BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010693
(503 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus
Pfu-1140779- 001
Length = 367
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 88 VIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWP 124
V+I+G GP G LA+Q+S + V V +P P + P
Sbjct: 11 VVIVGNGPGGFELAKQLSQTYEVTVIDKEPVPYYSKP 47
>pdb|2DKH|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, In Complex With The Substrate
pdb|2DKI|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, Under Pressure Of Xenon Gas (12
Atm)
Length = 639
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVD 116
+ DV+I+G GPAGL LA Q+++ ++ C V+
Sbjct: 32 QVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVE 63
>pdb|3ATQ|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
Acidocaldarius
pdb|3ATR|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
Acidocaldarius Co- Crystallized With Its Ligand
Length = 453
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 51/124 (41%), Gaps = 34/124 (27%)
Query: 83 RIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDC 142
++YDV+IIG G AG A Q+ SR +K+ VD P + IG C
Sbjct: 4 ELKYDVLIIGGGFAGSSAAYQL-SRRGLKILLVDSKP--------------WNRIGDKPC 48
Query: 143 LDKTWPMTCVFINDHKTKYLDRPYGRVSRNILKTKLLENCVSNGVKFHK---AKVWHVNH 199
D ++ L PY K + LEN + NG+K + VW VN
Sbjct: 49 GDA--------VSKAHFDKLGMPYP-------KGEELENKI-NGIKLYSPDMQTVWTVNG 92
Query: 200 QEFE 203
+ FE
Sbjct: 93 EGFE 96
>pdb|2GAG|B Chain B, Heteroteterameric Sarcosine: Structure Of A Diflavin
Metaloenzyme At 1.85 A Resolution
Length = 405
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 61 ELTPESVPEFLDFDLPWFHPSDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCV 115
+L PE PEFL W +P + YD II+G G GL A ++ H + V
Sbjct: 3 DLLPEH-PEFL-----WANPEPKKSYDAIIVGGGGHGLATAYFLAKNHGITNVAV 51
>pdb|2GAH|B Chain B, Heterotetrameric Sarcosine: Structure Of A Diflavin
Metaloenzyme At 1.85 A Resolution
Length = 405
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 61 ELTPESVPEFLDFDLPWFHPSDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCV 115
+L PE PEFL W +P + YD II+G G GL A ++ H + V
Sbjct: 3 DLLPEH-PEFL-----WANPEPKKSYDAIIVGGGGHGLATAYFLAKNHGITNVAV 51
>pdb|1RP0|A Chain A, Crystal Structure Of Thi1 Protein From Arabidopsis
Thaliana
pdb|1RP0|B Chain B, Crystal Structure Of Thi1 Protein From Arabidopsis
Thaliana
Length = 284
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 71/171 (41%), Gaps = 31/171 (18%)
Query: 81 SDRIRY---DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDE---- 133
+D I Y DV+++G G AGL A ++S +V+V ++ S P G W+
Sbjct: 32 TDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQ---SVSPGG-GAWLGGQLFS 87
Query: 134 -----------FEDIGLVDCLDKTWPM---TCVFINDHKTKYLDRPYGRVSRNILKTKLL 179
++IG+ T+ + +F + +K L RP ++ + L+
Sbjct: 88 AMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLI 147
Query: 180 -ENCVSNGVKFHKAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSF 229
+ GV + A V +H + C D N ++A ++V + G F
Sbjct: 148 VKGNRVGGVVTNWALVAQNHHTQS-----CMDPNVMEAKIVVSSCGHDGPF 193
>pdb|1KNP|A Chain A, E. Coli L-aspartate Oxidase: Mutant R386l In Complex With
Succinate
pdb|1KNR|A Chain A, L-aspartate Oxidase: R386l Mutant
Length = 540
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 87 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDP 117
DV+IIG+G AGL LA +++ +H V V P
Sbjct: 10 DVLIIGSGAAGLSLALRLADQHQVIVLSKGP 40
>pdb|1CHU|A Chain A, Structure Of L-Aspartate Oxidase: Implications For The
Succinate Dehydrogenase FUMARATE REDUCATSE FAMILY
Length = 540
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 87 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDP 117
DV+IIG+G AGL LA +++ +H V V P
Sbjct: 10 DVLIIGSGAAGLSLALRLADQHQVIVLSKGP 40
>pdb|4B1B|A Chain A, Crystal Structure Of Plasmodium Falciparum Oxidised
Thioredoxin Reductase At 2.9 Angstrom
pdb|4B1B|B Chain B, Crystal Structure Of Plasmodium Falciparum Oxidised
Thioredoxin Reductase At 2.9 Angstrom
Length = 542
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 18/97 (18%)
Query: 38 ACSRKADHHHHHRIRTSKFGNFL-----ELTPESVPEFLDFDLPWFHPSDRIRYDVIIIG 92
+C K + ++ + ++ +L ELT V E H D YD ++IG
Sbjct: 2 SCKDKNEKKNYEHVNANEKNGYLASEKNELTKNKVEE---------HTYD---YDYVVIG 49
Query: 93 TGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGV 129
GP G+ A++ ++ H +V D S+ +G+
Sbjct: 50 GGPGGMASAKEAAA-HGARVLLFDYVKPSSQGTKWGI 85
>pdb|2GMH|A Chain A, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase In Complexed With Ubiquinone
pdb|2GMH|B Chain B, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase In Complexed With Ubiquinone
pdb|2GMJ|A Chain A, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase
pdb|2GMJ|B Chain B, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase
Length = 584
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 25/35 (71%), Gaps = 5/35 (14%)
Query: 87 DVIIIGTGPAGLRLA---EQVSSRHS--VKVCCVD 116
DV+I+G GPAGL A +Q++++H ++VC V+
Sbjct: 37 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVE 71
>pdb|1URG|A Chain A, X-Ray Structures From The Maltose-Maltodextrin Binding
Protein Of The Thermoacidophilic Bacterium
Alicyclobacillus Acidocaldarius
pdb|1URS|A Chain A, X-Ray Structures Of The Maltose-Maltodextrin Binding
Protein Of The Thermoacidophilic Bacterium
Alicyclobacillus Acidocaldarius
pdb|1URS|B Chain B, X-Ray Structures Of The Maltose-Maltodextrin Binding
Protein Of The Thermoacidophilic Bacterium
Alicyclobacillus Acidocaldarius
Length = 402
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 258 DKMVLMDWRDSHLGNEPYLRASNL-KLPTFLYAMPFDSNLVFLEETSLVSRP 308
DK++++D + G + Y A+ K P ++ MP D+N VF EE + P
Sbjct: 59 DKVIVVDQSSNPKGFQFYATAARTGKGPDVVFGMPHDNNGVFAEEGLMAPVP 110
>pdb|3DGH|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
C-Terminal 8- Residue Truncation
pdb|3DGH|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
C-Terminal 8- Residue Truncation
Length = 483
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVD-PSPLSTWPNNYGV 129
YD+I+IG G AGL A++ + + +V C+D P T +GV
Sbjct: 10 YDLIVIGGGSAGLACAKE-AVLNGARVACLDFVKPTPTLGTKWGV 53
>pdb|1TZL|A Chain A, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|B Chain B, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|C Chain C, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|D Chain D, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|E Chain E, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|F Chain F, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|G Chain G, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|H Chain H, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp
Length = 622
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 80 PSDRIRYDVIIIGTGPAGLRLAEQV 104
P I+YDV+I+G+GP G A ++
Sbjct: 40 PGXDIKYDVVIVGSGPIGCTYAREL 64
>pdb|1URD|A Chain A, X-Ray Structures Of The Maltose-Maltodextrin Binding
Protein Of The Thermoacidophilic Bacterium
Alicyclobacillus Acidocaldarius Provide Insight Into
Acid Stability Of Proteins
pdb|1URD|B Chain B, X-Ray Structures Of The Maltose-Maltodextrin Binding
Protein Of The Thermoacidophilic Bacterium
Alicyclobacillus Acidocaldarius Provide Insight Into
Acid Stability Of Proteins
Length = 370
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 258 DKMVLMDWRDSHLGNEPYLRASNL-KLPTFLYAMPFDSNLVFLEETSLVSRP 308
DK++++D + G + Y A+ K P ++ MP D+N VF EE + P
Sbjct: 30 DKVIVVDQSSNPKGFQFYATAARTGKGPDVVFGMPHDNNGVFAEEGLMAPVP 81
>pdb|3DH9|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
pdb|3DH9|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
Length = 482
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVD-PSPLSTWPNNYGV 129
YD+I+IG G AGL A++ + + +V C+D P T +GV
Sbjct: 6 YDLIVIGGGSAGLACAKE-AVLNGARVACLDFVKPTPTLGTKWGV 49
>pdb|2NVK|X Chain X, Crystal Structure Of Thioredoxin Reductase From Drosophila
Melanogaster
Length = 488
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVD-PSPLSTWPNNYGV 129
YD+I+IG G AGL A++ + + +V C+D P T +GV
Sbjct: 10 YDLIVIGGGSAGLACAKE-AVLNGARVACLDFVKPTPTLGTKWGV 53
>pdb|1V0J|A Chain A, Udp-galactopyranose Mutase From Mycobacterium Tuberculosis
pdb|1V0J|B Chain B, Udp-galactopyranose Mutase From Mycobacterium Tuberculosis
pdb|1V0J|C Chain C, Udp-galactopyranose Mutase From Mycobacterium Tuberculosis
pdb|1V0J|D Chain D, Udp-galactopyranose Mutase From Mycobacterium Tuberculosis
Length = 399
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 24/35 (68%)
Query: 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119
R+D+ ++G+G GL +AE+V+++ +V ++ P
Sbjct: 7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRP 41
>pdb|3K4B|A Chain A, Pyranose 2-Oxidase T169s Mutant
pdb|3LSK|A Chain A, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|B Chain B, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|C Chain C, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|D Chain D, Pyranose 2-Oxidase T169s Acetate Complex
Length = 623
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 80 PSDRIRYDVIIIGTGPAGLRLAEQV 104
P I+YDV+I+G+GP G A ++
Sbjct: 41 PGMDIKYDVVIVGSGPIGCTYAREL 65
>pdb|3FDY|A Chain A, Pyranose 2-Oxidase Thermostable Triple Mutant,
T169gE542KV546C
Length = 623
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 80 PSDRIRYDVIIIGTGPAGLRLAEQV 104
P I+YDV+I+G+GP G A ++
Sbjct: 41 PGMDIKYDVVIVGSGPIGCTYAREL 65
>pdb|3BG7|A Chain A, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|B Chain B, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|C Chain C, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|D Chain D, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|E Chain E, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|F Chain F, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|G Chain G, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|H Chain H, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
Length = 623
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 80 PSDRIRYDVIIIGTGPAGLRLAEQV 104
P I+YDV+I+G+GP G A ++
Sbjct: 41 PGMDIKYDVVIVGSGPIGCTYAREL 65
>pdb|1TT0|A Chain A, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|B Chain B, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|C Chain C, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|D Chain D, Crystal Structure Of Pyranose 2-Oxidase
pdb|2IGK|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase
Length = 623
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 80 PSDRIRYDVIIIGTGPAGLRLAEQV 104
P I+YDV+I+G+GP G A ++
Sbjct: 41 PGMDIKYDVVIVGSGPIGCTYAREL 65
>pdb|3BLY|A Chain A, Pyranose 2-Oxidase From Trametes Multicolor, E542kL537W
Length = 623
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 80 PSDRIRYDVIIIGTGPAGLRLAEQV 104
P I+YDV+I+G+GP G A ++
Sbjct: 41 PGMDIKYDVVIVGSGPIGCTYAREL 65
>pdb|3LSH|A Chain A, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|B Chain B, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|C Chain C, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|D Chain D, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSI|A Chain A, Pyranose 2-Oxidase T169a, Tetragonal
pdb|3LSI|B Chain B, Pyranose 2-Oxidase T169a, Tetragonal
Length = 623
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 80 PSDRIRYDVIIIGTGPAGLRLAEQV 104
P I+YDV+I+G+GP G A ++
Sbjct: 41 PGMDIKYDVVIVGSGPIGCTYAREL 65
>pdb|3K4M|A Chain A, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|B Chain B, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|C Chain C, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|D Chain D, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|E Chain E, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|F Chain F, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|G Chain G, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|H Chain H, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
Length = 623
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 80 PSDRIRYDVIIIGTGPAGLRLAEQV 104
P I+YDV+I+G+GP G A ++
Sbjct: 41 PGMDIKYDVVIVGSGPIGCTYAREL 65
>pdb|3K4C|A Chain A, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|B Chain B, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|C Chain C, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|D Chain D, Pyranose 2-Oxidase H167aT169G MUTANT
Length = 623
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 80 PSDRIRYDVIIIGTGPAGLRLAEQV 104
P I+YDV+I+G+GP G A ++
Sbjct: 41 PGMDIKYDVVIVGSGPIGCTYAREL 65
>pdb|3BG6|A Chain A, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|B Chain B, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|C Chain C, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|D Chain D, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|E Chain E, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|F Chain F, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|G Chain G, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|H Chain H, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
Length = 623
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 80 PSDRIRYDVIIIGTGPAGLRLAEQV 104
P I+YDV+I+G+GP G A ++
Sbjct: 41 PGMDIKYDVVIVGSGPIGCTYAREL 65
>pdb|3K4K|A Chain A, Pyranose 2-Oxidase F454n Mutant
pdb|3K4L|A Chain A, Pyranose 2-Oxidase F454n Mutant In Complex With 2fg
pdb|3K4L|B Chain B, Pyranose 2-Oxidase F454n Mutant In Complex With 2fg
Length = 623
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 80 PSDRIRYDVIIIGTGPAGLRLAEQV 104
P I+YDV+I+G+GP G A ++
Sbjct: 41 PGMDIKYDVVIVGSGPIGCTYAREL 65
>pdb|2IGM|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
Length = 623
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 80 PSDRIRYDVIIIGTGPAGLRLAEQV 104
P I+YDV+I+G+GP G A ++
Sbjct: 41 PGMDIKYDVVIVGSGPIGCTYAREL 65
>pdb|3K4N|A Chain A, Pyranose 2-Oxidase F454aS455AY456A MUTANT
pdb|3K4N|B Chain B, Pyranose 2-Oxidase F454aS455AY456A MUTANT
Length = 623
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 80 PSDRIRYDVIIIGTGPAGLRLAEQV 104
P I+YDV+I+G+GP G A ++
Sbjct: 41 PGMDIKYDVVIVGSGPIGCTYAREL 65
>pdb|3K4J|A Chain A, Pyranose 2-Oxidase H450q Mutant
Length = 623
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 80 PSDRIRYDVIIIGTGPAGLRLAEQV 104
P I+YDV+I+G+GP G A ++
Sbjct: 41 PGMDIKYDVVIVGSGPIGCTYAREL 65
>pdb|2IGN|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGO|A Chain A, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|B Chain B, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|D Chain D, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|C Chain C, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|E Chain E, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|F Chain F, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|H Chain H, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|G Chain G, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|3LSM|A Chain A, Pyranose 2-Oxidase H167a Mutant With Flavin N(5) Sulfite
Adduct
pdb|3LSM|B Chain B, Pyranose 2-Oxidase H167a Mutant With Flavin N(5) Sulfite
Adduct
pdb|3PL8|A Chain A, Pyranose 2-Oxidase H167a Complex With
3-Deoxy-3-Fluoro-Beta-D-Glucose
Length = 623
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 80 PSDRIRYDVIIIGTGPAGLRLAEQV 104
P I+YDV+I+G+GP G A ++
Sbjct: 41 PGMDIKYDVVIVGSGPIGCTYAREL 65
>pdb|2F5V|A Chain A, Reaction Geometry And Thermostability Mutant Of Pyranose
2-Oxidase From The White-Rot Fungus Peniophora Sp
Length = 595
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 80 PSDRIRYDVIIIGTGPAGLRLAEQV 104
P I+YDV+I+G+GP G A ++
Sbjct: 13 PGMDIKYDVVIVGSGPIGCTYAREL 37
>pdb|2F6C|A Chain A, Reaction Geometry And Thermostability Of Pyranose
2-Oxidase From The White-Rot Fungus Peniophora Sp.,
Thermostability Mutant E542k
Length = 595
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 80 PSDRIRYDVIIIGTGPAGLRLAEQV 104
P I+YDV+I+G+GP G A ++
Sbjct: 13 PGMDIKYDVVIVGSGPIGCTYAREL 37
>pdb|1IPJ|A Chain A, Crystal Structures Of Recombinant And Native Soybean
Beta-Conglycinin Beta Homotrimers Complexes With
N-Acetyl-D-Glucosamine
pdb|1IPJ|B Chain B, Crystal Structures Of Recombinant And Native Soybean
Beta-Conglycinin Beta Homotrimers Complexes With
N-Acetyl-D-Glucosamine
pdb|1IPJ|C Chain C, Crystal Structures Of Recombinant And Native Soybean
Beta-Conglycinin Beta Homotrimers Complexes With
N-Acetyl-D-Glucosamine
Length = 416
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 17/64 (26%)
Query: 51 IRTSKFGNFLELTPESVPEFLDFD--------------LPWFHPSDRIRYDVIIIGTGPA 96
I ++ FG F E+TPE P+ D D LP F+ + +++I G A
Sbjct: 225 IYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIV---ILVINEGDA 281
Query: 97 GLRL 100
+ L
Sbjct: 282 NIEL 285
>pdb|1IPK|A Chain A, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
pdb|1IPK|B Chain B, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
pdb|1IPK|C Chain C, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
Length = 416
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 17/64 (26%)
Query: 51 IRTSKFGNFLELTPESVPEFLDFD--------------LPWFHPSDRIRYDVIIIGTGPA 96
I ++ FG F E+TPE P+ D D LP F+ + +++I G A
Sbjct: 225 IYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIV---ILVINEGDA 281
Query: 97 GLRL 100
+ L
Sbjct: 282 NIEL 285
>pdb|1UIJ|A Chain A, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|B Chain B, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|C Chain C, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|D Chain D, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|E Chain E, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|F Chain F, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
Length = 416
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 51 IRTSKFGNFLELTPESVPEFLDFDL 75
I ++ FG F E+TPE P+ D D+
Sbjct: 225 IYSNNFGKFFEITPEKNPQLRDLDI 249
>pdb|2I0Z|A Chain A, Crystal Structure Of A Fad Binding Protein From Bacillus
Cereus, A Putative Nad(Fad)-Utilizing Dehydrogenases
Length = 447
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 77 WFHPSDRIRYDVIIIGTGPAGL 98
+ S+ + YDVI+IG GP+GL
Sbjct: 18 LYFQSNAMHYDVIVIGGGPSGL 39
>pdb|1VKK|A Chain A, Crystal Structure Of Glia Maturation Factor-Gamma (Gmfg)
From Mus Musculus At 1.50 A Resolution
Length = 154
Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 60 LELTPESVPEFLDFDLPWFHPSDRIRYDVIIIGTGPAGLRLAEQV 104
LEL PE P F+ + + H R+ Y + I + P G + +Q+
Sbjct: 71 LEL-PERQPRFVVYSYKYVHDDGRVSYPLCFIFSSPVGCKPEQQM 114
>pdb|1FEA|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|C Chain C, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|D Chain D, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEB|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.0 Angstrom Resolution
pdb|1FEB|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.0 Angstrom Resolution
pdb|1FEC|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 1.7 Angstrom Resolution
pdb|1FEC|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 1.7 Angstrom Resolution
Length = 490
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVD 116
YD+++IG G GL +S H +V +D
Sbjct: 4 YDLVVIGAGSGGLEAGWNAASLHKKRVAVID 34
>pdb|1TYT|A Chain A, Crystal And Molecular Structure Of Crithidia Fasciculata
Trypanothione Reductase At 2.6 Angstroms Resolution
pdb|1TYT|B Chain B, Crystal And Molecular Structure Of Crithidia Fasciculata
Trypanothione Reductase At 2.6 Angstroms Resolution
Length = 487
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVD 116
YD+++IG G GL +S H +V +D
Sbjct: 5 YDLVVIGAGSGGLEAGWNAASLHKKRVAVID 35
>pdb|1TYP|A Chain A, Substrate Interactions Between Trypanothione Reductase And
N1-Glutathionylspermidine Disulphide At 0.28-Nm
Resolution
pdb|1TYP|B Chain B, Substrate Interactions Between Trypanothione Reductase And
N1-Glutathionylspermidine Disulphide At 0.28-Nm
Resolution
Length = 487
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVD 116
YD+++IG G GL +S H +V +D
Sbjct: 5 YDLVVIGAGSGGLEAGWNAASLHKKRVAVID 35
>pdb|2TPR|A Chain A, X-ray Structure Of Trypanothione Reductase From Crithidia
Fasciculata At 2.4 Angstroms Resolution
pdb|2TPR|B Chain B, X-ray Structure Of Trypanothione Reductase From Crithidia
Fasciculata At 2.4 Angstroms Resolution
Length = 490
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVD 116
YD+++IG G GL +S H +V +D
Sbjct: 4 YDLVVIGAGSGGLEAGWNAASLHKKRVAVID 34
>pdb|3FPZ|A Chain A, Saccharomyces Cerevisiae Thi4p Is A Suicide Thiamin
Thiazole Synthase
pdb|3FPZ|B Chain B, Saccharomyces Cerevisiae Thi4p Is A Suicide Thiamin
Thiazole Synthase
Length = 326
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 87 DVIIIGTGPAGLRLAEQVS-SRHSVKVCCVDPS 118
DVII+G G +GL A ++ +R +KVC ++ S
Sbjct: 67 DVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESS 99
>pdb|1PN0|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|B Chain B, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|C Chain C, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|D Chain D, Phenol Hydroxylase From Trichosporon Cutaneum
Length = 665
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Query: 87 DVIIIGTGPAGLR----LAEQVSSRHSVKVCCVD 116
DV+I+G GPAGL L+E V + +KV +D
Sbjct: 10 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIID 43
>pdb|1FOH|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|B Chain B, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|C Chain C, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|D Chain D, Phenol Hydroxylase From Trichosporon Cutaneum
Length = 664
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Query: 87 DVIIIGTGPAGLR----LAEQVSSRHSVKVCCVD 116
DV+I+G GPAGL L+E V + +KV +D
Sbjct: 9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIID 42
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,421,114
Number of Sequences: 62578
Number of extensions: 600194
Number of successful extensions: 11882
Number of sequences better than 100.0: 92
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 11793
Number of HSP's gapped (non-prelim): 107
length of query: 503
length of database: 14,973,337
effective HSP length: 103
effective length of query: 400
effective length of database: 8,527,803
effective search space: 3411121200
effective search space used: 3411121200
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)