Query 010692
Match_columns 503
No_of_seqs 507 out of 1480
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 12:15:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010692.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010692hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 1.9E-40 6.6E-45 323.7 24.6 373 59-466 49-432 (451)
2 3o7q_A L-fucose-proton symport 100.0 2.3E-39 7.7E-44 314.8 24.3 344 58-456 46-421 (438)
3 4gc0_A D-xylose-proton symport 100.0 7.4E-37 2.5E-41 301.6 22.2 423 36-488 14-482 (491)
4 2gfp_A EMRD, multidrug resista 100.0 2.4E-36 8.2E-41 287.1 18.9 336 61-453 23-362 (375)
5 4aps_A DI-OR tripeptide H+ sym 100.0 1.3E-34 4.6E-39 285.4 19.3 394 66-465 47-469 (491)
6 2cfq_A Lactose permease; trans 100.0 6.2E-32 2.1E-36 259.9 9.3 351 65-464 35-396 (417)
7 2xut_A Proton/peptide symporte 100.0 1.2E-29 4.2E-34 252.0 18.8 151 64-214 39-200 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.5 3.3E-14 1.1E-18 138.0 10.2 149 65-213 280-434 (451)
9 2cfq_A Lactose permease; trans 99.5 2.9E-14 9.9E-19 136.7 8.6 145 71-215 257-402 (417)
10 4aps_A DI-OR tripeptide H+ sym 99.4 1.7E-12 5.8E-17 127.4 15.0 173 286-465 13-194 (491)
11 3o7q_A L-fucose-proton symport 99.3 1.2E-11 4E-16 119.5 14.2 148 290-444 30-182 (438)
12 2xut_A Proton/peptide symporte 99.3 1.4E-11 4.8E-16 121.9 14.0 172 285-463 11-194 (524)
13 2gfp_A EMRD, multidrug resista 99.2 2.8E-11 9.4E-16 114.3 10.0 162 292-461 6-168 (375)
14 4gc0_A D-xylose-proton symport 99.2 7.4E-11 2.5E-15 115.7 10.9 156 62-218 301-468 (491)
15 2g9p_A Antimicrobial peptide l 57.2 4.3 0.00015 19.2 1.0 14 92-105 2-15 (26)
16 3mkt_A Multi antimicrobial ext 45.5 1.9E+02 0.0064 26.8 23.2 31 146-176 144-174 (460)
17 2dw3_A Intrinsic membrane prot 30.5 1.2E+02 0.004 20.0 5.3 31 190-220 31-61 (77)
18 4dve_A Biotin transporter BIOY 27.9 1.5E+02 0.005 24.1 6.3 25 79-103 99-123 (198)
19 2nrg_A Intrinsic membrane prot 20.9 1.9E+02 0.0066 19.2 4.9 34 190-223 32-65 (82)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=1.9e-40 Score=323.70 Aligned_cols=373 Identities=13% Similarity=0.082 Sum_probs=289.0
Q ss_pred ccccccccccCCCccchhhHHHHHHHHHHHHHhHHHHhhhhcCCchhHHHHHHHHHHHHHHhhh----hhHHHHHHHHHH
Q 010692 59 SWFTPKRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS----SFDFWSIAICRM 134 (503)
Q Consensus 59 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~l~~~r~ 134 (503)
..++.+.+++ .+..+.|++.+++.++..++++++|+++||+|||++++++.++.+++.+++++ ++|++.++++|+
T Consensus 49 ~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 127 (451)
T 1pw4_A 49 LAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLF 127 (451)
T ss_dssp HHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHH
T ss_pred HHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHH
Confidence 3347778999 99999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHhhhhhhhhchhhhhhccCCCCCchhHHHHHHhHHhHHHHHHHHHHHhhcCcch-hHHHHHHHHHHHHHHHHHHHhcc
Q 010692 135 LVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAFVIK 213 (503)
Q Consensus 135 l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~g-wr~~f~~~~~~~~~~~~~~~~~~ 213 (503)
++|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++.+.+..| ||+.|++.+++.++..++.++..
T Consensus 128 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~ 207 (451)
T 1pw4_A 128 LCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMM 207 (451)
T ss_dssp HHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999888888 99999999998888887777777
Q ss_pred ccccCCCCcccccccccccccccCcccCCCCCccccccchhhhhhhhcccchhhhhhhhhchHHHHHHHhhhhhHHHHHH
Q 010692 214 PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVL 293 (503)
Q Consensus 214 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (503)
||.++....++.++.. ++ ++ ++ .+++++++... + ....++++++|.++...+
T Consensus 208 ~~~~~~~~~~~~~~~~------~~-------~~--~~----~~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~~ 259 (451)
T 1pw4_A 208 RDTPQSCGLPPIEEYK------ND-------YP--DD----YNEKAEQELTA-------K--QIFMQYVLPNKLLWYIAI 259 (451)
T ss_dssp CCSSTTTCCCSCTTTC------CC--------------------------CC-------T--HHHHHHTSSCHHHHHHHH
T ss_pred cCCHhhcCCCChhhhc------cc-------cc--cc----chhhhhccccc-------c--cchHHHHHcCHHHHHHHH
Confidence 7654332111111000 00 00 00 00000000000 0 012467788999999888
Q ss_pred HHHHHHHHhhhhhccccchhhhhcccchhhH-HHHHhhhhhhhhchhhhhhhhhcc--cccchhhHHHHHHHHHHHH-HH
Q 010692 294 GYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQM--GATISNAFKLLSAATFLGA-IS 369 (503)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~~~~~~~~~~-~~ 369 (503)
..++.......+..+.|.|+++.++.++... .+.....++.+++.++.+++.||+ ++| +.+.....+.. +.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~-----~~~~~~~~~~~~~~ 334 (451)
T 1pw4_A 260 ANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR-----GATGVFFMTLVTIA 334 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----hhHHHHHHHHHHHH
Confidence 8888888888899999999999888886544 455677788999999999999999 776 55544444433 33
Q ss_pred HHHHHHh--hhHHHHHHHHHHHHHHHhhccchhhHHhhcccCCCCchhHHHHHHHHHhhcccccchhhHHHHHhhhhhHH
Q 010692 370 CLTAFCL--SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWR 447 (503)
Q Consensus 370 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~ 447 (503)
.++.... .+.+......++.+++.+...+....+..+.+|++.|+++.|+.+...+.+|..++|.+.|++.|..| +.
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~ 413 (451)
T 1pw4_A 335 TIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WD 413 (451)
T ss_dssp HHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SH
T ss_pred HHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cH
Confidence 3333222 24555555666666666667777778889999999999999999877776477889999999999877 77
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010692 448 KTTLALTSIFFLAAGIWFV 466 (503)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~ 466 (503)
..+++.+++.+++.++...
T Consensus 414 ~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 414 GGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888877777666655543
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=2.3e-39 Score=314.85 Aligned_cols=344 Identities=17% Similarity=0.213 Sum_probs=275.3
Q ss_pred cccccccccccCCCccchhhHHHHHHHHHHHHHhHHHHhhhhcCCchhHHHHHHHHHHHHHHh---hhhhHHHHHHHHHH
Q 010692 58 PSWFTPKRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC---GSSFDFWSIAICRM 134 (503)
Q Consensus 58 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~r~ 134 (503)
...+|.+.+++|++..+.|++.+++.+++.++++++|+++||+|||++++++.++.+++.+++ +++++++.++++|+
T Consensus 46 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (438)
T 3o7q_A 46 DILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLF 125 (438)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 333477789999999999999999999999999999999999999999999999999999999 88899999999999
Q ss_pred HHHhhhhhhhhchhhhhhccCCCCCchhHHHHHHhHHhHHHHHHHHHHHhhc-Ccch-----------------------
Q 010692 135 LVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG-SHLN----------------------- 190 (503)
Q Consensus 135 l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~-~~~g----------------------- 190 (503)
+.|++.+...+...+++.|++|+++|++++++.+.+.++|.++++.+++.+. +..+
T Consensus 126 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (438)
T 3o7q_A 126 IIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLV 205 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999988 5554
Q ss_pred --hHHHHHHHHHHHHHHHHHHHhcc-ccccCCCCcccccccccccccccCcccCCCCCccccccchhhhhhhhcccchhh
Q 010692 191 --WRYAFWGEAILMLPFAVLAFVIK-PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESR 267 (503)
Q Consensus 191 --wr~~f~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (503)
||+.|++.+++.++..++.++.. ||..++.++++++
T Consensus 206 ~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~----------------------------------------- 244 (438)
T 3o7q_A 206 LSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQ----------------------------------------- 244 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSST-----------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccc-----------------------------------------
Confidence 99999888877766666554432 3321110000000
Q ss_pred hhhhhhchHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhccccch-hhhhcccchhhH-HHHHhhhhhhhhchhhhhhhh
Q 010692 268 FLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKA-GYNIYHMSNADM-MFGGVTIVCGIVGTISGGFIL 345 (503)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~ 345 (503)
++...++++++++|.++...+..++.......+..+.|.| +++.++.++... .+.....++.+++.++.+++.
T Consensus 245 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 319 (438)
T 3o7q_A 245 -----GSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLI 319 (438)
T ss_dssp -----TSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----cchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011456788899999999988888888888888999999 888878886544 555667788999999999999
Q ss_pred hcccccchhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhccchhhHHhhcccCCCCchhHHHHHHHHHh
Q 010692 346 DQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIH 425 (503)
Q Consensus 346 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 425 (503)
||+++| +.+..+.++..+..++....++.+. ....++.+++.+...+....+..+.+|++ ++.+.++.. ...
T Consensus 320 ~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~ 391 (438)
T 3o7q_A 320 SRFAPH-----KVLAAYALIAMALCLISAFAGGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTI 391 (438)
T ss_dssp HHSCHH-----HHHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTT
T ss_pred HHhcch-----HHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHH
Confidence 999988 6666666666555555555444443 33446666777777888888888888876 888888875 555
Q ss_pred hcccccchhhHHHHHhhhhhHHHHHHHHHHH
Q 010692 426 IFGDVPSSPLVGVLQDHVNNWRKTTLALTSI 456 (503)
Q Consensus 426 ~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 456 (503)
+ |..++|.+.|++.|..|++...+.+.+++
T Consensus 392 ~-g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 421 (438)
T 3o7q_A 392 I-GGGIVTPVMGFVSDAAGNIPTAELIPALC 421 (438)
T ss_dssp H-HHHHHHHHHHHHHHHHTSSGGGGHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 5 88889999999999887566677665444
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=7.4e-37 Score=301.60 Aligned_cols=423 Identities=13% Similarity=0.075 Sum_probs=266.3
Q ss_pred CCchhHHHHHHhhhcccCCCCCcccccccccccCC--------CccchhhHHHHHHHHHHHHHhHHHHhhhhcCCchhHH
Q 010692 36 RPPPLAEAEMATRSLSEDSPPTPSWFTPKRGDFKL--------NNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIG 107 (503)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~ 107 (503)
.++.++..++.++|.+..+... +.++++++. +..+.|++.+++.+|..++++++|+++||+|||++++
T Consensus 14 ~~~a~lg~~~~Gyd~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~ 89 (491)
T 4gc0_A 14 TLVATLGGLLFGYDTAVISGTV----ESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLK 89 (491)
T ss_dssp HHHHHHHHHHHHHHHHGGGGTH----HHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 3344555666677665655554 444555532 3456789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh------------------hhhHHHHHHHHHHHHHhhhhhhhhchhhhhhccCCCCCchhHHHHHHh
Q 010692 108 VGLSVWTFATAGCG------------------SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYM 169 (503)
Q Consensus 108 ~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 169 (503)
++.+++.+++++++ +++|+++++++|+++|+|.|...+....+++|+.|+++|++..++.+.
T Consensus 90 ~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~ 169 (491)
T 4gc0_A 90 IAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQF 169 (491)
T ss_dssp HHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhh
Confidence 99999999999998 478999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHhhcC--------cchhHHHHHHHHHHHHHHHHHHHhccccccCCCCcccccccccccccccCcccC
Q 010692 170 CIPTGVALGYVYGGVVGS--------HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEAS 241 (503)
Q Consensus 170 ~~~~G~~~g~~l~~~l~~--------~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (503)
+..+|.++++.++..+.. ..+||+.+.+..+..++..+. .+..||+++....+++.++..+ ..
T Consensus 170 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~peSp~~L~~~~~~~~a~~-----~l--- 240 (491)
T 4gc0_A 170 AIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLML-LYTVPESPRWLMSRGKQEQAEG-----IL--- 240 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHH-GGGSCCCHHHHHHTTCHHHHHH-----HH---
T ss_pred hhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhh-hhcCCCChHHHHHcCchhHHHH-----hH---
Confidence 999999999998877643 246888888887776555444 4455776544222111111000 00
Q ss_pred CCCCccccccchhhhhhhhcccchhhhhhhhhchHHHHHHHhhhhhHHHH-HHHHHHHHHHhhhhhccccchhhhhcccc
Q 010692 242 NLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVN-VLGYIAYNFVIGAYSYWGPKAGYNIYHMS 320 (503)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (503)
++...+...++........ ....+. .......++.+..... ....+......+.+..+.|.+.+.....+
T Consensus 241 -------~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (491)
T 4gc0_A 241 -------RKIMGNTLATQAVQEIKHS-LDHGRK-TGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGAST 311 (491)
T ss_dssp -------HHHHHHHHHHHHHHHHHHH-HHHHHH-HTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCH
T ss_pred -------HHhcCCchhHHHHHHHHHH-HHhhhh-hhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCc
Confidence 0000000000000000000 000000 0111122333333333 33333444455566677777666544333
Q ss_pred hhhHHHHHhhhhhhhhchhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHH-h---hhHHHHHHHHHHHHHHHhhc
Q 010692 321 NADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC-L---SSLYGFLALFTVGELLVFAT 396 (503)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~ 396 (503)
........+..+..+++.++++++.||+||| +.++.......+..+.... . ...+..+...++...+.+..
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (491)
T 4gc0_A 312 DIALLQTIIVGVINLTFTVLAIMTVDKFGRK-----PLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMS 386 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSH-----HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhcCc-----chhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhH
Confidence 3333455666788889999999999999998 5554444433333222211 1 12223333333333344444
Q ss_pred cc-hhhHHhhcccCCCCchhHHHHHHHHHhhcccccchhhHHHHHhhhh-----hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010692 397 QA-PVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN-----NWRKTTLALTSIFFLAAGIWFVGIFL 470 (503)
Q Consensus 397 ~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (503)
.. ....+..|.+|++.|+++.|+.+...++ ++++++.+.+.+.+... .....+++++++.+++.++.. .++
T Consensus 387 ~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~-~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~--~~~ 463 (491)
T 4gc0_A 387 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWL-ANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMW--KFV 463 (491)
T ss_dssp TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHH-HHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--HHC
T ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH--hee
Confidence 44 3456777888889999999999888888 77778888777654321 122345565555554444332 255
Q ss_pred c-ccccccccccccccccc
Q 010692 471 K-SIDKFNEDGENQISLDS 488 (503)
Q Consensus 471 ~-~~~~~~~~~~~~~~~~~ 488 (503)
| +|+|+.||+|+..+++.
T Consensus 464 PETkg~tLeei~~~f~~~~ 482 (491)
T 4gc0_A 464 PETKGKTLEELEALWEPET 482 (491)
T ss_dssp CCCTTCCHHHHGGGTC---
T ss_pred cCCCCCCHHHHHHHhCCCC
Confidence 6 49999999887765543
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=2.4e-36 Score=287.13 Aligned_cols=336 Identities=14% Similarity=0.066 Sum_probs=266.2
Q ss_pred ccccccccCCCccchhhHHHHHHHHHHHHHhHHHHhhhhcCCchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhh
Q 010692 61 FTPKRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE 140 (503)
Q Consensus 61 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~ 140 (503)
+|.+.+++|.++.+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.++.++++|++.+++.|+++|++.
T Consensus 23 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~ 102 (375)
T 2gfp_A 23 IADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGT 102 (375)
T ss_dssp HHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 37778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhchhhhhhccCCCCCchhHHHHHHhHHhHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHhccccccCCC
Q 010692 141 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGF 220 (503)
Q Consensus 141 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~ 220 (503)
+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+..|||+.|++.+++.++..+...+..||+++..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (375)
T 2gfp_A 103 GVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVD 182 (375)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT
T ss_pred HhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCC
Confidence 99999999999999999999999999999999999999999999999899999999998887776665555556533221
Q ss_pred CcccccccccccccccCcccCCCCCccccccchhhhhhhhcccchhhhhhhhhchHHHHHHHhhhhhHHHHHHHHHHHHH
Q 010692 221 APAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNF 300 (503)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (503)
+++ ++. .+++++++++|.++...+..++...
T Consensus 183 ~~~--~~~-----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (375)
T 2gfp_A 183 APR--TRL-----------------------------------------------LTSYKTLFGNSGFNCYLLMLIGGLA 213 (375)
T ss_dssp CCC--CCT-----------------------------------------------TTCSTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc--ccH-----------------------------------------------HHHHHHHhcCcchHHHHHHHHHHHH
Confidence 000 000 0223466788888888888888888
Q ss_pred HhhhhhccccchhhhhcccchhhH-HHHHhhhhhhhhchhhhhhhhhcccccchhhHHHHHHHH-HHHHHHHHHHHH--h
Q 010692 301 VIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT-FLGAISCLTAFC--L 376 (503)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~ 376 (503)
....+..+.|.|+++..+.++... .+.....++.+++.++.+++.||.+++ ....... ............ .
T Consensus 214 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 288 (375)
T 2gfp_A 214 GIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL-----MWQSVICCLLAGLLMWIPDWFGV 288 (375)
T ss_dssp HHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH-----HHHHHHHHHHTSSSSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhcc
Confidence 888899999999998777776444 445666777888888888888887662 2222222 111111111111 2
Q ss_pred hhHHHHHHHHHHHHHHHhhccchhhHHhhcccCCCCchhHHHHHHHHHhhcccccchhhHHHHHhhhhhHHHHHHHH
Q 010692 377 SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLAL 453 (503)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~ 453 (503)
++.+......++.+++.+...+....+..+..| ++|+++.|+.+...+. |..++|.+.|.+.+..+ +...+.+.
T Consensus 289 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~-g~~~~~~~~g~l~~~~~-~~~~~~~~ 362 (375)
T 2gfp_A 289 MNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNI-GSGVLASLSAMLPQTGQ-GSLGLLMT 362 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHH-HHHCCSTTCTHHHHHHH-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHH-HHHHHHHHHHHHhcCCc-ccHHHHHH
Confidence 344555566667777777888888889888887 8999999999988887 88889999999987644 65555543
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=1.3e-34 Score=285.38 Aligned_cols=394 Identities=10% Similarity=-0.013 Sum_probs=257.1
Q ss_pred cccCCCccchhhHHHHHHHHHHHHHhHHHHhhhh-cCCchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhh
Q 010692 66 GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS-HNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFI 144 (503)
Q Consensus 66 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~ 144 (503)
+|+|.+..+.+++.+++.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++|+++|++.+...
T Consensus 47 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 126 (491)
T 4aps_A 47 GDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLK 126 (491)
T ss_dssp TSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcc
Confidence 3499999999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred hchhhhhhccCCCCC--chhHHHHHHhHHhHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHhccccccCCCCc
Q 010692 145 SLAAPFIDDNAPVPQ--KTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAP 222 (503)
Q Consensus 145 ~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~ 222 (503)
+...+++.|++|+++ |+.++++++.+.++|..++|.+++.+.+..|||+.|++.++..++..++.++..|+..++..+
T Consensus 127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (491)
T 4aps_A 127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYL 206 (491)
T ss_dssp HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCS
T ss_pred chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccccccccc
Confidence 999999999999988 777888899999999999999999999988999999998887776666655554443322111
Q ss_pred ccccccccccccccCccc----------------CCCCCccccccchhhhhhhhcccchhhhhhhhhchHHHHHHHhhhh
Q 010692 223 AESGKAQVVASVSEGSEA----------------SNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEK 286 (503)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (503)
+++.+.. .++..+..+. .....+..+.. ...... .............++.........+..
T Consensus 207 ~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (491)
T 4aps_A 207 RPTDPLA-PEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYI-NLLTIV-AIAIPVFYFAWMISSVKVTSTEHLRVV 283 (491)
T ss_dssp CCSCCCS-HHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHH-HHHHHH-HHHHHHHHHHHHC------------CT
T ss_pred CCCCccc-cchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccch-hhhhHH-HHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 1110000 0000000000 00000000000 000000 000000000000000000001111222
Q ss_pred hHHHHHHHHHHHHHHhhhhhccccchhhhhcccch-hhHHHHHhhhhhhhhchhhhhhhhhcccccchhhHHHHHHHHHH
Q 010692 287 VYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSN-ADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFL 365 (503)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 365 (503)
..+...+..+...........++|.|.++..+.+. ..........+..+++.++.+++.||++||+......+..+..+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 33444444555555666667778888887666662 22344455667777888899999999998853322233333333
Q ss_pred HHHHHHHHHHh---------hhHHHHHHHHHHHHHHHhhccchhhHHhhcccCCCCchhHHHHHHHHHhhcccccchhhH
Q 010692 366 GAISCLTAFCL---------SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLV 436 (503)
Q Consensus 366 ~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~ 436 (503)
..+..+..... .+.+......++.+++.+...+....+..+..|++.|+++.|+.+...++ |..++|.+.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~-g~~i~~~~~ 442 (491)
T 4aps_A 364 AGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSV-GSALNAQLV 442 (491)
T ss_dssp HHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHH-HHHHHHHHG
T ss_pred HHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 33333322221 14455556666777777777888889999999999999999999888887 888899998
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 010692 437 GVLQDHVNNWRKTTLALTSIFFLAAGIWF 465 (503)
Q Consensus 437 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 465 (503)
+++.+.. +...+...+++.+++.++.+
T Consensus 443 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 469 (491)
T 4aps_A 443 TLYNAKS--EVAYFSYFGLGSVVLGIVLV 469 (491)
T ss_dssp GGGGGSS--TTHHHHHTHHHHHHHHHHHH
T ss_pred HHHhccc--HHHHHHHHHHHHHHHHHHHH
Confidence 8887642 44566666655555444433
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.97 E-value=6.2e-32 Score=259.87 Aligned_cols=351 Identities=13% Similarity=0.030 Sum_probs=228.0
Q ss_pred ccccCCCccchhhHHHHHHHHHHHHHhHHHHhhhhcCCchhHHHHHHHHHHHH---HHhhhhhHHH-HHHHHHHHHHhhh
Q 010692 65 RGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFAT---AGCGSSFDFW-SIAICRMLVGVGE 140 (503)
Q Consensus 65 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~---~~~~~~~~~~-~l~~~r~l~G~g~ 140 (503)
++++|+++.+.|++.+.+.+++.++++++|+++||+|||++++++..+++++. ....+++... .++..+++.|++.
T Consensus 35 ~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (417)
T 2cfq_A 35 HDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYL 114 (417)
T ss_dssp HTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSST
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67799999999999999999999999999999999999999999888776532 2223333321 2445677777766
Q ss_pred hhhhhchhhhhhccCCC--CCchhHHHHHHhHHhHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHhccccccC
Q 010692 141 ASFISLAAPFIDDNAPV--PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLK 218 (503)
Q Consensus 141 ~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~ 218 (503)
+...+.....+.++.++ ++|+...+.......+|..++|.+++++.+ .+||+.|++.+++.++..+..++..||+++
T Consensus 115 g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 193 (417)
T 2cfq_A 115 GFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAPS 193 (417)
T ss_dssp THHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCCSC
T ss_pred HHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCccccc
Confidence 65555555555555443 346777888888899999999999999876 589999998877654444333322233111
Q ss_pred CCCcccccccccccccccCcccCCCCCccccccchhhhhhhhcccchhhhhhhhhchHHHHHHHhhhhhHHHHHHHHHHH
Q 010692 219 GFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAY 298 (503)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (503)
. .++++. ++ + ++++ ...++.++++++|.++...+..+..
T Consensus 194 ~---~~~~~~----------------~~--~---------~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (417)
T 2cfq_A 194 S---ATVANA----------------VG--A---------NHSA-----------FSLKLALELFRQPKLWFLSLYVIGV 232 (417)
T ss_dssp S---SCSSSS----------------SS--S---------CCCC-----------CCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred c---cccccc----------------cc--c---------cccc-----------ccHHHHHHHhcCCchhhHHHHHHHH
Confidence 0 000000 00 0 0000 0013345677888887766654544
Q ss_pred HHHhhhhhccccchhhhhcccc---hhh-HHHHHhhhhhhhhchhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHH
Q 010692 299 NFVIGAYSYWGPKAGYNIYHMS---NAD-MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF 374 (503)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (503)
...+..+..+.|.|+.+.++.. ... .....+..++.+++.++.+++.||+++| +.+..+..+..+..+...
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----~~l~~~~~~~~~~~~~~~ 307 (417)
T 2cfq_A 233 SCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----NALLLAGTIMSVRIIGSS 307 (417)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH-----HHHHHHHHHHHHHHHHHH
Confidence 4444555556777776654322 111 2333455567788899999999999988 665555544444333333
Q ss_pred HhhhHHHHHHHHHHHHHHHhhccchhhHHhhcccCCCCchhHHHHH-HHHHhhcccccchhhHHHHHhhhhhHHHHHHHH
Q 010692 375 CLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAIS-TVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLAL 453 (503)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~ 453 (503)
..++.+..++..++.+++.....+....+..+..|++.||++.++. +...++ |++++|.+.|++.|..| +...|.+.
T Consensus 308 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~l-g~~~gp~l~G~l~~~~g-~~~~f~~~ 385 (417)
T 2cfq_A 308 FATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQL-AMIFMSVLAGNMYESIG-FQGAYLVL 385 (417)
T ss_dssp TCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHH-HHHHHTHHHHTHHHHSH-HHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhH-HHHHhhhhHHHHHHhcC-cHHHHHHH
Confidence 3334444444444444444444455667888889999999999985 555566 88889999999999776 66777777
Q ss_pred HHHHHHHHHHH
Q 010692 454 TSIFFLAAGIW 464 (503)
Q Consensus 454 ~~~~~~~~~~~ 464 (503)
+++.+++.++.
T Consensus 386 ~~~~l~~~~~~ 396 (417)
T 2cfq_A 386 GLVALGFTLIS 396 (417)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 76655555443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=1.2e-29 Score=252.00 Aligned_cols=151 Identities=14% Similarity=0.112 Sum_probs=137.5
Q ss_pred cccccC------CCccchhhHHHHHHHHHHHHHhHHHHhhhhc-CCchhHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHH
Q 010692 64 KRGDFK------LNNFQDGVLSSAFMVGLLVASPIFASLAKSH-NPFRLIGVGLSVWTFATAGCGSSF-DFWSIAICRML 135 (503)
Q Consensus 64 i~~~~~------~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l 135 (503)
+.+++| .+..+.+++.+++.++..++++++|+++||+ |||+++.++.++.+++.+++++++ +++.++++|++
T Consensus 39 l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 118 (524)
T 2xut_A 39 LMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFL 118 (524)
T ss_dssp HHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 367788 9999999999999999999999999999999 999999999999999999999999 99999999999
Q ss_pred HHhhhhhhhhchhhhhhccCCCCCchhHHHH---HHhHHhHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHhc
Q 010692 136 VGVGEASFISLAAPFIDDNAPVPQKTAWLSM---FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI 212 (503)
Q Consensus 136 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~ 212 (503)
.|++.+...+...+++.|++|+++|+++.+. .+.+.++|.+++|.+++.+.+..|||+.|++.+++.++..++.++.
T Consensus 119 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 198 (524)
T 2xut_A 119 IALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLG 198 (524)
T ss_dssp HHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999876666 9999999999999999999888899999999988876665554443
Q ss_pred cc
Q 010692 213 KP 214 (503)
Q Consensus 213 ~p 214 (503)
.|
T Consensus 199 ~~ 200 (524)
T 2xut_A 199 RK 200 (524)
T ss_dssp SS
T ss_pred cc
Confidence 33
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.51 E-value=3.3e-14 Score=137.99 Aligned_cols=149 Identities=11% Similarity=-0.039 Sum_probs=132.2
Q ss_pred ccccCCCccchhhHHHHHHHHHHHHHhHHHHhhhhc--CCchhHHHHHHHHH-HHHHHhhhh--hHHHHHHHHHHHHHhh
Q 010692 65 RGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH--NPFRLIGVGLSVWT-FATAGCGSS--FDFWSIAICRMLVGVG 139 (503)
Q Consensus 65 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~l~~~~~~~~-~~~~~~~~~--~~~~~l~~~r~l~G~g 139 (503)
++.+|.+..+.+++.+...++..++.++.|++.||+ |||+.+..+..+.. ++.++..+. .+.+.+.+..++.|++
T Consensus 280 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 359 (451)
T 1pw4_A 280 KEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFL 359 (451)
T ss_dssp TTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHH
Confidence 344899999999999999999999999999999999 99999888887776 677776666 4788888888999999
Q ss_pred hhhhhhchhhhhhccCCCCCchhHHHHHHhHHhH-HHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHhcc
Q 010692 140 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT-GVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK 213 (503)
Q Consensus 140 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~ 213 (503)
.+...+....++.|.+|+++|++++++.+....+ |..++|.+.+.+.+..||+..|++.+++.++..++.++..
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 360 IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899999999999999999999999999 9999999999999999999999999988877776666553
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.50 E-value=2.9e-14 Score=136.68 Aligned_cols=145 Identities=8% Similarity=0.010 Sum_probs=125.7
Q ss_pred CccchhhHHHHHHHHHHHHHhHHHHhhhhcCCchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhchhhh
Q 010692 71 NNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPF 150 (503)
Q Consensus 71 s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~ 150 (503)
+..+.+++.++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566888888888999999999999999999999999999988888888888888888888888888877777777899
Q ss_pred hhccCCCCCchhHHHH-HHhHHhHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHhcccc
Q 010692 151 IDDNAPVPQKTAWLSM-FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL 215 (503)
Q Consensus 151 i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~ 215 (503)
+.|.+|++.|+.+.++ ++....+|..++|.+++.+.+..|++..|.+.+++.++..++.++..||
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~ 402 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 9999999999999998 5888899999999999999888899999999988887777766665554
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.42 E-value=1.7e-12 Score=127.43 Aligned_cols=173 Identities=11% Similarity=0.049 Sum_probs=138.2
Q ss_pred hhHHHHHHHHHHHHHHhhhhhccccchhhhh-----cccchhhH-HHHHhhhhhhhhchhhhhhhhhc-ccccchhhHHH
Q 010692 286 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNI-----YHMSNADM-MFGGVTIVCGIVGTISGGFILDQ-MGATISNAFKL 358 (503)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~ 358 (503)
+.++...+..++....++....+++.|+++. ++.+.... .+.+...++..++.++.|+++|| +||| +.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r-----~~ 87 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGAR-----PA 87 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHH-----HH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-----HH
Confidence 4566666667777778888888899999887 88886555 55677888999999999999999 8998 77
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhccchhhHHhhcccCCCC--chhHHHHHHHHHhhcccccchhhH
Q 010692 359 LSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSL--RALSMAISTVSIHIFGDVPSSPLV 436 (503)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~g~~~~~~~~ 436 (503)
+..+.++..+..++....++.+..++..++.+++.+...+....++.+.+|+++ |+.+.++.+...++ |..++|.+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~ 166 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINL-GAFIAPLIV 166 (491)
T ss_dssp HHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHH-HHHHHHHHH
Confidence 777777776666666666777777777888888888888889999999999988 77788888777777 889999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 010692 437 GVLQDHVNNWRKTTLALTSIFFLAAGIWF 465 (503)
Q Consensus 437 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 465 (503)
+++.+..| |+..|++.++..+++.+...
T Consensus 167 ~~l~~~~g-~~~~f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 167 GAAQEAAG-YHVAFSLAAIGMFIGLLVYY 194 (491)
T ss_dssp HHHHHHSC-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhh-HHHHHHHHHHHHHHHHHHHH
Confidence 99998876 88888887666555555443
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.33 E-value=1.2e-11 Score=119.51 Aligned_cols=148 Identities=9% Similarity=0.040 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHhhhhhccccchhhhhcccchhhH-HHHHhhhhhhhhchhhhhhhhhcccccchhhHHHHHHHHHHHHH
Q 010692 290 VNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAI 368 (503)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 368 (503)
...+..+.............|.+. +.++.+..+. .+.+...++..++.++.|++.||+||| +.+..+.++..+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r-----~~l~~~~~~~~~ 103 (438)
T 3o7q_A 30 LLCSLFFLWAVANNLNDILLPQFQ-QAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYK-----AGIITGLFLYAL 103 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcch-----HHHHHHHHHHHH
Confidence 333444445555555666677654 4577776554 556778889999999999999999999 777766666666
Q ss_pred HHHHH---HHhhhHHHHHHHHHHHHHHHhhccchhhHHhhcccCCCCchhHHHHHHHHHhhcccccchhhHHHHH-hhhh
Q 010692 369 SCLTA---FCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQ-DHVN 444 (503)
Q Consensus 369 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~-~~~g 444 (503)
..++. ...++.+.+++..++.+++.+...+....++.+..|+++|+.+.++.+....+ |.+++|.+.+.+. +..+
T Consensus 104 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~~~ 182 (438)
T 3o7q_A 104 GAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSF-GAIIAVVFGQSLILSNVP 182 (438)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHH-HHHHHHHHTTHHHHTSSC
T ss_pred HHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcccc
Confidence 65555 45567788888888888888888889999999999999999999999888887 9999999999988 5444
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.31 E-value=1.4e-11 Score=121.91 Aligned_cols=172 Identities=12% Similarity=0.008 Sum_probs=131.5
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhccccchhhhhcc------cchhhH-HHHHhhhhhhhhchhhhhhhhhcc-cccchhhH
Q 010692 285 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYH------MSNADM-MFGGVTIVCGIVGTISGGFILDQM-GATISNAF 356 (503)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~ 356 (503)
++.++...+..++....++....+++.|+++..+ .++... .+.+...++..++.++.|+++||+ |||
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r----- 85 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKY----- 85 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSH-----
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----
Confidence 3455666666777777777888888988888777 776544 555777888899999999999999 998
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHhhccchhhHHhhcccCCCCchhHHHH---HHHHHhhcccccc
Q 010692 357 KLLSAATFLGAISCLTAFCLS-SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAI---STVSIHIFGDVPS 432 (503)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~g~~~~ 432 (503)
+.+..+.++..+..++....+ +.+.+++..++.+++.+...+....++.+.+|+++|+++.+. .+...++ |.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-g~~~g 164 (524)
T 2xut_A 86 NTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINF-GSFFA 164 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHH-HHHHH
Confidence 676666666666665555556 677777777888888888888999999999999999876666 7766777 88889
Q ss_pred hhhHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 010692 433 SPLVGVLQDHVNNWRKTTLALTSIFFLAAGI 463 (503)
Q Consensus 433 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 463 (503)
|.+.+++.+..| |+..|.+.+++.++..+.
T Consensus 165 ~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~ 194 (524)
T 2xut_A 165 SLSMPLLLKNFG-AAVAFGIPGVLMFVATVF 194 (524)
T ss_dssp HHTSTHHHHTSC-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccc-HHHHHHHHHHHHHHHHHH
Confidence 999999988766 888887776665544433
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.22 E-value=2.8e-11 Score=114.26 Aligned_cols=162 Identities=14% Similarity=0.070 Sum_probs=121.6
Q ss_pred HHHHHHHHHHhhhhhccccchhhhhcccchhhH-HHHHhhhhhhhhchhhhhhhhhcccccchhhHHHHHHHHHHHHHHH
Q 010692 292 VLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC 370 (503)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 370 (503)
.+..++.......+....|.+.++ .+.++... ...+...++..++.++.|+++||+||| +.+..+..+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r-----~~~~~~~~~~~~~~ 79 (375)
T 2gfp_A 6 VLLVAVGQMAQTIYIPAIADMARD-LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRR-----PVILVGMSIFMLAT 79 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCC-----CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----hhHHHHHHHHHHHH
Confidence 333444555555556666766544 67665544 555777888999999999999999998 55555665555555
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHhhccchhhHHhhcccCCCCchhHHHHHHHHHhhcccccchhhHHHHHhhhhhHHHHH
Q 010692 371 LTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTT 450 (503)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~ 450 (503)
+.....++.+..+...++.+.+.+...+....++.+..|+++|+++.++.+..... |..++|.+.+++.+..+ |+..+
T Consensus 80 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~-~~~~~ 157 (375)
T 2gfp_A 80 LVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILV-SPLLAPLIGGLLDTMWN-WRACY 157 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHH-HHHHHHHHHHHSSCHHH-HHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHhcc-HHHHH
Confidence 55555677777777778888888888888889999999999999999999888777 99999999999988766 77777
Q ss_pred HHHHHHHHHHH
Q 010692 451 LALTSIFFLAA 461 (503)
Q Consensus 451 ~~~~~~~~~~~ 461 (503)
.+.++..++..
T Consensus 158 ~~~~~~~~~~~ 168 (375)
T 2gfp_A 158 LFLLVLCAGVT 168 (375)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 76665544433
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.18 E-value=7.4e-11 Score=115.68 Aligned_cols=156 Identities=8% Similarity=-0.019 Sum_probs=118.0
Q ss_pred cccccccCCCccchhhHHHHHHHHHHHHHhHHHHhhhhcCCchhHHHHHHHHHHHHHHhhhhh-----HHHHHHH-HHHH
Q 010692 62 TPKRGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF-----DFWSIAI-CRML 135 (503)
Q Consensus 62 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-----~~~~l~~-~r~l 135 (503)
+.+.++.+.+..+.........+...++.++.+++.||+|||+.++.+....+++.+..+... +...+.. .-+.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 380 (491)
T 4gc0_A 301 PEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYV 380 (491)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 445666777777777777888889999999999999999999999999888888777655431 2222222 2222
Q ss_pred HHhhhhhhhhchhhhhhccCCCCCchhHHHHHHhHHhHHHHHHHHHHHhhcC------cchhHHHHHHHHHHHHHHHHHH
Q 010692 136 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS------HLNWRYAFWGEAILMLPFAVLA 209 (503)
Q Consensus 136 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~------~~gwr~~f~~~~~~~~~~~~~~ 209 (503)
.+.+. ...+....+.+|.+|.+.|++++++......+|..+++.+.+.+.+ ..++.+.|++.++++++..+..
T Consensus 381 ~~~~~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~ 459 (491)
T 4gc0_A 381 AAFAM-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFM 459 (491)
T ss_dssp HHHHT-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHh-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 22222 2446677899999999999999999999999999998888766643 2355678889999999999888
Q ss_pred HhccccccC
Q 010692 210 FVIKPLQLK 218 (503)
Q Consensus 210 ~~~~p~~~~ 218 (503)
++++||+..
T Consensus 460 ~~~~PETkg 468 (491)
T 4gc0_A 460 WKFVPETKG 468 (491)
T ss_dssp HHHCCCCTT
T ss_pred HheecCCCC
Confidence 888998643
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=57.20 E-value=4.3 Score=19.20 Aligned_cols=14 Identities=21% Similarity=0.363 Sum_probs=11.3
Q ss_pred HHHHhhhhcCCchh
Q 010692 92 IFASLAKSHNPFRL 105 (503)
Q Consensus 92 ~~g~l~dr~Grr~~ 105 (503)
+.|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999864
No 16
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=45.50 E-value=1.9e+02 Score=26.76 Aligned_cols=31 Identities=6% Similarity=-0.337 Sum_probs=17.4
Q ss_pred chhhhhhccCCCCCchhHHHHHHhHHhHHHH
Q 010692 146 LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVA 176 (503)
Q Consensus 146 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ 176 (503)
.........+..+++.+...+.+....+-.+
T Consensus 144 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 174 (460)
T 3mkt_A 144 LLFQALRSFTDGMSLTKPAMVIGFIGLLLNI 174 (460)
T ss_dssp HHHHHHTTTTCTTSCCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 3444455566666676666666555544443
No 17
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=30.55 E-value=1.2e+02 Score=19.96 Aligned_cols=31 Identities=16% Similarity=0.272 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccccccCCC
Q 010692 190 NWRYAFWGEAILMLPFAVLAFVIKPLQLKGF 220 (503)
Q Consensus 190 gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~ 220 (503)
||-.++.+...+.++..-.+=.++||..+..
T Consensus 31 g~AAv~f~~~~~~lv~l~~iG~~LPE~Sr~a 61 (77)
T 2dw3_A 31 GWAGGVFFGTLLLIGFFRVVGRMLPIQENQA 61 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTTCSSC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCchhcccC
Confidence 4555555555444444444455668755443
No 18
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=27.86 E-value=1.5e+02 Score=24.06 Aligned_cols=25 Identities=12% Similarity=0.141 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhHHHHhhhhcCCc
Q 010692 79 SSAFMVGLLVASPIFASLAKSHNPF 103 (503)
Q Consensus 79 ~s~~~~~~~~~~~~~g~l~dr~Grr 103 (503)
..-|.+|+.++..+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 3467888888899999999987543
No 19
>2nrg_A Intrinsic membrane protein PUFX; BENT transmembrane helix, photosynthesis,membrane protein; NMR {Rhodobacter sphaeroides}
Probab=20.86 E-value=1.9e+02 Score=19.15 Aligned_cols=34 Identities=15% Similarity=0.257 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccccccCCCCcc
Q 010692 190 NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPA 223 (503)
Q Consensus 190 gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 223 (503)
||-.++.+...+.++..-.+=..+||..+..+.|
T Consensus 32 G~AAv~fl~~~~~lv~l~~iG~~LPE~Sr~aP~P 65 (82)
T 2nrg_A 32 GWAGGVFFGTLLLIGFFRVVGRMLPIQENQAPAP 65 (82)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHSSTTTTTCCSSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCchhcccCCCC
Confidence 4555555555544444444455668755543333
Done!