consensus 227 nP~k~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s 306 (457)
T PRK10580 227 DPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGITFAASILNFVVLTASLSAINSDVFGVG 306 (457)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHheecccCCCCccCChHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888877876654 34688777777777888888999999999999999999999
Q ss_pred HHHHHHHhCCCCchhhccccCCCCCchHHHHHHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 010690 356 RILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM------DVSALAGMVSVGTLLAFTMVAISVLILRYV 429 (503)
Q Consensus 356 r~l~~la~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~------~~~~l~~i~~~~~li~~~~~~~~~l~~~~~ 429 (503)
|+++++||||.+|++|+|+||+ ++|+++++++.++..+..+.. .++.+.++.+...++.|.+.+++.+++|++
T Consensus 307 R~~~~~ardg~lP~~~~kv~~~-~~P~~Ai~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~lr~~ 385 (457)
T PRK10580 307 RMLHGMAEQGSAPKIFSKTSRR-GIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRRR 385 (457)
T ss_pred HHHHHHHhCCCcCHHHHhhCCC-CCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999975 999999998876544322221 245688888889999999999999999877
Q ss_pred CCC----CcccCCCcchhhhhhhh
Q 010690 430 PPD----EVPVPSTLQSSIDSVSL 449 (503)
Q Consensus 430 ~~~----~~~~~~~~~~~~~~~~~ 449 (503)
+++ +++++.+.+++...+..
T Consensus 386 ~~~~~~~~~~f~~~~~~~~~~~~~ 409 (457)
T PRK10580 386 LPPEEVKALKFKVPGGVATTIGGL 409 (457)
T ss_pred HHhcCCCCCCcccCCccHHHHHHH
Confidence 432 23566665555544333
No 16
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=100.00 E-value=1e-43 Score=367.38 Aligned_cols=369 Identities=21% Similarity=0.308 Sum_probs=301.8
Q ss_pred ccccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHhc
Q 010690 46 KLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVG 125 (503)
Q Consensus 46 ~l~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~lg 125 (503)
+++|+++.+++++++++.++|+|+|..++..+ .. |+..+++|+++++.+++.+++++|+++++|++||.|.|.++.+|
T Consensus 5 ~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a-~~-g~~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~~g 82 (445)
T PRK10644 5 ADAHKVGLIPVTLMVAGNIMGSGVFLLPANLA-ST-GGIAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRCFG 82 (445)
T ss_pred ccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHHcC
Confidence 36789999999999999999999999998753 43 55678999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHHH
Q 010690 126 EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (503)
Q Consensus 126 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~~ 205 (503)
|.+||+.+|.+++.+.............++...+.... .++....+.++++++++.+|..|+|...+
T Consensus 83 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~ln~~gvk~~~~ 149 (445)
T PRK10644 83 PFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK-------------DPLVLTITCVVVLWIFVLLNIVGPKMITR 149 (445)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-------------CcHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 99999999999988877665555444555554432110 12223345667777899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCchhhhHHHHHHHHHHhhhchHHHhhhhhhhcCCCCCchhH
Q 010690 206 AQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLG 285 (503)
Q Consensus 206 ~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~k~P~k~ip~~ 285 (503)
++.+++.++++.++.+++.++.....+.+....+..+ ..++.++..++...+|+|.|+|..++++||+|||+|++||+
T Consensus 150 i~~i~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPra 227 (445)
T PRK10644 150 VQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSG--LGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIA 227 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccc--cchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHH
Confidence 9999999998877777666544221111111111111 12345667777889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCC-CCCchHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhC
Q 010690 286 IGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARD 364 (503)
Q Consensus 286 ~~~~~~~~~v~y~l~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~sr~l~~la~d 364 (503)
+..+..++.++|++..++.....|++++. .+.|..++.++..+++...++.+...++.+++.+++....+|++++++||
T Consensus 228 i~~s~~i~~v~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~~a~ard 307 (445)
T PRK10644 228 TIGGVLIAAVCYVLSSTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADD 307 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHhcCCChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999888876543 46788888888888888888888889999999999999999999999999
Q ss_pred CCCchhhccccCCCCCchHHHHHHHHHHHHHHHhh-------CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 010690 365 GLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM-------DVSALAGMVSVGTLLAFTMVAISVLILRYVPPD 432 (503)
Q Consensus 365 ~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~-------~~~~l~~i~~~~~li~~~~~~~~~l~~~~~~~~ 432 (503)
|.+|++|+|+||+ ++|+++++++++++.++.+.. .++.+.++.+...++.|.+.+.+.+++|+|+++
T Consensus 308 g~lP~~~~~v~~~-~tP~~Ai~~~~~i~~l~~l~~~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~ 381 (445)
T PRK10644 308 GLFPPIFARVNKA-GTPVAGLLIVGVLMTIFQLSSISPNASKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFG 381 (445)
T ss_pred CCccHHHHhhCcC-CCCHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 9999999999975 999999999999987765442 367788888889999999999999999887654
No 17
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=100.00 E-value=9.9e-44 Score=367.51 Aligned_cols=382 Identities=24% Similarity=0.345 Sum_probs=308.1
Q ss_pred ccccccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHH
Q 010690 44 HQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYI 122 (503)
Q Consensus 44 ~~~l~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~-~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~ 122 (503)
+++++|++|.++.++++++.++| |.+...+. ....+|+. .++++++++++.++.+++++|+++++|++||.|.|.++
T Consensus 2 ~~~l~r~l~~~~~~~l~~~~~ig-g~~~~~~~-~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~~ 79 (442)
T TIGR00908 2 HRQLKKTLATWQLWGIGVGYVIS-GDYAGWNF-GLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAGGGYGFARR 79 (442)
T ss_pred CchhhccCCHHHHHHhHHHHHhh-ccchhHhh-HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45689999999999999999998 66665554 35667885 78889999999999999999999999999999999999
Q ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhh
Q 010690 123 CVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKE 202 (503)
Q Consensus 123 ~lg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~ 202 (503)
.+||..|++.+|.+++.+.+..+..+...++++..+++.. +.+ .++++++++.+.+|+.|+|.
T Consensus 80 ~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~---~~~--------------~~~~~~~~~~~~ln~~g~~~ 142 (442)
T TIGR00908 80 AFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVG---PGW--------------LAALVFYIVFIGINILGVGE 142 (442)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---chh--------------HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888888888887765321 111 23566777788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC--CCCCCCCCCCchhhhHHHHHHHHHHhhhchHHHhhhhhhhcCCCC
Q 010690 203 STIAQAIVTTANVLAMLFVIIAGSYLGFKTGWS--GYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQR 280 (503)
Q Consensus 203 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~k~P~k 280 (503)
..+++.++..++++.++++++....+.....+. .....+++.+.++.+++.++...+|+|.|+|..++++||+|||+|
T Consensus 143 ~~~i~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r 222 (442)
T TIGR00908 143 AAKLEFVVTAVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKR 222 (442)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 999999998888776554443322110000110 111122344556667888888899999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhcccCCCC-CCCCchHHHHHHcch--hHHHHHHHHHHHHHHHHHHHhhhcchhHH
Q 010690 281 DLPLGIGTALSICCALYMLVSIVIVGLVPYYEM-DPDTPISSAFASHGM--HWASYVITIGAVTALCSTLMGSILPQPRI 357 (503)
Q Consensus 281 ~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~--~~~~~l~~~~~~~~~~~s~~~~~~~~sr~ 357 (503)
++||++..+..++.++|+....+.....+.+++ +.+.|..+++++..+ ++...++.+..+++.+++.++..+..+|+
T Consensus 223 ~iprai~~s~~~~~~~~~~~~~~~~g~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~i~~~~~~~~~~s~~~~~~~~sR~ 302 (442)
T TIGR00908 223 DIPRGLIGAILTLLALAAGILVVGPGAADAKELMGSNNPLPEALESIYGGSTWMSQFVNLVGLFGLIASFHGIIYGYSRQ 302 (442)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhcCCCHHHhCCCcchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998887766655555444 345688888777633 46667778888888899999999999999
Q ss_pred HHHHHhCCCCchhhccccCCCCCchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-Cccc
Q 010690 358 LMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPD-EVPV 436 (503)
Q Consensus 358 l~~la~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~i~~~~~li~~~~~~~~~l~~~~~~~~-~~~~ 436 (503)
++++||||.+|++|+|.| |+++|+++++++++++.++.+..+.+.+..+.+...++.|.+.+.+++++|+++|+ ++|+
T Consensus 303 l~a~ardg~lP~~~~~~~-~~~~P~~Ail~~~~i~~~~~l~~~~~~l~~~~~~~~~~~y~~~~~a~i~lr~~~p~~~rp~ 381 (442)
T TIGR00908 303 IFALSRAGYLPESLSKVN-RKKAPVLAIVVPGVIGFGLSLTGQTALIILVSVFGAIISYVLSMAAHFTLRIRRPDMERPY 381 (442)
T ss_pred HHHHHhcCCccHHHHHhC-CCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc
Confidence 999999999999999999 66999999999999988877777777788888889999999999999999988876 6778
Q ss_pred CCCcchhhh
Q 010690 437 PSTLQSSID 445 (503)
Q Consensus 437 ~~~~~~~~~ 445 (503)
|.|..+...
T Consensus 382 ~~p~~~~~~ 390 (442)
T TIGR00908 382 RTPGGILTP 390 (442)
T ss_pred cCCCcchHH
Confidence 887654433
No 18
>PRK10655 potE putrescine transporter; Provisional
Probab=100.00 E-value=1.2e-43 Score=366.59 Aligned_cols=373 Identities=17% Similarity=0.293 Sum_probs=303.5
Q ss_pred cccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHhcc
Q 010690 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGE 126 (503)
Q Consensus 47 l~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~lg~ 126 (503)
++|+++.++++++++++++|+|++..++..+ .+|+..+++|++++++.++.+++++|+++++|++||.|.|.++.+||
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~--~~G~~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G~ 81 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLA--QVGTISILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGK 81 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcCc
Confidence 4689999999999999999999999988743 46888899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHHHH
Q 010690 127 GVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIA 206 (503)
Q Consensus 127 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~~~ 206 (503)
..||+.+|.+++.+.......+.....++..+++... .++....+.++++++.+.+|+.|+|...|+
T Consensus 82 ~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~-------------~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i 148 (438)
T PRK10655 82 SGNFMANYTYGVSLLIANVAIAISAVGYGTELFGATL-------------SPVQICLATIGVLWLCTVANFGGARITGQI 148 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-------------chHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 9999999999998887666655555666665553111 112222345666778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCchhhhHHHHHHHHHHhhhchHHHhhhhhhhcCCCCCchhHH
Q 010690 207 QAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGI 286 (503)
Q Consensus 207 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~k~P~k~ip~~~ 286 (503)
+.+.+..+++.++++++.+......+.+.....+.+ ...+.++..++...+|+|.|+|..++++||+|||+|++||++
T Consensus 149 ~~i~~~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi 226 (438)
T PRK10655 149 SSVTVWGVIIPVVGLSIIGWFWFSPSLYVAAWNPHH--LPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAV 226 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccccCCcCccC--CchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHH
Confidence 999988888777776665544321111111001111 112346777778889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCC-CCCCchHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhCC
Q 010690 287 GTALSICCALYMLVSIVIVGLVPYYEM-DPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDG 365 (503)
Q Consensus 287 ~~~~~~~~v~y~l~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~sr~l~~la~d~ 365 (503)
..+..++.++|++.........|++++ +.+.|..+.+++..+++...++.+..+++.+++.+++....+|++++++|||
T Consensus 227 ~~~~~~~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~~a~dg 306 (438)
T PRK10655 227 LGGTLGAAVIYIVSTNVIAGIVPNMELANSTAPFGLAFAQMFNPTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSSADEG 306 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHhhccchHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999998888887776655 3457888888888888888899999999999999999999999999999999
Q ss_pred CCchhhccccCCCCCchHHHHHHHHHHHHHHHhh-------CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CcccC
Q 010690 366 LLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM-------DVSALAGMVSVGTLLAFTMVAISVLILRYVPPD-EVPVP 437 (503)
Q Consensus 366 ~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~-------~~~~l~~i~~~~~li~~~~~~~~~l~~~~~~~~-~~~~~ 437 (503)
.+|++|+|.||+ ++|++++++.++++.++.+.. .++.+.++.+...++.|.+.+.+.+++|+++++ ++|+|
T Consensus 307 ~lP~~~~~v~~~-~tP~~all~~~~i~~~l~l~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~~~lr~~~~~~~~~~~ 385 (438)
T PRK10655 307 YFPKIFSRVTKV-DAPVQGMLIIVVIQSLLSLMTISPSLNSQFNVLVNLAVVTNIIPYILSMAALVIIQKVANVPPSKAK 385 (438)
T ss_pred chhHHHHhhCcC-CCCHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhH
Confidence 999999999965 999999999988876655432 367788999999999999999999999887754 34444
No 19
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=100.00 E-value=1.6e-43 Score=371.10 Aligned_cols=385 Identities=24% Similarity=0.368 Sum_probs=303.0
Q ss_pred cccccccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcCh-H-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccch
Q 010690 43 SHQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGP-A-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYS 120 (503)
Q Consensus 43 ~~~~l~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~-~-~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~ 120 (503)
++++++|+++.++++++++++++|+|++..++.. .+.+|+ + .++.|++++++.++.+++++|+++++|++||.|.|.
T Consensus 36 ~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~-~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG~y~~~ 114 (501)
T TIGR00911 36 EAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGV-LKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYI 114 (501)
T ss_pred cccccCccccHhHhhHhheeceEEeeEeecHHHH-HhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhH
Confidence 4456999999999999999999999999999885 455665 4 457888999999999999999999999999999999
Q ss_pred HHHhcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhh
Q 010690 121 YICVGEGVAWLIGWALILEY-TIGGSAVARGISPNLAM-LFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCV 198 (503)
Q Consensus 121 ~~~lg~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~ 198 (503)
++.+||.+|++.+|..++.. ....+..+...++++.. .+... ....+....++++++++.+.+|+.
T Consensus 115 ~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~------------~~~~~~~~~i~~~~i~~~~~ln~~ 182 (501)
T TIGR00911 115 LEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDC------------EVPEWAIRLVAVLCVLLLTLVNCL 182 (501)
T ss_pred HhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------------CCchHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999876533 23344444444554422 22110 011233345677778889999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCC--CCchhhhHHHHHHHHHHhhhchHHHhhhhhhhc
Q 010690 199 GIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGY--FPFGVNGMLAGSATVFFAFIGFDAVASTAEEVK 276 (503)
Q Consensus 199 g~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~k 276 (503)
|+|...|++.+++.++++.++++++.++.....+.....+....+ ...++.++..++...+|+|.|+|..++++||+|
T Consensus 183 Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~k 262 (501)
T TIGR00911 183 SVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVK 262 (501)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhc
Confidence 999999999999999999888777766553222221111111111 112355678888899999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCchHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhhcchhH
Q 010690 277 NPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPR 356 (503)
Q Consensus 277 ~P~k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~sr 356 (503)
||+|++||++..+..++.++|++..+++....|.+++..+.+....+.+...++...++.+.+.++.+++.++.++..+|
T Consensus 263 nP~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~is~~~~~~~~~~~~sR 342 (501)
T TIGR00911 263 NPYRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLGVMSWAMPALVGLSCFGSVNGSLFSSSR 342 (501)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988888766654433333333332223556788888889999999999999999
Q ss_pred HHHHHHhCCCCchhhccccCCCCCchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-Ccc
Q 010690 357 ILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPD-EVP 435 (503)
Q Consensus 357 ~l~~la~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~i~~~~~li~~~~~~~~~l~~~~~~~~-~~~ 435 (503)
+++++||||.+|++|+|.|+++++|++++++.++++.+....++...+..+.+....+.|.+...+.+++|+|+|+ +||
T Consensus 343 ~l~a~ardg~lP~~~~~v~~~~~~P~~all~~~~i~~l~~~~~~~~~l~~~~~~~~~i~y~l~~~a~i~lR~~~p~~~rp 422 (501)
T TIGR00911 343 LFFVGGREGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFANWLFNALAVAGLLWLRYKRPEMNRP 422 (501)
T ss_pred HHHHHHhcCCccHHHHHhcCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHheeccCCCCCCC
Confidence 9999999999999999999988999999999998887777677777788888888899999999999999988876 466
Q ss_pred cCCCc
Q 010690 436 VPSTL 440 (503)
Q Consensus 436 ~~~~~ 440 (503)
+|.+.
T Consensus 423 ~r~p~ 427 (501)
T TIGR00911 423 IKVPL 427 (501)
T ss_pred ccCch
Confidence 77664
No 20
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=100.00 E-value=6.3e-43 Score=360.63 Aligned_cols=371 Identities=19% Similarity=0.288 Sum_probs=304.6
Q ss_pred HHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHhcchHHHHHHHHHHH
Q 010690 59 IGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALIL 138 (503)
Q Consensus 59 ~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~lg~~~g~~~~~~~~~ 138 (503)
+++++++|+|+|..++. +.+.+||.++++|++++++.++.+++++|+++++|++||.|.|.+|.+||.+||+.+|.+++
T Consensus 2 ~~ig~~IGsGif~~~g~-~~~~aG~~~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~ 80 (446)
T PRK10197 2 LSIAGVIGASLFVGSSV-AIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWW 80 (446)
T ss_pred eeecchhHhHHHHHhHH-HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHH
Confidence 56799999999999998 46788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 010690 139 EYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAM 218 (503)
Q Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~~~~~~~~~~~~~~~ 218 (503)
.+.+..+......+..+..+.. ..| ...++++++++.+.+|+.|+|..+++|.+++.++++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~---~~~--------------~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~l 143 (446)
T PRK10197 81 FWVLVIPLEANIAAMILHSWVP---GIP--------------IWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAI 143 (446)
T ss_pred HHHHHHHHHHHHHHHHHHhccc---cCc--------------HHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHH
Confidence 9988777665555544443321 011 12346778888899999999999999999999999988
Q ss_pred HHHHHHHHhhhc--cc-C----CCCCCCCCCCCCchhhhHHHHHHHHHHhhhchHHHhhhhhhhcCCCCCchhHHHHHHH
Q 010690 219 LFVIIAGSYLGF--KT-G----WSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALS 291 (503)
Q Consensus 219 l~~~i~~~~~~~--~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~k~P~k~ip~~~~~~~~ 291 (503)
+.+++.++.... .+ . +.+.....++.|+++.++..++...+|+|.|+|..++++||+|||+|++||++..+..
T Consensus 144 i~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~ 223 (446)
T PRK10197 144 LAFIFLGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIW 223 (446)
T ss_pred HHHHHHHHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHH
Confidence 887766554221 10 0 0011112234567777899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCC--CCchHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhCCCCch
Q 010690 292 ICCALYMLVSIVIVGLVPYYEMDP--DTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPP 369 (503)
Q Consensus 292 ~~~v~y~l~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~sr~l~~la~d~~lP~ 369 (503)
.+.++|++..+++....|+++.+. ..+...+.+..++++...++.++++++.+++.+++++..+|++|++||||.+|+
T Consensus 224 ~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~ 303 (446)
T PRK10197 224 RISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPA 303 (446)
T ss_pred HHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCH
Confidence 999999999999998888765432 346667788888899999999999999999999999999999999999999999
Q ss_pred hhccccCCCCCchHHHHHHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CC-CCcccCCCc
Q 010690 370 FFSDVNKTTQVPVKSTIVTGIVAAALAFFM------DVSALAGMVSVGTLLAFTMVAISVLILRYV--PP-DEVPVPSTL 440 (503)
Q Consensus 370 ~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~------~~~~l~~i~~~~~li~~~~~~~~~l~~~~~--~~-~~~~~~~~~ 440 (503)
+|+|.|++ ++|+++++++.+++.+..+.. .++.+.++.+...++.|.+.+.+.+++|++ ++ .++++|.|.
T Consensus 304 ~~~~~~~~-~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~i~lr~~~~~~~~~~~~~~~~ 382 (446)
T PRK10197 304 VMGKINRS-KTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILRAEGSEIRLRMWL 382 (446)
T ss_pred HHHhhCcC-CCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCC
Confidence 99999954 999999999987765544332 357788889999999999999999999875 22 356788877
Q ss_pred chhhhhhh
Q 010690 441 QSSIDSVS 448 (503)
Q Consensus 441 ~~~~~~~~ 448 (503)
.++...+.
T Consensus 383 ~p~~~~~~ 390 (446)
T PRK10197 383 YPWLTWLV 390 (446)
T ss_pred cchHHHHH
Confidence 66655543
No 21
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=100.00 E-value=2e-42 Score=356.28 Aligned_cols=362 Identities=19% Similarity=0.266 Sum_probs=295.1
Q ss_pred cccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHhcc
Q 010690 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGE 126 (503)
Q Consensus 47 l~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~lg~ 126 (503)
.+|+++.++++.+.+++++|+|+|..++..+ ..|+.++++|+++++.+++.+++++|+++++|++||.|.|.+| +||
T Consensus 3 ~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a--~~G~~~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~g~ 79 (435)
T PRK10435 3 SAKKIGLFACTGVVAGNMMGSGIALLPANLA--SIGSIAIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-ISP 79 (435)
T ss_pred CCCcCCHHHHHHHHHhhHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-HCc
Confidence 4689999999999999999999999999753 4688899999999999999999999999999999999999999 899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHHHH
Q 010690 127 GVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIA 206 (503)
Q Consensus 127 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~~~ 206 (503)
.+||..+|.+++...+...........++...+.... .++....++++++++++.+|+.|+|...++
T Consensus 80 ~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~-------------~~~~~~~~~~~i~~~~~~ln~~gvk~~~~i 146 (435)
T PRK10435 80 AFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLN-------------DPIPAGIACIAIVWVFTFVNMLGGTWVSRL 146 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC-------------ChHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999999987666656565556666665543110 011111235566778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCC-CCCCCCCCCCCchhhhHHHHHHHHHHhhhchHHHhhhhhhhcCCCCCchhH
Q 010690 207 QAIVTTANVLAMLFVIIAGSYLGFKTGW-SGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLG 285 (503)
Q Consensus 207 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~k~P~k~ip~~ 285 (503)
+.+...++++.++.+++.+..+...+.. .+++ +..+.++.+++.++...+|+|.|+|..++++||+|||+|++||+
T Consensus 147 ~~i~~~~~li~~~~~~i~g~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrA 223 (435)
T PRK10435 147 TTIGLVLVLIPVVGTAIVGWHWFDAATYAANWN---TSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLA 223 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHhhccccc---CCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHH
Confidence 9988887776665555444332111111 1111 11234466788888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCC-CCCCchHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhC
Q 010690 286 IGTALSICCALYMLVSIVIVGLVPYYEM-DPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARD 364 (503)
Q Consensus 286 ~~~~~~~~~v~y~l~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~sr~l~~la~d 364 (503)
+..+..++.++|++..+......|+++. ..+.|+..++++..++|...++.++++++.+++.+++.+..+|..+++|||
T Consensus 224 i~~~~~iv~ilYil~~~~~~~~~p~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~~ard 303 (435)
T PRK10435 224 TMLGTGLAGIIYIAATQVISGMFPASVMAASGAPFAISASTILGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVRAAND 303 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCCcHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999997776 456799988888888999999999999999999999999999999999999
Q ss_pred CCCchhhccccCCCCCchHHHHHHHHHHHHHHH----h--------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010690 365 GLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAF----F--------MDVSALAGMVSVGTLLAFTMVAISVLILRY 428 (503)
Q Consensus 365 ~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~----~--------~~~~~l~~i~~~~~li~~~~~~~~~l~~~~ 428 (503)
|.+|++|+|.||+ ++|++++++++++..++.. + ..++.+.++.+...++.|++++++.+++|+
T Consensus 304 G~lP~~f~k~nk~-g~P~~Al~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~ir~~~ 378 (435)
T PRK10435 304 GNFPKVYGEVDKN-GIPKKGLLLAAVKMTALMILITLMNSSGGKASDLFGELTGIAVLLTMLPYFYSCVDLIRFEG 378 (435)
T ss_pred CCccHHHHhhCcC-CCCHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999964 9999999998777654331 1 135678899999999999999999886653
No 22
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=100.00 E-value=2.8e-42 Score=358.91 Aligned_cols=370 Identities=22% Similarity=0.375 Sum_probs=303.5
Q ss_pred cccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChH-HHHHHHHHHHHHHHHHHHHHHhhhhCCC-CCccccchHHHh
Q 010690 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPS-AGSAYHYSYICV 124 (503)
Q Consensus 47 l~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~-~i~~~il~~l~~~~~a~~~~el~~~~p~-~Gg~~~~~~~~l 124 (503)
++|++|.+++.++++++++|+|++..+... .+.+|++ .+++|++++++.++.+++++|+++++|+ +||.|+|.++.+
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~-~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~ 83 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNL-ASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGF 83 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHH-HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHc
Confidence 368899999999999999999999999885 4677886 6889999999999999999999999999 999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHH
Q 010690 125 GEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKEST 204 (503)
Q Consensus 125 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~ 204 (503)
||.+|++.+|.+++.+............+++...++... +..++....++++++++.+.+|+.|+|...
T Consensus 84 G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~-----------~~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~ 152 (473)
T TIGR00905 84 GPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFG-----------SGNPVPSILGASVLLWVFTFLVLRGVRQAA 152 (473)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-----------CCCcHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 999999999999988887766666666666665543110 011222233466777788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCC-CCCCC-CCCCCchhhhHHHHHHHHHHhhhchHHHhhhhhhhcCCCCCc
Q 010690 205 IAQAIVTTANVLAMLFVIIAGSYLGFKTGWS-GYELP-TGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDL 282 (503)
Q Consensus 205 ~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~k~P~k~i 282 (503)
|+|.+.+.++++.++++++.++.....+.+. ++... .+..+..+.++..++...+|+|.|+|..+++++|+|| +|++
T Consensus 153 ~i~~~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~r~i 231 (473)
T TIGR00905 153 FINTITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-KSDV 231 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-cccc
Confidence 9999999999988877777665432111111 11111 1111234556788888899999999999999999999 9999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccCCCC-CCCCc-hHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhhcchhHHHHH
Q 010690 283 PLGIGTALSICCALYMLVSIVIVGLVPYYEM-DPDTP-ISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMA 360 (503)
Q Consensus 283 p~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~-~~~~p-~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~sr~l~~ 360 (503)
||++..+..++.++|++.........|.+++ +.+.| ..++.++..+++...++.+.++++.+++.++.+.+.+|++|+
T Consensus 232 Prai~~~~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~a 311 (473)
T TIGR00905 232 GKATVLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFS 311 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988888876654 34677 667777777888889999999999999999999999999999
Q ss_pred HHhCCCCchhhccccCCCCCchHHHHHHHHHHHHHHHh-----hCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 010690 361 MARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFF-----MDVSALAGMVSVGTLLAFTMVAISVLILRYVP 430 (503)
Q Consensus 361 la~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~-----~~~~~l~~i~~~~~li~~~~~~~~~l~~~~~~ 430 (503)
|+|||.+|++|+|.|++ ++|++++++.++++.++.+. ..++.+.++.+...++.|.+.+.+.+++|+++
T Consensus 312 mardg~lP~~~~~v~~~-~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~ 385 (473)
T TIGR00905 312 AAKDGLFPKIFGRVNKN-GAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSLAVVMILVPYLLSAAYLLKLAKVG 385 (473)
T ss_pred HHhCCChhHHHHhhCcc-CCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999987 99999999998887654432 35678889999999999999999999998765
No 23
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-43 Score=350.97 Aligned_cols=386 Identities=26% Similarity=0.401 Sum_probs=329.8
Q ss_pred cccccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcCh-H-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHH
Q 010690 45 QKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGP-A-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYI 122 (503)
Q Consensus 45 ~~l~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~-~-~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~ 122 (503)
.+++|+++.+.+..+.+++++|+|+|..+..+ ...+|+ + +...|++.++++++-++|++||++.+|++||+|.|+.+
T Consensus 8 ~~~~kkigll~~v~livg~iIGsGIFvsp~~V-l~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ayi~~ 86 (479)
T KOG1287|consen 8 VQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGV-LANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAYISE 86 (479)
T ss_pred ccccceeeeecceeEEEEeeEecccccCcHHH-HHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhHHH
Confidence 34789999999999999999999999999997 455555 4 66668889999999999999999999999999999999
Q ss_pred HhcchHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhh
Q 010690 123 CVGEGVAWLIGWALILEYTIGG-SAVARGISPN-LAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGI 200 (503)
Q Consensus 123 ~lg~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~ 200 (503)
.+||.+||...|.-++...... +.++..++++ +...+. . .++..+..+.++.+++++++.+|+..+
T Consensus 87 afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp-~-----------c~~p~~~~~lla~~~l~~lt~~n~~~V 154 (479)
T KOG1287|consen 87 AFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP-L-----------CDVPRVASKLLAAALLVLLTLINSFSV 154 (479)
T ss_pred HhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC-C-----------CCCchHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999998877666554 7788888887 554443 1 233355667789999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCC--CchhhhHHHHHHHHHHhhhchHHHhhhhhhhcCC
Q 010690 201 KESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYF--PFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNP 278 (503)
Q Consensus 201 k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~k~P 278 (503)
|+..++|.+.+..+++.+.++++.+++........++.++. +. ..+...+..++..++|+|.|||.....+||+|||
T Consensus 155 ~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~-f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP 233 (479)
T KOG1287|consen 155 KWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSE-FEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNP 233 (479)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccc-cccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCc
Confidence 99999999999999999999999998855444333322221 11 1122347778889999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCchHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhhcchhHHH
Q 010690 279 QRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRIL 358 (503)
Q Consensus 279 ~k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~sr~l 358 (503)
+|+.||++.++..+++++|++..++...+.+.++.....-++..+.+...+...+.+.+.+.++.+++.++.++..||.+
T Consensus 234 ~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~~~ip~~ValS~~G~~n~~ifs~SR~~ 313 (479)
T KOG1287|consen 234 RRTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFAWAIPFSVALSLIGSLNSVIFSSSRLF 313 (479)
T ss_pred cccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 99999999999999999999999999999888877555556666666644444499999999999999999999999999
Q ss_pred HHHHhCCCCchhhccccCCCCCchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CcccC
Q 010690 359 MAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPD-EVPVP 437 (503)
Q Consensus 359 ~~la~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~i~~~~~li~~~~~~~~~l~~~~~~~~-~~~~~ 437 (503)
+++||+|++|+.|++.|++..+|..++++.+.++.+..+.++++++.+..+....+.+.+...+.+++|+|+|+ +||+|
T Consensus 314 ~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~rPiK 393 (479)
T KOG1287|consen 314 YAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPRPIK 393 (479)
T ss_pred HHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCEe
Confidence 99999999999999999998899999999999999999999999999999999999999999999999999886 57788
Q ss_pred CCcchhh
Q 010690 438 STLQSSI 444 (503)
Q Consensus 438 ~~~~~~~ 444 (503)
.+...+.
T Consensus 394 vpl~~p~ 400 (479)
T KOG1287|consen 394 VPLFIPI 400 (479)
T ss_pred eeeehHH
Confidence 8876554
No 24
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=100.00 E-value=2.4e-42 Score=360.76 Aligned_cols=379 Identities=23% Similarity=0.319 Sum_probs=302.6
Q ss_pred ccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChH-HHHHHHHHHHHHHHHHHHHHHhhhhCCC-CCccccchHHHhc
Q 010690 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPS-AGSAYHYSYICVG 125 (503)
Q Consensus 48 ~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~-~i~~~il~~l~~~~~a~~~~el~~~~p~-~Gg~~~~~~~~lg 125 (503)
||+++.+++.+++++.++|+|++..++.. .+.+||. .+++|++++++.++.+++++|+++++|+ .||.|.|.++.+|
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~-~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g 79 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTA-LATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVD 79 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhH-HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcC
Confidence 47899999999999999999999999985 5778885 7899999999999999999999999996 4567779999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHHH
Q 010690 126 EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (503)
Q Consensus 126 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~~ 205 (503)
|.+||+.+|.+++++....+......+.++..+... .+.+ ....++.++.+++|+.|+|...+
T Consensus 80 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--------------~~~~~~~~~~~~in~~gv~~~~~ 142 (478)
T TIGR00913 80 PAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDK---VNPA--------------VWIAIFYVFIVIINLFGVKGYGE 142 (478)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCHH--------------HHHHHHHHHHHHHHHhcchHHHH
Confidence 999999999999999988888777777766543220 1111 11334556778999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccC-------CCCCCCCCCCCCc----hhhhHHHHHHHHHHhhhchHHHhhhhhh
Q 010690 206 AQAIVTTANVLAMLFVIIAGSYLGFKTG-------WSGYELPTGYFPF----GVNGMLAGSATVFFAFIGFDAVASTAEE 274 (503)
Q Consensus 206 ~~~~~~~~~~~~~l~~~i~~~~~~~~~~-------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~G~~~~~~~~~e 274 (503)
++.+++.++++.++.+++.++.....+. +..+.+++++.+. .+.++..++...+|+|.|+|..++++||
T Consensus 143 ~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E 222 (478)
T TIGR00913 143 AEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGE 222 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHh
Confidence 9999998888777776665543221110 1111112223222 2567888888899999999999999999
Q ss_pred hcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccCCCC---C-------CCCchHHHHHHcchhHHHHHHHHHHHHHHH
Q 010690 275 VKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEM---D-------PDTPISSAFASHGMHWASYVITIGAVTALC 344 (503)
Q Consensus 275 ~k~P~k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~---~-------~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~ 344 (503)
+|||+|++||++..+...+.++|++..+.+....|+++. + ...|+....++.+.+++..++.++++++.+
T Consensus 223 ~knP~r~iPrai~~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~ 302 (478)
T TIGR00913 223 AANPRKSIPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQNHGIKVLPHIFNAVILISVL 302 (478)
T ss_pred hcChhhHHHHHHHHHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHHHHcCCchHhHHHHHHHHHHHH
Confidence 999999999999999999999999988887777775531 1 126777777777778888999999999999
Q ss_pred HHHHhhhcchhHHHHHHHhCCCCchhhccccCCCCCchHHHHHHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHH
Q 010690 345 STLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM------DVSALAGMVSVGTLLAFTM 418 (503)
Q Consensus 345 ~s~~~~~~~~sr~l~~la~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~------~~~~l~~i~~~~~li~~~~ 418 (503)
++.++.++..+|+++++||||.+|++|+|.||+ ++|++++++.++++.+..+.. .++.+.++.+...++.|++
T Consensus 303 ~~~~~~~~~~sR~l~a~ardg~lP~~f~k~~~~-~~P~~Ai~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~i~y~~ 381 (478)
T TIGR00913 303 SAANSSLYASSRTLYALAHQGLAPKIFAYVDRR-GVPYVAVIVSSLFGLLAFLAVSKKEAEVFTWLLNISGLSGFFTWMC 381 (478)
T ss_pred HHHHhhHHHHHHHHHHHHhCCcccHHHHhhCCC-CCCHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999965 999999999988875433321 2566788888899999999
Q ss_pred HHHHHHHHhcCC-----C-CCcccCCCcchhhh
Q 010690 419 VAISVLILRYVP-----P-DEVPVPSTLQSSID 445 (503)
Q Consensus 419 ~~~~~l~~~~~~-----~-~~~~~~~~~~~~~~ 445 (503)
.+++.+++|++. + .++|+|.|..+...
T Consensus 382 ~~~~~i~~r~~~~~~~~~~~~~p~~~~~~~~~~ 414 (478)
T TIGR00913 382 ICLSHIRFRKAMKAQGRSLDELPYKSQTGPYGS 414 (478)
T ss_pred HHHHHHHHHHHHHhcCCCcccCCccCCCcchHH
Confidence 999999887642 1 25678887766543
No 25
>PRK11021 putative transporter; Provisional
Probab=100.00 E-value=7.5e-42 Score=349.89 Aligned_cols=357 Identities=18% Similarity=0.236 Sum_probs=283.4
Q ss_pred cCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHhcchHHH
Q 010690 51 LTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAW 130 (503)
Q Consensus 51 ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~lg~~~g~ 130 (503)
++.|++.++.+++++|+|+|..++.. .+.+||..+++|++++++.++.+++++|+++++|++||.|.|.++.+||++|+
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~-~~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~gf 79 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALA-ALVAGNNSLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLGR 79 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHH-HHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhHH
Confidence 57899999999999999999999984 67788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 010690 131 LIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIV 210 (503)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~~~~~~~ 210 (503)
+.+|.++..+.............++...++.. .+....+.++++++.+.+|+.|+|...|++.++
T Consensus 80 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~ 144 (410)
T PRK11021 80 VTGWLFLSVIPVGLPAALQIAAGFGQALFGWS---------------SWQLLLAELLTLALLWLLNLRGASSSANLQTVI 144 (410)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCC---------------CchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999997766554444333444554444311 111223456677788899999999999999987
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCchhhhHHHHHHHHHHhhhchHHHhhhhhhhcCCCCCchhHHHHHH
Q 010690 211 TTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTAL 290 (503)
Q Consensus 211 ~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~k~P~k~ip~~~~~~~ 290 (503)
..+.+..+..+. ... +.....+. ..+..+.++.++..++...+|+|.|+|..++++||+|||+|++||++..+.
T Consensus 145 ~~~~~~i~~~~~----~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~ 218 (410)
T PRK11021 145 ALLIVALVVAIW----WAG-DIKPADIP-FPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGL 218 (410)
T ss_pred HHHHHHHHHHHH----HHc-CCchhcCC-CCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHH
Confidence 754433222211 111 11111111 111223467778888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCC-CCCCchHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhCCCCch
Q 010690 291 SICCALYMLVSIVIVGLVPYYEM-DPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPP 369 (503)
Q Consensus 291 ~~~~v~y~l~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~sr~l~~la~d~~lP~ 369 (503)
..+.++|++.........++++. ..+.|..+++++..+++...++.+..+++.+++.+++.+..+|++++++|||.+|+
T Consensus 219 ~~~~~lYil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~ 298 (410)
T PRK11021 219 LLAGLVYWACTVVVLHFPAYGDKQAAAASLPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPPS 298 (410)
T ss_pred HHHHHHHHHHHHHHHhcCCCcchhhccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccH
Confidence 99999999998887766654433 34467777777766677777888888999999999999999999999999999999
Q ss_pred hhccccCCCCCchHHHHHHHHHHHHHHHh-----hCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 010690 370 FFSDVNKTTQVPVKSTIVTGIVAAALAFF-----MDVSALAGMVSVGTLLAFTMVAISVLILRYVP 430 (503)
Q Consensus 370 ~~~~~~~~~~~P~~a~~~~~~~~~~~~~~-----~~~~~l~~i~~~~~li~~~~~~~~~l~~~~~~ 430 (503)
+|+|.||+ ++|+++++++++++.+..+. .+++.+..+.+...++.|.+.+++.+++++++
T Consensus 299 ~~~k~~~~-~tP~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~~~l~~~~ 363 (410)
T PRK11021 299 YLARLSAR-GVPVNALNAVLGCCAVSILLIYALGLNLEALIAYANGIFVLIYLLCMLAACKLLKGR 363 (410)
T ss_pred HHHhhccC-CCcHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999965 99999999988877654433 36778888888889999999999999887643
No 26
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=100.00 E-value=2.4e-41 Score=352.18 Aligned_cols=383 Identities=22% Similarity=0.326 Sum_probs=286.8
Q ss_pred CcccccccccccCHHHHHHHHhhhh-hhhhHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCcccc
Q 010690 40 PERSHQKLAKNLTIPHLVAIGVGST-IGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYH 118 (503)
Q Consensus 40 ~~~~~~~l~r~ls~~~~~~~~i~~~-iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~ 118 (503)
+.+++|+++|+++.++.+.++++.+ ++.|++...+. +.+.+||..+++|+++++..++.+++++|+++++|++||.|+
T Consensus 4 ~~g~~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~-~~~~~Gp~~~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y~ 82 (475)
T TIGR03428 4 RFGYQPQLHRKLGRYASFAAGFSFVSILTTIFQLFGF-GYGFGGPAFFWTWPVVFVGQLLVALNFAELAARYPISGAIYQ 82 (475)
T ss_pred hcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHH-HHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHH
Confidence 3567888999999999999999875 89999998887 568899999999999999999999999999999999999999
Q ss_pred chHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---chhhhhhhccCCCCccchhHHHHHHHHHHHHH
Q 010690 119 YSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSAD---SLPFFMARQQIPGLGIIVDPCAAILVLIVTGL 195 (503)
Q Consensus 119 ~~~~~lg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i 195 (503)
|.++.+||.+||+.+|.+++++....+.........+...+.... ..|.+ ..|...++...++++++++.+.+
T Consensus 83 ~~~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i 158 (475)
T TIGR03428 83 WSRRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTL----TSPSGAANAVLLGSVLLVLTTVI 158 (475)
T ss_pred HHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccc----cCCCchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887665554444433332221000 00000 00111233445567777889999
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCC-CCCCCchhhhHHHHHHHHHHhhhchHHHhhhhhh
Q 010690 196 LCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELP-TGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEE 274 (503)
Q Consensus 196 ~~~g~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e 274 (503)
|+.|+|...+++.+...++++.++++++..+.+..++....+... .+..+.....++.+....+|+|.|+|..++++||
T Consensus 159 n~~g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE 238 (475)
T TIGR03428 159 NCIGVEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEE 238 (475)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence 999999999999999999987777666555443221110011111 1111222344666777789999999999999999
Q ss_pred hcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccCCC--CCCCCchHHHHHHc-chhHHHHHHHHHHHHHHHHHHHhhh
Q 010690 275 VKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYE--MDPDTPISSAFASH-GMHWASYVITIGAVTALCSTLMGSI 351 (503)
Q Consensus 275 ~k~P~k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~--~~~~~p~~~~~~~~-~~~~~~~l~~~~~~~~~~~s~~~~~ 351 (503)
+|||+|++||++..+..+..++|.+..+......+..+ ...+.+...++.+. +.++. ..+...++++.+++.++..
T Consensus 239 ~knP~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~-~~~~~~~~i~~~~~~~~~~ 317 (475)
T TIGR03428 239 TKNPRRVAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLAAEGLPYVLSAVLDSPWG-TVLLVDVAIAILVCTLAIQ 317 (475)
T ss_pred hcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcCCCchHHHHHHHhCcHhH-HHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888777777776655321 11122222334443 33444 4555667788999999999
Q ss_pred cchhHHHHHHHhCCCCc--hhhccccCCCCCchHHHHHHHHHHHHHHHhh-----CHHHHHHHHHHHHHHHHHHHHHHHH
Q 010690 352 LPQPRILMAMARDGLLP--PFFSDVNKTTQVPVKSTIVTGIVAAALAFFM-----DVSALAGMVSVGTLLAFTMVAISVL 424 (503)
Q Consensus 352 ~~~sr~l~~la~d~~lP--~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~-----~~~~l~~i~~~~~li~~~~~~~~~l 424 (503)
+..+|++|++||||.+| ++|+|+|+|+++|++++++.++++.++.++. .++.+.++.+...++.|.+.....+
T Consensus 318 ~~~sR~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i~~~~~~af~~l~s~~~~~~~~~Y~~~~~~~l 397 (475)
T TIGR03428 318 TAGSRLMFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSALFATLASVCIVLIYLAYLLVTVPLL 397 (475)
T ss_pred HHHHHHHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 4899999988999999999999987766653 3466778888888999998877777
Q ss_pred HHhc
Q 010690 425 ILRY 428 (503)
Q Consensus 425 ~~~~ 428 (503)
..|+
T Consensus 398 ~~~~ 401 (475)
T TIGR03428 398 LRRL 401 (475)
T ss_pred HHHH
Confidence 6554
No 27
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=100.00 E-value=2.8e-41 Score=352.89 Aligned_cols=390 Identities=18% Similarity=0.220 Sum_probs=293.1
Q ss_pred cccccccccccCHHHHHHHHhhhhh-hhhHHHHHHHHHHhhcCh-HHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCcccc
Q 010690 41 ERSHQKLAKNLTIPHLVAIGVGSTI-GAGVYILVGTVAREHSGP-ALALSFLIAGIASAFSAFCYAELASRCPSAGSAYH 118 (503)
Q Consensus 41 ~~~~~~l~r~ls~~~~~~~~i~~~i-G~G~~~~~~~~~~~~~G~-~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~ 118 (503)
.+++++++|+++.++.++++++.+. ..|.+...+. +.+.+|| +.+++|++++++.++.+++++|+++++|++||.|+
T Consensus 4 ~g~~~~l~r~l~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y~ 82 (482)
T TIGR00907 4 LGYKPELKREFSLWSIFGFAFSISNSWTGISTTYNY-GLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQYF 82 (482)
T ss_pred cCCcceeecccchhHHHHHHHHHHHHHHHHHHHHHH-hhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHH
Confidence 5677889999999999999998652 2566555543 5678898 58999999999999999999999999999999999
Q ss_pred chHHHhcc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHH
Q 010690 119 YSYICVGE----GVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTG 194 (503)
Q Consensus 119 ~~~~~lg~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 194 (503)
|+++.+|+ ..||+.+|.+++++....+......+.++...+......+.+ ....|....+.++++++.++
T Consensus 83 ~~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~i~~~~~~~~~~ 156 (482)
T TIGR00907 83 WSAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREY------IPTRWHIFGIMIGIHLIHAL 156 (482)
T ss_pred HHHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc------cccCchhhhhHHHHHHHHHH
Confidence 99999874 568999999999998887777777777766544211100001 11123333456677788999
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---c---CCCCCCCCC-CCCCchhhhHHHHHHHHHHhhhchHH
Q 010690 195 LLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFK---T---GWSGYELPT-GYFPFGVNGMLAGSATVFFAFIGFDA 267 (503)
Q Consensus 195 i~~~g~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~---~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~G~~~ 267 (503)
+|+.|.|...+++.++..++++.++++++..+..... + .+.++.+.. ++.+.++ +++.++....|+|.|+|.
T Consensus 157 in~~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~-~~~~~~~~~~fsf~G~e~ 235 (482)
T TIGR00907 157 INSLPTKWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGF-AFLLGLLNPAWSMTGYDG 235 (482)
T ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCch-hhhhhhhhhHHHhcCcch
Confidence 9999999999999998888877776555444332111 1 011112111 2334443 356667778899999999
Q ss_pred HhhhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccC-CCC-C--CCCchHHHHHHc-chhHHHHHHHHHHHHH
Q 010690 268 VASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPY-YEM-D--PDTPISSAFASH-GMHWASYVITIGAVTA 342 (503)
Q Consensus 268 ~~~~~~e~k~P~k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~-~~~-~--~~~p~~~~~~~~-~~~~~~~l~~~~~~~~ 342 (503)
+++++||+|||+|++||++..+..+..+++++..+......++ ++. + ...|+.+.+.+. +.++...++.+.++++
T Consensus 236 ~~~~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~ 315 (482)
T TIGR00907 236 TAHMAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYNALGNKAGAIFLLCLILVT 315 (482)
T ss_pred hhHHHHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 9999999999999999999999988777665555554444331 111 2 225888887765 4447778888899999
Q ss_pred HHHHHHhhhcchhHHHHHHHhCCCCc--hhhccccCCCCCchHHHHHHHHHHHHHHHhh-----CHHHHHHHHHHHHHHH
Q 010690 343 LCSTLMGSILPQPRILMAMARDGLLP--PFFSDVNKTTQVPVKSTIVTGIVAAALAFFM-----DVSALAGMVSVGTLLA 415 (503)
Q Consensus 343 ~~~s~~~~~~~~sr~l~~la~d~~lP--~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~-----~~~~l~~i~~~~~li~ 415 (503)
.+++.++.+++.+|+++++||||.+| ++|+|+|+++++|+++++++++++.++.+.. .++.+.++.+...++.
T Consensus 316 ~~~~~~~~~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~~l~~~~~~~~~i~ 395 (482)
T TIGR00907 316 SFFCAITCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSVCTVALDVS 395 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 9999999998999999999998887766543 4677888889999999
Q ss_pred HHHHHHHHHHHhcCCCCCcccCC
Q 010690 416 FTMVAISVLILRYVPPDEVPVPS 438 (503)
Q Consensus 416 ~~~~~~~~l~~~~~~~~~~~~~~ 438 (503)
|.+...+.++.|+++.+++|++.
T Consensus 396 y~~~~~~~l~~~~~~~~~~~f~l 418 (482)
T TIGR00907 396 YVIPIICKLAKGRNTIAPGPFWL 418 (482)
T ss_pred HHHHHHHHHHhcCCCCCCCCCcC
Confidence 99888777665554334556665
No 28
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=100.00 E-value=2.1e-40 Score=344.42 Aligned_cols=368 Identities=20% Similarity=0.327 Sum_probs=294.8
Q ss_pred cccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCC-CccccchHHHhcc
Q 010690 49 KNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSA-GSAYHYSYICVGE 126 (503)
Q Consensus 49 r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~-~i~~~il~~l~~~~~a~~~~el~~~~p~~-Gg~~~~~~~~lg~ 126 (503)
|+++.+++.++++++++|+|+|..++..+ +.+|++ .+++|++++++.++.+++++|+++++|++ ||.|.|.++.+||
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~-~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~ 79 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMA-AGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGP 79 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHH-HhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCc
Confidence 68999999999999999999999999854 566776 78889999999999999999999999986 5999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHHHH
Q 010690 127 GVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIA 206 (503)
Q Consensus 127 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~~~ 206 (503)
..||+.+|.+++++.............++..++.... .........++.++++++..+|+.|+|...++
T Consensus 80 ~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~-----------~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i 148 (468)
T TIGR03810 80 FMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFG-----------GGNNPPSIIGASVLLWCVHFLVLRGVEGAAFI 148 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----------CCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 9999999999998877766555555555554432110 00011111235566667889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCCC--CCCCC-CC-CCchhhhHHHHHHHHHHhhhchHHHhhhhhhhcCCCCCc
Q 010690 207 QAIVTTANVLAMLFVIIAGSYLGFKTGWSG--YELPT-GY-FPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDL 282 (503)
Q Consensus 207 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~--~~~~~-~~-~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~k~P~k~i 282 (503)
|.+++.++++.++++++.++.....+.+.. +.+.+ +. .+..+.++..++...+|+|.|+|...++++|.|| +|++
T Consensus 149 ~~i~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~-~k~i 227 (468)
T TIGR03810 149 NTITTIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEK-RSDV 227 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccC-cccc
Confidence 999999999888877776554321111111 11110 11 1223445667778899999999999999999998 6999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCC-CCCc-hHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhhcchhHHHHH
Q 010690 283 PLGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTP-ISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMA 360 (503)
Q Consensus 283 p~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~~-~~~p-~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~sr~l~~ 360 (503)
||++..+...+.++|++...+.....|.+++. .+.| ...+.++..++|...++.++++++.+++.+++.+..+|++++
T Consensus 228 p~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a 307 (468)
T TIGR03810 228 GKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLL 307 (468)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888888765543 3445 667777888899999999999999999999999999999999
Q ss_pred HHhCCCCchhhccccCCCCCchHHHHHHHHHHHHHHHh-----hCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 010690 361 MARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFF-----MDVSALAGMVSVGTLLAFTMVAISVLILRYVP 430 (503)
Q Consensus 361 la~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~-----~~~~~l~~i~~~~~li~~~~~~~~~l~~~~~~ 430 (503)
+||||.+|++|+|.||+ ++|+++++++.+++.++... ..++.+.++.+...++.|.+.+.+.+++|+|+
T Consensus 308 ~ardg~lP~~f~k~~~~-~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~ 381 (468)
T TIGR03810 308 MAKDKLMPKYFGKENAN-GAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATSAILVPYLWSAAYQVKLSWRG 381 (468)
T ss_pred HHhCCCccHHHHhhCCC-CCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999965 99999999988887655433 23677888899999999999999999998765
No 29
>TIGR00930 2a30 K-Cl cotransporter.
Probab=100.00 E-value=7.6e-41 Score=366.38 Aligned_cols=382 Identities=17% Similarity=0.249 Sum_probs=304.2
Q ss_pred ccccccCHHHHHHHH-hhhhhhhhHHHHHHHHHHhhcChH-HHHHHHHHHHHHHHHHHHHHHhhhh-CCCCCccccchHH
Q 010690 46 KLAKNLTIPHLVAIG-VGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASR-CPSAGSAYHYSYI 122 (503)
Q Consensus 46 ~l~r~ls~~~~~~~~-i~~~iG~G~~~~~~~~~~~~~G~~-~i~~~il~~l~~~~~a~~~~el~~~-~p~~Gg~~~~~~~ 122 (503)
+.++++|+++++++. +.+++|+|+|..+++++ +.+|.+ +++.|+++++++++++++++|+++. +|++||.|+|++|
T Consensus 73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vv-g~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yisr 151 (953)
T TIGR00930 73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIV-GQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLISR 151 (953)
T ss_pred CCCcccceeEeeeHhhhHhHheeeeeeeHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 346789999999986 99999999999999974 566765 7888999999999999999999998 9999999999999
Q ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhh
Q 010690 123 CVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKE 202 (503)
Q Consensus 123 ~lg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~ 202 (503)
.+||.+|+..||.+++++.+..+.++.++++++...+.... .... .......+.++++++++++++|+.|+|+
T Consensus 152 alGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~-~~~~------~~~~~~~~iia~i~l~ll~~In~~Gvk~ 224 (953)
T TIGR00930 152 SLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENG-SKIM------VDPINDIRIYGTVTVVVLLGISFAGMEW 224 (953)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cccc------cCccccchHHHHHHHHHHHHHHHhhHHH
Confidence 99999999999999999999999999999999988874211 0000 0001123456888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccc---CCCCCCC---CCCC---CCchhhhHHHHHHHHHHhhhchHHHhhhhh
Q 010690 203 STIAQAIVTTANVLAMLFVIIAGSYLGFKT---GWSGYEL---PTGY---FPFGVNGMLAGSATVFFAFIGFDAVASTAE 273 (503)
Q Consensus 203 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~---~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 273 (503)
..|+|.+++.++++.++.+++.++...... ++..++. ..++ .+.+..+++..+...+++++|+++.+++++
T Consensus 225 ~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sg 304 (953)
T TIGR00930 225 ENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISG 304 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888777766554321110 1111100 0011 122222366677778889999999999999
Q ss_pred hhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC--CCc-----------------hH----HHHH-Hcchh
Q 010690 274 EVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDP--DTP-----------------IS----SAFA-SHGMH 329 (503)
Q Consensus 274 e~k~P~k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~~~--~~p-----------------~~----~~~~-~~~~~ 329 (503)
|+|||+|++|||++.++++++++|++.++++....+++.... +.. .. ..+. .....
T Consensus 305 ElKnP~r~IPratl~ai~i~~vlYllv~~~~~~~~~~d~~~~~~~~l~~~~~g~~~f~~~~~~p~~~gL~~~~~~~~~~~ 384 (953)
T TIGR00930 305 DLKDPQKAIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFSECAHNTCSYGLMNNLQVMSLVS 384 (953)
T ss_pred hccChhhhhHHHHHHHHHHHHHHHHHHHHHHHccccHhhhcccchhhhcccccchhhhhhcccchhhhhcchHHHHhhhh
Confidence 999999999999999999999999999987777766433211 100 00 0011 11112
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhCCCCc--hhhccccCCCCCchHHHHHHHHHHHHHHHhhCHHHHHHH
Q 010690 330 WASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLP--PFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGM 407 (503)
Q Consensus 330 ~~~~l~~~~~~~~~~~s~~~~~~~~sr~l~~la~d~~lP--~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~i 407 (503)
....++.++++++.+++.++++++++|+++++||||.+| ++|+|.|+++++|+++++++++++.++.++++++.+.++
T Consensus 385 ~~~~lI~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP~~Alllt~iIa~l~ili~~l~~ia~l 464 (953)
T TIGR00930 385 PFPPLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLLTAFIAEGFILIAELNTIAPI 464 (953)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 345789999999999999999999999999999999999 899999999899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC-CCCcc
Q 010690 408 VSVGTLLAFTMVAISVLILRYVP-PDEVP 435 (503)
Q Consensus 408 ~~~~~li~~~~~~~~~l~~~~~~-~~~~~ 435 (503)
.+..++++|++++++++.+|.++ |+.+|
T Consensus 465 is~~fLl~Y~lvnla~~~l~~~~~p~~RP 493 (953)
T TIGR00930 465 ISNFFLASYALINFSCFHASLLRSPGWRP 493 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCC
Confidence 99999999999999999887654 44444
No 30
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=4.1e-40 Score=326.27 Aligned_cols=387 Identities=19% Similarity=0.262 Sum_probs=311.3
Q ss_pred CccCCCCcccccccccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcCh-HHHHHHHHHHHHHHHHHHHHHHhhhhCCC
Q 010690 34 DSVHTKPERSHQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGP-ALALSFLIAGIASAFSAFCYAELASRCPS 112 (503)
Q Consensus 34 ~~~~~~~~~~~~~l~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~-~~i~~~il~~l~~~~~a~~~~el~~~~p~ 112 (503)
|+++..+.+++|+++|+++.|+.+.++++.+--.-.+..+....+..+|+ .++|+|+++++..++++++++|+++.+|.
T Consensus 33 d~~~L~~lgYkqef~R~fs~~s~fg~sFs~~g~~~~i~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~Pt 112 (550)
T KOG1289|consen 33 DEELLAELGYKQELKREFSLFSIFGISFSLMGLLPGIATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPT 112 (550)
T ss_pred CHHHHHHcCCchhhhhhhhHHHHHHHHHHHhcchhhhhhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCC
Confidence 44445566799999999999999999887652222233333333444555 59999999999999999999999999999
Q ss_pred CCccccchHHHhcch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHH
Q 010690 113 AGSAYHYSYICVGEG----VAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAIL 188 (503)
Q Consensus 113 ~Gg~~~~~~~~lg~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 188 (503)
+||.|+|.....+|+ .+|+.||...+++..+.++...+.++.+....... .|.+ ....++..++..++
T Consensus 113 sGgLy~waa~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~--np~y------~~~~~~~~~v~~ai 184 (550)
T KOG1289|consen 113 SGGLYFWAAVLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLT--NPNY------EPTNYHQFGVFEAI 184 (550)
T ss_pred CCcHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhc--CCCC------cccceEeehHHHHH
Confidence 999999999987665 66788888888888888877777777766554321 1222 33456666778899
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--------CCCCCCCCCCCCCchhhhHHHHHHHHHH
Q 010690 189 VLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKT--------GWSGYELPTGYFPFGVNGMLAGSATVFF 260 (503)
Q Consensus 189 ~~~~~~i~~~g~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (503)
.++..++|+...|...+++.+...+.++.+++..|......... .|..+++.+++.+++|. ++.++....|
T Consensus 185 ~~v~~lln~~p~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~a-fil~f~~~~w 263 (550)
T KOG1289|consen 185 LFVHGLLNSLPTRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWA-FILGFFNPAW 263 (550)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHH-HHHhhcccee
Confidence 99999999999999999999999999998888777665432221 24556667777777776 7778888999
Q ss_pred hhhchHHHhhhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccCCC---CCC--CCchHHHHHHcchhHHHHHH
Q 010690 261 AFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYE---MDP--DTPISSAFASHGMHWASYVI 335 (503)
Q Consensus 261 ~~~G~~~~~~~~~e~k~P~k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~---~~~--~~p~~~~~~~~~~~~~~~l~ 335 (503)
++.|+|+.+|++||+|||+|++|||+..+..+..++-.+..+.+..+++++. .++ ..|+.+.+.+..++-...++
T Consensus 264 t~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~k~~v~~ 343 (550)
T KOG1289|consen 264 TMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALGKKGAVFL 343 (550)
T ss_pred EEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhcCCCceEeh
Confidence 9999999999999999999999999999999999999999999999888432 232 47999999998776666888
Q ss_pred HHHHHHHHHHHHHhhhcchhHHHHHHHhCCCCc--hhhccccCCCCCchHHHHHHHHHHHHHHHhhC-----HHHHHHHH
Q 010690 336 TIGAVTALCSTLMGSILPQPRILMAMARDGLLP--PFFSDVNKTTQVPVKSTIVTGIVAAALAFFMD-----VSALAGMV 408 (503)
Q Consensus 336 ~~~~~~~~~~s~~~~~~~~sr~l~~la~d~~lP--~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~-----~~~l~~i~ 408 (503)
...+++..|-++.+...+.||..|+.+|||.+| ++++|+|+++++|.+|+++..+++.++.++.. ++.+.+..
T Consensus 344 ~~l~ii~~f~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~Af~Alfs~a 423 (550)
T KOG1289|consen 344 LSLIIIALFFMGISSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASATAFNALFSAA 423 (550)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 899999999999999999999999999999999 99999999999999999999999988777653 45666777
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 010690 409 SVGTLLAFTMVAISVLILRYV 429 (503)
Q Consensus 409 ~~~~li~~~~~~~~~l~~~~~ 429 (503)
.++..++|.......+..+|+
T Consensus 424 ~i~l~~Ay~iP~~~rlf~~r~ 444 (550)
T KOG1289|consen 424 AIALFIAYAIPIFCRLFFGRD 444 (550)
T ss_pred HHHHHHHHHHhHHhheeeccc
Confidence 777788888776665544443
No 31
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=100.00 E-value=3.4e-39 Score=332.73 Aligned_cols=367 Identities=32% Similarity=0.522 Sum_probs=302.0
Q ss_pred cCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHH-HHHHHHHHHhhhhCCCCCccccchHHHhcchHH
Q 010690 51 LTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIAS-AFSAFCYAELASRCPSAGSAYHYSYICVGEGVA 129 (503)
Q Consensus 51 ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~-~~~a~~~~el~~~~p~~Gg~~~~~~~~lg~~~g 129 (503)
+|+|++++++++.++|+|++..+ ..+.+|+..++++++++++. ++.+++++|+++++|++||.|.|.++.+||++|
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~---~~~~~G~~~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g 77 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP---AAASAGPSAILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWG 77 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH---HHTCTGCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccch
Confidence 58999999999999999998876 34668988998899998888 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 010690 130 WLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAI 209 (503)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~~~~~~ 209 (503)
++.+|.+++.+....+......++++...++. .+ ++.++....++++++++.+.+|+.|.|..+|++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~------~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~ 146 (426)
T PF13520_consen 78 FIVGWLYWVAYILSLASVASSFASYLLSLFGP-----DL------NPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNI 146 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTG-----GG------TCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred hcccceeEEEeeccccccccchhhhhhhcccc-----cc------ccccchheeeeecccccceEeeechhhhhhhhhhh
Confidence 99999999999998887777777777665531 10 11123334567888899999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHhhhcccCCCCC-CCCCCCCCchhhhHHHHHHHHHHhhhchHHHhhhhhhhcCCCCCchhHHH
Q 010690 210 VTTANV-LAMLFVIIAGSYLGFKTGWSGY-ELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIG 287 (503)
Q Consensus 210 ~~~~~~-~~~l~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~k~P~k~ip~~~~ 287 (503)
++.+++ ..++++++.++....++..... +..+...+.++.+++.++...+|+|.|+|..++++||.|| |++||++.
T Consensus 147 ~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~--k~ip~ai~ 224 (426)
T PF13520_consen 147 LTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN--KTIPRAII 224 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS--HHHHHHHH
T ss_pred hhhhhhhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc--hhheeecc
Confidence 999999 5666666666654333222110 0111233445556788889999999999999999999777 89999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCC----CchHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHh
Q 010690 288 TALSICCALYMLVSIVIVGLVPYYEMDPD----TPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMAR 363 (503)
Q Consensus 288 ~~~~~~~v~y~l~~~~~~~~~~~~~~~~~----~p~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~sr~l~~la~ 363 (503)
.+.+.+.++|++..+.+....|+++.+.. .+.....+..+++++..++.+...++.+++.++.+.+.+|.+++++|
T Consensus 225 ~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~ 304 (426)
T PF13520_consen 225 ISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMAR 304 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhhccccccc
Confidence 99999999999999999999987665432 24556667777789999999999999999999999999999999999
Q ss_pred CCCCchhhccccCCCCCchHHHHHHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 010690 364 DGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM------DVSALAGMVSVGTLLAFTMVAISVLILRYVPPDEV 434 (503)
Q Consensus 364 d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~------~~~~l~~i~~~~~li~~~~~~~~~l~~~~~~~~~~ 434 (503)
||.+|++|+|.| |+++|++++++..+++.++.... .++.+.++.++...+.|.+...+.+++|+|+++.+
T Consensus 305 d~~lP~~~~~~~-k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (426)
T PF13520_consen 305 DGVLPKWFAKVN-KFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSLSSVGYLISYILVILAVLFLRRKRPDLK 380 (426)
T ss_dssp TTSSSGGGGTTS-SSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHSCSSG
T ss_pred ccchhhhhhhcc-ccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcC
Confidence 999999999999 66999999999999986654322 46789999999999999999999999998877653
No 32
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-37 Score=325.18 Aligned_cols=385 Identities=37% Similarity=0.569 Sum_probs=316.2
Q ss_pred ccccccccCHHH-HHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHH
Q 010690 44 HQKLAKNLTIPH-LVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYI 122 (503)
Q Consensus 44 ~~~l~r~ls~~~-~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~ 122 (503)
+++++|+++.++ ......+.++|.|++..++..+. .+ +...+.|++++++..+.+++++|+++++|++||.|.|.++
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~-~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~ 84 (466)
T COG0531 7 SSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAG-LA-PAAILAWLIAGIIILFLALSYAELSSAIPSAGGAYAYAKR 84 (466)
T ss_pred chhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHH-hc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeehhh
Confidence 344678999999 88889999999999999987543 33 5555558888888888899999999999999999999999
Q ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhh
Q 010690 123 CVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKE 202 (503)
Q Consensus 123 ~lg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~ 202 (503)
.+||+.|++.+|.+++.+....+......+.++...++... .+ ....+....+++++.++...+|+.|+|.
T Consensus 85 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~------~~~~~~~~~~~~~~~~~~~~ln~~G~~~ 155 (466)
T COG0531 85 ALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG---LL------SIGPLLIILIALALIALLTLLNLRGIKA 155 (466)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch---hh------cCCchHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999999999999999999888888887776664211 00 0000344456888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCchhhhHHHHHHHHHHhhhchHHHhhhhhhhcCCCCCc
Q 010690 203 STIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDL 282 (503)
Q Consensus 203 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~k~P~k~i 282 (503)
..+++.+.+.++++.++.+++.++.....+.........+ ....+..+..++...+|+|.|+|..++++||+|||+|++
T Consensus 156 ~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~i 234 (466)
T COG0531 156 SAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNP-GGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTI 234 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCccc-ccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccc
Confidence 9999999999999999999888776544332211111111 112233578888889999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC---CchHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhhcchhHHHH
Q 010690 283 PLGIGTALSICCALYMLVSIVIVGLVPYYEMDPD---TPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILM 359 (503)
Q Consensus 283 p~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~---~p~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~sr~l~ 359 (503)
||+++.+.+.+.++|++.........+.++.... .|.........+.++..++.+..+++.+++.+++..+.+|.++
T Consensus 235 p~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~ 314 (466)
T COG0531 235 PRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVLY 314 (466)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999886443322 6888888888778999999999999999999999999999999
Q ss_pred HHHhCCCCchhhccccCCCCCchHHHHHHHHHHHHHHHh-h----CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-C
Q 010690 360 AMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFF-M----DVSALAGMVSVGTLLAFTMVAISVLILRYVPPD-E 433 (503)
Q Consensus 360 ~la~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~-~----~~~~l~~i~~~~~li~~~~~~~~~l~~~~~~~~-~ 433 (503)
+++|||.+|++|+|.|+++++|++++++.++++..+... . .++.+..+.+...++.|.+...+.+.+|+++++ +
T Consensus 315 ~~ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~~l~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 394 (466)
T COG0531 315 AMARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFLIAYLLVALALLVLRRKKPDLK 394 (466)
T ss_pred HHHhCCCccHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 999999999999999999889999999999998833322 2 257899999999999999999999999887553 3
Q ss_pred cccCCCc
Q 010690 434 VPVPSTL 440 (503)
Q Consensus 434 ~~~~~~~ 440 (503)
++++.+.
T Consensus 395 ~~~~~~~ 401 (466)
T COG0531 395 RPFRLPL 401 (466)
T ss_pred Ccccccc
Confidence 4455444
No 33
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=100.00 E-value=3.2e-37 Score=321.28 Aligned_cols=379 Identities=20% Similarity=0.300 Sum_probs=272.3
Q ss_pred cccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHH-HHHHHHHHHhhhhCCCCCccccchHHHhcch
Q 010690 49 KNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIAS-AFSAFCYAELASRCPSAGSAYHYSYICVGEG 127 (503)
Q Consensus 49 r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~-~~~a~~~~el~~~~p~~Gg~~~~~~~~lg~~ 127 (503)
||++.++..++.++.+.+..+. + +.+..|+..+++|++++++. ++.+++++|+++++|++||.|.|+++.+|++
T Consensus 1 ~~~~~~~l~~~~~~~v~~~~~~--~---~~a~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~ 75 (474)
T TIGR03813 1 KKLTVVTLAIMNITAVVSLRGL--P---AEAEYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGAR 75 (474)
T ss_pred CcccHHHHHHHHHHHHHHhhcc--h---HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcChh
Confidence 4699999999988888776553 2 23457888888899998876 5799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHHHHH
Q 010690 128 VAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQ 207 (503)
Q Consensus 128 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~~~~ 207 (503)
+|++.+|.+|+.+.+.........+..+..........| .++...+....+.+++.++++.+|+.|+|..++++
T Consensus 76 ~gf~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~ 149 (474)
T TIGR03813 76 WGFLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEATVDE------SLAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVA 149 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCc------ccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 999999999998876544333333333322211100000 11222233223455666678889999999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHHhhhcccCCC--CCCCCCCCCCc--hhhhHHHHHHHHHHhhhchHHHhhhhhhhcCCCCCc
Q 010690 208 AIVTTAN-VLAMLFVIIAGSYLGFKTGWS--GYELPTGYFPF--GVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDL 282 (503)
Q Consensus 208 ~~~~~~~-~~~~l~~~i~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~G~~~~~~~~~e~k~P~k~i 282 (503)
.+...+. ++.++++++.++......+.. +.+. .+..|+ ++...... ...+|+|.|+|..+..+||+|||+|++
T Consensus 150 ~~~~~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~-~~~~p~~~~~~~~~~~-~~~~~af~G~e~~~~~a~E~knP~r~i 227 (474)
T TIGR03813 150 KWGGIVGTIIPAAILVILGISYLLTGGESQIPLRW-DDAFPDFTNFDNVVLA-ASIFLFYAGMEMNAVHVKDVDNPDKNY 227 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCH-HHhCCCccccccHHHH-HHHHHHHhchhHhHHHHHhccCcccch
Confidence 8765443 343334444333221111111 1110 011121 22222222 235789999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCch----HHHHHHcchhHHHHHHHHHHHHHHHHHHHhhhcchhHHH
Q 010690 283 PLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPI----SSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRIL 358 (503)
Q Consensus 283 p~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~----~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~sr~l 358 (503)
||++..+..++.++|++..+.+....|+++...+.+. .+.....+.++...++.+.+.++.+++..++....+|++
T Consensus 228 PrAi~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~l~~~~~~~~~~sR~~ 307 (474)
T TIGR03813 228 PIAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWLGPILAFALAIGVLAGVVTWVAGPSSGM 307 (474)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988887665443333 334445566788888888888999999999999999999
Q ss_pred HHHHhCCCCchhhccccCCCCCchHHHHHHHHHHHHHHHhh----C----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 010690 359 MAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM----D----VSALAGMVSVGTLLAFTMVAISVLILRYVP 430 (503)
Q Consensus 359 ~~la~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~----~----~~~l~~i~~~~~li~~~~~~~~~l~~~~~~ 430 (503)
++++|||.+|++|+|.|| +++|+++++++++++.++.++. + ++.+.++.+...++.|++.+.+.+++|+|+
T Consensus 308 ~a~ardg~lP~~~~kv~k-~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~~~~~~~~~i~y~~~~~a~i~lr~~~ 386 (474)
T TIGR03813 308 LAVAKAGYLPTFFQKTNK-NGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILYLVMYLLMFASAIYLRYSQ 386 (474)
T ss_pred HHHhhcCCCCHHHhccCC-CCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999995 5999999999888755433221 2 456777778888899999999999998766
Q ss_pred CC-CcccCCCcc
Q 010690 431 PD-EVPVPSTLQ 441 (503)
Q Consensus 431 ~~-~~~~~~~~~ 441 (503)
|+ ++|+|.|.+
T Consensus 387 ~~~~rpf~~p~g 398 (474)
T TIGR03813 387 PDRPRPYRIPGG 398 (474)
T ss_pred CCCCCCeEecCC
Confidence 54 566777653
No 34
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=100.00 E-value=2e-36 Score=315.98 Aligned_cols=377 Identities=21% Similarity=0.235 Sum_probs=267.4
Q ss_pred ccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHH-HHHHHHHHHHhhhhCC-CCCccccchHHHhc
Q 010690 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIA-SAFSAFCYAELASRCP-SAGSAYHYSYICVG 125 (503)
Q Consensus 48 ~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~-~~~~a~~~~el~~~~p-~~Gg~~~~~~~~lg 125 (503)
+|+++.++.+++.++.+.+.-. .+. ....|...+.++++++++ .++.+++++||++.+| ++||.|.|+++.+|
T Consensus 3 ~~~l~~~~~~~~~~~~v~~~~~--~~~---~a~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~G 77 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVLAVYE--YPT---FATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLG 77 (507)
T ss_pred CcEeeHHHHHHHHHHHHHHHHh--hHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhccC
Confidence 4679999999999888865432 331 345688888888888887 6789999999999997 89999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHHH
Q 010690 126 EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (503)
Q Consensus 126 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~~ 205 (503)
+++||+.+|.+|+...+............+...+. .|.+ +...+......++++++++.+|+.|.|...+
T Consensus 78 ~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~----~~~~------~~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~ 147 (507)
T TIGR00910 78 ERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILK----FPAL------NEDPIIKFIAALIIFWALAFSQFGGTKRTAK 147 (507)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----Cchh------ccCcHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999987765444332222222232221 1111 1112222233456677888999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHhhhcccCCCCCC-CCCCCCCch-hhhHHHHHHHHHHhhhchHHHhhhhhhhcCCCCCc
Q 010690 206 AQAIVTTANVLA-MLFVIIAGSYLGFKTGWSGYE-LPTGYFPFG-VNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDL 282 (503)
Q Consensus 206 ~~~~~~~~~~~~-~l~~~i~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~G~~~~~~~~~e~k~P~k~i 282 (503)
++.+...+..+. .+++++.+......+.+.... +..++.|+. -.+.+..+...+|+|.|+|.+++++||+|||+|++
T Consensus 148 i~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~knP~r~~ 227 (507)
T TIGR00910 148 IAKAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELENPGRDY 227 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHccCCcccc
Confidence 998866544443 232332222221111111110 111222221 01233344456889999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCchHHH----HHHcc--hhHHHHHHHHHHHHHHHHHHHhhhcchhH
Q 010690 283 PLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSA----FASHG--MHWASYVITIGAVTALCSTLMGSILPQPR 356 (503)
Q Consensus 283 p~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~~~----~~~~~--~~~~~~l~~~~~~~~~~~s~~~~~~~~sr 356 (503)
||++..+.+++.++|.+..+.+....|+++.+...+..+. ..... .+|...++.+.++++.+++.++++++.+|
T Consensus 228 PrAi~~~~i~~~~l~~l~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~l~~~~~~i~~~sR 307 (507)
T TIGR00910 228 PLAMILLMIAAICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEWLVKVIAALIAFGVLAEIASWIVGPSR 307 (507)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHheecChhhcccchHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888888777787665543333332 22322 25777788888999999999999999999
Q ss_pred HHHHHHhCCCCchhhccccCCCCCchHHHHHHHHHHHHHHHhh---------CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010690 357 ILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM---------DVSALAGMVSVGTLLAFTMVAISVLILR 427 (503)
Q Consensus 357 ~l~~la~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~---------~~~~l~~i~~~~~li~~~~~~~~~l~~~ 427 (503)
+++++||||.+|++|+|.||+ ++|+++++++++++.++.+.. .++.+.++.+...++.|++...+++++|
T Consensus 308 ~l~~~ardg~lP~~~~k~nk~-~~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~i~Y~l~~~a~i~lr 386 (507)
T TIGR00910 308 GMFAAAQKGLLPAAFAKMNKH-EVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLIAIALTVVIYLCAYFLFFIGYFVLI 386 (507)
T ss_pred HHHHhcccCCcCHHHHhhCcC-CCcHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999955 999999999998887654321 1233556677888999999999999998
Q ss_pred cCCCC-CcccCCCc
Q 010690 428 YVPPD-EVPVPSTL 440 (503)
Q Consensus 428 ~~~~~-~~~~~~~~ 440 (503)
+|+|+ +||+|.|.
T Consensus 387 ~k~p~~~rpf~~pg 400 (507)
T TIGR00910 387 LKHPDLKRTFNIPG 400 (507)
T ss_pred HhcCCCCCCeEecC
Confidence 88765 46677654
No 35
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=100.00 E-value=9.8e-36 Score=311.45 Aligned_cols=382 Identities=17% Similarity=0.182 Sum_probs=267.7
Q ss_pred cccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHH-HHHHHHHHHHhhhhCCC-CCccccchHHHh
Q 010690 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIA-SAFSAFCYAELASRCPS-AGSAYHYSYICV 124 (503)
Q Consensus 47 l~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~-~~~~a~~~~el~~~~p~-~Gg~~~~~~~~l 124 (503)
++|++|.+++..+++++++|.+.. +. +...+|+..++++++++++ .++.+++++|+++++|+ +||.|+|+++.+
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~~~--~~--~~~~~G~~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~ 80 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFANS--PR--AFYLMGYSAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSV 80 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCCch--HH--HHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHc
Confidence 467899999999999999998753 22 2456788888888888766 57899999999999997 899999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhH
Q 010690 125 GEGVAWLIGWALILEYTIGGSAVARGISP-NLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKES 203 (503)
Q Consensus 125 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~ 203 (503)
||++|++.+|.++..+............. .....++.+. .+.+... . .........++++++++.+.+|.+|+|..
T Consensus 81 G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~-~~~~~~~~~~a~~~~~~~t~vn~~g~~~~ 157 (496)
T PRK15238 81 GPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDT-TQTWHFL-G-LNSTQVVGILAVIWMILVTFVASKGINKI 157 (496)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcch-hhhhhhh-c-ccchHHHHHHHHHHHHHHHHHHccchHHH
Confidence 99999999999887777654433322211 1122222211 1111000 0 00011112335555567889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HH-hhhcc--cCC--CCCCC--CCCCCCchhhhHHHHHHHHHHhhhchHHHhhhhh
Q 010690 204 TIAQAIVTTANVLAMLFVIIA---GS-YLGFK--TGW--SGYEL--PTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAE 273 (503)
Q Consensus 204 ~~~~~~~~~~~~~~~l~~~i~---~~-~~~~~--~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 273 (503)
.|++.+.+.+++...+++++. .+ ..... +.. .++.+ .+++ +. ..+++.++....|+|.|+|..++++|
T Consensus 158 ~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~f~G~e~~~~~a~ 235 (496)
T PRK15238 158 AKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAY-QS-PIAVLSFVVFAIFAYGGIEAVGGLVD 235 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCcc-cc-chHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999998877765443222221 11 11101 000 01110 0111 11 13467777888999999999999999
Q ss_pred hhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC-------CCchH--HHHH--------------HcchhH
Q 010690 274 EVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDP-------DTPIS--SAFA--------------SHGMHW 330 (503)
Q Consensus 274 e~k~P~k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~~~-------~~p~~--~~~~--------------~~~~~~ 330 (503)
|+|||+|++||++..+...+.++|++..+.+....|+++... ..|.. +... ...++|
T Consensus 236 E~~~p~~~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~g~~ 315 (496)
T PRK15238 236 KTENPEKNFPKGIIIAAIVISIGYSLAIFLWGVSTNWQQVLSNKSVNLGNITYVLMNNLGYTLGHALGLSPAASLTLGVW 315 (496)
T ss_pred hccCCCccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCccccchhccHHHHHHHHHHHHHHHhccchhhhhhhhHH
Confidence 999999999999999999999999999888777766554321 11221 1111 112356
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhCCCCchhhccccCCCCCchHHHHHHHHHHHHHHHhhC---------H
Q 010690 331 ASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMD---------V 401 (503)
Q Consensus 331 ~~~l~~~~~~~~~~~s~~~~~~~~sr~l~~la~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~---------~ 401 (503)
+..++.+..+++.+++..++.++.+|.++..++||.+|++|+|.||+ ++|++++++++++..++..... +
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P~~f~k~nk~-g~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f 394 (496)
T PRK15238 316 FARITGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWPKKMTKLNKN-GMPANAMWLQCIIVSVFILLVSFGGDAASAFF 394 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCccCcccHHHHhhCcC-CCcHHHHHHHHHHHHHHHHHHHhCchhHHHHH
Confidence 66677888999999999999999999999999999999999999954 9999999998877765432211 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCC
Q 010690 402 SALAGMVSVGTLLAFTMVAISVLILRYVPPDEVPVPS 438 (503)
Q Consensus 402 ~~l~~i~~~~~li~~~~~~~~~l~~~~~~~~~~~~~~ 438 (503)
+.+.++.+...++.|++++.+++++|+++..++|++.
T Consensus 395 ~~l~~l~~~~~li~y~~~~~a~i~~r~~~~~~r~~~~ 431 (496)
T PRK15238 395 NILTLMANVSMTLPYLFLAGAFPFFKKKKDIDRPFVV 431 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcee
Confidence 6788999999999999999999998875434455444
No 36
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=100.00 E-value=7.9e-39 Score=334.05 Aligned_cols=361 Identities=30% Similarity=0.476 Sum_probs=293.4
Q ss_pred HHHhhhhhhhhHHHHHHHHHHhhcCh-HHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHhcchHHHHHHHHH
Q 010690 58 AIGVGSTIGAGVYILVGTVAREHSGP-ALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWAL 136 (503)
Q Consensus 58 ~~~i~~~iG~G~~~~~~~~~~~~~G~-~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~lg~~~g~~~~~~~ 136 (503)
++++++++|+|.+...+.. ...+|+ +.++++++++++.++++.+++|+++++|++||.|.|++|.+||..|+..+|.+
T Consensus 4 ~~~ig~~ig~g~f~~~g~~-~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw~y 82 (478)
T PF00324_consen 4 MISIGGIIGTGLFLGSGFA-IAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGWAY 82 (478)
T ss_pred EeeHHHHHHHHHHHHHHHH-HHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeHHH
Confidence 4678999999999999985 567777 68999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCchh-hhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 010690 137 ILEYTIGGSAVARGISPNLAMLFGSADSLP-FFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANV 215 (503)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~~~~~~~~~~~~ 215 (503)
++.+....+......+..++.+ ....+.| .+. +. ..++.++.+++..+|+.|+|...+++.++..+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------~~-~~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~i~~ 151 (478)
T PF00324_consen 83 WLSYIAAIAAEATAAGSFLQFW-GYFPGLPSTWV---------WG-ILIAIIFILLITLLNLFGVRVSGKIEFILTIIKL 151 (478)
T ss_pred HHHHHHHHHhhhhhhhhhhccc-ccccccccccc---------cc-chhhhhhhhhhhhhhhhhhhccchHHHHHHHHhh
Confidence 9999998888777666655544 1011111 111 10 0236777888899999999999999999999999
Q ss_pred HHHHHHHHHH-HhhhcccCCCCC---CCCC---CCCCc--------hhhhHHHHHHHHHHhhhchHHHhhhhhhhcCCCC
Q 010690 216 LAMLFVIIAG-SYLGFKTGWSGY---ELPT---GYFPF--------GVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQR 280 (503)
Q Consensus 216 ~~~l~~~i~~-~~~~~~~~~~~~---~~~~---~~~~~--------~~~~~~~~~~~~~~~~~G~~~~~~~~~e~k~P~k 280 (503)
+.++.+++.+ .......+..+. ..+. +..+. ++.+++.++..++++|.|+|..+.++||.|||+|
T Consensus 152 ~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k 231 (478)
T PF00324_consen 152 IALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRK 231 (478)
T ss_pred hHhhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCchh
Confidence 9988888877 322111111111 1110 11222 3778999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC------CchHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhhcch
Q 010690 281 DLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPD------TPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQ 354 (503)
Q Consensus 281 ~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~------~p~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~ 354 (503)
++||++..+.+.+.++|++..+++...+|+++.... +|+..+.+..+++++..++.++.+.+.+++.++..+.+
T Consensus 232 ~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~~~~ 311 (478)
T PF00324_consen 232 TIPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAWIVNAGILISAFSSANASLYAA 311 (478)
T ss_pred hhhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccceecccchhhhhhhhhhhhccc
Confidence 999999999999999999999999999887764221 48888888888899999999999999999999999999
Q ss_pred hHHHHHHHhCCCCchhhccccCCCCCchHHHHHHHHHHHHHHHhhC------HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010690 355 PRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMD------VSALAGMVSVGTLLAFTMVAISVLILRY 428 (503)
Q Consensus 355 sr~l~~la~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~------~~~l~~i~~~~~li~~~~~~~~~l~~~~ 428 (503)
+|++++|+|||.+|+.+.+.++|+++|+++++++.+++.+..+... ++.+.++.+..+++.|.+.+.+.+++|+
T Consensus 312 sR~l~ama~dg~lP~~~~~~~~k~~~P~~Ai~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~r~ 391 (478)
T PF00324_consen 312 SRLLYAMARDGLLPKKFFARHPKNGVPYVAILVSSIISLLVLLLGSFSPGIVFNWLLNISTISNLIVYILINISYIRFRK 391 (478)
T ss_pred ceeehhhhhhhhhhhhhhhhhhcCCceEEEEeeehhchheeeeeccchhhHHHHHHhhhhhhhhhhHHHhhhhhhhhhhh
Confidence 9999999999999955555566669999999999888876654332 3456788888899999999999998877
Q ss_pred CC
Q 010690 429 VP 430 (503)
Q Consensus 429 ~~ 430 (503)
+.
T Consensus 392 ~~ 393 (478)
T PF00324_consen 392 KF 393 (478)
T ss_pred hh
Confidence 63
No 37
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-35 Score=289.17 Aligned_cols=393 Identities=17% Similarity=0.187 Sum_probs=309.8
Q ss_pred CCccccchhhhhhhhhhcccCCccCCCCcccccccccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHH
Q 010690 13 GDGGYGMFGCCVRTLVRRKQVDSVHTKPERSHQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIA 92 (503)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~ 92 (503)
.+.+++.+.++.|.++..+..+....++.++ +-++.+|.+|++++++++++|+|+.++.+. |+..|||++++|||++
T Consensus 27 ~Gl~fT~r~~f~Qfr~l~~~~k~~~~~~~~~--~~~~~vS~FqAl~~sla~~VGtGNIaGVAt-AI~~GGPGAvFWMWi~ 103 (452)
T COG1115 27 TGLYFTIRLGFVQFRHLKEMFKLLFGSRKGK--AGKGGVSSFQALMTSLAARVGTGNIAGVAT-AIALGGPGAVFWMWIV 103 (452)
T ss_pred HHHHHhheeCceeeehHHHHHHHHhcCcccC--CCCCCcChHHHHHHHHHhccCcchHHHHHH-HHHcCCCccHHHHHHH
Confidence 3557788888889888887766655444332 345789999999999999999999999997 7899999999999999
Q ss_pred HHHHHHHHHHHHHhhhhCCCC-------CccccchHHHhcc-hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCC
Q 010690 93 GIASAFSAFCYAELASRCPSA-------GSAYHYSYICVGE-GVAWLIGWALILEYT-IGGSAVARGISPNLAMLFGSAD 163 (503)
Q Consensus 93 ~l~~~~~a~~~~el~~~~p~~-------Gg~~~~~~~~lg~-~~g~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~ 163 (503)
+++++.+.++++.|+++|++. ||+.+|+++.+|. +.|.+++....+++. +.+.+|++.+++.++..++
T Consensus 104 Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~yYi~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af~--- 180 (452)
T COG1115 104 ALFGMATKFAESTLAQKYRVKDKDGEYRGGPAYYIEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAFG--- 180 (452)
T ss_pred HHHHHHHHHHHHHHHhheeEeCCCCCCcCChHHHHHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhcC---
Confidence 999999999999999999942 8999999999985 477777766777766 4788999999999988887
Q ss_pred chhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCC--CC
Q 010690 164 SLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYEL--PT 241 (503)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~--~~ 241 (503)
.|.+.. ++++.+++..+.+.|+|++.++...++|+|.+.+++.++..+..+.+..+..... .+
T Consensus 181 -~~~~~~--------------gi~la~l~~~VI~GGi~rIa~v~~~vVPfMA~~Yi~~~~~Ii~~n~~~iP~~i~~If~s 245 (452)
T COG1115 181 -IPPLVT--------------GIVLALLVALVIFGGIKRIAKVSSKVVPFMAILYVLVALVIIVLNISQIPAVIALIFSS 245 (452)
T ss_pred -CcHHHH--------------HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHHHHh
Confidence 666553 8899999999999999999999999999999999999888877665443211100 01
Q ss_pred CCCCc----hh------hhHHHHHHHHHHhh---hchHHHhhhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcc
Q 010690 242 GYFPF----GV------NGMLAGSATVFFAF---IGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLV 308 (503)
Q Consensus 242 ~~~~~----~~------~~~~~~~~~~~~~~---~G~~~~~~~~~e~k~P~k~ip~~~~~~~~~~~v~y~l~~~~~~~~~ 308 (503)
.+.+. ++ ..+..|+..+.|+. +|+.+.++.+.+++||.||.-.+++..++++.++|.++.++++...
T Consensus 246 AF~~~aa~GG~~G~~v~~aI~~Gv~RGlfSNEAGmGsap~aaAaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg 325 (452)
T COG1115 246 AFGPKAAAGGFAGYTVAQAIRNGVKRGLFSNEAGMGSAPIAAAAAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSG 325 (452)
T ss_pred cCCchhhhhhhhhHHHHHHHHHHHHHHhhcccccCCcchhHHHhhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcC
Confidence 11111 11 13566777777776 8999999999999999999999999999999999999999999887
Q ss_pred cCCCC---CCCCchHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhCCCCchhhccccCCCCCchHHH
Q 010690 309 PYYEM---DPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKST 385 (503)
Q Consensus 309 ~~~~~---~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~sr~l~~la~d~~lP~~~~~~~~~~~~P~~a~ 385 (503)
.++.. +....+..+++.+.++|+..++++.++++.|+|+++++|+++|++..+.+++ +.+.-++.-+.+.
T Consensus 326 ~~~~~~~~~G~~ltq~A~~~~~g~~G~~fv~i~l~lFafTTIlg~yyyge~~~~fl~~~k-------~~~~~~r~~~l~~ 398 (452)
T COG1115 326 AWNSGGGLSGAALTQAAFSSHLGSWGSYFVAIALFLFAFTTILGWYYYGEKNIEFLFGSK-------KAILLYRLIVLAM 398 (452)
T ss_pred CcccCCCCchHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-------hHHHHHHHHHHHH
Confidence 65433 3334567788888889999999999999999999999999999999997541 1111112222222
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 010690 386 IVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPDE 433 (503)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~l~~i~~~~~li~~~~~~~~~l~~~~~~~~~ 433 (503)
+..+.+..+-..|...|..+.++.++|+++.+++.-..+...+++..+
T Consensus 399 v~~Ga~~~l~~vW~laD~~~glMai~NLIal~lL~~vv~~~~kdy~~q 446 (452)
T COG1115 399 VFLGAVLSLDLVWNLADLFMGLMAIPNLIALLLLSKVVIALLKDYFAQ 446 (452)
T ss_pred HHHhccccHHHHHHHHHHhchHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 233333333445566788999999999999999988888887766433
No 38
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=100.00 E-value=2.5e-31 Score=262.86 Aligned_cols=357 Identities=17% Similarity=0.223 Sum_probs=275.4
Q ss_pred ccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhhhhCCCC-------Cccccch
Q 010690 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSA-------GSAYHYS 120 (503)
Q Consensus 48 ~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~~~~a~~~~el~~~~p~~-------Gg~~~~~ 120 (503)
++++|.+|++++++++++|+|+.++.+. |+..|||++++|||+++++.+.+.++++.|+++|++. ||+.+|+
T Consensus 16 ~g~iS~fqA~~~ala~~vG~GNI~GVa~-AI~~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~yyi 94 (416)
T PF01235_consen 16 EGGISPFQALCTALAGTVGTGNIAGVAT-AIAIGGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMYYI 94 (416)
T ss_pred CCCcChHHHHHHHHHhccCcchHHHHHH-HHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHHHH
Confidence 3579999999999999999999999987 7899999999999999999999999999999999953 8999999
Q ss_pred HHHhcch-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhh
Q 010690 121 YICVGEG-VAWLIGWALILEYTIG-GSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCV 198 (503)
Q Consensus 121 ~~~lg~~-~g~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~ 198 (503)
+|.+|.+ ++.+.+.+.+.++... +..+.+..++.++..++ .|.+.. ++++.+++.++.+.
T Consensus 95 ~~gl~~k~la~~fai~~~~~~~~~~~~~Q~nsi~~~~~~~f~----i~~~~~--------------gi~l~~l~~~vi~G 156 (416)
T PF01235_consen 95 EKGLGSKWLAILFAIFLIIAFGIGFNMVQANSIADALSSAFG----IPPWIT--------------GIILAILVALVIFG 156 (416)
T ss_pred HHHhccchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcc----ccHHHH--------------HHHHHHHHHHHHHc
Confidence 9999865 5666666655555444 56777777777776665 555543 78888899999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCC--CCCCCCc----hhhh------HHHHHHHHHHhh---h
Q 010690 199 GIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYEL--PTGYFPF----GVNG------MLAGSATVFFAF---I 263 (503)
Q Consensus 199 g~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~--~~~~~~~----~~~~------~~~~~~~~~~~~---~ 263 (503)
|+|++.++...++|+|.+.+++.++..+..+.++-+..+.. .+.+.+. +..| +-.|+..+.|+. .
T Consensus 157 GikrI~~v~~~lVP~Ma~~Yi~~~l~ii~~n~~~ip~~~~~If~~AF~~~aa~GG~~G~~i~~ai~~Gv~Rg~fSNEAG~ 236 (416)
T PF01235_consen 157 GIKRIAKVSEKLVPFMAILYILGGLIIIIINIDQIPAAFSLIFSSAFTPKAAFGGFAGSTIMMAIRQGVARGLFSNEAGL 236 (416)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHcCCccchhhHHHHHHHHHHHHhhhhhhccCCCCC
Confidence 99999999999999999999999988877654442211100 0111111 2222 234566667766 8
Q ss_pred chHHHhhhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccCCC---CCCCCchHHHHHHcchhHHHHHHHHHHH
Q 010690 264 GFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYE---MDPDTPISSAFASHGMHWASYVITIGAV 340 (503)
Q Consensus 264 G~~~~~~~~~e~k~P~k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~---~~~~~p~~~~~~~~~~~~~~~l~~~~~~ 340 (503)
|..+.+|.+.|.+||.||.-.+++..++++.++|.++.++++....+.. .+.......++++..++|..+++.++++
T Consensus 237 Gsa~~a~a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG~~~~~~~~~g~~l~~~Af~~~~g~~g~~~v~i~l~ 316 (416)
T PF01235_consen 237 GSAPIAHAAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTGVWSWGSGLEGAALTQAAFSTVLGSWGPYFVAIALF 316 (416)
T ss_pred ChhHHHHHHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998765322 2223345678888788999999999999
Q ss_pred HHHHHHHHhhhcchhHHHHHHH-hCCCCchhhccccCCCCCchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Q 010690 341 TALCSTLMGSILPQPRILMAMA-RDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMV 419 (503)
Q Consensus 341 ~~~~~s~~~~~~~~sr~l~~la-~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~i~~~~~li~~~~~ 419 (503)
++.|+|++++++++++.+..+. ++ |....++.-+.++++.+.+.-+-.+|...|..+.++.++|+++..++
T Consensus 317 lFafTTilg~~~yge~~~~yl~~~~--------~~~~~~ri~~i~~~~~G~~~~~~~vW~~~Di~~~lmai~Nlial~lL 388 (416)
T PF01235_consen 317 LFAFTTILGWYYYGEKCAEYLFGGK--------KAIWIYRILFIAMVFIGAVIDLDLVWDLADIANGLMAIPNLIALLLL 388 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCc--------eEEEeeeehhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999997 22 22222233333333333333334455667888999999999999888
Q ss_pred HHHHHHHhcCCC
Q 010690 420 AISVLILRYVPP 431 (503)
Q Consensus 420 ~~~~l~~~~~~~ 431 (503)
.--..+..+++.
T Consensus 389 ~~~v~~~~~dy~ 400 (416)
T PF01235_consen 389 SKEVIKELKDYF 400 (416)
T ss_pred HHHHHHHHHHHH
Confidence 877776665543
No 39
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=99.97 E-value=6.3e-29 Score=247.28 Aligned_cols=383 Identities=14% Similarity=0.145 Sum_probs=288.1
Q ss_pred CccccchhhhhhhhhhcccCCccCCCCcccccccccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHH
Q 010690 14 DGGYGMFGCCVRTLVRRKQVDSVHTKPERSHQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAG 93 (503)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~ 93 (503)
+.+++.+.++.|.++..+..+....+++ ++ .++++|.+|++++++++++|+|+..+... ++..+||++++|||+++
T Consensus 13 Gl~~Ti~~~f~Q~r~~~~~~~~~~~~~~--~~-~~g~iS~fqA~~~ala~~VG~GnI~Gva~-Ai~~GGpGAvFWMWI~a 88 (425)
T TIGR00835 13 GLFFTIRLGFVQFRYLPAAFRLLFGKRK--EQ-GKGGVSSFQALFTSLAARVGIGNIVGVAT-AIAIGGPGAVFWMWVTA 88 (425)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCC--CC-CCCCccHHHHHHHHHHHHHhhhHHHHHHH-HHHhcCCCchHHHHHHH
Confidence 4567788888988888777655433210 11 13469999999999999999999998887 58999999999999999
Q ss_pred HHHHHHHHHHHHhhhhCCCC-------CccccchHHHhc-chHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCc
Q 010690 94 IASAFSAFCYAELASRCPSA-------GSAYHYSYICVG-EGVAWLIGWALILEY-TIGGSAVARGISPNLAMLFGSADS 164 (503)
Q Consensus 94 l~~~~~a~~~~el~~~~p~~-------Gg~~~~~~~~lg-~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~ 164 (503)
++++.+.++++.++.+|++. ||+.+|.++.++ |++|.+.+.. .+.+ ...+..+.+..++.++..++
T Consensus 89 llGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~~---- 163 (425)
T TIGR00835 89 FIGMATKFVESTLAQKYRERDADGVFRGGPMYYIKKGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAFN---- 163 (425)
T ss_pred HHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHHHHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHcC----
Confidence 99999999999999999841 566699999877 6678887777 4444 44567888888888775553
Q ss_pred hhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCC--CCC
Q 010690 165 LPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYEL--PTG 242 (503)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~--~~~ 242 (503)
.|.|. .++++++++..+...|+|++.++...+.+++.+.++...+.....+..+-++.+.. .+.
T Consensus 164 ~~~~v--------------~~i~l~~l~~~vi~GGik~Ia~v~~~lvP~m~~~Y~~~~l~ii~~n~~~lp~~~~~If~~A 229 (425)
T TIGR00835 164 VPKLV--------------TGIVLTVLTALIIFGGLKRIAKISSVVVPFMALLYVIMALYIIIMNIEQLPAVISLIFRSA 229 (425)
T ss_pred CcHHH--------------HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 45553 37788888888888999999999999999999999777665554332221110000 011
Q ss_pred CCCc----hhhh------HHHHHHHHHHhh---hchHHHhhhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccc
Q 010690 243 YFPF----GVNG------MLAGSATVFFAF---IGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVP 309 (503)
Q Consensus 243 ~~~~----~~~~------~~~~~~~~~~~~---~G~~~~~~~~~e~k~P~k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~ 309 (503)
+.++ +..| +-.|+..+.|+. .|..+.+|.+.|++||.||.-.+++..++++.++|.++.++++....
T Consensus 230 F~~~a~~GG~~G~~v~~ai~~Gv~Rg~fSNEAG~Gsa~~a~a~a~~~hP~~QGl~~~~~vfiDTivvCt~Talvil~tg~ 309 (425)
T TIGR00835 230 FGGDAAAGGFAGSTVAQAIMIGVKRGLFSNEAGMGSAPIAAAAAQVSHPVRQGLVQMLGVFIDTMIVCTATALVILLSGV 309 (425)
T ss_pred CCchhhHhHHHHHHHHHHHHHhhHHHHhccccccCcHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 1111 1222 334666677776 89999999999999999999999999999999999999998887755
Q ss_pred CC---CCCCCCchHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhCCCCchhhccccCCCCCchHHHH
Q 010690 310 YY---EMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTI 386 (503)
Q Consensus 310 ~~---~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~sr~l~~la~d~~lP~~~~~~~~~~~~P~~a~~ 386 (503)
++ ..+......++++...++|..+++.+.++++.|+|+++++|++++.+..+.++ |..+.++..+...+
T Consensus 310 ~~~~~~~~g~~lt~~af~~~~g~~g~~~v~i~~~lFaftTii~~~yyge~~~~yl~~~--------~~~~~~r~~~~~~~ 381 (425)
T TIGR00835 310 WNNGEGLSGAQLTQQALSYGLGSFGAVFVAVALFLFAFSTIIGWYYYGEKNAEFLKGN--------KKVKLYRLVFLAAV 381 (425)
T ss_pred cCCCCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CccceeeehhhHHH
Confidence 44 11222344567777676789999999999999999999999999999999654 22223455555666
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010690 387 VTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILR 427 (503)
Q Consensus 387 ~~~~~~~~~~~~~~~~~l~~i~~~~~li~~~~~~~~~l~~~ 427 (503)
+.+.+..+-..|...|..+.+++++|+++..++.--..+..
T Consensus 382 ~~g~~~~~~~vw~~~D~~~~lm~i~Nlial~~L~~~v~~~~ 422 (425)
T TIGR00835 382 FVGAFLSLDLVWNLADLSMGLMAIPNLIAILLLRKVVYELT 422 (425)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666656667777889999999999999887765554443
No 40
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.96 E-value=1.8e-27 Score=237.76 Aligned_cols=378 Identities=18% Similarity=0.221 Sum_probs=295.1
Q ss_pred ccCHHHHHHHHhhh-hhhhhHHHHHHHHHHhhcChH-HHHHHHHHHHHHHHHHHHHHHhhhhCC-CCCccccchHHHhcc
Q 010690 50 NLTIPHLVAIGVGS-TIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCP-SAGSAYHYSYICVGE 126 (503)
Q Consensus 50 ~ls~~~~~~~~i~~-~iG~G~~~~~~~~~~~~~G~~-~i~~~il~~l~~~~~a~~~~el~~~~p-~~Gg~~~~~~~~lg~ 126 (503)
++|.++..+.-.+. +...=.|...+.+ ++.+|.. .+.-++++-.+.+++.++.+.+++.-- +.||.|+.++|.+||
T Consensus 66 kLgTf~GvfvPtaLsmfSiLlFLR~gfI-vG~aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GGGaYymISRsLGp 144 (945)
T KOG1288|consen 66 KLGTFEGVFVPTALSMFSILLFLRFGFI-VGQAGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGGGAYYMISRSLGP 144 (945)
T ss_pred cccceeeEechhHHHHHHHHHHHHHhhh-hcchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecCceEEEEEcccCc
Confidence 89998887764433 4555566666664 5666765 555566677777888888888888765 368999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHHHH
Q 010690 127 GVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIA 206 (503)
Q Consensus 127 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~~~ 206 (503)
.+|.-.|.+..++.++.+++.+.++.+.+-..|+.....+. ....+|...||..+-+..+..++..+.+.|-..++|.
T Consensus 145 EfGGSIGllFf~anV~~~am~isG~vE~il~nfG~~a~g~s--g~~~lP~g~ww~fly~t~vl~l~~~vc~lGsalfAka 222 (945)
T KOG1288|consen 145 EFGGSIGLLFFVANVFNCAMNISGFVEPILDNFGKEAQGAS--GSQFLPDGYWWRFLYTTLVLALCLIVCLLGSALFAKA 222 (945)
T ss_pred ccCCeeeehhhHHHHhcchhhhhhhhHHHHHhcCccccCCc--ccccCCCCcchhhHHHHHHHHHHHHHHHhhHHHHHhh
Confidence 99999999999999999999999999999998885443222 2356788899988888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCC------------------CCCCC---C--------CCCCCchhhhHHHHHHH
Q 010690 207 QAIVTTANVLAMLFVIIAGSYLGFKTGW------------------SGYEL---P--------TGYFPFGVNGMLAGSAT 257 (503)
Q Consensus 207 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~------------------~~~~~---~--------~~~~~~~~~~~~~~~~~ 257 (503)
..++..+..+.+.-+.+-.+..+..+.. .+++. . .++...+-..+-..+.+
T Consensus 223 s~i~f~~is~s~~si~iS~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~~~FgV 302 (945)
T KOG1288|consen 223 SNILFVVISVSLFSIPISFIFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFASTFGV 302 (945)
T ss_pred hhhhhhHHHHHHhhhhheeEEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehhhhhee
Confidence 8877666555544443332222111111 00000 0 00111122335556677
Q ss_pred HHHhhhchHHHhhhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCchHHHHHHcchhHHHHHHHH
Q 010690 258 VFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITI 337 (503)
Q Consensus 258 ~~~~~~G~~~~~~~~~e~k~P~k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~ 337 (503)
.+..-+|..+.++|++|.|+|+|.+|+|.+.++..+.++|+++.+.....+|+..+..+..+....+.. | +++.+
T Consensus 303 ~F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~~r~~Lq~dy~v~~~isl~--p---~fi~i 377 (945)
T KOG1288|consen 303 FFPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCTVPRTLLQNDYDVMMHISLH--P---PFILI 377 (945)
T ss_pred eeccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhccCcchHHhhhchhheeecccc--c---hHHHH
Confidence 788889999999999999999999999999999999999999999999999987776665444333332 2 67888
Q ss_pred HHHHHHHHHHHhhhcchhHHHHHHHhCCCCc--hhhccccCCCCCchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Q 010690 338 GAVTALCSTLMGSILPQPRILMAMARDGLLP--PFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLA 415 (503)
Q Consensus 338 ~~~~~~~~s~~~~~~~~sr~l~~la~d~~lP--~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~i~~~~~li~ 415 (503)
+++...+.|.+..+.+++|++.++|||+++| ..|+|.....+.|+.++.++..++-+..+++.+|.++.+.++.++++
T Consensus 378 Gi~sttlfss~s~liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~av~vtw~lvqlvll~g~~N~iA~~it~~FLlt 457 (945)
T KOG1288|consen 378 GILSTTLFSSMSGLIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVTWLLVQLVLLWGDINKIASMITMTFLLT 457 (945)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhhcccchhhheeeeccccCCCceeeeeHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999 77888777778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC-CCCCcc
Q 010690 416 FTMVAISVLILRYV-PPDEVP 435 (503)
Q Consensus 416 ~~~~~~~~l~~~~~-~~~~~~ 435 (503)
|..++++++.++.. .|+.||
T Consensus 458 y~~vNLacl~LeissAPNFRP 478 (945)
T KOG1288|consen 458 YGAVNLACLLLEISSAPNFRP 478 (945)
T ss_pred HHHHHHHHHHhhhccCCCCCc
Confidence 99999999988764 456665
No 41
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.95 E-value=1.7e-25 Score=227.04 Aligned_cols=358 Identities=16% Similarity=0.075 Sum_probs=261.4
Q ss_pred HHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHhcchHHHHHHHHHH
Q 010690 58 AIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALI 137 (503)
Q Consensus 58 ~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~lg~~~g~~~~~~~~ 137 (503)
++.+++++|+|++..+...+ +.+++.+++.++++++++...+++++|+++++|++||.|.|.++.+||..|++.+|.++
T Consensus 4 ~lv~gt~IGaGIl~lP~~~a-~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~~ 82 (381)
T TIGR00837 4 LIIAGTTIGAGMLALPTSTA-GAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSLL 82 (381)
T ss_pred EEeehhhHhHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHHH
Confidence 45678999999999998853 55666677788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 010690 138 LEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLA 217 (503)
Q Consensus 138 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~~~~~~~~~~~~~~ 217 (503)
+.+...+.++..+.++++...+..... + .+......+++++++..+++.|.|...|++.+++..+++.
T Consensus 83 ~~~~~~~~ay~~~~~~~l~~~~~~~~~----------~--~~~~~~~~~~~~~v~~~l~~~G~~~~~~v~~i~~~~~l~~ 150 (381)
T TIGR00837 83 FVLYILTYAYISGGGSILSRLIGEYFG----------F--PWSARAIVLIFTVLFGSFVWLSTSAVDRITRVLIFGKIIA 150 (381)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHhcC----------C--CccHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Confidence 988888888888888888777642110 0 0111223566777788999999999999999999999888
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCCCchhhhHHHHHHHHHHhhhchHHHhhhhhhhcCCCCCchhHHHHHHHHHHHHH
Q 010690 218 MLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALY 297 (503)
Q Consensus 218 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~k~P~k~ip~~~~~~~~~~~v~y 297 (503)
++++++.+..+...+.+... +..+.++.++..++...+++|...+....+.+|.++|+|++||++..+..++.++|
T Consensus 151 l~~~ii~~~~~~~~~~~~~~----~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY 226 (381)
T TIGR00837 151 FALVFSGLLPHVKGDLLLDV----ALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLY 226 (381)
T ss_pred HHHHHHHHHhhccHHHHhcC----ccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence 87777665543221111111 00122445667777777888833345778889998778999999999999999999
Q ss_pred HHHHHHHHhcccCCCCC-------CCCchHHHHHHc-chhHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhCCCCch
Q 010690 298 MLVSIVIVGLVPYYEMD-------PDTPISSAFASH-GMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPP 369 (503)
Q Consensus 298 ~l~~~~~~~~~~~~~~~-------~~~p~~~~~~~~-~~~~~~~l~~~~~~~~~~~s~~~~~~~~sr~l~~la~d~~lP~ 369 (503)
++...+..+..|++++. +.++..+.++.. +.+|...++.+..+++..+|..+...+.++.+..+
T Consensus 227 ~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~-------- 298 (381)
T TIGR00837 227 ILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADL-------- 298 (381)
T ss_pred HHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 99999999999877642 124555666653 56778899999999999999999776666554443
Q ss_pred hhccccCCCCCchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCCCCCcccCCCcchh
Q 010690 370 FFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVL---ILRYVPPDEVPVPSTLQSS 443 (503)
Q Consensus 370 ~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~i~~~~~li~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~ 443 (503)
+++.+++.+ |..+.+++.+...++........+..+...+....+....+..+ +.|+|+++ .++|.+..+.
T Consensus 299 -~~~~~~~~~-~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G~~~~~~~~~~p~l~~~~~r~~~~~-~~~~~~~~~~ 372 (381)
T TIGR00837 299 -FKFDDSKKG-RFKTGLLTFLPPLVFALFYPEGFLYAIGYAGLAATIWAVIIPALLAWKARKKFPN-AGYRVWGGNK 372 (381)
T ss_pred -hCCCcccCC-CchhhhhhHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCccccCChH
Confidence 444444423 66777788888877776665555566666665555554544443 33555443 4677666553
No 42
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=99.94 E-value=3.3e-26 Score=227.45 Aligned_cols=370 Identities=17% Similarity=0.254 Sum_probs=301.7
Q ss_pred cccCHHHHHHH-HhhhhhhhhHHHHHHHHHHhhcChH-HHHHHHHHHHHHHHHHHHHHHhhhhCCC-CCccccchHHHhc
Q 010690 49 KNLTIPHLVAI-GVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPS-AGSAYHYSYICVG 125 (503)
Q Consensus 49 r~ls~~~~~~~-~i~~~iG~G~~~~~~~~~~~~~G~~-~i~~~il~~l~~~~~a~~~~el~~~~p~-~Gg~~~~~~~~lg 125 (503)
-++++|+.++. ++-++.|.-.|...+++ .+++|.+ .++...++..++.+++++.+.++++... +||.|+.++|.+|
T Consensus 28 v~fg~~~gv~~~cmlni~gv~lflrl~wi-vgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yflis~slg 106 (643)
T KOG2083|consen 28 VLFGWWDGVFVRCMLNIFGVILFLRLGWI-VGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLISRSLG 106 (643)
T ss_pred eEEeeeehhhhhhhHHHHHHHHhhhhhhe-eecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEEEeccc
Confidence 46999999776 77888999999999996 5777876 8888888899999999999999999984 7999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHHH
Q 010690 126 EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (503)
Q Consensus 126 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~~ 205 (503)
+.+|...|.+|.|+..++++.++.++++++..++..+. .+.++.++.+.++++.+++..|++|..|
T Consensus 107 ~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s--------------~~~i~gi~~vt~~ill~i~~ag~~w~~k 172 (643)
T KOG2083|consen 107 PEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETES--------------KEMIDGIGSVTVLILLAINVAGVEWEAK 172 (643)
T ss_pred ccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcc--------------HHHhcchhHHHHHHHHHhhhccchhHHH
Confidence 99999999999999999999999999999999986432 2445557899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc--ccCCCCCCC---CCCCCCc--hhhhHHHHHHHHHHhhhchHHHhhhhhhhcCC
Q 010690 206 AQAIVTTANVLAMLFVIIAGSYLGF--KTGWSGYEL---PTGYFPF--GVNGMLAGSATVFFAFIGFDAVASTAEEVKNP 278 (503)
Q Consensus 206 ~~~~~~~~~~~~~l~~~i~~~~~~~--~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~G~~~~~~~~~e~k~P 278 (503)
+|.++..+.++.+....+..+.... +.++..+++ ..+..|. .-..++..+.+.+.+.+|.-+.++++++.|+|
T Consensus 173 ~q~~ll~il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL~~P 252 (643)
T KOG2083|consen 173 LQIVLLLILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGDLKDP 252 (643)
T ss_pred HHHHHHHHHHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCCCCCc
Confidence 9999999998888888877765322 112222111 1122221 11357778888999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCC-------CCC--chHHHHHHcc-hhHHHHHHHHHHHHHHHHHHH
Q 010690 279 QRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD-------PDT--PISSAFASHG-MHWASYVITIGAVTALCSTLM 348 (503)
Q Consensus 279 ~k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~~-------~~~--p~~~~~~~~~-~~~~~~l~~~~~~~~~~~s~~ 348 (503)
++++|+|.+.+...+..+|+.+...+....-++... .+. .+.+.++... -...+..+..+++....++..
T Consensus 253 q~~IP~GaL~Ai~vst~~yl~~i~~~Ga~~~r~~~~~~~~~~~~~c~~gl~~~~qv~smvS~~~Pl~~AGi~~a~LSsal 332 (643)
T KOG2083|consen 253 QKAIPLGALLAIGVSTLLYLIFIADLGATPVRDALENWNDTSTKSCPIGLTNYLQVMSMVSTFGPLITAGILAAELSSAL 332 (643)
T ss_pred hhhcccchhhhhhhhhhhhhhhhhhcccHHHHHHhccchhhccCCCccchHHHHHHHHhHhhcccchhhHHHHHHHHHHH
Confidence 999999999999999999998887776554433321 111 1222221111 112335778889999999999
Q ss_pred hhhcchhHHHHHHHhCCCCc--hhhccccCCCCCchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010690 349 GSILPQPRILMAMARDGLLP--PFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLIL 426 (503)
Q Consensus 349 ~~~~~~sr~l~~la~d~~lP--~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~i~~~~~li~~~~~~~~~l~~ 426 (503)
+.+.+++++++++.+|+..| .+++|..++++.|++..++....+..++.++..+.+.++.+...+.+|+++..+++..
T Consensus 333 sslVsap~V~QaL~kd~~yp~i~~f~KgyGkn~~Plrg~~l~~~~av~fi~igeln~iapiis~FfL~syAlinf~~f~a 412 (643)
T KOG2083|consen 333 SSLVSAPKVLQALCKDSLYPSILFFAKGYGKNKEPLRGYLLTFLTAVSFIAIGELNIIAPIISNFFLLSYALINFSCFHA 412 (643)
T ss_pred HHHHhhhHHHHHHHhcCCCccHHHHHccCCccccchHHHHHHHHhHheeEEecccceeccchhhhhhhhhhccchhhhhh
Confidence 99999999999999999999 8899999999999999999999999888899999999999999999999999999977
Q ss_pred hcCCCCC
Q 010690 427 RYVPPDE 433 (503)
Q Consensus 427 ~~~~~~~ 433 (503)
+...++.
T Consensus 413 Sl~~s~~ 419 (643)
T KOG2083|consen 413 SLAISEG 419 (643)
T ss_pred hhccccc
Confidence 6655544
No 43
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=99.93 E-value=2e-24 Score=217.66 Aligned_cols=383 Identities=17% Similarity=0.247 Sum_probs=282.4
Q ss_pred cccCHHHHHHH-HhhhhhhhhHHHHHHHHHHhhcChH-HHHHHHHHHHHHHHHHHHHHHhhhhCCC-CCccccchHHHhc
Q 010690 49 KNLTIPHLVAI-GVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPS-AGSAYHYSYICVG 125 (503)
Q Consensus 49 r~ls~~~~~~~-~i~~~iG~G~~~~~~~~~~~~~G~~-~i~~~il~~l~~~~~a~~~~el~~~~p~-~Gg~~~~~~~~lg 125 (503)
-+++.+..+.+ ++-++.|.-.|...-++ .+.+|.+ ......++++..++++.+++.++..--. +||.|+.++|.+|
T Consensus 112 ~~mGt~mGVyLPclQnIlGVilFiRLtWv-VG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmISRsLG 190 (1075)
T KOG2082|consen 112 ARMGTLMGVYLPCLQNILGVILFIRLTWV-VGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMISRSLG 190 (1075)
T ss_pred cccceeeeeeHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEecccC
Confidence 35666666555 77889999999998885 6777876 7777888899999999999999987653 7999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHH
Q 010690 126 EGVAWLIGWALILEYTIGGSAVARGISPNLAM-LFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKEST 204 (503)
Q Consensus 126 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~ 204 (503)
|.+|..+|.++.++-.++.++++.+..+.+-. ++.....+..--..........-.++-+.+++++.+++.+.|+|.+-
T Consensus 191 PEFGgAVGlcFYLgtT~AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~GVK~Vn 270 (1075)
T KOG2082|consen 191 PEFGGAVGLCFYLGTTVAAAMYILGAVEIFLTYIFPAAAIFGAEDAHDEAAAMLNNLRVYGTVFLILMALIVFVGVKFVN 270 (1075)
T ss_pred ccccceeeehhhhhhHHHHHHHHHhHHHHHHHHHccHhhhcCccccccchhhhhcceehHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887554 33211100000000001111223345588999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc-------------------------------c---------------------
Q 010690 205 IAQAIVTTANVLAMLFVIIAGSYLGFK-------------------------------T--------------------- 232 (503)
Q Consensus 205 ~~~~~~~~~~~~~~l~~~i~~~~~~~~-------------------------------~--------------------- 232 (503)
++..+...+.++.++.+.+.++-..+. +
T Consensus 271 k~A~vfL~CVILSIlaiyaG~i~~~~~~~~~~vC~lgnr~L~~~~~d~c~k~~~~~~~~~~~~L~~~fC~~~~~~~~c~~ 350 (1075)
T KOG2082|consen 271 KFAPVFLACVILSILAIYAGGIKSIFDPPGFPVCMLGNRLLSSSIFDNCSKTETVDNDNVTSFLWGLFCNSNNDSATCDE 350 (1075)
T ss_pred HhhHHHHHHHHHHHHHHHHhhhhhccCCCCCeeEEecceeccccccccchhhhccccccHHHHHHHhhCCCCCCCccccc
Confidence 999888887777776666554421000 0
Q ss_pred -----------C-------------CCCCCCCCCCC---------------C----chhhhHHHHHHHHHHhhhchHHHh
Q 010690 233 -----------G-------------WSGYELPTGYF---------------P----FGVNGMLAGSATVFFAFIGFDAVA 269 (503)
Q Consensus 233 -----------~-------------~~~~~~~~~~~---------------~----~~~~~~~~~~~~~~~~~~G~~~~~ 269 (503)
+ |+.+-..+.+. | +--.++..-+...|.+.+|..+..
T Consensus 351 y~~~nnvt~i~GipG~a~g~~~eNlws~Ylekg~~v~~g~~~~~~~~~~~~~~V~~Di~tSFtlLvgIfFPsVTGImaGS 430 (1075)
T KOG2082|consen 351 YFSKNNVTEIQGIPGLASGVFKENLWSAYLEKGEIVEYGVPSADIADSSGHPYVVQDITTSFTLLVGIFFPSVTGIMAGS 430 (1075)
T ss_pred ccccccceeecCCcchhhhhhhhhhhHhhhcccccccCCCCCCCcccccCCCceeecchhhHHHHHHhhccccceeeecC
Confidence 0 00000000000 0 001124444556788899999999
Q ss_pred hhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCchHHHHHH-----cchhHHHHHHHHHHHHHHH
Q 010690 270 STAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFAS-----HGMHWASYVITIGAVTALC 344 (503)
Q Consensus 270 ~~~~e~k~P~k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~-----~~~~~~~~l~~~~~~~~~~ 344 (503)
+.++|+|||+|.+|.|.+.+.+.+..+|+...+...+++....+.+. +.+.+.. ...-.-.+++.++.+++.+
T Consensus 431 NrSGDLkDaQkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDK--fG~sv~g~lVva~laWPsPwVi~IGsFlST~ 508 (1075)
T KOG2082|consen 431 NRSGDLKDAQKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDK--FGQSVGGNLVVATLAWPSPWVIVIGSFLSTC 508 (1075)
T ss_pred CCCccccchhhcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhh--hhhhccCcEEEEEecCCCceeeehhHHHHHh
Confidence 99999999999999999999999999999888888877663322211 1111110 0001123688899999999
Q ss_pred HHHHhhhcchhHHHHHHHhCCCCc--hhhccccCCCCCchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHH
Q 010690 345 STLMGSILPQPRILMAMARDGLLP--PFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAIS 422 (503)
Q Consensus 345 ~s~~~~~~~~sr~l~~la~d~~lP--~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~i~~~~~li~~~~~~~~ 422 (503)
+..+-.+.+++|.++++|||+++| ..|++.+++ +.|..|++++.+++-.-+++++++.++++.++.+++.|.+++++
T Consensus 509 GAgLQsLtgAPRLLQAIAkD~IiPfL~~F~~~~~n-gEPt~aLlLT~~Ice~gILigslD~iApilsmFFLMCY~fVNLa 587 (1075)
T KOG2082|consen 509 GAGLQSLTGAPRLLQAIAKDDIIPFLAPFGHGKAN-GEPTWALLLTAIICECGILIGSLDLIAPILSMFFLMCYLFVNLA 587 (1075)
T ss_pred HHHHhhhcCcHHHHHHHhhcCccchhhhhccccCC-CCccHHHHHHHHHHHhhheeechhHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999 999998766 89999999999999999999999999999999999999999999
Q ss_pred HHHH-hcCCCCCcc
Q 010690 423 VLIL-RYVPPDEVP 435 (503)
Q Consensus 423 ~l~~-~~~~~~~~~ 435 (503)
+... ..|.|+.||
T Consensus 588 CavqtLLrtPnWRP 601 (1075)
T KOG2082|consen 588 CAVQTLLRTPNWRP 601 (1075)
T ss_pred HHHHHHhcCCCCCc
Confidence 8755 334566555
No 44
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.89 E-value=2.6e-20 Score=187.63 Aligned_cols=289 Identities=14% Similarity=0.161 Sum_probs=225.0
Q ss_pred ccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHhcchHH
Q 010690 50 NLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVA 129 (503)
Q Consensus 50 ~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~lg~~~g 129 (503)
++|.+|.+++.++.++|+|++..|+.. .+.+|..+|++++++++++.+.+++++|+++++|+. +.++|.++.+||..|
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~-~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~-~~~~~~~~~~Gk~~g 79 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALV-SQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPEK-NFSEILSKYLGKILG 79 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHH-HhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHhhHHHH
Confidence 689999999999999999999999874 567888899999999999999999999999999986 799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 010690 130 WLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAI 209 (503)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~~~~~~ 209 (503)
++.+|.++.......+......++.+...+.. ..|.+. +.+++++++...+..|++...|++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~tp~~~--------------~~l~~l~~~~~~~~~Gi~~i~r~~~i 143 (359)
T TIGR00912 80 RLLSILFILYFFLIAAYLIRIFADFIKTYLLP--RTPIIV--------------IIILIIIVSIYIVRKGIEVLLRTAEI 143 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCHHH--------------HHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 99999998777766667777777777654421 123221 35666777788899999999999999
Q ss_pred HHHHHHHHH-HHHHHHHHhhhcccCCCCCCCCCCCCCchhhhHHHHHH-HHHHhhhchHHHhhhhhhhcCCCCCchhHHH
Q 010690 210 VTTANVLAM-LFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSA-TVFFAFIGFDAVASTAEEVKNPQRDLPLGIG 287 (503)
Q Consensus 210 ~~~~~~~~~-l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~e~k~P~k~ip~~~~ 287 (503)
+.++.+... +++...... ..++.+ -.+..++++...+.+.. ...++|.|+|......+|.||| |+.||++.
T Consensus 144 ~~~~~i~~~~~il~~~~~~---~~~~~~---l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~-~~~~k~~~ 216 (359)
T TIGR00912 144 LLIIFLILFILVLILLAPK---LGNIKN---LLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKK-KKIKKSII 216 (359)
T ss_pred HHHHHHHHHHHHHHHHhcc---cccHHH---ccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh-hhhHHHHH
Confidence 998887663 333222211 111211 12233455666677766 7889999999999999999997 67999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCC-CCCchHHHHHHcchh-H---HHHHHHHHHHHHHHHHHHhhhcchhHHHHHHH
Q 010690 288 TALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMH-W---ASYVITIGAVTALCSTLMGSILPQPRILMAMA 362 (503)
Q Consensus 288 ~~~~~~~v~y~l~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~-~---~~~l~~~~~~~~~~~s~~~~~~~~sr~l~~la 362 (503)
.+...++++|.+...+..+..+.++.. ...|..+..+....+ . ...++....+...+......++.+.+.+..+-
T Consensus 217 ~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~ 296 (359)
T TIGR00912 217 KAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLF 296 (359)
T ss_pred HHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999888866553 467888888877544 2 33566777778888888888888877777663
Q ss_pred h
Q 010690 363 R 363 (503)
Q Consensus 363 ~ 363 (503)
+
T Consensus 297 ~ 297 (359)
T TIGR00912 297 K 297 (359)
T ss_pred C
Confidence 3
No 45
>PHA02764 hypothetical protein; Provisional
Probab=99.86 E-value=6.2e-19 Score=162.79 Aligned_cols=278 Identities=19% Similarity=0.223 Sum_probs=180.4
Q ss_pred ccccccccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchH
Q 010690 42 RSHQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSY 121 (503)
Q Consensus 42 ~~~~~l~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~ 121 (503)
++.+++.|+.+.+|++...++.+.+......+...+....|...+++|+++++++++.+++++|+++++|++||.|.|.+
T Consensus 5 ReSSGLVREvs~lDAF~~Nl~~m~~Gi~Is~~~l~a~l~pG~nlLLAWLLGGLlALPgAL~YAELGSAmPrAGGdYVYIS 84 (399)
T PHA02764 5 RKSSGIIKSFNILDIFSINLLYMGILSGISYPLFVSSLLKNVNLLFAILIGAVFEIPLLLMYYKLTTKFPLNGGDYAYIR 84 (399)
T ss_pred hhcCCceeeccHHHHHHHHHHhhccchhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEhH
Confidence 34567999999999999888776332222223322333457778999999999999999999999999999999999999
Q ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhh
Q 010690 122 ICVGEGVAWLIGWALILEYTIGGSAVARGIS-P-NLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVG 199 (503)
Q Consensus 122 ~~lg~~~g~~~~~~~~~~~~~~~~~~~~~~~-~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g 199 (503)
|.+||.+|++.||..|+.+..+..+...-.. + .++..+ ..+. ...-...+..+...|
T Consensus 85 RAFGP~~GFLvG~a~WLtl~~G~Pal~~l~~~~~~i~~~~------~~f~---------------~~~s~~~i~~~i~~~ 143 (399)
T PHA02764 85 TAFSSKFYTIFGISLWLTYVLSQPILGDLVLLNFNIQNQF------EQFL---------------IVESLFPIVLLIIAN 143 (399)
T ss_pred HhhCccHHHHHHHHHHHHHHhhcchhhheeeeeeeeHHHH------HHHH---------------HHHHHHHHHHHHHcc
Confidence 9999999999999999887776554322111 0 011111 0000 111122333444566
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCC-CCchhhhHHHHHHHHHHhhhchHHHhhhhhhhcCC
Q 010690 200 IKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGY-FPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNP 278 (503)
Q Consensus 200 ~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~k~P 278 (503)
.|..+|...++.....+ +.+ ....++..-..+ ++ .++ ....+.....-+|.-.++..+.++|.||-
T Consensus 144 ~~~~~~~v~il~~a~~i----~ai---f~~~~s~n~~~~---~f~~sn---t~~~a~~~~l~~~~fi~a~~y~~~ei~n~ 210 (399)
T PHA02764 144 KKIYAKIVDILAIAQII----IAI---FIAFKSFNFQYQ---NFTISN---TLLSALLFDLSAFIFINAISYIAGEIKNI 210 (399)
T ss_pred cHHHHHHHHHHHHHHHH----HHH---HhhccceeEEEc---ceeehH---HHHHHHHHHHHHHHHhccHHHHHHHhhcc
Confidence 77777776664333322 111 111111100011 11 112 13333444455677789999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCchHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhhcchhHHH
Q 010690 279 QRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRIL 358 (503)
Q Consensus 279 ~k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~sr~l 358 (503)
+|....|-+.+...+.++-+.-+ +++. .++-+.+..+.++-...+.--.||.+
T Consensus 211 ~k~~~~gyf~s~~~~~~~~ii~s---------------------y~n~------~il~~~~~~w~~~y~~~~~~~~srli 263 (399)
T PHA02764 211 KKSSMIGYFVSYGIVAILSIIDS---------------------YSNL------NILFALMPIWFFSYMPIANKIQSRLI 263 (399)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHh---------------------hhhH------HHHHHHHHHHHHhheeeecchHHHHH
Confidence 99999998888888776654333 1110 12222355556666666777889999
Q ss_pred HHHHhCCCCchhhccccCCCCCch
Q 010690 359 MAMARDGLLPPFFSDVNKTTQVPV 382 (503)
Q Consensus 359 ~~la~d~~lP~~~~~~~~~~~~P~ 382 (503)
++|+.|+.+|+.|+|.|| ++|+
T Consensus 264 ~~~~fd~~lpe~f~k~~~--nv~~ 285 (399)
T PHA02764 264 QTMSFDKVLPEKFSKINP--NVLL 285 (399)
T ss_pred HHHHhhhhchHHHhccCC--Ccee
Confidence 999999999999999998 4887
No 46
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.83 E-value=4.2e-17 Score=164.45 Aligned_cols=294 Identities=19% Similarity=0.211 Sum_probs=233.1
Q ss_pred cccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcCh-HHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHhcch
Q 010690 49 KNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGP-ALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEG 127 (503)
Q Consensus 49 r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~-~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~lg~~ 127 (503)
|+-+.+.+.++.+|+.+|+|+++.|... +.+|- ...+.++++..++..+++.++|...+.|+..+.-...++.+||.
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~--~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~ 78 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIAT--AGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKK 78 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHH--HhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChH
Confidence 3567888999999999999999999763 34454 48888999999999999999999999998888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--chhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHHH
Q 010690 128 VAWLIGWALILEYTIGGSAVARGISPNLAMLFGSAD--SLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (503)
Q Consensus 128 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~~ 205 (503)
.+++.+..+.+.......++..+.++.+++.++... +.+.+ ...+++.++.+.+.+.|.|.+.|
T Consensus 79 g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~~~--------------~~~~~f~~i~~~iv~~g~~~v~~ 144 (394)
T PF03222_consen 79 GGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLSPW--------------LSSLLFTIIFGGIVYFGTKAVDR 144 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCcHH--------------HHHHHHHHHHHHHHHhhHHHHHH
Confidence 999999999999888899999999999998885322 11111 23566777778888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCchhhhHHHHHHHHHHhhhchHHHhhhhhhhcCCCCCchhH
Q 010690 206 AQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLG 285 (503)
Q Consensus 206 ~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~k~P~k~ip~~ 285 (503)
+++++...+++.++.+++..+.+...+.... .. ..+..+...+..+++.+++|.-......+....++-+|+++|+
T Consensus 145 ~n~~lv~~~i~~~~~l~~~~~p~~~~~~L~~---~~-~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~a 220 (394)
T PF03222_consen 145 INRVLVFGMIISFIILVVYLIPHWNPSNLLD---AP-PSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKA 220 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCHHHhhc---cc-cccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHH
Confidence 9999999999998888877765332221111 11 1234566678889999999999999999999998656889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCC----CCC---CchHHHHHHc-chhHHHHHHHHHHHHHHHHHHHhhhcchhHH
Q 010690 286 IGTALSICCALYMLVSIVIVGLVPYYEM----DPD---TPISSAFASH-GMHWASYVITIGAVTALCSTLMGSILPQPRI 357 (503)
Q Consensus 286 ~~~~~~~~~v~y~l~~~~~~~~~~~~~~----~~~---~p~~~~~~~~-~~~~~~~l~~~~~~~~~~~s~~~~~~~~sr~ 357 (503)
+..+..+..++|++..+++++..|.++. +.+ .++....++. .+++...+..+..+++..+|..+...+....
T Consensus 221 i~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~ 300 (394)
T PF03222_consen 221 IIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDF 300 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998886642 122 2344445543 5688888899999999999999987777776
Q ss_pred HHHHH
Q 010690 358 LMAMA 362 (503)
Q Consensus 358 l~~la 362 (503)
+...-
T Consensus 301 l~d~~ 305 (394)
T PF03222_consen 301 LADLF 305 (394)
T ss_pred HHHHH
Confidence 65553
No 47
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=99.82 E-value=1.3e-16 Score=158.44 Aligned_cols=339 Identities=15% Similarity=0.127 Sum_probs=236.3
Q ss_pred hhhhhhhhHHHHHHHHHHhhcCh-H-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHhcchHHHHHHHHHHH
Q 010690 61 VGSTIGAGVYILVGTVAREHSGP-A-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALIL 138 (503)
Q Consensus 61 i~~~iG~G~~~~~~~~~~~~~G~-~-~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~lg~~~g~~~~~~~~~ 138 (503)
++.-+|+|++..|..+..+.|.. . +.++|+++++...+.+++ ..|+.||.|++.++..||+.|++.+|..++
T Consensus 5 FamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~------av~~~gG~~~~l~~~~g~~f~~lf~~~~~l 78 (378)
T TIGR00796 5 FALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI------ALALVGGGYDSLSARIGKVFGILFTVILYL 78 (378)
T ss_pred HHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh------eeeecCCCHHHHHHHhChHHHHHHHHHHHH
Confidence 35578999999999876555544 2 778899999998888887 678889999999999999999999998876
Q ss_pred HHHHHHHHHHHHHHH----HHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 010690 139 EYTIGGSAVARGISP----NLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTAN 214 (503)
Q Consensus 139 ~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~~~~~~~~~~~ 214 (503)
......+ ..+..+. .+...++... ........++++..++..+++.+.|...++++++++.+
T Consensus 79 ~iGP~~a-iPRtaa~s~e~~i~p~~~~~~-------------~~~~l~i~siiff~i~~~l~~~~~k~~~~iGk~LTP~l 144 (378)
T TIGR00796 79 TIGPLFA-IPRTATVSFEMGIAPLLHSPT-------------SLLALFIFSLIFFAVVLLLSLNPSKLIDRVGKFLTPAL 144 (378)
T ss_pred HHHhchh-hhHHHHHHHHHHHHhccCccc-------------chHHHHHHHHHHHHHHHHHHcCcccHHHHhHHHHHHHH
Confidence 5544321 1111111 1333222100 01111224667777777899999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCCCCCCCCCchhhhHHHHHHHHHHhhh-------chHHHhhhhh-hhcCCCCCchhHH
Q 010690 215 VLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFI-------GFDAVASTAE-EVKNPQRDLPLGI 286 (503)
Q Consensus 215 ~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------G~~~~~~~~~-e~k~P~k~ip~~~ 286 (503)
++.++.+++.++.+... ... ....++... ..+..++..+.+++. |+-...++.+ |.|||+|+.|+.+
T Consensus 145 Li~l~~lii~g~~~p~g-~~~--~~~~~~~~~--~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~i 219 (378)
T TIGR00796 145 LVTLLALIIKALLWPAG-PIL--AASGAYASQ--QAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYTI 219 (378)
T ss_pred HHHHHHHHHHHHHcCCC-CcC--Ccccccccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999988875321 111 111111110 236667777778887 8888888888 9999999999999
Q ss_pred HHHH-HHHHHHHHHHHHHHHhcccCCCC----CCCCchHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHH
Q 010690 287 GTAL-SICCALYMLVSIVIVGLVPYYEM----DPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAM 361 (503)
Q Consensus 287 ~~~~-~~~~v~y~l~~~~~~~~~~~~~~----~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~sr~l~~l 361 (503)
..+. ......|+...+..++..+.... +......++.++..|+++..++.+.+.+++++++++.. .+.
T Consensus 220 ~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli-------~~~ 292 (378)
T TIGR00796 220 KAGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLT-------TAC 292 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHH-------HHH
Confidence 8888 55666677777777777664432 23445666777778899999999999999999999944 444
Q ss_pred HhCCCCchhhccccCCCCCchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCCC-CcccCC
Q 010690 362 ARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLI--LRYVPPD-EVPVPS 438 (503)
Q Consensus 362 a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~i~~~~~li~~~~~~~~~l~--~~~~~~~-~~~~~~ 438 (503)
++. |+|.++| +|+++.++...+...+.....++.+..+..-...+.|-......+. +|++.|+ ++++|.
T Consensus 293 a~~------f~~~~~k--~~y~~~v~~~~l~s~~ia~~Gl~~Ii~~~~PvL~~~YP~~i~lill~ll~~~~~~~~~~y~~ 364 (378)
T TIGR00796 293 SEY------FHKLVPK--LSYKTWVIVFTLFSFIVANLGLTQIISISIPVLMIIYPLAIVLILLSFLRKLWDSKRAVYQI 364 (378)
T ss_pred HHH------HHHhcCC--CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeh
Confidence 443 5666554 8999999888888777777778887775554445555444443333 4555554 555654
Q ss_pred C
Q 010690 439 T 439 (503)
Q Consensus 439 ~ 439 (503)
+
T Consensus 365 ~ 365 (378)
T TIGR00796 365 T 365 (378)
T ss_pred H
Confidence 4
No 48
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.81 E-value=5.1e-17 Score=163.49 Aligned_cols=283 Identities=18% Similarity=0.101 Sum_probs=207.7
Q ss_pred HhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHH----h--hhhCCCCCccccchHHHhcchHHHHHH
Q 010690 60 GVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAE----L--ASRCPSAGSAYHYSYICVGEGVAWLIG 133 (503)
Q Consensus 60 ~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~~~~a~~~~e----l--~~~~p~~Gg~~~~~~~~lg~~~g~~~~ 133 (503)
.+++.+|+|++..|.. + |..+++.++++++++.+..+.... . .+.+| ..+.++++++.+||..|.+.+
T Consensus 12 l~gt~IGaGiL~LP~~-a----g~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p-~~~i~~~~~~~fGk~~G~ii~ 85 (397)
T TIGR00814 12 LYGTAIGAGVLFLPIQ-A----GLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNP-CEDITEVVEEHFGKNWGILIT 85 (397)
T ss_pred HHHHHHHHHHHHHHHH-H----HhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHcCHHHHHHHH
Confidence 4488999999999975 2 444566677777766666555444 3 44444 578999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 010690 134 WALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTA 213 (503)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~~~~~~~~~~ 213 (503)
+.|++.......+++.+.++.+..++.... .+..+. ....+++++++...++..|.|.+.|++.++.+.
T Consensus 86 ~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~----------~~~~p~-~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~ 154 (397)
T TIGR00814 86 LLYFFAIYPILLIYSVAITNDSASFLVNQL----------GTAPPL-RGLLSLALILILVAIMSFGEKLLFKIMGPLVFP 154 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCCCcH-HHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHH
Confidence 999999999988888888877776653111 011111 112356667777899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCchhhhHHHHHHHHHHhhhchHHHhhhh----hhhcCC---CCCchhHH
Q 010690 214 NVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTA----EEVKNP---QRDLPLGI 286 (503)
Q Consensus 214 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~----~e~k~P---~k~ip~~~ 286 (503)
+++.++++.+....+...+.. ...+ .....+...+.+.+..+|+|.|+|....++ +|.+|| +|+..|.+
T Consensus 155 ~ii~l~~l~~~lip~~~~~~L---~~~p-~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i 230 (397)
T TIGR00814 155 LVLILVLLSLYLIPHWNGANL---TTFP-SFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIM 230 (397)
T ss_pred HHHHHHHHHHHHHHHcCHHHH---hcCC-cccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHH
Confidence 988887777766643222211 1111 111235668889999999999999999998 556545 46788999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCC----CCCCchHHHHH-HcchhHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHH
Q 010690 287 GTALSICCALYMLVSIVIVGLVPYYEM----DPDTPISSAFA-SHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAM 361 (503)
Q Consensus 287 ~~~~~~~~v~y~l~~~~~~~~~~~~~~----~~~~p~~~~~~-~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~sr~l~~l 361 (503)
..+..+..++|+...+.+.+..+.++. ++..+..+.++ ....++...+..+...++..+|..+.+++....+..+
T Consensus 231 ~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l 310 (397)
T TIGR00814 231 KGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGI 310 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 999999999999999999999886653 12223333333 4567888888899999999999999998888888887
Q ss_pred Hh
Q 010690 362 AR 363 (503)
Q Consensus 362 a~ 363 (503)
-+
T Consensus 311 ~~ 312 (397)
T TIGR00814 311 VL 312 (397)
T ss_pred HH
Confidence 74
No 49
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.79 E-value=2.9e-16 Score=156.72 Aligned_cols=364 Identities=12% Similarity=0.028 Sum_probs=250.5
Q ss_pred CHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHhcchHHHH
Q 010690 52 TIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWL 131 (503)
Q Consensus 52 s~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~lg~~~g~~ 131 (503)
+.+...++..|+.+|+|+++.|... .+.+-......+++..+++..+++.+.|...++|..-+.-..+++.+||.+..+
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~-a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~~i 88 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDL-AGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNII 88 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHHH
Confidence 6777888888999999999999652 233333478889999999999999999999999987788889999999998777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--chhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 010690 132 IGWALILEYTIGGSAVARGISPNLAMLFGSAD--SLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAI 209 (503)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~~~~~~ 209 (503)
.+..+.+-......++..+.++.++..++... +.|.. ..++++.++.+.+.+.|.|.+.|++++
T Consensus 89 ~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~~i~~~--------------~~~llF~~~~~~~v~~gt~~vd~~nr~ 154 (415)
T PRK09664 89 SGITVAFVLYILTYAYISANGAIISETISMNLGYHANPR--------------IVGICTAIFVASVLWISSLAASRITSL 154 (415)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccCCCcHH--------------HHHHHHHHHHHHHHHhchhHHHHHHHH
Confidence 77777777777888999999999988875211 11221 236788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCchhhhHHHHHHHHHHhhhchHHHhhhhhhhcCCCCCchhHHHHH
Q 010690 210 VTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTA 289 (503)
Q Consensus 210 ~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~k~P~k~ip~~~~~~ 289 (503)
+...+++.++.++.....+...+...+...... ....+...+.++++.+++|.-...+..+....++-.|+++|+++.+
T Consensus 155 l~~~~ii~f~~~~~~l~~~i~~~~L~~~~~~~~-~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~G 233 (415)
T PRK09664 155 FLGLKIISFVIVFGSFFFQVDYSILRDATSTTA-GTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFG 233 (415)
T ss_pred HHHHHHHHHHHHHHHHhhcccHHHHhcCccccc-cchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHH
Confidence 998888887766655543221111111110000 0111234666788888888888888888888865558899999999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCC----CCCCch----HHHHHHcchhHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHH
Q 010690 290 LSICCALYMLVSIVIVGLVPYYEM----DPDTPI----SSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAM 361 (503)
Q Consensus 290 ~~~~~v~y~l~~~~~~~~~~~~~~----~~~~p~----~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~sr~l~~l 361 (503)
..+..++|++...++++..|+++. .....+ ....++..+++...++.+...++..+|..+...+....+.++
T Consensus 234 s~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~ 313 (415)
T PRK09664 234 SLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADL 313 (415)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998886553 111122 334444566788888888888999999999777766666665
Q ss_pred HhCCCCchhhccccCCCCCchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH---HHHHHHHHhcCCCCCcccCC
Q 010690 362 ARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTM---VAISVLILRYVPPDEVPVPS 438 (503)
Q Consensus 362 a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~i~~~~~li~~~~---~~~~~l~~~~~~~~~~~~~~ 438 (503)
-+. .+.+ +-.....+++.+...++.....-..+..+...+...+... ..+-..+.|+|.+ +.+++.
T Consensus 314 ~~~---------~~~~-~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~~~il~~ilP~lM~~~~Rk~~~-~~~y~v 382 (415)
T PRK09664 314 FKI---------DNSH-GGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLCATIWAVIIPAVLAIKARKKFP-NQMFTV 382 (415)
T ss_pred hCC---------CCcc-ccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCcee
Confidence 442 2211 1233334566666666666654444444443333333332 2333334454422 244655
Q ss_pred Ccch
Q 010690 439 TLQS 442 (503)
Q Consensus 439 ~~~~ 442 (503)
+-+.
T Consensus 383 ~GG~ 386 (415)
T PRK09664 383 WGGN 386 (415)
T ss_pred eCCH
Confidence 5544
No 50
>PRK10483 tryptophan permease; Provisional
Probab=99.79 E-value=3.4e-16 Score=156.40 Aligned_cols=366 Identities=13% Similarity=0.017 Sum_probs=254.9
Q ss_pred ccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHhcch
Q 010690 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEG 127 (503)
Q Consensus 48 ~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~lg~~ 127 (503)
+++.+.+...++..|+.+|+|+++.|... .+.+-..+...+++..+++..+++.+.|.+.++|+.-+.-..+++.+||.
T Consensus 8 ~~~~~~~g~~~iIaGT~IGaGMLaLP~~~-a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~LG~~ 86 (414)
T PRK10483 8 QTSPSLLGGVVIIGGTIIGAGMFSLPVVM-SGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKG 86 (414)
T ss_pred cCCCcHHHHHHHHHHchHhHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChH
Confidence 46799999999999999999999999652 23333347888999999999999999999999998778888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHHHH
Q 010690 128 VAWLIGWALILEYTIGGSAVARGISPNLAMLFGSA-DSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIA 206 (503)
Q Consensus 128 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~~~ 206 (503)
+..+.+..+.+-......++..+.++.++..++.. .+.|.+. .++++.++.+.+.+.|.|.+.|+
T Consensus 87 g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~~i~~~~--------------~~llF~~~~~~iv~~gt~~vd~~ 152 (414)
T PRK10483 87 WNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPARA--------------AGFGFALLVAFVVWLSTKAVSRM 152 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCCCcHHH--------------HHHHHHHHHHHHHHhhhhHHHHH
Confidence 88777777777777788899999999998887431 1123332 37788888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCchhhhHHHHHHHHHHhhhchHHHhhhhhhhcCCCCCchhHH
Q 010690 207 QAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGI 286 (503)
Q Consensus 207 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~k~P~k~ip~~~ 286 (503)
++++...+++.++.++.....+...+...+.. ...+..+...+...++.+++|.-...+..+.+..++-.|+++|++
T Consensus 153 n~~l~~~~i~~f~~~~~~l~~~i~~~~L~~~~---~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I 229 (414)
T PRK10483 153 TAIVLGAKVITFFLTFGSLLGHVQPATLFNVA---ESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCL 229 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCHHHHhccc---cccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHH
Confidence 99999999888877666544322111111111 011122344677888899999888888998888765446899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCC----CCCc---hHHHHHH-cchhHHHHHHHHHHHHHHHHHHHhhhcchhHHH
Q 010690 287 GTALSICCALYMLVSIVIVGLVPYYEMD----PDTP---ISSAFAS-HGMHWASYVITIGAVTALCSTLMGSILPQPRIL 358 (503)
Q Consensus 287 ~~~~~~~~v~y~l~~~~~~~~~~~~~~~----~~~p---~~~~~~~-~~~~~~~~l~~~~~~~~~~~s~~~~~~~~sr~l 358 (503)
+.+..+..++|++..+++++..|+++.. .... ..+.+++ ...++...+..+...++..+|..+...+....+
T Consensus 230 ~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l 309 (414)
T PRK10483 230 VYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYL 309 (414)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999865521 1222 2234443 355678888888888899999999877777777
Q ss_pred HHHHhCCCCchhhccccCCCCCchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH---HHHHHHHHHhcCCCCCcc
Q 010690 359 MAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFT---MVAISVLILRYVPPDEVP 435 (503)
Q Consensus 359 ~~la~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~i~~~~~li~~~---~~~~~~l~~~~~~~~~~~ 435 (503)
.++-+. .+++ +-.....+++.+...++.....-..+..+...+....+. +..+-+.+.|+|.+ +.+
T Consensus 310 ~D~~k~---------~~~~-~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~~~il~~ilP~lM~~~~Rk~~~-~~~ 378 (414)
T PRK10483 310 ADLFGF---------DDSA-MGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLAATIWAAIVPALLARASRKRFG-SPK 378 (414)
T ss_pred HHHhCC---------CCcc-ccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCC
Confidence 766542 1211 112223445666666666655443443333333333222 22233334454422 334
Q ss_pred cCCCcch
Q 010690 436 VPSTLQS 442 (503)
Q Consensus 436 ~~~~~~~ 442 (503)
++.+-+.
T Consensus 379 y~v~Gg~ 385 (414)
T PRK10483 379 FRVWGGK 385 (414)
T ss_pred ceecCCH
Confidence 5555443
No 51
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.77 E-value=2.7e-15 Score=150.63 Aligned_cols=291 Identities=15% Similarity=0.169 Sum_probs=222.5
Q ss_pred CHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHhcchHHH
Q 010690 52 TIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAW 130 (503)
Q Consensus 52 s~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~-~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~lg~~~g~ 130 (503)
+.+.+.++..|+.+|+|+++.|... +.+|.. ..+.++++..++..+++.++|..+++|+..+....+++.+||+.++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~--~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~ 81 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAA--AGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQW 81 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHH--HhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHH
Confidence 5677888888999999999999653 445654 7778888888899999999999998887778888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 010690 131 LIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIV 210 (503)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~~~~~~~ 210 (503)
+.+..|.+.......++..+.++.+...++. +.. .+++. ....+.+.++...+.+.|.|.+.|+++++
T Consensus 82 i~~~~y~fl~y~ll~AYisg~g~il~~~l~~------~~~-~~i~~-----~~~~l~F~~~~~~iv~~g~~~v~~~n~~L 149 (403)
T PRK15132 82 LTGFSMMFLMYALTAAYISGAGELLASSISD------WTG-ISMSP-----TAGVLLFTLVAGGVVCVGTSSVDLFNRFL 149 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH------hcc-CCCCh-----HHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 9999999988889999999977777766531 110 01110 11256667777778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCchhhhHHHHHHHHHHhhhchHHHhhhhhhhcCCCCCchhHHHHHH
Q 010690 211 TTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTAL 290 (503)
Q Consensus 211 ~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~k~P~k~ip~~~~~~~ 290 (503)
...+++.++.++.....+...+.... . +... + ..+...++.+++|.-...+..+....++-.|.++|++..+.
T Consensus 150 ~~~~ii~~~~~~~~l~p~~~~~~L~~---~-~~~~-~--~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs 222 (403)
T PRK15132 150 FSAKIIFLVVMLALMMPHIHKVNLLT---L-PLQQ-G--LALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGS 222 (403)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHhc---C-Cccc-c--HHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHH
Confidence 99998888766665544322221111 0 1111 1 26778888999999999999999998766688999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCC----CCCC---chHHHHHH-cchhHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHH
Q 010690 291 SICCALYMLVSIVIVGLVPYYEM----DPDT---PISSAFAS-HGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMA 362 (503)
Q Consensus 291 ~~~~v~y~l~~~~~~~~~~~~~~----~~~~---p~~~~~~~-~~~~~~~~l~~~~~~~~~~~s~~~~~~~~sr~l~~la 362 (503)
.+..++|++..+++++..|.++. +... +..+.+++ ...++...+..+...++..+|..+...+....+.++-
T Consensus 223 ~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~ 302 (403)
T PRK15132 223 AIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLF 302 (403)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987653 1222 33444444 4668888999999999999999998888888777775
Q ss_pred h
Q 010690 363 R 363 (503)
Q Consensus 363 ~ 363 (503)
+
T Consensus 303 ~ 303 (403)
T PRK15132 303 Q 303 (403)
T ss_pred c
Confidence 4
No 52
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=99.76 E-value=1.2e-15 Score=143.13 Aligned_cols=270 Identities=16% Similarity=0.219 Sum_probs=209.0
Q ss_pred HHhhhhhhhhHHHHHHHHHHhhcCh---HHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHhcchHHHHHHHH
Q 010690 59 IGVGSTIGAGVYILVGTVAREHSGP---ALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWA 135 (503)
Q Consensus 59 ~~i~~~iG~G~~~~~~~~~~~~~G~---~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~lg~~~g~~~~~~ 135 (503)
..++.++|+|. .+|++..|..|+ ..+++.++.+++....+....+++++++ +.+.-++.++..||.++.+.+..
T Consensus 11 ~~ig~~vGAGf--AsGqEi~QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~-a~~y~~~~~~v~~~~~~ki~d~~ 87 (349)
T COG3949 11 AFIGTVVGAGF--ASGQEIMQFFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKFN-ATSYREILKYVSGPKFAKIIDII 87 (349)
T ss_pred HHHHHhhcccc--cchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc-ccchHHHHHHHhhHHHHHHHHHH
Confidence 34578999998 888887776655 4899999999999999999999999995 45788899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHH
Q 010690 136 LILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVG-IKESTIAQAIVTTAN 214 (503)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g-~k~~~~~~~~~~~~~ 214 (503)
..+..+..+.++.++.++.+++.++ .|.|.. +++++.++.++.+++ ++...+++.+.+++.
T Consensus 88 iif~lf~~~vVM~AGags~~~e~~~----lP~wiG--------------ali~i~~v~i~lfl~~vegi~tvn~iI~P~L 149 (349)
T COG3949 88 IIFFLFSTAVVMLAGAGSLLEEMFG----LPYWIG--------------ALIIILLVLILLFLGRVEGIITVNGIITPFL 149 (349)
T ss_pred HHHHHHHHHHHHhccchhHHHHHhC----ccHHHH--------------HHHHHHHHHHHHHHhcccceeeeheeHHHHH
Confidence 9999888899999999999999998 888864 477777777777777 999999999999988
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCCCCCCCCCchhhhHHHHHHHHHHhhhchHHHhhhhhhhcCCCCCchhHHHHHHHHHH
Q 010690 215 VLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICC 294 (503)
Q Consensus 215 ~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~k~P~k~ip~~~~~~~~~~~ 294 (503)
++.+..+.......+..+.+ ..+.. -.+++...... ..++-....+.....+++|++++ |+..+|.+.+.++.+
T Consensus 150 Ii~l~~v~~~~~f~~~~~~a-~~~~~--~~~~W~~~~~~--Y~alNi~~~~avLv~lg~~~~~~-~~~~~g~l~gglIlg 223 (349)
T COG3949 150 IIILVLVTLSFQFTNLGNAA-QIVLT--KQGNWKASAVG--YGALNILVAVAVLVPLGGRMESR-KVSGIGGLIGGLILG 223 (349)
T ss_pred HHHHHHHHHHHHHhhccchh-hhcCC--cCCChHHHHHh--hhhHHHHhHhHhhhhhccccccc-chhhhhhhhhhHHHH
Confidence 88755544433322211111 11111 12332222221 33334445667778888999995 888999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCchHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhC
Q 010690 295 ALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARD 364 (503)
Q Consensus 295 v~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~sr~l~~la~d 364 (503)
++..+..+.+....+ +-.+.+.|..+...+.. +..+.++.+.+....+++.++ .+|+++++
T Consensus 224 vl~~l~nlsLi~~~~-~v~~~dIP~l~i~~~~~-~~i~lvm~vIi~~~IytT~vg-------~iy~l~~r 284 (349)
T COG3949 224 VLLFLINLSLIALYD-KVVNYDIPLLTIAKNFS-PLIGLVMSVIIWLEIYTTTVG-------LIYGLASR 284 (349)
T ss_pred HHHHHHHHHHHhhcc-hhhccCCcHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHh
Confidence 999888888887766 44566889999888876 778889999999999999999 67778876
No 53
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.72 E-value=2.5e-14 Score=145.37 Aligned_cols=300 Identities=18% Similarity=0.115 Sum_probs=230.2
Q ss_pred cccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCC-ccccchHHHh
Q 010690 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAG-SAYHYSYICV 124 (503)
Q Consensus 47 l~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~-~i~~~il~~l~~~~~a~~~~el~~~~p~~G-g~~~~~~~~l 124 (503)
++++-+..+.+++.+++.+|+|+++.|-. ...+|-. .+...++++.++....+.+.|..+++|+.. +.+.-+++.+
T Consensus 5 ~~~~~s~~~~vl~l~gT~IGAGvL~lP~a--~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~ 82 (415)
T COG0814 5 MKKTSSDLGGVLILAGTAIGAGVLFLPVA--FGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYL 82 (415)
T ss_pred ccCCcchHHHHHHHHccccccchhhhhHH--hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHh
Confidence 45677888888889999999999999854 4666765 777888999999999999999999999874 8999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHH
Q 010690 125 GEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKEST 204 (503)
Q Consensus 125 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~ 204 (503)
||.++++.+..+.+.....+.++..+.++.+.+.++..... .+.......++++.++..+.+.|-+...
T Consensus 83 G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~-----------~~~~r~~~~lif~~~~~~l~~~~~~~~l 151 (415)
T COG0814 83 GKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGL-----------NPLPRKLGSLIFALVLAFLSWLGTLAVL 151 (415)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhccc-----------CCcchHHHHHHHHHHHHHHHHhchhHHH
Confidence 99999999999999999999999999999998887521110 0022223466777777889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCchhhhHHHHHHHHHHhhhchHHHhhhhhhhcCCCCC-ch
Q 010690 205 IAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRD-LP 283 (503)
Q Consensus 205 ~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~k~P~k~-ip 283 (503)
|.+.++...+++.++++......+..... ....+...+..+..++.++++.+++|.+.-....+..|+|++.++ ++
T Consensus 152 k~ts~l~~~~v~~~~~l~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~ 228 (415)
T COG0814 152 KITSLLVFGKVIYLVLLVVYLIPHWNPAN---LFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVR 228 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCHHH---HhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHH
Confidence 99999999998888877776654321111 111100113445678889999999999999999999999988877 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccCCCC-------CCCCchHHHHHH-cchhHHHHHHHHHHHHHHHHHHHhhhcchh
Q 010690 284 LGIGTALSICCALYMLVSIVIVGLVPYYEM-------DPDTPISSAFAS-HGMHWASYVITIGAVTALCSTLMGSILPQP 355 (503)
Q Consensus 284 ~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~-------~~~~p~~~~~~~-~~~~~~~~l~~~~~~~~~~~s~~~~~~~~s 355 (503)
|.+..+..+..++|....+....+.+.... .+.........+ ...+.......+..+++..+|..+.....-
T Consensus 229 k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~ 308 (415)
T COG0814 229 KAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLF 308 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHH
Confidence 999999999999999999999999886532 122333333333 345667777788888888888777555444
Q ss_pred HHHHHHH
Q 010690 356 RILMAMA 362 (503)
Q Consensus 356 r~l~~la 362 (503)
..+..+-
T Consensus 309 ~~~~~~~ 315 (415)
T COG0814 309 EGLADLF 315 (415)
T ss_pred HhhhHHH
Confidence 4444443
No 54
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.72 E-value=2.6e-14 Score=142.85 Aligned_cols=302 Identities=15% Similarity=0.081 Sum_probs=219.5
Q ss_pred cccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChH-HHHHHHHHHHHHHHHHHHHHHhhhhC-CCCCccccchHHHh
Q 010690 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRC-PSAGSAYHYSYICV 124 (503)
Q Consensus 47 l~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~-~i~~~il~~l~~~~~a~~~~el~~~~-p~~Gg~~~~~~~~l 124 (503)
.+|.=..|.. ...|+.+|+|+++.|.. .+.+|.. .++.++++..++..++..++|....+ |+..+.-..+++.+
T Consensus 17 w~~~d~~W~l--~l~GTAIGAGmLfLPI~--~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~l 92 (443)
T PRK13629 17 WRKSDTTWTL--GLFGTAIGAGVLFFPIR--AGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHF 92 (443)
T ss_pred CccccchHHH--HHHHHHHhHHHHHHHHH--HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHc
Confidence 3444444543 34488999999999965 3556665 77778888899999999999999999 55556777999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHH
Q 010690 125 GEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKEST 204 (503)
Q Consensus 125 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~ 204 (503)
||+++.+.+..|.+.......++...+.+.+...+...... + .......+++++.++..+.+.|-|.+.
T Consensus 93 G~~g~~i~~ilYff~ly~ll~aY~~~itn~l~sfl~~ql~~---------~--~~~r~l~slifv~~l~~iv~~G~~~v~ 161 (443)
T PRK13629 93 GKTGGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQLGF---------A--PLNRGFVALFLLLLMAFVIWFGKDLMV 161 (443)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc---------C--CccHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999999998989877777776543210000 0 011123478888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCC-C-CCCCCch-hhhHHHHHHHHHHhhhchHHHhhhhhh----hc-
Q 010690 205 IAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYEL-P-TGYFPFG-VNGMLAGSATVFFAFIGFDAVASTAEE----VK- 276 (503)
Q Consensus 205 ~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~-~-~~~~~~~-~~~~~~~~~~~~~~~~G~~~~~~~~~e----~k- 276 (503)
|++.++...+++.++.+.+..+.+...+...+... . +.....+ ....+.++++.+++|.-.-....++.. .+
T Consensus 162 kv~~~Lv~~~i~~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~ 241 (443)
T PRK13629 162 KVMSYLVWPFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEK 241 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcc
Confidence 99999999999999888888776433332221111 0 0111111 124677788888888766666666655 32
Q ss_pred ----C-CCCCchhHHHHHHHHHHHHHHHHHHHHHhcccCCCC----CCCCc-hHHHHHHcch---------hHHHHHHHH
Q 010690 277 ----N-PQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEM----DPDTP-ISSAFASHGM---------HWASYVITI 337 (503)
Q Consensus 277 ----~-P~k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~----~~~~p-~~~~~~~~~~---------~~~~~l~~~ 337 (503)
| .+|+..|.+..+..+..++|+++.+.+.+..++++. +.+.+ +..+.+...+ ++...+..+
T Consensus 242 ~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~i 321 (443)
T PRK13629 242 DFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASI 321 (443)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHH
Confidence 2 237789999999999999999999999999997764 24455 4444444444 678888888
Q ss_pred HHHHHHHHHHHhhhcchhHHHHHHHh
Q 010690 338 GAVTALCSTLMGSILPQPRILMAMAR 363 (503)
Q Consensus 338 ~~~~~~~~s~~~~~~~~sr~l~~la~ 363 (503)
...++..+|..|-..+..-.+..+.+
T Consensus 322 fa~~AI~TSFlGv~LGl~E~l~gl~~ 347 (443)
T PRK13629 322 IALVAIFKSFFGHYLGTLEGLNGLIL 347 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999988888888888874
No 55
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.66 E-value=2e-13 Score=135.11 Aligned_cols=288 Identities=16% Similarity=0.222 Sum_probs=230.0
Q ss_pred ccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHhcchHH
Q 010690 50 NLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVA 129 (503)
Q Consensus 50 ~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~lg~~~g 129 (503)
++|.+|.+++.+...+|++.+..+...+ +.+| ++|++.+++++.+....+.+..+++++|+. ...++.++.+||++|
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~-~~~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~-~l~~~~~~~~Gk~lg 77 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILA-EQAG-DAWISVLLGGLIGLLLALLIYYLLKRFPGK-TLVEISEKLFGKWLG 77 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHH-HHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHhCcHHH
Confidence 5789999999999999999999999865 4457 899999999999999999999999999985 789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 010690 130 WLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAI 209 (503)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~~~~~~ 209 (503)
.+.+..+.+.+....+......++.+...+-. +.|.+. +...+++++......|.+...|...+
T Consensus 78 ~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp--~TP~~~--------------i~~~~ll~~~y~a~~G~e~i~R~~~~ 141 (320)
T PF03845_consen 78 KIINLLYILYFLLISALVLREFSEFIKTYLLP--ETPIWV--------------IILLFLLVAAYAARKGIEVIARVAEI 141 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cCCHHH--------------HHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999999988888889999999888876531 133332 25666777888888999999998888
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCchhhhHHHHHHHHHHhhhchHHHhhhhhhhcCCCCCchhHHHHH
Q 010690 210 VTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTA 289 (503)
Q Consensus 210 ~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~k~P~k~ip~~~~~~ 289 (503)
+.++.++.++.+.+...- +-++ ++-.+..+.++...+.+.....+.+.|.+....+...+||| |+..|....+
T Consensus 142 ~~~~~~i~~~~i~~~~~~---~~~~---~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~-~~~~k~~~~~ 214 (320)
T PF03845_consen 142 LFPIFLILLLLILLLSIP---NIDW---DNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDK-KKLKKSLLIA 214 (320)
T ss_pred HHHHHHHHHHHHHHHhcc---cCCH---HHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-hHHHHHHHHH
Confidence 888777766655544331 1112 11223445667778888888889999999999999999997 5678999999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCC-CCCCCchHHHHHHcchh----HHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHh
Q 010690 290 LSICCALYMLVSIVIVGLVPYYE-MDPDTPISSAFASHGMH----WASYVITIGAVTALCSTLMGSILPQPRILMAMAR 363 (503)
Q Consensus 290 ~~~~~v~y~l~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~----~~~~l~~~~~~~~~~~s~~~~~~~~sr~l~~la~ 363 (503)
...++++|.+..+...+..+.+. .+...|..+..+....+ -...++....+...+......++.+.+.+..+-+
T Consensus 215 ~~~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f~ 293 (320)
T PF03845_consen 215 ILISGLFLLFIIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLFK 293 (320)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999998888888877544 34567888877776433 3456777788888888888888888888877754
No 56
>PLN03074 auxin influx permease; Provisional
Probab=99.25 E-value=4.9e-08 Score=101.06 Aligned_cols=236 Identities=9% Similarity=0.001 Sum_probs=134.2
Q ss_pred cccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChH-HHHHHHHHHHHHHHHHHHHHH----hhhhCCCCCccc-----c
Q 010690 49 KNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAE----LASRCPSAGSAY-----H 118 (503)
Q Consensus 49 r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~-~i~~~il~~l~~~~~a~~~~e----l~~~~p~~Gg~~-----~ 118 (503)
+.-+.+++.+-.+.+.+|.|+++.|.. ...+|.. +++..++.++++.-+++.+.+ ...+.|+.+-.+ .
T Consensus 44 ~~~s~~~~~~~l~~~~vG~GILaLP~A--f~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~ 121 (473)
T PLN03074 44 HGGSVYDAWFSCASNQVAQVLLTLPYS--FSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQ 121 (473)
T ss_pred CCchHHHHHHHHHHHHHhHHHHhHHHH--HHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHH
Confidence 356777777778889999999999864 5667765 777788888887777776554 455555432111 2
Q ss_pred c---hHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHH
Q 010690 119 Y---SYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGL 195 (503)
Q Consensus 119 ~---~~~~lg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i 195 (503)
| ..+.+||+++.+.....++.....+..+....++.+... +... ....+...++++.+. ..
T Consensus 122 ~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l-~~~~------------~~~~~~~i~~~v~~~---~~ 185 (473)
T PLN03074 122 WFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYI-NDNL------------DKRTWTYIFGACCAT---TV 185 (473)
T ss_pred HHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhh-CCCc------------CCCeEEeehHHHHHH---HH
Confidence 2 334578888777765555555555555555444443322 1100 111111111222221 22
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCchhhhHHHHHHHHHHhhhchHHHhhhhhhh
Q 010690 196 LCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEV 275 (503)
Q Consensus 196 ~~~g~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~ 275 (503)
....+|..+++..+.....+...+.+.+........+++ .. . .+..+..++.++.+.+|+|.|......+-.|+
T Consensus 186 ~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~---~~-~--~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M 259 (473)
T PLN03074 186 FIPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGV---KH-S--GPTKLVLYFTGATNILYTFGGHAVTVEIMHAM 259 (473)
T ss_pred HccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC---CC-C--CchhHHHHHHHHHHHHHHhcccccHHHHHHhc
Confidence 234455555544333232222212222222222111111 11 1 12345557777778899999999999999999
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccc
Q 010690 276 KNPQRDLPLGIGTALSICCALYMLVSIVIVGLVP 309 (503)
Q Consensus 276 k~P~k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~ 309 (503)
||| ++.++....+.....++|+..++..+...+
T Consensus 260 ~~P-~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG 292 (473)
T PLN03074 260 WKP-QKFKYIYLAATLYVLTLTLPSAAAVYWAFG 292 (473)
T ss_pred cCh-hcccchHHHHHHHHHHHHHHHHHeeeeeec
Confidence 999 558887777777777777776665555544
No 57
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.24 E-value=7.5e-09 Score=104.82 Aligned_cols=294 Identities=15% Similarity=0.057 Sum_probs=187.2
Q ss_pred cccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCc-----cccch
Q 010690 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGS-----AYHYS 120 (503)
Q Consensus 47 l~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~-~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg-----~~~~~ 120 (503)
.+|+-|++++.+..++..+|.|.+..|. +....|.. .+..+++.+++..-+++.+.+.-+.++...| ..+..
T Consensus 34 ~~~~~s~~~a~~~~i~~~~G~gvLsLP~--A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~ 111 (437)
T KOG1303|consen 34 PSRGGSWWQAAFHIINALIGAGVLSLPY--ALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLG 111 (437)
T ss_pred cCCCCcceehhhheehhhhhhhhhhhHH--HHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHH
Confidence 4578999999999999999999999884 55667765 5888999999999999989998888887777 56677
Q ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHH-hhh
Q 010690 121 YICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLL-CVG 199 (503)
Q Consensus 121 ~~~lg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~-~~g 199 (503)
++.+|++.-.+.++...+..+..+..+....++++...+........ .+. ...+ .+++..+..... +..
T Consensus 112 ~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~-----~l~-~~~f----~iif~~i~~~~s~lp~ 181 (437)
T KOG1303|consen 112 QAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN-----SLD-KQYF----IIIFGLIVLPLSQLPN 181 (437)
T ss_pred HHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-----ccc-ceeh----hhhHHHHHHHHHHCCC
Confidence 88899777667888888888888888888889999988753321100 111 1111 222222222222 233
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCchhhhHHHHHHHHHHhhhchHHHhhhhhhhcCCC
Q 010690 200 IKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQ 279 (503)
Q Consensus 200 ~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~k~P~ 279 (503)
.....++........+.........+............... ...+... .+.++....|+|.|......+-.++|+|+
T Consensus 182 ~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~-~~~~~~~--~f~a~g~iaFaf~gH~v~peIq~tMk~p~ 258 (437)
T KOG1303|consen 182 FHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYL-DLGTIPT--VFTALGIIAFAYGGHAVLPEIQHTMKSPP 258 (437)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcc-cCCCCcc--hhhhhhheeeeecCCeeeeehHhhcCCch
Confidence 33333333333333333333333333332211111101100 0111111 16677888899999999999999999996
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCchHHHHHHc-chhHHHHHHHHHHHHHHHHHHHhhhcchhHHH
Q 010690 280 RDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASH-GMHWASYVITIGAVTALCSTLMGSILPQPRIL 358 (503)
Q Consensus 280 k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~l~~~~~~~~~~~s~~~~~~~~sr~l 358 (503)
| ..|+.+.++.+++++|+..+..-+...++... + +...+. ...|.....++.+.+-.+.+..-.....--.+
T Consensus 259 ~-f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~--~----~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~ 331 (437)
T KOG1303|consen 259 K-FKKALLISYIIVTFLYFPVAIIGYWAFGDSVP--D----NILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVV 331 (437)
T ss_pred h-hhhHHHHHHHHHHHHHHHHHHhhhhhhccccc--h----hhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHH
Confidence 6 99999999999999999888877766653221 1 122222 35677777777777777766655444444444
Q ss_pred HHHH
Q 010690 359 MAMA 362 (503)
Q Consensus 359 ~~la 362 (503)
..+.
T Consensus 332 E~~~ 335 (437)
T KOG1303|consen 332 EKLI 335 (437)
T ss_pred HHHh
Confidence 4443
No 58
>PTZ00206 amino acid transporter; Provisional
Probab=99.21 E-value=6.6e-08 Score=100.46 Aligned_cols=250 Identities=14% Similarity=0.166 Sum_probs=149.7
Q ss_pred CHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHhcchHHH
Q 010690 52 TIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAW 130 (503)
Q Consensus 52 s~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~-~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~lg~~~g~ 130 (503)
|..++.+.-+.+.+|+|++..|.. ...+|.. .++.+++.++++..+...+.+.+++.+ .-+..+-.++.+||+..+
T Consensus 61 g~~~s~fnL~~~~iGaGILsLP~A--f~~~G~v~giillil~a~ls~ys~~lL~~~~~~~~-~~sY~~la~~~~G~~g~~ 137 (467)
T PTZ00206 61 GIAASAFNIASSTVGAGIVGLPSA--ANSSGLVMAMIYLIIITAMTIFSIYALGVAADKTN-IRTYEGVARVLLGPWGSY 137 (467)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCCHHHHHHHHhCHHHHH
Confidence 345666666788999999998864 4566754 666677777777777777777666533 335666777789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 010690 131 LIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIV 210 (503)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~~~~~~~ 210 (503)
++.+...+..+..+.++....++.+...+.... .+.+..+. .+..... +.+.+.+++-+.....++..+++..+.
T Consensus 138 ~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~-~~~~~~~~--~~~r~~~--~~i~~~i~lPLs~~r~i~~L~~~S~i~ 212 (467)
T PTZ00206 138 YVAATRAFHGFSACVAYVISVGDILSATLKGTN-APDFLKQK--SGNRLLT--SLMWLCFMLPLVIPRHIDSLRYVSTIA 212 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-ccchhhhc--cCcEEee--eehhhhHhhhcccccchHHHHHHHHHH
Confidence 999999998888899999999999888775322 12221100 0011100 011111222222333444444443322
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCCC----CCCC--CCCchhhhHHHHHHHHHHhhhchHHHhhhhhhhcCCC-CCch
Q 010690 211 TTANVLAMLFVIIAGSYLGFKTGWSGYE----LPTG--YFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQ-RDLP 283 (503)
Q Consensus 211 ~~~~~~~~l~~~i~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~k~P~-k~ip 283 (503)
....+...+.+++........+...+.. ...+ .+. .....+.++....|+|.+.......-.|+|||. |+..
T Consensus 213 ~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~ 291 (467)
T PTZ00206 213 VSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFN-SGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFV 291 (467)
T ss_pred HHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEec-CchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHH
Confidence 2111111111111111111111111000 0000 011 112467788899999999999999999999865 6677
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccC
Q 010690 284 LGIGTALSICCALYMLVSIVIVGLVPY 310 (503)
Q Consensus 284 ~~~~~~~~~~~v~y~l~~~~~~~~~~~ 310 (503)
+....+..++.++|.++.+.-+...+.
T Consensus 292 ~v~~~s~~i~~~lY~~~G~~GYl~fG~ 318 (467)
T PTZ00206 292 LASTIAMGMCFTMYVLTAFFGYMDFGR 318 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 888889999999999888877776653
No 59
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.19 E-value=6e-08 Score=96.94 Aligned_cols=345 Identities=16% Similarity=0.149 Sum_probs=205.7
Q ss_pred ccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChH-HHHHHHHHHHHHHH----HHHHHHHhhhhCCCC---------
Q 010690 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAF----SAFCYAELASRCPSA--------- 113 (503)
Q Consensus 48 ~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~-~i~~~il~~l~~~~----~a~~~~el~~~~p~~--------- 113 (503)
++..|..+.+.--+-+++|+|.+..|.. ...+|.. ..+..++.+.++.- ..-+.-+++++..+.
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~A--Fk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~ 121 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLA--FKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAE 121 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHH--HHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHH
Confidence 4458899999888899999999988864 5677764 44444444444332 334555666665322
Q ss_pred ----CccccchHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHH
Q 010690 114 ----GSAYHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILV 189 (503)
Q Consensus 114 ----Gg~~~~~~~~lg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 189 (503)
+|+- | -|.+||...+++.....+++...|.++..-.++.+.+.++.... + .+..+ ..++.
T Consensus 122 ~a~~~~~~-~-~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~-~-----------~~s~~--~~i~~ 185 (449)
T KOG1304|consen 122 SAMEGGPG-W-LRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSP-G-----------VLSVR--LYILI 185 (449)
T ss_pred HHHcCCcH-H-HHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCC-C-----------CccHH--HHHHH
Confidence 3333 5 67779999999999999999999999999999999988761110 0 11111 12222
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCchhhhHHHHHHHHHHhhhchHHHh
Q 010690 190 LIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVA 269 (503)
Q Consensus 190 ~~~~~i~~~g~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 269 (503)
.+...+.+.-+|..+++.-+.....++.++.++++..+. .++.+ .....+.+. ++.++-..+..++|+|-|..++.
T Consensus 186 ~~~~~lll~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~-~~~~~-~~~~~~~~~--~~~~~~lf~GtaifafEGig~VL 261 (449)
T KOG1304|consen 186 QLPPLLLLNLIRNLKILSPFSLFANVFILVGLAIIMYYL-VQDLP-PTSDLPAVT--GWSGLPLFFGTAIFAFEGIGMVL 261 (449)
T ss_pred HHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHH-HhccC-Ccccccccc--chhhhHHHHHHHHHHhccceEEE
Confidence 333333334455555555555555555555555544332 22222 222222221 25667777888999999999999
Q ss_pred hhhhhhcCCCCCch---hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC---CCchHHHHHHcchhHHHHHHHHHHHHHH
Q 010690 270 STAEEVKNPQRDLP---LGIGTALSICCALYMLVSIVIVGLVPYYEMDP---DTPISSAFASHGMHWASYVITIGAVTAL 343 (503)
Q Consensus 270 ~~~~e~k~P~k~ip---~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~~~---~~p~~~~~~~~~~~~~~~l~~~~~~~~~ 343 (503)
.+=+++|+| ++.| ...-.+..++.++|....+.=+...+.+..+. +-|. .|+...+-+.+.+..
T Consensus 262 PlEn~Mk~P-~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~---------~~l~~~Vkl~~ai~I 331 (449)
T KOG1304|consen 262 PLENSMKKP-QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ---------EILSQTVKLLLAIAI 331 (449)
T ss_pred ehhhcccCh-hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc---------cHHHHHHHHHHHHHH
Confidence 999999999 5566 77888889999999888877776666443221 2232 333444445555555
Q ss_pred HHHHHhhhcchhHHHHHHHhCCCCchhhccccCC-CCCchHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHH
Q 010690 344 CSTLMGSILPQPRILMAMARDGLLPPFFSDVNKT-TQVPVKSTIVTGIVAAALA-FFMDVSALAGMVSVGTLLAFTMVAI 421 (503)
Q Consensus 344 ~~s~~~~~~~~sr~l~~la~d~~lP~~~~~~~~~-~~~P~~a~~~~~~~~~~~~-~~~~~~~l~~i~~~~~li~~~~~~~ 421 (503)
+-|---.+|..-++++.-=++ .+++.+++ ...-.|..+ ..++.+++ .+++++.+.+++.........++..
T Consensus 332 ~ls~pLQ~yv~~eIi~~~i~~-----k~~~~~~~~~~~~~R~~l--Vllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P 404 (449)
T KOG1304|consen 332 FLTYPLQFYVPIEIIEPGIRK-----KFSENRKKLLEYALRVFL--VLLTFLIAVAVPNLALFISLVGSVSCSLLALIFP 404 (449)
T ss_pred HHcCchhhhhhHHHHHHhHHH-----hcCcchhHHHHHHHHHHH--HHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHcc
Confidence 555555555555555543221 13311111 011112222 22222222 3678888888888777776666666
Q ss_pred HHHHHhcCCC
Q 010690 422 SVLILRYVPP 431 (503)
Q Consensus 422 ~~l~~~~~~~ 431 (503)
+.+-+.-.++
T Consensus 405 ~liel~~~~~ 414 (449)
T KOG1304|consen 405 PLIELITFYP 414 (449)
T ss_pred HHHHHHHhcc
Confidence 6665544433
No 60
>PRK11375 allantoin permease; Provisional
Probab=99.00 E-value=1.9e-06 Score=89.69 Aligned_cols=333 Identities=16% Similarity=0.121 Sum_probs=168.1
Q ss_pred ccccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcCh---HHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHH
Q 010690 46 KLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGP---ALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYI 122 (503)
Q Consensus 46 ~l~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~---~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~ 122 (503)
+.+|+.++++.+.+=++..+....+...+... . .|- .++++.+++.++..+.....+..+.++-. +.....|.
T Consensus 22 ~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l-~-~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~~Gl--~~~v~sR~ 97 (484)
T PRK11375 22 QSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFF-I-LGLSTFSIMLAIILSAFFIAAVMVLNGAAGSKYGV--PFAMILRA 97 (484)
T ss_pred ccccCCcHHHHHHHHHHHhccHHHHHHHHHHH-H-ccchHHHHHHHHHHHHHHHHHHHHHhcccccccCC--ChhHhHHH
Confidence 34678999999888666666555543333222 2 232 25666666666555555555666665432 46667788
Q ss_pred HhcchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhh-hccCCCCccc--hhHHHHHHHHHHHHHHhh
Q 010690 123 CVGEGVAWLIGWALI-LEYTIGGSAVARGISPNLAMLFGSADSLPFFMA-RQQIPGLGII--VDPCAAILVLIVTGLLCV 198 (503)
Q Consensus 123 ~lg~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~i~~~~~~~i~~~ 198 (503)
.||.+-+.+.+.... +..+...+.+....++.+...+... +|.+.. .+.+|-.... ...+.+++.++...+...
T Consensus 98 sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i--~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~~~~~~~ 175 (484)
T PRK11375 98 SYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKI--WPGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIGFG 175 (484)
T ss_pred HHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccccccccccccCCCcHHHHHHHHHHHHHHHHHHHc
Confidence 899887777777763 4555666666666666665443211 111100 0011100111 111233444556666778
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCC-C-CCCCC--CchhhhHHHHHHHHHHhhh-chHHHhhhhh
Q 010690 199 GIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYE-L-PTGYF--PFGVNGMLAGSATVFFAFI-GFDAVASTAE 273 (503)
Q Consensus 199 g~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~-~-~~~~~--~~~~~~~~~~~~~~~~~~~-G~~~~~~~~~ 273 (503)
|.|...+++.+..++.++..+.+.+..+... ++.... . +.+.. ......+..++...+-++. +.-..+-.+.
T Consensus 176 g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~tR 252 (484)
T PRK11375 176 GGKVLNKFTAILNPCIYIVFGGMAIWAISLV---GIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDFTQ 252 (484)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccchhc
Confidence 9999999999999988777666655544432 222111 1 11000 1111223333222111111 2112233444
Q ss_pred hhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHh-cccCCCCCCCCchHHHHHHcchhHHHHHHHHHHHHHHHHHHH-hhh
Q 010690 274 EVKNPQRDLPLGIGTALSICCALYMLVSIVIVG-LVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLM-GSI 351 (503)
Q Consensus 274 e~k~P~k~ip~~~~~~~~~~~v~y~l~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~-~~~ 351 (503)
..|+| |+.-++...++.+...+..+...++.. ..........+|. +++.+....++..+..+.++++..++.. +++
T Consensus 253 y~k~~-~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~-~i~~~~~~~~~~~~a~l~~v~a~~~tN~~~N~ 330 (484)
T PRK11375 253 NAHSF-RAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVL-DIVQRWDSLFASFFAVLVILMTTISTNATGNI 330 (484)
T ss_pred ccCCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHH-HHHHHhcchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44665 555566666666665554333333221 1111011123343 3444433355556666777777777754 555
Q ss_pred cchhHHHHHHHhCCCCchhhccccCCCCCchHHHHHHHHHHHHHHHhhCHH
Q 010690 352 LPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVS 402 (503)
Q Consensus 352 ~~~sr~l~~la~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~ 402 (503)
+.+.--+.. .+||.+ +++ ++.++.++++.++..+..++
T Consensus 331 ys~~~~l~~-----l~pk~i---~~~-----~~~~i~~iig~~~~pw~~~~ 368 (484)
T PRK11375 331 IPAGYQIAA-----LAPTKL---TYK-----NGVLIASIISLLICPWKLME 368 (484)
T ss_pred ccHHHHHHH-----hCcCcc---chh-----hHHHHHHHHHHHhccHHHhc
Confidence 555444433 344322 222 35666666666666555443
No 61
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=98.95 E-value=2e-10 Score=117.88 Aligned_cols=359 Identities=15% Similarity=0.111 Sum_probs=202.9
Q ss_pred cccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChH-HHHHHHHHHHHHHHHHHHHHHhhhhCC---CCCccccchHHHh
Q 010690 49 KNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCP---SAGSAYHYSYICV 124 (503)
Q Consensus 49 r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~-~i~~~il~~l~~~~~a~~~~el~~~~p---~~Gg~~~~~~~~l 124 (503)
|+-|.+++++.-+.+++|+|.+..|.. ...+|.. ++...++.+++...+...+.+.....+ +.....+-.++.+
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~a--f~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~ 78 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYA--FAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAF 78 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHH--HHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 467899999999999999999999975 3556654 777788888888888888888888764 3344555668889
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHH
Q 010690 125 GEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKEST 204 (503)
Q Consensus 125 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~ 204 (503)
||+.+++......+.....+..+....++.+...+...... ........ .++...++..+. -.|..+
T Consensus 79 G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~--------~~~~~~~~---~~i~~~i~~pls--~~~~l~ 145 (409)
T PF01490_consen 79 GPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD--------LFISRYVW---IIIFALIVLPLS--FLKNLK 145 (409)
T ss_pred cccccccccchheeccccccceeEEEeeeeeeccccccccc--------cccccccc---cccccccccccc--ccchhh
Confidence 99999999888887777777777777777777665432110 00111111 112222221111 234444
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHhhhcccCCCCCCCCCCCCCchhhhHHHHHHHHHHhhhchHHHhhhhhhhcCCCC--
Q 010690 205 IAQAIVTTANVLAMLF--VIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQR-- 280 (503)
Q Consensus 205 ~~~~~~~~~~~~~~l~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~k~P~k-- 280 (503)
.+........+..... +.+............+...........+.++...+....++|.+......+.+|+|+|+|
T Consensus 146 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~ 225 (409)
T PF01490_consen 146 SLRYLSILGLFSIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFK 225 (409)
T ss_pred HHHHHhhhhhhccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCcccc
Confidence 3332222222222211 111111111111111111111122344567888899999999999999999999999864
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCchHHHHHHcchh-HHHHHHHHHHHHHHHHHHHhhhcchhHHHH
Q 010690 281 DLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMH-WASYVITIGAVTALCSTLMGSILPQPRILM 359 (503)
Q Consensus 281 ~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~l~~~~~~~~~~~s~~~~~~~~sr~l~ 359 (503)
...+....+...++++|.++...-+...+.+ .++ .++.+.... +...+..+...+..+.+..-..+...+.+.
T Consensus 226 ~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~-~~~-----~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~ 299 (409)
T PF01490_consen 226 KMKKVLSISMIICFIIYLLFGIFGYLAFGDS-VQG-----NILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLE 299 (409)
T ss_pred ccceeeeehhhhhhHHhhhhhhcccceeeee-ecc-----hhhhcCCCcccccccccccchhhhhhccccccchhHhhhh
Confidence 3459999999999999998888777665432 111 122222211 344555555555655555555555555665
Q ss_pred HHHhCC-----CCchhhccccCCCCCchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCC
Q 010690 360 AMARDG-----LLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGT--LLAFTMVAISVLILRYVP 430 (503)
Q Consensus 360 ~la~d~-----~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~i~~~~~--li~~~~~~~~~l~~~~~~ 430 (503)
..-+++ ..++.-.+ ++..+.-.+..++ .....+-....+++.+.++.+... .+.|.+.++.+++.++++
T Consensus 300 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~ 375 (409)
T PF01490_consen 300 NLLFKRAASSRDSPKNTPS-SRWLRYLIRIILV-LLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRK 375 (409)
T ss_pred hheeccccccccccccccc-cceeeeeeecchh-hhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhccc
Confidence 554421 11100000 0000111111111 111112233457777777666554 456666666666665544
No 62
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=98.91 E-value=1.9e-06 Score=86.75 Aligned_cols=324 Identities=13% Similarity=0.059 Sum_probs=167.1
Q ss_pred HhhhhhhhhHHHHHHHHHHhhcChH---HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHhcchHHHHHHHHH
Q 010690 60 GVGSTIGAGVYILVGTVAREHSGPA---LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWAL 136 (503)
Q Consensus 60 ~i~~~iG~G~~~~~~~~~~~~~G~~---~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~lg~~~g~~~~~~~ 136 (503)
-++.=.|+|++..|.... +.+|.. +.++++++++..-+.+..... ...|+.....+|. ||+.|.+.....
T Consensus 17 LFamFFGAGNLIFPp~LG-~~aG~~~~~a~~GF~iT~VglPlLgiiava-----~~~g~~~~l~~rv-~~~f~~~f~~~i 89 (439)
T PRK15433 17 TFALFVGAGNIIFPPMVG-LQAGEHVWTAAFGFLITAVGLPVLTVVALA-----KVGGGVDSLSTPI-GKVAGVLLATVC 89 (439)
T ss_pred HHHHHhcCcchhccHHHH-HHhcchHHHHHHHHHHHHHHHHHHHHHHHh-----hcCCCHHHHhhhc-chHHHHHHHHHH
Confidence 345669999999998864 445543 555566666554444333221 2235666666665 888877665444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 010690 137 ILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVL 216 (503)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~~~~~~~~~~~~~ 216 (503)
.++--. ..+..+..+...+... .|. +|..........++...++..+.+..-|.+.++.++++++.++
T Consensus 90 ~l~IGP-~~aiPRtaavsfEm~i-----~p~------~~~~~~~~~ifs~iFF~i~~~l~l~p~klvd~iGK~LTP~LL~ 157 (439)
T PRK15433 90 YLAVGP-LFATPRTATVSFEVGI-----APL------TGDSALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKII 157 (439)
T ss_pred HHHHhh-ccccCCccccchhhee-----ecc------CCcccHHHHHHHHHHHHHHHHHHcChhhHHHHhHHHHHHHHHH
Confidence 332111 1123333322222111 010 0110011113467777888888889999999999999999999
Q ss_pred HHHHHHHHHHhhhcccCCCCCCCC-CCCCC----chhh---hHHHHHHHHHHhhhchHHHhhhhhhhcCCCCCchhHHHH
Q 010690 217 AMLFVIIAGSYLGFKTGWSGYELP-TGYFP----FGVN---GMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGT 288 (503)
Q Consensus 217 ~~l~~~i~~~~~~~~~~~~~~~~~-~~~~~----~~~~---~~~~~~~~~~~~~~G~~~~~~~~~e~k~P~k~ip~~~~~ 288 (503)
.++++++.++.+...+ . ..+ ..+.. +++. ..+.+++...|+ ..-..+--....+++ |++.|....
T Consensus 158 ~l~~lii~~i~~p~g~-~---~~~~~~y~~~~f~~Gf~eGY~TMDalaal~Fg--~iii~~i~~~G~~~~-~~~~k~t~~ 230 (439)
T PRK15433 158 ALVILSVAAIVWPAGS-I---STATEAYQNAAFSNGFVNGYLTMDTLGAMVFG--IVIVNAARSRGVTEA-RLLTRYTVW 230 (439)
T ss_pred HHHHHHHHHHhcCCCC-C---CCcchhhhhhhHHHHHHhhHHHHHHHHHHHHH--HHHHHHHHHcCCCCH-HHHHHHHHH
Confidence 9999988888753221 1 111 11111 1111 111122222222 111111222234553 555555555
Q ss_pred HHHHHHHHHHHHHHHHHhc--ccCCCC----CCCCchHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHH
Q 010690 289 ALSICCALYMLVSIVIVGL--VPYYEM----DPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMA 362 (503)
Q Consensus 289 ~~~~~~v~y~l~~~~~~~~--~~~~~~----~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~sr~l~~la 362 (503)
+.++..++..+....+... ...... +...-......+..++++..++.+.+++++++++++ ++++.+
T Consensus 231 ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIG-------Li~a~a 303 (439)
T PRK15433 231 AGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVG-------LTCACA 303 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 5555444433332222222 111111 112223345555677999999999999999999999 555555
Q ss_pred hCCCCchhhccccCCCCCchHH-HHHHHHHHHHHHHhh---CHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010690 363 RDGLLPPFFSDVNKTTQVPVKS-TIVTGIVAAALAFFM---DVSALAGMVSVGTLLAFTMVAISVLI 425 (503)
Q Consensus 363 ~d~~lP~~~~~~~~~~~~P~~a-~~~~~~~~~~~~~~~---~~~~l~~i~~~~~li~~~~~~~~~l~ 425 (503)
++ |.+.-+ .+++. +.+..+++..+.-++ ......++.....-+++.++.+..+.
T Consensus 304 ~~------f~~~~~---isY~~~v~i~~l~S~~lSn~G~~~II~~s~PiL~~iYP~~IvLill~l~~ 361 (439)
T PRK15433 304 EF------FAQYVP---LSYRTLVFILGGFSMVVSNLGLSQLIQISVPVLTAIYPPCIALVVLSFTR 361 (439)
T ss_pred HH------HHhhcC---CcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 53 333211 33332 334444444444433 23445566666666666666666553
No 63
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.85 E-value=1.7e-05 Score=81.36 Aligned_cols=288 Identities=12% Similarity=0.001 Sum_probs=161.4
Q ss_pred ccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHhcch
Q 010690 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEG 127 (503)
Q Consensus 48 ~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~lg~~ 127 (503)
.|++++|.....-.++.++++.+.+....+... |...++..+...+...+.++.+.+.-++.+ .-..++|.++-+|++
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~T~~e~l~~Ryg~~ 79 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAY-GFAIGFYELGALVLLIILGWLFVPIFINNG-AYTMPEYLEKRFGKR 79 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCchhHHHHHHhCch
Confidence 378999999888888888888888877765544 433333233333344455666666655543 457889999999985
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHHHH
Q 010690 128 -VAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIA 206 (503)
Q Consensus 128 -~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~~~ 206 (503)
...+.++...+..+...+.+..+.+..++..++ +|.+.. +.+..++++......|.|.+.+.
T Consensus 80 ~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g----i~~~~~-------------~ii~~~i~~~Yt~~GG~~av~~T 142 (407)
T TIGR00813 80 ILRGLSVLSLILYIFLYMSVDLFSGALLIELITG----LDLYLS-------------LLLLGAITILYTVFGGLKAVVWT 142 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----chHHHH-------------HHHHHHHHHHHHHHcchHHHHHH
Confidence 555667777777777888899999988888776 444422 12333444566777899988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh--c--------ccCCCC---CCC-CCCCCCch-hhhH---HHHHHHHHHhhhchHHH
Q 010690 207 QAIVTTANVLAMLFVIIAGSYLG--F--------KTGWSG---YEL-PTGYFPFG-VNGM---LAGSATVFFAFIGFDAV 268 (503)
Q Consensus 207 ~~~~~~~~~~~~l~~~i~~~~~~--~--------~~~~~~---~~~-~~~~~~~~-~~~~---~~~~~~~~~~~~G~~~~ 268 (503)
..+=..++++..+++.+..+... . +..... ... .....+.. ...+ ..+.+..... .+.+
T Consensus 143 d~iQ~~i~~~~~i~~~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~-- 219 (407)
T TIGR00813 143 DTIQAVIMILGTFILPVFAFSEVGGLGTFVEKASQAAPTNPSPDDLYDFFRDPSTSDLPWGAGVFGLPHVALW-YWTN-- 219 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCccchhhhccCCCCCcccCCChHHHHhChHHHHHH-HhcC--
Confidence 77766666665544444433211 0 000000 000 00000100 0001 0011111000 0111
Q ss_pred hhhhhh---hcCCCCCchhHHHHHHHHHHHHHHHHHHH---HHhccc----CCC----CCCCCchHHHHHHcchhHHHHH
Q 010690 269 ASTAEE---VKNPQRDLPLGIGTALSICCALYMLVSIV---IVGLVP----YYE----MDPDTPISSAFASHGMHWASYV 334 (503)
Q Consensus 269 ~~~~~e---~k~P~k~ip~~~~~~~~~~~v~y~l~~~~---~~~~~~----~~~----~~~~~p~~~~~~~~~~~~~~~l 334 (503)
..+... .|| +|+.+|+...+.....+.+.+..+. .....+ ..+ .+++..+.....+..++|+.-+
T Consensus 220 ~~~~qR~~a~ks-~~~~r~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~lp~~l~gl 298 (407)
T TIGR00813 220 QVIVQRCLAAKS-AKHAKKGCLISGVLKLLPMFGAVLPGLIARALYTDIDPALAGAVNQNSDQAYPLLVQELMPPGLAGL 298 (407)
T ss_pred HHHhhHHHhcCC-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhcccCCChhhHHHHHHHHHcCcchHHH
Confidence 111111 255 3788898888876655554333221 111122 111 1334444555666677888889
Q ss_pred HHHHHHHHHHHHHHhhhcchhHHH
Q 010690 335 ITIGAVTALCSTLMGSILPQPRIL 358 (503)
Q Consensus 335 ~~~~~~~~~~~s~~~~~~~~sr~l 358 (503)
+.++++.+..+|..+.+...+-++
T Consensus 299 ~~agilaA~mST~~s~l~a~ss~~ 322 (407)
T TIGR00813 299 FLAAILAAVMSTLSSQLNSASTVF 322 (407)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHH
Confidence 999999999988888776666554
No 64
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.84 E-value=2.3e-05 Score=78.96 Aligned_cols=245 Identities=12% Similarity=0.063 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 010690 85 LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADS 164 (503)
Q Consensus 85 ~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~lg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 164 (503)
++++.+++-++..+.....+.++.+...+ .+.-.+..+|.+-+.+.....++.+....+++....+..+... ..
T Consensus 54 si~aillG~llG~i~~A~~s~~Ga~~Glp--qmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~----~~ 127 (442)
T COG1457 54 SLLAILLGNLLGGIFMAYFSYQGARTGLP--QMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG----TG 127 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCC--hheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC----CC
Confidence 66667777777666666677777655432 4555566789998888888888888877777776666542211 22
Q ss_pred hhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCC
Q 010690 165 LPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYF 244 (503)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 244 (503)
.|.+. ..++..+++++....|.|...+++++..+.+.+..+......+- ............
T Consensus 128 ~~~~~--------------~ili~g~l~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l~~~~~~--~~~~~~~~~~~~--- 188 (442)
T COG1457 128 LPVWA--------------GILIIGVLMTLVTIFGYRALHKLERIAVPLLLLLFLYLLALLFR--SKGGLDALWVKG--- 188 (442)
T ss_pred CcHHH--------------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccccceeeccC---
Confidence 33332 14566667888899999999999999999887777666554432 111111111111
Q ss_pred CchhhhHHHHHHHHHHhhhchH-HHhhhhhhhcCCC-CCchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCchHHH
Q 010690 245 PFGVNGMLAGSATVFFAFIGFD-AVASTAEEVKNPQ-RDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSA 322 (503)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~G~~-~~~~~~~e~k~P~-k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~~~ 322 (503)
|..+.++..++..++=.+..+. -.+-.+.-.|+|+ +++-.+...+......+..+.........+ +.+ +..+.
T Consensus 189 ~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g----~~~-~~~~~ 263 (442)
T COG1457 189 PTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTPSKAFLAAVLGFFLGTSFMMILGAALAAAAG----NAD-SIADV 263 (442)
T ss_pred CCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCc-hHHHH
Confidence 2223334443333222222221 1222333334443 133333333333333333333333333222 222 45555
Q ss_pred HHHcchhHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHH
Q 010690 323 FASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAM 361 (503)
Q Consensus 323 ~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~sr~l~~l 361 (503)
....++ ++.+..+++.++..++..-++|+++=-...+
T Consensus 264 ~~~~G~--~g~~~~lil~l~~~ttN~~nlYsa~ls~~~i 300 (442)
T COG1457 264 MLGLGG--FGLPAILILVLGTVTTNANNLYSAGLSFANI 300 (442)
T ss_pred HHhccc--HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 545443 5567777777788887777666655554444
No 65
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=98.84 E-value=7.6e-06 Score=82.51 Aligned_cols=326 Identities=15% Similarity=0.093 Sum_probs=172.8
Q ss_pred hhhhhhhhHHHHHHHHHHhhcChH---HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHhcchHHHHHHHHHH
Q 010690 61 VGSTIGAGVYILVGTVAREHSGPA---LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALI 137 (503)
Q Consensus 61 i~~~iG~G~~~~~~~~~~~~~G~~---~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~lg~~~g~~~~~~~~ 137 (503)
++.-.|+|++..|.... +.+|.. +.++++++++..-..+... .-...|+.+...+|. ||+.|.+......
T Consensus 13 FamFFGAGNLIFPp~lG-~~aG~~~~~a~~GF~lTgV~lP~Lgvia-----~~~~~~~~~~l~~~v-~~~f~~if~~~i~ 85 (427)
T PF05525_consen 13 FAMFFGAGNLIFPPFLG-QQAGSNWWPAMIGFLLTGVGLPLLGVIA-----VAKSGGGIEDLASRV-GPKFALIFTILIY 85 (427)
T ss_pred HHHHhCCccccchHHHH-HHhcchHHHHHHHHHHHHHHHHHHHHHH-----HhhcCCCHHHHhccc-CcHHHHHHHHHHH
Confidence 35679999999998864 445543 5556666665544444332 222234555555554 8888877765444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCC-CCccchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 010690 138 LEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIP-GLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVL 216 (503)
Q Consensus 138 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~i~~~g~k~~~~~~~~~~~~~~~ 216 (503)
+.-.. ..+..+..+...+.... |.. + +..+......++...++..+.+..-|.+.++.++++++.++
T Consensus 86 l~IGP-~~aiPRtaa~sfe~~i~-----p~~------~~~~~~~~~ifs~iFF~i~~~l~~~p~kivd~iGk~LTP~LL~ 153 (427)
T PF05525_consen 86 LSIGP-LFAIPRTAAVSFEMGIA-----PFF------PENSNISLLIFSIIFFAITYLLSLNPSKIVDRIGKFLTPILLI 153 (427)
T ss_pred HHHHh-cccCcchhhhhHHHhhh-----ccC------CcccccchhhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHH
Confidence 32221 11233333322221111 110 1 11122223467777888888899999999999999999999
Q ss_pred HHHHHHHHHHhhhcccCCCCCCCCCCCCCchhhhHHHHHHHH--------HHhhhchHHHhhhhhhhcCCCCCchhHHHH
Q 010690 217 AMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATV--------FFAFIGFDAVASTAEEVKNPQRDLPLGIGT 288 (503)
Q Consensus 217 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~G~~~~~~~~~e~k~P~k~ip~~~~~ 288 (503)
.++++++.++.+...+ ..... +.+..+ .+..|+.-+ ...|...-..+--....+|+ |+..|.+..
T Consensus 154 ~l~ilii~~i~~p~g~-~~~~~--~~y~~~---~f~~Gf~eGY~TMD~laal~Fg~iIi~~i~~~g~~~~-k~~~~~~~~ 226 (427)
T PF05525_consen 154 LLAILIIKGIFSPIGP-PQAPS--GAYASN---PFFKGFLEGYQTMDALAALAFGIIIINAIRQKGYKDK-KEIKKYTIK 226 (427)
T ss_pred HHHHHHHHHHHcCCCC-ccccc--hhhhhh---HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHH
Confidence 9999998888753222 11111 111111 122222211 11122222122222223343 556666666
Q ss_pred HHHHHHHHHHHHHHHHHhccc--CCC----CCCCCchHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHH
Q 010690 289 ALSICCALYMLVSIVIVGLVP--YYE----MDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMA 362 (503)
Q Consensus 289 ~~~~~~v~y~l~~~~~~~~~~--~~~----~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~sr~l~~la 362 (503)
+.++..++..+....+..... ... .+....+..+.++..|+.+..++.+.+.+++++++++....++.....+
T Consensus 227 ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~- 305 (427)
T PF05525_consen 227 AGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSEL- 305 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 665555554444333333211 111 1222345556666688899999999999999999999666666555554
Q ss_pred hCCCCchhhccccCCCCCchHHHH-HHHHHHHHHHHhh---CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010690 363 RDGLLPPFFSDVNKTTQVPVKSTI-VTGIVAAALAFFM---DVSALAGMVSVGTLLAFTMVAISVLILR 427 (503)
Q Consensus 363 ~d~~lP~~~~~~~~~~~~P~~a~~-~~~~~~~~~~~~~---~~~~l~~i~~~~~li~~~~~~~~~l~~~ 427 (503)
.+ +.+++..+ +..+++.++.-++ -.....++.....-++..++.+..+.-.
T Consensus 306 ------------~~--kisY~~~v~i~~i~S~~ian~Gl~~Ii~~s~PiL~~iYP~~IvLIll~l~~~~ 360 (427)
T PF05525_consen 306 ------------FP--KISYKVWVIIFTIFSFIIANLGLDQIIKISVPILMFIYPVAIVLILLNLFDKF 360 (427)
T ss_pred ------------hc--ccChHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 22 23444333 3444444444333 2233445555555566666655555333
No 66
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.84 E-value=7e-05 Score=77.59 Aligned_cols=111 Identities=6% Similarity=-0.047 Sum_probs=76.8
Q ss_pred cccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhc-Ch-HHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHh
Q 010690 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHS-GP-ALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICV 124 (503)
Q Consensus 47 l~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~-G~-~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~l 124 (503)
.+|+.++++.+.+=++..+....+..-+.. ...+ +. .++++.+++.++........+..+.++-. ..+...|..+
T Consensus 10 ~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l-~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~Gl--~~~v~sR~~F 86 (442)
T TIGR00800 10 EERTWSFLNYFSLWLGAAFNIATWAIGALG-LPLGLSWWQSVIAIILGNLLGGIFVALNSRAGAKYGL--PFPVLSRASF 86 (442)
T ss_pred ccCCccHHHHHHHHHHHhhhHHHHHHHHHH-HhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHhCC--Ccchhhhhhh
Confidence 346789999988877666655544443332 2221 22 36777777777766666677777776643 4677788889
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010690 125 GEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFG 160 (503)
Q Consensus 125 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (503)
|.+-+.+.+....+..+...+.+....++.+...++
T Consensus 87 G~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~ 122 (442)
T TIGR00800 87 GIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLD 122 (442)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999888888888888888888888888877766654
No 67
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.82 E-value=4.8e-05 Score=79.76 Aligned_cols=289 Identities=15% Similarity=0.115 Sum_probs=155.3
Q ss_pred ccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChH-HHHHHH--HHH-HHHHHHHHHHHHhhhhCCCCCccccchHHH
Q 010690 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFL--IAG-IASAFSAFCYAELASRCPSAGSAYHYSYIC 123 (503)
Q Consensus 48 ~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~-~i~~~i--l~~-l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~ 123 (503)
.|++++|-..+...++.++++.+.+....+... |.. .+++.. ... +.....+.-+.++.+++. .-...+|.++-
T Consensus 40 gr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~T~~e~l~~R 117 (483)
T PRK09442 40 NRSMGGFVLAMTLIATYISASSFIGGPGAAYKY-GLGWVLLAMIQVPTVWLSLGILGKKFAILARKYN-AVTLNDMLRAR 117 (483)
T ss_pred CCCccHHHHHHHHHHHHhhHhHHhCChhHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CccHHHHHHHH
Confidence 478999888887778888888877776655444 432 221111 111 111223334455566653 34688899988
Q ss_pred hcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhh
Q 010690 124 VGEG-VAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKE 202 (503)
Q Consensus 124 lg~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~ 202 (503)
+|++ ...+.+....+..+...+.+..+.+..++..++ +|.+.. +.+..++++....+.|.|.
T Consensus 118 yg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g----i~~~~~-------------iii~~~iv~iYt~~GGl~a 180 (483)
T PRK09442 118 YQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG----ISYETG-------------LLIFGITVALYTAFGGFRA 180 (483)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCHHHH-------------HHHHHHHHHHHHHhccHHH
Confidence 8865 455666666666666677888888888888776 343321 1223334466667788998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh--c-------ccCCCCCCCCCCCCC-chhhhHHHHHHHHHHhhhchHHHhhhh
Q 010690 203 STIAQAIVTTANVLAMLFVIIAGSYLG--F-------KTGWSGYELPTGYFP-FGVNGMLAGSATVFFAFIGFDAVASTA 272 (503)
Q Consensus 203 ~~~~~~~~~~~~~~~~l~~~i~~~~~~--~-------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~G~~~~~~~~ 272 (503)
+.+...+-.+++++..+++.+..+... . ++.......+.+..+ ..+..+........+...+......=.
T Consensus 181 v~~TD~iQ~~i~~~~~~vi~~~~~~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~ 260 (483)
T PRK09442 181 VVLTDALQGIVMLVGTVILLIGVIHAGGGLENAVQTLQAIDPQLVTPQGADDILSPPFMTSFWILVCFGVIGLPHTAVRC 260 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCccccCCCCCCccccHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 888777777776666555544333211 0 000000000100000 011111110000111111211111111
Q ss_pred hhhcCCCCCchhHHHHHHHHHHHHHHHHHHHH---HhcccCCCCCCCCchHHHHHHcchhHHHHHHHHHHHHHHHHHHHh
Q 010690 273 EEVKNPQRDLPLGIGTALSICCALYMLVSIVI---VGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMG 349 (503)
Q Consensus 273 ~e~k~P~k~ip~~~~~~~~~~~v~y~l~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~ 349 (503)
=..||+ |+..|+...+.+...++++...+.- ....|. ..+++..+.....+..++|+..++.++++.+..+|..+
T Consensus 261 ~aaks~-~~a~~~~~~~~~~~~~~~~~~~~~G~~~~~~~p~-~~~~~~~~p~l~~~~lp~~l~gl~~a~~~aA~mST~~s 338 (483)
T PRK09442 261 MSYKDS-KALHRGIIIGTIVVGFLMFGMHLAGALGRAVLPD-LTVPDKVIPTLMLKVLPPFAAGIFLAAPMAAIMSTVDS 338 (483)
T ss_pred HHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCccchHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 114664 7788888887766655554333221 112332 12334445555667778899889889999999988888
Q ss_pred hhcchhHH
Q 010690 350 SILPQPRI 357 (503)
Q Consensus 350 ~~~~~sr~ 357 (503)
.+...+-+
T Consensus 339 ~l~~~ss~ 346 (483)
T PRK09442 339 QLLQSSST 346 (483)
T ss_pred HHHHHHHH
Confidence 77655543
No 68
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.81 E-value=4.7e-05 Score=79.67 Aligned_cols=287 Identities=15% Similarity=0.078 Sum_probs=156.5
Q ss_pred ccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChH-HHHHHH---HHHHHHHHHHHHHHHhhhhCCCCCccccchHHH
Q 010690 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFL---IAGIASAFSAFCYAELASRCPSAGSAYHYSYIC 123 (503)
Q Consensus 48 ~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~-~i~~~i---l~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~ 123 (503)
.|+++++.......++.+|.+.+.+....+... |.. ..+.+. .+.+.....+.-+.++.+++ +.-..++|.++-
T Consensus 39 gr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~T~~e~l~~R 116 (471)
T TIGR02119 39 GRSMGGFVLAMTLVATYGSASSFIGGPGIAYNY-GLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKY-NAITINDVLKAR 116 (471)
T ss_pred CCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHHH
Confidence 478999999988888888888887776654443 432 111111 11111111222334444544 334788999999
Q ss_pred hcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhh
Q 010690 124 VGEG-VAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKE 202 (503)
Q Consensus 124 lg~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~ 202 (503)
+|++ ...+.+....+..+.....+..+.+..++..++ +|.+.. +.+..++++....+.|.|.
T Consensus 117 yg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g----i~~~~~-------------iii~~~iv~iYt~~GG~~a 179 (471)
T TIGR02119 117 YNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG----LSYLTA-------------LFIFSSSVLIYTTFGGFRA 179 (471)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCHHHH-------------HHHHHHHHHHHHHhhhHHH
Confidence 9965 455666666666666667788888888888776 444432 1223334566677789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC------CCCC---CCCCCchhh--hHHHHHH-HHHHhhhchHHHhh
Q 010690 203 STIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSG------YELP---TGYFPFGVN--GMLAGSA-TVFFAFIGFDAVAS 270 (503)
Q Consensus 203 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~------~~~~---~~~~~~~~~--~~~~~~~-~~~~~~~G~~~~~~ 270 (503)
+.+...+-.+++++..+++.+..+... +++.. ...+ ....+.++. .+...+. ...+...+......
T Consensus 180 v~~td~iQ~~v~~~~~~~~~~~~l~~~--gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~~ 257 (471)
T TIGR02119 180 VALTDAIQGIVMFTGTTILLIAVIKAG--GGVEKIMEKLKDIDPNLITPFGGDGGLTKPFVASFWILVGIGVIGLPQTAV 257 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHhcCccccCCCCCCcchhhhHHHHHHHHHHHHHhCchHHHH
Confidence 988887777777766655544433211 01100 0000 001111100 1111110 00111112221111
Q ss_pred hhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHh---cccCCCCCCCCchHHHHHHcchhHHHHHHHHHHHHHHHHHH
Q 010690 271 TAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVG---LVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTL 347 (503)
Q Consensus 271 ~~~e~k~P~k~ip~~~~~~~~~~~v~y~l~~~~~~~---~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~s~ 347 (503)
=.-..||+ |+..|+...+.+...+++....+.-.. ..| +..+++..+.....+..++++.-++..+++.+.++|.
T Consensus 258 R~~aak~~-~~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p-~~~~~d~~~p~~~~~~lp~~~~gl~~a~llaA~mST~ 335 (471)
T TIGR02119 258 RCMSYKDS-KAMHRAMIIGTIVVGIIMLGMHLAGVLGRAVIP-DLTVPDKVIPLLAIKVLPPILAGIFLAAPMAAIMSTV 335 (471)
T ss_pred HHHhcCCH-HHHhhhHhHHHHHHHHHHHHHHHHHHhhhhhcc-CCCCccchHHHHHHHHchHHHHHHHHHHHHHHHHHHH
Confidence 22334664 778888888876655554443332111 122 1112344444455566778888898999999999998
Q ss_pred HhhhcchhHH
Q 010690 348 MGSILPQPRI 357 (503)
Q Consensus 348 ~~~~~~~sr~ 357 (503)
.+.+...+-.
T Consensus 336 ~s~l~~~ss~ 345 (471)
T TIGR02119 336 NSLLLQSSST 345 (471)
T ss_pred HHHHHHHHHH
Confidence 8877666554
No 69
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=98.78 E-value=4.9e-06 Score=82.91 Aligned_cols=289 Identities=14% Similarity=0.108 Sum_probs=160.8
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHhhcChH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHhcchHHHHHH
Q 010690 55 HLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIG 133 (503)
Q Consensus 55 ~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~-~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~lg~~~g~~~~ 133 (503)
.....++|+.+|.|+...-...+.++||.. .+...+...+++.+..+.+-.++++.+.+ .+-.| ++..+++.....|
T Consensus 13 GFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~~GiPlli~Ef~iGr~~~~~-~~~a~-~~l~~~~~~~~~G 90 (439)
T COG0733 13 GFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIPLLLAEFAIGRRGRKN-AVGAF-RKLAPKKKWEWIG 90 (439)
T ss_pred HHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHHHhHHHHHHHHHhhhhcCCC-hhHHH-HHhccCccchhhh
Confidence 334446788999999998887777788776 44445555666777888888888887543 22223 2222233333445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----cCCC---c-hhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhh-HH
Q 010690 134 WALILEYTIGGSAVARGISPNLAMLF----GSAD---S-LPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKE-ST 204 (503)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~---~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~-~~ 204 (503)
|.-.....+.+..+....+=.+.+.+ +... + ...+.. +... +++.....-.++.++...+..+|++. +.
T Consensus 91 ~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~-~~~~-~~~~~~~~~~~~~~lt~~iv~~GV~~GIE 168 (439)
T COG0733 91 WFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFG-QTIS-NPGLAVIFHLLFLVLTALIVSRGVKKGIE 168 (439)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHH-HHhc-CchHHHHHHHHHHHHHHHHHHHhHHhhHH
Confidence 55333434333333333322222221 1110 0 001111 1111 12222233456667778888899986 88
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc-ccCCCCCCCCCCCCCc-hhhhHHHHHHHHHHhh-hchHHHhhhhhhhcCCCCC
Q 010690 205 IAQAIVTTANVLAMLFVIIAGSYLGF-KTGWSGYELPTGYFPF-GVNGMLAGSATVFFAF-IGFDAVASTAEEVKNPQRD 281 (503)
Q Consensus 205 ~~~~~~~~~~~~~~l~~~i~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~G~~~~~~~~~e~k~P~k~ 281 (503)
|.+.++.+...+..+++++..+.... .++..-.- .+++... +...+..++...+|+. .|+......+.-+++ +.|
T Consensus 169 k~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l-~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k-~~~ 246 (439)
T COG0733 169 KANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLF-KPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSSYLSK-KSD 246 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHh-cCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCc-ccc
Confidence 99999999888888777776654210 00000000 0111111 1334666777788887 688888888888876 688
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhccc---CCCCCCCC----chHHHHHHcc-hhHHHHHHHHHHHHHHHHHHHh
Q 010690 282 LPLGIGTALSICCALYMLVSIVIVGLVP---YYEMDPDT----PISSAFASHG-MHWASYVITIGAVTALCSTLMG 349 (503)
Q Consensus 282 ip~~~~~~~~~~~v~y~l~~~~~~~~~~---~~~~~~~~----p~~~~~~~~~-~~~~~~l~~~~~~~~~~~s~~~ 349 (503)
+++..+.....-+..-++..+.+....- .+....+. -+.+++.+.. +...+.++-..+.++.++|.++
T Consensus 247 l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~~~~GpgL~Fi~LP~if~~mp~G~~~~~lFFl~l~fAalTS~iS 322 (439)
T COG0733 247 LVSSALSIVLLNTLISLLAGLVIFPALFSFGADASQGPGLVFIVLPAVFNQMPLGTLFGILFFLLLLFAALTSAIS 322 (439)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeeehhHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887777766665555555443322 12111111 2334666653 3455566667777777788777
No 70
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=98.73 E-value=2e-05 Score=79.23 Aligned_cols=259 Identities=19% Similarity=0.228 Sum_probs=129.5
Q ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010690 79 EHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAML 158 (503)
Q Consensus 79 ~~~G~~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~lg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (503)
+..|....|..+++.++....-...++++..- ..+..+-.++.+||++++.......+...........+.+..++.+
T Consensus 9 A~~Gy~Llw~lll~~~~~~~~q~~~~R~~~~T--g~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll 86 (358)
T PF01566_consen 9 AQYGYSLLWVLLLSNLLKYVFQEMAARLGIVT--GKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLL 86 (358)
T ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44566666666666555555555555555432 2356777788889998888777777666666666777777666655
Q ss_pred hcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHH---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 010690 159 FGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLL---CVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWS 235 (503)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~---~~g~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~ 235 (503)
++ .|.+.. .++..+...++. ..+.|...|+..++..++.+.++...+..-.. ......
T Consensus 87 ~g----~~~~~~--------------~~~~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~f~~~~~~~~p~-~~~~~~ 147 (358)
T PF01566_consen 87 FG----IPLWIW--------------VLLVAVIAILLLWLSSGGYRRLERILKVLVAVMVLAFLIAAFIVHPD-WGEVAR 147 (358)
T ss_pred cC----CCcHHH--------------HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhcchh-HHHHhh
Confidence 53 333321 223333333333 35566666666666655544444333322110 000011
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHHhhhchHHHhhhh---hh------------hcCCCCCchhHHHHHHHHHHHHHHHH
Q 010690 236 GYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTA---EE------------VKNPQRDLPLGIGTALSICCALYMLV 300 (503)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~---~e------------~k~P~k~ip~~~~~~~~~~~v~y~l~ 300 (503)
+...+ . .|. ..++...+...-......+...+-+ ++ .|.-++|.-.++..+.++...++++.
T Consensus 148 g~~~P-~-~p~-~~~~~~~valiGttv~p~~lf~~s~~~~~k~~~~~~~~~~~~l~~~~~D~~~g~~~~~li~~ai~i~~ 224 (358)
T PF01566_consen 148 GLVVP-S-IPG-PGSLLFAVALIGTTVMPHNLFLHSSLVQEKGWTGNRSRPDEALKYARFDTIIGMIVSFLINVAILIVA 224 (358)
T ss_pred hccCC-C-Ccc-hhHHHHHHHHHHHhhhHHHHHHHHHHhhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11101 1 111 0111111111111122222211111 11 11111222223322222222222222
Q ss_pred HHHHHhcccCCCCCCCCchHHHHHHcch-hHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHh
Q 010690 301 SIVIVGLVPYYEMDPDTPISSAFASHGM-HWASYVITIGAVTALCSTLMGSILPQPRILMAMAR 363 (503)
Q Consensus 301 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~l~~~~~~~~~~~s~~~~~~~~sr~l~~la~ 363 (503)
+.++. -+..+.++.....+.++...| +|..+++.++++.+.++|..+...+.++.+...-+
T Consensus 225 A~~l~--~~~~~~~~~~~~~~~L~~~~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~~ 286 (358)
T PF01566_consen 225 AAVLY--PGGSEVETAAQAAQALEPLLGSPWARYLFAIGLFAAGFSSSITATLAGAYVLADFLG 286 (358)
T ss_pred HHHhc--ccccchhhHHHHHHHHHHhcCchHHHHhHHHHHHHHHHhhHHHhccccceehHhhhc
Confidence 22222 011112233355667777778 79999999999999999999999999998888765
No 71
>PRK11017 codB cytosine permease; Provisional
Probab=98.65 E-value=0.0004 Score=70.96 Aligned_cols=155 Identities=17% Similarity=0.078 Sum_probs=96.5
Q ss_pred ccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHhcch
Q 010690 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEG 127 (503)
Q Consensus 48 ~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~lg~~ 127 (503)
+|+ +.++.++.=++..+....+...+......+-..++++.+++.++........+..+.++-. +.+...|..+|.+
T Consensus 8 ~r~-~~~~~~~~~~g~~~~~~~~~~g~~l~~GLs~~~ai~aiilG~~i~~~~~~l~~~~G~k~G~--~~~v~sR~~FG~~ 84 (404)
T PRK11017 8 ARK-GVLSLTMVMLGFTFFSASMWAGGTLGTGLSFVDFLLAVLIGNLLLGIYTAALGYIGAKTGL--STHLLARFSFGEK 84 (404)
T ss_pred Hhc-chHhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--CHHHHHHHHhchh
Confidence 355 7788766655554444444444332221222237777777777766666666777776533 3556777789998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHHHHH
Q 010690 128 VAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQ 207 (503)
Q Consensus 128 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~~~~ 207 (503)
-+.+.+....+......+.+....+..+...++. +.. ...++..++.......|.|...+++
T Consensus 85 Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~~----~~~--------------~~~~i~~~l~~~~~~~G~~~i~~~~ 146 (404)
T PRK11017 85 GSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATGL----DIN--------------LLIVLSGLLMTVTAYFGISALTILS 146 (404)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC----CHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877777777766776666655555554431 111 0134455666677788999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 010690 208 AIVTTANVLAMLFVII 223 (503)
Q Consensus 208 ~~~~~~~~~~~l~~~i 223 (503)
.+..+...+..+...+
T Consensus 147 ~~~~p~~~~~~~~~~~ 162 (404)
T PRK11017 147 RIAVPAIALLGGYSVW 162 (404)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9988887776555444
No 72
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=98.62 E-value=0.00015 Score=73.46 Aligned_cols=330 Identities=16% Similarity=0.115 Sum_probs=170.9
Q ss_pred ccccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhc-ChH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHH
Q 010690 46 KLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHS-GPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYIC 123 (503)
Q Consensus 46 ~l~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~-G~~-~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~ 123 (503)
+.+|+.++|+.+.+=.+...-.+.+...+. +.+.| ++. ++.+.+++-++........+..++++.. +.....+..
T Consensus 36 ~~~rtWg~~~~~~~W~~~~~nv~~~~~aa~-~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~~gI--pFpv~~RaS 112 (497)
T COG1953 36 AEQRTWGWWNYFALWLGMVHNVPTYMLAAG-LFELGLSPWQALLAILVGNLIVAIFMVLNGHAGSKYGI--PFPVLSRAS 112 (497)
T ss_pred cccCcchHHHHHHHHHHhhccHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHHHHHHHhccCcccccCC--CchHHHHHH
Confidence 457899999998875555544444444444 23433 333 7777777777777666666666666543 244466677
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhcc---CCCCccchhHHHHHHHHHHHHHHhhhh
Q 010690 124 VGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQ---IPGLGIIVDPCAAILVLIVTGLLCVGI 200 (503)
Q Consensus 124 lg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~i~~~g~ 200 (503)
+|-+.+.+-...-.+.-++.-++++...+..+..++.... |.+..... ..+.+..-..+-+++-.+-..+...|.
T Consensus 113 FGi~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~--~~~~~~~~~~~~lg~tt~~~i~F~ifW~l~~l~~~~g~ 190 (497)
T COG1953 113 FGIYGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIF--PSLLIPNTLSPLLGLTTLELICFFIFWVLQLLVLFKGM 190 (497)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc--cccccCCccccccCCcHHHHHHHHHHHHHHHHHHhcCH
Confidence 8877666655555555555666666666666665553221 22111111 122222222233344445567777899
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCC-C-CCchhhhHHHHHHHHHHhhhchHHH----hhhhhh
Q 010690 201 KESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTG-Y-FPFGVNGMLAGSATVFFAFIGFDAV----ASTAEE 274 (503)
Q Consensus 201 k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~G~~~~----~~~~~e 274 (503)
+.++|++.+..++..+..+.+.+............. +.+.+ . .+..+..++.+. ......+... .=.+.+
T Consensus 191 ~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~-~~p~~~~~~~~~~w~~~~~~---~~~v~~~Atl~lN~~DFsRf 266 (497)
T COG1953 191 ESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILG-ELPAGTVSGSNSSWAFLAGI---AAWVGFWATLALNIPDFTRF 266 (497)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccc-cCCCCCCCcchhHHHHHHHH---HHHHHHHHHHhcCCchhhcc
Confidence 999999999999999998888888776433221111 11111 0 111111122221 1122222222 223444
Q ss_pred hcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccCCC-CCCCCchHHHHHHcchhHHHH-HHHHHHHHHHHHHHHhhhc
Q 010690 275 VKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYE-MDPDTPISSAFASHGMHWASY-VITIGAVTALCSTLMGSIL 352 (503)
Q Consensus 275 ~k~P~k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~-l~~~~~~~~~~~s~~~~~~ 352 (503)
.|+| |+.-++-+.++.+...+..+...+.......-. ....+|+ +++.+........ +..+...++..++.++...
T Consensus 267 a~s~-~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~-di~~~~~~~~~~~fl~~l~~~iati~~Ni~aN~ 344 (497)
T COG1953 267 AKSQ-KAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPL-DIVARFLSGFYAAFLAGLTFAVATISTNIAANI 344 (497)
T ss_pred cCCh-hhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHH-HHHHHhccchHHHHHHHHHHHHHHHhhhHHhcc
Confidence 4564 555566666666666665555554443322111 1112343 4455544333333 6666666666666554433
Q ss_pred chhHHHHHHHhCCCCchhhccccCCCCCchHHHHHHHHHHHHHHHh
Q 010690 353 PQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFF 398 (503)
Q Consensus 353 ~~sr~l~~la~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~ 398 (503)
.++- +.++ +.+||... .| ++.++..+++.++.=+
T Consensus 345 vsp~--~D~s--~l~Pk~in---~k-----rg~liaA~ial~~~PW 378 (497)
T COG1953 345 VSPG--YDLS--ALFPKYIN---IK-----RGGLIAAIIALLICPW 378 (497)
T ss_pred CChH--HHHH--Hhcccccc---hh-----hhHHHHHHHHHHHcCh
Confidence 3332 2222 23454433 22 2456666666554433
No 73
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.51 E-value=7.7e-06 Score=83.91 Aligned_cols=288 Identities=18% Similarity=0.113 Sum_probs=137.5
Q ss_pred ccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHhcch
Q 010690 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEG 127 (503)
Q Consensus 48 ~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~lg~~ 127 (503)
.|++++|...+.-+++..|.+.+.+....+... |....+..+...+...+.++.++..-++. +.-..++|.++-+|++
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~-G~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~T~~e~~~~Ryg~~ 82 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSY-GISGLWYAIGYAIGFLLFALFFAPRLRRS-GAVTIPEYLEKRYGSK 82 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT--GGGGHHHHHHHHHHHHHHHHTHHHHHHT-T--SHHHHHHHHT-HH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CcceeeeccccchhHHHHHHHHHHhhccc-chhhhhhhhhhhcCCc
Confidence 478999988888888888888887776655443 44433333333333344444444444443 2347889999999988
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHHH
Q 010690 128 V--AWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (503)
Q Consensus 128 ~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~~ 205 (503)
. ..+......+......+.+..+.+..++..++ +|.... ..+..++++....+.|.|.+.+
T Consensus 83 ~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g----i~~~~~-------------~~i~~~i~~iYt~~GGl~av~~ 145 (406)
T PF00474_consen 83 ALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG----IPYNTA-------------ILIVGVIVIIYTFFGGLRAVAW 145 (406)
T ss_dssp H-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT------HHHH-------------HHHHHHHHHHTTCTT------S
T ss_pred hhhhhhcccccchhhhhhhhccccccccchhhccc----hhhhHH-------------HHHHHHHHHHhhhhhhHhhhhH
Confidence 7 55555555666666777888888888887775 333221 1223334444566678888776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh------------cccCCCCCCCCCCCCCchhhhHHHHHHHHHHhhhchHHHhhhhh
Q 010690 206 AQAIVTTANVLAMLFVIIAGSYLG------------FKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAE 273 (503)
Q Consensus 206 ~~~~~~~~~~~~~l~~~i~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 273 (503)
...+-..++++..+++.+..+... .++...+...+.+... ...........+....|.....+...
T Consensus 146 td~iQ~~i~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~p~~~q 223 (406)
T PF00474_consen 146 TDFIQGVIMIIGAIVVLIFVLSAVGGFGGLFQNLSAAHPNFLDLFNPGGFSM--FSSPLFFLSFWIALMLGTFGAPHFWQ 223 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-GGGG-SS--SS-------SSGGGGS-TTHHHHSTHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHhhhccchhcCCchhhHHHHhhcCcccccccCCCCccc--ccchhhhHHHHHHHHhhhccchHHHH
Confidence 655555555444444443332210 0000011111111100 00000000000111223333343333
Q ss_pred hh---cCCCCCchhHHHHHHHHHHHHHHHHH------HHHHhcccCC----CCCCCCchHHHHHHcchhHHHHHHHHHHH
Q 010690 274 EV---KNPQRDLPLGIGTALSICCALYMLVS------IVIVGLVPYY----EMDPDTPISSAFASHGMHWASYVITIGAV 340 (503)
Q Consensus 274 e~---k~P~k~ip~~~~~~~~~~~v~y~l~~------~~~~~~~~~~----~~~~~~p~~~~~~~~~~~~~~~l~~~~~~ 340 (503)
.. |++ |+.+|+.+.+.....+++.... ..+....|.. ..+++..+.....+..++++.-++.++++
T Consensus 224 R~~aak~~-~~ar~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gl~~~~~~ 302 (406)
T PF00474_consen 224 RFLAAKSP-KTARKGMLIAIIFLIIFYFLTIFIGLIAIALFGLYPDAAGPSLGDPDLAFPYLAAQYLPPGLAGLFLAGIL 302 (406)
T ss_dssp HHHSSSHH-HHHHHHHHHHHGGGTTHHHHHHHHHHHH-HHHHHH-TT--S-SSSGGGHHHHHHT-TS-TTHHHHHHHHHH
T ss_pred HHHhcCCH-HHHHHHHhHHhhhheeeehHHhhhhhhhhcccccccccccccccCCcccchhhhhhhccchhHHHHHHHHH
Confidence 33 443 7788888777654444443311 1122222211 11223344456666777888888888888
Q ss_pred HHHHHHHHhhhcchhHH
Q 010690 341 TALCSTLMGSILPQPRI 357 (503)
Q Consensus 341 ~~~~~s~~~~~~~~sr~ 357 (503)
.+..+|..+.+...+-.
T Consensus 303 aA~~ST~~s~l~a~ss~ 319 (406)
T PF00474_consen 303 AAIMSTADSLLLAISSI 319 (406)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHhhhhhh
Confidence 88888888865554443
No 74
>PRK12488 acetate permease; Provisional
Probab=98.50 E-value=0.0014 Score=69.82 Aligned_cols=157 Identities=16% Similarity=0.089 Sum_probs=98.8
Q ss_pred ccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHHHHH-HHHHHHhhhhCCCCCccccchHHHhc-
Q 010690 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFS-AFCYAELASRCPSAGSAYHYSYICVG- 125 (503)
Q Consensus 48 ~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~~~~-a~~~~el~~~~p~~Gg~~~~~~~~lg- 125 (503)
.|++++|...+...++..++..+.+....+.. .|...++ +.++..++.+. .+.+++--.++. .-..++|.++-+|
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~-~G~~~~~-~~~g~~~g~~~~~~~~a~~lr~~g-~~T~~d~l~~Rf~s 142 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFM-NGYDGLL-YALGVLAGWPIILFLIAERLRNLG-KYTFADVVSYRLAQ 142 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChhHHH-HHHHHHHHHHHHHHHHHHHHHHCC-CcchHHHHHHHcCC
Confidence 57899999988777888888888877665544 3443332 33333333332 333443333332 2356777777777
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHHH
Q 010690 126 EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (503)
Q Consensus 126 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~~ 205 (503)
|....+.+....+........+..+.+..++..++ +|.+.. +.+..++.+....+.|.|.+.+
T Consensus 143 ~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g----i~~~~~-------------iii~~~i~~~Yt~~GGm~av~~ 205 (549)
T PRK12488 143 GPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG----ISYLYA-------------VVIVGALMVLYVTFGGMLATTW 205 (549)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCHHHH-------------HHHHHHHHHHHHhccchhHHHH
Confidence 55777777777777777778888888888887765 343321 1233344555666789999888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010690 206 AQAIVTTANVLAMLFVIIA 224 (503)
Q Consensus 206 ~~~~~~~~~~~~~l~~~i~ 224 (503)
.+.+=..++++..+++.+.
T Consensus 206 td~iQ~~im~~~~i~~~~~ 224 (549)
T PRK12488 206 VQIIKAVLLLSGTSFMAFM 224 (549)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8777666666655544333
No 75
>PRK00701 manganese transport protein MntH; Reviewed
Probab=98.49 E-value=0.00047 Score=70.85 Aligned_cols=96 Identities=16% Similarity=0.117 Sum_probs=60.9
Q ss_pred hhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHhcchHHHHHHHHHHHHHH
Q 010690 62 GSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALILEYT 141 (503)
Q Consensus 62 ~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~lg~~~g~~~~~~~~~~~~ 141 (503)
.+-+|.|.+....+ +-+..|....|..+++.++....-...++++..- .-|..+-.++.+|++++++......+...
T Consensus 45 ~a~idpG~i~t~~~-aGA~~Gy~LLW~llls~~~~~~~Q~~~~RlgivT--G~~l~~~ir~~~~~~~~~~~~~~~~l~~~ 121 (439)
T PRK00701 45 VGYMDPGNWATNIQ-GGSQFGYTLLWVILLSNLMAMLLQSLSAKLGIAT--GRDLAQACRDRYPRPVVWFLWIQAELAIM 121 (439)
T ss_pred hheecchHHHHHHH-HHHHHCHHHHHHHHHHHHHHHHHHHHHhHhhhhc--CCCHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 34578888776665 4455677777766666666665555555555431 22688888888999887766555544545
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 010690 142 IGGSAVARGISPNLAMLFG 160 (503)
Q Consensus 142 ~~~~~~~~~~~~~l~~~~~ 160 (503)
........+.+..++..++
T Consensus 122 ~~~~~e~~G~a~al~ll~g 140 (439)
T PRK00701 122 ATDLAEVIGAAIALKLLFG 140 (439)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 5555566666666665554
No 76
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.46 E-value=0.00096 Score=69.89 Aligned_cols=289 Identities=13% Similarity=0.073 Sum_probs=147.1
Q ss_pred ccccCHHHHHHHHhh-hhhhhhHHHHHHHHHHhhcChHHHHHHH----HHHHHHHHHHHHHHHhhhhCCCCCccccchHH
Q 010690 48 AKNLTIPHLVAIGVG-STIGAGVYILVGTVAREHSGPALALSFL----IAGIASAFSAFCYAELASRCPSAGSAYHYSYI 122 (503)
Q Consensus 48 ~r~ls~~~~~~~~i~-~~iG~G~~~~~~~~~~~~~G~~~i~~~i----l~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~ 122 (503)
.|+++.+ ..+++.+ +..+...+.+....+... |....+..+ .+.+.....+--..+++ +-+..-..++|.++
T Consensus 37 gR~lg~~-v~~ls~~as~~s~~t~lG~~g~ay~~-G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~~~~~~T~~d~l~~ 113 (493)
T COG0591 37 GRSLGPF-VYALSAAASDTSGWTFLGLPGLAYAS-GLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-KARGATTIPDFLEA 113 (493)
T ss_pred CCcCChH-HHHHHHHHHHHHHHHHhcchHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCccHHHHHHH
Confidence 4789999 5555443 345534444444434443 444333222 33334444555555666 33345578999999
Q ss_pred Hhc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhh
Q 010690 123 CVG-EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIK 201 (503)
Q Consensus 123 ~lg-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k 201 (503)
-+| +....+.+....+......+.+..+.+..++..++ .+.... +.++...++....+.|.|
T Consensus 114 Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g----i~~~~~-------------~~~~~~~v~~Yt~~gG~~ 176 (493)
T COG0591 114 RFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG----ISYVTG-------------ILIGALIVALYTFLGGLR 176 (493)
T ss_pred HcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC----CCHHHH-------------HHHHHHHHHHHHHHcChh
Confidence 999 88888999999999999999999999988877665 222211 122334445555667777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh--h------cccCCCCC--CCCCCCCCchhhhHHH---HHHHHHHhhhchHHH
Q 010690 202 ESTIAQAIVTTANVLAMLFVIIAGSYL--G------FKTGWSGY--ELPTGYFPFGVNGMLA---GSATVFFAFIGFDAV 268 (503)
Q Consensus 202 ~~~~~~~~~~~~~~~~~l~~~i~~~~~--~------~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~G~~~~ 268 (503)
.+.+...+=..++++.+..+.+..... + ..+..... +.+.. .+..+..... .....+..+..-...
T Consensus 177 av~~Td~iqg~im~i~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~i~ 255 (493)
T COG0591 177 AVVWTDFIQGLIMLIALIVIPILVLILFGGFGELFAVLASLAPLFLTHPFD-GALSPIYIISLIAWGTLFLGYFGQPHIL 255 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhcccccccCccc-ccchHHHHHHHHHHHHHHhhhhcCchhh
Confidence 666555554555555444444433321 0 00001100 00100 1111111111 111112222222222
Q ss_pred hhhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHh----cccCC------CCCCCCchHHHHHHcchhHHHHHHHHH
Q 010690 269 ASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVG----LVPYY------EMDPDTPISSAFASHGMHWASYVITIG 338 (503)
Q Consensus 269 ~~~~~e~k~P~k~ip~~~~~~~~~~~v~y~l~~~~~~~----~~~~~------~~~~~~p~~~~~~~~~~~~~~~l~~~~ 338 (503)
...-. .|++ |+.|+........-.+.|++..+++.. ..+.. ..+++..+........+||..-++...
T Consensus 256 ~r~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~g~~~~a 333 (493)
T COG0591 256 PRFMA-AKSI-KSLPKSARLAGILWPLYCLLGAFLLGLLGIAYFPLLPDLSVPLLNPELVFPYLILALFPPWIAGLLLAA 333 (493)
T ss_pred hhhhh-hccH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCHHHHHHHHHHHHChHHHHHHHHHH
Confidence 22222 3443 444544444444444444333222221 11111 123333455566666778988888888
Q ss_pred HHHHHHHHHHhhhcchhHHHH
Q 010690 339 AVTALCSTLMGSILPQPRILM 359 (503)
Q Consensus 339 ~~~~~~~s~~~~~~~~sr~l~ 359 (503)
++.+..+|....+...+-.+-
T Consensus 334 ilaAvmSt~ss~ll~~ss~~t 354 (493)
T COG0591 334 ILAAVMSTASSQLLVASSAIT 354 (493)
T ss_pred HHHHHHHHHHHHHHhhhHHHH
Confidence 888888887776665554443
No 77
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=98.42 E-value=0.00067 Score=66.95 Aligned_cols=335 Identities=16% Similarity=0.094 Sum_probs=166.0
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHhhcChH---HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHhcchHHHHH
Q 010690 56 LVAIGVGSTIGAGVYILVGTVAREHSGPA---LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLI 132 (503)
Q Consensus 56 ~~~~~i~~~iG~G~~~~~~~~~~~~~G~~---~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~lg~~~g~~~ 132 (503)
.-++-++.-.|+|+...|... -..+|.. +.++++++++..=..+.....+ ..||.....+|. ||+.|.+.
T Consensus 10 ~GfmLFalFFGAGNlIFPP~L-G~~aG~~~~~A~lGFllTgVglPlLgiIa~a~-----~g~~~~~l~~~i-~~~fg~~f 82 (431)
T COG1114 10 LGFMLFALFFGAGNLIFPPML-GLHAGEHVWPAILGFLLTGVGLPLLGIIAVAL-----YGGGVESLATRI-GPWFGVLF 82 (431)
T ss_pred HHHHHHHHHhcCCCccCChhh-hhhcCccHHHHHHHHHHHHhhHHHHHHHHhhc-----cCCCHHHHhhhc-cchHHHHH
Confidence 334445667999999999875 3455653 6666666666544443332211 223455555554 88887765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 010690 133 GWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTT 212 (503)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~~~~~~~~~ 212 (503)
.....+.--. ..+..+..+.+.+..+. |.. . ....+......++...+...+.+..-|.+.|+.+++++
T Consensus 83 ~~~iyLsIGP-ffAiPRt~~vsfe~~i~-----p~~-~----~~~~~~l~ifs~ifF~ia~~~sl~psklid~vGk~LTP 151 (431)
T COG1114 83 AIAIYLSIGP-FFAIPRTGAVSFEVGIS-----PLL-G----DSSLPSLFIFSVIFFAIAYLFSLNPSKLIDRVGKFLTP 151 (431)
T ss_pred HHHHHHHhcc-cccCCcccchhHHHhhh-----ccc-C----CCcchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhH
Confidence 5443322111 11222222222211110 000 0 00112222346777788888889999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCC----chhh-h--HHHHHHHHHHhhhchHHHhhhhhhhcCCCCCchhH
Q 010690 213 ANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFP----FGVN-G--MLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLG 285 (503)
Q Consensus 213 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~-~--~~~~~~~~~~~~~G~~~~~~~~~e~k~P~k~ip~~ 285 (503)
++++.++.+++..+... ........ +.+.. .|+. | .+..+ +...|...-..+.=..-.+++ |+..+.
T Consensus 152 ilLv~l~il~i~~~~~p-~g~~~~a~--~~y~~~pf~~GfleGY~TMDaL--Aal~FgivIv~alk~~g~~~~-~~~~~~ 225 (431)
T COG1114 152 ILLVLLLILVIAAIIPP-AGPISAAS--GAYQSQPFSKGFLEGYLTMDAL--AALAFGIVIVNALKSKGVTTK-KQIIKY 225 (431)
T ss_pred HHHHHHHHHHHHHHhCC-CCCccccc--HHHHhChHHHHHhcchHHHHHH--HHHHHHHHHHHHHHHhccCcH-HHHHHH
Confidence 99999988888765532 11111111 11111 1111 1 11111 222232222222222222332 556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccc--CCCCC---CC-CchHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhhcchhHHHH
Q 010690 286 IGTALSICCALYMLVSIVIVGLVP--YYEMD---PD-TPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILM 359 (503)
Q Consensus 286 ~~~~~~~~~v~y~l~~~~~~~~~~--~~~~~---~~-~p~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~sr~l~ 359 (503)
...+.++..+...+....+....+ .+... +. .-+....++..|+.+..++.+.+.+++++++++....++..
T Consensus 226 ~~~aglIa~i~La~iY~~L~ylGa~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aef-- 303 (431)
T COG1114 226 TIKAGLIAAILLALIYLSLFYLGATSASAAGLAANGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEF-- 303 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHhhcccccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 666665555554444444443322 11111 11 12233444446777889999999999999999954443333
Q ss_pred HHHhCCCCchhhccccCCCCCchHH-HHHHHHHHHHHHHhhC---HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 010690 360 AMARDGLLPPFFSDVNKTTQVPVKS-TIVTGIVAAALAFFMD---VSALAGMVSVGTLLAFTMVAISVLILRYV 429 (503)
Q Consensus 360 ~la~d~~lP~~~~~~~~~~~~P~~a-~~~~~~~~~~~~~~~~---~~~l~~i~~~~~li~~~~~~~~~l~~~~~ 429 (503)
|+|.-++ .-+.. +.+..+.+.++.-.+. .....++.....-+++.++++..+....+
T Consensus 304 -----------F~~~~p~--~SY~~~v~if~i~sflvan~GL~~Ii~isvPvL~~iYPiaI~Lv~l~~~~k~~~ 364 (431)
T COG1114 304 -----------FSKLVPK--LSYKTWVIIFTLISFLVANLGLEQIIKISVPVLTAIYPIAIALVLLSFARKLWK 364 (431)
T ss_pred -----------HHHhccc--ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 3333332 22222 2333444444433331 22344555555556666666665544333
No 78
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=98.42 E-value=0.0018 Score=67.92 Aligned_cols=285 Identities=12% Similarity=0.049 Sum_probs=142.4
Q ss_pred ccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHH-HHHHHHHHHHhhhhCC----CCCccccchHH
Q 010690 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIA-SAFSAFCYAELASRCP----SAGSAYHYSYI 122 (503)
Q Consensus 48 ~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~-~~~~a~~~~el~~~~p----~~Gg~~~~~~~ 122 (503)
.|++++|-..+...++.+++..+.+....+.. .|....+. .++..+ ..+..+.++..-.++. ..-..++|.++
T Consensus 35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~-~G~~~~~~-~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~ 112 (487)
T TIGR02121 35 GRSLGPFVTALSAGASDMSGWLLMGLPGALYV-TGLSELWI-AIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFEN 112 (487)
T ss_pred CCcccHHHHHHHHHHHHHhHHHHHhhHHHHHH-hhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHH
Confidence 47899988876666666776666655443433 35433322 222222 2333333433323221 22357889999
Q ss_pred Hhcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhh
Q 010690 123 CVGE---GVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVG 199 (503)
Q Consensus 123 ~lg~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g 199 (503)
-+|+ ....+.+....+......+.+..+.+..++..++ +|.+.. +.+..++.+....+.|
T Consensus 113 Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g----i~~~~~-------------iii~~~i~~~Yt~~GG 175 (487)
T TIGR02121 113 RFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG----LDYKTG-------------LLIGALIIVIYTFFGG 175 (487)
T ss_pred HhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----ccHHHH-------------HHHHHHHHHHHHHhhh
Confidence 8884 3444455555555555566777777777777765 333321 1233455566777889
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC----C--CCC---CCCCCchhhhHHHHHHHHHHhhhchHHHhh
Q 010690 200 IKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSG----Y--ELP---TGYFPFGVNGMLAGSATVFFAFIGFDAVAS 270 (503)
Q Consensus 200 ~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~----~--~~~---~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 270 (503)
.|.+.+...+=..++++..+++.+..+... +++.. . ..+ +.+.+..+..+...+ .+. .|.-...+
T Consensus 176 l~av~~TD~iQ~~i~~~~~~~v~~~~~~~~--GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~-~g~~~~p~ 249 (487)
T TIGR02121 176 FLAVSWTDFVQGLLMFFALVLVPIVALFNL--GGFGETLSAVAAINPHLLDMFKGASVIAIISLL---AWG-LGYFGQPH 249 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHhhCccccCCCCCCCHHHHHHHH---HHH-HHhccchH
Confidence 998888776666666655544444333211 11100 0 000 001111122222211 111 11111122
Q ss_pred hhhh---hcCCCCCchhHHHHHHHHHHHHHHHHHH---H---HHhcccCCC-CCCCCchHHHHHHcchhHHHHHHHHHHH
Q 010690 271 TAEE---VKNPQRDLPLGIGTALSICCALYMLVSI---V---IVGLVPYYE-MDPDTPISSAFASHGMHWASYVITIGAV 340 (503)
Q Consensus 271 ~~~e---~k~P~k~ip~~~~~~~~~~~v~y~l~~~---~---~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~l~~~~~~ 340 (503)
+... .||+ |+..|+...+.....+.++...+ . .....|... .+++..+.....+..++++.-++.++++
T Consensus 250 ~~qR~~aaks~-k~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~p~~~~~~~d~~~~~~~~~~~p~~l~gl~~a~il 328 (487)
T TIGR02121 250 IIVRFMAIRSH-KELPKARRIGMSWMILSLLGAIAVGLTGIAYFNKNPHVELVDRETIFIVLSQILFHPWIAGILLAAIL 328 (487)
T ss_pred HHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCCCcchhHHHHHHHhccHHHHHHHHHHHH
Confidence 2211 2553 67778877665433222111111 1 111112111 1233334445556667888888888888
Q ss_pred HHHHHHHHhhhcchhHHH
Q 010690 341 TALCSTLMGSILPQPRIL 358 (503)
Q Consensus 341 ~~~~~s~~~~~~~~sr~l 358 (503)
.+..+|..+.+...+-.+
T Consensus 329 aA~mST~~s~l~s~ss~~ 346 (487)
T TIGR02121 329 AAIMSTISSQLLVSSSAL 346 (487)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 889998888777666544
No 79
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=98.41 E-value=0.0019 Score=68.12 Aligned_cols=158 Identities=11% Similarity=0.016 Sum_probs=92.8
Q ss_pred ccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHHHH-HHHHHH---Hhhhh-CCCCCccccchHH
Q 010690 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAF-SAFCYA---ELASR-CPSAGSAYHYSYI 122 (503)
Q Consensus 48 ~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~~~-~a~~~~---el~~~-~p~~Gg~~~~~~~ 122 (503)
.|++++|-..+...++.+++..+.+....+.. .|....+ +.++..+... ...... ..... .+..-..++|.++
T Consensus 39 gr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~-~G~~~~~-~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~ 116 (502)
T PRK15419 39 GRSLGPFVTALSAGASDMSGWLLMGLPGAVFL-SGISESW-IAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTG 116 (502)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhhHHHHH-cCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHH
Confidence 48899999988777888888887777665443 4544322 2222222222 111111 11111 1223467888888
Q ss_pred Hhcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhh
Q 010690 123 CVGE---GVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVG 199 (503)
Q Consensus 123 ~lg~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g 199 (503)
-+|+ ....+.+....+......+.+..+.+..++..++ +|.+.. +.+..++++....+.|
T Consensus 117 Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g----i~~~~~-------------iii~~~iv~iYt~~GG 179 (502)
T PRK15419 117 RFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG----MSYETA-------------LWAGAAATILYTFIGG 179 (502)
T ss_pred HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCHHHH-------------HHHHHHHHHHHHHhhh
Confidence 8885 3444555555555556667777777777777765 333321 1233455666777889
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 010690 200 IKESTIAQAIVTTANVLAMLFVIIA 224 (503)
Q Consensus 200 ~k~~~~~~~~~~~~~~~~~l~~~i~ 224 (503)
+|.+.+...+=..++++..+++.+.
T Consensus 180 l~aV~~TD~iQ~~imi~g~i~~~~~ 204 (502)
T PRK15419 180 FLAVSWTDTVQASLMIFALILTPVI 204 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988887777666666655444433
No 80
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=98.38 E-value=0.0034 Score=63.45 Aligned_cols=287 Identities=12% Similarity=0.038 Sum_probs=136.4
Q ss_pred cccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHhcchH
Q 010690 49 KNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGV 128 (503)
Q Consensus 49 r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~lg~~~ 128 (503)
|.++...--.+...+-++-|++....+ +-+.-|....|.+++.-++....=...++++..- .-+..+-.++.++|++
T Consensus 15 ~~l~~lGPg~lva~a~iDpg~~at~~~-~Ga~~Gy~ll~vills~l~~~~~Q~~~arLgivT--G~~laq~ir~~y~~~~ 91 (416)
T COG1914 15 KLLALLGPGFLVAVAYVDPGNIATSAQ-AGAQYGYSLLWVILLSNLMAYILQELSARLGIVT--GKGLAEAIRERYLPGL 91 (416)
T ss_pred HHHHhhCcHHHHHHhccCchhHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCcHHHHHHHHccchH
Confidence 334443333333345577788777765 3445566666666666666665555556666542 1245666666688888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhh-hhhHHHHH
Q 010690 129 AWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVG-IKESTIAQ 207 (503)
Q Consensus 129 g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g-~k~~~~~~ 207 (503)
+++........-....-+...+.+-.++.+++ .|.... .++..+...++.... .|...++.
T Consensus 92 ~~~~~~~~~i~~~at~iae~~G~aial~ll~~----ip~~~g--------------~iItav~~~iil~~~~~r~~E~~v 153 (416)
T COG1914 92 GILLWILAEIAGIATDIAEVAGIAIALNLLFG----IPLIIG--------------AVITAVDVLIILLLKGYRLLERVV 153 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----ChHHHH--------------HHHHHHHHHHHHHhcchHHHHHHH
Confidence 77665555555555555666666666666654 333321 222233333333333 55555554
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCch--hhhHHHHHHHHHHhhhchHHHhhhhhhhcC---CCCCc
Q 010690 208 AIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFG--VNGMLAGSATVFFAFIGFDAVASTAEEVKN---PQRDL 282 (503)
Q Consensus 208 ~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~G~~~~~~~~~e~k~---P~k~i 282 (503)
..+...+ .+.+....+...++ +.... ...+.|.. ...........-.+.++ +....-++.+.+ .+++.
T Consensus 154 ~~l~~~~---~i~~~~~~~~~~p~--~~~~~-~~~f~P~~~~~~~l~~ii~ilGaTVmP-~i~y~~s~~v~~~~~~~~~~ 226 (416)
T COG1914 154 LILGLVL---VILFVYVAFVAPPP--WGEVA-KGDFLPSSPWTEALLLIIAILGATVMP-HILYLHSSLVQDAGIKGEEN 226 (416)
T ss_pred HHHHHHH---HHHHHHHHhhcCCC--HHHHh-ccCCCCCCcchhHHHHHHHHhccchhH-HHHHhhcceeccccccchhH
Confidence 4444333 33333333332222 11100 01111111 01122222211122222 111111222221 23555
Q ss_pred hhHHHHHHHHHHHHHHHHHH---HHH--hccc--CCCC-CCCCchHHHHHHc---chhHHHHHHHHHHHHHHHHHHHhhh
Q 010690 283 PLGIGTALSICCALYMLVSI---VIV--GLVP--YYEM-DPDTPISSAFASH---GMHWASYVITIGAVTALCSTLMGSI 351 (503)
Q Consensus 283 p~~~~~~~~~~~v~y~l~~~---~~~--~~~~--~~~~-~~~~p~~~~~~~~---~~~~~~~l~~~~~~~~~~~s~~~~~ 351 (503)
++.+..+.+++.+.+....+ .++ .... .++. ....+..++.... .++....++.+.++.+..++..+.-
T Consensus 227 ~~~~~~~~~d~~i~~~~a~lv~~ail~~aa~~~~~~~~~~~~~~~~~a~~~l~~~~G~~~~~lF~v~llasg~~s~~~~~ 306 (416)
T COG1914 227 LRALRYSRIDTIIGMIIALLVNLAILIVAAAGFHNSGPNQDVADAYDAYLLLAPLLGSAAFVLFGVALLAAGLSSTVVAT 306 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccchHHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHh
Confidence 66666665555444431111 111 1111 1111 2223444444433 3678888889999999999988877
Q ss_pred cchhHHHHHHHh
Q 010690 352 LPQPRILMAMAR 363 (503)
Q Consensus 352 ~~~sr~l~~la~ 363 (503)
+....++...-+
T Consensus 307 ~a~~~~~~g~~~ 318 (416)
T COG1914 307 YAGQIVMEGFLN 318 (416)
T ss_pred hhhHHHHHhhhc
Confidence 777776655543
No 81
>PRK09395 actP acetate permease; Provisional
Probab=98.38 E-value=0.0052 Score=65.51 Aligned_cols=154 Identities=16% Similarity=0.098 Sum_probs=94.3
Q ss_pred ccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHHHHH-HHHHHHhhhhCCCC--CccccchHHHh
Q 010690 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFS-AFCYAELASRCPSA--GSAYHYSYICV 124 (503)
Q Consensus 48 ~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~~~~-a~~~~el~~~~p~~--Gg~~~~~~~~l 124 (503)
.|++++|...+...++.+++..+.+....+.. .|...+ ++.++..++... .+.+ +.++++. -..++|.++-+
T Consensus 68 gr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~-~G~~~~-~~~~~~~~g~~~~~~~~---~~~~r~~g~~T~~d~l~~Ry 142 (551)
T PRK09395 68 GGGITGFQNGLAIAGDYMSAASFLGISALVFT-SGYDGL-IYSIGFLVGWPIILFLI---AERLRNLGKYTFADVASYRL 142 (551)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHH-hCHHHH-HHHHHHHHHHHHHHHHH---HHHHhhCCCccHHHHHHHHc
Confidence 57899988777777777888887777664443 354433 233333333222 3333 3444432 24566677777
Q ss_pred c-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhH
Q 010690 125 G-EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKES 203 (503)
Q Consensus 125 g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~ 203 (503)
| |+...+.+....+..+.....+..+.+..++..++ +|.+.. +.+..++++......|.|.+
T Consensus 143 gs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g----i~~~~~-------------ili~~~i~~iYt~~GGm~av 205 (551)
T PRK09395 143 KQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG----LNYHVA-------------VVLVGVLMMVYVLFGGMLAT 205 (551)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCHHHH-------------HHHHHHHHHHHHhhcchHHH
Confidence 7 45777777777776667777788888887777765 343321 13333455666677899988
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010690 204 TIAQAIVTTANVLAMLFVII 223 (503)
Q Consensus 204 ~~~~~~~~~~~~~~~l~~~i 223 (503)
.+...+=..++++..+++.+
T Consensus 206 ~~TD~iQ~iim~~g~ii~~~ 225 (551)
T PRK09395 206 TWVQIIKAVLLLSGATFMAF 225 (551)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 87777666666555544433
No 82
>PRK10484 putative transporter; Provisional
Probab=98.38 E-value=0.0039 Score=66.07 Aligned_cols=296 Identities=14% Similarity=0.033 Sum_probs=143.2
Q ss_pred ccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHhcch
Q 010690 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEG 127 (503)
Q Consensus 48 ~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~lg~~ 127 (503)
.|++++|-..+...++.+++..+.+....+.. .|....++.+...+...+.++.++..-.++ +.-..++|.++-+|++
T Consensus 37 gR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~p~~~r~-~~~T~~e~l~~Ryg~~ 114 (523)
T PRK10484 37 GRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYA-SGMSVMAWEVTAAIALIILALIFLPRYLKS-GITTIPDFLEERYDKT 114 (523)
T ss_pred CCCCchHHHHHHHHHHHhhHHHHhcchHHHHH-hCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHhcCch
Confidence 58899998887777888888888777665543 455433323333333333444443332332 2246888999999988
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCC--CchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHH
Q 010690 128 VAWLIGWALILEYTIG-GSAVARGISPNLAMLFGSA--DSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKEST 204 (503)
Q Consensus 128 ~g~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~ 204 (503)
...+.+....+.+... ...+..+.+..++..++.. ...|.... .+. .+.++.++.+......|.|.+.
T Consensus 115 ~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~~~gi~~~~~--------~~~-~~~~~~~i~~~Yt~~GGl~aV~ 185 (523)
T PRK10484 115 TRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSELLGISYGAA--------IWL-LVWLIGIIGAIYAVFGGLKAVA 185 (523)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHH--------HHH-HHHHHHHHHhhhhhhhhHHHHH
Confidence 6666666555554443 2223223333344433210 01111100 000 0011122335566678899888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc------------ccCCCCCCCCCC-CCCchhhhHHHHHHHHHHhhhchHHHhhh
Q 010690 205 IAQAIVTTANVLAMLFVIIAGSYLGF------------KTGWSGYELPTG-YFPFGVNGMLAGSATVFFAFIGFDAVAST 271 (503)
Q Consensus 205 ~~~~~~~~~~~~~~l~~~i~~~~~~~------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 271 (503)
+...+=..++++..+++.+..+.... ...+..++...+ ..+..+...+.+.......+.+.+ .++
T Consensus 186 ~TD~iQ~vim~i~~iiv~~~~l~~~g~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--q~~ 263 (523)
T PRK10484 186 VSDTINGIGLLIGGLLVPVFGLIALGDGSFMQGLEQLTTVHPEKLNSIGGATDPVPFPTLFTGLILVNLFYWCTN--QSI 263 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCccHHhHHHHHhhcCchhhcccCCCCCCCcHHHHHHHHHHHHHHHHhCC--HHH
Confidence 77766666665554443333222110 000111111100 011122222222221111111111 122
Q ss_pred hhh---hcCCCCCchhHHHHHHHHHHHHHHHHH---HHHHhcccCCCCCCCCchHHHHHHcchhHHHHHHHHHHHHHHHH
Q 010690 272 AEE---VKNPQRDLPLGIGTALSICCALYMLVS---IVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCS 345 (503)
Q Consensus 272 ~~e---~k~P~k~ip~~~~~~~~~~~v~y~l~~---~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~ 345 (503)
... .||+ |+..|+...+.....+.+.... +......|.+..+++.-+.....+..++++.-++.++++.+..+
T Consensus 264 ~qR~~aak~~-k~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~~d~~~p~~~~~~lp~~l~Gl~~a~ilAA~mS 342 (523)
T PRK10484 264 VQRALGAKNL-AEGQKGALLAAFFKLLGPLILVLPGIIAFHLYGDGLPNADMAYPTLVNDVLPVPLVGFFAAVLFGAILS 342 (523)
T ss_pred HHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhhHHHHHHHHHcchhHHHHHHHHHHHHHHH
Confidence 222 2553 7777888777655444433221 12222233212234444555566667788888888888888888
Q ss_pred HHHhhhcchhHH
Q 010690 346 TLMGSILPQPRI 357 (503)
Q Consensus 346 s~~~~~~~~sr~ 357 (503)
|..+.+...+-.
T Consensus 343 T~~s~l~s~st~ 354 (523)
T PRK10484 343 TFNGFLNSASTL 354 (523)
T ss_pred HHHHHHHHHHHH
Confidence 888876665544
No 83
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=98.28 E-value=0.0058 Score=65.19 Aligned_cols=153 Identities=10% Similarity=-0.039 Sum_probs=94.0
Q ss_pred ccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHhcch
Q 010690 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEG 127 (503)
Q Consensus 48 ~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~lg~~ 127 (503)
.|++++|-......++.+++..+.+....+.. .|...++..+-..+...+.++.++..-+++.. -..++|.++-+|++
T Consensus 31 Gr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~-~G~~~~~~~~g~~~~~~~~~~~~~p~~rr~~~-~T~~e~l~~Rf~s~ 108 (552)
T TIGR03648 31 GRGVPPVANGMATAADWMSAASFISMAGLIAF-LGYDGLAYLMGWTGGYVLLALLLAPYLRKFGK-YTVPDFIGDRYYSN 108 (552)
T ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-ccHHHHHHHHhCCC
Confidence 47899999887777888887777766554433 35432221111111122344556666666543 47889999988855
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHHHH
Q 010690 128 -VAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIA 206 (503)
Q Consensus 128 -~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~~~ 206 (503)
...+.+....+......+.+..+.+..++..++ +|.+.. +.+..++.+....+.|.|.+.+.
T Consensus 109 ~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g----i~~~~~-------------iii~~~i~~iYt~~GG~~aV~~T 171 (552)
T TIGR03648 109 TARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE----VDFETG-------------VFIGMAIVFFYAVLGGMKGVTWT 171 (552)
T ss_pred ceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCHHHH-------------HHHHHHHHHHHHHhhhHHHHHHH
Confidence 566666666666666677788888888877765 333321 12333444556677889988777
Q ss_pred HHHHHHHHHHHHH
Q 010690 207 QAIVTTANVLAML 219 (503)
Q Consensus 207 ~~~~~~~~~~~~l 219 (503)
..+=..++++..+
T Consensus 172 D~iQ~iim~ig~i 184 (552)
T TIGR03648 172 QVAQYIVLIVAYL 184 (552)
T ss_pred HHHHHHHHHHHHH
Confidence 6666555555443
No 84
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.28 E-value=0.0067 Score=61.58 Aligned_cols=247 Identities=13% Similarity=0.022 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 010690 84 ALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSAD 163 (503)
Q Consensus 84 ~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~lg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 163 (503)
.++.+.+++.++........+..+.++.. +.....|..+|++-+.+......+......+.+....++.++...+...
T Consensus 30 ~ai~aiilG~~i~~~~~~l~~~~G~~~Gl--~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~ 107 (386)
T TIGR02358 30 RGLLAILLGHLVGVLLLSAAGVIGADTGL--SAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLF 107 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCc--CHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36777777777666666666777776533 3666778889999888888888888888888888888888777664210
Q ss_pred chhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCC
Q 010690 164 SLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGY 243 (503)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ 243 (503)
+. .... ...+++.++.......|.|..++++.+..++..+..+.......... +......+++
T Consensus 108 --~~---------~~~~--~~~~i~~~l~~~~~~~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~- 170 (386)
T TIGR02358 108 --GE---------ESPM--LWILIVGILVTLWLLSGPLAFVWLNNWSVWLLLIATLWLLVVVFSKA---DLSELWNRAG- 170 (386)
T ss_pred --CC---------CchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---chhhhcCCCC-
Confidence 10 0000 11233344566677789999999999998888777766554443322 1111111111
Q ss_pred CCchhhhHHHHHHHHHHh-hhchHHHhhhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCchHHH
Q 010690 244 FPFGVNGMLAGSATVFFA-FIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSA 322 (503)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~-~~G~~~~~~~~~e~k~P~k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~~~ 322 (503)
+ .++..++....-. ..+....+-.+...|+| |+.-++...+......+..+.........+. .+|. +.
T Consensus 171 -~---~s~~~~~~~~~~~~~swa~~~~DysRy~k~~-~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~-----~d~~-~~ 239 (386)
T TIGR02358 171 -D---MSFAVAVELVIAMPLSWLPLIADYTRFARNP-RHVFLGTVLGYFIGSCWMYFLGLAVTLATGQ-----TDII-SI 239 (386)
T ss_pred -C---ccHHHHHHHHHHHHHHHHHHccchhhhcCCC-cceehHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCHH-HH
Confidence 1 1122222111111 11111123334444664 6666777777777777766666555544331 2343 33
Q ss_pred HHHcchhHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHh
Q 010690 323 FASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMAR 363 (503)
Q Consensus 323 ~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~sr~l~~la~ 363 (503)
+...+. ..+..+.++++..++...+.|.++--+..+.+
T Consensus 240 ~~~~g~---~~~~~~~~~l~~~~~n~~N~ys~~l~l~~l~~ 277 (386)
T TIGR02358 240 LAGAGL---GIPALLIILLSTVTTTFMDIYSAAISTGNLLP 277 (386)
T ss_pred HHhccH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 333322 23444556667777777766666666666643
No 85
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=98.28 E-value=0.003 Score=65.36 Aligned_cols=351 Identities=13% Similarity=0.054 Sum_probs=165.4
Q ss_pred cccCHHHHHHHHhhhhhhhhHHHHHHHHHHh---h------cCh--------------HHHHHHHHHHHHHHHHHHHHHH
Q 010690 49 KNLTIPHLVAIGVGSTIGAGVYILVGTVARE---H------SGP--------------ALALSFLIAGIASAFSAFCYAE 105 (503)
Q Consensus 49 r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~---~------~G~--------------~~i~~~il~~l~~~~~a~~~~e 105 (503)
.+.|.++=+++.+++-+|+|+......+.+. . ++. +.+.+|.+=++.+++.++....
T Consensus 73 PefS~~sW~aMlf~aGig~GivfwgvaEP~~~~~~pP~~~~p~s~~A~~~A~~~~~fHWG~~~Wa~Y~~~~l~~ay~~y~ 152 (485)
T PF02028_consen 73 PEFSTFSWFAMLFCAGIGAGIVFWGVAEPLYHYQSPPFGIEPGSPEAAEWAMAYSFFHWGFHAWAIYALVGLAIAYFFYN 152 (485)
T ss_dssp -SS-HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHS-STT-TTT-HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCchHHHHHHHHHHhcchhhcchhHhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHheeeee
Confidence 4788888888888999999987766433221 0 111 1233344445566666665555
Q ss_pred hhhhCCCCCccccchHHHhcchHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhcCCCchhhhhhhccCCCCccch
Q 010690 106 LASRCPSAGSAYHYSYICVGEGVAWLIGWALILEYTIGGSAVA----RGISPNLAMLFGSADSLPFFMARQQIPGLGIIV 181 (503)
Q Consensus 106 l~~~~p~~Gg~~~~~~~~lg~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (503)
-...+.-+...+....+...+.+|.+.+....++-..+.+... ..++.-++..++...+ ....
T Consensus 153 k~~~~~~ss~l~pl~g~~~~g~~g~~ID~l~i~a~~~GvatslGlg~~qi~~gl~~~~Gi~~~-------------~~~~ 219 (485)
T PF02028_consen 153 KGKPLRISSALYPLLGDRINGPLGKIIDILAIFATIFGVATSLGLGVPQISAGLSSLFGIPNT-------------FGLQ 219 (485)
T ss_dssp S---SSGGGGCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSSST-------------HHHH
T ss_pred cCCCCchhhhhhhhcCCcccCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCCCc-------------hHHH
Confidence 3333333333444444334456788888887777666544222 2223334444442221 1111
Q ss_pred hHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHHHHHHhh------------hcccCCCCCCCCCCCCC
Q 010690 182 DPCAAILVLIVTGLLCVGI----KESTIAQAIVTTANVLAMLFVIIAGSYL------------GFKTGWSGYELPTGYFP 245 (503)
Q Consensus 182 ~~~~~i~~~~~~~i~~~g~----k~~~~~~~~~~~~~~~~~l~~~i~~~~~------------~~~~~~~~~~~~~~~~~ 245 (503)
..+.+++.++.+.-...|+ |+.++++..+....++.++++.=..... ++.. .+-+. .+...
T Consensus 220 ~~ii~~~~~i~~~S~~~Gl~kGIk~LS~~n~~l~~~ll~~vl~~Gpt~fil~~~~~s~G~yl~~f~~-~s~~t--~~~~~ 296 (485)
T PF02028_consen 220 IIIIIVITVIFTISAVSGLDKGIKRLSNINVYLAFALLLFVLLFGPTVFILNLFTESIGDYLQNFFR-MSLWT--DPFGN 296 (485)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-HHT----TTTTT
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-Hhccc--ccccC
Confidence 1122333333444444454 4444444444333333322221011100 0000 00001 11112
Q ss_pred c-hhhhHHHHHHHHHHhhhchHHHhhhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCchHH---
Q 010690 246 F-GVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISS--- 321 (503)
Q Consensus 246 ~-~~~~~~~~~~~~~~~~~G~~~~~~~~~e~k~P~k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~~--- 321 (503)
. +|..-+..+.-+.|.--+--....++ .+.+ .|+++--++...+...+.+.+.-.++....=+.+.+....+.+
T Consensus 297 ~~~w~~~WTvFYwaWWiawaPfvG~FiA-rISk-GRTIRE~il~~~~~psl~~~~wf~ifGg~al~~~~~g~~~~~~~~~ 374 (485)
T PF02028_consen 297 SGQWPQDWTVFYWAWWIAWAPFVGLFIA-RISK-GRTIREFILGVLLVPSLFCFLWFSIFGGYALYLQLSGAGDLAAANE 374 (485)
T ss_dssp TTHHHHHTHHHHHHHHHHTHHHHHHHHH-HCTT-TSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSS-HHHHHH
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHh-hhcC-CcCHHHHHHHHHHhhHHHHHHHHHHHCchHHhhHhhhhhhHHHHhh
Confidence 2 25555555555555444444444444 4555 5888777777777776666655555443322122222222222
Q ss_pred ---------HHHHcchhHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhCCCCchhhccccCCCCCchHHHH--HHHH
Q 010690 322 ---------AFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTI--VTGI 390 (503)
Q Consensus 322 ---------~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~sr~l~~la~d~~lP~~~~~~~~~~~~P~~a~~--~~~~ 390 (503)
.+++. |+ +.++....++..+...++..-+++..+-.++.+| +.+++ .+.+..+ +.++
T Consensus 375 ~g~~~a~~~~l~~l--P~-~~i~~~~~lil~~~f~vTs~DS~~~~la~~s~~~-------~~ep~--~~~ri~W~~~~~~ 442 (485)
T PF02028_consen 375 QGPEAALFAFLEQL--PL-SKILSILFLILIFIFFVTSADSATYVLAMLSSKG-------DEEPP--RWLRIFWGLIIGA 442 (485)
T ss_dssp H-HHHHHHHHHHTS--TT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-------TSSS---HHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHh--hH-HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHcCC-------CCCCc--hHHHHHHHHHHHH
Confidence 22222 22 2344444444444444444444555666666553 22322 2333333 4445
Q ss_pred HHHHHHHhhC---HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 010690 391 VAAALAFFMD---VSALAGMVSVGTLLAFTMVAISVLILRYV 429 (503)
Q Consensus 391 ~~~~~~~~~~---~~~l~~i~~~~~li~~~~~~~~~l~~~~~ 429 (503)
++..+...+. .+.+..+.+++..+...+.+++.++..++
T Consensus 443 ~a~~ll~~ggl~~lq~~~ii~~lP~~~v~~~~~~~~~k~l~~ 484 (485)
T PF02028_consen 443 LAIVLLLIGGLDALQSASIIGGLPFSFVMLLMCISFIKALKE 484 (485)
T ss_dssp HHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5555555554 45677888888888888888888866543
No 86
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.28 E-value=0.0069 Score=64.50 Aligned_cols=156 Identities=16% Similarity=0.115 Sum_probs=92.0
Q ss_pred ccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHHH-HHHHHHHHhhhhCCCCCccccchHHHhc-
Q 010690 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASA-FSAFCYAELASRCPSAGSAYHYSYICVG- 125 (503)
Q Consensus 48 ~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~~-~~a~~~~el~~~~p~~Gg~~~~~~~~lg- 125 (503)
.|++++|.......++..++..+.+....+.. .|...++.. ++..++. +..+.+++--++... -...+|.++-++
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y~-~G~~~~~~~-~g~~~~~~i~~~~~a~~lrr~g~-~T~~d~l~~Rf~s 142 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVYT-SGYDGLIYS-LGFLVGWPIILFLIAERLRNLGR-YTFADVASYRLKQ 142 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHH-HHHHHHHHHHHHHHHHHHHHcCC-ccHHHHHHHHcCC
Confidence 57899987766555666777766666554443 354433322 2333333 333444444333322 345666666676
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHHH
Q 010690 126 EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (503)
Q Consensus 126 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~~ 205 (503)
|....+.+....+........+..+.+..++..++ +|.+.. +.+..++.+....+.|.|.+.+
T Consensus 143 ~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g----i~~~~~-------------iii~~~i~~~Yt~~GGm~av~~ 205 (549)
T TIGR02711 143 RPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG----LNYHVA-------------VVLVGILMVMYVLFGGMLATTW 205 (549)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCHHHH-------------HHHHHHHHHHHHHhhhhHHHHH
Confidence 44666666666666666667788888888887776 343321 1233345566677889998888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010690 206 AQAIVTTANVLAMLFVII 223 (503)
Q Consensus 206 ~~~~~~~~~~~~~l~~~i 223 (503)
.+.+=..++++..+++.+
T Consensus 206 td~iQ~~im~~g~i~~~~ 223 (549)
T TIGR02711 206 VQIIKAVLLLFGATFMAF 223 (549)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 887777666665554443
No 87
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=98.17 E-value=0.00039 Score=70.44 Aligned_cols=247 Identities=14% Similarity=0.057 Sum_probs=133.7
Q ss_pred ccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHhcc
Q 010690 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGE 126 (503)
Q Consensus 48 ~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~-~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~lg~ 126 (503)
+++-|.++++..-..++.|+|++..|.. ....|.. .+..+.+.+++.....+...+.+++.++. ......++..|+
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~a--fk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~-ty~~l~~~~~g~ 79 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYA--FKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGER-TYSSLGDLIFGK 79 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHH--HHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCC-CHHHHHHHHcCC
Confidence 3567888888888889999999998864 5667765 77778888888899999999999988775 444455666665
Q ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHHH
Q 010690 127 GVAWLIGWALILEYTIGG-SAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (503)
Q Consensus 127 ~~g~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~~ 205 (503)
.-..... ....+.-.+ ..+....++.+..........++ ..+. |..-.. .+++..+.....+.-.|...+
T Consensus 80 ~g~~~~~--v~~~~~~~g~i~yliiigd~~p~~~~~~~~~~~-~~~~---~~~~~~---~ill~~~~~i~pLsl~k~l~~ 150 (411)
T KOG1305|consen 80 LGKVDAA--VAVKCFGVGMVSYLIIIGDLLPGFIRSLFLDEE-GGSH---YLDRNF---LILLVLLFIILPLSLLKNLDS 150 (411)
T ss_pred Cceeeeh--hhHHhhhccceEEEEEEccccchhhhhcccccc-cccc---ccccee---EeehHHHHHHHHHHHHHhhhh
Confidence 4311111 111111111 11111222222212111110010 0000 000000 011111122222222233333
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCchh--hhHHHHHHHHHHhhhchHHHhhhhhhhcCCC-C
Q 010690 206 A--QAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGV--NGMLAGSATVFFAFIGFDAVASTAEEVKNPQ-R 280 (503)
Q Consensus 206 ~--~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~G~~~~~~~~~e~k~P~-k 280 (503)
+ ...+....++..+ +..+++.......... .....+... .+.+.+++...++|.........-.|+|||+ |
T Consensus 151 Lk~tS~~s~~~~~~fv---~~vv~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~ 226 (411)
T KOG1305|consen 151 LKYTSALSLASVVYFV---VLVVYKYFQGPCALGR-LSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVK 226 (411)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHhcccccCC-cccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHH
Confidence 2 2233333222222 2222222221100000 001112222 4678889999999999999999999999997 6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhcccC
Q 010690 281 DLPLGIGTALSICCALYMLVSIVIVGLVPY 310 (503)
Q Consensus 281 ~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~ 310 (503)
.+.+....+.....++|..+...-+...+.
T Consensus 227 ~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~ 256 (411)
T KOG1305|consen 227 KIQRVSNIAIILATLIYLLTGLFGYLTFGD 256 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhheecc
Confidence 788888888888899998888877777664
No 88
>PRK09950 putative transporter; Provisional
Probab=97.99 E-value=0.029 Score=58.25 Aligned_cols=148 Identities=9% Similarity=0.000 Sum_probs=74.3
Q ss_pred hhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccCCC----------C-C--CCCchHHHHHHcchhHHHHHHHHHH
Q 010690 273 EEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYE----------M-D--PDTPISSAFASHGMHWASYVITIGA 339 (503)
Q Consensus 273 ~e~k~P~k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~----------~-~--~~~p~~~~~~~~~~~~~~~l~~~~~ 339 (503)
+.+.+ .|+++--++..++...+.+.+.-.++....=+.+ . + ....+.+.+++. | ++.++....
T Consensus 333 ARISr-GRTIRe~ilg~l~~psl~~~~wf~ifGg~ai~l~~~g~~~~~~~~~~~~~~~a~~~~l~~l--P-~~~i~~~l~ 408 (506)
T PRK09950 333 TRVSR-GRKIKEVIWGLILGSSVGCWFFFGVLESYAIHQFINGVINVPQILNTLGGETAVQQLLSSL--P-AGKLFLAAY 408 (506)
T ss_pred hhhcC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHccCcchHHHHHHHhC--c-HHHHHHHHH
Confidence 44555 4888776777766666666554444332211101 1 0 111222333333 2 234444444
Q ss_pred HHHHHHHHHhhhcchhHHHHHHHhCCCCchhhccccCCCCCchHHHH--HHHHHHHHHHHhhC-H---HHHHHHHHHHHH
Q 010690 340 VTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTI--VTGIVAAALAFFMD-V---SALAGMVSVGTL 413 (503)
Q Consensus 340 ~~~~~~s~~~~~~~~sr~l~~la~d~~lP~~~~~~~~~~~~P~~a~~--~~~~~~~~~~~~~~-~---~~l~~i~~~~~l 413 (503)
++..+...++..-+++-.+-.++.+|.-+ +.+++ ...+..+ ..++++..+...+. + +..+.+.++++.
T Consensus 409 ~vl~~if~vTs~DS~s~vla~~ts~g~~~----~~~P~--~~~ri~W~i~~g~ia~~Ll~~gG~l~~lQ~~~ii~alP~~ 482 (506)
T PRK09950 409 LGIMIIFLASHMDAVAYTMAATSTRNLRE----GDDPD--RGLRLFWCVVITLIPLSILFTGASLDTMKTTVVLTALPFL 482 (506)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHcCCCCC----CCCCC--cchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 44444444454455555666666543222 12333 1222232 44444444444443 3 567778888888
Q ss_pred HHHHHHHHHHHHHhcCC
Q 010690 414 LAFTMVAISVLILRYVP 430 (503)
Q Consensus 414 i~~~~~~~~~l~~~~~~ 430 (503)
+...+.+++.++..+++
T Consensus 483 ~i~~l~~~s~~k~l~~d 499 (506)
T PRK09950 483 VILLIKVYGFIRWLKQD 499 (506)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 88888888887655433
No 89
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.91 E-value=0.00051 Score=71.26 Aligned_cols=174 Identities=16% Similarity=0.069 Sum_probs=96.7
Q ss_pred cccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhc-Ch-HHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHh
Q 010690 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHS-GP-ALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICV 124 (503)
Q Consensus 47 l~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~-G~-~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~l 124 (503)
.+|+-++++.+.+=++..+....+..-.. ....+ +. .++++.+++.++..+.....+.++.++-. ..+...|..|
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~-~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~Gl--~~~v~sR~~F 81 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGAL-GVALGLSFWQAILAILIGNLLGAILVALMGIIGPRTGL--PTMVLSRASF 81 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHH-HHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC-----HHHHTTTTS
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHH-HHccCchHHHHHHHHHHHHHHHHHHHHHhcccccccCC--Cchhcchhcc
Confidence 45788899998875555555444433322 22222 22 37777777777776766667778876643 3556667789
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHH
Q 010690 125 GEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKEST 204 (503)
Q Consensus 125 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~ 204 (503)
|.+-+.+.+....+..+...+.+....++.+...++.....+....+ ..+........+.++..++.......|.|...
T Consensus 82 G~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~l~ 160 (440)
T PF02133_consen 82 GYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGN-AIIGIALPLWVCFFIFWLIQTLFAIYGMKALR 160 (440)
T ss_dssp -TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH------------HHHHHHHHHHHHHHCTHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhh-hhhcchhhHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 98888888888887877788888888888888777543211011100 00011111111222333445556778889888
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010690 205 IAQAIVTTANVLAMLFVIIA 224 (503)
Q Consensus 205 ~~~~~~~~~~~~~~l~~~i~ 224 (503)
+++.+..++..+..+.....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~ 180 (440)
T PF02133_consen 161 RLAVIAAPILLVVFIGMLIW 180 (440)
T ss_dssp HHHHCCHHHHHHHHHHHHHH
T ss_pred hHHhhhhHHHHhhhhheeEE
Confidence 88887777665554444333
No 90
>PRK09928 choline transport protein BetT; Provisional
Probab=97.59 E-value=0.11 Score=55.50 Aligned_cols=148 Identities=9% Similarity=-0.027 Sum_probs=73.0
Q ss_pred hhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC---------CC---chHHHHHHcchhHHHHHHHHHH
Q 010690 272 AEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDP---------DT---PISSAFASHGMHWASYVITIGA 339 (503)
Q Consensus 272 ~~e~k~P~k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~~~---------~~---p~~~~~~~~~~~~~~~l~~~~~ 339 (503)
-+.+.+ .|+++--++..++...+.+.+...++....=+.+.+. +. .+.+.+++. | ++.++....
T Consensus 340 IARISR-GRTIREfilgvllvPsl~~~~WfsIfGgsal~l~~~g~~~l~~~~~~~~~~alf~~l~~l--P-~~~i~~~l~ 415 (679)
T PRK09928 340 LARISR-GRTIRQFVLGTLIIPFTFTLLWLSIFGNSALYEIIHGNAAFAEEAMAHPERGFYSLLAQY--P-AFTFSASVA 415 (679)
T ss_pred HhhhcC-CccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCccHHHHhhcchhhHHHHHHHhC--c-HHHHHHHHH
Confidence 345655 5888776666666666665555444332211101111 11 222233333 2 223333333
Q ss_pred HHHHHHHHHhhhcchhHHHHHHHhCCCCchhhccccCCCCCchHHHHHHHHHHHHHHHhhCH---HHHHHHHHHHHHHHH
Q 010690 340 VTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDV---SALAGMVSVGTLLAF 416 (503)
Q Consensus 340 ~~~~~~s~~~~~~~~sr~l~~la~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~---~~l~~i~~~~~li~~ 416 (503)
++..+...++..-+++-++-.++.+|.-| ..+++...-+.=.++.++++..+...+.+ ...+-+.++++.+..
T Consensus 416 ~il~~iFfvTSaDS~s~Vla~lts~g~~~----~~~pp~~~RifW~v~ig~la~~LL~~GGL~aLQt~sii~alPf~~I~ 491 (679)
T PRK09928 416 TITGLLFYVTSADSGALVLGNFTSKLKDI----NSDAPNWLRVFWSVAIGLLTLGMLMTNGISALQNTTVIMGLPFSFVI 491 (679)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHcCCCCC----CCCCCcceeeHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444555666666553322 11222122222233445555555555544 567778888888888
Q ss_pred HHHHHHHHHHh
Q 010690 417 TMVAISVLILR 427 (503)
Q Consensus 417 ~~~~~~~l~~~ 427 (503)
++.+++.++..
T Consensus 492 ll~~~sl~k~l 502 (679)
T PRK09928 492 FFVMAGLYKSL 502 (679)
T ss_pred HHHHHHHHHHH
Confidence 88888887653
No 91
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=97.46 E-value=0.16 Score=51.36 Aligned_cols=42 Identities=14% Similarity=0.094 Sum_probs=33.9
Q ss_pred HHHHHHcchhHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHH
Q 010690 320 SSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAM 361 (503)
Q Consensus 320 ~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~sr~l~~l 361 (503)
...++...|++..+++.++++.+.++|.++.-+.+.-++...
T Consensus 283 ~~~L~p~~G~~a~~lF~igLlaAG~sS~it~~~ag~~v~~gf 324 (390)
T TIGR01197 283 GVLLGCLFSPAAGYIFAVGLLAAGQSSGMVGTYSGQFVMEGF 324 (390)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 345555677899999999999999999999888777666666
No 92
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=97.40 E-value=0.22 Score=51.80 Aligned_cols=148 Identities=11% Similarity=-0.022 Sum_probs=76.2
Q ss_pred hhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccCCC----------CCC---CCchHHHHHHcchhHHHHHHHHH
Q 010690 272 AEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYE----------MDP---DTPISSAFASHGMHWASYVITIG 338 (503)
Q Consensus 272 ~~e~k~P~k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~----------~~~---~~p~~~~~~~~~~~~~~~l~~~~ 338 (503)
-+.+.+ .|+++--++..++...+.+.+...++....=+.+ .+. +..+.+.+++. | ++.++...
T Consensus 335 iARISr-GRTIRE~ilg~l~~psl~~~~wf~ifGg~al~~~~~g~~~~~~~~~~~~~~~alf~~l~~l--P-l~~i~~~l 410 (504)
T PRK03356 335 LARISR-GRTVRELCFGMVLGLTASTWILWTVLGSNTLLLMDKNIINIPNLIEQYGVARAIIETWAAL--P-LSTATMWG 410 (504)
T ss_pred HHHHcC-CCcHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHHcCchhHHHHHhccChhhHHHHHHHHC--c-HHHHHHHH
Confidence 345655 5888776777666666665554444332211000 111 11222333333 2 23344444
Q ss_pred HHHHHHHHHHhhhcchhHHHHHHHhCCCCchhhccccCCCCCchHHHH--HHHHHHHHHHHhhC---HHHHHHHHHHHHH
Q 010690 339 AVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTI--VTGIVAAALAFFMD---VSALAGMVSVGTL 413 (503)
Q Consensus 339 ~~~~~~~s~~~~~~~~sr~l~~la~d~~lP~~~~~~~~~~~~P~~a~~--~~~~~~~~~~~~~~---~~~l~~i~~~~~l 413 (503)
.++..+...++..-+++-.+-.++.+|.-+ +.+++ ...+..+ +.++++..+.+.+. .+..+.+.++++.
T Consensus 411 ~~il~~if~vTsaDS~t~vla~~ts~g~~~----~~~p~--~~~ri~W~v~ig~ia~~Ll~~GGl~~lQt~sii~alPf~ 484 (504)
T PRK03356 411 FFILCFIATVTLINACSYTLAMSTCREVRD----GEEPP--LLVRIGWSILVGIIGIVLLALGGLKPIQTAIIAGGCPLF 484 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHcCCCCC----CCCCC--cchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 444445555555555666777776653212 12333 2223232 44555555545443 4567788888888
Q ss_pred HHHHHHHHHHHHHhcC
Q 010690 414 LAFTMVAISVLILRYV 429 (503)
Q Consensus 414 i~~~~~~~~~l~~~~~ 429 (503)
+...+.+++.++..++
T Consensus 485 ~i~~l~~~sl~k~l~~ 500 (504)
T PRK03356 485 FVNIMVTLSFIKDAKQ 500 (504)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8888888888765543
No 93
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=97.28 E-value=0.0078 Score=63.81 Aligned_cols=67 Identities=13% Similarity=0.161 Sum_probs=47.8
Q ss_pred CHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHH-HHHHHHHHHHHHHHHHHhhhhCCCCCccccc
Q 010690 52 TIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALS-FLIAGIASAFSAFCYAELASRCPSAGSAYHY 119 (503)
Q Consensus 52 s~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~-~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~ 119 (503)
+..+.+..+++..+|.|++..-.....++||....+. .+...+++.+..+.+.-+++... .|....|
T Consensus 6 ~~~~~~l~~~g~~vglgn~wrfp~~~~~~gG~~Fli~y~~~~~~~giP~~~lE~~lGq~~~-~~~~~~~ 73 (523)
T PF00209_consen 6 SKIGFILACIGYAVGLGNIWRFPYLCYENGGGAFLIPYLLFLLLVGIPLLYLELALGQYSR-SGPIGAW 73 (523)
T ss_dssp -HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TTSHHHS
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 3456667778999999999888887778888664443 44456668888888888888764 3444445
No 94
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=97.26 E-value=0.19 Score=51.81 Aligned_cols=152 Identities=14% Similarity=0.099 Sum_probs=78.1
Q ss_pred hhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCC----------CCCchHHHHHHcchhHHHHHHHHHHH
Q 010690 271 TAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD----------PDTPISSAFASHGMHWASYVITIGAV 340 (503)
Q Consensus 271 ~~~e~k~P~k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~~----------~~~p~~~~~~~~~~~~~~~l~~~~~~ 340 (503)
.-+.+.+ .|+++.=+.+.++...+.+.+.-.++....-+.+.+ ...|-..+++....-.++.+..+..+
T Consensus 334 FIARISr-GRTIREfi~gvl~~P~~~~~~wftVfG~~ai~~~~~~~~~~~~~~~~~~~e~alf~~l~~lPl~~v~~~~~~ 412 (537)
T COG1292 334 FIARISR-GRTIREFIVGVLLIPTLFTWLWFTVFGNYALYLIINGGGGILGLVTTEGPETALFQVLSHLPLGTLTSLLAL 412 (537)
T ss_pred HHHHHhC-CccHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHhccccchhhhhhccchhhHHHHHHHhCCHHHHHHHHHH
Confidence 3455666 588877777777666666555444433221111111 01122222222211122233333333
Q ss_pred HHHHHHHHhhhcchhHHHHHHHhCCCCchhhccccCCCCCchHHHHHHHHHHHHHHHhhC---HHHHHHHHHHHHHHHHH
Q 010690 341 TALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMD---VSALAGMVSVGTLLAFT 417 (503)
Q Consensus 341 ~~~~~s~~~~~~~~sr~l~~la~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~---~~~l~~i~~~~~li~~~ 417 (503)
+..+.=.++....++-++..++.++ ..++++..-+.=.+++++++..+.+.+. ....+-+.++++.+..+
T Consensus 413 ~~i~~FfiTsaDS~s~vl~~~ss~~-------~~~pp~~~r~~W~v~~~~ia~~lL~~ggl~aLqt~~ii~alPF~~vll 485 (537)
T COG1292 413 LVIAIFFVTSADSGSYVLAMISSRG-------GEDPPRWVRVFWGVLIGLIAAVLLLIGGLEALQTAAIITALPFSLVLL 485 (537)
T ss_pred HHHHHHHhhccchHHHHHHHHhccC-------CCCChHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHccHHHHHH
Confidence 3333334455566666888887653 2233222222223355555555555554 45677788888888888
Q ss_pred HHHHHHHHHhcCC
Q 010690 418 MVAISVLILRYVP 430 (503)
Q Consensus 418 ~~~~~~l~~~~~~ 430 (503)
+.+.+.++-.+++
T Consensus 486 ~~~~sl~k~l~~d 498 (537)
T COG1292 486 VMMFSLIKDLKQD 498 (537)
T ss_pred HHHHHHHHHHHhh
Confidence 8888888665544
No 95
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=97.25 E-value=0.28 Score=49.69 Aligned_cols=237 Identities=16% Similarity=0.116 Sum_probs=131.1
Q ss_pred HHHHHHHhhhhCCCCCccccch-HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCC
Q 010690 99 SAFCYAELASRCPSAGSAYHYS-YICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGL 177 (503)
Q Consensus 99 ~a~~~~el~~~~p~~Gg~~~~~-~~~lg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 177 (503)
..+..+|-=+++-+ -...++. .|.-.++.-.+.+...++.-+.....+..+.+..+..+++ .|....
T Consensus 90 ~~fL~A~~LRk~Gk-yT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~g----v~~~vg------- 157 (529)
T COG4147 90 LLFLIAEYLRKLGK-YTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLG----VPYHVG------- 157 (529)
T ss_pred HHHHHHHHHHhcCC-cchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC----CCceee-------
Confidence 44455555554421 1233333 3444455555666666666566667788888888888886 333221
Q ss_pred ccchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC---------CCC-----CCCCCC
Q 010690 178 GIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGW---------SGY-----ELPTGY 243 (503)
Q Consensus 178 ~~~~~~~~~i~~~~~~~i~~~g~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~---------~~~-----~~~~~~ 243 (503)
+.+..+++...+.+.|.|...|.|.+=-.+.+...++..+....+...+.. ... ..+++.
T Consensus 158 ------v~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl 231 (529)
T COG4147 158 ------VVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGL 231 (529)
T ss_pred ------hhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCC
Confidence 245556667788889999999999887777777777766665543211100 000 011122
Q ss_pred CCchhhhHHHHHHHHHHhhhchHHHhhhhhhh-cCC-CCCchhHHHHHHHHHHHHHHHHHHHHH----hcc--cCC----
Q 010690 244 FPFGVNGMLAGSATVFFAFIGFDAVASTAEEV-KNP-QRDLPLGIGTALSICCALYMLVSIVIV----GLV--PYY---- 311 (503)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~-k~P-~k~ip~~~~~~~~~~~v~y~l~~~~~~----~~~--~~~---- 311 (503)
.... .+..+..++--..|.....|.-=.. --| .|+.+++..++.....++|+..-..-. ... |..
T Consensus 232 ~~~~---~i~~isl~~aLm~GTAgLPHil~RFfTvp~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~A~~~v~t~~~~~p~w 308 (529)
T COG4147 232 LYKD---PIDFISLGFALMVGTAGLPHILMRFFTVPDAKEARKSVFWATGFIGIFYILTPIIGAGARLLVGTNPVGKPAW 308 (529)
T ss_pred cccC---HHHHHHHHHHHHHccCCCCeEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcch
Confidence 2222 3333333444455666555543222 122 266778899999999999977644322 111 111
Q ss_pred --------CCCCC-------CchHHHHHHcc-hhHHHHHHHHHHHHHHHHHHHhhhcchhH
Q 010690 312 --------EMDPD-------TPISSAFASHG-MHWASYVITIGAVTALCSTLMGSILPQPR 356 (503)
Q Consensus 312 --------~~~~~-------~p~~~~~~~~~-~~~~~~l~~~~~~~~~~~s~~~~~~~~sr 356 (503)
+.+.+ .....+..... ++|..-++..+.+...+++..+.....+.
T Consensus 309 ~~~w~~~~D~~~~gi~~~~n~a~vlaa~~i~~g~~v~g~vsAga~AtaLstaaGL~l~ias 369 (529)
T COG4147 309 AAKWIKTGDANGDGIGGWTNMAAVLAAPAIGGGPWVLGFVSAGAFATALSTAAGLLLVIAS 369 (529)
T ss_pred hhcccccccccccccccccchHHHhhhHHhcCCceehhHHHHHHHHHHHHHHhhHHHHHHH
Confidence 11111 11111222234 58888888888888888887776655443
No 96
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=96.77 E-value=0.31 Score=49.37 Aligned_cols=306 Identities=12% Similarity=0.054 Sum_probs=135.0
Q ss_pred cccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcCh-H-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHh
Q 010690 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGP-A-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICV 124 (503)
Q Consensus 47 l~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~-~-~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~l 124 (503)
-+|..|+|+-+.+=++..++.+-+...++ +++.|=. + .+..+|++-++..+....-++.++.|.. +.-.-.+-.+
T Consensus 52 ~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s-~l~lGLswwq~~~tv~vG~~~~~~f~~lns~~G~~yhI--sFpv~sR~sF 128 (572)
T KOG2466|consen 52 SRRTWSWWNYIAFWLADSFNVNTWMIAGS-ALELGLSWWQTWITVWVGYLFTAIFLVLNSRPGSDYHI--SFPVLSRSSF 128 (572)
T ss_pred ccccccHHHHHHHHHhccccccceeehhh-HHhccCCHHHHHHHHHHHHHHHHHHHHHccCCCccccc--ceeeeeeeeh
Confidence 56889999998875555555555544444 4454432 2 6666666666555544444444443322 1222223334
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCCchhhhhhhccCCCCccchhHHHHHHHH-HHHHHHhhh
Q 010690 125 GEGVAWLIGWALILEYTIGGSAVARGISPNLAML----FGSADSLPFFMARQQIPGLGIIVDPCAAILVL-IVTGLLCVG 199 (503)
Q Consensus 125 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~i~~~g 199 (503)
|-+.+-.--..-.+.-++.-++++-..++.++.+ ++.....|.+... ++.... ..++..+.. +.....+.+
T Consensus 129 GiygS~~pIi~R~vma~vwYg~~awiGgecV~lmL~si~~~~~hipntl~~---~~~tt~-e~i~FfIFwv~s~~~~~~~ 204 (572)
T KOG2466|consen 129 GIYGSLWPIINRVVMACVWYGVNAWIGGECVQLMLKSIFKSFSHIPNTLGK---PGTTTY-EFIGFFIFWVASLPFYWFP 204 (572)
T ss_pred hhhHhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhhhhcCccccCC---CCCchH-HHHHHHHHHHHhhheeecc
Confidence 4332222222222222333344444445544433 3333333333221 111111 123333333 344455566
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCC-CCCC--CCchhhhHHHHHHHHHHhhhchHHHhhhhhhh-
Q 010690 200 IKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYEL-PTGY--FPFGVNGMLAGSATVFFAFIGFDAVASTAEEV- 275 (503)
Q Consensus 200 ~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~- 275 (503)
...+.++..+-.++.....+.+.+..+... + +..+... +... ....|. ++ ......+.++.....-..|.
T Consensus 205 p~~ir~lf~~ka~~t~fA~~g~LIw~l~kA-h-G~G~l~~~~st~~gs~~aWa-~~---~~i~~~~~~fstl~~N~pDFs 278 (572)
T KOG2466|consen 205 PYKIRHLFTWKAVLTPFAAFGFLIWLLKKA-H-GLGHLFDSKSTVSGSAHAWA-FV---RSIMSCIANFSTLIVNAPDFS 278 (572)
T ss_pred HHHhhhHHHHHHhhhHHHHHHHHHHHHHhc-C-CccccccCCCcccccchhHH-HH---HHHHHHHhccchhhccCchhH
Confidence 666776666655555555555555554422 1 1111111 1111 112232 22 22334455555554444444
Q ss_pred ---cCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccCCCC---CCCCchHHHHHH-------cchhHHHHHHHHHHHHH
Q 010690 276 ---KNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEM---DPDTPISSAFAS-------HGMHWASYVITIGAVTA 342 (503)
Q Consensus 276 ---k~P~k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~---~~~~p~~~~~~~-------~~~~~~~~l~~~~~~~~ 342 (503)
|+|.+ .+-+-+.++.+...+..++.++.... .+.+ +-..|+. ++.+ .+...+..++.++..++
T Consensus 279 RF~ksp~a-~~~~Ql~alp~~~~l~~liGVlv~sa--~~~iYG~~~W~Pld-il~~~l~~~y~~G~RAgvFfi~~~f~la 354 (572)
T KOG2466|consen 279 RFAKSPNA-IWWGQLIALPLPFGLTPLIGVLVTSA--SKIIYGTNYWSPLD-ILNQWLDTNYSAGARAGVFFIGFGFALA 354 (572)
T ss_pred hhcCCCCc-cchhhhhhhhhhhhhhhheeeEehhh--hhhhhcccccCHHH-HHHHHhccccccccchhhhHHHHHHHHH
Confidence 55533 23333332222222111111111100 0111 1223442 3332 24567778888888888
Q ss_pred HHHHHHhhhcchhHHHHHHHhCCCCchhhcc
Q 010690 343 LCSTLMGSILPQPRILMAMARDGLLPPFFSD 373 (503)
Q Consensus 343 ~~~s~~~~~~~~sr~l~~la~d~~lP~~~~~ 373 (503)
.+++.++....++.+ .--+++||++.-
T Consensus 355 ql~~NISan~vaagn----Dl~~L~PkyinI 381 (572)
T KOG2466|consen 355 QLGTNISANSVAAGN----DLSALLPKYINI 381 (572)
T ss_pred HHhcchhccccccch----hhHhhCcceEEe
Confidence 888776654433322 223466766543
No 97
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=96.64 E-value=0.024 Score=54.55 Aligned_cols=235 Identities=10% Similarity=0.054 Sum_probs=135.7
Q ss_pred ccccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhhhhCC-CCCcc-------c
Q 010690 46 KLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCP-SAGSA-------Y 117 (503)
Q Consensus 46 ~l~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~~~~a~~~~el~~~~p-~~Gg~-------~ 117 (503)
+-+.+++.|++..-...++-|.-+...| .++..||.+++.+++.++.++.-++-.+.|- .|. ...|. |
T Consensus 112 e~~~kI~a~qAaWNVTNAIQGMFivgLP--~AvlhGGyw~i~amvg~A~vCcyTGk~Li~C--LYE~~~dGevVrvRdsY 187 (524)
T KOG4303|consen 112 EASEKISALQAAWNVTNAIQGMFIVGLP--IAVLHGGYWSIGAMVGVAYVCCYTGKLLIEC--LYENGEDGEVVRVRDSY 187 (524)
T ss_pred CCCCccHHHHHhhhhhhhhheeeEeccc--eeeeEcchhHHHHHHhhhhhhhccchhhhhh--hccCCCCCcEEEeehhH
Confidence 3446899999998777777664433333 5678899999999988888776666554432 222 22222 2
Q ss_pred cchHHH-hcchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-chhhhhhhccCCCCccchhHHHHHHHHHHHH
Q 010690 118 HYSYIC-VGEGVA-WLIGWALILEYTIGGSAVARGISPNLAMLFGSAD-SLPFFMARQQIPGLGIIVDPCAAILVLIVTG 194 (503)
Q Consensus 118 ~~~~~~-lg~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 194 (503)
.-+.+. .+|.+| ..+...-.......|-.+....++.+..-|.... +-..| . -+.-..++..
T Consensus 188 vaIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~svd~~sW-----------m----~i~~a~LLpc 252 (524)
T KOG4303|consen 188 VAIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLSVDKASW-----------M----MITSASLLPC 252 (524)
T ss_pred HHHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCCccccch-----------h----hhhhHHHhhh
Confidence 222232 566655 5555555666666777777777777776663211 11111 0 1222333344
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCC--CCCCCCCchhhhHHHHHHHHHHhhhchHHHhhhh
Q 010690 195 LLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYE--LPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTA 272 (503)
Q Consensus 195 i~~~g~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 272 (503)
--+...|.++|+..+.+.-.+++-++++...+....+-+|+... ..-.-+|. .+.+..|+|+-.--..++-
T Consensus 253 ~FLk~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPi-------svG~iVFsYTSqIFLP~LE 325 (524)
T KOG4303|consen 253 SFLKDLKIVSRLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPI-------SVGMIVFSYTSQIFLPNLE 325 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCce-------EEEEEEEeeeceeeccccc
Confidence 44567889999999998888888877777665432222232111 01111222 2234457777777778888
Q ss_pred hhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhc
Q 010690 273 EEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGL 307 (503)
Q Consensus 273 ~e~k~P~k~ip~~~~~~~~~~~v~y~l~~~~~~~~ 307 (503)
+.+|||.+ .-.-+-++=+...++=.++..+...+
T Consensus 326 GNM~~ps~-Fn~Ml~WsHIAAaVfK~~Fg~~~fLT 359 (524)
T KOG4303|consen 326 GNMKNPSQ-FNVMLKWSHIAAAVFKVVFGMLGFLT 359 (524)
T ss_pred cccCChhH-heeeeehHHHHHHHHHHHHHHheeee
Confidence 99999953 43444455555555555555444433
No 98
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=96.64 E-value=1 Score=46.36 Aligned_cols=147 Identities=14% Similarity=0.042 Sum_probs=69.9
Q ss_pred hhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccCCC----------CCC---CCchHHHHHHcchhHHHHHHHHHH
Q 010690 273 EEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYE----------MDP---DTPISSAFASHGMHWASYVITIGA 339 (503)
Q Consensus 273 ~e~k~P~k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~----------~~~---~~p~~~~~~~~~~~~~~~l~~~~~ 339 (503)
+.+.+ .|+++--++..++...+.+.+.-.++....-+.+ ... ..-+.+.+++. | ++.++....
T Consensus 287 ARISr-GRTIRe~ilg~~~~psl~~~~wf~ifGg~ai~~~~~g~~~~~~~~~~~~~~~a~~~~l~~l--P-~~~i~~~l~ 362 (453)
T TIGR00842 287 ARISR-GRTIREFIFGVLLGPTAFTYLWFSVFGNSALYLQQNGGFINAPFVVETNGARALFGLLQAL--P-LGTITSALA 362 (453)
T ss_pred eeecC-CcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcchhhhHHHhcccchhHHHHHHHHC--c-HHHHHHHHH
Confidence 44555 4888776766666666665554444332211100 001 11222233333 2 233444444
Q ss_pred HHHHHHHHHhhhcchhHHHHHHHhCCCCchhhccccCCCCCchHHHHHHHHHHHHHHHhhC-H---HHHHHHHHHHHHHH
Q 010690 340 VTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMD-V---SALAGMVSVGTLLA 415 (503)
Q Consensus 340 ~~~~~~s~~~~~~~~sr~l~~la~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~-~---~~l~~i~~~~~li~ 415 (503)
++..+...++..-+++-.+-.++.++.-| +.+++...-..=.+..++++..+.+.+. + +.+..+.++++.+.
T Consensus 363 ~il~~if~vTs~DS~s~vla~~~s~~g~~----~~ep~~~~ri~W~v~ig~~a~~ll~~gG~l~~lQ~~~ii~alP~~~i 438 (453)
T TIGR00842 363 LIVIIIFFITSADSGALVLANTSSRGGQL----GEEPPKWVRVFWAVAIGLIALVLLFSGGSLAALQTTAIIAALPFSLV 438 (453)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHhcCCCC----CCCCCcccchHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 44444444444445555666564432111 1122211111112233455544545443 3 56777888888888
Q ss_pred HHHHHHHHHHHh
Q 010690 416 FTMVAISVLILR 427 (503)
Q Consensus 416 ~~~~~~~~l~~~ 427 (503)
.++.+++.++..
T Consensus 439 ~~l~~~sl~k~l 450 (453)
T TIGR00842 439 MLVVMASLIKDL 450 (453)
T ss_pred HHHHHHHHHHHH
Confidence 888888877554
No 99
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=95.56 E-value=3.6 Score=42.78 Aligned_cols=104 Identities=14% Similarity=0.007 Sum_probs=73.3
Q ss_pred cCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHhcchHHH
Q 010690 51 LTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAW 130 (503)
Q Consensus 51 ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~lg~~~g~ 130 (503)
.+.+-.+..=++++.|+|-+.+|.- +.+.|-+.+.+|.+++.+++-.+-=..+-+.|.-.+.-+.-+-+++-+|+..+.
T Consensus 52 tnk~vlfGhHFaaIAGAGPivGPvl-AAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~G~Si~~ia~~~lG~~a~~ 130 (575)
T COG1966 52 TNKWVLFGHHFASIAGAGPIVGPAL-AAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRHGGKSIGEIAGKYLGRTAKV 130 (575)
T ss_pred CCchhhhHHHHHHHhccCcchhHHH-HHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeeccCCccHHHHHHHHhhhhHHH
Confidence 5556677777899999999998875 445554677888888888887766666665554333346777888889999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010690 131 LIGWALILEYTIGGSAVARGISPNL 155 (503)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~l 155 (503)
++.....+-.....++.+...+..+
T Consensus 131 ~~~~~~l~iliiv~Avfa~vv~~~l 155 (575)
T COG1966 131 FFLLLALILLILVGAVFAAVIAKLL 155 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777766666666665555444443
No 100
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=95.47 E-value=3 Score=41.33 Aligned_cols=103 Identities=15% Similarity=-0.047 Sum_probs=75.8
Q ss_pred cCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHhcchHH
Q 010690 51 LTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVA 129 (503)
Q Consensus 51 ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~-~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~lg~~~g 129 (503)
.+.|-++..=++++.|+|-..+|.. + ..-|+. +.+|.+++++++-.+-=..+-+.|.-.+.-+.-+.+++.+||+.+
T Consensus 52 ~~~~vlfghhf~sIAGaGPI~GPi~-a-a~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~~G~Si~~i~~~~lG~~~~ 129 (376)
T PF02554_consen 52 TNKWVLFGHHFASIAGAGPIVGPIL-A-AQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRHKGKSIGEIAGKYLGKRAK 129 (376)
T ss_pred CchHHhhHHHHHHHhccccchHHHH-H-HHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHHHHH
Confidence 6667788888899999999888865 3 456776 888888888887776655555555433334677888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010690 130 WLIGWALILEYTIGGSAVARGISPNL 155 (503)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l 155 (503)
.++.+..++......++.....++.+
T Consensus 130 ~lf~~f~~~~lilV~avF~~v~a~~~ 155 (376)
T PF02554_consen 130 KLFLIFIFFLLILVIAVFADVVANTF 155 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 98888888777776666655444443
No 101
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=95.38 E-value=0.65 Score=49.78 Aligned_cols=68 Identities=16% Similarity=0.122 Sum_probs=52.1
Q ss_pred CHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccch
Q 010690 52 TIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYS 120 (503)
Q Consensus 52 s~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~-~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~ 120 (503)
+..+.++-+++..+|.|++..-...+.++||.. .+-..+...+.+++.-+.+.-++|.. ..|....|=
T Consensus 39 ~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~~LE~slGQf~-~~g~v~~wr 107 (629)
T KOG3660|consen 39 SKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFFLEMSLGQFT-SQGPVSVWR 107 (629)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHHHHHHHHhhhh-cCChHHHHH
Confidence 677888888899999999997777788999876 44445556777888999999999875 345555553
No 102
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=95.07 E-value=3.9 Score=40.36 Aligned_cols=284 Identities=13% Similarity=0.141 Sum_probs=139.6
Q ss_pred ccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHH-HHHHHhhhhCCC------CCccccch
Q 010690 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSA-FCYAELASRCPS------AGSAYHYS 120 (503)
Q Consensus 48 ~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~~~~a-~~~~el~~~~p~------~Gg~~~~~ 120 (503)
.|+++.+-..+.-.++-+++..|.+-+..+...| ++|++-+.+..+++ +...-+++++.. +=...++.
T Consensus 38 nRsmgg~VlAmt~~aTYisaSSFigGpgaayk~G-----lgwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~nAltI~D~l 112 (473)
T COG4145 38 NRSMGGIVLAMTFTATYISASSFIGGPGAAYKYG-----LGWVLLAMIQVPTVWLALGVLGKKFAILAREYNALTINDLL 112 (473)
T ss_pred cCcccceehhhHHHHHHHHHhhhcCCCcHHHHhc-----hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCeeHHHHH
Confidence 4677776665554444455444333222222222 23444444444433 344555554442 11233333
Q ss_pred H-HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhh
Q 010690 121 Y-ICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVG 199 (503)
Q Consensus 121 ~-~~lg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g 199 (503)
+ |.-++..-++.+....+.+.....++..+.+..++...+. +.... ..+-.+.+.....+.|
T Consensus 113 ~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~gi----dY~tg-------------L~ifa~~V~iYt~fGG 175 (473)
T COG4145 113 FARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALGI----DYTTG-------------LLIFAVSVAIYTAFGG 175 (473)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHCC----Cchhh-------------HHHHHHHHHHHHhhcc
Confidence 3 3346678889999999999999999999999999888762 22110 1112223334455678
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhh--ccc---CCCCCCCCCCCCCchhhh-HHHHHHHHHHhhh-----chHHH
Q 010690 200 IKESTIAQAIVTTANVLAMLFVIIAGSYLG--FKT---GWSGYELPTGYFPFGVNG-MLAGSATVFFAFI-----GFDAV 268 (503)
Q Consensus 200 ~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~--~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----G~~~~ 268 (503)
.|.+..--.+=+.++++..+++.+..++.. .++ ...+.+. .-..|.+... +-..+...+|... |.--.
T Consensus 176 FRAvvltD~IQG~vmligtv~Lf~~~i~~~GG~~~av~tl~~iDp-~lv~P~~~~~~l~~~Fm~Sfwilv~~gvlglP~t 254 (473)
T COG4145 176 FRAVVLTDTIQGLVMLIGTVVLFVGVIYAGGGLSNAVETLTTIDP-GLVTPQGADDILDPPFMASFWILVCFGVLGLPHT 254 (473)
T ss_pred eeeeehHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHhCCc-cccCCCCCcccccchHHHHHHHHHHHHHhcCcHH
Confidence 887765555555556655555554444321 000 0011110 0001111110 1111222233333 32222
Q ss_pred hhhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHH--HH-hcccCCCCCCCCchHHHHHHcchhHHHHHHHHHHHHHHHH
Q 010690 269 ASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIV--IV-GLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCS 345 (503)
Q Consensus 269 ~~~~~e~k~P~k~ip~~~~~~~~~~~v~y~l~~~~--~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~ 345 (503)
+.=-=..|| +|.+.+++.++..+..++-+.+-++ +. .+.|+ -...|.-+....-+..+|...-++..+...+..+
T Consensus 255 ~vr~ia~kD-skaih~gmiigt~vi~il~~gmhl~G~~graViPd-lt~~D~Vip~lalkvlpp~~agifl~apmaAiMS 332 (473)
T COG4145 255 AVRCIAFKD-SKAIHRGMIIGTIVIAILMLGMHLAGALGRAVIPD-LTVVDLVIPTLALKVLPPFAAGIFLAAPMAAIMS 332 (473)
T ss_pred HHHHHhccc-hhHHhcCcchHHHHHHHHHHHHHHhhhhhhhhcCC-CCccchhHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 221222366 5888888888888777664433221 11 12332 1122322333333445566667777777777788
Q ss_pred HHHhhhcchhH
Q 010690 346 TLMGSILPQPR 356 (503)
Q Consensus 346 s~~~~~~~~sr 356 (503)
++.+.+...+.
T Consensus 333 TIds~L~~~ss 343 (473)
T COG4145 333 TINSQLLQSSS 343 (473)
T ss_pred HHHHHHHHHHH
Confidence 87776554443
No 103
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=94.39 E-value=4.7 Score=42.30 Aligned_cols=225 Identities=14% Similarity=0.076 Sum_probs=108.9
Q ss_pred cchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCC------CCchhhhHH
Q 010690 179 IIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGY------FPFGVNGML 252 (503)
Q Consensus 179 ~~~~~~~~i~~~~~~~i~~~g~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 252 (503)
..+-.+++++++.+..+--.|...++ .++.+++++=++.+.+.++++-.++ +.-...-++. ..++..+ +
T Consensus 130 ~~Vv~it~~ILv~LF~iQ~~GT~~ig---~~FgPim~~WF~~l~~~G~~~I~~~-p~Vl~A~nP~yai~f~~~~~~~~-~ 204 (534)
T PF02705_consen 130 PYVVPITIAILVGLFAIQRFGTAKIG---KLFGPIMLLWFLTLGVLGLYNIIQH-PEVLKALNPYYAIRFFIRNGWIG-F 204 (534)
T ss_pred ceehhHHHHHHHHHHHHHhhhhhHHH---HHHhHHHHHHHHHHHHHHHHHHhhC-HHHHHHhCHHHHHHHHHHcCCch-h
Confidence 33334566666777777777766555 5577888777777777777654333 2111110010 0112222 2
Q ss_pred HHHHHHHHhhhchHHHhhhhhhhcCCC-CCchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCchHHHHHHcchhHH
Q 010690 253 AGSATVFFAFIGFDAVASTAEEVKNPQ-RDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWA 331 (503)
Q Consensus 253 ~~~~~~~~~~~G~~~~~~~~~e~k~P~-k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 331 (503)
..+...+.+.+|.|+.-+ |+-|=. |.+.++-..-..-+.++.-+-.-+.+..-|. ....|+- ...++|+
T Consensus 205 ~~LG~V~L~~TGaEALyA---DmGHfg~~~Ir~aw~~~V~PaL~LnY~GQgA~ll~~p~---~~~npFf----~~~P~~~ 274 (534)
T PF02705_consen 205 FVLGAVFLCVTGAEALYA---DMGHFGRKPIRIAWFFLVFPALLLNYFGQGALLLSHPE---AVSNPFF----LLIPEWL 274 (534)
T ss_pred hhcchHHHHHhhHHHHHh---hhccccchhhhhhHHHHHHHHHHHHHccHHHHHHcCcc---hhhhHHH----HHhHHHH
Confidence 234566788899998764 676554 4444444332222222222222222222221 1123333 3334455
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhCCCCch-hhccccCCC-C---CchHHHHHHHHHHHHHHHhhCHHHHHH
Q 010690 332 SYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPP-FFSDVNKTT-Q---VPVKSTIVTGIVAAALAFFMDVSALAG 406 (503)
Q Consensus 332 ~~l~~~~~~~~~~~s~~~~~~~~sr~l~~la~d~~lP~-~~~~~~~~~-~---~P~~a~~~~~~~~~~~~~~~~~~~l~~ 406 (503)
.+.+.+...++..-+..+...++=.+..+.-+-|.+|+ ...+++++. + .|..--++......+...+.+-+.+.+
T Consensus 275 ~~p~~ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYIP~vNw~L~i~~i~vvl~F~~S~~la~ 354 (534)
T PF02705_consen 275 LWPMVILATLATIIASQAVISGAFSLTRQAIQLGYFPRLKIVHTSEKEEGQIYIPEVNWLLMIGVIAVVLGFRSSSNLAA 354 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEECCcccCCcEechHHHHHHHHHHHhhheEECChHHHHH
Confidence 55554444444444444445555556666678899993 122222221 2 454433333333333333456666666
Q ss_pred HHHHHHHHHHHH
Q 010690 407 MVSVGTLLAFTM 418 (503)
Q Consensus 407 i~~~~~li~~~~ 418 (503)
.+.+.......+
T Consensus 355 AYGiAVt~tM~i 366 (534)
T PF02705_consen 355 AYGIAVTGTMLI 366 (534)
T ss_pred HHHHHHHHHHHH
Confidence 665554444443
No 104
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=92.95 E-value=5.5 Score=41.87 Aligned_cols=245 Identities=18% Similarity=0.164 Sum_probs=120.0
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHhhcChH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHhcchHHHH
Q 010690 53 IPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWL 131 (503)
Q Consensus 53 ~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~-~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~lg~~~g~~ 131 (503)
.++...-.++..+..|+.-.-..+-..+||.. .+--.+.--+.+++..+.+..++|.++ .|+.-.|-+.. |.++.+
T Consensus 84 K~eflLa~vgfaV~lgnvWrFpYlC~~nGGgaFlvpY~imli~~GvPLfymELaLGQ~~r-~g~~gvw~ri~--P~l~Gi 160 (629)
T KOG3659|consen 84 KTEFLLAVVGFAVDLGNVWRFPYLCYKNGGGAFLVPYTIMLIVGGVPLFYMELALGQYHR-QGCIGVWRRIA--PALKGI 160 (629)
T ss_pred HHHHHHHHHHHhhcccccceeeheeeeCCCEeEhHHHHHHHHHhccHHHHHHHHHHHHhc-ccchhHHHHhC--HHhcCC
Confidence 35555556677777777777766666677764 444455556678889999999999874 56777775543 322211
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCCCchhhhhhh-------------------------------------
Q 010690 132 IGWALILEYTIGGSAVARGIS---PNLAMLFGSADSLPFFMAR------------------------------------- 171 (503)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~------------------------------------- 171 (503)
||..++-.++....+....+ -++...|..+ .|+---+
T Consensus 161 -gy~i~~i~~~~~~yyn~i~aWA~~yl~~sft~~--lPW~sC~~s~n~~~C~~~~~s~~~~~~~ek~s~a~ef~~r~~l~ 237 (629)
T KOG3659|consen 161 -GYAICLIAFFVGLYYNVIIAWALYYLFTSFTSN--LPWESCPNSWNGPNCFDPTWSKNCDEECEKTSPAQEFWYRKVLG 237 (629)
T ss_pred -chhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CChhhCCCcccCCCccCccccccCchhhhccchhHHHHHhhccc
Confidence 11111111111111111111 1222222211 1111000
Q ss_pred -------ccCCCCccchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh-hhcccCCCCCCCCCCC
Q 010690 172 -------QQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSY-LGFKTGWSGYELPTGY 243 (503)
Q Consensus 172 -------~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~~~~~~~~~~~~~~~l~~~i~~~~-~~~~~~~~~~~~~~~~ 243 (503)
....+..|-..++.+++.+++....+.|.|..+|+..+...+--+++.++.+-++. .+.+++..... .+.+
T Consensus 238 l~~~~~~~d~g~~~~~~~lc~~lv~~liyf~~~kG~kssGKvv~vtallPy~Il~illirgl~l~ga~~g~~y~~-~~~~ 316 (629)
T KOG3659|consen 238 LSESHGLDDLGGPSWTLALCLVLVWLLIYFSLWKGVKSSGKVVWVTALLPYIILLILLVRGLTLPGAKNGIQYYL-TPDI 316 (629)
T ss_pred ccccccccccCCCchHHHHHHHHHHHHHHHHHhccccccceEEeeehhhHHHHHHHHHHhcccccccccchhhee-cccH
Confidence 00111223333466667777888889999999998544443332222222222221 01111111111 1111
Q ss_pred C-CchhhhHHHHHHHHHHhh-hchHHHhhhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 010690 244 F-PFGVNGMLAGSATVFFAF-IGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIV 305 (503)
Q Consensus 244 ~-~~~~~~~~~~~~~~~~~~-~G~~~~~~~~~e~k~P~k~ip~~~~~~~~~~~v~y~l~~~~~~ 305 (503)
. -.....+..+....+++. .|+....+++.-.|- +.|.-|=.+..-.+.++.+++..+++.
T Consensus 317 ~kl~~~~vW~dAAtqiffslg~GfG~L~AfaSyn~F-~NNc~rDAll~S~in~~ts~~sgfviF 379 (629)
T KOG3659|consen 317 EKLKEPSVWIDAATQIFFSLGPGFGVLIAFASYNKF-HNNCYRDALLTSIINCLTSFLSGFVIF 379 (629)
T ss_pred HHHhhHHHHHHHHHHHHhhcCccchhhhhhhhhccc-ccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 0 012234555656666654 688888888776643 455555555555566555555555444
No 105
>PLN00151 potassium transporter; Provisional
Probab=92.62 E-value=9.2 Score=41.99 Aligned_cols=172 Identities=12% Similarity=-0.012 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCC------CCchhhhHHHHHH
Q 010690 183 PCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGY------FPFGVNGMLAGSA 256 (503)
Q Consensus 183 ~~~~i~~~~~~~i~~~g~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 256 (503)
.+++++++.+..+--.|.. |+...+.+++++=++.+..+++++..+.++.-...-++. ..++..+ +..+.
T Consensus 276 ~Is~~ILv~LF~~Q~~GT~---kVg~~FgPImllWFl~i~~iGiynI~~~~p~Vl~AlnP~Y~~~Ff~~~~~~g-w~~LG 351 (852)
T PLN00151 276 MISVAFLVILFSVQRFGTS---KVGFAFGPALALWFCSLGGIGIYNLVKYDSSVFRAFNPVYIYYFFKRNSTKA-WSALG 351 (852)
T ss_pred hHHHHHHHHHHHHHhccch---hhhhhhccHHHHHHHHHHHHHHHHHHhcCHHHHhhhCHHHHHHHHHhCCCce-EEEec
Confidence 3455666666666666655 455667777777777777777765544332221111110 0011111 11233
Q ss_pred HHHHhhhchHHHhhhhhhhcCCC-CCchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCchHHHHHHcchhHHHHHH
Q 010690 257 TVFFAFIGFDAVASTAEEVKNPQ-RDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVI 335 (503)
Q Consensus 257 ~~~~~~~G~~~~~~~~~e~k~P~-k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~ 335 (503)
..+.+.+|.|+.- +|+-|=. |.+.++-...+.=+.++.-+-..+.+..-|. ....|+ ....++|+.+.+
T Consensus 352 gVvLciTGaEALf---ADLGHFg~~sIqiaw~~~V~P~LlL~Y~GQaA~L~~~p~---~~~npF----y~svP~~~~wP~ 421 (852)
T PLN00151 352 GCVLCATGSEAMF---ADLGYFSVRSIQLAFTCLVLPCLLLAYMGQAAYLMKNPD---SAEQIF----FSSVPSSLFWPV 421 (852)
T ss_pred ceeeeeccchhhh---cccCCCCccceeeeehhhHHHHHHHHHcchHHHHhcCcc---cccCcH----HHhCCchhHHHH
Confidence 4567788999754 4555443 4444443332222222222222222222221 112233 233444555544
Q ss_pred HHHHHHHHHHHHHhhhcchhHHHHHHHhCCCCc
Q 010690 336 TIGAVTALCSTLMGSILPQPRILMAMARDGLLP 368 (503)
Q Consensus 336 ~~~~~~~~~~s~~~~~~~~sr~l~~la~d~~lP 368 (503)
.+...++..-...+.+.++=.++.+.-+=|.+|
T Consensus 422 ~vlAtlAaIIASQA~ISgtFSii~Qai~Lg~fP 454 (852)
T PLN00151 422 FLIANLAALIASRAMTTATFSCIKQSMALGCFP 454 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 444444444443444444444555555778999
No 106
>PLN00149 potassium transporter; Provisional
Probab=88.80 E-value=11 Score=41.42 Aligned_cols=175 Identities=13% Similarity=0.108 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCC------CchhhhHHHHHH
Q 010690 183 PCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYF------PFGVNGMLAGSA 256 (503)
Q Consensus 183 ~~~~i~~~~~~~i~~~g~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 256 (503)
.+++++++.+..+--.|.. |+...+.+++++=++.+...++++..+.++.-...-+++. .++..+ +..+.
T Consensus 200 ~is~~ILv~LF~~Q~~GT~---kvg~~FgPIml~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~f~~~~~~~g-~~~LG 275 (779)
T PLN00149 200 PVACIILIGLFALQHYGTH---RVGFLFAPVVLTWLLCISAIGVYNIFHWNPHVYQALSPYYMYKFLKKTQRGG-WMSLG 275 (779)
T ss_pred HHHHHHHHHHHHHhccccH---HHhhhhhhHHHHHHHHHHHHHHHHHHhcCHhHhhhcCHHHHHHHHHHCCCce-eEeec
Confidence 3455666666666666654 5556677888777777777777765444332222111100 011111 22234
Q ss_pred HHHHhhhchHHHhhhhhhhcCCC-CCchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCchHHHHHHcchhHHHHHH
Q 010690 257 TVFFAFIGFDAVASTAEEVKNPQ-RDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVI 335 (503)
Q Consensus 257 ~~~~~~~G~~~~~~~~~e~k~P~-k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~ 335 (503)
..+.+.+|.|+.- +|+-|=. |.+.++-...+.=+.++.-+-..+.+..-|....+-..|+- ...++|+.+.+
T Consensus 276 gV~L~iTG~EALy---ADlGHF~~~~Ir~aw~~~V~P~L~L~Y~GQaA~l~~~p~~~~~~~~pFy----~~iP~~~~~P~ 348 (779)
T PLN00149 276 GILLCITGSEAMF---ADLGHFSQLSIKIAFTSLVYPSLILAYMGQAAYLSKHHVIESDYRIGFY----VSVPEKLRWPV 348 (779)
T ss_pred chhhcccchhhhh---hcccCCCccceeeeehhhHHHHHHHHhhhHHHHHhcCcchhccccCcHH----HhCCchhHHHH
Confidence 4567789999764 4555443 44544443322222232222222233222211112222433 33444555544
Q ss_pred HHHHHHHHHHHHHhhhcchhHHHHHHHhCCCCc
Q 010690 336 TIGAVTALCSTLMGSILPQPRILMAMARDGLLP 368 (503)
Q Consensus 336 ~~~~~~~~~~s~~~~~~~~sr~l~~la~d~~lP 368 (503)
.+...++..-...+.+.++=.++.+.-+=|.+|
T Consensus 349 ~vlAtlAaIIASQA~ISg~FSii~Qa~~Lg~fP 381 (779)
T PLN00149 349 LVIAILAAVVGSQAIITGTFSIIKQCSALGCFP 381 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 444444444433444444444555555778999
No 107
>PLN00148 potassium transporter; Provisional
Probab=88.10 E-value=16 Score=39.99 Aligned_cols=172 Identities=12% Similarity=0.063 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCC------CCchhhhHHHHHH
Q 010690 183 PCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGY------FPFGVNGMLAGSA 256 (503)
Q Consensus 183 ~~~~i~~~~~~~i~~~g~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 256 (503)
.+++++++.+..+--.|.. |+...+.+++++=++.+...++++..+.++.-...-++. ..++..+ +..+.
T Consensus 199 ~is~~ILv~LF~vQ~~GT~---kVg~~FgPIm~lWf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~~~~~~g-~~~LG 274 (785)
T PLN00148 199 LLACVILVGLFALQHCGTH---RVAFMFAPIVIIWLLSIGSIGLYNIIHWNPKIIHALSPYYIIKFFRVTGKDG-WISLG 274 (785)
T ss_pred hHHHHHHHHHHHHhccccH---HHHhhhhhHHHHHHHHHHHHHHHHHHhcCHHHhhhcCHHHHHHHHHhCCCce-EEeec
Confidence 3455566666666666655 455667788877777777777765544433222211110 0111111 12234
Q ss_pred HHHHhhhchHHHhhhhhhhcCCC-CCchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCchHHHHHHcchhHHHHHH
Q 010690 257 TVFFAFIGFDAVASTAEEVKNPQ-RDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVI 335 (503)
Q Consensus 257 ~~~~~~~G~~~~~~~~~e~k~P~-k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~ 335 (503)
..+.+.+|.|+.- +|+-|=. |.+.++-...+.=+.++.-+-..+.+..-| + +...|+- ...++|+.+.+
T Consensus 275 gV~L~iTGaEALy---ADlGHFg~~~Iriaw~~~V~P~L~L~Y~GQaA~ll~~p-~--~~~npFf----~~iP~~~~~P~ 344 (785)
T PLN00148 275 GILLSITGTEAMF---ADLGHFTAASIRLAFATVIYPCLVVQYMGQAAFLSKNI-P--SIPNSFY----DSIPDPVFWPV 344 (785)
T ss_pred chheeccchhhhh---hhccCCCccceEEeeeehHHHHHHHHHcchHHHHhcCc-c--cccCcHH----HhCCchhHHHH
Confidence 4567789999764 4554443 445454433322233332222222222222 1 1123433 33334554544
Q ss_pred HHHHHHHHHHHHHhhhcchhHHHHHHHhCCCCc
Q 010690 336 TIGAVTALCSTLMGSILPQPRILMAMARDGLLP 368 (503)
Q Consensus 336 ~~~~~~~~~~s~~~~~~~~sr~l~~la~d~~lP 368 (503)
.+...++..-...+.+.++=.+..+.-+=|.+|
T Consensus 345 ~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fP 377 (785)
T PLN00148 345 FVIATLAAIVGSQAVITATFSIVKQCHALGCFP 377 (785)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 444444444433444444444555555778999
No 108
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=85.34 E-value=21 Score=38.70 Aligned_cols=172 Identities=16% Similarity=0.135 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCC------CCchhhhHHHHHH
Q 010690 183 PCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGY------FPFGVNGMLAGSA 256 (503)
Q Consensus 183 ~~~~i~~~~~~~i~~~g~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 256 (503)
.+++++++.+..+--.|.. |+...+++++++=++.+.+.++++..+.++.-...-+++ ..++..+ +..+.
T Consensus 170 ~it~~ILv~LF~iQ~~GT~---kvg~~FgPim~vWF~~l~~~Gi~~I~~~~P~Vl~AlnP~ya~~f~~~~~~~~-~~~LG 245 (688)
T TIGR00794 170 PISCIILVLLFLIQRFGTA---KVGFTFAPIILVWLLLLAGIGIYNIVKFNPEVLKALSPYYAVQFFIEYGTVG-WVSLG 245 (688)
T ss_pred hHHHHHHHHHHHHhccccH---HHhhhhhhHHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHHHHHCCCce-eeecc
Confidence 4556666666666666655 455667788877777777777765544222211111110 0111121 12334
Q ss_pred HHHHhhhchHHHhhhhhhhcCCC-CCchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCchHHHHHHcchhHHHHHH
Q 010690 257 TVFFAFIGFDAVASTAEEVKNPQ-RDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVI 335 (503)
Q Consensus 257 ~~~~~~~G~~~~~~~~~e~k~P~-k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~ 335 (503)
..+.+.+|.|+.- +|+-|=. |.+.++-..-+.-+.+++-+-..+.+..-|. ....|+- ...++|+.+.+
T Consensus 246 ~V~L~iTGaEALy---ADmGHFg~~~Ir~aw~~~V~P~L~LnY~GQgA~ll~~p~---~~~NpFf----~~~P~~~~~p~ 315 (688)
T TIGR00794 246 GVVLSITGVEAMF---ADLGHFGKLPIQLAWFTFVYPSLILCYIGQAAYLSKHPE---AIKNPFF----LSIPDWALWPL 315 (688)
T ss_pred chhheeccHhhhh---cccCCCCcccceeehHHHHHHHHHHHHcchHHHHhcCcc---hhcCcHH----HhCchHHHHHH
Confidence 4567889999754 4565543 4444443322222222222222222222221 1123443 33445655555
Q ss_pred HHHHHHHHHHHHHhhhcchhHHHHHHHhCCCCc
Q 010690 336 TIGAVTALCSTLMGSILPQPRILMAMARDGLLP 368 (503)
Q Consensus 336 ~~~~~~~~~~s~~~~~~~~sr~l~~la~d~~lP 368 (503)
.+...++..-+..+.+.++=.+..+.-+-|.+|
T Consensus 316 ~vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~P 348 (688)
T TIGR00794 316 FIIATLAAIIASQAVISGVFSITSQAVRLGCFP 348 (688)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 444444444444444444444555666788999
No 109
>PLN00150 potassium ion transporter family protein; Provisional
Probab=84.38 E-value=14 Score=40.41 Aligned_cols=172 Identities=13% Similarity=0.098 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCC------CCchhhhHHHHHH
Q 010690 183 PCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGY------FPFGVNGMLAGSA 256 (503)
Q Consensus 183 ~~~~i~~~~~~~i~~~g~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 256 (503)
.+++++++.+..+--.|.. |+...+.+++++=++.+...++++..+.++.-...-++. ..++..+ +..+.
T Consensus 216 ~is~~ILv~LF~iQ~~GT~---kVg~~FgPIm~~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~~~~~~g-~~~LG 291 (779)
T PLN00150 216 IISCVILVILFSLQRFGTH---KVSFLFAPIFLCWFFSLALIGCYNIIKWDKSVFLAFNPLYIVSFFIRNGRQG-WESLG 291 (779)
T ss_pred hhHHHHHHHHHHHHhccch---hhhhhhccHHHHHHHHHHHHHHHHHHhcCHHHHhhcCHHHHHHHHHhCCCce-EEEec
Confidence 3455666666666666655 455667788877777777777776544433222111110 0011111 11234
Q ss_pred HHHHhhhchHHHhhhhhhhcCCC-CCchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCchHHHHHHcchhHHHHHH
Q 010690 257 TVFFAFIGFDAVASTAEEVKNPQ-RDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVI 335 (503)
Q Consensus 257 ~~~~~~~G~~~~~~~~~e~k~P~-k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~ 335 (503)
..+.+.+|.|+.- +|+-|=. |.+.++-...+.=+.++.-+-..+.+..-| + +...|+- ...++|+.+.+
T Consensus 292 ~V~L~iTGaEALy---ADlGHFg~~~Iriaw~~~V~P~LlL~Y~GQaA~ll~~p-~--~~~npFf----~~iP~~~~~P~ 361 (779)
T PLN00150 292 GIVLCMTGTEAMF---ADLGHFTVKSMQIAFTSLVYPCLLLTYLGQAAYLVKHM-E--DVNDPFY----RSLPKPIYWPI 361 (779)
T ss_pred ceeeeecchhhhh---ccccCCCccceeeeehhhHHHHHHHHHcchHHHHhcCc-c--cccCcHH----HhCCchhHHHH
Confidence 4567789999754 4555443 445444332222222222222222222222 1 1123433 33444555544
Q ss_pred HHHHHHHHHHHHHhhhcchhHHHHHHHhCCCCc
Q 010690 336 TIGAVTALCSTLMGSILPQPRILMAMARDGLLP 368 (503)
Q Consensus 336 ~~~~~~~~~~s~~~~~~~~sr~l~~la~d~~lP 368 (503)
.+...++..-...+.+.++=.++.+.-+-|.+|
T Consensus 362 ~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fP 394 (779)
T PLN00150 362 FVLATCSAMIASQAMISATFSIVKQAMALGCFP 394 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 444444444444444444444555555778999
No 110
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=78.86 E-value=59 Score=34.90 Aligned_cols=171 Identities=15% Similarity=0.080 Sum_probs=83.0
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCchhhhH--------H
Q 010690 181 VDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGM--------L 252 (503)
Q Consensus 181 ~~~~~~i~~~~~~~i~~~g~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 252 (503)
+-.+++++++.+..+--.|.. ++...+++++++=++.+.+.++++..++ +.-.. +..|.....+ +
T Consensus 143 Vvpit~~ILv~LF~iQ~~GT~---~vG~~FgPIm~vWF~~i~~~Gi~~I~~~-P~Vl~---AlnP~ya~~f~~~~~~~gf 215 (622)
T PRK10745 143 IVPLSIIVLTLLFMIQKHGTG---MVGKLFAPIMLTWFLTLAVLGLRSIIAN-PEVLH---ALNPMWAVHFFLEYKTVSF 215 (622)
T ss_pred cHHHHHHHHHHHHHHhccccH---HHhhhhhhHHHHHHHHHHHHHHHHHhcC-HHHHh---HhCHHHHHHHHHhCCCceE
Confidence 334566666666666666655 4556677888777777777777654432 21111 1112111111 1
Q ss_pred HHHHHHHHhhhchHHHhhhhhhhcCCC-CCchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCchHHHHHHcchhHH
Q 010690 253 AGSATVFFAFIGFDAVASTAEEVKNPQ-RDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWA 331 (503)
Q Consensus 253 ~~~~~~~~~~~G~~~~~~~~~e~k~P~-k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 331 (503)
..+...+.+.+|.|+.- +|+-|=. |.+.++-.....=+.+++-+-.-+.+..-|. ....|+-. ..++|+
T Consensus 216 ~~LG~V~L~vTGaEALY---ADmGHFG~~~Ir~aW~~~v~P~L~LnY~GQgA~ll~~p~---~~~NpFf~----~~P~~~ 285 (622)
T PRK10745 216 FALGAVVLAITGVEALY---ADMGHFGKFPIRLAWFTVVLPSLVLNYFGQGALLLKNPE---AIKNPFFL----LAPDWA 285 (622)
T ss_pred EEecceeeeccchHHHh---hccCCCCccceeeeehhhHHHHHHHHhcchHHHHhcCch---hhcCcHHH----hCChhH
Confidence 12334567788999654 4565543 4455544433332333332333233322221 11334432 233455
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhCCCCc
Q 010690 332 SYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLP 368 (503)
Q Consensus 332 ~~l~~~~~~~~~~~s~~~~~~~~sr~l~~la~d~~lP 368 (503)
.+.+.+...++..-+..+.+.++=.+..+.-+-|.+|
T Consensus 286 ~~p~viLATlAtIIASQAvISGaFSl~~QAi~Lg~~P 322 (622)
T PRK10745 286 LIPLLILATLATVIASQAVISGVFSLTRQAVRLGYLP 322 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCC
Confidence 4544444444433333343444444555555778999
No 111
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=76.15 E-value=9.4 Score=40.48 Aligned_cols=33 Identities=9% Similarity=-0.040 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHH
Q 010690 329 HWASYVITIGAVTALCSTLMGSILPQPRILMAM 361 (503)
Q Consensus 329 ~~~~~l~~~~~~~~~~~s~~~~~~~~sr~l~~l 361 (503)
|.+.-++..+++-+.++|..+.+.+.+-+.+.-
T Consensus 331 pGl~GLfia~vfsA~LSsLSS~~NS~s~v~~eD 363 (585)
T KOG2349|consen 331 PGLRGLFIAVVFSAALSSLSSIFNSLSTVFLED 363 (585)
T ss_pred CCccchhHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 445567778888888888888888777776643
No 112
>PTZ00206 amino acid transporter; Provisional
Probab=71.68 E-value=63 Score=33.75 Aligned_cols=55 Identities=16% Similarity=0.164 Sum_probs=42.6
Q ss_pred CchHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhCCCCchhh
Q 010690 317 TPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFF 371 (503)
Q Consensus 317 ~p~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~sr~l~~la~d~~lP~~~ 371 (503)
....++.+...++++.++..+..++..++++.+++......+..+-+....|+++
T Consensus 121 ~sY~~la~~~~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~ 175 (467)
T PTZ00206 121 RTYEGVARVLLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFL 175 (467)
T ss_pred CCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchh
Confidence 3566777777789999999999999999999999888888877665543344444
No 113
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=60.38 E-value=1.7e+02 Score=28.83 Aligned_cols=72 Identities=17% Similarity=0.073 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCchHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHH
Q 010690 287 GTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAM 361 (503)
Q Consensus 287 ~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~sr~l~~l 361 (503)
..+.+++++++.+....++-... .. + .....+.++...+|+.+.+....+.+..+++++....++...+.++
T Consensus 39 ~~gIivs~vlf~~~g~vim~ig~-~f-~-a~~y~~~~~~v~~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~ 110 (349)
T COG3949 39 ILGIILSTVLFTLSGAVIMTIGK-KF-N-ATSYREILKYVSGPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEM 110 (349)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-Hh-c-ccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 45566677777766666554422 11 1 2234566777778999999999999999999999766666555544
No 114
>COG4146 Predicted symporter [General function prediction only]
Probab=59.55 E-value=2e+02 Score=28.90 Aligned_cols=231 Identities=16% Similarity=0.074 Sum_probs=103.4
Q ss_pred ccccchHHHhcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHH
Q 010690 115 SAYHYSYICVGEGVAWLIGWALILEYTIG-GSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVT 193 (503)
Q Consensus 115 g~~~~~~~~lg~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 193 (503)
-.-++.++-++++.--+++.+...+|... ........+-.++..|+....... .++...+..++++.++ -+.
T Consensus 104 TIPdFlE~RfD~~TR~Iis~lFLi~y~~~flPtvLYsGAla~nsiF~l~~v~~I------S~g~~i~~~viaiG~~-g~~ 176 (571)
T COG4146 104 TIPDFLEERFDKTTRMIISFLFLIAYGVCFLPTVLYSGALALNSIFHLGEVLQI------SHGAAIWLLVIAIGLA-GIL 176 (571)
T ss_pred cchHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHhhhhchHhhhCc------CcchHHHHHHHHHHHH-HHH
Confidence 46678888889888778887777666543 333333444556666653221110 0122222212222222 233
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc----CCCC--------CCC-CCCCCCchhhhHHHHHHHHHH
Q 010690 194 GLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKT----GWSG--------YEL-PTGYFPFGVNGMLAGSATVFF 260 (503)
Q Consensus 194 ~i~~~g~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~----~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~ 260 (503)
...+.|.|..+.--.+=.+..++.-+.+-+.++....+. +... .+. .++..+..|...+.|....-+
T Consensus 177 Yai~GGLkA~AvsDtiNgigLviGgLlvPifaLi~lG~Gsfa~G~~~itt~h~eKlNaIGg~~d~vPw~a~fTGll~vN~ 256 (571)
T COG4146 177 YAIIGGLKAMAVSDTINGIGLVIGGLLVPIFALIALGKGSFAQGIEQITTVHAEKLNAIGGPTDPVPWGAAFTGLLLVNT 256 (571)
T ss_pred HHHHcchhheeeccccchhhHhhhhHHHHHHHHHhhcCccHhhchhhhhccCHHHhcccCCCCCCCcHHHHHHhHhhhhe
Confidence 445577776543222222222222222222222211111 1100 111 111123445556666654432
Q ss_pred hh----hchHHHhhhhhhhcCCCCCchhHHHHHHHHHHHHHH--HHHHHHHhcccCCCCCCCCchHHHHHHcchhHHHHH
Q 010690 261 AF----IGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYM--LVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYV 334 (503)
Q Consensus 261 ~~----~G~~~~~~~~~e~k~P~k~ip~~~~~~~~~~~v~y~--l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l 334 (503)
.| .|.--=+-.+.+.+.-+|-+-.+...-.....++.+ +.++-++.-.| ..+...| ....+.....+.-+
T Consensus 257 FYWcTNQ~IvQRtLaak~LaeGQKG~Llaa~fk~~~pl~LvLPGliafhlygdL~--~aDmaYP--~LVn~VlPv~l~GF 332 (571)
T COG4146 257 FYWCTNQGIVQRTLAAKSLAEGQKGALLAAVFKMLDPLVLVLPGLIAFHLYGDLP--KADMAYP--TLVNNVLPVPLVGF 332 (571)
T ss_pred eeeeccHHHHHHHHhhhhhhccccccHHHHHHHHhchHHhhhhHHHHHHHhccCC--ccccccH--HHHHhccchHHHHH
Confidence 22 444444555666666666554444433333333322 22222222211 1122233 34445544456667
Q ss_pred HHHHHHHHHHHHHHhhhcchhH
Q 010690 335 ITIGAVTALCSTLMGSILPQPR 356 (503)
Q Consensus 335 ~~~~~~~~~~~s~~~~~~~~sr 356 (503)
+...++.+.+++.++.+..++.
T Consensus 333 f~AvLFGAilStFN~fLNSa~T 354 (571)
T COG4146 333 FGAVLFGAILSTFNGFLNSAST 354 (571)
T ss_pred HHHHHHHHHHHHHHHHhhhhhH
Confidence 7777777777777776666554
No 115
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=57.69 E-value=2.1e+02 Score=29.38 Aligned_cols=87 Identities=15% Similarity=0.055 Sum_probs=56.1
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCCC-CchHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhhcch
Q 010690 277 NPQRDLPLGIGTALSICCALYMLVSIVIVGLVPY-YEMDPD-TPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQ 354 (503)
Q Consensus 277 ~P~k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~-~~~~~~-~p~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~ 354 (503)
-|-..-..|.+.+.+...+.+.+..+.......- ...+.+ +.+.+..+++.|+.+.+++.+.+++..+.-+.++....
T Consensus 30 lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~li~~s~~~~~~~~~~aY~~~~ 109 (415)
T COG0814 30 LPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLGKKGGILIGLSYFFALYGLLVAYIVGI 109 (415)
T ss_pred hhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3433333455555555555555544444433221 112223 47888999999999999999999999999999977777
Q ss_pred hHHHHHHHh
Q 010690 355 PRILMAMAR 363 (503)
Q Consensus 355 sr~l~~la~ 363 (503)
...+.+.-.
T Consensus 110 g~~l~~~~~ 118 (415)
T COG0814 110 GNLLASFLG 118 (415)
T ss_pred hhHHHHHHH
Confidence 666666544
No 116
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=56.99 E-value=2.7e+02 Score=29.62 Aligned_cols=73 Identities=15% Similarity=0.290 Sum_probs=38.9
Q ss_pred hhh-cCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCchHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhh
Q 010690 273 EEV-KNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSI 351 (503)
Q Consensus 273 ~e~-k~P~k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~ 351 (503)
+|+ |.|++....+.+.+.+.-.++-.+..+++..... ..+.. .+ .+++.++++..+++.++.+
T Consensus 252 gDVFR~P~~~~lls~lvG~G~Qll~~~~~~~~~a~~g~---~~~~~--------rg-----~l~t~~i~~y~~~~~iaGy 315 (521)
T PF02990_consen 252 GDVFRPPKHPMLLSALVGTGIQLLFMALVTLFFAALGF---LSPNN--------RG-----SLLTAAIILYALTSFIAGY 315 (521)
T ss_pred HHHhcCcCCchHHHhHhcchhhhhHHHHHHHHHHHhhh---ccccC--------cc-----hHHHHHHHHHHHHhhHHHH
Confidence 666 8887767777776666665554444433332211 11110 01 4556666777777766654
Q ss_pred cchhHHHHHHH
Q 010690 352 LPQPRILMAMA 362 (503)
Q Consensus 352 ~~~sr~l~~la 362 (503)
.++|+...+.
T Consensus 316 -~S~~~yk~~~ 325 (521)
T PF02990_consen 316 -VSARLYKSFG 325 (521)
T ss_pred -HHHHHHHHcC
Confidence 3446555553
No 117
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=43.01 E-value=81 Score=28.23 Aligned_cols=13 Identities=15% Similarity=0.404 Sum_probs=10.5
Q ss_pred CchhhccccCCCC
Q 010690 367 LPPFFSDVNKTTQ 379 (503)
Q Consensus 367 lP~~~~~~~~~~~ 379 (503)
+|+++.|.|...+
T Consensus 30 fPD~YtRLHAATK 42 (197)
T PRK12585 30 LPDVYTRTHAAGI 42 (197)
T ss_pred cCcHHHHhhcccc
Confidence 7999999998743
No 118
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=42.43 E-value=4e+02 Score=27.45 Aligned_cols=73 Identities=12% Similarity=0.118 Sum_probs=50.7
Q ss_pred chHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhh
Q 010690 119 YSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCV 198 (503)
Q Consensus 119 ~~~~~lg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~ 198 (503)
..++.+|+.-..+.+.+..+++.-++.......+++++..++. -... .+.++..++...+...
T Consensus 266 i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~k-isY~----------------~~v~i~~i~S~~ian~ 328 (427)
T PF05525_consen 266 IANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPK-ISYK----------------VWVIIFTIFSFIIANL 328 (427)
T ss_pred HHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cChH----------------HHHHHHHHHHHHHHHh
Confidence 4566788888888888888887777777777778888877651 1111 2256667777788888
Q ss_pred hhhhHHHHHH
Q 010690 199 GIKESTIAQA 208 (503)
Q Consensus 199 g~k~~~~~~~ 208 (503)
|+..+.++..
T Consensus 329 Gl~~Ii~~s~ 338 (427)
T PF05525_consen 329 GLDQIIKISV 338 (427)
T ss_pred CHHHHHHHHH
Confidence 8876665543
No 119
>PRK15015 carbon starvation protein A; Provisional
Probab=41.44 E-value=5.1e+02 Score=28.31 Aligned_cols=101 Identities=14% Similarity=-0.043 Sum_probs=66.3
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHhhcChH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHhcchHHHH
Q 010690 53 IPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWL 131 (503)
Q Consensus 53 ~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~-~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~lg~~~g~~ 131 (503)
.+-++..=++++.|.|-+.+|.. +.+ -|.. +.+|.+++.+++-.+-=..+-..|.-.+.-+.-+.+++.+|++.+.+
T Consensus 85 k~VLfGHHFasIAGAGPivGPvl-Aa~-~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~~GrSig~ia~~~iG~~~~~l 162 (701)
T PRK15015 85 KKVLFGHHFAAIAGAGPLVGPVL-AAQ-MGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAGVI 162 (701)
T ss_pred ccchhHHHHHHHhccCccHHHHH-HHH-HcchHHHHHHHHcceeechhhhhhheeeeecCCCccHHHHHHHHhhHHHHHH
Confidence 34455666788999999988875 444 5554 67777777777666544444444442233467778889999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010690 132 IGWALILEYTIGGSAVARGISPNL 155 (503)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~l 155 (503)
+....++......++.+...++.+
T Consensus 163 fli~i~~iliiviAvfalvvv~al 186 (701)
T PRK15015 163 ALVACFMIMVIILAVLAMIVVKAL 186 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777766666666665554444443
No 120
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=41.27 E-value=4.7e+02 Score=27.90 Aligned_cols=50 Identities=14% Similarity=0.129 Sum_probs=33.0
Q ss_pred ccchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010690 178 GIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGF 230 (503)
Q Consensus 178 ~~~~~~~~~i~~~~~~~i~~~g~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 230 (503)
..++-++++++++.+..+.-.|...+ ..++++++++=++.+...++.+..
T Consensus 145 ~~~Vvpitl~IL~~LF~iQ~~GT~~V---g~~FGPVm~lWF~~l~~~Gl~~i~ 194 (627)
T COG3158 145 DPYVVPITLIILVLLFLIQRFGTGRV---GKLFGPVMLLWFLALAVLGLINII 194 (627)
T ss_pred cCccHHHHHHHHHHHHHHhcccchhh---hhhhccHHHHHHHHHHHHHHHHHh
Confidence 34444566666666767776665554 456778888877777777776543
No 121
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=32.99 E-value=5.5e+02 Score=26.24 Aligned_cols=50 Identities=10% Similarity=0.082 Sum_probs=41.1
Q ss_pred CCCchHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhC
Q 010690 315 PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARD 364 (503)
Q Consensus 315 ~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~sr~l~~la~d 364 (503)
.+..+.++.++..|+.+.++..+..++..+..+.++..++..++...-.+
T Consensus 63 ~~~~~~~~a~~~LG~~g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~ 112 (403)
T PRK15132 63 ADTGLGTLAKRYLGRYGQWLTGFSMMFLMYALTAAYISGAGELLASSISD 112 (403)
T ss_pred CCCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 34567888888888988999999999999999999998888887766543
No 122
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=32.81 E-value=1.8e+02 Score=22.53 Aligned_cols=29 Identities=34% Similarity=0.724 Sum_probs=22.5
Q ss_pred ccccccCHHHHHHHHhhhhhhhhHHHHHH
Q 010690 46 KLAKNLTIPHLVAIGVGSTIGAGVYILVG 74 (503)
Q Consensus 46 ~l~r~ls~~~~~~~~i~~~iG~G~~~~~~ 74 (503)
+.--.+|..|..+++.+..++.|.+....
T Consensus 12 ki~~GlT~RQl~~l~~~~~~~~~~~~~~~ 40 (93)
T PF12666_consen 12 KIFFGLTLRQLICLAIGALVGVGVYLLLW 40 (93)
T ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456899999999999888888766553
No 123
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=29.54 E-value=6.1e+02 Score=25.67 Aligned_cols=73 Identities=15% Similarity=0.187 Sum_probs=47.2
Q ss_pred cchHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHh
Q 010690 118 HYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLC 197 (503)
Q Consensus 118 ~~~~~~lg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~ 197 (503)
+.+++.+|+.-+.+.+....+++.-.+.......+++++..+.. .|.. .+.++..+....+..
T Consensus 259 ~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k---~~y~--------------~~v~~~~l~s~~ia~ 321 (378)
T TIGR00796 259 AYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPK---LSYK--------------TWVIVFTLFSFIVAN 321 (378)
T ss_pred HHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCHH--------------HHHHHHHHHHHHHHH
Confidence 46777899988888888888777766666666677777666431 1211 124555566666666
Q ss_pred hhhhhHHHHH
Q 010690 198 VGIKESTIAQ 207 (503)
Q Consensus 198 ~g~k~~~~~~ 207 (503)
.|...+.++.
T Consensus 322 ~Gl~~Ii~~~ 331 (378)
T TIGR00796 322 LGLTQIISIS 331 (378)
T ss_pred hCHHHHHHHH
Confidence 7777666543
No 124
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=28.00 E-value=6.9e+02 Score=25.86 Aligned_cols=73 Identities=12% Similarity=0.133 Sum_probs=49.5
Q ss_pred cchHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHh
Q 010690 118 HYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLC 197 (503)
Q Consensus 118 ~~~~~~lg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~ 197 (503)
.++.+.+|+....+.+...++++.-++.....+.+++++..+. .+.. .+.++..++...+..
T Consensus 269 ~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~----isY~--------------~~v~i~~l~S~~lSn 330 (439)
T PRK15433 269 AYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP----LSYR--------------TLVFILGGFSMVVSN 330 (439)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CcHH--------------HHHHHHHHHHHHHHH
Confidence 3566778888888888888887777776777777777776643 1211 125666777777777
Q ss_pred hhhhhHHHHHH
Q 010690 198 VGIKESTIAQA 208 (503)
Q Consensus 198 ~g~k~~~~~~~ 208 (503)
.|...+.++..
T Consensus 331 ~G~~~II~~s~ 341 (439)
T PRK15433 331 LGLSQLIQISV 341 (439)
T ss_pred hHHHHHHHHHH
Confidence 88776665543
No 125
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=27.22 E-value=4.7e+02 Score=23.71 Aligned_cols=15 Identities=20% Similarity=0.390 Sum_probs=10.1
Q ss_pred ceeecCCCCCCCccc
Q 010690 3 FLVDSQRDGGGDGGY 17 (503)
Q Consensus 3 ~~~~~~~~~~~~~~~ 17 (503)
|++|+|++...+...
T Consensus 37 ~LleaQk~G~tA~~l 51 (206)
T PF06570_consen 37 HLLEAQKKGKTARQL 51 (206)
T ss_pred HHHHHHhCCCcHHHH
Confidence 567777777776644
No 126
>PF13194 DUF4010: Domain of unknown function (DUF4010)
Probab=26.41 E-value=5.1e+02 Score=23.76 Aligned_cols=12 Identities=17% Similarity=0.293 Sum_probs=6.7
Q ss_pred chhHHHHHHHhC
Q 010690 353 PQPRILMAMARD 364 (503)
Q Consensus 353 ~~sr~l~~la~d 364 (503)
...-....++|+
T Consensus 34 SSTA~t~~la~~ 45 (211)
T PF13194_consen 34 SSTATTVSLARR 45 (211)
T ss_pred HHHHHHHHHHHH
Confidence 333355677774
No 127
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=24.86 E-value=7.9e+02 Score=25.44 Aligned_cols=93 Identities=12% Similarity=0.033 Sum_probs=63.9
Q ss_pred CchHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhCCCCchhhccccCCCCCchHHHHHHHHHHHHHH
Q 010690 317 TPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALA 396 (503)
Q Consensus 317 ~p~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~sr~l~~la~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~ 396 (503)
.|..++.++..|+....+......+..++++......++..+.++-+.-.. .+.+.+ +..-+++.+.+...+.
T Consensus 105 ~~Y~dl~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~------~~~~l~-~~~f~iif~~i~~~~s 177 (437)
T KOG1303|consen 105 YRYPDLGQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSL------NDNSLD-KQYFIIIFGLIVLPLS 177 (437)
T ss_pred CChHHHHHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------cccccc-ceehhhhHHHHHHHHH
Confidence 467788777777666778888999999999999999999999988764111 110222 3334556666666777
Q ss_pred HhhCHHHHHHHHHHHHHHHH
Q 010690 397 FFMDVSALAGMVSVGTLLAF 416 (503)
Q Consensus 397 ~~~~~~~l~~i~~~~~li~~ 416 (503)
.+.+++.+.-+...+..++.
T Consensus 178 ~lp~~~~l~~~S~~~avmS~ 197 (437)
T KOG1303|consen 178 QLPNFHSLSYLSLVGAVMST 197 (437)
T ss_pred HCCCcchhHHHHHHHHHHHH
Confidence 78888776666555554443
No 128
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=24.15 E-value=1.6e+02 Score=20.66 Aligned_cols=25 Identities=16% Similarity=0.368 Sum_probs=19.3
Q ss_pred HHHHHHHHhhhchHHHhhhhhhhcC
Q 010690 253 AGSATVFFAFIGFDAVASTAEEVKN 277 (503)
Q Consensus 253 ~~~~~~~~~~~G~~~~~~~~~e~k~ 277 (503)
..+-..+|++.|.-...+.-+|.++
T Consensus 3 ~~~~sVl~af~GVqs~~~~e~Df~~ 27 (56)
T PF11174_consen 3 QVVKSVLWAFFGVQSSKNRERDFAQ 27 (56)
T ss_pred HHHHHHHHHHhCcCcchhHHHHHHc
Confidence 3455678999999988888888764
No 129
>PRK00968 tetrahydromethanopterin S-methyltransferase subunit D; Provisional
Probab=23.65 E-value=1.9e+02 Score=26.35 Aligned_cols=32 Identities=9% Similarity=0.242 Sum_probs=24.1
Q ss_pred hhhhcCCC-CCchhHHHHHHHHHHHHHHHHHHH
Q 010690 272 AEEVKNPQ-RDLPLGIGTALSICCALYMLVSIV 303 (503)
Q Consensus 272 ~~e~k~P~-k~ip~~~~~~~~~~~v~y~l~~~~ 303 (503)
-|-..||+ |..||+...+++.+.++-++....
T Consensus 204 IEGfHDPKFKr~p~~vias~vaS~~~gii~v~~ 236 (240)
T PRK00968 204 IEGFHDPKFKRWPRAVIASFVASLVCGIVAVLM 236 (240)
T ss_pred eecCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 34557888 899999999998887776554443
No 130
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=20.91 E-value=9.7e+02 Score=25.02 Aligned_cols=53 Identities=15% Similarity=0.160 Sum_probs=37.5
Q ss_pred HHHHHHcchhHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhCCCCchhhcc
Q 010690 320 SSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSD 373 (503)
Q Consensus 320 ~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~sr~l~~la~d~~lP~~~~~ 373 (503)
...++...+++..++..++++.+.-+|.+++.|++.-++...-+- .+|+|+.+
T Consensus 307 ~~~L~~~~g~~a~~Ifai~lLasGQSstitgTyaGQ~VmeGFLn~-~l~~W~r~ 359 (503)
T KOG1291|consen 307 GLLLQCYFGPAALYIFAIGLLASGQSSTITGTYAGQFVMEGFLNL-KLPPWLRR 359 (503)
T ss_pred HHHHHHHhccHHHHHHHHHHHHCCCcccceeeeeeeEeecccccc-cchHHHHH
Confidence 345566677899999999999999999999888776666555332 23444444
No 131
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=20.54 E-value=9.7e+02 Score=24.88 Aligned_cols=94 Identities=12% Similarity=0.043 Sum_probs=65.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhCCCCchhhccccCCCCCchHHHHHHHHH-HHHHHHhhCHHHH
Q 010690 326 HGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIV-AAALAFFMDVSAL 404 (503)
Q Consensus 326 ~~~~~~~~l~~~~~~~~~~~s~~~~~~~~sr~l~~la~d~~lP~~~~~~~~~~~~P~~a~~~~~~~-~~~~~~~~~~~~l 404 (503)
..+++...+++..++++.++.|..++.-.++++.++-+. ..+. ..+.+..++...+ ...+..+.+...+
T Consensus 133 ~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~---------~~~~-~~s~~~~i~~~~~~~lll~~Ir~Lk~L 202 (449)
T KOG1304|consen 133 KYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDE---------HSPG-VLSVRLYILIQLPPLLLLNLIRNLKIL 202 (449)
T ss_pred hhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhc---------cCCC-CccHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 345888899999999999999999999999999999762 1222 3444444433333 3345566778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q 010690 405 AGMVSVGTLLAFTMVAISVLILRYV 429 (503)
Q Consensus 405 ~~i~~~~~li~~~~~~~~~l~~~~~ 429 (503)
++...+.+.+.++-+.+.+...-++
T Consensus 203 sp~Sl~Anv~~~~g~~ii~~y~~~~ 227 (449)
T KOG1304|consen 203 SPFSLFANVFILVGLAIIMYYLVQD 227 (449)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888777777666666655554443
Done!