Query 010690
Match_columns 503
No_of_seqs 222 out of 1703
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 12:12:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010690.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010690hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 100.0 3.9E-44 1.3E-48 370.3 35.6 365 46-431 5-380 (445)
2 3gia_A Uncharacterized protein 100.0 2.9E-43 9.8E-48 363.8 35.7 365 47-432 4-371 (444)
3 4djk_A Probable glutamate/gamm 100.0 2.6E-40 9E-45 347.7 36.4 381 44-441 6-408 (511)
4 2jln_A MHP1; hydantoin, transp 99.2 3.2E-08 1.1E-12 102.5 31.1 286 47-361 23-329 (501)
5 2a65_A Leutaa, Na(+):neurotran 98.3 0.00039 1.3E-08 71.3 26.6 295 52-350 10-359 (519)
6 2xq2_A Sodium/glucose cotransp 98.2 0.00022 7.5E-09 75.3 24.8 289 48-358 48-377 (593)
7 3dh4_A Sodium/glucose cotransp 98.2 0.00015 5.1E-09 75.5 22.7 158 48-224 19-177 (530)
8 2wsw_A BCCT family betaine/car 97.4 0.16 5.5E-06 51.4 29.5 169 247-427 316-503 (509)
9 4ain_A Glycine betaine transpo 96.7 0.082 2.8E-06 53.8 18.6 169 247-429 321-506 (539)
10 4b4a_A TATC, SEC-independent p 14.1 6.3E+02 0.022 22.5 8.2 22 352-373 164-186 (249)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=100.00 E-value=3.9e-44 Score=370.33 Aligned_cols=365 Identities=21% Similarity=0.310 Sum_probs=307.9
Q ss_pred ccccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHhc
Q 010690 46 KLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVG 125 (503)
Q Consensus 46 ~l~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~lg 125 (503)
+++|+++.++++++++++++|+|++..++.+ ..+|+.++++|+++++++++.+++++|+++++|++||.|+|.++.+|
T Consensus 5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~--~~~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G 82 (445)
T 3l1l_A 5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANL--ASTGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFG 82 (445)
T ss_dssp --CCCBCHHHHHHHHHHHHCSSHHHHHHHHH--HHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHSC
T ss_pred CCCCcccHHHHHHHHHHhHHhhhHHhhHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHcC
Confidence 3568999999999999999999999998764 34688899999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHHH
Q 010690 126 EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (503)
Q Consensus 126 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~~ 205 (503)
|++|++.+|.+++.+....+.+..+.++++..+++ ... .++....++++++++++.+|+.|+|...|
T Consensus 83 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-------~~~~~~~~~~~~~~~~~~in~~g~~~~~~ 149 (445)
T 3l1l_A 83 PFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFP------ILK-------DPWVLTITCVVVLWIFVLLNIVGPKMITR 149 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCG------GGG-------SHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc------ccc-------ccHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 99999999999999988888887777777654432 110 01223345778888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCc---hhhhHHHHHHHHHHhhhchHHHhhhhhhhcCCCCCc
Q 010690 206 AQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPF---GVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDL 282 (503)
Q Consensus 206 ~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~G~~~~~~~~~e~k~P~k~i 282 (503)
++.+++.++++.++++++.++.....+.+. .++.+. ++.+++.++...+|+|.|+|..+++++|+|||+|++
T Consensus 150 ~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~i 224 (445)
T 3l1l_A 150 VQAVATVLALIPIVGIAVFGWFWFRGETYM-----AAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNV 224 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTCCCCCCC-----CC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChhhcc-----cccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccc
Confidence 999999999888877776655432211111 111122 255688888999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccCCCC-CCCCchHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHH
Q 010690 283 PLGIGTALSICCALYMLVSIVIVGLVPYYEM-DPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAM 361 (503)
Q Consensus 283 p~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~sr~l~~l 361 (503)
||++..+..++.++|++..+.+....|+++. +.+.|+.+++++..++++..++.+.++++.+++.++..+..+|+++++
T Consensus 225 p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~ 304 (445)
T 3l1l_A 225 PIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAA 304 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998887765 456799999999888999999999999999999999999999999999
Q ss_pred HhCCCCchhhccccCCCCCchHHHHHHHHHHHHHHHh-------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 010690 362 ARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFF-------MDVSALAGMVSVGTLLAFTMVAISVLILRYVPP 431 (503)
Q Consensus 362 a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~-------~~~~~l~~i~~~~~li~~~~~~~~~l~~~~~~~ 431 (503)
+|||.+|++|+|.|++ ++|+++++++++++.++.+. ..++.+.++.+...++.|.+.+++++++|+|+|
T Consensus 305 a~dg~lP~~~~~~~~~-~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~ 380 (445)
T 3l1l_A 305 ADDGLFPPIFARVNKA-GTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF 380 (445)
T ss_dssp HHTTSSCGGGGCCCTT-CCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred HhCCCCcHHHHhcCCC-CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 9999999999999976 99999999999987766644 236788999999999999999999999998877
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=100.00 E-value=2.9e-43 Score=363.77 Aligned_cols=365 Identities=21% Similarity=0.345 Sum_probs=317.6
Q ss_pred cccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHhcc
Q 010690 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGE 126 (503)
Q Consensus 47 l~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~lg~ 126 (503)
.+|+++.+++++++++.++|+|++..++. +.+.+|+++++++++++++.++.+++++|+++++|++||.|+|.++.+||
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~-~~~~~G~~~~~~~li~~~~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~G~ 82 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGV-GAKIAGRNLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIGD 82 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHH-HHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHHCS
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHhHHHHhCc
Confidence 56899999999999999999999998887 45778889999999999999999999999999999999999999999999
Q ss_pred hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHHH
Q 010690 127 GV-AWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (503)
Q Consensus 127 ~~-g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~~ 205 (503)
++ +...+|.+++.+....+..+.+.++++...++... .+++...++++++++++.+|+.|+|...|
T Consensus 83 ~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~in~~g~~~~~~ 149 (444)
T 3gia_A 83 NIITGALSILLWMSYVISIALFAKGFAGYFLPLINAPI-------------NTFNIAITEIGIVAFFTALNFFGSKAVGR 149 (444)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-------------CHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-------------chHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 73 55668999999999999999999998887764221 12233345788888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCchhhhHHHHHHHHHHhhhchHHHhhhhhhhcCCCCCchhH
Q 010690 206 AQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLG 285 (503)
Q Consensus 206 ~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~k~P~k~ip~~ 285 (503)
++.+++.++++.++++++.++.....+++ . +.+.+.++.+++.++...+|+|.|+|..+++++|+|||+|++||+
T Consensus 150 ~~~~~~~~~i~~~~~~ii~~~~~~~~~~~---~--~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~a 224 (444)
T 3gia_A 150 AEFFIVLVKLLILGLFIFAGLITIHPSYV---I--PDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRA 224 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCGGGT---S--CCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcChhhc---C--CCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHH
Confidence 99999999999998888877664322222 1 223456677788888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCC--CCCCchHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHh
Q 010690 286 IGTALSICCALYMLVSIVIVGLVPYYEM--DPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMAR 363 (503)
Q Consensus 286 ~~~~~~~~~v~y~l~~~~~~~~~~~~~~--~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~sr~l~~la~ 363 (503)
+..+..++.++|++..+......|+++. ..+.|+.++.+...+++...++.++.+++.+++.++.+++.+|+++++||
T Consensus 225 i~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~ 304 (444)
T 3gia_A 225 IFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAK 304 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988886654 23457777888877889889999999999999999999999999999999
Q ss_pred CCCCchhhccccCCCCCchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 010690 364 DGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPD 432 (503)
Q Consensus 364 d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~i~~~~~li~~~~~~~~~l~~~~~~~~ 432 (503)
||.+|++|+|.|+ +.|.++++++++++.++.+..+++.+.++.+...++.|.+.+++.+++|+++|+
T Consensus 305 dg~lP~~f~~~~~--~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 371 (444)
T 3gia_A 305 DGELPEFFERKVW--FKSTEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVILSHYILIDEVGG 371 (444)
T ss_dssp HSSCCSSCCTTSC--CSCTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCC
T ss_pred CCCCCHHHhCCCC--CCCcHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999885 469999999999999888888999999999999999999999999998887644
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=100.00 E-value=2.6e-40 Score=347.70 Aligned_cols=381 Identities=20% Similarity=0.233 Sum_probs=285.1
Q ss_pred ccccccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHH-HHHHHHHHHhhh--hCCCCCccccch
Q 010690 44 HQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIAS-AFSAFCYAELAS--RCPSAGSAYHYS 120 (503)
Q Consensus 44 ~~~l~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~-~~~a~~~~el~~--~~p~~Gg~~~~~ 120 (503)
+++++|+++.+++++++++.++|... .+. ...+|+..++++++++++. ++.+++++|+++ ++| +||.|+|+
T Consensus 6 ~~~~~r~l~~~~~~~l~~~~~ig~~~--~~~---~~~~G~~~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~GG~y~~~ 79 (511)
T 4djk_A 6 QTGKAKQLTLLGFFAITASMVMAVYE--YPT---FATSGFSLVFFLLLGGILWFIPVGLCAAEMATVDGWE-EGGVFAWV 79 (511)
T ss_dssp ------CCCHHHHHHHTGGGGCCGGG--HHH---HHTTTTHHHHHHHHHHHHTHHHHHHHHHHHHTTSCC----CHHHHH
T ss_pred cCccCccccHHHHHHHHHHHHHhhch--hHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCC-CCChhhhH
Confidence 34578999999999999999987543 222 3568888887777777776 469999999999 999 99999999
Q ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhh
Q 010690 121 YICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGI 200 (503)
Q Consensus 121 ~~~lg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~ 200 (503)
++.+||++|++.+|.+++.+....+......+..+..++. .|.+ +..+|....++++++++++.+|+.|+
T Consensus 80 ~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~p~~------~~~~~~~~~~~~~~~~~~~~in~~g~ 149 (511)
T 4djk_A 80 SNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILK----WPAL------NEDPITKTIAALIILWALALTQFGGT 149 (511)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTT----CGGG------TSCSSHHHHHHHHHHHHHHHHHHTCS
T ss_pred HhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----Cccc------ccCcHHHHHHHHHHHHHHHHHHHhCh
Confidence 9999999999999999999998877777777776654431 1221 22344455668888899999999999
Q ss_pred hhHHHHHHHHHHHHHHH-HHHHHHHHHhhhcccCCCCCC-CCCCCCCch-hhhHHHHHHHHHHhhhchHHHhhhhhhhcC
Q 010690 201 KESTIAQAIVTTANVLA-MLFVIIAGSYLGFKTGWSGYE-LPTGYFPFG-VNGMLAGSATVFFAFIGFDAVASTAEEVKN 277 (503)
Q Consensus 201 k~~~~~~~~~~~~~~~~-~l~~~i~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~G~~~~~~~~~e~k~ 277 (503)
|...+++.+++.++++. ++++++.++.....++..... +..++.|+. ..+.+.++...+|+|.|+|..+++++|+||
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k~ 229 (511)
T 4djk_A 150 KYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSN 229 (511)
T ss_dssp SSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhccC
Confidence 99999999988775443 444444444322111111100 011111211 112334566779999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCchHHHH----HHcc--hhHHHHHHHHHHHHHHHHHHHhhh
Q 010690 278 PQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAF----ASHG--MHWASYVITIGAVTALCSTLMGSI 351 (503)
Q Consensus 278 P~k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~~~~----~~~~--~~~~~~l~~~~~~~~~~~s~~~~~ 351 (503)
|+|++||++..+..++.++|++..+++....|+++.....+..+.+ ...+ .+|+..++.+.++++.+++.++.+
T Consensus 230 P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (511)
T 4djk_A 230 PGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASWI 309 (511)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987765555544433 3334 478889999999999999999999
Q ss_pred cchhHHHHHHHhCCCCchhhccccCCCCCchHHHHHHHHHHH-HHHHhhC--------HHHHHHHHHHHHHHHHHHHHHH
Q 010690 352 LPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAA-ALAFFMD--------VSALAGMVSVGTLLAFTMVAIS 422 (503)
Q Consensus 352 ~~~sr~l~~la~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~-~~~~~~~--------~~~l~~i~~~~~li~~~~~~~~ 422 (503)
+..+|+++++||||.+|++|+|.|++ ++|++++++...+.. .+..+++ ++.+.++.+...++.|.+.+.+
T Consensus 310 ~~~sR~l~a~ardg~lP~~~~~~~~~-~~P~~ai~~~~~~~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~ 388 (511)
T 4djk_A 310 VGPSRGMYVTAQKNLLPAAFAKMNKN-GVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIG 388 (511)
T ss_dssp THHHHHTCHHHHGGGCSSSCCCCCSS-SCCCHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCcccHHHHhcCCC-CCcHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999975 999999998844433 3334444 5788899999999999999999
Q ss_pred HHHHhcCCCC-CcccCCCcc
Q 010690 423 VLILRYVPPD-EVPVPSTLQ 441 (503)
Q Consensus 423 ~l~~~~~~~~-~~~~~~~~~ 441 (503)
++++|+++++ ++|+|.+.+
T Consensus 389 ~~~~r~~~~~~~~~~~~~~~ 408 (511)
T 4djk_A 389 YIVLVLKHPDLKRTFNIPGG 408 (511)
T ss_dssp HHHHHHHCCSCCCSCCCSST
T ss_pred HHHHHHhCCCCCCCeecCCC
Confidence 9988877654 567777643
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=99.17 E-value=3.2e-08 Score=102.47 Aligned_cols=286 Identities=9% Similarity=-0.058 Sum_probs=165.3
Q ss_pred cccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcCh---HHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHH
Q 010690 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGP---ALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYIC 123 (503)
Q Consensus 47 l~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~---~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~ 123 (503)
.+|+.++++.+.+=++..+..+.+..-+.. .. |- .++++.+++.++..+.....+..+.++-. ....+.+..
T Consensus 23 ~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~-~~--GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~Gl--~~~v~~R~~ 97 (501)
T 2jln_A 23 AERSVGPFSLAAIWFAMAIQVAIFIAAGQM-TS--SFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWGI--NFTVAARMP 97 (501)
T ss_dssp GGCCBCHHHHHHHHHHHHCSTHHHHHHHHH-TT--TSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCC--CHHHHTTTT
T ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHHHHH-hc--CcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCC--ChhhhhHhh
Confidence 357789999998888887777766544432 22 33 36666666666666666666677776532 255578888
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchh-hhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhh
Q 010690 124 VGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLP-FFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKE 202 (503)
Q Consensus 124 lg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~ 202 (503)
+|++.+.+.++...+.++...+.+....++.+...++.....+ .+. ..+++.++...+.+.|.|.
T Consensus 98 FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~~~~~v--------------~~~i~~~l~~~~~~~G~~~ 163 (501)
T 2jln_A 98 FGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFTNLPL--------------WIVIFGAIQVVTTFYGITF 163 (501)
T ss_dssp SCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH--------------HHHHHHHHHHHHHTTHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHH--------------HHHHHHHHHHHHHHhCHHH
Confidence 9999999999888888888888888877877776652100011 111 2344566677888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC-CCCCCCCCCchhhhHHHHHHHH-HHhhhchHHHhhhhhhhcCCCC
Q 010690 203 STIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSG-YELPTGYFPFGVNGMLAGSATV-FFAFIGFDAVASTAEEVKNPQR 280 (503)
Q Consensus 203 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~G~~~~~~~~~e~k~P~k 280 (503)
+.+++.+..++.++..+.+.+..+.....+ ... ...++. .. ..+++.++... -+...+....+-++.+.|+| |
T Consensus 164 i~~~~~~~~p~~~i~~i~~~~~~l~~~g~~-~~~~~~~~~~--~~-~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~-~ 238 (501)
T 2jln_A 164 IRWMNVFASPVLLAMGVYMVYLMLDGADVS-LGEVMSMGGE--NP-GMPFSTAIMIFVGGWIAVVVSIHDIVKECKVD-P 238 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-HHHHTTCCCS--SC-CSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCC-T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-chhhhccCCc--cc-hHHHHHHHHHHHHHHHHHHhccCcccccCCCC-c
Confidence 999999999988888777666555432110 010 011111 11 11233322221 11112223344556666765 4
Q ss_pred C------------chhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCchHHHHHHcchhHH-HHHHH-HHHHHHHHHH
Q 010690 281 D------------LPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWA-SYVIT-IGAVTALCST 346 (503)
Q Consensus 281 ~------------ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~l~~-~~~~~~~~~s 346 (503)
+ .-.+...+..+..++..+....+... ....+|...+.....++.+ ..+.. +.++++.+++
T Consensus 239 ~~~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~-----~~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~i~t 313 (501)
T 2jln_A 239 NASREGQTKADARYATAQWLGMVPASIIFGFIGAASMVL-----VGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWST 313 (501)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HSCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTT
T ss_pred cccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccCHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 4 44444445544444433333322221 1223455444332223333 66777 7788888887
Q ss_pred HH-hhhcchhHHHHHH
Q 010690 347 LM-GSILPQPRILMAM 361 (503)
Q Consensus 347 ~~-~~~~~~sr~l~~l 361 (503)
.. ++.|.++-.+..+
T Consensus 314 n~~~n~ys~~~~l~~~ 329 (501)
T 2jln_A 314 NPAANLLSPAYTLCST 329 (501)
T ss_dssp HHHHHTHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHh
Confidence 77 4677776666666
No 5
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=98.27 E-value=0.00039 Score=71.34 Aligned_cols=295 Identities=15% Similarity=0.122 Sum_probs=153.3
Q ss_pred CHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHH-HHHHHHHHHHHHHHHHHhhh----hCCCCCccccchHHHhcc
Q 010690 52 TIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALS-FLIAGIASAFSAFCYAELAS----RCPSAGSAYHYSYICVGE 126 (503)
Q Consensus 52 s~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~-~il~~l~~~~~a~~~~el~~----~~p~~Gg~~~~~~~~lg~ 126 (503)
|..+.++-++|..+|.|++..-...+.++||..-++- .+...+++.+.-+.+.-+++ +.+ .|..-.| ++...+
T Consensus 10 sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r-~~~i~a~-~~l~~~ 87 (519)
T 2a65_A 10 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGH-GTTPAIF-YLLWRN 87 (519)
T ss_dssp CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTC-CSHHHHH-HHHSCS
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccC-CCHHHHH-HHhcCC
Confidence 4456666678999999999999888888888774443 44445557778888888888 553 3334334 233222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCCC------ch--h-------hhhhhc-cCC-------CCccc
Q 010690 127 GVAWLIGWALILEYTIGGSAVARGISPNLA---MLFGSAD------SL--P-------FFMARQ-QIP-------GLGII 180 (503)
Q Consensus 127 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~------~~--~-------~~~~~~-~~~-------~~~~~ 180 (503)
+.....||...+..+.....+....+-.+. ..+.... +. . .+..+. ..+ ...|.
T Consensus 88 ~~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~g~~~~~ 167 (519)
T 2a65_A 88 RFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKPSLF 167 (519)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHHHHHHHHHHHHHHHHTCCSSSSCBCCCCHH
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcccccCcHHHHHHHHHCCCCCcccccCccHH
Confidence 112233444333333222222222222222 1221110 00 0 011110 011 11233
Q ss_pred hhHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----ccCCCCCCCCCCCCCc-hhhhHHH
Q 010690 181 VDPCAAILVLIVTGLLCVGI-KESTIAQAIVTTANVLAMLFVIIAGSYLGF-----KTGWSGYELPTGYFPF-GVNGMLA 253 (503)
Q Consensus 181 ~~~~~~i~~~~~~~i~~~g~-k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~ 253 (503)
.-.+-++..+++..+...|+ |.+.|+..++.++..+.++++.+-++.... .++...+- .+++..- +..-+..
T Consensus 168 ~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~-~Pd~s~L~~~~vw~~ 246 (519)
T 2a65_A 168 AYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLW-TPDFEKLKDPGVWIA 246 (519)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHH-SCCTTSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHh-cCCHHHhCCHHHHHH
Confidence 33445566667778888999 779999999988877777776665554221 00100000 1111111 1233667
Q ss_pred HHHHHHHhh-hchHHHhhhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHH----h---ccc--CCCCCCCCc-----
Q 010690 254 GSATVFFAF-IGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIV----G---LVP--YYEMDPDTP----- 318 (503)
Q Consensus 254 ~~~~~~~~~-~G~~~~~~~~~e~k~P~k~ip~~~~~~~~~~~v~y~l~~~~~~----~---~~~--~~~~~~~~p----- 318 (503)
+...++|+. .|+.....++.-.|+ +.|+++........-+..-++..+++. . ..+ .+..+...|
T Consensus 247 A~gQ~FFSLslG~G~~ity~SY~~~-~~n~~~~a~~v~~~n~~~sllaG~~IF~~lgf~a~g~~~~~~v~~~G~pgL~Fi 325 (519)
T 2a65_A 247 AVGQIFFTLSLGFGAIITYASYVRK-DQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLGFI 325 (519)
T ss_dssp HHHHHHHHHTTTSSHHHHHHTTSCT-TSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHCHHHHHHHHHHCSSHHHHT
T ss_pred HHHHHHHHhHHHHhHHhhhhcccCC-CcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHhcCCCCceeHH
Confidence 777888887 588888888888876 577777666555554444333222221 1 111 000011102
Q ss_pred -hHHHHHHc-chhHHHHHHHHHHHHHHHHHHHhh
Q 010690 319 -ISSAFASH-GMHWASYVITIGAVTALCSTLMGS 350 (503)
Q Consensus 319 -~~~~~~~~-~~~~~~~l~~~~~~~~~~~s~~~~ 350 (503)
+.+++++. .++..+.++-+.+++..++|..+.
T Consensus 326 ~~P~af~~mp~g~~~~~lFF~~l~~agltS~i~~ 359 (519)
T 2a65_A 326 TLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAI 359 (519)
T ss_dssp HHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHH
Confidence 12344444 234455666666666777777763
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=98.24 E-value=0.00022 Score=75.27 Aligned_cols=289 Identities=13% Similarity=0.088 Sum_probs=143.5
Q ss_pred ccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHhcch
Q 010690 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEG 127 (503)
Q Consensus 48 ~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~lg~~ 127 (503)
.|++++|...+...++..++..+.+....+... |....+..+..++...+.++.+...-.+. +.-..++|.++-+|++
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~-G~~~~~~~~~~~~~~~~~~~~~~p~~~r~-~~~T~~e~l~~Rfg~~ 125 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSI-GLAIASYEWMSAITLIIVGKYFLPIFIEK-GIYTIPEFVEKRFNKK 125 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHHT-CGGGGHHHHHHHHHHHHHHHTHHHHHHHT-TCCSHHHHHHHHTCHH
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCcHHHHHHHccCc
Confidence 478999887776667778877777776655543 43322222223333333444444444443 2347889999999988
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHHHH
Q 010690 128 VAWLIGWALILEYTI-GGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIA 206 (503)
Q Consensus 128 ~g~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~~~ 206 (503)
...+.+....+.+.+ ..+.+..+.+..++..++ +|.+.. +.+..++.+......|.|.+.+.
T Consensus 126 ~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G----i~~~~~-------------i~i~~~i~~~Yt~~GGl~av~~T 188 (593)
T 2xq2_A 126 LKTILAVFWISLYIFVNLTSVLYLGGLALETILG----IPLMYS-------------ILGLALFALVYSIYGGLSAVVWT 188 (593)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC----CCHHHH-------------HHHHHHHHHHHHHTTC---CCHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----ccHHHH-------------HHHHHHHHHHHHHhcchHHHHHH
Confidence 877776665544433 345555566667777776 343321 12233334556666888877666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc----------------ccCCCCCCCCCC--CCC-chhhhHHHHHHHHHHhhhchHH
Q 010690 207 QAIVTTANVLAMLFVIIAGSYLGF----------------KTGWSGYELPTG--YFP-FGVNGMLAGSATVFFAFIGFDA 267 (503)
Q Consensus 207 ~~~~~~~~~~~~l~~~i~~~~~~~----------------~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~G~~~ 267 (503)
..+=..++++..+++.+..+.... .+.+.......+ +.. .++..++.+.......+.|.+.
T Consensus 189 D~iQ~iiml~~~l~v~~~~l~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~q 268 (593)
T 2xq2_A 189 DVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQ 268 (593)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHCGGGSCSSCCSSSGGGGTSCTTHHHHSTHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHhhChhhcccccCCCCcccccchHHHHHHHHHHHHHHHhhcCCh
Confidence 665555665555444433322100 011111110010 000 0111111111111122333331
Q ss_pred -HhhhhhhhcCCCCCchhHHHHHHHHHHHHHHHHH---HHHHhc-----------------ccCCCCCCCCchHHHHHHc
Q 010690 268 -VASTAEEVKNPQRDLPLGIGTALSICCALYMLVS---IVIVGL-----------------VPYYEMDPDTPISSAFASH 326 (503)
Q Consensus 268 -~~~~~~e~k~P~k~ip~~~~~~~~~~~v~y~l~~---~~~~~~-----------------~~~~~~~~~~p~~~~~~~~ 326 (503)
...-.=+.||+ |+..|+.+.+.....+..++.. +..... .| +..+++.-+.... +.
T Consensus 269 ~~~qR~laaks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~p-~~~~~d~~~p~l~-~~ 345 (593)
T 2xq2_A 269 YIIQRTLAAKSV-SEAQKGIVFAAFLALIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLP-SAANADKAYPWLT-QF 345 (593)
T ss_dssp SHHHHHHTTSCH-HHHHHHHHHHHHHTTTHHHHHTHHHHHHHHHHTCHHHHHHHC-----CCC-CSTBGGGHHHHHH-HT
T ss_pred HHHHHhheeCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCC-CCCChhhHHHHHH-HH
Confidence 12223345675 7788888877665444333211 111111 11 1112233333344 66
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhcchhHHH
Q 010690 327 GMHWASYVITIGAVTALCSTLMGSILPQPRIL 358 (503)
Q Consensus 327 ~~~~~~~l~~~~~~~~~~~s~~~~~~~~sr~l 358 (503)
.++++.-++.++++.+..+|..+.+...+.++
T Consensus 346 lp~~l~gl~~a~llaA~mST~~s~l~a~st~~ 377 (593)
T 2xq2_A 346 LPVGVKGVVFAALAAAIVSSLASMLNSTATIF 377 (593)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888889888999889998888776666543
No 7
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.23 E-value=0.00015 Score=75.51 Aligned_cols=158 Identities=13% Similarity=0.073 Sum_probs=85.7
Q ss_pred ccccCHHHHHHHHhhhhhhhhHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCccccchHHHhcch
Q 010690 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEG 127 (503)
Q Consensus 48 ~r~ls~~~~~~~~i~~~iG~G~~~~~~~~~~~~~G~~~i~~~il~~l~~~~~a~~~~el~~~~p~~Gg~~~~~~~~lg~~ 127 (503)
.|++++|...+...++.+++..+.+....+... |....+..+.+++...+.++.+...-.+. +.-..++|.++-+|++
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~-G~~~~~~~~~~~~~~~i~~~~~~p~~~~~-~~~T~~e~l~~Rfg~~ 96 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSI-GLAIASYEWMSAITLIIVGKYFLPIFIEK-GIYTIPEFVEKRFNKK 96 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHT-CGGGHHHHHHHHHHHHHHHHHTHHHHHHT-TCCSHHHHHHHHTCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHHHcCcH
Confidence 478999999888788888888777776655443 44322222223333333444444444443 2347889999999998
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCchhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhhhHHHH
Q 010690 128 VAWLIGWALILEYTI-GGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIA 206 (503)
Q Consensus 128 ~g~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~g~k~~~~~ 206 (503)
...+.+....+.+.+ ..+.+..+.+..++..++ +|.+.. +.+..++.+....+.|.|.+.+.
T Consensus 97 ~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~G----i~~~~~-------------i~i~~~i~~~Yt~~GGl~aV~~T 159 (530)
T 3dh4_A 97 LKTILAVFWISLYIFVNLTSVLYLGGLALETILG----IPLMYS-------------ILGLALFALVYSIYGGLSAVVWT 159 (530)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT----CCHHHH-------------HHHHHHHHHHTTC------CCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCHHHH-------------HHHHHHHHHHHHHhcchHHHHHH
Confidence 877777665544433 234444455556666665 344321 11222222344455788877766
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010690 207 QAIVTTANVLAMLFVIIA 224 (503)
Q Consensus 207 ~~~~~~~~~~~~l~~~i~ 224 (503)
..+-.+++++..+++.+.
T Consensus 160 D~iQ~~im~~g~~~v~~~ 177 (530)
T 3dh4_A 160 DVIQVFFLVLGGFMTTYM 177 (530)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666665554444433
No 8
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=97.36 E-value=0.16 Score=51.43 Aligned_cols=169 Identities=11% Similarity=-0.004 Sum_probs=79.8
Q ss_pred hhhhHHHHHHHHHHhhhchHHHhhhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCchH------
Q 010690 247 GVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPIS------ 320 (503)
Q Consensus 247 ~~~~~~~~~~~~~~~~~G~~~~~~~~~e~k~P~k~ip~~~~~~~~~~~v~y~l~~~~~~~~~~~~~~~~~~p~~------ 320 (503)
+|.+-++.++-+.|.--.-- +...-+.+.+ .|+++-=++..++...+.+.+...+.....=+.+.+....+.
T Consensus 316 ~w~~~WTiFYWaWWisWaPf-vG~FIARISr-GRTIREfi~gvl~vPs~~~~~WfsvfGg~ai~~~~~g~~~l~~~~~~~ 393 (509)
T 2wsw_A 316 GFPQAWTVFYWAWWVIYAIQ-MSIFLARISK-GRTVRELCLGMVSGLTAGTWLIWTILGGNTLQLIDQNILNIPQLIDQY 393 (509)
T ss_dssp CHHHHTHHHHHHHHHHTHHH-HHHHHHHTTT-TCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHH
T ss_pred ChhhccHHHHHHHHHHHHHH-HHHHhheecC-CcCHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHhCCccHHHHHhcc
Confidence 35555555544443222222 2333455666 588876666666666666555444433321111111111111
Q ss_pred -------HHHHHcc-hhHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhCCCCchhhccccCCCCCchHHHH--HHHH
Q 010690 321 -------SAFASHG-MHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTI--VTGI 390 (503)
Q Consensus 321 -------~~~~~~~-~~~~~~l~~~~~~~~~~~s~~~~~~~~sr~l~~la~d~~lP~~~~~~~~~~~~P~~a~~--~~~~ 390 (503)
+.+++.. +.....+..+.++++..+|.-+ ++-++-.++.+|.-+ +.+++ .+.+..+ +.++
T Consensus 394 ~~~~alf~~l~~lP~~~i~~~l~iil~~~FfvTSaDS----~s~vi~~~ss~g~~~----~~~p~--~~~rifW~v~~g~ 463 (509)
T 2wsw_A 394 GVPRAIIETWAALPLSTATMWGFFILCFIATVTLINA----CSYTLAMSTCRSMKE----GADPP--LLVRIGWSVLVGI 463 (509)
T ss_dssp CHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHBCCCCT----TCCCC--HHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHCChHHHHHHHHHHHHHHHHHHcccH----HHHHHHHHHcCCCCC----CCCCC--hhHHHHHHHHHHH
Confidence 1222221 1223333333344444444433 444666666543211 12332 3444443 4455
Q ss_pred HHHHHHHhh---CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010690 391 VAAALAFFM---DVSALAGMVSVGTLLAFTMVAISVLILR 427 (503)
Q Consensus 391 ~~~~~~~~~---~~~~l~~i~~~~~li~~~~~~~~~l~~~ 427 (503)
++..+.+.+ ..+..+-+.++++.+..++.+++.++..
T Consensus 464 va~~LL~~ggl~aLQ~~~ii~alPf~~v~l~~~~sl~k~l 503 (509)
T 2wsw_A 464 IGIILLALGGLKPIQTAIIAGGCPLFFVNIMVTLSFIKDA 503 (509)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 554444444 3566777888888888888888777543
No 9
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=96.74 E-value=0.082 Score=53.81 Aligned_cols=169 Identities=9% Similarity=-0.023 Sum_probs=79.2
Q ss_pred hhhhHHHHHHHHHHhhhchHHHhhhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcc-----cCCCC-CCCCchH
Q 010690 247 GVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLV-----PYYEM-DPDTPIS 320 (503)
Q Consensus 247 ~~~~~~~~~~~~~~~~~G~~~~~~~~~e~k~P~k~ip~~~~~~~~~~~v~y~l~~~~~~~~~-----~~~~~-~~~~p~~ 320 (503)
+|.+-++.++-+.|.--+--... .-+.+.+ .|+++--++..++...+.+.+...+..... ...++ ....+-.
T Consensus 321 ~W~~~WTiFYWaWWiswaPfvG~-FIARISr-GRTIREfv~gvl~vPsl~~~~WfsvfGg~ai~~~~~g~~~~~~~~~~~ 398 (539)
T 4ain_A 321 EWLGSWTIFYWAWWISWSPFVGM-FLARISR-GRSIREFILGVLLVPAGVSTVWFSIFGGTAIVFEQNGESIWGDGAAEE 398 (539)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHH-HHHHTTT-TCBHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTSCHHH
T ss_pred chhhcCHHHHHHHHHHHHHHHHH-HhhhccC-CcCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHhccchhhcCCHhh
Confidence 45555555554444322222222 3445655 588877666666666665554444333221 10011 1112222
Q ss_pred ---HHHHHcchhHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhCCCCchhhccccCCCCCchHHHH--HHHHHHHHH
Q 010690 321 ---SAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTI--VTGIVAAAL 395 (503)
Q Consensus 321 ---~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~sr~l~~la~d~~lP~~~~~~~~~~~~P~~a~~--~~~~~~~~~ 395 (503)
..+++. |. +.++....++..+...++..-+++-++-.++.+| +.+++ .+.+..+ +.++++..+
T Consensus 399 alf~~l~~l--P~-~~i~~~l~iili~~FfvTSaDS~s~vl~~~ss~g-------~~~p~--~~~rifWgv~~g~va~~L 466 (539)
T 4ain_A 399 QLFGLLHAL--PG-GQIMGIIAMILLGTFFITSADSASTVMGTMSQHG-------QLEAN--KWVTAAWGVATAAIGLTL 466 (539)
T ss_dssp HHHHHHHTS--TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHTTT-------CSSCC--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC--ch-HHHHHHHHHHHHHHHHHHccchHHHHHHHHHcCC-------CCCCC--cchhhHHHHHHHHHHHHH
Confidence 233333 22 2233333333333333333344444666666432 22332 2344444 334444444
Q ss_pred HHhhC------HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 010690 396 AFFMD------VSALAGMVSVGTLLAFTMVAISVLILRYV 429 (503)
Q Consensus 396 ~~~~~------~~~l~~i~~~~~li~~~~~~~~~l~~~~~ 429 (503)
.+.+. ++..+-+.++++.+..++.+++.++-.++
T Consensus 467 L~~GG~~~L~aLQt~~ii~alPf~~v~llm~~sl~k~l~~ 506 (539)
T 4ain_A 467 LLSGGDNALSNLQNVTIVAATPFLFVVIGLMFALVKDLSN 506 (539)
T ss_dssp TTC-----CHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 43332 35667778888888888888887766543
No 10
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=14.08 E-value=6.3e+02 Score=22.49 Aligned_cols=22 Identities=14% Similarity=0.448 Sum_probs=15.8
Q ss_pred cchhHHHHHHHhCCCCc-hhhcc
Q 010690 352 LPQPRILMAMARDGLLP-PFFSD 373 (503)
Q Consensus 352 ~~~sr~l~~la~d~~lP-~~~~~ 373 (503)
.-.+-.+.-+++-|..+ +.+.|
T Consensus 164 FelPvi~~~L~~~Giv~~~~l~~ 186 (249)
T 4b4a_A 164 FEMPIVLYVLQKAGVITPEQLAS 186 (249)
T ss_dssp TSHHHHHHHHHHTTSSCHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHH
Confidence 45566788889999988 55544
Done!