Query 010693
Match_columns 503
No_of_seqs 352 out of 3515
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 03:29:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010693.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010693hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02463 lycopene beta cyclase 100.0 3E-73 6.4E-78 584.4 44.8 444 59-503 2-447 (447)
2 PLN02697 lycopene epsilon cycl 100.0 5E-64 1.1E-68 522.9 45.0 438 56-500 80-528 (529)
3 TIGR01790 carotene-cycl lycope 100.0 1.7E-49 3.6E-54 407.6 42.4 387 87-483 1-388 (388)
4 PF05834 Lycopene_cycl: Lycope 100.0 2.8E-48 6E-53 394.8 36.9 366 87-480 1-373 (374)
5 TIGR01789 lycopene_cycl lycope 100.0 3.8E-44 8.3E-49 362.9 31.3 346 87-468 1-358 (370)
6 TIGR02023 BchP-ChlP geranylger 100.0 3.7E-34 8.1E-39 293.4 35.0 331 86-445 1-351 (388)
7 PLN00093 geranylgeranyl diphos 100.0 2E-33 4.3E-38 290.9 35.1 334 82-443 36-398 (450)
8 TIGR02028 ChlP geranylgeranyl 100.0 1.5E-32 3.2E-37 281.7 34.0 332 86-445 1-361 (398)
9 COG0644 FixC Dehydrogenases (f 100.0 3.6E-32 7.8E-37 279.0 32.7 319 84-421 2-336 (396)
10 COG0654 UbiH 2-polyprenyl-6-me 100.0 2.1E-30 4.6E-35 265.4 30.1 304 85-407 2-333 (387)
11 TIGR02032 GG-red-SF geranylger 100.0 2.6E-29 5.7E-34 247.7 30.0 282 86-386 1-295 (295)
12 PRK11445 putative oxidoreducta 100.0 3E-29 6.4E-34 253.6 29.7 295 85-408 1-315 (351)
13 PRK08013 oxidoreductase; Provi 100.0 2.7E-29 5.9E-34 258.5 29.8 304 84-407 2-340 (400)
14 PRK08020 ubiF 2-octaprenyl-3-m 100.0 7.9E-29 1.7E-33 254.6 31.1 300 84-406 4-338 (391)
15 PRK08773 2-octaprenyl-3-methyl 100.0 8.7E-29 1.9E-33 254.3 31.2 305 82-406 3-339 (392)
16 PRK10015 oxidoreductase; Provi 100.0 1.4E-28 3.1E-33 254.2 32.9 354 84-445 4-393 (429)
17 PRK06184 hypothetical protein; 100.0 9.1E-29 2E-33 261.8 30.7 305 84-408 2-336 (502)
18 PRK07494 2-octaprenyl-6-methox 100.0 6.3E-29 1.4E-33 255.1 28.5 305 83-407 5-335 (388)
19 PRK06617 2-octaprenyl-6-methox 100.0 8.9E-29 1.9E-33 252.4 29.1 294 85-407 1-321 (374)
20 PRK07364 2-octaprenyl-6-methox 100.0 1.2E-28 2.5E-33 255.4 30.1 306 81-406 14-351 (415)
21 PRK07333 2-octaprenyl-6-methox 100.0 8.8E-29 1.9E-33 255.3 28.9 299 85-404 1-335 (403)
22 PF01494 FAD_binding_3: FAD bi 100.0 1.7E-29 3.7E-34 255.4 22.4 302 85-407 1-346 (356)
23 PRK05714 2-octaprenyl-3-methyl 100.0 7.9E-29 1.7E-33 255.8 27.7 302 85-407 2-343 (405)
24 PRK08244 hypothetical protein; 100.0 7.7E-28 1.7E-32 254.3 34.1 303 85-408 2-328 (493)
25 PRK09126 hypothetical protein; 100.0 1.2E-28 2.7E-33 253.2 26.9 305 83-408 1-339 (392)
26 TIGR01984 UbiH 2-polyprenyl-6- 100.0 2.4E-28 5.3E-33 250.2 28.2 301 87-408 1-332 (382)
27 PRK08850 2-octaprenyl-6-methox 100.0 2.8E-28 6.1E-33 251.5 28.6 303 84-406 3-339 (405)
28 PRK10157 putative oxidoreducta 100.0 8.5E-28 1.8E-32 248.7 31.7 346 84-445 4-392 (428)
29 PRK06834 hypothetical protein; 100.0 2.3E-27 5.1E-32 248.8 35.3 300 84-408 2-321 (488)
30 PRK08849 2-octaprenyl-3-methyl 100.0 4E-28 8.6E-33 248.6 28.6 301 84-407 2-332 (384)
31 TIGR01988 Ubi-OHases Ubiquinon 100.0 4.8E-28 1E-32 248.2 29.2 302 87-408 1-335 (385)
32 TIGR01989 COQ6 Ubiquinone bios 100.0 8.1E-28 1.7E-32 250.1 30.8 305 86-406 1-390 (437)
33 PRK08243 4-hydroxybenzoate 3-m 100.0 1.4E-27 3.1E-32 245.2 31.6 305 85-408 2-334 (392)
34 PRK07608 ubiquinone biosynthes 100.0 8.9E-28 1.9E-32 246.6 29.0 304 84-407 4-337 (388)
35 PRK07190 hypothetical protein; 100.0 2.6E-27 5.6E-32 248.2 32.7 300 84-408 4-331 (487)
36 PRK05732 2-octaprenyl-6-methox 100.0 1.8E-27 3.8E-32 245.0 29.7 305 83-408 1-341 (395)
37 PRK06183 mhpA 3-(3-hydroxyphen 100.0 2.7E-27 5.8E-32 252.5 29.6 304 83-408 8-342 (538)
38 PRK07588 hypothetical protein; 100.0 2.7E-27 5.8E-32 243.2 27.5 302 86-407 1-332 (391)
39 PRK07045 putative monooxygenas 100.0 3.6E-27 7.9E-32 242.0 28.4 304 84-407 4-341 (388)
40 PRK08294 phenol 2-monooxygenas 100.0 1E-26 2.2E-31 250.5 33.1 308 83-408 30-396 (634)
41 PRK06185 hypothetical protein; 100.0 5.3E-27 1.1E-31 242.4 29.3 305 84-407 5-340 (407)
42 PRK06996 hypothetical protein; 100.0 6.9E-27 1.5E-31 240.5 28.1 300 83-406 9-342 (398)
43 PRK06753 hypothetical protein; 100.0 4.4E-27 9.4E-32 240.2 25.7 296 86-409 1-323 (373)
44 PRK07538 hypothetical protein; 100.0 8E-27 1.7E-31 241.3 27.6 300 86-408 1-350 (413)
45 PRK06847 hypothetical protein; 100.0 2.8E-26 6.1E-31 234.4 29.7 300 85-407 4-334 (375)
46 PRK06475 salicylate hydroxylas 100.0 1.9E-26 4.2E-31 237.4 27.9 305 86-407 3-343 (400)
47 PRK08132 FAD-dependent oxidore 100.0 8.7E-26 1.9E-30 241.5 31.9 308 82-408 20-355 (547)
48 PRK08163 salicylate hydroxylas 100.0 2.5E-26 5.5E-31 236.5 26.2 299 85-407 4-339 (396)
49 PRK05868 hypothetical protein; 100.0 3.7E-26 7.9E-31 232.6 27.0 301 86-408 2-336 (372)
50 PTZ00367 squalene epoxidase; P 100.0 2.9E-25 6.4E-30 234.6 34.3 287 82-390 30-375 (567)
51 TIGR02360 pbenz_hydroxyl 4-hyd 100.0 9.4E-26 2E-30 231.2 29.8 301 85-408 2-334 (390)
52 PLN02985 squalene monooxygenas 99.9 1.4E-25 3E-30 236.0 30.2 308 81-408 39-385 (514)
53 PRK06126 hypothetical protein; 99.9 2.4E-25 5.2E-30 238.2 32.1 306 83-408 5-359 (545)
54 PRK07236 hypothetical protein; 99.9 2.2E-25 4.8E-30 228.5 28.7 149 82-233 3-160 (386)
55 PLN02927 antheraxanthin epoxid 99.9 7.5E-25 1.6E-29 232.6 32.9 308 82-407 78-429 (668)
56 TIGR03219 salicylate_mono sali 99.9 1.8E-24 4E-29 223.8 23.8 311 87-408 2-357 (414)
57 KOG2614 Kynurenine 3-monooxyge 99.9 2.3E-24 5E-29 210.0 21.3 289 85-392 2-328 (420)
58 PF04820 Trp_halogenase: Trypt 99.9 5.5E-22 1.2E-26 205.8 25.6 296 87-412 1-373 (454)
59 PRK08255 salicylyl-CoA 5-hydro 99.9 1.5E-20 3.3E-25 207.3 21.9 290 86-408 1-323 (765)
60 KOG3855 Monooxygenase involved 99.9 3.3E-20 7.1E-25 179.6 21.0 303 81-398 32-416 (481)
61 KOG1298 Squalene monooxygenase 99.8 9.4E-18 2E-22 161.0 20.9 286 81-388 41-362 (509)
62 COG2081 Predicted flavoprotein 99.6 2.3E-14 5.1E-19 140.2 15.4 139 83-227 1-167 (408)
63 PF01266 DAO: FAD dependent ox 99.6 1.4E-13 3E-18 139.2 20.1 83 168-252 143-228 (358)
64 KOG2415 Electron transfer flav 99.6 4.5E-13 9.7E-18 130.1 21.2 307 82-410 73-446 (621)
65 PRK11259 solA N-methyltryptoph 99.5 3.7E-12 7.9E-17 130.2 27.1 61 167-228 144-205 (376)
66 PRK13369 glycerol-3-phosphate 99.5 4.1E-12 8.8E-17 134.6 27.4 205 168-391 151-379 (502)
67 PF03486 HI0933_like: HI0933-l 99.5 1.1E-13 2.3E-18 141.2 13.9 136 86-227 1-166 (409)
68 PRK12266 glpD glycerol-3-phosp 99.5 8.4E-12 1.8E-16 132.1 28.6 205 168-391 151-380 (508)
69 PRK04176 ribulose-1,5-biphosph 99.5 1.2E-13 2.6E-18 132.8 11.7 138 82-231 22-177 (257)
70 TIGR00292 thiazole biosynthesi 99.5 1.6E-13 3.5E-18 131.4 12.2 136 84-231 20-174 (254)
71 PRK01747 mnmC bifunctional tRN 99.5 6E-12 1.3E-16 137.8 25.2 61 167-228 403-464 (662)
72 PF01946 Thi4: Thi4 family; PD 99.5 1.3E-13 2.9E-18 124.5 9.8 136 84-231 16-169 (230)
73 PRK05192 tRNA uridine 5-carbox 99.5 8.1E-13 1.8E-17 138.9 16.4 142 84-227 3-157 (618)
74 TIGR03329 Phn_aa_oxid putative 99.5 2.3E-12 5E-17 135.1 19.2 59 167-227 178-237 (460)
75 TIGR01377 soxA_mon sarcosine o 99.5 3E-11 6.4E-16 123.7 26.8 66 167-233 140-207 (380)
76 PRK00711 D-amino acid dehydrog 99.4 1.4E-11 3E-16 127.8 22.9 60 168-228 197-258 (416)
77 TIGR01373 soxB sarcosine oxida 99.4 2.4E-11 5.2E-16 125.6 24.5 65 168-233 179-247 (407)
78 COG1635 THI4 Ribulose 1,5-bisp 99.4 6.8E-13 1.5E-17 119.0 10.5 139 83-231 28-182 (262)
79 PRK12409 D-amino acid dehydrog 99.4 2E-11 4.4E-16 126.3 22.7 60 169-228 194-259 (410)
80 PRK11728 hydroxyglutarate oxid 99.4 3.1E-11 6.6E-16 124.2 23.3 84 167-251 144-230 (393)
81 COG0665 DadA Glycine/D-amino a 99.4 5.6E-11 1.2E-15 121.9 21.1 60 168-228 152-213 (387)
82 PLN02464 glycerol-3-phosphate 99.3 6.2E-10 1.3E-14 120.4 28.7 202 168-389 228-454 (627)
83 PRK11101 glpA sn-glycerol-3-ph 99.3 3.3E-10 7.2E-15 121.0 25.2 202 167-390 144-371 (546)
84 KOG2820 FAD-dependent oxidored 99.3 2.4E-10 5.3E-15 109.0 18.1 144 81-226 3-211 (399)
85 PF13738 Pyr_redox_3: Pyridine 99.3 7.4E-12 1.6E-16 116.4 7.7 133 89-228 1-139 (203)
86 TIGR00136 gidA glucose-inhibit 99.3 8.9E-11 1.9E-15 123.4 16.0 140 86-227 1-154 (617)
87 COG0578 GlpA Glycerol-3-phosph 99.3 2.5E-09 5.4E-14 110.6 26.2 205 169-391 161-388 (532)
88 PF01134 GIDA: Glucose inhibit 99.3 8.8E-11 1.9E-15 117.5 14.7 135 87-225 1-150 (392)
89 COG0492 TrxB Thioredoxin reduc 99.2 2.3E-10 5E-15 112.2 16.6 118 84-232 2-120 (305)
90 TIGR03364 HpnW_proposed FAD de 99.2 3.2E-09 6.9E-14 108.2 23.6 56 168-228 141-198 (365)
91 COG0579 Predicted dehydrogenas 99.2 3.4E-10 7.3E-15 114.7 15.8 169 83-252 1-238 (429)
92 TIGR01292 TRX_reduct thioredox 99.2 4.2E-10 9.1E-15 111.1 16.0 114 86-229 1-114 (300)
93 PLN02172 flavin-containing mon 99.2 4.1E-10 8.8E-15 117.4 14.1 139 83-227 8-173 (461)
94 PRK07233 hypothetical protein; 99.1 1.8E-08 4E-13 104.9 26.1 54 173-226 199-253 (434)
95 PRK15317 alkyl hydroperoxide r 99.1 5.6E-10 1.2E-14 118.8 14.8 115 83-229 209-324 (517)
96 PF12831 FAD_oxidored: FAD dep 99.1 3.3E-11 7.1E-16 125.1 4.8 137 87-227 1-150 (428)
97 PLN02661 Putative thiazole syn 99.1 9.5E-10 2.1E-14 108.5 12.7 134 82-228 89-245 (357)
98 TIGR03143 AhpF_homolog putativ 99.1 1.5E-09 3.2E-14 116.3 14.6 115 85-231 4-118 (555)
99 TIGR03140 AhpF alkyl hydropero 99.1 1.8E-09 4E-14 114.7 15.1 115 82-228 209-324 (515)
100 PF08491 SE: Squalene epoxidas 99.1 5.7E-09 1.2E-13 99.0 16.6 157 216-389 2-167 (276)
101 TIGR00275 flavoprotein, HI0933 99.1 1.6E-09 3.5E-14 111.4 13.7 132 89-227 1-160 (400)
102 KOG0042 Glycerol-3-phosphate d 99.0 2.2E-09 4.8E-14 108.1 12.4 262 82-360 64-421 (680)
103 PRK07804 L-aspartate oxidase; 99.0 7.1E-09 1.5E-13 110.7 16.3 148 82-230 13-213 (541)
104 TIGR01424 gluta_reduc_2 glutat 99.0 1.3E-09 2.8E-14 113.9 10.5 135 85-229 2-144 (446)
105 PTZ00383 malate:quinone oxidor 99.0 4.3E-09 9.3E-14 110.3 13.8 66 167-233 206-280 (497)
106 PRK05976 dihydrolipoamide dehy 99.0 1.7E-09 3.6E-14 114.0 10.7 138 84-228 3-155 (472)
107 TIGR00562 proto_IX_ox protopor 99.0 1.9E-07 4.1E-12 98.3 25.6 40 187-226 238-278 (462)
108 COG3380 Predicted NAD/FAD-depe 99.0 1.7E-08 3.8E-13 93.7 14.8 130 86-225 2-158 (331)
109 PLN02612 phytoene desaturase 99.0 3E-07 6.6E-12 98.7 26.9 51 175-225 311-364 (567)
110 PRK05249 soluble pyridine nucl 99.0 4.1E-09 9E-14 110.8 12.4 139 83-229 3-151 (461)
111 PRK10262 thioredoxin reductase 99.0 1.7E-08 3.7E-13 100.9 16.0 116 83-229 4-119 (321)
112 PLN02507 glutathione reductase 99.0 5.1E-09 1.1E-13 110.7 12.5 139 83-229 23-181 (499)
113 PRK06116 glutathione reductase 98.9 3.4E-09 7.4E-14 111.0 10.8 135 84-229 3-145 (450)
114 KOG2853 Possible oxidoreductas 98.9 2.1E-07 4.5E-12 89.1 21.5 67 167-233 238-327 (509)
115 PTZ00058 glutathione reductase 98.9 3.1E-09 6.8E-14 113.1 10.0 141 81-229 44-216 (561)
116 PRK14694 putative mercuric red 98.9 9.9E-09 2.2E-13 108.0 13.6 141 82-231 3-156 (468)
117 PRK06467 dihydrolipoamide dehy 98.9 5.6E-09 1.2E-13 109.8 11.0 136 84-228 3-149 (471)
118 PRK06481 fumarate reductase fl 98.9 2.4E-08 5.2E-13 105.9 15.9 143 84-227 60-251 (506)
119 PF13454 NAD_binding_9: FAD-NA 98.9 1.2E-08 2.7E-13 90.6 11.6 131 89-225 1-155 (156)
120 PRK08401 L-aspartate oxidase; 98.9 2E-08 4.2E-13 105.5 14.7 145 86-231 2-179 (466)
121 PRK08274 tricarballylate dehyd 98.9 3.2E-08 7E-13 104.2 16.4 143 84-227 3-192 (466)
122 PRK12416 protoporphyrinogen ox 98.9 5.9E-07 1.3E-11 94.5 25.7 38 187-224 239-277 (463)
123 COG2072 TrkA Predicted flavopr 98.9 1.6E-08 3.4E-13 105.1 13.4 131 82-227 5-144 (443)
124 PRK08010 pyridine nucleotide-d 98.9 1.3E-08 2.9E-13 106.2 13.0 123 84-230 2-134 (441)
125 PRK11883 protoporphyrinogen ox 98.9 7.1E-07 1.5E-11 93.5 25.9 40 188-227 235-275 (451)
126 PRK13339 malate:quinone oxidor 98.9 2.2E-08 4.7E-13 104.7 14.0 84 168-251 180-275 (497)
127 PRK06416 dihydrolipoamide dehy 98.9 2.7E-08 5.8E-13 104.6 14.9 136 84-228 3-147 (462)
128 TIGR01421 gluta_reduc_1 glutat 98.9 7.7E-09 1.7E-13 108.2 10.4 133 85-229 2-143 (450)
129 TIGR01320 mal_quin_oxido malat 98.9 2.2E-08 4.8E-13 105.1 13.8 85 168-252 174-269 (483)
130 PRK06327 dihydrolipoamide dehy 98.9 1.4E-08 3.1E-13 107.0 12.3 139 84-228 3-158 (475)
131 PRK05945 sdhA succinate dehydr 98.9 2.7E-08 5.9E-13 107.1 14.5 58 172-229 135-199 (575)
132 PRK06370 mercuric reductase; V 98.9 1.4E-08 3.1E-13 106.7 12.1 136 83-231 3-149 (463)
133 TIGR01813 flavo_cyto_c flavocy 98.9 4E-08 8.7E-13 102.6 15.4 141 87-228 1-193 (439)
134 PRK05257 malate:quinone oxidor 98.9 3.6E-08 7.9E-13 103.7 15.0 84 168-251 179-274 (494)
135 PF00890 FAD_binding_2: FAD bi 98.9 2.8E-08 6E-13 103.2 14.0 59 170-228 139-204 (417)
136 PRK06115 dihydrolipoamide dehy 98.9 1.5E-08 3.2E-13 106.6 11.7 135 84-227 2-148 (466)
137 TIGR00551 nadB L-aspartate oxi 98.9 2.7E-08 5.8E-13 105.2 13.6 145 85-231 2-193 (488)
138 TIGR01812 sdhA_frdA_Gneg succi 98.9 2.6E-08 5.7E-13 107.3 13.7 59 172-230 129-194 (566)
139 PRK06854 adenylylsulfate reduc 98.9 4.2E-08 9E-13 106.1 15.2 144 84-228 10-196 (608)
140 KOG1399 Flavin-containing mono 98.8 2E-08 4.4E-13 103.1 12.0 141 83-226 4-152 (448)
141 COG1249 Lpd Pyruvate/2-oxoglut 98.8 1.9E-08 4.1E-13 103.7 11.7 139 83-231 2-151 (454)
142 PRK07251 pyridine nucleotide-d 98.8 2.1E-08 4.5E-13 104.7 12.3 123 84-230 2-133 (438)
143 COG2509 Uncharacterized FAD-de 98.8 6.7E-08 1.4E-12 96.4 14.3 176 82-257 15-265 (486)
144 PLN02546 glutathione reductase 98.8 2.9E-08 6.2E-13 105.8 12.4 137 83-230 77-231 (558)
145 PRK07121 hypothetical protein; 98.8 1E-07 2.2E-12 101.0 16.4 57 171-227 176-239 (492)
146 PRK06175 L-aspartate oxidase; 98.8 4.2E-08 9.1E-13 101.9 13.2 143 84-228 3-190 (433)
147 PRK13748 putative mercuric red 98.8 4.4E-08 9.5E-13 105.6 13.1 138 84-230 97-247 (561)
148 PRK07573 sdhA succinate dehydr 98.8 6.4E-08 1.4E-12 105.1 14.3 39 81-120 31-69 (640)
149 PRK09231 fumarate reductase fl 98.8 4.8E-08 1E-12 105.1 13.0 146 84-230 3-199 (582)
150 PRK07818 dihydrolipoamide dehy 98.8 3.7E-08 8E-13 103.6 11.6 135 85-228 4-148 (466)
151 COG0445 GidA Flavin-dependent 98.8 1.1E-08 2.4E-13 103.9 6.9 140 84-226 3-157 (621)
152 TIGR01350 lipoamide_DH dihydro 98.8 3.5E-08 7.5E-13 103.8 11.1 135 85-228 1-144 (461)
153 PTZ00139 Succinate dehydrogena 98.8 5.7E-08 1.2E-12 105.1 12.9 144 84-228 28-230 (617)
154 PRK09897 hypothetical protein; 98.8 1.2E-07 2.7E-12 99.9 15.1 140 86-227 2-166 (534)
155 PF07992 Pyr_redox_2: Pyridine 98.8 8.1E-09 1.8E-13 95.6 5.5 113 87-228 1-123 (201)
156 TIGR02053 MerA mercuric reduct 98.8 2.6E-08 5.7E-13 104.7 9.9 133 86-230 1-143 (463)
157 COG1232 HemY Protoporphyrinoge 98.8 2.2E-06 4.8E-11 87.8 23.4 39 186-224 226-265 (444)
158 TIGR02730 carot_isom carotene 98.8 1.2E-07 2.5E-12 100.6 14.8 61 172-232 229-291 (493)
159 PRK07845 flavoprotein disulfid 98.8 7.4E-08 1.6E-12 101.3 13.1 139 86-228 2-152 (466)
160 PRK05335 tRNA (uracil-5-)-meth 98.8 5.8E-08 1.3E-12 98.3 11.6 110 85-198 2-126 (436)
161 PF00743 FMO-like: Flavin-bind 98.8 5.8E-08 1.3E-12 102.8 12.0 133 87-228 3-151 (531)
162 TIGR00137 gid_trmFO tRNA:m(5)U 98.7 7.6E-08 1.7E-12 98.1 12.3 110 86-198 1-124 (433)
163 PRK06452 sdhA succinate dehydr 98.7 1.7E-07 3.7E-12 100.7 15.7 145 84-229 4-200 (566)
164 TIGR02731 phytoene_desat phyto 98.7 6.6E-06 1.4E-10 86.4 27.2 35 87-122 1-35 (453)
165 PRK06069 sdhA succinate dehydr 98.7 1.7E-07 3.8E-12 101.0 15.4 146 84-230 4-203 (577)
166 COG1233 Phytoene dehydrogenase 98.7 9.3E-08 2E-12 100.9 13.0 54 172-225 224-279 (487)
167 KOG2844 Dimethylglycine dehydr 98.7 2.6E-07 5.6E-12 95.6 15.6 81 166-247 181-264 (856)
168 PRK07057 sdhA succinate dehydr 98.7 2E-07 4.4E-12 100.5 15.6 58 172-229 148-213 (591)
169 PRK09078 sdhA succinate dehydr 98.7 1.2E-07 2.7E-12 102.3 14.0 57 172-228 149-213 (598)
170 PLN00128 Succinate dehydrogena 98.7 1.3E-07 2.7E-12 102.6 13.7 59 171-229 186-252 (635)
171 TIGR01176 fum_red_Fp fumarate 98.7 2.1E-07 4.7E-12 100.0 15.2 144 85-229 3-197 (580)
172 PLN02576 protoporphyrinogen ox 98.7 2.5E-06 5.4E-11 90.7 23.3 38 84-122 11-49 (496)
173 COG1231 Monoamine oxidase [Ami 98.7 5.6E-06 1.2E-10 83.3 24.0 48 177-224 210-259 (450)
174 PRK06292 dihydrolipoamide dehy 98.7 4.5E-08 9.7E-13 102.9 9.9 45 84-129 2-46 (460)
175 PRK08958 sdhA succinate dehydr 98.7 1.3E-07 2.8E-12 101.9 13.5 59 171-229 142-208 (588)
176 PRK07803 sdhA succinate dehydr 98.7 1.7E-07 3.6E-12 101.8 14.4 37 84-121 7-43 (626)
177 TIGR03197 MnmC_Cterm tRNA U-34 98.7 1.5E-06 3.1E-11 89.2 20.3 60 168-228 131-191 (381)
178 PLN02487 zeta-carotene desatur 98.7 2.3E-05 4.9E-10 83.7 29.6 38 84-122 74-111 (569)
179 PRK07208 hypothetical protein; 98.7 9.7E-06 2.1E-10 85.8 26.9 39 83-122 2-40 (479)
180 PRK08275 putative oxidoreducta 98.7 2E-07 4.4E-12 100.0 14.1 146 83-229 7-202 (554)
181 PRK08205 sdhA succinate dehydr 98.7 3.4E-07 7.3E-12 98.8 15.8 59 171-229 139-208 (583)
182 PRK06912 acoL dihydrolipoamide 98.7 1.2E-07 2.5E-12 99.6 11.9 135 87-228 2-145 (458)
183 TIGR02732 zeta_caro_desat caro 98.7 7.7E-06 1.7E-10 86.1 25.5 35 87-122 1-35 (474)
184 TIGR01438 TGR thioredoxin and 98.7 1.2E-07 2.6E-12 99.9 11.8 137 85-229 2-157 (484)
185 PRK06134 putative FAD-binding 98.7 5.8E-07 1.3E-11 97.0 17.2 57 172-228 217-279 (581)
186 PLN02268 probable polyamine ox 98.7 1.1E-05 2.3E-10 84.3 26.3 42 185-226 209-251 (435)
187 PRK08071 L-aspartate oxidase; 98.7 2.3E-07 5E-12 98.4 13.5 142 85-229 3-192 (510)
188 PRK12845 3-ketosteroid-delta-1 98.7 7.2E-07 1.6E-11 95.5 17.3 47 75-123 6-52 (564)
189 PLN02815 L-aspartate oxidase 98.7 2.7E-07 5.9E-12 99.1 14.1 149 79-229 23-224 (594)
190 PRK12842 putative succinate de 98.7 6.5E-07 1.4E-11 96.6 16.9 39 82-121 6-44 (574)
191 PRK05329 anaerobic glycerol-3- 98.7 2E-06 4.4E-11 88.3 19.5 55 172-226 259-317 (422)
192 PRK08626 fumarate reductase fl 98.7 4.5E-07 9.7E-12 98.8 15.5 58 172-229 158-222 (657)
193 PRK06263 sdhA succinate dehydr 98.7 2.4E-07 5.3E-12 99.2 13.3 145 83-229 5-199 (543)
194 PRK14727 putative mercuric red 98.6 1.7E-07 3.6E-12 99.0 11.6 138 84-230 15-165 (479)
195 PTZ00363 rab-GDP dissociation 98.6 4.8E-07 1.1E-11 93.6 14.6 54 173-226 233-289 (443)
196 PRK12839 hypothetical protein; 98.6 1.2E-06 2.5E-11 94.2 17.6 42 79-121 2-43 (572)
197 PRK08641 sdhA succinate dehydr 98.6 5.6E-07 1.2E-11 97.1 14.8 37 84-121 2-38 (589)
198 TIGR01423 trypano_reduc trypan 98.6 2.9E-07 6.3E-12 96.9 12.1 34 84-118 2-36 (486)
199 PTZ00052 thioredoxin reductase 98.6 1.8E-07 3.9E-12 99.1 10.4 33 85-118 5-37 (499)
200 TIGR02734 crtI_fam phytoene de 98.6 5.3E-07 1.2E-11 95.9 14.1 58 172-229 219-278 (502)
201 PRK09077 L-aspartate oxidase; 98.6 1.1E-06 2.4E-11 93.9 16.0 148 82-231 5-211 (536)
202 PRK07846 mycothione reductase; 98.6 2.2E-07 4.8E-12 97.2 10.4 133 85-230 1-143 (451)
203 PTZ00318 NADH dehydrogenase-li 98.6 7.7E-07 1.7E-11 92.5 13.5 114 82-230 7-128 (424)
204 PF00070 Pyr_redox: Pyridine n 98.6 9.7E-07 2.1E-11 68.8 10.8 79 87-211 1-80 (80)
205 KOG2852 Possible oxidoreductas 98.6 4.7E-06 1E-10 78.3 16.9 143 85-228 10-209 (380)
206 PRK12844 3-ketosteroid-delta-1 98.5 7E-07 1.5E-11 95.8 13.2 37 84-121 5-41 (557)
207 PRK07843 3-ketosteroid-delta-1 98.5 2.3E-06 5E-11 91.9 17.0 36 85-121 7-42 (557)
208 PTZ00153 lipoamide dehydrogena 98.5 4.4E-07 9.6E-12 98.2 11.3 44 85-129 116-161 (659)
209 PF13434 K_oxygenase: L-lysine 98.5 3.7E-08 8E-13 98.7 2.9 142 85-229 2-161 (341)
210 PRK07395 L-aspartate oxidase; 98.5 5.8E-07 1.3E-11 96.1 12.1 145 82-228 6-198 (553)
211 TIGR03169 Nterm_to_SelD pyridi 98.5 7E-07 1.5E-11 90.9 12.1 109 87-231 1-111 (364)
212 PRK12837 3-ketosteroid-delta-1 98.5 2.5E-06 5.4E-11 90.8 16.3 37 84-122 6-42 (513)
213 TIGR01372 soxA sarcosine oxida 98.5 1.2E-06 2.7E-11 99.9 14.7 112 84-230 162-289 (985)
214 PRK12834 putative FAD-binding 98.5 1.8E-06 3.9E-11 92.7 15.2 35 84-119 3-37 (549)
215 PRK12835 3-ketosteroid-delta-1 98.5 9.3E-07 2E-11 95.2 12.1 37 84-121 10-46 (584)
216 PRK07512 L-aspartate oxidase; 98.5 5.7E-07 1.2E-11 95.5 10.3 58 171-228 135-198 (513)
217 PRK12779 putative bifunctional 98.5 4.6E-07 9.9E-12 102.1 9.8 97 85-226 306-403 (944)
218 PRK12831 putative oxidoreducta 98.5 4.4E-07 9.6E-12 95.1 8.9 100 83-226 138-239 (464)
219 PRK13800 putative oxidoreducta 98.5 3.5E-06 7.6E-11 95.4 16.3 39 81-120 9-47 (897)
220 PRK09564 coenzyme A disulfide 98.5 1.4E-06 2.9E-11 91.3 12.2 110 87-229 2-117 (444)
221 COG3573 Predicted oxidoreducta 98.5 2.3E-06 4.9E-11 81.9 12.3 39 82-121 2-40 (552)
222 TIGR02061 aprA adenosine phosp 98.4 4.9E-06 1.1E-10 89.6 16.2 33 87-120 1-37 (614)
223 COG3634 AhpF Alkyl hydroperoxi 98.4 3.8E-07 8.3E-12 87.5 6.7 115 81-227 207-325 (520)
224 PTZ00306 NADH-dependent fumara 98.4 4E-06 8.6E-11 97.2 16.2 40 82-122 406-445 (1167)
225 TIGR02352 thiamin_ThiO glycine 98.4 8.7E-06 1.9E-10 81.7 16.8 61 167-228 132-194 (337)
226 PRK04965 NADH:flavorubredoxin 98.4 2.5E-06 5.5E-11 87.3 13.0 98 86-228 142-240 (377)
227 TIGR01811 sdhA_Bsu succinate d 98.4 1.7E-06 3.6E-11 93.6 12.1 31 88-119 1-31 (603)
228 TIGR03378 glycerol3P_GlpB glyc 98.4 6.2E-06 1.3E-10 83.9 15.2 58 171-228 262-324 (419)
229 TIGR03452 mycothione_red mycot 98.4 6.3E-07 1.4E-11 93.8 8.3 131 85-229 2-145 (452)
230 PF13450 NAD_binding_8: NAD(P) 98.4 3.1E-07 6.7E-12 69.1 4.3 31 90-121 1-31 (68)
231 KOG0404 Thioredoxin reductase 98.4 2.8E-06 6E-11 76.9 10.9 124 86-235 9-132 (322)
232 PRK12843 putative FAD-binding 98.4 3.5E-06 7.5E-11 90.9 13.9 57 172-228 221-283 (578)
233 PF06039 Mqo: Malate:quinone o 98.4 3.2E-06 6.9E-11 85.4 12.2 59 169-227 178-244 (488)
234 KOG3923 D-aspartate oxidase [A 98.4 1.5E-05 3.2E-10 75.5 15.7 139 169-346 148-291 (342)
235 PRK09853 putative selenate red 98.4 1.5E-06 3.3E-11 96.9 10.8 97 84-227 538-635 (1019)
236 PRK09754 phenylpropionate diox 98.4 4.1E-06 9E-11 86.3 13.1 108 85-228 3-113 (396)
237 PLN03000 amine oxidase 98.4 5.8E-05 1.2E-09 83.1 22.2 40 82-122 181-220 (881)
238 TIGR02485 CobZ_N-term precorri 98.4 5.9E-06 1.3E-10 86.1 14.2 58 171-228 122-184 (432)
239 PRK13512 coenzyme A disulfide 98.3 3.2E-06 6.9E-11 88.3 11.8 111 87-229 3-119 (438)
240 PF00732 GMC_oxred_N: GMC oxid 98.3 1.5E-06 3.3E-11 85.8 8.9 35 86-121 1-36 (296)
241 KOG2311 NAD/FAD-utilizing prot 98.3 1E-06 2.2E-11 87.9 7.3 141 82-225 25-184 (679)
242 PRK09754 phenylpropionate diox 98.3 5.2E-06 1.1E-10 85.5 12.9 96 86-227 145-241 (396)
243 COG0029 NadB Aspartate oxidase 98.3 3.8E-06 8.2E-11 85.1 10.8 143 87-231 9-200 (518)
244 TIGR03315 Se_ygfK putative sel 98.3 2.2E-06 4.7E-11 96.1 10.0 36 84-120 536-571 (1012)
245 PRK13977 myosin-cross-reactive 98.3 5.9E-06 1.3E-10 86.8 12.4 38 84-122 21-62 (576)
246 PRK04965 NADH:flavorubredoxin 98.3 6.7E-06 1.4E-10 84.1 12.6 108 86-229 3-113 (377)
247 TIGR01350 lipoamide_DH dihydro 98.3 8.8E-06 1.9E-10 85.6 13.2 98 86-229 171-271 (461)
248 PRK05249 soluble pyridine nucl 98.3 1.2E-05 2.5E-10 84.7 13.5 98 86-229 176-274 (461)
249 PRK06416 dihydrolipoamide dehy 98.2 1.4E-05 3E-10 84.2 13.0 98 86-229 173-274 (462)
250 PRK12778 putative bifunctional 98.2 4.3E-06 9.3E-11 93.1 9.6 98 84-226 430-528 (752)
251 COG1053 SdhA Succinate dehydro 98.2 6.8E-06 1.5E-10 87.4 10.5 147 82-230 3-205 (562)
252 KOG2665 Predicted FAD-dependen 98.2 9.4E-06 2E-10 77.2 9.4 147 81-227 44-257 (453)
253 PRK14989 nitrite reductase sub 98.2 1.1E-05 2.5E-10 90.1 11.7 110 86-231 4-117 (847)
254 PRK11749 dihydropyrimidine deh 98.2 5.3E-06 1.1E-10 87.1 8.3 97 84-226 139-236 (457)
255 PRK12775 putative trifunctiona 98.1 5.7E-06 1.2E-10 94.2 8.8 36 84-120 429-464 (1006)
256 TIGR02374 nitri_red_nirB nitri 98.1 1.6E-05 3.4E-10 88.8 12.1 108 88-230 1-111 (785)
257 PRK06116 glutathione reductase 98.1 2.7E-05 5.9E-10 81.6 13.1 98 86-229 168-267 (450)
258 TIGR01316 gltA glutamate synth 98.1 7.9E-06 1.7E-10 85.5 8.8 37 83-120 131-167 (449)
259 KOG0685 Flavin-containing amin 98.1 0.00014 3E-09 73.5 17.0 38 84-122 20-58 (498)
260 TIGR03377 glycerol3P_GlpA glyc 98.1 0.00034 7.4E-09 74.7 21.3 202 167-391 123-349 (516)
261 PRK07845 flavoprotein disulfid 98.1 3.5E-05 7.6E-10 81.1 13.5 98 86-229 178-276 (466)
262 TIGR01424 gluta_reduc_2 glutat 98.1 3.5E-05 7.5E-10 80.7 13.4 97 86-228 167-264 (446)
263 PRK07251 pyridine nucleotide-d 98.1 3.3E-05 7.1E-10 80.8 13.1 97 86-229 158-255 (438)
264 KOG1335 Dihydrolipoamide dehyd 98.1 1.2E-05 2.7E-10 78.4 8.7 128 84-226 38-184 (506)
265 PLN02507 glutathione reductase 98.1 4.8E-05 1E-09 80.6 13.3 98 86-229 204-302 (499)
266 COG4529 Uncharacterized protei 98.0 5.4E-05 1.2E-09 76.9 12.7 144 85-229 1-166 (474)
267 PLN02852 ferredoxin-NADP+ redu 98.0 1.3E-05 2.9E-10 83.7 8.5 37 84-120 25-62 (491)
268 PRK05976 dihydrolipoamide dehy 98.0 5E-05 1.1E-09 80.1 12.9 98 86-229 181-283 (472)
269 TIGR01421 gluta_reduc_1 glutat 98.0 5.5E-05 1.2E-09 79.2 12.9 98 86-229 167-267 (450)
270 PRK06370 mercuric reductase; V 98.0 6.2E-05 1.3E-09 79.3 13.4 98 86-229 172-273 (463)
271 TIGR03385 CoA_CoA_reduc CoA-di 98.0 5.1E-05 1.1E-09 79.0 12.6 96 86-228 138-234 (427)
272 COG1249 Lpd Pyruvate/2-oxoglut 98.0 6.8E-05 1.5E-09 77.7 13.2 99 86-230 174-275 (454)
273 KOG0029 Amine oxidase [Seconda 98.0 5.7E-06 1.2E-10 86.7 5.4 42 81-123 11-52 (501)
274 PRK07818 dihydrolipoamide dehy 98.0 6.1E-05 1.3E-09 79.3 13.3 98 86-229 173-275 (466)
275 PRK12810 gltD glutamate syntha 98.0 1.1E-05 2.4E-10 85.0 7.5 37 83-120 141-177 (471)
276 PRK07846 mycothione reductase; 98.0 5.1E-05 1.1E-09 79.5 12.4 97 86-229 167-264 (451)
277 TIGR02053 MerA mercuric reduct 98.0 6.3E-05 1.4E-09 79.2 13.2 98 86-229 167-268 (463)
278 PRK06912 acoL dihydrolipoamide 98.0 7.1E-05 1.5E-09 78.6 13.4 98 86-229 171-270 (458)
279 PRK06327 dihydrolipoamide dehy 98.0 7.4E-05 1.6E-09 78.9 13.1 98 86-229 184-286 (475)
280 TIGR01318 gltD_gamma_fam gluta 98.0 1.4E-05 3.1E-10 83.9 7.7 99 84-228 140-239 (467)
281 PRK06115 dihydrolipoamide dehy 98.0 9.1E-05 2E-09 78.0 13.2 98 86-229 175-278 (466)
282 PRK06567 putative bifunctional 98.0 3.4E-05 7.4E-10 85.4 10.1 37 83-120 381-417 (1028)
283 COG1252 Ndh NADH dehydrogenase 97.9 4.2E-05 9.1E-10 77.4 9.8 109 84-229 2-113 (405)
284 TIGR02374 nitri_red_nirB nitri 97.9 7.5E-05 1.6E-09 83.4 12.4 98 86-228 141-239 (785)
285 TIGR00031 UDP-GALP_mutase UDP- 97.9 1.2E-05 2.6E-10 81.4 5.2 37 85-122 1-37 (377)
286 KOG4716 Thioredoxin reductase 97.9 0.00022 4.9E-09 68.7 13.1 136 83-232 17-178 (503)
287 PRK13512 coenzyme A disulfide 97.9 0.00011 2.4E-09 76.7 12.3 93 86-228 149-242 (438)
288 PRK08010 pyridine nucleotide-d 97.9 0.00014 3E-09 76.1 13.1 97 86-229 159-256 (441)
289 PRK09564 coenzyme A disulfide 97.9 0.00013 2.8E-09 76.4 12.8 97 86-228 150-247 (444)
290 PRK12770 putative glutamate sy 97.9 4.2E-05 9.2E-10 77.5 8.6 35 85-120 18-52 (352)
291 TIGR03452 mycothione_red mycot 97.9 0.00016 3.5E-09 75.7 12.9 96 86-228 170-266 (452)
292 TIGR01317 GOGAT_sm_gam glutama 97.9 3.3E-05 7.1E-10 81.6 7.6 97 84-226 142-239 (485)
293 PRK12814 putative NADPH-depend 97.8 3.2E-05 7E-10 84.6 7.6 36 84-120 192-227 (652)
294 TIGR01423 trypano_reduc trypan 97.8 0.00016 3.5E-09 76.2 12.7 99 86-229 188-290 (486)
295 PRK14727 putative mercuric red 97.8 0.00022 4.7E-09 75.4 13.6 96 86-229 189-285 (479)
296 PRK14694 putative mercuric red 97.8 0.00022 4.7E-09 75.2 13.5 96 86-229 179-275 (468)
297 PTZ00052 thioredoxin reductase 97.8 0.0002 4.2E-09 76.1 13.1 96 87-229 184-280 (499)
298 TIGR02733 desat_CrtD C-3',4' d 97.8 1.8E-05 4E-10 83.9 5.1 55 172-226 232-293 (492)
299 KOG0405 Pyridine nucleotide-di 97.8 0.00014 3E-09 70.4 10.2 142 82-231 17-169 (478)
300 PRK14989 nitrite reductase sub 97.8 0.00018 3.9E-09 80.6 12.7 97 87-228 147-246 (847)
301 TIGR03169 Nterm_to_SelD pyridi 97.8 0.001 2.2E-08 67.6 17.4 91 87-227 147-243 (364)
302 COG0446 HcaD Uncharacterized N 97.8 0.00016 3.5E-09 74.5 11.6 98 86-228 137-238 (415)
303 COG3349 Uncharacterized conser 97.8 2.2E-05 4.9E-10 80.4 4.7 35 87-122 2-36 (485)
304 TIGR01438 TGR thioredoxin and 97.8 0.00029 6.2E-09 74.5 12.9 96 87-229 182-281 (484)
305 COG2907 Predicted NAD/FAD-bind 97.8 4.2E-05 9.1E-10 74.0 5.8 40 187-226 232-272 (447)
306 PRK13748 putative mercuric red 97.7 0.00032 6.8E-09 75.8 13.2 96 86-229 271-367 (561)
307 PRK06467 dihydrolipoamide dehy 97.7 0.0003 6.5E-09 74.2 12.7 97 86-229 175-276 (471)
308 COG1206 Gid NAD(FAD)-utilizing 97.7 7.2E-05 1.6E-09 71.8 6.9 111 85-198 3-127 (439)
309 KOG2960 Protein involved in th 97.7 4.9E-05 1.1E-09 68.4 5.2 133 84-229 75-236 (328)
310 PRK12771 putative glutamate sy 97.7 5.4E-05 1.2E-09 81.7 6.6 36 84-120 136-171 (564)
311 PTZ00058 glutathione reductase 97.7 0.00041 8.9E-09 74.3 13.1 98 86-229 238-338 (561)
312 PRK13984 putative oxidoreducta 97.7 7.7E-05 1.7E-09 81.2 6.8 36 84-120 282-317 (604)
313 COG1252 Ndh NADH dehydrogenase 97.7 0.00021 4.5E-09 72.5 9.3 94 84-227 154-262 (405)
314 PTZ00318 NADH dehydrogenase-li 97.7 0.00037 8E-09 72.5 11.5 92 87-227 175-280 (424)
315 COG0562 Glf UDP-galactopyranos 97.6 6.1E-05 1.3E-09 72.2 5.0 37 85-122 1-37 (374)
316 KOG2404 Fumarate reductase, fl 97.6 0.00033 7.2E-09 67.1 9.8 34 87-121 11-44 (477)
317 COG3075 GlpB Anaerobic glycero 97.6 6.4E-05 1.4E-09 72.2 4.5 35 84-119 1-35 (421)
318 PRK12769 putative oxidoreducta 97.6 8.4E-05 1.8E-09 81.6 6.1 36 84-120 326-361 (654)
319 TIGR02462 pyranose_ox pyranose 97.6 6.3E-05 1.4E-09 79.6 4.8 36 86-122 1-36 (544)
320 PRK06292 dihydrolipoamide dehy 97.6 0.00091 2E-08 70.4 13.4 97 86-229 170-270 (460)
321 PRK02106 choline dehydrogenase 97.6 7.8E-05 1.7E-09 80.4 5.0 37 84-120 4-40 (560)
322 PLN02546 glutathione reductase 97.5 0.00083 1.8E-08 71.9 12.6 98 86-229 253-352 (558)
323 COG1148 HdrA Heterodisulfide r 97.5 8.7E-05 1.9E-09 74.8 4.8 38 84-122 123-160 (622)
324 COG3486 IucD Lysine/ornithine 97.5 0.00051 1.1E-08 68.2 10.0 146 83-231 3-161 (436)
325 PLN02568 polyamine oxidase 97.5 0.00011 2.3E-09 78.5 5.6 50 174-225 244-294 (539)
326 PTZ00188 adrenodoxin reductase 97.5 0.00015 3.2E-09 75.1 6.2 37 85-122 39-76 (506)
327 KOG4254 Phytoene desaturase [C 97.5 0.00036 7.9E-09 69.9 8.6 59 173-231 265-325 (561)
328 PLN02676 polyamine oxidase 97.5 0.00012 2.6E-09 77.3 5.7 41 187-227 245-286 (487)
329 TIGR01292 TRX_reduct thioredox 97.5 0.00096 2.1E-08 65.6 11.7 90 86-227 142-238 (300)
330 PLN02529 lysine-specific histo 97.5 0.00015 3.2E-09 79.4 5.7 38 83-121 158-195 (738)
331 COG0493 GltD NADPH-dependent g 97.4 0.00019 4.1E-09 74.5 5.3 47 82-129 120-166 (457)
332 COG2303 BetA Choline dehydroge 97.4 0.00019 4E-09 76.8 4.9 38 82-120 4-41 (542)
333 PLN02328 lysine-specific histo 97.4 0.00025 5.4E-09 78.1 5.8 39 83-122 236-274 (808)
334 PTZ00153 lipoamide dehydrogena 97.3 0.0019 4.2E-08 70.3 12.5 98 86-229 313-429 (659)
335 TIGR03140 AhpF alkyl hydropero 97.3 0.0013 2.9E-08 70.1 10.5 90 86-227 353-450 (515)
336 PRK12809 putative oxidoreducta 97.3 0.00037 7.9E-09 76.3 6.3 36 84-120 309-344 (639)
337 PLN02785 Protein HOTHEAD 97.3 0.00041 8.9E-09 74.7 6.1 36 83-120 53-88 (587)
338 PRK10262 thioredoxin reductase 97.3 0.0021 4.5E-08 64.2 10.8 94 86-227 147-248 (321)
339 TIGR01810 betA choline dehydro 97.2 0.00029 6.4E-09 75.5 4.2 33 87-120 1-34 (532)
340 KOG3851 Sulfide:quinone oxidor 97.2 0.0021 4.5E-08 61.8 9.1 38 82-119 36-74 (446)
341 TIGR03862 flavo_PP4765 unchara 97.2 0.0038 8.3E-08 63.2 11.7 56 170-227 84-141 (376)
342 KOG1336 Monodehydroascorbate/f 97.1 0.0038 8.3E-08 63.4 10.8 99 85-228 213-314 (478)
343 KOG1276 Protoporphyrinogen oxi 97.1 0.00052 1.1E-08 68.5 4.4 37 84-121 10-48 (491)
344 PRK11749 dihydropyrimidine deh 97.1 0.0033 7.2E-08 66.0 10.6 93 85-227 273-387 (457)
345 TIGR01316 gltA glutamate synth 97.1 0.005 1.1E-07 64.5 11.6 33 86-119 273-305 (449)
346 PF13434 K_oxygenase: L-lysine 96.9 0.00084 1.8E-08 67.5 4.4 131 82-226 187-340 (341)
347 PLN02976 amine oxidase 96.9 0.0013 2.8E-08 75.5 5.7 37 84-121 692-728 (1713)
348 COG1251 NirB NAD(P)H-nitrite r 96.9 0.0015 3.2E-08 69.6 5.8 96 88-228 148-244 (793)
349 PRK15317 alkyl hydroperoxide r 96.8 0.0056 1.2E-07 65.4 10.0 90 86-227 352-449 (517)
350 PRK12770 putative glutamate sy 96.8 0.0083 1.8E-07 60.7 10.8 32 86-118 173-205 (352)
351 PRK12831 putative oxidoreducta 96.8 0.011 2.5E-07 62.1 11.5 33 86-119 282-314 (464)
352 KOG0399 Glutamate synthase [Am 96.8 0.0015 3.2E-08 72.0 4.6 50 79-129 1779-1828(2142)
353 KOG1238 Glucose dehydrogenase/ 96.7 0.0014 3.1E-08 69.0 4.4 40 82-121 54-93 (623)
354 TIGR01372 soxA sarcosine oxida 96.5 0.011 2.3E-07 68.1 10.1 89 86-228 318-412 (985)
355 KOG1800 Ferredoxin/adrenodoxin 96.4 0.0034 7.4E-08 61.8 4.3 45 85-129 20-65 (468)
356 KOG1336 Monodehydroascorbate/f 96.4 0.018 3.9E-07 58.6 9.3 106 85-228 74-182 (478)
357 KOG1346 Programmed cell death 96.3 0.011 2.3E-07 59.0 7.0 101 86-231 348-455 (659)
358 PRK12810 gltD glutamate syntha 96.3 0.031 6.7E-07 59.0 11.2 102 86-227 282-400 (471)
359 KOG2755 Oxidoreductase [Genera 96.2 0.0087 1.9E-07 56.1 5.8 32 88-119 2-34 (334)
360 TIGR03143 AhpF_homolog putativ 96.2 0.037 8.1E-07 59.6 11.5 33 86-119 144-176 (555)
361 PF01593 Amino_oxidase: Flavin 96.2 0.15 3.2E-06 52.4 15.5 49 181-229 218-267 (450)
362 PRK12778 putative bifunctional 96.1 0.034 7.4E-07 62.2 11.0 33 86-119 571-604 (752)
363 KOG1335 Dihydrolipoamide dehyd 96.0 0.03 6.4E-07 55.4 8.4 99 86-230 212-317 (506)
364 TIGR03467 HpnE squalene-associ 96.0 0.62 1.3E-05 48.0 19.0 56 172-227 197-254 (419)
365 PRK12814 putative NADPH-depend 95.8 0.07 1.5E-06 58.6 11.3 33 86-119 324-357 (652)
366 PF06100 Strep_67kDa_ant: Stre 95.6 0.26 5.5E-06 51.1 13.7 36 86-121 3-41 (500)
367 TIGR01318 gltD_gamma_fam gluta 95.6 0.093 2E-06 55.3 11.1 34 85-119 282-316 (467)
368 PRK12779 putative bifunctional 95.5 0.084 1.8E-06 60.2 10.9 33 86-119 448-480 (944)
369 PF00996 GDI: GDP dissociation 95.4 0.018 3.8E-07 59.5 4.4 37 84-121 3-39 (438)
370 PLN02172 flavin-containing mon 95.3 0.035 7.6E-07 58.2 6.6 33 86-119 205-237 (461)
371 KOG2495 NADH-dehydrogenase (ub 95.2 0.075 1.6E-06 53.5 7.9 52 174-227 275-329 (491)
372 PRK12769 putative oxidoreducta 95.2 0.15 3.3E-06 56.1 11.3 33 86-119 469-502 (654)
373 PF02737 3HCDH_N: 3-hydroxyacy 95.1 0.023 4.9E-07 51.6 3.9 32 87-119 1-32 (180)
374 PRK09853 putative selenate red 95.1 0.14 3E-06 58.2 10.7 33 86-119 669-703 (1019)
375 PF01210 NAD_Gly3P_dh_N: NAD-d 95.0 0.031 6.8E-07 49.5 4.3 32 87-119 1-32 (157)
376 COG0569 TrkA K+ transport syst 94.7 0.037 8.1E-07 52.1 4.2 33 87-120 2-34 (225)
377 PRK02705 murD UDP-N-acetylmura 94.6 0.039 8.4E-07 58.1 4.6 33 87-120 2-34 (459)
378 PRK01438 murD UDP-N-acetylmura 94.4 0.056 1.2E-06 57.2 5.4 33 86-119 17-49 (480)
379 PRK05675 sdhA succinate dehydr 94.4 0.37 7.9E-06 52.2 11.7 59 171-229 125-191 (570)
380 PF00743 FMO-like: Flavin-bind 94.4 0.12 2.7E-06 55.1 7.8 40 86-126 184-223 (531)
381 TIGR03315 Se_ygfK putative sel 94.4 0.31 6.8E-06 55.6 11.3 34 85-119 666-701 (1012)
382 KOG2495 NADH-dehydrogenase (ub 94.3 0.36 7.7E-06 48.8 10.2 116 81-231 51-174 (491)
383 COG0446 HcaD Uncharacterized N 94.1 0.29 6.4E-06 50.1 9.8 106 88-229 1-108 (415)
384 PF03721 UDPG_MGDP_dh_N: UDP-g 94.1 0.044 9.5E-07 49.9 3.2 32 87-119 2-33 (185)
385 PF02558 ApbA: Ketopantoate re 94.0 0.076 1.7E-06 46.4 4.5 30 88-118 1-30 (151)
386 PRK06129 3-hydroxyacyl-CoA deh 93.8 0.065 1.4E-06 53.2 4.1 32 87-119 4-35 (308)
387 COG1251 NirB NAD(P)H-nitrite r 93.7 0.62 1.3E-05 50.4 11.1 112 85-231 3-117 (793)
388 PLN02852 ferredoxin-NADP+ redu 93.6 0.52 1.1E-05 49.7 10.6 22 86-108 167-188 (491)
389 PF13478 XdhC_C: XdhC Rossmann 93.4 0.081 1.8E-06 45.5 3.5 32 88-120 1-32 (136)
390 KOG1346 Programmed cell death 93.3 0.34 7.3E-06 48.7 7.9 132 82-229 175-313 (659)
391 PRK14106 murD UDP-N-acetylmura 93.1 0.12 2.7E-06 54.1 5.1 34 85-119 5-38 (450)
392 PLN02976 amine oxidase 93.1 24 0.00052 42.1 24.8 38 187-224 946-994 (1713)
393 TIGR03385 CoA_CoA_reduc CoA-di 93.1 0.43 9.3E-06 49.6 9.0 47 183-229 55-105 (427)
394 PRK08293 3-hydroxybutyryl-CoA 93.0 0.13 2.8E-06 50.4 4.7 33 86-119 4-36 (287)
395 PRK07066 3-hydroxybutyryl-CoA 92.8 0.13 2.7E-06 51.2 4.2 33 86-119 8-40 (321)
396 PRK12809 putative oxidoreducta 92.7 0.76 1.6E-05 50.5 10.7 34 85-119 451-485 (639)
397 PRK06249 2-dehydropantoate 2-r 92.6 0.17 3.6E-06 50.3 5.0 33 86-119 6-38 (313)
398 PRK06719 precorrin-2 dehydroge 92.6 0.18 4E-06 44.5 4.6 31 85-116 13-43 (157)
399 PRK12775 putative trifunctiona 92.5 0.8 1.7E-05 52.9 10.9 33 85-118 571-604 (1006)
400 PF02254 TrkA_N: TrkA-N domain 92.5 0.15 3.2E-06 42.3 3.9 31 88-119 1-31 (116)
401 PRK09260 3-hydroxybutyryl-CoA 92.5 0.13 2.9E-06 50.3 4.1 32 87-119 3-34 (288)
402 PRK07819 3-hydroxybutyryl-CoA 92.4 0.16 3.5E-06 49.7 4.5 33 87-120 7-39 (286)
403 PRK05708 2-dehydropantoate 2-r 92.4 0.17 3.7E-06 50.1 4.7 33 86-119 3-35 (305)
404 TIGR01470 cysG_Nterm siroheme 92.3 0.21 4.5E-06 46.4 4.8 32 86-118 10-41 (205)
405 PRK13984 putative oxidoreducta 92.3 0.8 1.7E-05 50.0 10.1 35 351-391 568-602 (604)
406 PF13738 Pyr_redox_3: Pyridine 92.2 0.17 3.8E-06 46.4 4.3 35 84-119 166-200 (203)
407 PF13241 NAD_binding_7: Putati 92.2 0.16 3.5E-06 41.3 3.5 33 85-118 7-39 (103)
408 PF01593 Amino_oxidase: Flavin 92.1 0.13 2.9E-06 52.7 3.7 28 95-123 1-28 (450)
409 PRK07530 3-hydroxybutyryl-CoA 92.0 0.19 4.1E-06 49.4 4.5 33 86-119 5-37 (292)
410 PRK06035 3-hydroxyacyl-CoA deh 91.9 0.17 3.8E-06 49.6 4.1 33 86-119 4-36 (291)
411 PRK06522 2-dehydropantoate 2-r 91.8 0.19 4.1E-06 49.5 4.3 31 87-118 2-32 (304)
412 TIGR00518 alaDH alanine dehydr 91.8 0.19 4.1E-06 51.2 4.2 35 84-119 166-200 (370)
413 PRK05808 3-hydroxybutyryl-CoA 91.8 0.21 4.5E-06 48.8 4.5 33 86-119 4-36 (282)
414 COG0492 TrxB Thioredoxin reduc 91.8 1.3 2.9E-05 43.6 10.1 90 86-227 144-238 (305)
415 PRK09424 pntA NAD(P) transhydr 91.6 0.18 4E-06 53.1 4.1 35 84-119 164-198 (509)
416 PRK12921 2-dehydropantoate 2-r 91.6 0.22 4.8E-06 49.1 4.4 30 87-117 2-31 (305)
417 PF01262 AlaDh_PNT_C: Alanine 91.4 0.27 5.8E-06 44.0 4.4 34 84-118 19-52 (168)
418 PRK04148 hypothetical protein; 91.4 0.2 4.3E-06 42.7 3.3 33 86-120 18-50 (134)
419 PRK11064 wecC UDP-N-acetyl-D-m 91.3 0.22 4.7E-06 51.6 4.2 34 86-120 4-37 (415)
420 TIGR01317 GOGAT_sm_gam glutama 91.3 1.6 3.6E-05 46.2 10.9 33 86-119 284-317 (485)
421 cd00401 AdoHcyase S-adenosyl-L 91.3 0.24 5.3E-06 50.8 4.4 34 85-119 202-235 (413)
422 cd05292 LDH_2 A subgroup of L- 91.2 0.27 5.9E-06 48.7 4.6 32 87-119 2-35 (308)
423 PRK06718 precorrin-2 dehydroge 91.2 0.31 6.6E-06 45.1 4.6 32 85-117 10-41 (202)
424 TIGR02354 thiF_fam2 thiamine b 91.1 0.33 7.1E-06 44.8 4.7 34 84-118 20-54 (200)
425 COG5044 MRS6 RAB proteins gera 90.4 0.4 8.7E-06 47.5 4.8 36 85-121 6-41 (434)
426 TIGR01763 MalateDH_bact malate 90.2 0.43 9.2E-06 47.2 4.9 32 86-118 2-34 (305)
427 PRK08229 2-dehydropantoate 2-r 90.1 0.39 8.5E-06 48.3 4.7 32 86-118 3-34 (341)
428 PRK12771 putative glutamate sy 89.9 3 6.4E-05 45.2 11.6 38 351-393 409-446 (564)
429 COG3486 IucD Lysine/ornithine 89.9 0.57 1.2E-05 47.2 5.5 46 185-230 291-343 (436)
430 PRK15116 sulfur acceptor prote 89.8 0.48 1E-05 45.7 4.8 34 84-118 29-63 (268)
431 TIGR02964 xanthine_xdhC xanthi 89.8 0.48 1E-05 45.2 4.8 36 84-120 99-134 (246)
432 TIGR03026 NDP-sugDHase nucleot 89.8 0.31 6.7E-06 50.4 3.7 33 87-120 2-34 (411)
433 PF01488 Shikimate_DH: Shikima 89.7 0.61 1.3E-05 40.0 5.0 34 84-118 11-45 (135)
434 PRK06130 3-hydroxybutyryl-CoA 89.7 0.45 9.7E-06 47.2 4.7 33 86-119 5-37 (311)
435 PLN02712 arogenate dehydrogena 89.6 1.2 2.7E-05 48.8 8.4 43 75-118 42-84 (667)
436 KOG4405 GDP dissociation inhib 89.4 0.35 7.6E-06 48.4 3.5 36 84-120 7-42 (547)
437 PRK00094 gpsA NAD(P)H-dependen 89.4 0.43 9.2E-06 47.5 4.3 33 86-119 2-34 (325)
438 PLN02545 3-hydroxybutyryl-CoA 89.3 0.41 9E-06 47.1 4.1 32 87-119 6-37 (295)
439 PF03446 NAD_binding_2: NAD bi 89.3 0.43 9.4E-06 42.4 3.9 33 86-119 2-34 (163)
440 PRK14620 NAD(P)H-dependent gly 89.2 0.49 1.1E-05 47.3 4.5 32 87-119 2-33 (326)
441 TIGR00936 ahcY adenosylhomocys 89.0 0.5 1.1E-05 48.4 4.5 34 85-119 195-228 (406)
442 PRK14618 NAD(P)H-dependent gly 89.0 0.51 1.1E-05 47.2 4.5 33 86-119 5-37 (328)
443 PF00899 ThiF: ThiF family; I 89.0 0.51 1.1E-05 40.4 4.0 33 85-118 2-35 (135)
444 COG1004 Ugd Predicted UDP-gluc 89.0 0.46 1E-05 47.7 4.0 33 86-119 1-33 (414)
445 PRK07417 arogenate dehydrogena 88.8 0.43 9.4E-06 46.5 3.8 32 87-119 2-33 (279)
446 PRK12475 thiamine/molybdopteri 88.7 0.61 1.3E-05 46.8 4.8 35 84-119 23-58 (338)
447 COG0686 Ald Alanine dehydrogen 88.1 0.45 9.7E-06 46.1 3.2 34 84-118 167-200 (371)
448 TIGR00561 pntA NAD(P) transhyd 88.1 0.54 1.2E-05 49.5 4.1 35 84-119 163-197 (511)
449 PTZ00082 L-lactate dehydrogena 88.0 0.9 2E-05 45.3 5.5 34 86-120 7-41 (321)
450 PRK06223 malate dehydrogenase; 88.0 0.73 1.6E-05 45.6 4.9 33 86-119 3-36 (307)
451 PF00056 Ldh_1_N: lactate/mala 88.0 0.86 1.9E-05 39.4 4.7 32 87-119 2-36 (141)
452 TIGR02279 PaaC-3OHAcCoADH 3-hy 88.0 0.54 1.2E-05 49.9 4.1 33 87-120 7-39 (503)
453 COG1063 Tdh Threonine dehydrog 87.9 0.61 1.3E-05 47.1 4.2 32 87-119 171-203 (350)
454 PLN02353 probable UDP-glucose 87.8 0.64 1.4E-05 48.8 4.4 34 86-120 2-37 (473)
455 PRK12549 shikimate 5-dehydroge 87.7 0.72 1.6E-05 45.1 4.5 32 86-118 128-160 (284)
456 PRK14619 NAD(P)H-dependent gly 87.7 0.85 1.8E-05 45.2 5.1 33 86-119 5-37 (308)
457 PRK10669 putative cation:proto 87.6 0.61 1.3E-05 50.4 4.3 36 83-119 415-450 (558)
458 cd05291 HicDH_like L-2-hydroxy 87.6 0.74 1.6E-05 45.6 4.6 33 87-120 2-36 (306)
459 cd01339 LDH-like_MDH L-lactate 87.6 0.65 1.4E-05 45.8 4.2 31 88-119 1-32 (300)
460 PRK02472 murD UDP-N-acetylmura 87.5 0.65 1.4E-05 48.6 4.4 32 87-119 7-38 (447)
461 PRK03369 murD UDP-N-acetylmura 87.5 0.64 1.4E-05 49.3 4.3 31 87-118 14-44 (488)
462 PRK00066 ldh L-lactate dehydro 87.4 0.97 2.1E-05 44.9 5.3 35 84-119 5-41 (315)
463 TIGR02356 adenyl_thiF thiazole 87.4 0.92 2E-05 41.9 4.8 36 82-118 18-54 (202)
464 cd01487 E1_ThiF_like E1_ThiF_l 87.4 0.86 1.9E-05 41.0 4.5 31 87-118 1-32 (174)
465 PF00670 AdoHcyase_NAD: S-aden 87.4 0.69 1.5E-05 40.8 3.7 33 86-119 24-56 (162)
466 PRK08268 3-hydroxy-acyl-CoA de 87.2 0.63 1.4E-05 49.5 4.1 34 86-120 8-41 (507)
467 PRK05476 S-adenosyl-L-homocyst 87.2 0.77 1.7E-05 47.3 4.5 34 85-119 212-245 (425)
468 PRK07502 cyclohexadienyl dehyd 87.2 0.78 1.7E-05 45.4 4.5 33 86-119 7-41 (307)
469 TIGR02355 moeB molybdopterin s 87.1 0.9 1.9E-05 43.2 4.7 34 84-118 23-57 (240)
470 PRK11730 fadB multifunctional 87.0 0.61 1.3E-05 51.8 4.0 35 85-120 313-347 (715)
471 PRK07531 bifunctional 3-hydrox 87.0 0.69 1.5E-05 49.1 4.2 32 87-119 6-37 (495)
472 PLN02676 polyamine oxidase 86.9 1.5 3.2E-05 46.6 6.6 39 83-122 24-63 (487)
473 PRK08306 dipicolinate synthase 86.9 0.77 1.7E-05 45.2 4.2 34 85-119 152-185 (296)
474 PRK04308 murD UDP-N-acetylmura 86.9 0.84 1.8E-05 47.8 4.8 34 86-120 6-39 (445)
475 PRK07688 thiamine/molybdopteri 86.8 0.93 2E-05 45.5 4.8 34 84-118 23-57 (339)
476 TIGR02437 FadB fatty oxidation 86.6 0.67 1.5E-05 51.4 4.0 36 84-120 312-347 (714)
477 PRK01710 murD UDP-N-acetylmura 86.5 0.85 1.8E-05 48.0 4.5 33 87-120 16-48 (458)
478 PLN02328 lysine-specific histo 86.4 29 0.00063 39.1 16.5 37 188-225 448-485 (808)
479 KOG2304 3-hydroxyacyl-CoA dehy 86.4 0.68 1.5E-05 42.7 3.2 35 84-119 10-44 (298)
480 PRK05690 molybdopterin biosynt 86.3 1.1 2.3E-05 42.9 4.7 34 84-118 31-65 (245)
481 PF10727 Rossmann-like: Rossma 86.3 0.45 9.9E-06 40.3 1.9 35 82-117 7-41 (127)
482 cd01483 E1_enzyme_family Super 86.2 1.1 2.5E-05 38.6 4.6 31 87-118 1-32 (143)
483 PRK09496 trkA potassium transp 86.2 0.81 1.8E-05 47.9 4.2 33 87-120 2-34 (453)
484 TIGR01915 npdG NADPH-dependent 86.2 0.91 2E-05 42.5 4.2 32 87-119 2-34 (219)
485 cd01075 NAD_bind_Leu_Phe_Val_D 86.1 1.5 3.3E-05 40.4 5.5 33 85-118 28-60 (200)
486 COG1748 LYS9 Saccharopine dehy 86.0 1 2.2E-05 45.7 4.5 33 86-119 2-35 (389)
487 KOG1439 RAB proteins geranylge 85.8 0.42 9.1E-06 47.9 1.7 36 85-121 4-39 (440)
488 PLN02494 adenosylhomocysteinas 85.8 1 2.2E-05 46.8 4.6 34 85-119 254-287 (477)
489 TIGR02441 fa_ox_alpha_mit fatt 85.8 0.79 1.7E-05 51.1 4.1 36 84-120 334-369 (737)
490 PRK08644 thiamine biosynthesis 85.8 1.2 2.7E-05 41.4 4.8 35 83-118 26-61 (212)
491 TIGR01505 tartro_sem_red 2-hyd 85.7 0.85 1.8E-05 44.7 3.9 32 87-119 1-32 (291)
492 cd05311 NAD_bind_2_malic_enz N 85.6 1.2 2.6E-05 42.0 4.6 33 86-119 26-61 (226)
493 TIGR01816 sdhA_forward succina 85.4 3.6 7.7E-05 44.5 8.7 59 171-229 118-183 (565)
494 cd05293 LDH_1 A subgroup of L- 85.3 1.4 3E-05 43.7 5.1 34 85-119 3-38 (312)
495 PRK08328 hypothetical protein; 85.3 1.3 2.8E-05 41.9 4.7 34 84-118 26-60 (231)
496 PLN02529 lysine-specific histo 85.2 62 0.0014 36.2 18.2 38 186-224 366-404 (738)
497 TIGR02853 spore_dpaA dipicolin 85.1 1 2.3E-05 44.0 4.1 34 85-119 151-184 (287)
498 PRK00683 murD UDP-N-acetylmura 84.9 1.1 2.4E-05 46.4 4.5 33 87-120 5-37 (418)
499 KOG0405 Pyridine nucleotide-di 84.8 3 6.5E-05 41.2 6.9 99 85-229 189-289 (478)
500 cd00757 ThiF_MoeB_HesA_family 84.7 1.4 3.1E-05 41.5 4.7 34 84-118 20-54 (228)
No 1
>PLN02463 lycopene beta cyclase
Probab=100.00 E-value=3e-73 Score=584.45 Aligned_cols=444 Identities=66% Similarity=1.146 Sum_probs=408.8
Q ss_pred ccccCCCCCCCccCCCCCCCCCCCCCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcC
Q 010693 59 FLELTPESVPEFLDFDLPWFHPSDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIG 138 (503)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~ 138 (503)
+++++|+++++++++++|++++++...|||+||||||||+++|..|++ +|++|+|||+.+...+++++|.|.+.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIVGaGpAGLalA~~La~-~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lg 80 (447)
T PLN02463 2 LLELVPETKKENLDFELPRFDPSKSRVVDLVVVGGGPAGLAVAQQVSE-AGLSVCCIDPSPLSIWPNNYGVWVDEFEALG 80 (447)
T ss_pred ccccCCCCccccccccccCCCCccccCceEEEECCCHHHHHHHHHHHH-CCCeEEEeccCccchhccccchHHHHHHHCC
Confidence 678999999999999999999999999999999999999999999999 9999999999888788899999999999999
Q ss_pred chhhhhhccCceEEEecCCcccccCCCccccCHHHHHHHHHHHHHhCCcEEEEeEEEEEEEeCCEEEEEeCCCcEEEece
Q 010693 139 LVDCLDKTWPMTCVFINDHKTKYLDRPYGRVSRNILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDDGNEIKASL 218 (503)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g~~i~a~~ 218 (503)
+.+++...|....+++++........+|+.|+|..|.+.|.+++.+.|++++.++|++++.+++.+.|++++|.+++|++
T Consensus 81 l~~~l~~~w~~~~v~~~~~~~~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~l 160 (447)
T PLN02463 81 LLDCLDTTWPGAVVYIDDGKKKDLDRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASL 160 (447)
T ss_pred cHHHHHhhCCCcEEEEeCCCCccccCcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCE
Confidence 99999999999988887665555677898899999999999999999999988899999998888999999998999999
Q ss_pred EEecCCCCcccccccCCCCCccceeEEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCCeEE
Q 010693 219 IVDASGFASSFVEYDKPRNHGYQIAHGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNLVF 298 (503)
Q Consensus 219 vI~A~G~~s~vr~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~~ 298 (503)
||+|+|.+|++.+...+...++|.++|+..+++.++++.+.+++|||+..|.....+....+...++|+|++|+++++++
T Consensus 161 VI~AdG~~s~l~~~~~~~~~g~Q~a~Gi~~ev~~~p~d~~~~vlMD~r~~~~~~~~~~~~~~~~~p~FlY~~P~~~~~~~ 240 (447)
T PLN02463 161 VLDATGFSRCLVQYDKPFNPGYQVAYGILAEVDSHPFDLDKMLFMDWRDSHLGNNPELRARNSKLPTFLYAMPFSSNRIF 240 (447)
T ss_pred EEECcCCCcCccCCCCCCCccceeeeeEEeecCCCCcccccchhhhcChhhccccchhhhccCCCCceEEEEecCCCeEE
Confidence 99999999998877666667899999999999888899999999999987754333333344445789999999999999
Q ss_pred EecccccCCCCCCHHHHHHHHHHHHhhcCCccceEeecceecccCCCCCCCCCCCEEEeccCCCCcCCcccHHHHHHHHh
Q 010693 299 LEETSLVSRPVLSYKEVKRRMAARLRHMGIRVKRVIEDEKCLIPMGGPLPVIPQSVMAIGSTSGLVHPSTGYMVARTMAL 378 (503)
Q Consensus 299 v~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~p~~~~~~~~~~~v~liGDAa~~~~P~~G~G~~~al~~ 378 (503)
++.|++..++..+.+.+++++.+++.++++...++.+.+.+.+||+++.+...++++++||||++++|++|+|+..++..
T Consensus 241 vEeT~l~s~~~~~~~~lk~~L~~~l~~~Gi~~~~i~~~E~~~IPmg~~~~~~~~~~~~~G~aag~v~p~tG~~i~~~~~~ 320 (447)
T PLN02463 241 LEETSLVARPGLPMDDIQERMVARLRHLGIKVKSVEEDEKCVIPMGGPLPVIPQRVLGIGGTAGMVHPSTGYMVARTLAA 320 (447)
T ss_pred EEeeeeecCCCCCHHHHHHHHHHHHHHCCCCcceeeeeeeeEeeCCCCCCCCCCCEEEecchhcCcCCCccccHHHHHHH
Confidence 99999988888889999999999999889888889999999999999888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCC--CCCchhhHHHHhhcCcHHHHHHHHHHHHhHHHHhCCChhhHHHHHHHHccCCccccccccC
Q 010693 379 APALADAIAECLGSTRM--IRGRPLHQKVWNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAFFDLNPYYWHGFLS 456 (503)
Q Consensus 379 a~~lA~~l~~~l~~~~~--~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~~~l~~~~~~~fl~ 456 (503)
|..+|++|+++++.+.. ....+..++.|+.+|+.++++++.|++|||+.|++++.++++.||++||++|+++|.+||+
T Consensus 321 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~lw~~~~~~~~~~~~fg~~~l~~~~~~~~~~ff~~ff~l~~~~~~gfl~ 400 (447)
T PLN02463 321 APIVADAIVEYLGSSRSNSFRGDELSAEVWNDLWPIERRRQREFFCFGMDILLKLDLDGTRRFFDAFFDLEPHYWHGFLS 400 (447)
T ss_pred HHHHHHHHHHHHhcCCCcCCChHHHHHHHHHHhCCHhHhHhHHHHHhHHHHHHcCChHHHHHHHHHHHcCCHHHcccccc
Confidence 99999999999987765 5567788999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCcchhhcceeccCccHHHHHHhhhhccC
Q 010693 457 SRLSLAELAGLSLSLFGHASNSSRLDIVTKCPLPLVKMMGNLALETI 503 (503)
Q Consensus 457 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (503)
+++++.+++.++++||.+|||.+|+.||.+|++||++||+||+++++
T Consensus 401 ~~~~~~~l~~~~~~~f~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 447 (447)
T PLN02463 401 SRLFLPELLLFGLSLFSHASNTSRLEIMAKGTVPLVKMINNLIQDRI 447 (447)
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHcCChhHHHHHHHhcccCC
Confidence 99999999999999999999999999999999999999999999875
No 2
>PLN02697 lycopene epsilon cyclase
Probab=100.00 E-value=5e-64 Score=522.94 Aligned_cols=438 Identities=37% Similarity=0.648 Sum_probs=386.3
Q ss_pred cccccccCCCCCCCccCCCCCCCCCCCCCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhh
Q 010693 56 FGNFLELTPESVPEFLDFDLPWFHPSDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFE 135 (503)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~ 135 (503)
...++++++..+++.+++++|+++ ++...|||+||||||||+++|..|++ .|++|+|||+. ..++.++|.|...++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~DVvIVGaGPAGLalA~~Lak-~Gl~V~LIe~~--~p~~~n~GvW~~~l~ 155 (529)
T PLN02697 80 FVQMQANKSMDEQSKIADKLPPIS-IGDGTLDLVVIGCGPAGLALAAESAK-LGLNVGLIGPD--LPFTNNYGVWEDEFK 155 (529)
T ss_pred HHHHHhcCCccccccccccCCCCC-cccCcccEEEECcCHHHHHHHHHHHh-CCCcEEEecCc--ccCCCccccchhHHH
Confidence 466889999999999999999988 78888999999999999999999999 99999999975 345667899998899
Q ss_pred hcCchhhhhhccCceEEEecCCcccccCCCccccCHHHHHHHHHHHHHhCCcEEEEeEEEEEEEeCCEEE-EEeCCCcEE
Q 010693 136 DIGLVDCLDKTWPMTCVFINDHKTKYLDRPYGRVSRNILKTKLLENCVSNGVKFHKAKVWHVNHQEFESS-IVCDDGNEI 214 (503)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~-v~~~~g~~i 214 (503)
.+++.+++.+.|....+++++........+|+.|+|..|.+.|.+++.+.|+++++++|+++..+++.+. +.+.+|.++
T Consensus 156 ~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i 235 (529)
T PLN02697 156 DLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVI 235 (529)
T ss_pred hcCcHHHHHhhcCCcEEEecCCceeeccCcccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEE
Confidence 9999989999999999998876554467788889999999999999999999998889999988766654 456778899
Q ss_pred EeceEEecCCCCcc-cccccC-CCCCccceeEEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeec
Q 010693 215 KASLIVDASGFASS-FVEYDK-PRNHGYQIAHGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPF 292 (503)
Q Consensus 215 ~a~~vI~A~G~~s~-vr~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~ 292 (503)
+|++||+|+|.+|. ...+.. .....+|.++|++++++.++++++.+++|||+..|.........++ ++|+|++|+
T Consensus 236 ~A~lVI~AdG~~S~rl~~~~~~~~~~~~Q~a~Gi~ve~~~~~~d~~~~vlMD~r~~~~~~~~~~~~~~---p~FlYvlP~ 312 (529)
T PLN02697 236 PCRLATVASGAASGRLLQYEVGGPRVCVQTAYGVEVEVENNPYDPSLMVFMDYRDYFKEKVSHLEAEY---PTFLYAMPM 312 (529)
T ss_pred ECCEEEECCCcChhhhhccccCCCCcccEEEEEEEEEecCCCCCcchheeeccccccccccccccCCC---ceEEEEeec
Confidence 99999999999983 333222 1235689999999999988899999999999975532221122234 789999999
Q ss_pred CCCeEEEecccccCCCCCCHHHHHHHHHHHHhhcCCccceEeecceecccCCCCCCCCCCCEEEeccCCCCcCCcccHHH
Q 010693 293 DSNLVFLEETSLVSRPVLSYKEVKRRMAARLRHMGIRVKRVIEDEKCLIPMGGPLPVIPQSVMAIGSTSGLVHPSTGYMV 372 (503)
Q Consensus 293 ~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~p~~~~~~~~~~~v~liGDAa~~~~P~~G~G~ 372 (503)
++++++||.|++.+.+.++.+.+++++.+++.+.|+...++.+.+.+.+||+++.+...++++++||||++++|+||||+
T Consensus 313 ~~~~~~VE~T~l~~~~~l~~~~l~~~L~~~l~~~Gi~~~~i~~~E~g~iPm~g~~~~~~~~vl~vG~AAG~vhPsTGy~v 392 (529)
T PLN02697 313 SSTRVFFEETCLASKDAMPFDLLKKRLMSRLETMGIRILKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSV 392 (529)
T ss_pred CCCeEEEEEeeeccCCCCCHHHHHHHHHHHHHhCCCCcceEEEEEeeeecCCCCCcccCCCeeEeehhhcCCCCchhhhH
Confidence 99999999999888888889999999999999999988899999999999998888778999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHhcCCCC------CCCchhhHHHHhhcCcHHHHHHHHHHHHhHHHHhCCChhhHHHHHHHHccC
Q 010693 373 ARTMALAPALADAIAECLGSTRM------IRGRPLHQKVWNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAFFDL 446 (503)
Q Consensus 373 ~~al~~a~~lA~~l~~~l~~~~~------~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~~~l 446 (503)
..++.+|..+|++|+++++.+++ ........+.|+++|+.++++++.++.|+++.+.++++++++++|++||+|
T Consensus 393 ~~~l~~A~~~A~~ia~~l~~~~~~~~~~~~~~~~~~l~~~~~lw~~e~~r~~~~~~~g~~~l~~l~~~~~~~ff~~ff~L 472 (529)
T PLN02697 393 VRSLSEAPKYASVIARILKNVSSGGKLGTSNSSNISMQAWNTLWPQERKRQRAFFLFGLALILQLDTEGIRTFFVTFFRL 472 (529)
T ss_pred HHHHHhHHHHHHHHHHHhhCCccccccccccchHHHHHHHHHhChHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
Confidence 99999999999999999986641 135567788899999999999999999999999999999999999999999
Q ss_pred CccccccccCCCCCHHHHHHHHHHHHhhcCcchhhccee--ccCccHHHHHHhhhh
Q 010693 447 NPYYWHGFLSSRLSLAELAGLSLSLFGHASNSSRLDIVT--KCPLPLVKMMGNLAL 500 (503)
Q Consensus 447 ~~~~~~~fl~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 500 (503)
|+++|.+||++++++.|++.++++||.+|||.+|+.||. +++.|+++||+|++.
T Consensus 473 ~~~~~~~Fl~~~l~~~~l~~~~~~~f~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 528 (529)
T PLN02697 473 PKWMWQGFLGSTLSSVDLILFALYMFVIAPNQLRMQLVRHLISDPTGATMIKTYLT 528 (529)
T ss_pred CHHHHhhHhhccCCHHHHHHHHHHHHHhCChhHHHHHHHhhcCCchHhHHHHHhhc
Confidence 999999999999999999999999999999999999994 888999999999975
No 3
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=100.00 E-value=1.7e-49 Score=407.59 Aligned_cols=387 Identities=39% Similarity=0.702 Sum_probs=321.9
Q ss_pred cEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCCc
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRPY 166 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (503)
||+||||||||+++|+.|++ .|++|+|||+.+..+.+..|+.|...++++++.+++.+.|.....+...........+|
T Consensus 1 DviIiGaG~AGl~~A~~la~-~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELAR-PGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAY 79 (388)
T ss_pred CEEEECCCHHHHHHHHHHHh-CCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCce
Confidence 89999999999999999999 99999999999877777889999888888888888888898855444333333445667
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEEEeEEEEEEEe-CCEEEEEeCCCcEEEeceEEecCCCCcccccccCCCCCccceeEE
Q 010693 167 GRVSRNILKTKLLENCVSNGVKFHKAKVWHVNHQ-EFESSIVCDDGNEIKASLIVDASGFASSFVEYDKPRNHGYQIAHG 245 (503)
Q Consensus 167 ~~v~r~~l~~~L~~~~~~~gv~~~~~~v~~i~~~-~~~~~v~~~~g~~i~a~~vI~A~G~~s~vr~~~~~~~~~~~~~~g 245 (503)
..+++..+.+.|.+.+.+.|++++.++|+++..+ ++.+.|++++|.+++|++||+|+|.+|.+++.......+++.+.|
T Consensus 80 ~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s~~~~~~~~~~~~~q~~~G 159 (388)
T TIGR01790 80 GSVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGPLVQYVRFPLNVGFQVAYG 159 (388)
T ss_pred eEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCchhcccccCCCCceEEEEEE
Confidence 6799999999999999989999987789998877 567888888888999999999999999665433344557788999
Q ss_pred EEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCCeEEEecccccCCCCCCHHHHHHHHHHHHhh
Q 010693 246 ILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNLVFLEETSLVSRPVLSYKEVKRRMAARLRH 325 (503)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~l~~ 325 (503)
+.++++.++++.+..++||+...+.. .......+ ++|+|++|.+++.++++.+.+......+.+.+++.+.++++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~~~---~~f~~~lP~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~ 235 (388)
T TIGR01790 160 VEARLSRPPHGPSSMVIMDARVDQLA-APELKGYR---PTFLYAMPLGSTRVFIEETSLADRPALPRDRLRQRILARLNA 235 (388)
T ss_pred EEEEEcCCCCCCCceEEEeccccccc-cccccCCC---CceEEEeecCCCeEEEEeccccCCCCCCHHHHHHHHHHHHHH
Confidence 99998877888888889998765321 00000112 469999999999999998876655566788999999999988
Q ss_pred cCCccceEeecceecccCCCCCCCCCCCEEEeccCCCCcCCcccHHHHHHHHhHHHHHHHHHHHhcCCCCCCCchhhHHH
Q 010693 326 MGIRVKRVIEDEKCLIPMGGPLPVIPQSVMAIGSTSGLVHPSTGYMVARTMALAPALADAIAECLGSTRMIRGRPLHQKV 405 (503)
Q Consensus 326 ~~~~~~~i~~~~~~~~p~~~~~~~~~~~v~liGDAa~~~~P~~G~G~~~al~~a~~lA~~l~~~l~~~~~~~~l~~y~~~ 405 (503)
.++...++.+.+.+.+|+....+...+|++++|||||+++|++|||++.++++|..+|+.|.+++..+ .+...+.
T Consensus 236 ~g~~~~~i~~~~~~~iP~~~~~~~~~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~~~-----~~~~~~~ 310 (388)
T TIGR01790 236 QGWQIKTIEEEEWGALPVGLPGPFLPQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQS-----SELATAA 310 (388)
T ss_pred cCCeeeEEEeeeeEEEecccCCCccCCCeeeeechhcCcCCcccccHHHHHHHHHHHHHHHHHHhccC-----HHHHHHH
Confidence 88887888888889999987766688999999999999999999999999999999999999988643 2344455
Q ss_pred HhhcCcHHHHHHHHHHHHhHHHHhCCChhhHHHHHHHHccCCccccccccCCCCCHHHHHHHHHHHHhhcCcchhhcc
Q 010693 406 WNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAFFDLNPYYWHGFLSSRLSLAELAGLSLSLFGHASNSSRLDI 483 (503)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~~~l~~~~~~~fl~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 483 (503)
|...|..+..+...++.+....+..+++++.+++|..||+++++.+.+|+++++++.|+++++++||.++|+.+|+.+
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (388)
T TIGR01790 311 WDGLWPTERRRQRYFRLLGRMLFLALEPEERRRFFQRFFGLPEELWERFLAARLSLPDLLRVLLRMFGQPPNPVRSAL 388 (388)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHCCCHHHHhhhhcCCCCHHHHHHHHHHHhCcCChhhhhcC
Confidence 556666667776777777778889999999999999999999999999999999999999999999999999999864
No 4
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=100.00 E-value=2.8e-48 Score=394.76 Aligned_cols=366 Identities=36% Similarity=0.593 Sum_probs=312.6
Q ss_pred cEEEECCCHHHHHHHHHH--HccCCCcEEEEcCCCCCCCCC--cccchhHhhhhcCchhhhhhccCceEEEecCCccccc
Q 010693 87 DVIIIGTGPAGLRLAEQV--SSRHSVKVCCVDPSPLSTWPN--NYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYL 162 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~L--a~~~G~~V~viE~~~~~~~~~--~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (503)
|||||||||||+++|+.| ++ .|.+|+|||+.+...+++ .|++|...+.. +++++.+.|....+++++......
T Consensus 1 DviIvGaGpAGlslA~~l~~~~-~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~--~~~~v~~~w~~~~v~~~~~~~~~~ 77 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADAR-PGLSVLLIDPKPKPPWPNDRTWCFWEKDLGP--LDSLVSHRWSGWRVYFPDGSRILI 77 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcC-CCCEEEEEcCCccccccCCcccccccccccc--hHHHHheecCceEEEeCCCceEEc
Confidence 899999999999999999 77 899999999988875554 45666544222 688999999999999988765444
Q ss_pred CCCccccCHHHHHHHHHHHHHhCCcEEEEeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCcccccccCCCCCccce
Q 010693 163 DRPYGRVSRNILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSFVEYDKPRNHGYQI 242 (503)
Q Consensus 163 ~~~~~~v~r~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~vr~~~~~~~~~~~~ 242 (503)
..+|+.|++..|.+.|.+++.+.|+.+++++|++++.+++.+.|++++|++++|++||||+|..+. .....++|.
T Consensus 78 ~~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~-----~~~~~~~Q~ 152 (374)
T PF05834_consen 78 DYPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP-----KARPLGLQH 152 (374)
T ss_pred ccceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc-----cccccccce
Confidence 568888999999999999999666666699999999999888999999999999999999997765 334567899
Q ss_pred eEEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCCeEEEecccccCCCCCCHHHHHHHHHHH
Q 010693 243 AHGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNLVFLEETSLVSRPVLSYKEVKRRMAAR 322 (503)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~ 322 (503)
++|++++++.+.|+++.+++|||+..+.. ++ ++|+|++|++++++++|+|.+...+.++.+.+.+++.++
T Consensus 153 f~G~~v~~~~~~f~~~~~~lMD~r~~~~~-------~~---~~F~Y~lP~~~~~alvE~T~fs~~~~~~~~~~~~~l~~~ 222 (374)
T PF05834_consen 153 FYGWEVETDEPVFDPDTATLMDFRVPQSA-------DG---PSFLYVLPFSEDRALVEETSFSPRPALPEEELKARLRRY 222 (374)
T ss_pred eEEEEEeccCCCCCCCceEEEEecccCCC-------CC---ceEEEEEEcCCCeEEEEEEEEcCCCCCCHHHHHHHHHHH
Confidence 99999999988899999999999976421 34 799999999999999999999888889999999999999
Q ss_pred HhhcCCccceEeecceecccC--CCCCCCCCCCEEEeccCCCCcCCcccHHHHHHHHhHHHHHHHHHHHhcCCCCCCCch
Q 010693 323 LRHMGIRVKRVIEDEKCLIPM--GGPLPVIPQSVMAIGSTSGLVHPSTGYMVARTMALAPALADAIAECLGSTRMIRGRP 400 (503)
Q Consensus 323 l~~~~~~~~~i~~~~~~~~p~--~~~~~~~~~~v~liGDAa~~~~P~~G~G~~~al~~a~~lA~~l~~~l~~~~~~~~l~ 400 (503)
+..+++...++.+.|.+.||| .+..+...++++.+|+|||+++|+|||++..+++.|..+|+.+.+. .
T Consensus 223 l~~~g~~~~~i~~~E~G~IPm~~~~~~~~~~~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia~~l~~~----------~ 292 (374)
T PF05834_consen 223 LERLGIDDYEILEEERGVIPMTTGGFPPRFGQRVIRIGTAGGMVKPSTGYSFARIQRQADAIADALAKG----------G 292 (374)
T ss_pred HHHcCCCceeEEEeecceeecccCCCccccCCCeeeEEccccCCCCcccHHHHHHHHHHHHHHHHHhhc----------c
Confidence 999999999999999999999 5666677888999999999999999999999999999888888753 1
Q ss_pred hhHHHHhhcCcHHHHHHHHHH-HHhHHHHhCCChhhHHHHHHHHccCCccccccccCCCCCHHHHHHHHHHHHhhcCcch
Q 010693 401 LHQKVWNGLWPIDRRCNREFY-SFGMETLLKLDLKGTRRFFDAFFDLNPYYWHGFLSSRLSLAELAGLSLSLFGHASNSS 479 (503)
Q Consensus 401 ~y~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~f~~~~~l~~~~~~~fl~~~~~~~~~~~~~~~~f~~~~~~~ 479 (503)
.....|..+|+.++++...|+ .+++++|.++++++.+.||+.|++++++.+.+||+++.++.|.++++++||..++...
T Consensus 293 ~~~~~~~~~~~~~~~~~~~flr~l~~~~l~~~~~~~~~~f~~~f~~l~~~~~~~FL~~~~~~~~~~~i~~~~p~~p~~~a 372 (374)
T PF05834_consen 293 APLRAWSPLWPRERWRDRRFLRVLGLEVLLRLPPDGRRIFFRMFFRLPPDRIARFLSERSSLADDLRIMLALPKRPFLRA 372 (374)
T ss_pred ccccccccccHHHHHHHHHHHHHhcchhhcccChhHHHHHHHHHhCCCHHHHHhHhcCCCCHHHHHHHHHhCCCcChhhc
Confidence 112235556666666666655 5677888999999999999999999999999999999999999999999998776544
Q ss_pred h
Q 010693 480 R 480 (503)
Q Consensus 480 ~ 480 (503)
+
T Consensus 373 ~ 373 (374)
T PF05834_consen 373 L 373 (374)
T ss_pred c
Confidence 3
No 5
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=100.00 E-value=3.8e-44 Score=362.86 Aligned_cols=346 Identities=21% Similarity=0.309 Sum_probs=276.9
Q ss_pred cEEEECCCHHHHHHHHHHHccC--CCcEEEEcCCCCCCCCCcccchhHhhhhc---CchhhhhhccCceEEEecCCcccc
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRH--SVKVCCVDPSPLSTWPNNYGVWVDEFEDI---GLVDCLDKTWPMTCVFINDHKTKY 161 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~--G~~V~viE~~~~~~~~~~~g~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 161 (503)
||+|||||+||+++|+.|++ . |++|+|+|+.+.....+.|++|...+.+. .+++++.+.|....+++++.. ..
T Consensus 1 DviIvGaG~AGl~lA~~L~~-~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~-~~ 78 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQR-ARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYR-RK 78 (370)
T ss_pred CEEEECccHHHHHHHHHHHh-cCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchh-hh
Confidence 89999999999999999998 6 99999999988776667788886654433 256778899999999886543 34
Q ss_pred cCCCccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCcccccccCCCCCcc
Q 010693 162 LDRPYGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSFVEYDKPRNHGY 240 (503)
Q Consensus 162 ~~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~vr~~~~~~~~~~ 240 (503)
+..+|+.+++..|.+.|.+.+.. + ++ +++|++++ .+++. +.+|++++|++||+|+|.+|... ...++
T Consensus 79 l~~~Y~~I~r~~f~~~l~~~l~~-~--i~~~~~V~~v~--~~~v~--l~dg~~~~A~~VI~A~G~~s~~~-----~~~~~ 146 (370)
T TIGR01789 79 LKTAYRSMTSTRFHEGLLQAFPE-G--VILGRKAVGLD--ADGVD--LAPGTRINARSVIDCRGFKPSAH-----LKGGF 146 (370)
T ss_pred cCCCceEEEHHHHHHHHHHhhcc-c--EEecCEEEEEe--CCEEE--ECCCCEEEeeEEEECCCCCCCcc-----cccee
Confidence 56788889999999999877743 3 44 88999883 44544 47888999999999999887422 22588
Q ss_pred ceeEEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCCeEEEecccccCCCCCCHHHHHHHHH
Q 010693 241 QIAHGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNLVFLEETSLVSRPVLSYKEVKRRMA 320 (503)
Q Consensus 241 ~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~~v~~~~~~~~~~~~~~~~~~~l~ 320 (503)
|.++|++.++.. +++++.+++|||+..+. +| ++|+|++|++++.+++++|.+...+.++.+.+.+++.
T Consensus 147 Q~f~G~~~r~~~-p~~~~~~~lMD~~~~q~--------~g---~~F~Y~lP~~~~~~lvE~T~~s~~~~l~~~~l~~~l~ 214 (370)
T TIGR01789 147 QVFLGREMRLQE-PHGLENPIIMDATVDQL--------AG---YRFVYVLPLGSHDLLIEDTYYADDPLLDRNALSQRID 214 (370)
T ss_pred eEEEEEEEEEcC-CCCCCccEEEeeeccCC--------CC---ceEEEECcCCCCeEEEEEEeccCCCCCCHHHHHHHHH
Confidence 999999999985 49999999999986532 55 7899999999999999999998778899999999999
Q ss_pred HHHhhcCCccceEeecceecccCCCC--CC---CCCCCEEEeccCCCCcCCcccHHHHHHHHhHHHHHHHHHHHhcCCCC
Q 010693 321 ARLRHMGIRVKRVIEDEKCLIPMGGP--LP---VIPQSVMAIGSTSGLVHPSTGYMVARTMALAPALADAIAECLGSTRM 395 (503)
Q Consensus 321 ~~l~~~~~~~~~i~~~~~~~~p~~~~--~~---~~~~~v~liGDAa~~~~P~~G~G~~~al~~a~~lA~~l~~~l~~~~~ 395 (503)
+++...++...++++.+.+++||... .+ ...++++++|||||+++|++|||++.++++|..||+.+. + .+.
T Consensus 215 ~~~~~~g~~~~~i~~~e~g~iPm~~~~~~~~~~~~~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~la~~~~--~-~~~- 290 (370)
T TIGR01789 215 QYARANGWQNGTPVRHEQGVLPVLLGGDFSAYQDEVRIVAIAGLRAGLTHPTTGYSLPVAVENADALAAQPD--L-SSE- 290 (370)
T ss_pred HHHHHhCCCceEEEEeeeeEEeeecCCCcccccccCCceeeeecccccccccccccHHHHHHHHHHHHhccC--c-Ccc-
Confidence 99988888889999889999998432 12 235669999999999999999999999999999887763 1 110
Q ss_pred CCCchhhHHHHhhcCcHHHHHHHHHHHHhHHHHhCC-ChhhHHHHHHHHccCCccccccccCCCCCHHHHHHHH
Q 010693 396 IRGRPLHQKVWNGLWPIDRRCNREFYSFGMETLLKL-DLKGTRRFFDAFFDLNPYYWHGFLSSRLSLAELAGLS 468 (503)
Q Consensus 396 ~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~f~~~~~l~~~~~~~fl~~~~~~~~~~~~~ 468 (503)
.+. +.. ..|+..+++...+++++..+|+.. .++..+++|.+||+++++.|.+||++++++.|.++++
T Consensus 291 --~~~---~~~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~f~~~f~l~~~~~~rFl~~~~~~~~~~~i~ 358 (370)
T TIGR01789 291 --QLA---AFI-DSRARRHWSKTGYYRLLNRMLFFAAKPEKRVRVFQRFYGLREGLIERFYAARSNTFDKLRVL 358 (370)
T ss_pred --chh---hhh-hHHHHHHHHHhHHHHHHHHHHhccCCchhHHHHHHHHhCCCHHHHHHHHhcCCCHHHHHHHH
Confidence 110 001 335555666677888888887644 4445689999999999999999999999999955544
No 6
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=100.00 E-value=3.7e-34 Score=293.42 Aligned_cols=331 Identities=15% Similarity=0.193 Sum_probs=224.0
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccch--hHhhhhcCc-hhhhhhccCceEEEecCCcccc-
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVW--VDEFEDIGL-VDCLDKTWPMTCVFINDHKTKY- 161 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~--~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~- 161 (503)
|||+||||||||+++|+.|++ .|++|+|+|+.. ..+..||.. ...++.+++ ++.+...|....++.+++....
T Consensus 1 yDVvIVGaGpAG~~aA~~La~-~G~~V~l~E~~~--~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 77 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLAR-AGIETILLERAL--SNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKV 77 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHh-CCCcEEEEECCC--CCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeee
Confidence 799999999999999999999 999999999872 233446443 334667777 4556667777777665542211
Q ss_pred -cC--CCcc-ccCHHHHHHHHHHHHHhCCcEEEEeEEEEEEEeCCEEEEEeCC------C--cEEEeceEEecCCCCccc
Q 010693 162 -LD--RPYG-RVSRNILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDD------G--NEIKASLIVDASGFASSF 229 (503)
Q Consensus 162 -~~--~~~~-~v~r~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~------g--~~i~a~~vI~A~G~~s~v 229 (503)
.. ..|. .++|..|++.|.+++.+.|++++.++|+++..+++.+.|++.+ | .+++|++||+|||.+|.+
T Consensus 78 ~~~~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v 157 (388)
T TIGR02023 78 TIPSEDGYVGMVRREVFDSYLRERAQKAGAELIHGLFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSPV 157 (388)
T ss_pred ccCCCCCceEeeeHHHHHHHHHHHHHhCCCEEEeeEEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcHH
Confidence 11 2232 4899999999999999999999955799998888877777653 2 379999999999999999
Q ss_pred ccccCCCCCccceeEEEEEEecC----CCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCCeEEEeccccc
Q 010693 230 VEYDKPRNHGYQIAHGILAEVES----HPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNLVFLEETSLV 305 (503)
Q Consensus 230 r~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~~v~~~~~~ 305 (503)
++..+.... .....++...+.. ..++++...++ +... +.++ +|.|++|.++. +.++....
T Consensus 158 ~r~lg~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~p~-----~y~wv~P~~~~-~~vg~~~~- 221 (388)
T TIGR02023 158 AKELGLPKN-LPRVIAYQERIKLPDDKMAYYEELADVY-YGGE-------VSPD-----FYGWVFPKGDH-IAVGTGTG- 221 (388)
T ss_pred HHHcCCCCC-CcEEEEEEEEecCCchhcccCCCeEEEE-ECCC-------cCCC-----ceEEEeeCCCe-eEEeEEEC-
Confidence 986544321 1122333333321 12334433332 1100 1111 58999999864 33333211
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCccceEeecceecccCCCCCCCCCCCEEEeccCCCCcCCcccHHHHHHHHhHHHHHHH
Q 010693 306 SRPVLSYKEVKRRMAARLRHMGIRVKRVIEDEKCLIPMGGPLPVIPQSVMAIGSTSGLVHPSTGYMVARTMALAPALADA 385 (503)
Q Consensus 306 ~~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~p~~~~~~~~~~~v~liGDAa~~~~P~~G~G~~~al~~a~~lA~~ 385 (503)
....+.+++.+.+.+.+. +...++...+.+.+|+........++++++|||||+++|++|+|++.||.+|..+|++
T Consensus 222 -~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~ip~~~~~~~~~~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~ 297 (388)
T TIGR02023 222 -THGFDAKQLQANLRRRAG---LDGGQTIRREAAPIPMKPRPRWDFGRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQA 297 (388)
T ss_pred -CCCCCHHHHHHHHHHhhC---CCCceEeeeeeEeccccccccccCCCEEEEeccccCcCCcccccHHHHHHHHHHHHHH
Confidence 122345566666655543 2223345555677888533334678999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCchhhHHHHhhcCcHHHHHHHHHHHHhHHHHhCCChhhHHHHHHHHcc
Q 010693 386 IAECLGSTRMIRGRPLHQKVWNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAFFD 445 (503)
Q Consensus 386 l~~~l~~~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~~~ 445 (503)
|+++++.++ ...+..|++.|++.|..+.+..+. +..+..++++.++.++..+.+
T Consensus 298 i~~~l~~~~-~~~L~~Y~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 351 (388)
T TIGR02023 298 IAEYLQNGD-ATDLRHYERKFMKLYGTTFRVLRV-----LQMVYYRSDRRREVFVEMCRD 351 (388)
T ss_pred HHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHccCHHHHHHHHHHhcc
Confidence 999987543 456899999999988776654332 234456677666656555543
No 7
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=100.00 E-value=2e-33 Score=290.86 Aligned_cols=334 Identities=16% Similarity=0.182 Sum_probs=217.5
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchh--HhhhhcCc-hhhhhhccCceEEEecCCc
Q 010693 82 DRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWV--DEFEDIGL-VDCLDKTWPMTCVFINDHK 158 (503)
Q Consensus 82 ~~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~--~~l~~~~~-~~~~~~~~~~~~~~~~~~~ 158 (503)
.+.+|||+||||||||+++|+.|++ +|++|+|+|+.+. .+..||... ..++.+++ +..+...+....+..+...
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~-~G~~VlllEr~~~--~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~ 112 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAK-GGIETFLIERKLD--NAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNV 112 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHh-CCCcEEEEecCCC--CCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCce
Confidence 3456999999999999999999999 9999999999753 334565533 34566776 3444444555455443332
Q ss_pred cccc-----CCCc-cccCHHHHHHHHHHHHHhCCcEEEEeEEEEEEEe---CCEEEEEeCC-------C--cEEEeceEE
Q 010693 159 TKYL-----DRPY-GRVSRNILKTKLLENCVSNGVKFHKAKVWHVNHQ---EFESSIVCDD-------G--NEIKASLIV 220 (503)
Q Consensus 159 ~~~~-----~~~~-~~v~r~~l~~~L~~~~~~~gv~~~~~~v~~i~~~---~~~~~v~~~~-------g--~~i~a~~vI 220 (503)
.... ..++ +.++|..|++.|++++.+.|++++..+++++..+ ++.+.|.+.+ | .+++||+||
T Consensus 113 ~v~~~~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VI 192 (450)
T PLN00093 113 AVDIGKTLKPHEYIGMVRREVLDSFLRERAQSNGATLINGLFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVI 192 (450)
T ss_pred EEEecccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEeceEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEE
Confidence 1111 1233 2389999999999999999999995568777642 2345555532 3 479999999
Q ss_pred ecCCCCcccccccCCCCCccceeEEEEEEecCC----CCCCCceEEeeccCCCCCCCcccccCCCCCC-eEEEEeecCCC
Q 010693 221 DASGFASSFVEYDKPRNHGYQIAHGILAEVESH----PFDLDKMVLMDWRDSHLGNEPYLRASNLKLP-TFLYAMPFDSN 295 (503)
Q Consensus 221 ~A~G~~s~vr~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~-~~~~~~P~~~~ 295 (503)
+|||.+|.+++..+... .+...++..++..+ .+..+...++ + +.+..| +|.|++|.++.
T Consensus 193 gADG~~S~vrr~lg~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------g~~~~p~~Y~WifP~g~~ 256 (450)
T PLN00093 193 GADGANSRVAKDIDAGD--YDYAIAFQERIKIPDDKMEYYEDLAEMY-V-------------GDDVSPDFYGWVFPKCDH 256 (450)
T ss_pred EcCCcchHHHHHhCCCC--cceeEEEEEEEeCChhhccccCCeEEEE-e-------------CCCCCCCceEEEEECCCc
Confidence 99999999998765542 23344544443221 1222222111 1 111112 48899999954
Q ss_pred eEEEecccccCCCCCCHHHHHHHHHHHHhhcCCccceEeecceecccCCCCCCCCCCCEEEeccCCCCcCCcccHHHHHH
Q 010693 296 LVFLEETSLVSRPVLSYKEVKRRMAARLRHMGIRVKRVIEDEKCLIPMGGPLPVIPQSVMAIGSTSGLVHPSTGYMVART 375 (503)
Q Consensus 296 ~~~v~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~p~~~~~~~~~~~v~liGDAa~~~~P~~G~G~~~a 375 (503)
+.|+...... ..+...+.+.+.+.+... ....++.+.+.+.+|++.......+|++++|||||+++|++|+|++.|
T Consensus 257 -~~VG~g~~~~--~~~~~~~~~~l~~~~~~~-l~~~~~~~~~~~~ip~~~~~~~~~~~vlLvGDAAg~v~P~tGeGI~~A 332 (450)
T PLN00093 257 -VAVGTGTVVN--KPAIKKYQRATRNRAKDK-IAGGKIIRVEAHPIPEHPRPRRVRGRVALVGDAAGYVTKCSGEGIYFA 332 (450)
T ss_pred -EEEEEEEccC--CCChHHHHHHHHHHhhhh-cCCCeEEEEEEEEcccccccceeCCCcEEEeccccCCCccccccHHHH
Confidence 4455422211 223445555555443321 111334555667788754333467899999999999999999999999
Q ss_pred HHhHHHHHHHHHHHhcCCC---CCCCchhhHHHHhhcCcHHHHHHHHHHHHhHHHHhCCChhhHHHHHHHH
Q 010693 376 MALAPALADAIAECLGSTR---MIRGRPLHQKVWNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAF 443 (503)
Q Consensus 376 l~~a~~lA~~l~~~l~~~~---~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~ 443 (503)
|.+|..+|+++.++++.+. +...+..|++.|++.|..+.+....++++ +.. ++..++.++...
T Consensus 333 m~sg~~AAe~i~~~~~~g~~~~s~~~L~~Y~~~~~~~~g~~~~~~~~l~~~----~~~-~~~~~~~~~~~~ 398 (450)
T PLN00093 333 AKSGRMCAEAIVEGSENGTRMVDEADLREYLRKWDKKYWPTYKVLDILQKV----FYR-SNPAREAFVEMC 398 (450)
T ss_pred HHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcC-CcHHHHHHHHHh
Confidence 9999999999999986542 23468999999998887777766655543 333 444554555444
No 8
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=100.00 E-value=1.5e-32 Score=281.75 Aligned_cols=332 Identities=16% Similarity=0.194 Sum_probs=216.1
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchh--HhhhhcCc-hhhhhhccCceEEEecCCccccc
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWV--DEFEDIGL-VDCLDKTWPMTCVFINDHKTKYL 162 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~--~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 162 (503)
+||+||||||||+++|+.|++ +|++|+|+|+.+.. +..||... ..++.+++ .+.+...+....+..++......
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~-~G~~V~llE~~~~~--~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~ 77 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLAS-AGIQTFLLERKPDN--AKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDI 77 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHh-CCCcEEEEecCCCC--CCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEe
Confidence 699999999999999999999 99999999987543 34565433 34667776 34555555555555443322111
Q ss_pred -----CCCc-cccCHHHHHHHHHHHHHhCCcEEEEeEEEEEEEe---CCEEEEEe--CC-----C--cEEEeceEEecCC
Q 010693 163 -----DRPY-GRVSRNILKTKLLENCVSNGVKFHKAKVWHVNHQ---EFESSIVC--DD-----G--NEIKASLIVDASG 224 (503)
Q Consensus 163 -----~~~~-~~v~r~~l~~~L~~~~~~~gv~~~~~~v~~i~~~---~~~~~v~~--~~-----g--~~i~a~~vI~A~G 224 (503)
...+ ..++|..|++.|.+++.+.|++++..++.++... ++.+.|++ .+ | .+++|++||+|||
T Consensus 78 ~~~~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG 157 (398)
T TIGR02028 78 GRTLKEHEYIGMLRREVLDSFLRRRAADAGATLINGLVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADG 157 (398)
T ss_pred ccCCCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcceEEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCC
Confidence 1233 2489999999999999999999994457777532 33444443 22 3 3799999999999
Q ss_pred CCcccccccCCCCCccceeEEEEE--EecCC--CCCCCceEEeeccCCCCCCCcccccCCCCCC-eEEEEeecCCCeEEE
Q 010693 225 FASSFVEYDKPRNHGYQIAHGILA--EVESH--PFDLDKMVLMDWRDSHLGNEPYLRASNLKLP-TFLYAMPFDSNLVFL 299 (503)
Q Consensus 225 ~~s~vr~~~~~~~~~~~~~~g~~~--~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~-~~~~~~P~~~~~~~v 299 (503)
.+|.+++..+.... +....+.. .++.. .+..+...++ + +++..| +|.|++|.++. +.|
T Consensus 158 ~~S~v~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------g~~~~p~gY~WifP~~~~-~~V 220 (398)
T TIGR02028 158 ANSRVAKEIDAGDY--SYAIAFQERIRLPDEKMAYYDDLAEMY-V-------------GDDVSPDFYGWVFPKCDH-VAV 220 (398)
T ss_pred cchHHHHHhCCCCc--ceEEEEEEEeeCChhhcccCCCeEEEE-e-------------CCCCCCCceEEEEECCCe-EEE
Confidence 99999987655322 22222222 22211 1122222111 1 111112 48999999954 445
Q ss_pred ecccccCCCCCCHHHHHHHHHHHHhhcCCccceEeecceecccCCCCCCCCCCCEEEeccCCCCcCCcccHHHHHHHHhH
Q 010693 300 EETSLVSRPVLSYKEVKRRMAARLRHMGIRVKRVIEDEKCLIPMGGPLPVIPQSVMAIGSTSGLVHPSTGYMVARTMALA 379 (503)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~p~~~~~~~~~~~v~liGDAa~~~~P~~G~G~~~al~~a 379 (503)
+...... ....+.+.+.+....... ....++.+...+.+|++.......+|++++|||||+++|++|+||+.||.+|
T Consensus 221 G~g~~~~--~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~ip~~~~~~~~~~~~llvGDAAg~v~P~tGeGI~~A~~sg 297 (398)
T TIGR02028 221 GTGTVAA--KPEIKRLQSGIRARAAGK-VAGGRIIRVEAHPIPEHPRPRRVVGRVALVGDAAGYVTKCSGEGIYFAAKSG 297 (398)
T ss_pred EEEeCCC--CccHHHHHHhhhhhhhhc-cCCCcEEEEEEEeccccccccEECCCEEEEEcCCCCCCcccccchHHHHHHH
Confidence 5532211 223344444444332211 1112344455667887544344678999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCC---CCCCchhhHHHHhhcCcHHHHHHHHHHHHhHHHHhCCChhhHHHHHHHHcc
Q 010693 380 PALADAIAECLGSTR---MIRGRPLHQKVWNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAFFD 445 (503)
Q Consensus 380 ~~lA~~l~~~l~~~~---~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~~~ 445 (503)
..+|+++.++++.++ +...+..|++.|++.+..+.+....+.++ +.. +++.+++++..+.+
T Consensus 298 ~~aa~~i~~~~~~~~~~~~~~~l~~Y~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~ 361 (398)
T TIGR02028 298 RMCAEAIVEESRLGGAVTEEGDLAGYLRRWDKEYRPTYRVLDLLQRV----FYR-SNAGREAFVEMCAD 361 (398)
T ss_pred HHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcC-CcHHHHHHHHHhcC
Confidence 999999999987654 34568999999998888777766665433 444 67777777766644
No 9
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=100.00 E-value=3.6e-32 Score=279.01 Aligned_cols=319 Identities=18% Similarity=0.219 Sum_probs=221.3
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccc--hhHhhhhcCchhh--hhhccCceEEEecCCcc
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGV--WVDEFEDIGLVDC--LDKTWPMTCVFINDHKT 159 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~--~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~ 159 (503)
.+|||+||||||||++||+.|++ .|++|+|+|+++..+.+..|+. ....++.+..... +........+++... .
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~-~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~-~ 79 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAK-AGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGE-K 79 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHH-cCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCC-c
Confidence 57999999999999999999999 9999999999998888777733 3233445444221 455555666666622 2
Q ss_pred cccCC--Cccc-cCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCC-CcEEEeceEEecCCCCcccccccC
Q 010693 160 KYLDR--PYGR-VSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDD-GNEIKASLIVDASGFASSFVEYDK 234 (503)
Q Consensus 160 ~~~~~--~~~~-v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~-g~~i~a~~vI~A~G~~s~vr~~~~ 234 (503)
..... +.++ ++|..|+++|++++++.|++++ +++++++..+++++.+.... +.+++|++||+|||.+|.+++..+
T Consensus 80 ~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~l~~~lg 159 (396)
T COG0644 80 VAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSALARKLG 159 (396)
T ss_pred eEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchHHHHHhC
Confidence 22222 3344 8999999999999999999999 99999999988766555443 468999999999999999998766
Q ss_pred CCCC-ccceeEEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCCeEEEecccccCCCCCCHH
Q 010693 235 PRNH-GYQIAHGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNLVFLEETSLVSRPVLSYK 313 (503)
Q Consensus 235 ~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~~v~~~~~~~~~~~~~~ 313 (503)
.... ......++......+ .+.+...++-+... .. ..+|.|++|.+++.+.|+.............
T Consensus 160 ~~~~~~~~~~~~~~e~~~~~-~~~~~~~~~~~~~~----------~~--~~Gy~wifP~~~~~~~VG~g~~~~~~~~~~~ 226 (396)
T COG0644 160 LKDRKPEDYAIGVKEVIEVP-DDGDVEEFLYGPLD----------VG--PGGYGWIFPLGDGHANVGIGVLLDDPSLSPF 226 (396)
T ss_pred CCCCChhheeEEeEEEEecC-CCCceEEEEecCCc----------cC--CCceEEEEECCCceEEEEEEEecCCcCCCch
Confidence 6522 222333333333322 22222222211111 11 1479999999999887766543332111111
Q ss_pred HHHHHHHHHHhhcCCc----cceEeecceecccCCCCCCC--CCCCEEEeccCCCCcCCcccHHHHHHHHhHHHHHHHHH
Q 010693 314 EVKRRMAARLRHMGIR----VKRVIEDEKCLIPMGGPLPV--IPQSVMAIGSTSGLVHPSTGYMVARTMALAPALADAIA 387 (503)
Q Consensus 314 ~~~~~l~~~l~~~~~~----~~~i~~~~~~~~p~~~~~~~--~~~~v~liGDAa~~~~P~~G~G~~~al~~a~~lA~~l~ 387 (503)
.+.+.++..+.... ...+.+...+.+|.++.... +.++++++||||++++|++|.|+..||.+|..+|+.|.
T Consensus 227 --~~~l~~f~~~~~~~~~~~~~~~~~~~~~~ip~~g~~~~~~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~ 304 (396)
T COG0644 227 --LELLERFKEHPAIRKLLLGGKILEYAAGGIPEGGPASRPLVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIA 304 (396)
T ss_pred --HHHHHHHHhCcccchhccCCceEEEeeeecccCCcCCCccccCCEEEEeccccCCCCcccCcHHHHHHHHHHHHHHHH
Confidence 12333333222111 13566667789999876644 67899999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCchhhHHHHhhcCcHHHHHHHHHH
Q 010693 388 ECLGSTRMIRGRPLHQKVWNGLWPIDRRCNREFY 421 (503)
Q Consensus 388 ~~l~~~~~~~~l~~y~~~~~~~~~~~~~~~~~~~ 421 (503)
+++..+ ...+..|++.|++.+..+........
T Consensus 305 ~~~~~~--~~~l~~Y~~~~~~~~~~~~~~~~~~~ 336 (396)
T COG0644 305 EALEGG--EEALAEYERLLRKSLAREDLKSLRLL 336 (396)
T ss_pred HHHHcC--hhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 998765 45788899999987776655444443
No 10
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.98 E-value=2.1e-30 Score=265.39 Aligned_cols=304 Identities=22% Similarity=0.250 Sum_probs=201.4
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCC--Ccccc---hhHhhhhcCc-hhhhhhcc-CceEEEecCC
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWP--NNYGV---WVDEFEDIGL-VDCLDKTW-PMTCVFINDH 157 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~--~~~g~---~~~~l~~~~~-~~~~~~~~-~~~~~~~~~~ 157 (503)
.+||+||||||+||++|+.|++ .|++|+|||+.+..... +.... ....|+.+|+ +.+..... ..........
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~-~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~ 80 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALAR-AGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDG 80 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHh-CCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecC
Confidence 5899999999999999999999 99999999998322222 22222 3456888998 66555332 1122222211
Q ss_pred cc-------cccC-CCccc-cCHHHHHHHHHHHHHhCC-cEEE-EeEEEEEEEeCCEEEEEeC-CCcEEEeceEEecCCC
Q 010693 158 KT-------KYLD-RPYGR-VSRNILKTKLLENCVSNG-VKFH-KAKVWHVNHQEFESSIVCD-DGNEIKASLIVDASGF 225 (503)
Q Consensus 158 ~~-------~~~~-~~~~~-v~r~~l~~~L~~~~~~~g-v~~~-~~~v~~i~~~~~~~~v~~~-~g~~i~a~~vI~A~G~ 225 (503)
.. .... .++++ +.+..+.+.|.+.+.+.+ ++++ +++|+.++.+++.+.+++. ||++++||+||+|||.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~ 160 (387)
T COG0654 81 GRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGA 160 (387)
T ss_pred CceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCC
Confidence 10 0111 33344 899999999999998855 9999 9999999999988888888 9999999999999999
Q ss_pred CcccccccCC-CCCcccee-EEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCC---eEEEe
Q 010693 226 ASSFVEYDKP-RNHGYQIA-HGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSN---LVFLE 300 (503)
Q Consensus 226 ~s~vr~~~~~-~~~~~~~~-~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~---~~~v~ 300 (503)
+|.+|+..+. ......+. ..+...+.. ..+.....+.. +.+.+ -+.++|.+++ .+|..
T Consensus 161 ~S~vR~~~~~~~~~~~~y~~~~l~~~~~~-~~~~~~~~~~~-----------~~~~~-----~~~~~p~~~~~~~~~~~~ 223 (387)
T COG0654 161 NSAVRRAAGIAEFSGRDYGQTALVANVEP-EEPHEGRAGER-----------FTHAG-----PFALLPLPDNRSSVVWSL 223 (387)
T ss_pred chHHHHhcCCCCccCCCCCceEEEEEeec-CCCCCCeEEEE-----------ecCCC-----ceEEEecCCCceeEEEEC
Confidence 9999997762 22232222 222223222 21222222211 22232 3677788733 22322
Q ss_pred cccccC-CCCCCHHHHHHHHHHHHhhcCCccceE-eecceecccCCCCCC--CCCCCEEEeccCCCCcCCcccHHHHHHH
Q 010693 301 ETSLVS-RPVLSYKEVKRRMAARLRHMGIRVKRV-IEDEKCLIPMGGPLP--VIPQSVMAIGSTSGLVHPSTGYMVARTM 376 (503)
Q Consensus 301 ~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~i-~~~~~~~~p~~~~~~--~~~~~v~liGDAa~~~~P~~G~G~~~al 376 (503)
...... ....+.+.+...+.+.++.... ...+ .......+|+..... ...+|++++|||||.++|+.|||+|.|+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~pl~~~~a~~~~~~Rv~LiGDAAH~~~P~~gQG~nlgl 302 (387)
T COG0654 224 PPGPAEDLQGLSDEEFLRELQRRLGERDP-LGRVTLVSSRSAFPLSLRVAERYRRGRVVLIGDAAHAMHPLAGQGANLAL 302 (387)
T ss_pred ChhhHHHHhcCCHHHHHHHHHHhcCcccc-cceEEEccccccccccchhhhheecCcEEEEeeccccCCCccccchhhhh
Confidence 221111 2445666666666766655422 2222 333455677754443 3679999999999999999999999999
Q ss_pred HhHHHHHHHHHHHhcCCCCCCCchhhHHHHh
Q 010693 377 ALAPALADAIAECLGSTRMIRGRPLHQKVWN 407 (503)
Q Consensus 377 ~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~ 407 (503)
+|+..||+.|.+....+.+...++.|++..+
T Consensus 303 ~Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~ 333 (387)
T COG0654 303 EDAAALAEALAAAPRPGADAAALAAYEARRR 333 (387)
T ss_pred hhHHHHHHHHHHHhhcCccHHHHHHHHHhhh
Confidence 9999999999999874433567888876443
No 11
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.97 E-value=2.6e-29 Score=247.75 Aligned_cols=282 Identities=19% Similarity=0.269 Sum_probs=184.6
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCccc--chhHhhhhcCchh-hhhhccCceEEEecCCcccc-
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYG--VWVDEFEDIGLVD-CLDKTWPMTCVFINDHKTKY- 161 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g--~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~- 161 (503)
|||+||||||+|+++|+.|++ .|++|+|||+++.... ..++ .+...++.++... .....+....++...+....
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~-~g~~v~vie~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLAD-KGLRVLLLEKKSFPRY-KPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEI 78 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHH-CCCeEEEEeccCCCCc-ccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEe
Confidence 799999999999999999999 9999999999875443 2222 2222233333211 11112223333322221111
Q ss_pred -cCCCcc-ccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCC-cEEEeceEEecCCCCcccccccCCCC
Q 010693 162 -LDRPYG-RVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDG-NEIKASLIVDASGFASSFVEYDKPRN 237 (503)
Q Consensus 162 -~~~~~~-~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g-~~i~a~~vI~A~G~~s~vr~~~~~~~ 237 (503)
...++. .++|..+.+.|.+.+.+.|++++ +++|+++..+++.+.+.+.++ .+++||+||+|+|.+|.+++..+...
T Consensus 79 ~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s~~~~~~~~~~ 158 (295)
T TIGR02032 79 PIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRSIVAKKLGLRK 158 (295)
T ss_pred ccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcchHHHHhcCCCC
Confidence 112233 38999999999999999999998 999999998888777766544 57999999999999999888655544
Q ss_pred CccceeEEEEEEecCC--CCCCCceEEe-eccCCCCCCCcccccCCCCCCeEEEEeecCCCeEEEecccccCCCCCCHHH
Q 010693 238 HGYQIAHGILAEVESH--PFDLDKMVLM-DWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNLVFLEETSLVSRPVLSYKE 314 (503)
Q Consensus 238 ~~~~~~~g~~~~~~~~--~~~~~~~~~~-d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~~v~~~~~~~~~~~~~~~ 314 (503)
...+...++...+..+ .+..+...++ ++.. .. .+|+|++|++++...++.+........+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~---~~~~~~~P~~~~~~~v~~~~~~~~~~~~--- 221 (295)
T TIGR02032 159 EPRELGVAARAEVEMPDEEVDEDFVEVYIDRGI-----------SP---GGYGWVFPKGDGTANVGVGSRSAEEGED--- 221 (295)
T ss_pred CCcceeeEEEEEEecCCcccCcceEEEEcCCCc-----------CC---CceEEEEeCCCCeEEEeeeeccCCCCCC---
Confidence 4445555554444322 3344433332 1110 11 3689999999987665544332212223
Q ss_pred HHHHHHHHHhhcC-CccceEeecceecccCCCCCC-CCCCCEEEeccCCCCcCCcccHHHHHHHHhHHHHHHHH
Q 010693 315 VKRRMAARLRHMG-IRVKRVIEDEKCLIPMGGPLP-VIPQSVMAIGSTSGLVHPSTGYMVARTMALAPALADAI 386 (503)
Q Consensus 315 ~~~~l~~~l~~~~-~~~~~i~~~~~~~~p~~~~~~-~~~~~v~liGDAa~~~~P~~G~G~~~al~~a~~lA~~l 386 (503)
..+.+.++++..+ +...++.+...+.+|+....+ ...+||+++|||||+++|++|||++.||+||..||++|
T Consensus 222 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 222 LKKYLKDFLARRPELKDAETVEVIGAPIPIGRPDDKTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred HHHHHHHHHHhCcccccCcEEeeeceeeccCCCCCccccCCEEEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence 3344444443332 222334555566777764443 37899999999999999999999999999999999864
No 12
>PRK11445 putative oxidoreductase; Provisional
Probab=99.97 E-value=3e-29 Score=253.55 Aligned_cols=295 Identities=17% Similarity=0.225 Sum_probs=184.4
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCC---CCCcccc-----hhHhhhhcCchh---hhhhc--cCceE
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLST---WPNNYGV-----WVDEFEDIGLVD---CLDKT--WPMTC 151 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~---~~~~~g~-----~~~~l~~~~~~~---~~~~~--~~~~~ 151 (503)
+|||+||||||||+++|+.|++ . ++|+|||+.+... .+..||. ....|+++|+.. .+... .....
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~-~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~ 78 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAG-K-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKT 78 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhc-c-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeE
Confidence 4899999999999999999999 8 9999999987532 2234554 223466666631 11110 01111
Q ss_pred EEecCCcccccCCCccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEe-CCCc--EEEeceEEecCCCCc
Q 010693 152 VFINDHKTKYLDRPYGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVC-DDGN--EIKASLIVDASGFAS 227 (503)
Q Consensus 152 ~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~-~~g~--~i~a~~vI~A~G~~s 227 (503)
+............++..++|..|++.|.+. .+.|++++ +++|++++.+++++.|.+ ++|+ +++||+||+|||.+|
T Consensus 79 ~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~-~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S 157 (351)
T PRK11445 79 IDLANSLTRNYQRSYINIDRHKFDLWLKSL-IPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANS 157 (351)
T ss_pred ecccccchhhcCCCcccccHHHHHHHHHHH-HhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCc
Confidence 111111111122344459999999999885 46789999 999999998888888875 5664 699999999999999
Q ss_pred ccccccCCCCCccceeEEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCCeEEEecccccCC
Q 010693 228 SFVEYDKPRNHGYQIAHGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNLVFLEETSLVSR 307 (503)
Q Consensus 228 ~vr~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~~v~~~~~~~~ 307 (503)
.+|+.........+ ..++...+......+....+.+. . ...+|.|.+|.++.... +.. .
T Consensus 158 ~vr~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~~-------------~--~~~~~~W~~p~~~~~~~-g~~-~--- 216 (351)
T PRK11445 158 MVRRHLYPDHQIRK-YVAIQQWFAEKHPVPFYSCIFDN-------------E--ITDCYSWSISKDGYFIF-GGA-Y--- 216 (351)
T ss_pred HHhHHhcCCCchhh-EEEEEEEecCCCCCCCcceEEec-------------c--CCCceEEEeCCCCcEEe-ccc-c---
Confidence 99986544322111 22332222221110100011110 1 11468999999765433 211 1
Q ss_pred CCCCHHHHHHHHHHHHhhcCCccceEeecceecccCCCCCC---CCCCCEEEeccCCCCcCCcccHHHHHHHHhHHHHHH
Q 010693 308 PVLSYKEVKRRMAARLRHMGIRVKRVIEDEKCLIPMGGPLP---VIPQSVMAIGSTSGLVHPSTGYMVARTMALAPALAD 384 (503)
Q Consensus 308 ~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~p~~~~~~---~~~~~v~liGDAa~~~~P~~G~G~~~al~~a~~lA~ 384 (503)
+..+..+..+.+.+++...+....++...+.+.++.....+ ...+|++++|||||+++|++|+|++.|+++|..||+
T Consensus 217 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~ 296 (351)
T PRK11445 217 PMKDGRERFETLKEKLSAFGFQFGKPVKTEACTVLRPSRWQDFVCGKDNAFLIGEAAGFISPSSLEGISYALDSARILSE 296 (351)
T ss_pred cccchHHHHHHHHHHHHhcccccccccccccccccCcccccccccCCCCEEEEEcccCccCCccCccHHHHHHhHHHHHH
Confidence 11122233344455555555444444443433333222122 135899999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCchhhHHHHhh
Q 010693 385 AIAECLGSTRMIRGRPLHQKVWNG 408 (503)
Q Consensus 385 ~l~~~l~~~~~~~~l~~y~~~~~~ 408 (503)
.|.+.. ...++.|++.|+.
T Consensus 297 ~l~~~~-----~~~~~~y~~~~~~ 315 (351)
T PRK11445 297 VLNKQP-----EKLNTAYWRKTRK 315 (351)
T ss_pred HHHhcc-----cchHHHHHHHHHH
Confidence 998655 2578899988875
No 13
>PRK08013 oxidoreductase; Provisional
Probab=99.97 E-value=2.7e-29 Score=258.50 Aligned_cols=304 Identities=15% Similarity=0.184 Sum_probs=187.3
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCC-------Cccc---chhHhhhhcCchhhh-hh-ccC--c
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWP-------NNYG---VWVDEFEDIGLVDCL-DK-TWP--M 149 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~-------~~~g---~~~~~l~~~~~~~~~-~~-~~~--~ 149 (503)
.++||+||||||+|+++|+.|++ +|++|+|||+.+..... +..+ .....|+++|+.+.+ .. ... .
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~-~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~ 80 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQG-SGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHG 80 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhh-CCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccE
Confidence 46899999999999999999999 99999999998753211 1111 133567888884443 22 112 2
Q ss_pred eEEEecCC-ccc-----ccCCC-ccc-cCHHHHHHHHHHHHHh-CCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceE
Q 010693 150 TCVFINDH-KTK-----YLDRP-YGR-VSRNILKTKLLENCVS-NGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLI 219 (503)
Q Consensus 150 ~~~~~~~~-~~~-----~~~~~-~~~-v~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~v 219 (503)
..+.-.+. ... ....+ .++ ++|..+.+.|.+.+.+ .|++++ +++|++++.+++.+.|++.+|++++||+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lv 160 (400)
T PRK08013 81 MEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLV 160 (400)
T ss_pred EEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEE
Confidence 22211110 000 11112 233 8899999999999988 489999 99999999888889999999999999999
Q ss_pred EecCCCCcccccccCCCCCccce-eEEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCCe-E
Q 010693 220 VDASGFASSFVEYDKPRNHGYQI-AHGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNL-V 297 (503)
Q Consensus 220 I~A~G~~s~vr~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~-~ 297 (503)
|+|||.+|.+|+..+.......+ ...+...++.. .......... +..+ ++++++|..++. .
T Consensus 161 VgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~-----------~~~~-----g~~~~~p~~~~~~~ 223 (400)
T PRK08013 161 VGADGANSWLRNKADIPLTFWDYQHHALVATIRTE-EPHDAVARQV-----------FHGD-----GILAFLPLSDPHLC 223 (400)
T ss_pred EEeCCCCcHHHHHcCCCccccccCcEEEEEEEecc-CCCCCEEEEE-----------EcCC-----CCEEEEECCCCCeE
Confidence 99999999999976554332211 12222233221 1111111111 1112 356777876542 2
Q ss_pred -EE--ecccccC-CCCCCHHHHHHHHHHHHhhcCCccceEeecceecccCCCCC--CCCCCCEEEeccCCCCcCCcccHH
Q 010693 298 -FL--EETSLVS-RPVLSYKEVKRRMAARLRHMGIRVKRVIEDEKCLIPMGGPL--PVIPQSVMAIGSTSGLVHPSTGYM 371 (503)
Q Consensus 298 -~v--~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~p~~~~~--~~~~~~v~liGDAa~~~~P~~G~G 371 (503)
++ ....... ......+++.+.+...+... +....+. .....+|+.... ....+||+++|||||.++|+.|||
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-l~~~~~~-~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG 301 (400)
T PRK08013 224 SIVWSLSPEEAQRMQQAPEEEFNRALAIAFDNR-LGLCELE-SERQVFPLTGRYARQFAAHRLALVGDAAHTIHPLAGQG 301 (400)
T ss_pred EEEEEcCHHHHHHHHcCCHHHHHHHHHHHHhHh-hCceEec-CCccEEecceeecccccCCcEEEEechhhcCCccccCc
Confidence 21 1111100 01233445555544333211 1101111 112234443322 236799999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHhcCCCCCC---CchhhHHHHh
Q 010693 372 VARTMALAPALADAIAECLGSTRMIR---GRPLHQKVWN 407 (503)
Q Consensus 372 ~~~al~~a~~lA~~l~~~l~~~~~~~---~l~~y~~~~~ 407 (503)
+|+|++||..||+.|...+..+.+.. .++.|++..+
T Consensus 302 ~n~gi~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~ 340 (400)
T PRK08013 302 VNLGFMDAAELIAELRRLHRQGKDIGQHLYLRRYERSRK 340 (400)
T ss_pred hhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 99999999999999998765443222 4788876543
No 14
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.97 E-value=7.9e-29 Score=254.64 Aligned_cols=300 Identities=17% Similarity=0.235 Sum_probs=188.2
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCC-------Cccc---chhHhhhhcCchhhhhh--------
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWP-------NNYG---VWVDEFEDIGLVDCLDK-------- 145 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~-------~~~g---~~~~~l~~~~~~~~~~~-------- 145 (503)
..|||+||||||+|+++|+.|++ .|++|+|||+.+..... +..+ .....++.+|+.+.+..
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~-~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~ 82 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQ-HGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRR 82 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhc-CCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccce
Confidence 45999999999999999999999 99999999987642211 1111 13345677777443321
Q ss_pred ----ccCceEEEecCCcccccCCCccc-cCHHHHHHHHHHHHHhC-CcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEece
Q 010693 146 ----TWPMTCVFINDHKTKYLDRPYGR-VSRNILKTKLLENCVSN-GVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASL 218 (503)
Q Consensus 146 ----~~~~~~~~~~~~~~~~~~~~~~~-v~r~~l~~~L~~~~~~~-gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~ 218 (503)
.|....+.++... .....+++ ++|..+.+.|.+.+.+. |++++ +++|+++..+++.+.|.+++|.+++||+
T Consensus 83 ~~~~~~~~~~~~~~~~~--~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~ 160 (391)
T PRK08020 83 LETWEWETAHVVFDAAE--LKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKL 160 (391)
T ss_pred EEEEeCCCCeEEecccc--cCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCE
Confidence 1222333332211 11123344 89999999999998775 99999 9999999988888889888888999999
Q ss_pred EEecCCCCcccccccCCCCCccce-eEEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCCeE
Q 010693 219 IVDASGFASSFVEYDKPRNHGYQI-AHGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNLV 297 (503)
Q Consensus 219 vI~A~G~~s~vr~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~ 297 (503)
||+|||.+|.+|+..+.......+ ..++...+.... ......+ ..+.++| + ..++|..++..
T Consensus 161 vI~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~~-~~~~~~~-----------~~~~~~g---~--~~~~p~~~~~~ 223 (391)
T PRK08020 161 VIGADGANSQVRQMAGIGVHGWQYRQSCMLISVKCEN-PPGDSTW-----------QQFTPSG---P--RAFLPLFDNWA 223 (391)
T ss_pred EEEeCCCCchhHHHcCCCccccCCCceEEEEEEEecC-CCCCEEE-----------EEEcCCC---C--EEEeECCCCcE
Confidence 999999999999876543322111 123333332211 1111111 1122344 3 34567766533
Q ss_pred ---EEecccccC-CCCCCHHHHHHHHHHHHhhcCCccceEeecceecccCCCCC--CCCCCCEEEeccCCCCcCCcccHH
Q 010693 298 ---FLEETSLVS-RPVLSYKEVKRRMAARLRHMGIRVKRVIEDEKCLIPMGGPL--PVIPQSVMAIGSTSGLVHPSTGYM 371 (503)
Q Consensus 298 ---~v~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~p~~~~~--~~~~~~v~liGDAa~~~~P~~G~G 371 (503)
|........ ....+.+++.+.+.+.++.. ...+.......+|+.... ....+|++++|||||.++|+.|||
T Consensus 224 ~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~pl~~~~~~~~~~~rv~LvGDAAH~~~P~~GqG 300 (391)
T PRK08020 224 SLVWYDSPARIRQLQAMSMAQLQQEIAAHFPAR---LGAVTPVAAGAFPLTRRHALQYVQPGLALVGDAAHTINPLAGQG 300 (391)
T ss_pred EEEEECCHHHHHHHHCCCHHHHHHHHHHHhhhh---ccceEeccccEeecceeehhhhccCcEEEEechhhccCCcccch
Confidence 222111000 01234555555555544322 122222233455654322 236799999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHhcCCCC---CCCchhhHHHH
Q 010693 372 VARTMALAPALADAIAECLGSTRM---IRGRPLHQKVW 406 (503)
Q Consensus 372 ~~~al~~a~~lA~~l~~~l~~~~~---~~~l~~y~~~~ 406 (503)
+|+||+||..||+.|.+....+.+ ...|+.|++..
T Consensus 301 ~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R 338 (391)
T PRK08020 301 VNLGYRDVDALLDVLVNARSYGEAWASEAVLKRYQRRR 338 (391)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 999999999999999987643322 24677776643
No 15
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.97 E-value=8.7e-29 Score=254.34 Aligned_cols=305 Identities=18% Similarity=0.235 Sum_probs=190.6
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCC------Ccccc---hhHhhhhcCchhhhhh--c--cC
Q 010693 82 DRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWP------NNYGV---WVDEFEDIGLVDCLDK--T--WP 148 (503)
Q Consensus 82 ~~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~------~~~g~---~~~~l~~~~~~~~~~~--~--~~ 148 (503)
.+..+||+||||||+|+++|+.|++ +|++|+|||+.+..... +.... ....++.+|+.+.+.. . +.
T Consensus 3 ~~~~~dV~IvGaG~aGl~~A~~La~-~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~ 81 (392)
T PRK08773 3 RRSRRDAVIVGGGVVGAACALALAD-AGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYR 81 (392)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHhc-CCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCccc
Confidence 3567999999999999999999999 99999999998643211 11122 2345778888554432 1 11
Q ss_pred ceEEEecCCc-cc-----cc-CCCccc-cCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceE
Q 010693 149 MTCVFINDHK-TK-----YL-DRPYGR-VSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLI 219 (503)
Q Consensus 149 ~~~~~~~~~~-~~-----~~-~~~~~~-v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~v 219 (503)
...++..+.. .. .. ...+++ +++..+.+.|.+.+.+.|++++ +++|++++.+++.+.|++++|++++||+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~v 161 (392)
T PRK08773 82 RMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALA 161 (392)
T ss_pred EEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEE
Confidence 2222111110 00 01 123344 8899999999999999999999 99999999888888898888889999999
Q ss_pred EecCCCCcccccccCCCCCccce-eEEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCCeEE
Q 010693 220 VDASGFASSFVEYDKPRNHGYQI-AHGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNLVF 298 (503)
Q Consensus 220 I~A~G~~s~vr~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~~ 298 (503)
|+|||.+|.+++..+.......+ ..++...++.. .......+. .+.++| .++++|..++...
T Consensus 162 V~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~-----------~~~~~g-----~~~~lP~~~~~~~ 224 (392)
T PRK08773 162 IAADGAASTLRELAGLPVSRHDYAQRGVVAFVDTE-HPHQATAWQ-----------RFLPTG-----PLALLPFADGRSS 224 (392)
T ss_pred EEecCCCchHHHhhcCCceEEEeccEEEEEEEEcc-CCCCCEEEE-----------EeCCCC-----cEEEEECCCCceE
Confidence 99999999998865543322111 23444333321 111111111 122233 3667788766443
Q ss_pred Eeccc---ccC-CCCCCHHHHHHHHHHHHhhcCCccceEeecceecccCCCCC--CCCCCCEEEeccCCCCcCCcccHHH
Q 010693 299 LEETS---LVS-RPVLSYKEVKRRMAARLRHMGIRVKRVIEDEKCLIPMGGPL--PVIPQSVMAIGSTSGLVHPSTGYMV 372 (503)
Q Consensus 299 v~~~~---~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~p~~~~~--~~~~~~v~liGDAa~~~~P~~G~G~ 372 (503)
+.... ... ....+.+++.+.+.+.+......+.. ......+|+.... ....+||+++|||||.++|+.|||+
T Consensus 225 ~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~ 302 (392)
T PRK08773 225 IVWTLPDAEAERVLALDEAAFSRELTQAFAARLGEVRV--ASPRTAFPLRRQLVQQYVSGRVLTLGDAAHVVHPLAGQGV 302 (392)
T ss_pred EEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhhcCeEe--cCCccEeechhhhhhhhcCCcEEEEechhhcCCCchhchh
Confidence 21110 000 01233445555555555432111111 1112234543222 2367999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHhcCCCC---CCCchhhHHHH
Q 010693 373 ARTMALAPALADAIAECLGSTRM---IRGRPLHQKVW 406 (503)
Q Consensus 373 ~~al~~a~~lA~~l~~~l~~~~~---~~~l~~y~~~~ 406 (503)
|.|++||..||+.|.+.+..+.+ ...|+.|++..
T Consensus 303 n~al~Da~~La~~L~~~~~~~~~~~~~~~l~~y~~~R 339 (392)
T PRK08773 303 NLGLRDVAALQQLVRQAHARRADWAAPHRLQRWARTR 339 (392)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 99999999999999988754322 23566776643
No 16
>PRK10015 oxidoreductase; Provisional
Probab=99.97 E-value=1.4e-28 Score=254.19 Aligned_cols=354 Identities=15% Similarity=0.141 Sum_probs=210.4
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccch--hHhhhhc--Cc--hhhhhhccCceEEEe-cC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVW--VDEFEDI--GL--VDCLDKTWPMTCVFI-ND 156 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~--~~~l~~~--~~--~~~~~~~~~~~~~~~-~~ 156 (503)
.+||||||||||||++||+.|++ .|++|+||||.+..+.+..||.. ...++.+ ++ +..+........+.+ +.
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~-~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~ 82 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMAR-AGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTE 82 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHh-CCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeC
Confidence 46999999999999999999999 99999999998776554444431 1112222 11 111111111111211 11
Q ss_pred Ccc--cc-------cCCCccc-cCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCC
Q 010693 157 HKT--KY-------LDRPYGR-VSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGF 225 (503)
Q Consensus 157 ~~~--~~-------~~~~~~~-v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~ 225 (503)
... .. .....++ +.|..|++.|.+++++.|++++ +++|+++..+++.+.+...++.+++|++||+|+|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~ 162 (429)
T PRK10015 83 ESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGV 162 (429)
T ss_pred CCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCc
Confidence 100 00 0011123 8899999999999999999999 89999998877766544445568999999999999
Q ss_pred CcccccccCCCC--CccceeEEEEEEecCCCCCCCceE-EeeccCCCCCCCcc--cccCCCCCCeEEEEeecCCCeEEEe
Q 010693 226 ASSFVEYDKPRN--HGYQIAHGILAEVESHPFDLDKMV-LMDWRDSHLGNEPY--LRASNLKLPTFLYAMPFDSNLVFLE 300 (503)
Q Consensus 226 ~s~vr~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~--~~~~g~~~~~~~~~~P~~~~~~~v~ 300 (503)
+|.+++..+... .......++...+.. +++.+. ...........+.. ...+| ..++.|++|..+.. .++
T Consensus 163 ~s~v~~~lg~~~~~~~~~~~~gvk~~~~~---~~~~i~~~~~~~~~~g~~w~~~g~~~~g--~~g~G~~~~~~d~v-~vG 236 (429)
T PRK10015 163 NSMLGRSLGMVPASDPHHYAVGVKEVIGL---TPEQINDRFNITGEEGAAWLFAGSPSDG--LMGGGFLYTNKDSI-SLG 236 (429)
T ss_pred chhhhcccCCCcCCCcCeEEEEEEEEEeC---CHHHhhHhhcCCCCCCeEEEecCccCCC--CCCceEEEEcCCcE-EEE
Confidence 999987654422 233334555433321 111110 00000000000000 00111 12345666655543 332
Q ss_pred ccc-c--cCCCCCCHHHHHHHHHHHHhhc--CCccceEeecceecccCCCCC--C-CCCCCEEEeccCCCCcCC--cccH
Q 010693 301 ETS-L--VSRPVLSYKEVKRRMAARLRHM--GIRVKRVIEDEKCLIPMGGPL--P-VIPQSVMAIGSTSGLVHP--STGY 370 (503)
Q Consensus 301 ~~~-~--~~~~~~~~~~~~~~l~~~l~~~--~~~~~~i~~~~~~~~p~~~~~--~-~~~~~v~liGDAa~~~~P--~~G~ 370 (503)
..+ . ......+..++.+.+.. .+.. .+...+..+.....+|.++.. + .+.++++++||||++++| ++|+
T Consensus 237 v~~~~~~~~~~~~~~~~~l~~~~~-~p~~~~~~~~~~~~e~~~~~ip~gg~~~~~~~~~~g~llvGDAAg~v~p~~~~g~ 315 (429)
T PRK10015 237 LVCGLGDIAHAQKSVPQMLEDFKQ-HPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLVNDGVMIVGDAAGFCLNLGFTVR 315 (429)
T ss_pred EEEehhhhccCCCCHHHHHHHHhh-ChHHHHHhcCCEEEEEeeEEcccCCcccCCccccCCeEEEecccccccccCcccc
Confidence 211 1 01123345555555532 1111 011234455567788987653 3 378999999999999995 6999
Q ss_pred HHHHHHHhHHHHHHHHHHHhcCCC-CCCCchhhHHHHhhcC-cHHHHHHHHHHHHhHH-HHhCCChhhHHHHHHHHcc
Q 010693 371 MVARTMALAPALADAIAECLGSTR-MIRGRPLHQKVWNGLW-PIDRRCNREFYSFGME-TLLKLDLKGTRRFFDAFFD 445 (503)
Q Consensus 371 G~~~al~~a~~lA~~l~~~l~~~~-~~~~l~~y~~~~~~~~-~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~f~~~~~ 445 (503)
||..||.+|..+|+++.++++.++ +...|..|++.|++.| ..+.+..+.+.++..+ .++..-++...+++..+|+
T Consensus 316 Gi~~A~~SG~~AAe~i~~a~~~~d~s~~~l~~Y~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (429)
T PRK10015 316 GMDLAIASAQAAATTVIAAKERADFSASSLAQYKRELEQSCVMRDMQHFRKIPALMENPRLFSQYPRMVADIMNDMFT 393 (429)
T ss_pred chhHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHCHHHHHHHHHhChHhhhcCccHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999998655 5678999999999874 3335555555443221 1222334455566667775
No 17
>PRK06184 hypothetical protein; Provisional
Probab=99.97 E-value=9.1e-29 Score=261.83 Aligned_cols=305 Identities=19% Similarity=0.226 Sum_probs=192.0
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCC-CCCcccch---hHhhhhcCchhh-hhhc--cCceEEEecC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLST-WPNNYGVW---VDEFEDIGLVDC-LDKT--WPMTCVFIND 156 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~-~~~~~g~~---~~~l~~~~~~~~-~~~~--~~~~~~~~~~ 156 (503)
.++||+||||||+||++|+.|++ +|++|+||||.+... .++..+.+ ++.|+.+|+.+. .... +....++..+
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~-~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~ 80 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELAR-RGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDD 80 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-CCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCC
Confidence 46999999999999999999999 999999999986543 23333443 345788888443 3221 2222222111
Q ss_pred Ccc----------cccCCCc--c-ccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEe---CCCcEEEeceE
Q 010693 157 HKT----------KYLDRPY--G-RVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVC---DDGNEIKASLI 219 (503)
Q Consensus 157 ~~~----------~~~~~~~--~-~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~---~~g~~i~a~~v 219 (503)
... .....++ . .+.+..+++.|.+.+.+.|++++ +++|++++.+++.+.+++ .++++++||+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~v 160 (502)
T PRK06184 81 GSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYL 160 (502)
T ss_pred ceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEE
Confidence 110 0011122 2 27889999999999988999999 999999998888887777 55668999999
Q ss_pred EecCCCCcccccccCCCCCcccee--EEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCCeE
Q 010693 220 VDASGFASSFVEYDKPRNHGYQIA--HGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNLV 297 (503)
Q Consensus 220 I~A~G~~s~vr~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~ 297 (503)
|+|||.+|.+|+..+....+..+. ..+...+............ | ...+ .+.+.++|..++..
T Consensus 161 VgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~-----------~~~~---~~~~~~~p~~~~~~ 224 (502)
T PRK06184 161 VGADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTGLDRDAWHQ--W-----------PDGD---MGMIALCPLPGTDL 224 (502)
T ss_pred EECCCCchHHHHhCCCCcccCcCCCceEEEEEEEeecCCCcceEE--c-----------cCCC---CcEEEEEEccCCCe
Confidence 999999999999766543322211 1122222111111111111 1 1111 13455667664422
Q ss_pred E-Eecc-cccCCCCCCHHHHHHHHHHHHhhcCCccceEeecceecccCCCCC--CCCCCCEEEeccCCCCcCCcccHHHH
Q 010693 298 F-LEET-SLVSRPVLSYKEVKRRMAARLRHMGIRVKRVIEDEKCLIPMGGPL--PVIPQSVMAIGSTSGLVHPSTGYMVA 373 (503)
Q Consensus 298 ~-v~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~p~~~~~--~~~~~~v~liGDAa~~~~P~~G~G~~ 373 (503)
| +... ........+.+.+.+.+..++....+....+. ....+++.... ....+||+++|||||.++|+.|||+|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n 302 (502)
T PRK06184 225 FQIQAPLPPGGEPDLSADGLTALLAERTGRTDIRLHSVT--WASAFRMNARLADRYRVGRVFLAGDAAHVHPPAGGQGLN 302 (502)
T ss_pred EEEEEEcCCCccCCCCHHHHHHHHHHhcCCCCcceeeee--eeeccccceeEhhhhcCCcEEEeccccccCCCccccccc
Confidence 2 1111 11111234566777766665542222221111 12233332221 12579999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHhcCCCCCCCchhhHHHHhh
Q 010693 374 RTMALAPALADAIAECLGSTRMIRGRPLHQKVWNG 408 (503)
Q Consensus 374 ~al~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~ 408 (503)
++|+||..||+.|+..+++ .....|+.|+...+.
T Consensus 303 ~gi~DA~~LawkLa~vl~g-~~~~lL~~Ye~eR~p 336 (502)
T PRK06184 303 TSVQDAYNLGWKLAAVLAG-APEALLDTYEEERRP 336 (502)
T ss_pred chHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHH
Confidence 9999999999999988876 445679999887664
No 18
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.97 E-value=6.3e-29 Score=255.08 Aligned_cols=305 Identities=14% Similarity=0.174 Sum_probs=193.4
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccch---hHhhhhcCchhhh-hhc--cCceEEEecC
Q 010693 83 RIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVW---VDEFEDIGLVDCL-DKT--WPMTCVFIND 156 (503)
Q Consensus 83 ~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~---~~~l~~~~~~~~~-~~~--~~~~~~~~~~ 156 (503)
+..+||+||||||+|+++|+.|++ +|++|+|||+.+.....+.++.+ ...++++|+.+.+ ... +....++..+
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~-~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~ 83 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALAR-AGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDAT 83 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhc-CCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCC
Confidence 456899999999999999999999 99999999998765444444433 3457778874433 222 2222222222
Q ss_pred Ccc-----cc------cCCCccc-cCHHHHHHHHHHHHHhC-CcEEEEeEEEEEEEeCCEEEEEeCCCcEEEeceEEecC
Q 010693 157 HKT-----KY------LDRPYGR-VSRNILKTKLLENCVSN-GVKFHKAKVWHVNHQEFESSIVCDDGNEIKASLIVDAS 223 (503)
Q Consensus 157 ~~~-----~~------~~~~~~~-v~r~~l~~~L~~~~~~~-gv~~~~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~ 223 (503)
+.. .. -..++++ +++..+.+.|.+.+.+. ++...+++|++++.+++.+.|++++|++++||+||+||
T Consensus 84 g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~Ad 163 (388)
T PRK07494 84 GRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPREDEVTVTLADGTTLSARLVVGAD 163 (388)
T ss_pred CCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEec
Confidence 110 00 1124455 88999999999998875 46644999999998888899999889899999999999
Q ss_pred CCCcccccccCCCCCccc-eeEEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCCeE---EE
Q 010693 224 GFASSFVEYDKPRNHGYQ-IAHGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNLV---FL 299 (503)
Q Consensus 224 G~~s~vr~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~---~v 299 (503)
|.+|.+|+..+....... ....+...+.. +........ .+ +.+.| +++++|..++.. |.
T Consensus 164 G~~S~vr~~~g~~~~~~~~~~~~~~~~v~~-~~~~~~~~~-~~----------~~~~g-----~~~~~Pl~~~~~~~v~~ 226 (388)
T PRK07494 164 GRNSPVREAAGIGVRTWSYPQKALVLNFTH-SRPHQNVST-EF----------HTEGG-----PFTQVPLPGRRSSLVWV 226 (388)
T ss_pred CCCchhHHhcCCCceecCCCCEEEEEEEec-cCCCCCEEE-EE----------eCCCC-----cEEEEECCCCcEEEEEE
Confidence 999999987554322111 11233333331 111111100 01 12233 466678775543 22
Q ss_pred ecccccC-CCCCCHHHHHHHHHHHHhhcCCccceEeecceecccCCCCCC--CCCCCEEEeccCCCCcCCcccHHHHHHH
Q 010693 300 EETSLVS-RPVLSYKEVKRRMAARLRHMGIRVKRVIEDEKCLIPMGGPLP--VIPQSVMAIGSTSGLVHPSTGYMVARTM 376 (503)
Q Consensus 300 ~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~p~~~~~~--~~~~~v~liGDAa~~~~P~~G~G~~~al 376 (503)
....... ....+.+++.+.+.+.++..-... . .......+|+..... ...+||+++|||||.++|++|||+|.++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~-~~~~~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~~l 304 (388)
T PRK07494 227 VRPAEAERLLALSDAALSAAIEERMQSMLGKL-T-LEPGRQAWPLSGQVAHRFAAGRTALVGEAAHVFPPIGAQGLNLGL 304 (388)
T ss_pred CCHHHHHHHHcCCHHHHHHHHHHHHhhhcCCe-E-EccCCcEeechHHHHHhhccCceEEEEhhhhcCCchhhcccchhH
Confidence 2211111 123456677777766665431111 1 112334556543322 2679999999999999999999999999
Q ss_pred HhHHHHHHHHHHHhcCCCCCCCchhhHHHHh
Q 010693 377 ALAPALADAIAECLGSTRMIRGRPLHQKVWN 407 (503)
Q Consensus 377 ~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~ 407 (503)
+||..||+.|............++.|++.++
T Consensus 305 ~Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~ 335 (388)
T PRK07494 305 RDVATLVEIVEDRPEDPGSAAVLAAYDRARR 335 (388)
T ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 9999999999874322222356788877655
No 19
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.97 E-value=8.9e-29 Score=252.39 Aligned_cols=294 Identities=16% Similarity=0.162 Sum_probs=183.6
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCC-----CCCcccch---hHhhhhcCchhhhhh-ccC--ceEEE
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLST-----WPNNYGVW---VDEFEDIGLVDCLDK-TWP--MTCVF 153 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~-----~~~~~g~~---~~~l~~~~~~~~~~~-~~~--~~~~~ 153 (503)
.+||+||||||+|+++|+.|++ .|++|+|+|+.+... ..+..+.+ ...|+.+|+.+.+.. ..+ ...+.
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~-~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 79 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQ-KGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVV 79 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHc-CCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEE
Confidence 4799999999999999999999 999999999874321 12223333 235778887443322 212 12221
Q ss_pred ecCCcc-ccc----CCCccc-cCHHHHHHHHHHHHHhCC-cEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCC
Q 010693 154 INDHKT-KYL----DRPYGR-VSRNILKTKLLENCVSNG-VKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGF 225 (503)
Q Consensus 154 ~~~~~~-~~~----~~~~~~-v~r~~l~~~L~~~~~~~g-v~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~ 225 (503)
...+.. ..+ ..++++ +.|..|.+.|.+++.+.+ ++++ +++++++..+++.+.|.++++ +++||+||+|||.
T Consensus 80 ~~~g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~ 158 (374)
T PRK06617 80 DNKASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGA 158 (374)
T ss_pred ECCCceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCC
Confidence 111110 011 123455 899999999999998864 8888 999999998888888988776 8999999999999
Q ss_pred CcccccccCCCCCccceeEEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCCe-E-EEeccc
Q 010693 226 ASSFVEYDKPRNHGYQIAHGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNL-V-FLEETS 303 (503)
Q Consensus 226 ~s~vr~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~-~-~v~~~~ 303 (503)
+|.+|+..........+..++...+.... ...... +..|.+.| + ++++|..++. . ++-...
T Consensus 159 ~S~vR~~l~~~~~~~~y~~~~~~~v~~~~-~~~~~~-----------~~~~~~~g---~--~~~lPl~~~~~~~~vw~~~ 221 (374)
T PRK06617 159 NSKVRSHYFANEIEKPYQTALTFNIKHEK-PHENCA-----------MEHFLPLG---P--FALLPLKDQYASSVIWSTS 221 (374)
T ss_pred CchhHHhcCCCcccccCCeEEEEEEeccC-CCCCEE-----------EEEecCCC---C--EEEeECCCCCeEEEEEeCC
Confidence 99999876544322222233333433211 111111 11233355 4 7788988763 2 221111
Q ss_pred --ccC-CCCCCHHHHHHHHHHHHhhcCCccceE-eecceecccCCCCC--CCCCCCEEEeccCCCCcCCcccHHHHHHHH
Q 010693 304 --LVS-RPVLSYKEVKRRMAARLRHMGIRVKRV-IEDEKCLIPMGGPL--PVIPQSVMAIGSTSGLVHPSTGYMVARTMA 377 (503)
Q Consensus 304 --~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~i-~~~~~~~~p~~~~~--~~~~~~v~liGDAa~~~~P~~G~G~~~al~ 377 (503)
... ....+.+.+.+.+...+.. ....+ ...+...+|+.... ..+.+||+++|||||.++|..|||+|+||+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gl~ 298 (374)
T PRK06617 222 SDQAALIVNLPVEEVRFLTQRNAGN---SLGKITIDSEISSFPLKARIANRYFHNRIVLIADTAHTVHPLAGQGLNQGIK 298 (374)
T ss_pred HHHHHHHHcCCHHHHHHHHHHhhch---hcCceeeccceeEEEeeeeeccceecCCEEEEEcccccCCCCccccHHHHHH
Confidence 000 0122334444433333221 11222 12234455654322 236799999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCCCchhhHHHHh
Q 010693 378 LAPALADAIAECLGSTRMIRGRPLHQKVWN 407 (503)
Q Consensus 378 ~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~ 407 (503)
||..|++.|.. ...|+.|++.++
T Consensus 299 Da~~La~~L~~-------~~~L~~Ye~~R~ 321 (374)
T PRK06617 299 DIEILSMIVSN-------NGTLQEYQKLRQ 321 (374)
T ss_pred HHHHHHHHHcC-------cchHHHHHHHHh
Confidence 99999988731 257888887544
No 20
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.97 E-value=1.2e-28 Score=255.43 Aligned_cols=306 Identities=17% Similarity=0.217 Sum_probs=186.5
Q ss_pred CCCCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCC---Ccccc---hhHhhhhcCchhhhh-hccCceEEE
Q 010693 81 SDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWP---NNYGV---WVDEFEDIGLVDCLD-KTWPMTCVF 153 (503)
Q Consensus 81 ~~~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~---~~~g~---~~~~l~~~~~~~~~~-~~~~~~~~~ 153 (503)
+....+||+||||||||+++|+.|++ +|++|+|||+.+..... +.++. ....|+.+|+.+.+. .......+.
T Consensus 14 ~~~~~~dV~IvGaG~aGl~~A~~L~~-~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~ 92 (415)
T PRK07364 14 TRSLTYDVAIVGGGIVGLTLAAALKD-SGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIR 92 (415)
T ss_pred CCccccCEEEECcCHHHHHHHHHHhc-CCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEE
Confidence 45557999999999999999999999 99999999998764321 22222 334578888844333 211211111
Q ss_pred e-cCCc--cc-----cc-CCCccc-cCHHHHHHHHHHHHHh-CCcEEE-EeEEEEEEEeCCEEEEEeCC-C--cEEEece
Q 010693 154 I-NDHK--TK-----YL-DRPYGR-VSRNILKTKLLENCVS-NGVKFH-KAKVWHVNHQEFESSIVCDD-G--NEIKASL 218 (503)
Q Consensus 154 ~-~~~~--~~-----~~-~~~~~~-v~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~~~~~~v~~~~-g--~~i~a~~ 218 (503)
+ +... .. .. ...+++ +.++.+.+.|.+.+.+ .|++++ +++|++++.+++.+.|++.+ + .+++||+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adl 172 (415)
T PRK07364 93 LSDADYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKL 172 (415)
T ss_pred EEeCCCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeE
Confidence 1 1110 00 01 112233 4455788889888877 479999 99999999888888888764 2 3699999
Q ss_pred EEecCCCCcccccccCCCCCccceeE-EEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCCeE
Q 010693 219 IVDASGFASSFVEYDKPRNHGYQIAH-GILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNLV 297 (503)
Q Consensus 219 vI~A~G~~s~vr~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~ 297 (503)
||+|||.+|.+|+..+....++.+.. .+...+.. +.......+. .+.+.+ +++++|..++..
T Consensus 173 vIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----------~~~~~g-----~~~~~p~~~~~~ 235 (415)
T PRK07364 173 VVAADGARSPIRQAAGIKTKGWKYWQSCVTATVKH-EAPHNDIAYE-----------RFWPSG-----PFAILPLPGNRC 235 (415)
T ss_pred EEEeCCCCchhHHHhCCCceeecCCCEEEEEEEEc-cCCCCCEEEE-----------EecCCC-----CeEEeECCCCCE
Confidence 99999999999987655433332221 12222221 1111111110 112233 467888887653
Q ss_pred EEec--ccc--cCCCCCCHHHHHHHHHHHHhhcCCccceEeecceecccCCCCC--CCCCCCEEEeccCCCCcCCcccHH
Q 010693 298 FLEE--TSL--VSRPVLSYKEVKRRMAARLRHMGIRVKRVIEDEKCLIPMGGPL--PVIPQSVMAIGSTSGLVHPSTGYM 371 (503)
Q Consensus 298 ~v~~--~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~p~~~~~--~~~~~~v~liGDAa~~~~P~~G~G 371 (503)
.+.. +.. ......+.+++.+.+.+.+........ .. .....+|+.... ....+|++++|||||.++|++|||
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG 313 (415)
T PRK07364 236 QIVWTAPHAQAKALLALPEAEFLAELQQRYGDQLGKLE-LL-GDRFLFPVQLMQSDRYVQHRLALVGDAAHCCHPVGGQG 313 (415)
T ss_pred EEEEECCHHHHHHHHCCCHHHHHHHHHHHhhhhhcCce-ec-CCCceecchhhhhhhhcCCcEEEEecccccCCCccccc
Confidence 3221 100 000123445666666655544321111 11 122334443221 236789999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHhcCCCC---CCCchhhHHHH
Q 010693 372 VARTMALAPALADAIAECLGSTRM---IRGRPLHQKVW 406 (503)
Q Consensus 372 ~~~al~~a~~lA~~l~~~l~~~~~---~~~l~~y~~~~ 406 (503)
+++||+||..||++|...+..+.+ ...++.|++..
T Consensus 314 ~n~al~DA~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R 351 (415)
T PRK07364 314 LNLGIRDAAALAQVLQTAHQRGEDIGSLAVLKRYERWR 351 (415)
T ss_pred HhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 999999999999999987643322 24677787743
No 21
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.97 E-value=8.8e-29 Score=255.31 Aligned_cols=299 Identities=21% Similarity=0.294 Sum_probs=189.1
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCC--CcEEEEcCCCCCCC---CCcccc---hhHhhhhcCchhhhh-hccCceEEEec
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHS--VKVCCVDPSPLSTW---PNNYGV---WVDEFEDIGLVDCLD-KTWPMTCVFIN 155 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G--~~V~viE~~~~~~~---~~~~g~---~~~~l~~~~~~~~~~-~~~~~~~~~~~ 155 (503)
.|||+||||||+|+++|+.|++ +| ++|+|||+.+.... ++..+. ....++.+|+.+.+. .......+.+.
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~-~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 79 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQ-AAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVIT 79 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhc-CCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEE
Confidence 4899999999999999999999 85 99999999875322 122222 234578888854432 22222222211
Q ss_pred C--Cc------------ccccCCCccc-cCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceE
Q 010693 156 D--HK------------TKYLDRPYGR-VSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLI 219 (503)
Q Consensus 156 ~--~~------------~~~~~~~~~~-v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~v 219 (503)
+ .. ......++++ +++..+.+.|.+.+.+.|++++ +++|++++.+++.+.|++.+|.+++||+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~v 159 (403)
T PRK07333 80 DSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLL 159 (403)
T ss_pred eCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEE
Confidence 1 00 0001234443 8999999999999998999999 99999999888889999989989999999
Q ss_pred EecCCCCcccccccCCCCCccc-eeEEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCCeEE
Q 010693 220 VDASGFASSFVEYDKPRNHGYQ-IAHGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNLVF 298 (503)
Q Consensus 220 I~A~G~~s~vr~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~~ 298 (503)
|+|||.+|.+++..+....... ...++...+... ......... .+.++ +++|++|.+++...
T Consensus 160 I~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----------~~~~~-----g~~~~~Pl~~~~~~ 222 (403)
T PRK07333 160 VAADGARSKLRELAGIKTVGWDYGQSGIVCTVEHE-RPHGGRAEE-----------HFLPA-----GPFAILPLKGNRSS 222 (403)
T ss_pred EEcCCCChHHHHHcCCCcccccCCCEEEEEEEEcC-CCCCCEEEE-----------EeCCC-----CceEEeECCCCCeE
Confidence 9999999999987654332211 123333333221 111111111 12223 35788899887653
Q ss_pred EecccccC---C-CCCCHHHHHHHHHHHHhhcCCccceEe-ecceecccCCCCC--CCCCCCEEEeccCCCCcCCcccHH
Q 010693 299 LEETSLVS---R-PVLSYKEVKRRMAARLRHMGIRVKRVI-EDEKCLIPMGGPL--PVIPQSVMAIGSTSGLVHPSTGYM 371 (503)
Q Consensus 299 v~~~~~~~---~-~~~~~~~~~~~l~~~l~~~~~~~~~i~-~~~~~~~p~~~~~--~~~~~~v~liGDAa~~~~P~~G~G 371 (503)
+....... . ...+.+.+.+.+.+.+... ...+. ......+|+.... ....+||+++|||||.++|++|||
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG 299 (403)
T PRK07333 223 LVWTERTADAERLVALDDLVFEAELEQRFGHR---LGELKVLGKRRAFPLGLTLARSFVAPRFALVGDAAHGIHPIAGQG 299 (403)
T ss_pred EEEECCHHHHHHHHCCCHHHHHHHHHHHhhhh---cCceEeccCccEeechhhhhhhccCCCEEEEechhhcCCCccccc
Confidence 32110000 0 1122333444444444321 11111 1112234443222 226799999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHhcCC---CCCCCchhhHH
Q 010693 372 VARTMALAPALADAIAECLGST---RMIRGRPLHQK 404 (503)
Q Consensus 372 ~~~al~~a~~lA~~l~~~l~~~---~~~~~l~~y~~ 404 (503)
+++||+||..||+.|...++.+ .....++.|++
T Consensus 300 ~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Ye~ 335 (403)
T PRK07333 300 LNLGLKDVAALAEVVVEAARLGLDIGSLDVLERYQR 335 (403)
T ss_pred hhhhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 9999999999999999887532 13467888886
No 22
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.97 E-value=1.7e-29 Score=255.42 Aligned_cols=302 Identities=20% Similarity=0.224 Sum_probs=178.5
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCC-Ccccc---hhHhhhhcCchhhhhh-c--cCceEEEecCC
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWP-NNYGV---WVDEFEDIGLVDCLDK-T--WPMTCVFINDH 157 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~-~~~g~---~~~~l~~~~~~~~~~~-~--~~~~~~~~~~~ 157 (503)
.|||+||||||+|+++|+.|++ +|++|+||||.+..... ...+. ....|+.+|+.+.+.. . .......+...
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~-~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~ 79 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALAR-AGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDG 79 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHH-TTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEE
T ss_pred CceEEEECCCHHHHHHHHHHHh-cccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecc
Confidence 4899999999999999999999 99999999998765332 22221 3445778888543332 2 11111111111
Q ss_pred ------------ccc----ccCCCcc-ccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCC---Cc--EE
Q 010693 158 ------------KTK----YLDRPYG-RVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDD---GN--EI 214 (503)
Q Consensus 158 ------------~~~----~~~~~~~-~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~---g~--~i 214 (503)
... ....+.. .++|..+.+.|.+.+++.|++++ +++|++++.+++++.+.+.+ |+ ++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i 159 (356)
T PF01494_consen 80 ISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETI 159 (356)
T ss_dssp TTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEE
T ss_pred cCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEE
Confidence 001 1112222 37899999999999999899999 99999999998877665533 32 69
Q ss_pred EeceEEecCCCCcccccccCCCCCccc-----eeEEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEE
Q 010693 215 KASLIVDASGFASSFVEYDKPRNHGYQ-----IAHGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYA 289 (503)
Q Consensus 215 ~a~~vI~A~G~~s~vr~~~~~~~~~~~-----~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~ 289 (503)
+||+||+|||.+|.+|+.......... .+.++........+..+ ..+.. . .. ..++++
T Consensus 160 ~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------------~-~~---~~~~~~ 222 (356)
T PF01494_consen 160 EADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFDSDLSDPWED-HCFIY------------S-PP---SGGFAI 222 (356)
T ss_dssp EESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEECHSHTTTSC-EEEEE------------E-ET---TEEEEE
T ss_pred EEeeeecccCcccchhhhccccccCcccccccccccccccccccccccc-ccccc------------c-cc---ccceeE
Confidence 999999999999999997665422221 11222222211111111 11111 0 11 245688
Q ss_pred eecCC-CeE--EEecccccCCCCCC----HHHHHHHHHHHHhhcCCccceEeecceecccCC--CCCCCCCCCEEEeccC
Q 010693 290 MPFDS-NLV--FLEETSLVSRPVLS----YKEVKRRMAARLRHMGIRVKRVIEDEKCLIPMG--GPLPVIPQSVMAIGST 360 (503)
Q Consensus 290 ~P~~~-~~~--~v~~~~~~~~~~~~----~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~p~~--~~~~~~~~~v~liGDA 360 (503)
+|..+ +.. ++............ .+.+.+.+...+....... .+... ..+++. ...+...+||+++|||
T Consensus 223 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~grv~LiGDA 299 (356)
T PF01494_consen 223 IPLENGDRSRFVWFLPFDESKEERPEEFSPEELFANLPEIFGPDLLET-EIDEI--SAWPIPQRVADRWVKGRVLLIGDA 299 (356)
T ss_dssp EEETTTTEEEEEEEEETTTTTCCSTHCHHHHHHHHHHHHHHHTCHHHH-EEEEE--EEEEEEEEEESSSEETTEEE-GGG
T ss_pred eeccCCccceEEEeeecccccccccccccccccccccccccccccccc-ccccc--cccccccccccccccceeEEeccc
Confidence 88887 322 22221111111222 2333333333332211111 22221 222321 1122356899999999
Q ss_pred CCCcCCcccHHHHHHHHhHHHHHHHHHHHhcCCCCCCCchhhHHHHh
Q 010693 361 SGLVHPSTGYMVARTMALAPALADAIAECLGSTRMIRGRPLHQKVWN 407 (503)
Q Consensus 361 a~~~~P~~G~G~~~al~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~ 407 (503)
||.++|++|+|++.||+||..||+.|....++......++.|++.++
T Consensus 300 Ah~~~P~~GqG~n~Ai~da~~La~~L~~~~~g~~~~~~l~~Y~~~r~ 346 (356)
T PF01494_consen 300 AHAMDPFSGQGINMAIEDAAALAELLAAALKGEASEEALKAYEQERR 346 (356)
T ss_dssp TEEE-CCTSHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHH
T ss_pred eeeecccccCCCCcccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999875544556788877654
No 23
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.97 E-value=7.9e-29 Score=255.75 Aligned_cols=302 Identities=17% Similarity=0.239 Sum_probs=186.4
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCC---------CCCcccc---hhHhhhhcCchhhhhh--ccCce
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLST---------WPNNYGV---WVDEFEDIGLVDCLDK--TWPMT 150 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~---------~~~~~g~---~~~~l~~~~~~~~~~~--~~~~~ 150 (503)
.+||+||||||+|+++|+.|++ +|++|+|||+.+... .++.... ....|+.+|+.+.+.. ..+..
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~-~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~ 80 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQG-SGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYS 80 (405)
T ss_pred CccEEEECccHHHHHHHHHHhc-CCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccce
Confidence 5899999999999999999999 999999999986310 1111121 3345788888554432 11211
Q ss_pred EEEe-cCCcc--c-----ccC-CCccc-cCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceE
Q 010693 151 CVFI-NDHKT--K-----YLD-RPYGR-VSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLI 219 (503)
Q Consensus 151 ~~~~-~~~~~--~-----~~~-~~~~~-v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~v 219 (503)
.+.+ +.... . ... ..+++ +++..+.+.|.+.+.+.|++++ +++|++++.+++.+.|++.+|++++||+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~v 160 (405)
T PRK05714 81 EMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLV 160 (405)
T ss_pred eEEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEE
Confidence 2221 11111 0 011 12334 7889999999999988899999 99999999888888899999989999999
Q ss_pred EecCCCCcccccccCCCCCcccee-EEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCC---
Q 010693 220 VDASGFASSFVEYDKPRNHGYQIA-HGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSN--- 295 (503)
Q Consensus 220 I~A~G~~s~vr~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~--- 295 (503)
|+|||.+|.+|+..+.....+.+. ..+...+.... ......++ .+.+.+ .++++|..++
T Consensus 161 VgAdG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----------~~~~~g-----~~~~~P~~~~~~~ 223 (405)
T PRK05714 161 VAADGANSAVRRLAGCATREWDYLHHAIVTSVRCSE-PHRATAWQ-----------RFTDDG-----PLAFLPLERDGDE 223 (405)
T ss_pred EEecCCCchhHHhcCCCcccccCCceEEEEEEEcCC-CCCCEEEE-----------EcCCCC-----CeEEeeCCCCCCC
Confidence 999999999999765543322211 22222222111 11111111 122233 3667787532
Q ss_pred -eE---EEecccccC-CCCCCHHHHHHHHHHHHhhcCCccceEe-ecceecccCCCCC--CCCCCCEEEeccCCCCcCCc
Q 010693 296 -LV---FLEETSLVS-RPVLSYKEVKRRMAARLRHMGIRVKRVI-EDEKCLIPMGGPL--PVIPQSVMAIGSTSGLVHPS 367 (503)
Q Consensus 296 -~~---~v~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~i~-~~~~~~~p~~~~~--~~~~~~v~liGDAa~~~~P~ 367 (503)
.+ |........ ....+.+++.+.+.+.+... ...+. ......+|+.... ....+||+++|||||.++|+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~rv~LlGDAAH~~~P~ 300 (405)
T PRK05714 224 HWCSIVWSTTPEEAERLMALDDDAFCAALERAFEGR---LGEVLSADPRLCVPLRQRHAKRYVEPGLALIGDAAHTIHPL 300 (405)
T ss_pred CeEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHH---hCCceecCCccEEecceeehhhhccCCEEEEEeccccCCCc
Confidence 11 211110000 01234455555555544321 11111 1122334543322 22679999999999999999
Q ss_pred ccHHHHHHHHhHHHHHHHHHHHhcCCC---CCCCchhhHHHHh
Q 010693 368 TGYMVARTMALAPALADAIAECLGSTR---MIRGRPLHQKVWN 407 (503)
Q Consensus 368 ~G~G~~~al~~a~~lA~~l~~~l~~~~---~~~~l~~y~~~~~ 407 (503)
.|||+|+||+||..||+.|..+...+. ....++.|++.++
T Consensus 301 ~GQG~n~al~DA~~La~~L~~~~~~g~~~~~~~~L~~Ye~~R~ 343 (405)
T PRK05714 301 AGQGVNLGFLDAAVLAEVLLHAAERGERLADVRVLSRFERRRM 343 (405)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 999999999999999999988764332 1246788877554
No 24
>PRK08244 hypothetical protein; Provisional
Probab=99.97 E-value=7.7e-28 Score=254.31 Aligned_cols=303 Identities=16% Similarity=0.156 Sum_probs=193.0
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCC-CCCcccc---hhHhhhhcCchhhh-hhc--cCceEEEecCC
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLST-WPNNYGV---WVDEFEDIGLVDCL-DKT--WPMTCVFINDH 157 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~-~~~~~g~---~~~~l~~~~~~~~~-~~~--~~~~~~~~~~~ 157 (503)
++||+||||||+||++|+.|++ +|++|+||||.+... .++..+. ..+.|+.+|+.+.+ ... +....+.....
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~-~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 80 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELAL-AGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDT 80 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccc
Confidence 4899999999999999999999 999999999987542 2333333 34457888884433 322 22222211111
Q ss_pred cc--c--ccCCCccc-cCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeC--CC-cEEEeceEEecCCCCcc
Q 010693 158 KT--K--YLDRPYGR-VSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCD--DG-NEIKASLIVDASGFASS 228 (503)
Q Consensus 158 ~~--~--~~~~~~~~-v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~--~g-~~i~a~~vI~A~G~~s~ 228 (503)
.. . ....++.. +.+..+++.|.+.+.+.|++++ +++|++++.+++++.+.+. +| ++++||+||+|||.+|.
T Consensus 81 ~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~ 160 (493)
T PRK08244 81 RLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSI 160 (493)
T ss_pred cCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChH
Confidence 00 0 11123333 7899999999999988999999 9999999988888777664 45 47999999999999999
Q ss_pred cccccCCCCCccc-eeEEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCCeEEEec--ccc-
Q 010693 229 FVEYDKPRNHGYQ-IAHGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNLVFLEE--TSL- 304 (503)
Q Consensus 229 vr~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~~v~~--~~~- 304 (503)
+|+..+....+.. ...++...+............ .+.++ ++++++|.+++...+.. ...
T Consensus 161 vR~~lgi~~~g~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~-----g~~~~~P~~~~~~~~~~~~~~~~ 223 (493)
T PRK08244 161 VRKQAGIAFPGTDATFTAMLGDVVLKDPPPSSVLS------------LCTRE-----GGVMIVPLSGGIYRVLIIDPERP 223 (493)
T ss_pred HHHhcCCCccCCCcceEEEEEEEEecCCCCcceeE------------EEeCC-----ceEEEEECCCCeEEEEEEcCCcc
Confidence 9987654322211 112222222111111111110 11122 46889999887643221 111
Q ss_pred --cCCCCCCHHHHHHHHHHHHhhcCCccceEeecceecccCCCCC--CCCCCCEEEeccCCCCcCCcccHHHHHHHHhHH
Q 010693 305 --VSRPVLSYKEVKRRMAARLRHMGIRVKRVIEDEKCLIPMGGPL--PVIPQSVMAIGSTSGLVHPSTGYMVARTMALAP 380 (503)
Q Consensus 305 --~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~p~~~~~--~~~~~~v~liGDAa~~~~P~~G~G~~~al~~a~ 380 (503)
......+.+++.+.+.+.+... ....... ....++..... ....+||+++|||||.++|++|||+|++|+||.
T Consensus 224 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~--~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~ 300 (493)
T PRK08244 224 QVPKDEPVTLEELKTSLIRICGTD-FGLNDPV--WMSRFGNATRQAERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQDAM 300 (493)
T ss_pred cccCCCCCCHHHHHHHHHHhhCCC-CCcCCee--EEEecccceeeHhhhccCcEEEeecceeccCCccccccccchhhHH
Confidence 1112345677777766655321 1111111 11122222111 225789999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCchhhHHHHhh
Q 010693 381 ALADAIAECLGSTRMIRGRPLHQKVWNG 408 (503)
Q Consensus 381 ~lA~~l~~~l~~~~~~~~l~~y~~~~~~ 408 (503)
.||+.|+..+++......|+.|++..+.
T Consensus 301 ~La~~La~~l~g~~~~~lL~~Ye~eR~~ 328 (493)
T PRK08244 301 NLGWKLAAAIKGWAPDWLLDSYHAERHP 328 (493)
T ss_pred HHHHHHHHHHcCCCCchhhhhhHHHHHH
Confidence 9999999988665555689999886553
No 25
>PRK09126 hypothetical protein; Provisional
Probab=99.97 E-value=1.2e-28 Score=253.25 Aligned_cols=305 Identities=16% Similarity=0.198 Sum_probs=188.1
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCC--CCCcccc-------hhHhhhhcCchhhhhh-c-cC--c
Q 010693 83 RIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLST--WPNNYGV-------WVDEFEDIGLVDCLDK-T-WP--M 149 (503)
Q Consensus 83 ~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~--~~~~~g~-------~~~~l~~~~~~~~~~~-~-~~--~ 149 (503)
|.++||+||||||+|+++|+.|++ +|++|+|+||.+... .+..+|. ....|+.+|+.+.+.. . +. .
T Consensus 1 ~~~~dviIvGgG~aGl~~A~~L~~-~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~ 79 (392)
T PRK09126 1 MMHSDIVVVGAGPAGLSFARSLAG-SGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRD 79 (392)
T ss_pred CCcccEEEECcCHHHHHHHHHHHh-CCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccce
Confidence 346999999999999999999999 999999999987532 1222221 2345778888544322 1 11 1
Q ss_pred eEEEecCCc-cccc------CCCccc-cCHHHHHHHHHHHHHh-CCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceE
Q 010693 150 TCVFINDHK-TKYL------DRPYGR-VSRNILKTKLLENCVS-NGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLI 219 (503)
Q Consensus 150 ~~~~~~~~~-~~~~------~~~~~~-v~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~v 219 (503)
..+...... .... ...+++ +.+..+.+.|.+.+.+ .|++++ +++|++++.+++.+.|.+++|++++||+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~v 159 (392)
T PRK09126 80 AKVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLL 159 (392)
T ss_pred EEEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEE
Confidence 122211110 0011 122344 6788899999888755 789999 99999999888888888888989999999
Q ss_pred EecCCCCcccccccCCCCC--ccceeEEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCCeE
Q 010693 220 VDASGFASSFVEYDKPRNH--GYQIAHGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNLV 297 (503)
Q Consensus 220 I~A~G~~s~vr~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~ 297 (503)
|+|||.+|.+|+..+.... .+.. ..+...+.... ....... .| ...+ .+++++|..++.+
T Consensus 160 I~AdG~~S~vr~~~g~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~-~~-----------~~~~----~~~~~~P~~~~~~ 221 (392)
T PRK09126 160 VAADSRFSATRRQLGIGADMHDFGR-TMLVCRMRHEL-PHHHTAW-EW-----------FGYG----QTLALLPLNGHLS 221 (392)
T ss_pred EEeCCCCchhhHhcCCCccccccCC-eEEEEEEeccC-CCCCEEE-EE-----------ecCC----CCeEEeECCCCCE
Confidence 9999999999986543221 1111 11111222111 1111111 11 1122 3578889887765
Q ss_pred EEecccccC----CCCCCHHHHHHHHHHHHhhcCCccceEeecceecccCCCCC--CCCCCCEEEeccCCCCcCCcccHH
Q 010693 298 FLEETSLVS----RPVLSYKEVKRRMAARLRHMGIRVKRVIEDEKCLIPMGGPL--PVIPQSVMAIGSTSGLVHPSTGYM 371 (503)
Q Consensus 298 ~v~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~p~~~~~--~~~~~~v~liGDAa~~~~P~~G~G 371 (503)
.+....... ....+.+++.+.+.+.+...-.... .......+|+.... +...+|++++|||||.++|++|||
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG 299 (392)
T PRK09126 222 SLVLTLPPDQIEALLALDPEAFAAEVTARFKGRLGAMR--LVSSRHAYPLVAVYAHRFVAKRFALIGDAAVGMHPVTAHG 299 (392)
T ss_pred EEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhccCeE--EcCCCcEeechHHHHHHHhhcceEEEehhhhcCCCcccch
Confidence 433221110 0123344555555554433211111 11112233432211 226799999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHhcCCC---CCCCchhhHHHHhh
Q 010693 372 VARTMALAPALADAIAECLGSTR---MIRGRPLHQKVWNG 408 (503)
Q Consensus 372 ~~~al~~a~~lA~~l~~~l~~~~---~~~~l~~y~~~~~~ 408 (503)
++.||+||..||++|...+..+. ..+.++.|++.++.
T Consensus 300 ~~~ai~da~~la~~L~~~~~~~~~~~~~~~l~~Y~~~r~~ 339 (392)
T PRK09126 300 FNLGLKGQDILARLILAAARRGQDIGAASLLERYERKHRL 339 (392)
T ss_pred hhhhHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence 99999999999999998875332 23468888877664
No 26
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.97 E-value=2.4e-28 Score=250.22 Aligned_cols=301 Identities=17% Similarity=0.187 Sum_probs=185.2
Q ss_pred cEEEECCCHHHHHHHHHHHccCC-CcEEEEcCCCCCCCC-----Ccccc---hhHhhhhcCchhhhhh-ccCceEEEecC
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHS-VKVCCVDPSPLSTWP-----NNYGV---WVDEFEDIGLVDCLDK-TWPMTCVFIND 156 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G-~~V~viE~~~~~~~~-----~~~g~---~~~~l~~~~~~~~~~~-~~~~~~~~~~~ 156 (503)
||+||||||+|+++|+.|++ +| ++|+|+||.+..... +..+. ....++.+|+.+.+.. ......+.+..
T Consensus 1 dv~IvGaG~aGl~~A~~L~~-~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~ 79 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSR-LGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSD 79 (382)
T ss_pred CEEEECccHHHHHHHHHHhc-CCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEc
Confidence 89999999999999999999 99 999999998654321 11122 2346788888554422 22221222211
Q ss_pred C---cccc-----cC-CCccc-cCHHHHHHHHHHHHHh-CCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCC
Q 010693 157 H---KTKY-----LD-RPYGR-VSRNILKTKLLENCVS-NGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASG 224 (503)
Q Consensus 157 ~---~~~~-----~~-~~~~~-v~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G 224 (503)
. .... .. ...++ ++|..+.+.|.+.+.+ .|++++ +++|++++.+++.+.|.+++|++++||+||+|||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG 159 (382)
T TIGR01984 80 QGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADG 159 (382)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecC
Confidence 1 0101 11 12234 8999999999999988 599999 9999999988888889998888999999999999
Q ss_pred CCcccccccCCCCCccce-eEEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCC-eEEEecc
Q 010693 225 FASSFVEYDKPRNHGYQI-AHGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSN-LVFLEET 302 (503)
Q Consensus 225 ~~s~vr~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~-~~~v~~~ 302 (503)
.+|.+++..+.......+ ...+...+.. ........+.. +..+ ++++++|..++ ...+...
T Consensus 160 ~~S~vr~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----------~~~~-----g~~~~~p~~~~~~~~~~~~ 222 (382)
T TIGR01984 160 ANSKVRELLSIPTEEHDYNQTALIANIRH-EQPHQGCAFER-----------FTPH-----GPLALLPLKDNYRSSLVWC 222 (382)
T ss_pred CChHHHHHcCCCCcccccCCEEEEEEEEe-cCCCCCEEEEe-----------eCCC-----CCeEECcCCCCCCEEEEEE
Confidence 999999865543222111 1122222221 11111111110 1112 24667888776 3322111
Q ss_pred ---cccC-CCCCCHHHHHHHHHHHHhhcCCccceEee-cceecccCCCCC--CCCCCCEEEeccCCCCcCCcccHHHHHH
Q 010693 303 ---SLVS-RPVLSYKEVKRRMAARLRHMGIRVKRVIE-DEKCLIPMGGPL--PVIPQSVMAIGSTSGLVHPSTGYMVART 375 (503)
Q Consensus 303 ---~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~i~~-~~~~~~p~~~~~--~~~~~~v~liGDAa~~~~P~~G~G~~~a 375 (503)
.... ....+.+++.+.+.+.+... ...+.. .....+|+.... ....+||+++|||||.++|++|||+++|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~a 299 (382)
T TIGR01984 223 LPSKQADTIANLPDAEFLAELQQAFGWR---LGKITQVGERKTYPLKLRIAETHVHPRVVLIGNAAQTLHPIAGQGFNLG 299 (382)
T ss_pred CCHHHHHHHHcCCHHHHHHHHHHHHhhh---ccCeEEcCCccEeecchhhhhheecCCEEEEeecccccCCccccchhhh
Confidence 0000 01234455555555544321 111111 112233333211 2256899999999999999999999999
Q ss_pred HHhHHHHHHHHHHHhcCCCCCCCchhhHHHHhh
Q 010693 376 MALAPALADAIAECLGSTRMIRGRPLHQKVWNG 408 (503)
Q Consensus 376 l~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~ 408 (503)
|+||..||++|............++.|++.++.
T Consensus 300 l~Da~~La~~L~~~~~~~~~~~~l~~Y~~~r~~ 332 (382)
T TIGR01984 300 LRDVETLAEVLIDARIDLGTYALLQEYLRRRQF 332 (382)
T ss_pred HHHHHHHHHHHHHhccCccCHHHHHHHHHHHHH
Confidence 999999999998775222223467778776553
No 27
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.97 E-value=2.8e-28 Score=251.52 Aligned_cols=303 Identities=17% Similarity=0.225 Sum_probs=188.1
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCC-CCCC--C---CCcccc---hhHhhhhcCchhhhhh----ccCce
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPS-PLST--W---PNNYGV---WVDEFEDIGLVDCLDK----TWPMT 150 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~-~~~~--~---~~~~g~---~~~~l~~~~~~~~~~~----~~~~~ 150 (503)
..+||+||||||+|+++|+.|++ .|++|+|+|+. +... . .+..+. ....|+++|+.+.+.. .+...
T Consensus 3 ~~~dV~IvGaG~~Gl~~A~~L~~-~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~ 81 (405)
T PRK08850 3 QSVDVAIIGGGMVGLALAAALKE-SDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAM 81 (405)
T ss_pred CcCCEEEECccHHHHHHHHHHHh-CCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEE
Confidence 46899999999999999999999 99999999986 3211 1 122222 2346788898554432 12222
Q ss_pred EEEecCC-ccc-----cc-CCCccc-cCHHHHHHHHHHHHHh-CCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEE
Q 010693 151 CVFINDH-KTK-----YL-DRPYGR-VSRNILKTKLLENCVS-NGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIV 220 (503)
Q Consensus 151 ~~~~~~~-~~~-----~~-~~~~~~-v~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI 220 (503)
.+.-.+. ... .. ...+++ +.+..+.+.|.+.+.+ .|++++ +++|++++.+++.+.|.+.+|++++||+||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvI 161 (405)
T PRK08850 82 EVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVV 161 (405)
T ss_pred EEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEE
Confidence 2221111 000 11 123454 7788899999998877 579999 999999998888889999999999999999
Q ss_pred ecCCCCcccccccCCCCCccce-eEEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCC-eE-
Q 010693 221 DASGFASSFVEYDKPRNHGYQI-AHGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSN-LV- 297 (503)
Q Consensus 221 ~A~G~~s~vr~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~-~~- 297 (503)
+|||.+|.+|+..+.......+ ...+...+... ...+....+ .|.++| .+.++|..++ ..
T Consensus 162 gADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~-----------~~~~~g-----~~~~lp~~~~~~~~ 224 (405)
T PRK08850 162 GADGANSWLRRQMDIPLTHWDYGHSALVANVRTV-DPHNSVARQ-----------IFTPQG-----PLAFLPMSEPNMSS 224 (405)
T ss_pred EeCCCCChhHHHcCCCeeEEeeccEEEEEEEEcc-CCCCCEEEE-----------EEcCCC-----ceEEEECCCCCeEE
Confidence 9999999999976554332211 12333333221 111111111 122233 3566787753 32
Q ss_pred --EEecccccCC-CCCCHHHHHHHHHHHHhhcCCccceEeecceecccCCCCC--CCCCCCEEEeccCCCCcCCcccHHH
Q 010693 298 --FLEETSLVSR-PVLSYKEVKRRMAARLRHMGIRVKRVIEDEKCLIPMGGPL--PVIPQSVMAIGSTSGLVHPSTGYMV 372 (503)
Q Consensus 298 --~v~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~p~~~~~--~~~~~~v~liGDAa~~~~P~~G~G~ 372 (503)
|......... ...+.+++.+.+.+.+... .....+ ......+|+.... ....+||+++|||||.++|..|||+
T Consensus 225 ~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~-~~~~~~~pl~~~~~~~~~~~rv~LiGDAAH~~~P~~GQG~ 302 (405)
T PRK08850 225 IVWSTEPLRAEALLAMSDEQFNKALTAEFDNR-LGLCEV-VGERQAFPLKMRYARDFVRERVALVGDAAHTIHPLAGQGV 302 (405)
T ss_pred EEEECCHHHHHHHHcCCHHHHHHHHHHHHhhh-hCcEEE-cccccEEecceeeccccccCcEEEEEhhhhcCCccccccH
Confidence 2221111110 2234455655555554321 111111 1122345543322 2367999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHhcCCCC---CCCchhhHHHH
Q 010693 373 ARTMALAPALADAIAECLGSTRM---IRGRPLHQKVW 406 (503)
Q Consensus 373 ~~al~~a~~lA~~l~~~l~~~~~---~~~l~~y~~~~ 406 (503)
|+||+||..||+.|......+.+ ...|+.|++..
T Consensus 303 n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R 339 (405)
T PRK08850 303 NLGLLDAASLAQEILALWQQGRDIGLKRNLRGYERWR 339 (405)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 99999999999999987744332 24577787543
No 28
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.97 E-value=8.5e-28 Score=248.73 Aligned_cols=346 Identities=15% Similarity=0.114 Sum_probs=206.4
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccc--hhHhhhhc--------CchhhhhhccCceEEE
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGV--WVDEFEDI--------GLVDCLDKTWPMTCVF 153 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~--~~~~l~~~--------~~~~~~~~~~~~~~~~ 153 (503)
.+|||+||||||||+++|+.|++ +|++|+||||.+.++....+|. +...++.+ .++..+. +....+.
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~-~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~--~~~~~~~ 80 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAR-EGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLIT--HEKLAFM 80 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHh-CCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceee--eeeEEEE
Confidence 46999999999999999999999 9999999999876655444442 11222221 1111110 0111111
Q ss_pred ecCCc-------cc-ccCCCccc-cCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecC
Q 010693 154 INDHK-------TK-YLDRPYGR-VSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDAS 223 (503)
Q Consensus 154 ~~~~~-------~~-~~~~~~~~-v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~ 223 (503)
..+.. .. ......++ +.|..|++.|.+.+++.|++++ +++|+++..+++.+.+...+|.+++|++||+|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~ 160 (428)
T PRK10157 81 TEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILAD 160 (428)
T ss_pred cCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEe
Confidence 11110 00 01112223 8899999999999999999999 899999988777765555667789999999999
Q ss_pred CCCcccccccCCCC--CccceeEEEEEEecCCC------C---CCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeec
Q 010693 224 GFASSFVEYDKPRN--HGYQIAHGILAEVESHP------F---DLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPF 292 (503)
Q Consensus 224 G~~s~vr~~~~~~~--~~~~~~~g~~~~~~~~~------~---~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~ 292 (503)
|.+|.+++..+... ...+...++...+..+. + +...........+ ..| ..++.|+++.
T Consensus 161 G~~s~l~~~lgl~~~~~~~~~av~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~---------~~g--~~ggG~~~~~ 229 (428)
T PRK10157 161 GVNSILAEKLGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSP---------TDG--LMGGGFLYTN 229 (428)
T ss_pred CCCHHHHHHcCCCCCCCCcEEEEEEEEEEEcCHHHHHHhhccCCCCCeEEEEEECC---------CCC--CcCceeEEEc
Confidence 99999887654432 23333444433322111 0 0111111000000 011 1122344454
Q ss_pred CCCeEEEeccc---ccCCCCCCHHHHHHHHHHHHhhcC--CccceEeecceecccCCCCC--C-CCCCCEEEeccCCCCc
Q 010693 293 DSNLVFLEETS---LVSRPVLSYKEVKRRMAARLRHMG--IRVKRVIEDEKCLIPMGGPL--P-VIPQSVMAIGSTSGLV 364 (503)
Q Consensus 293 ~~~~~~v~~~~---~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~i~~~~~~~~p~~~~~--~-~~~~~v~liGDAa~~~ 364 (503)
.+ .+.++... ..........++.+.+.. .+... +.-....+.....+|..+.. + ...++++++||||+++
T Consensus 230 ~~-~~svG~~~~~~~~~~~~~~~~~~l~~~~~-~p~v~~~~~~~~~~~~~~~~ip~~g~~~~~~~~~~g~llvGDAAg~v 307 (428)
T PRK10157 230 EN-TLSLGLVCGLHHLHDAKKSVPQMLEDFKQ-HPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMC 307 (428)
T ss_pred CC-eEEEEEEEehHHhcccCCCHHHHHHHHHh-CchHHHHhCCCeEHHHHhhHhhcCCcccCCceecCCeEEEecccccc
Confidence 43 33333211 111123345555554432 12111 11122333444567765533 2 3679999999999999
Q ss_pred CC--cccHHHHHHHHhHHHHHHHHHHHhcCCC-CCCCchhhHHHHhhcCcHHHHHHHHHHHHhH-HHHhCCChhhHHHHH
Q 010693 365 HP--STGYMVARTMALAPALADAIAECLGSTR-MIRGRPLHQKVWNGLWPIDRRCNREFYSFGM-ETLLKLDLKGTRRFF 440 (503)
Q Consensus 365 ~P--~~G~G~~~al~~a~~lA~~l~~~l~~~~-~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~f 440 (503)
+| ++|+|++.||.+|..+|+++.++++.++ +...|..|++.|++.+..+.+..+.+..|.. ..+++.-|+...+.+
T Consensus 308 ~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~~~s~~~l~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (428)
T PRK10157 308 MNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESGPLRDMRMYQKLPAFLDNPRMFSGYPELAVGVA 387 (428)
T ss_pred cccCceeeeHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHhHHHHHHHHhccHHHhcCccHHHHHHHHHHHHH
Confidence 98 5999999999999999999999998765 4567999999999876666665554444321 112233355566666
Q ss_pred HHHcc
Q 010693 441 DAFFD 445 (503)
Q Consensus 441 ~~~~~ 445 (503)
..+|.
T Consensus 388 ~~~~~ 392 (428)
T PRK10157 388 RDLFT 392 (428)
T ss_pred HHhee
Confidence 67775
No 29
>PRK06834 hypothetical protein; Provisional
Probab=99.97 E-value=2.3e-27 Score=248.77 Aligned_cols=300 Identities=16% Similarity=0.118 Sum_probs=193.9
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCC--CCCcccch---hHhhhhcCchhhhhh-c--cCceE---E
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLST--WPNNYGVW---VDEFEDIGLVDCLDK-T--WPMTC---V 152 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~--~~~~~g~~---~~~l~~~~~~~~~~~-~--~~~~~---~ 152 (503)
..+||+||||||+|+++|+.|++ +|++|+|||+.+... .++..+.+ .+.++.+|+.+.+.. . +.... .
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~-~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 80 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELAL-AGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAAT 80 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeE
Confidence 46999999999999999999999 999999999987533 23333443 345777888443322 1 11111 1
Q ss_pred EecCCcccccCCCccc-cCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCcccc
Q 010693 153 FINDHKTKYLDRPYGR-VSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSFV 230 (503)
Q Consensus 153 ~~~~~~~~~~~~~~~~-v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~vr 230 (503)
.++.. ......+++. +.+..+++.|.+.+.+.|++++ +++|++++.+++++.+++.+|++++||+||+|||.+|.+|
T Consensus 81 ~~~~~-~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~vR 159 (488)
T PRK06834 81 RLDIS-DFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLVR 159 (488)
T ss_pred ecccc-cCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCcH
Confidence 11111 0011124444 7788999999999988999999 9999999999888989888888999999999999999999
Q ss_pred cccCCCCCcccee-EEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecC-CCeEEE--ecccccC
Q 010693 231 EYDKPRNHGYQIA-HGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFD-SNLVFL--EETSLVS 306 (503)
Q Consensus 231 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~-~~~~~v--~~~~~~~ 306 (503)
+..+....+..+. ..+...+..... +. ... + + .. .+++.+.|.. ++...+ .......
T Consensus 160 ~~lgi~~~g~~~~~~~~~~dv~~~~~-~~-~~~--~----------~--~~---~g~~~~~~~~~~~~~~~~~~~~~~~~ 220 (488)
T PRK06834 160 KAAGIDFPGWDPTTSYLIAEVEMTEE-PE-WGV--H----------R--DA---LGIHAFGRLEDEGPVRVMVTEKQVGA 220 (488)
T ss_pred hhcCCCCCCCCcceEEEEEEEEecCC-CC-cce--e----------e--CC---CceEEEeccCCCCeEEEEEecCCCCC
Confidence 8776544433322 222223221100 00 000 0 0 11 1345555554 343221 1111111
Q ss_pred CCCCCHHHHHHHHHHHHhh-cCCccceEeecceecccCCCCC--CCCCCCEEEeccCCCCcCCcccHHHHHHHHhHHHHH
Q 010693 307 RPVLSYKEVKRRMAARLRH-MGIRVKRVIEDEKCLIPMGGPL--PVIPQSVMAIGSTSGLVHPSTGYMVARTMALAPALA 383 (503)
Q Consensus 307 ~~~~~~~~~~~~l~~~l~~-~~~~~~~i~~~~~~~~p~~~~~--~~~~~~v~liGDAa~~~~P~~G~G~~~al~~a~~lA 383 (503)
....+.+++.+.+.+.+.. ++.. ... ....++..... ....+||+++|||||.++|+.|||+|++|+||..||
T Consensus 221 ~~~~~~~~~~~~l~~~~g~~~~~~--~~~--~~~~~~~~~r~a~~~~~gRV~LaGDAAH~~~P~gGQG~N~gi~DA~nLa 296 (488)
T PRK06834 221 TGEPTLDDLREALIAVYGTDYGIH--SPT--WISRFTDMARQAASYRDGRVLLAGDAAHVHSPVGGQGLNTGVQDAVNLG 296 (488)
T ss_pred CCCCCHHHHHHHHHHhhCCCCccc--cce--eEEeccccceecccccCCcEEEEeeccccCCccccccccccHHHHHHHH
Confidence 1245667777777766642 2211 111 11223322221 236799999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCchhhHHHHhh
Q 010693 384 DAIAECLGSTRMIRGRPLHQKVWNG 408 (503)
Q Consensus 384 ~~l~~~l~~~~~~~~l~~y~~~~~~ 408 (503)
+.|+..+.+......|+.|+...+.
T Consensus 297 wkLa~vl~g~~~~~lLd~Ye~eRrp 321 (488)
T PRK06834 297 WKLAQVVKGTSPESLLDTYHAERHP 321 (488)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 9999998765556789999887653
No 30
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.97 E-value=4e-28 Score=248.59 Aligned_cols=301 Identities=14% Similarity=0.196 Sum_probs=185.0
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCC-------Ccccc---hhHhhhhcCchhhhhh--ccC--c
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWP-------NNYGV---WVDEFEDIGLVDCLDK--TWP--M 149 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~-------~~~g~---~~~~l~~~~~~~~~~~--~~~--~ 149 (503)
..+||+||||||+|+++|+.|++ .|++|+|||+.+..... +..+. ....|+.+|+.+.+.. ..+ .
T Consensus 2 ~~~dv~IvGgG~aGl~~A~~L~~-~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~ 80 (384)
T PRK08849 2 NKYDIAVVGGGMVGAATALGFAK-QGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKR 80 (384)
T ss_pred CcccEEEECcCHHHHHHHHHHHh-CCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccce
Confidence 35899999999999999999999 99999999987532111 11122 3356788898554422 111 1
Q ss_pred eEEEecCCccc-----cc-CCCccc-cCHHHHHHHHHHHHHh-CCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEE
Q 010693 150 TCVFINDHKTK-----YL-DRPYGR-VSRNILKTKLLENCVS-NGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIV 220 (503)
Q Consensus 150 ~~~~~~~~~~~-----~~-~~~~~~-v~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI 220 (503)
..+........ .+ ...+++ +.+..+...|.+.+.+ .|++++ +++|++++.+++++.|++.+|.+++||+||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvI 160 (384)
T PRK08849 81 LETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVI 160 (384)
T ss_pred EEEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEE
Confidence 11111111100 11 123344 6667788888888766 579999 999999999888899999999999999999
Q ss_pred ecCCCCcccccccCCCCCccce-eEEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCC---e
Q 010693 221 DASGFASSFVEYDKPRNHGYQI-AHGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSN---L 296 (503)
Q Consensus 221 ~A~G~~s~vr~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~---~ 296 (503)
+|||.+|.+|+..+.....+.+ ...+...+.......+ ..+ ..+.+.| + ...+|..++ .
T Consensus 161 gADG~~S~vR~~~gi~~~~~~~~~~~~v~~~~~~~~~~~-~~~-----------~~~~~~g---~--~~~~pl~~~~~~~ 223 (384)
T PRK08849 161 GADGANSQVRQLAGIGITAWDYRQHCMLINVETEQPQQD-ITW-----------QQFTPSG---P--RSFLPLCGNQGSL 223 (384)
T ss_pred EecCCCchhHHhcCCCceeccCCCeEEEEEEEcCCCCCC-EEE-----------EEeCCCC---C--EEEeEcCCCceEE
Confidence 9999999999976543322221 1122222221111111 111 1122234 3 223566543 2
Q ss_pred EEEeccccc-CCCCCCHHHHHHHHHHHHhhcCCccceEeecceecccCCCCC--CCCCCCEEEeccCCCCcCCcccHHHH
Q 010693 297 VFLEETSLV-SRPVLSYKEVKRRMAARLRHMGIRVKRVIEDEKCLIPMGGPL--PVIPQSVMAIGSTSGLVHPSTGYMVA 373 (503)
Q Consensus 297 ~~v~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~p~~~~~--~~~~~~v~liGDAa~~~~P~~G~G~~ 373 (503)
+|....... .....+.+.+.+.+.+.++.. ...+.......+|+.... ....+|++++|||||.++|..|||+|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~grv~LlGDAAH~~~P~~GQG~n 300 (384)
T PRK08849 224 VWYDSPKRIKQLSAMNPEQLRSEILRHFPAE---LGEIKVLQHGSFPLTRRHAQQYVKNNCVLLGDAAHTINPLAGQGVN 300 (384)
T ss_pred EEECCHHHHHHHHcCCHHHHHHHHHHHhhhh---hCcEEeccceEeeccccccchhccCCEEEEEcccccCCCCccchHh
Confidence 332211100 012245666677676666542 112222233455654322 23679999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHhcCCCCCCCchhhHHHHh
Q 010693 374 RTMALAPALADAIAECLGSTRMIRGRPLHQKVWN 407 (503)
Q Consensus 374 ~al~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~ 407 (503)
+|++||..|++.|... .......++.|++..+
T Consensus 301 ~al~Da~~L~~~l~~~--~~~~~~~L~~Ye~~R~ 332 (384)
T PRK08849 301 LGFKDVDVLLAETEKQ--GVLNDASFARYERRRR 332 (384)
T ss_pred HHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHh
Confidence 9999999999988642 1122356778876544
No 31
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.97 E-value=4.8e-28 Score=248.25 Aligned_cols=302 Identities=18% Similarity=0.195 Sum_probs=192.9
Q ss_pred cEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCC------Ccccc---hhHhhhhcCchhhhhh--c--cCceEEE
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWP------NNYGV---WVDEFEDIGLVDCLDK--T--WPMTCVF 153 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~------~~~g~---~~~~l~~~~~~~~~~~--~--~~~~~~~ 153 (503)
||+||||||||+++|+.|++ +|++|+||||.+..... +..+. ....++.+|+.+.+.. . +....++
T Consensus 1 dViIvGaG~aGl~~A~~L~~-~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~ 79 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALAR-SGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVS 79 (385)
T ss_pred CEEEECCCHHHHHHHHHHhc-CCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEE
Confidence 79999999999999999999 99999999999764321 22222 2345778888544332 2 2222222
Q ss_pred ecCCcc-ccc------CCCccc-cCHHHHHHHHHHHHHhCC-cEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecC
Q 010693 154 INDHKT-KYL------DRPYGR-VSRNILKTKLLENCVSNG-VKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDAS 223 (503)
Q Consensus 154 ~~~~~~-~~~------~~~~~~-v~r~~l~~~L~~~~~~~g-v~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~ 223 (503)
...... ... ...+++ ++|..+.+.|.+.+.+.| ++++ +++|++++.+++++.+.+.+|+++++|+||+||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~ad 159 (385)
T TIGR01988 80 DGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGAD 159 (385)
T ss_pred eCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeC
Confidence 222110 011 112333 889999999999998877 9999 999999998888888999999899999999999
Q ss_pred CCCcccccccCCCCCccce-eEEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCCeEEEecc
Q 010693 224 GFASSFVEYDKPRNHGYQI-AHGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNLVFLEET 302 (503)
Q Consensus 224 G~~s~vr~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~~v~~~ 302 (503)
|.+|.+|+..+.......+ ..++...+........ .... .+.++ ++++++|.+++...+...
T Consensus 160 G~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----------~~~~~-----g~~~~~p~~~~~~~~~~~ 222 (385)
T TIGR01988 160 GANSKVRQLAGIPTTGWDYGQSAVVANVKHERPHQG-TAWE-----------RFTPT-----GPLALLPLPDNRSSLVWT 222 (385)
T ss_pred CCCCHHHHHcCCCccccccCCeEEEEEEEecCCCCC-EEEE-----------EecCC-----CCEEEeECCCCCeEEEEE
Confidence 9999999865533221111 1222222221111111 1110 01122 357788998876543322
Q ss_pred cccC----CCCCCHHHHHHHHHHHHhhcCCccceEeecceecccCCCCC--CCCCCCEEEeccCCCCcCCcccHHHHHHH
Q 010693 303 SLVS----RPVLSYKEVKRRMAARLRHMGIRVKRVIEDEKCLIPMGGPL--PVIPQSVMAIGSTSGLVHPSTGYMVARTM 376 (503)
Q Consensus 303 ~~~~----~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~p~~~~~--~~~~~~v~liGDAa~~~~P~~G~G~~~al 376 (503)
.... ....+.+++.+.+.+.+....... ........+|+.... +...++|+++|||||.++|++|||+++|+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAah~~~P~~G~G~~~Ai 300 (385)
T TIGR01988 223 LPPEEAERLLALSDEEFLAELQRAFGSRLGAI--TLVGERHAFPLSLTHAKRYVAPRLALIGDAAHTIHPLAGQGLNLGL 300 (385)
T ss_pred CCHHHHHHHHcCCHHHHHHHHHHHHhhhcCce--EeccCcceeechhhhhhheecCceEEEecccccCCccccchhhhhH
Confidence 1110 112345566666665554321111 112233455554322 23678999999999999999999999999
Q ss_pred HhHHHHHHHHHHHhcCCC---CCCCchhhHHHHhh
Q 010693 377 ALAPALADAIAECLGSTR---MIRGRPLHQKVWNG 408 (503)
Q Consensus 377 ~~a~~lA~~l~~~l~~~~---~~~~l~~y~~~~~~ 408 (503)
+||..||+.|...+..+. ....++.|++.++.
T Consensus 301 ~da~~La~~L~~~~~~~~~~~~~~~l~~y~~~r~~ 335 (385)
T TIGR01988 301 RDVAALAEVLEDARRRGEDIGSPRVLQRYERRRRF 335 (385)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 999999999998875332 23567778776553
No 32
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.96 E-value=8.1e-28 Score=250.13 Aligned_cols=305 Identities=18% Similarity=0.258 Sum_probs=189.0
Q ss_pred CcEEEECCCHHHHHHHHHHHcc---CCCcEEEEcCCCCCCC-------------CCcccc---hhHhhhhcCchhhhhh-
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSR---HSVKVCCVDPSPLSTW-------------PNNYGV---WVDEFEDIGLVDCLDK- 145 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~---~G~~V~viE~~~~~~~-------------~~~~g~---~~~~l~~~~~~~~~~~- 145 (503)
|||+||||||+|+++|+.|++. +|++|+|||+.+.... .+..+. ....|+.+|+.+.+..
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 7999999999999999999972 4999999999542221 122222 3345778888554432
Q ss_pred cc-CceEEEe-cCCcc--ccc-----CCCccc-cCHHHHHHHHHHHHHhCC---cEEE-EeEEEEEEEe-------CCEE
Q 010693 146 TW-PMTCVFI-NDHKT--KYL-----DRPYGR-VSRNILKTKLLENCVSNG---VKFH-KAKVWHVNHQ-------EFES 204 (503)
Q Consensus 146 ~~-~~~~~~~-~~~~~--~~~-----~~~~~~-v~r~~l~~~L~~~~~~~g---v~~~-~~~v~~i~~~-------~~~~ 204 (503)
.+ ....+.+ +.... ..+ ..++++ +++..+.+.|.+.+.+.+ ++++ +++|++++.+ ++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v 160 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWV 160 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCce
Confidence 22 1112222 11111 111 123344 789999999999988754 8999 9999999752 4578
Q ss_pred EEEeCCCcEEEeceEEecCCCCcccccccCCCCCcccee-EEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCC
Q 010693 205 SIVCDDGNEIKASLIVDASGFASSFVEYDKPRNHGYQIA-HGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKL 283 (503)
Q Consensus 205 ~v~~~~g~~i~a~~vI~A~G~~s~vr~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~ 283 (503)
.|++.+|++++||+||+|||.+|.+|+..+....+..+. .++...+...........+ ..|.++|
T Consensus 161 ~v~~~~g~~i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~~v~~~~~~~~~~~~-----------~~f~~~g--- 226 (437)
T TIGR01989 161 HITLSDGQVLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVATLKLEEATENDVAW-----------QRFLPTG--- 226 (437)
T ss_pred EEEEcCCCEEEeeEEEEecCCCChhHHHcCCCccceeeccEEEEEEEEcccCCCCCeEE-----------EEECCCC---
Confidence 889999999999999999999999999776654443332 2333333221111111111 1133344
Q ss_pred CeEEEEeecCCCeEEEecc---cccC-CCCCCHHHHHHHHHHHHh-------h--------------cCCc---------
Q 010693 284 PTFLYAMPFDSNLVFLEET---SLVS-RPVLSYKEVKRRMAARLR-------H--------------MGIR--------- 329 (503)
Q Consensus 284 ~~~~~~~P~~~~~~~v~~~---~~~~-~~~~~~~~~~~~l~~~l~-------~--------------~~~~--------- 329 (503)
.+.++|..++...+..+ .... ....+.+++.+.+.+.+. . .+..
T Consensus 227 --~~~~lPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 304 (437)
T TIGR01989 227 --PIALLPLPDNNSTLVWSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDHPYSYLLDYAMEKLNEDIGFRTEGSKSCFQ 304 (437)
T ss_pred --CEEEeECCCCCEEEEEeCCHHHHHHHHcCCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccc
Confidence 36677888764422111 1100 123455666666544440 0 0000
Q ss_pred ----cceEeecceecccCCCCCC--CCCCCEEEeccCCCCcCCcccHHHHHHHHhHHHHHHHHHHHhcCCCC---CCCch
Q 010693 330 ----VKRVIEDEKCLIPMGGPLP--VIPQSVMAIGSTSGLVHPSTGYMVARTMALAPALADAIAECLGSTRM---IRGRP 400 (503)
Q Consensus 330 ----~~~i~~~~~~~~p~~~~~~--~~~~~v~liGDAa~~~~P~~G~G~~~al~~a~~lA~~l~~~l~~~~~---~~~l~ 400 (503)
...+.......+|+..... ...+||+++|||||.++|..|||+|.|++||..||+.|.+....+.+ ...|+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~~~~L~ 384 (437)
T TIGR01989 305 VPPRVIGVVDKSRAAFPLGLGHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVGADIGSISSLK 384 (437)
T ss_pred cCchhheeecccceeEEecccchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHH
Confidence 0111111224455543322 26799999999999999999999999999999999999988765432 23566
Q ss_pred hhHHHH
Q 010693 401 LHQKVW 406 (503)
Q Consensus 401 ~y~~~~ 406 (503)
.|++.+
T Consensus 385 ~Y~~~R 390 (437)
T TIGR01989 385 PYERER 390 (437)
T ss_pred HHHHHH
Confidence 776543
No 33
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.96 E-value=1.4e-27 Score=245.19 Aligned_cols=305 Identities=15% Similarity=0.121 Sum_probs=181.5
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCC---CCcc---cchhHhhhhcCchhhhhh-c--cCceEEEec
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTW---PNNY---GVWVDEFEDIGLVDCLDK-T--WPMTCVFIN 155 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~---~~~~---g~~~~~l~~~~~~~~~~~-~--~~~~~~~~~ 155 (503)
.+||+||||||+|+++|+.|++ .|++|+|+|+.+.... .+.. ......++++|+.+.+.. . +....++.+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~-~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~ 80 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHL-AGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFD 80 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHh-cCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEEC
Confidence 5899999999999999999999 9999999999875321 1111 123346788898544432 2 223333332
Q ss_pred CCcc-cccC----CC-ccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEE-eCCEEEEEe-CCCc--EEEeceEEecCC
Q 010693 156 DHKT-KYLD----RP-YGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNH-QEFESSIVC-DDGN--EIKASLIVDASG 224 (503)
Q Consensus 156 ~~~~-~~~~----~~-~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~-~~~~~~v~~-~~g~--~i~a~~vI~A~G 224 (503)
+... ..+. .. ...+.+..+.+.|.+.+.+.|++++ ++++++++. +++.+.|++ .+|+ +++||+||+|||
T Consensus 81 g~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG 160 (392)
T PRK08243 81 GRRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDG 160 (392)
T ss_pred CEEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCC
Confidence 2110 0111 11 1125678888889888888899999 999999987 556666776 4664 699999999999
Q ss_pred CCcccccccCCCCC-cccee--EEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCC--eEEE
Q 010693 225 FASSFVEYDKPRNH-GYQIA--HGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSN--LVFL 299 (503)
Q Consensus 225 ~~s~vr~~~~~~~~-~~~~~--~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~--~~~v 299 (503)
.+|.+|+....... .+... .++...+...+...+...+. ..+ .+|.++.|.+.+ .+++
T Consensus 161 ~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~---~~~~~~~~~~~~~~~~~~ 223 (392)
T PRK08243 161 FHGVSRASIPAGALRTFERVYPFGWLGILAEAPPVSDELIYA--------------NHE---RGFALCSMRSPTRSRYYL 223 (392)
T ss_pred CCCchhhhcCcchhhceecccCceEEEEeCCCCCCCCceEEe--------------eCC---CceEEEecCCCCcEEEEE
Confidence 99999997644221 11111 12111111101011111110 011 235555555443 2222
Q ss_pred ecccccCCCCCCHHHHHHHHHHHHhhc-CCccceEeecceecccCCCCC--CCCCCCEEEeccCCCCcCCcccHHHHHHH
Q 010693 300 EETSLVSRPVLSYKEVKRRMAARLRHM-GIRVKRVIEDEKCLIPMGGPL--PVIPQSVMAIGSTSGLVHPSTGYMVARTM 376 (503)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~i~~~~~~~~p~~~~~--~~~~~~v~liGDAa~~~~P~~G~G~~~al 376 (503)
...........+.+...+.+.+.+... +.............+|+.... +...+||+++|||||.++|++|||+|+||
T Consensus 224 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~ai 303 (392)
T PRK08243 224 QCPLDDKVEDWSDERFWDELRRRLPPEDAERLVTGPSIEKSIAPLRSFVAEPMQYGRLFLAGDAAHIVPPTGAKGLNLAA 303 (392)
T ss_pred EecCCCCcccCChhHHHHHHHHhcCcccccccccCccccccceeeeeceeccceeCCEEEEecccccCCCCcCcchhHHH
Confidence 211111112234555566666655431 111100000011223332221 23568999999999999999999999999
Q ss_pred HhHHHHHHHHHHHhcCCCCCCCchhhHHHHhh
Q 010693 377 ALAPALADAIAECLGSTRMIRGRPLHQKVWNG 408 (503)
Q Consensus 377 ~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~ 408 (503)
+||..||+.|...++++ ....|+.|++.++.
T Consensus 304 ~Da~~La~~L~~~~~~~-~~~~L~~Ye~~r~~ 334 (392)
T PRK08243 304 SDVRYLARALVEFYREG-DTALLDAYSATALR 334 (392)
T ss_pred HHHHHHHHHHHHHhccC-CHHHHHHHHHHHHH
Confidence 99999999999887543 34678889887664
No 34
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.96 E-value=8.9e-28 Score=246.59 Aligned_cols=304 Identities=17% Similarity=0.211 Sum_probs=189.1
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCC------Cccc---chhHhhhhcCchhhhh-hcc---Cce
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWP------NNYG---VWVDEFEDIGLVDCLD-KTW---PMT 150 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~------~~~g---~~~~~l~~~~~~~~~~-~~~---~~~ 150 (503)
..+||+||||||||+++|+.|++ .|++|+|+|+++..... +..+ .....++.+|+.+.+. ..+ ...
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~-~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 82 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQ-SGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDM 82 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHh-CCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEE
Confidence 35899999999999999999999 99999999998764321 1111 1334577778744332 222 112
Q ss_pred EEEecCCcccc-----cCCC--ccccCHHHHHHHHHHHHHhCC-cEEEEeEEEEEEEeCCEEEEEeCCCcEEEeceEEec
Q 010693 151 CVFINDHKTKY-----LDRP--YGRVSRNILKTKLLENCVSNG-VKFHKAKVWHVNHQEFESSIVCDDGNEIKASLIVDA 222 (503)
Q Consensus 151 ~~~~~~~~~~~-----~~~~--~~~v~r~~l~~~L~~~~~~~g-v~~~~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A 222 (503)
.++........ ...+ ...+++..+.+.|.+.+.+.| +++++++|++++.+++.+.|++.+|.+++||+||+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~a 162 (388)
T PRK07608 83 RVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWFPARAQGLEVDPDAATLTLADGQVLRADLVVGA 162 (388)
T ss_pred EEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEEcceeEEEEecCCeEEEEECCCCEEEeeEEEEe
Confidence 22211111111 0111 123789999999999998877 888888899998888888899988888999999999
Q ss_pred CCCCcccccccCCCCCccce-eEEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCCeEEEec
Q 010693 223 SGFASSFVEYDKPRNHGYQI-AHGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNLVFLEE 301 (503)
Q Consensus 223 ~G~~s~vr~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~~v~~ 301 (503)
||.+|.+++..+.......+ ..++...++......+ ..+. | +. . .++++++|.+++.+.+..
T Consensus 163 dG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~----------~~-~----~~~~~~~p~~~~~~~~~~ 225 (388)
T PRK07608 163 DGAHSWVRSQAGIKAERRPYRQTGVVANFKAERPHRG-TAYQ-W----------FR-D----DGILALLPLPDGHVSMVW 225 (388)
T ss_pred CCCCchHHHhcCCCccccccCCEEEEEEEEecCCCCC-EEEE-E----------ec-C----CCCEEEeECCCCCeEEEE
Confidence 99999998865543222111 1333333332111111 1110 1 11 2 246788999988655432
Q ss_pred cc---ccCC-CCCCHHHHHHHHHHHHhhcCCccceEeecceecccCCCCC-C-CCCCCEEEeccCCCCcCCcccHHHHHH
Q 010693 302 TS---LVSR-PVLSYKEVKRRMAARLRHMGIRVKRVIEDEKCLIPMGGPL-P-VIPQSVMAIGSTSGLVHPSTGYMVART 375 (503)
Q Consensus 302 ~~---~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~p~~~~~-~-~~~~~v~liGDAa~~~~P~~G~G~~~a 375 (503)
.. .... ...+.+++.+.+...+...-... .... ....+|+.... + ...+||+++|||||.++|++|||++.|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~rv~liGDAAh~~~P~~GqG~n~a 303 (388)
T PRK07608 226 SARTAHADELLALSPEALAARVERASGGRLGRL-ECVT-PAAGFPLRLQRVDRLVAPRVALVGDAAHLIHPLAGQGMNLG 303 (388)
T ss_pred ECCHHHHHHHHCCCHHHHHHHHHHHHHHhcCCc-eecC-CcceeecchhhhhhhhcCceEEEeccccccCCccccccchh
Confidence 11 0000 12345566666665554311111 1111 11234543221 2 267899999999999999999999999
Q ss_pred HHhHHHHHHHHHHHhcCCC--CCCCchhhHHHHh
Q 010693 376 MALAPALADAIAECLGSTR--MIRGRPLHQKVWN 407 (503)
Q Consensus 376 l~~a~~lA~~l~~~l~~~~--~~~~l~~y~~~~~ 407 (503)
|+||..||+.|......++ ..+.++.|+..++
T Consensus 304 i~da~~La~~L~~~~~~~~~~~~~~l~~Ye~~R~ 337 (388)
T PRK07608 304 LRDVAALADVLAGREPFRDLGDLRLLRRYERARR 337 (388)
T ss_pred HHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHH
Confidence 9999999999987642211 1245777877655
No 35
>PRK07190 hypothetical protein; Provisional
Probab=99.96 E-value=2.6e-27 Score=248.15 Aligned_cols=300 Identities=12% Similarity=0.100 Sum_probs=193.4
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCC-CCcccc---hhHhhhhcCchh-hhhhc--------cCce
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTW-PNNYGV---WVDEFEDIGLVD-CLDKT--------WPMT 150 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~-~~~~g~---~~~~l~~~~~~~-~~~~~--------~~~~ 150 (503)
..+||+||||||+||++|+.|++ +|++|+|||+.+.... .+..+. ..+.++.+|+.+ +.... |...
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar-~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g 82 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQL-CGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANG 82 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHH-cCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCC
Confidence 35899999999999999999999 9999999999875422 222222 233466777733 22221 1111
Q ss_pred E-EEecCCc---ccccCCCc-cccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCC
Q 010693 151 C-VFINDHK---TKYLDRPY-GRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASG 224 (503)
Q Consensus 151 ~-~~~~~~~---~~~~~~~~-~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G 224 (503)
. +...... ......++ ..+.+..+++.|.+.+.+.|++++ +++|++++.+++++.+.+.+|++++|++||+|||
T Consensus 83 ~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG 162 (487)
T PRK07190 83 KFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADG 162 (487)
T ss_pred ceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCC
Confidence 1 1000000 00011112 226788999999999999999999 9999999998888888888888999999999999
Q ss_pred CCcccccccCCCCCc--cceeEEEE-EEecCCCCCC-CceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCCeE--E
Q 010693 225 FASSFVEYDKPRNHG--YQIAHGIL-AEVESHPFDL-DKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNLV--F 298 (503)
Q Consensus 225 ~~s~vr~~~~~~~~~--~~~~~g~~-~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~--~ 298 (503)
.+|.+|+..+....+ .+..+.+. ..++ .+++. ..... +. .+.| .+..+|..++.. +
T Consensus 163 ~~S~vR~~lgi~f~g~~~~~~~~~~d~~~~-~~~~~~~~~~~--~~----------~~~g-----~~~~~p~~~~~~r~~ 224 (487)
T PRK07190 163 SRSFVRNHFNVPFEIIRPQIIWAVIDGVID-TDFPKVPEIIV--FQ----------AETS-----DVAWIPREGEIDRFY 224 (487)
T ss_pred CCHHHHHHcCCCccccccceeEEEEEEEEc-cCCCCCcceEE--EE----------cCCC-----CEEEEECCCCEEEEE
Confidence 999999976654332 22222222 2222 12211 01111 11 1122 355567766543 2
Q ss_pred EecccccCCCCCCHHHHHHHHHHHHhhcCCccceEeecceecccCCCCCC--CC-CCCEEEeccCCCCcCCcccHHHHHH
Q 010693 299 LEETSLVSRPVLSYKEVKRRMAARLRHMGIRVKRVIEDEKCLIPMGGPLP--VI-PQSVMAIGSTSGLVHPSTGYMVART 375 (503)
Q Consensus 299 v~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~p~~~~~~--~~-~~~v~liGDAa~~~~P~~G~G~~~a 375 (503)
+.. .....+.+++.+.+.+.+....+....+. ....+++..... .. .+||+++|||||.+.|..|||+|++
T Consensus 225 ~~~----~~~~~t~~~~~~~l~~~~~~~~~~~~~~~--w~s~~~~~~r~a~~~r~~gRV~LaGDAAH~h~P~gGQGmN~g 298 (487)
T PRK07190 225 VRM----DTKDFTLEQAIAKINHAMQPHRLGFKEIV--WFSQFSVKESVAEHFFIQDRIFLAGDACHIHSVNGGQGLNTG 298 (487)
T ss_pred EEc----CCCCCCHHHHHHHHHHhcCCCCCceEEEE--EEEEeeeCcEehhhcCcCCcEEEEecccccCCCccccchhhh
Confidence 221 12345667777777665533223333222 223455543332 23 6999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHhcCCCCCCCchhhHHHHhh
Q 010693 376 MALAPALADAIAECLGSTRMIRGRPLHQKVWNG 408 (503)
Q Consensus 376 l~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~ 408 (503)
|+||..|++.|+..+.+......|+.|+...+.
T Consensus 299 iqDA~nL~wkLa~v~~g~a~~~lLdtY~~eR~p 331 (487)
T PRK07190 299 LADAFNLIWKLNMVIHHGASPELLQSYEAERKP 331 (487)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 999999999999988776666789999886654
No 36
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.96 E-value=1.8e-27 Score=244.98 Aligned_cols=305 Identities=18% Similarity=0.205 Sum_probs=184.8
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHccC---CCcEEEEcCCCCCCC--C----Ccccc---hhHhhhhcCchhhhhh-ccCc
Q 010693 83 RIRYDVIIIGTGPAGLRLAEQVSSRH---SVKVCCVDPSPLSTW--P----NNYGV---WVDEFEDIGLVDCLDK-TWPM 149 (503)
Q Consensus 83 ~~~~DvvIVGgGpaGl~~A~~La~~~---G~~V~viE~~~~~~~--~----~~~g~---~~~~l~~~~~~~~~~~-~~~~ 149 (503)
|.++||+||||||||+++|+.|++ + |++|+||||...... + +..+. ....++.+|+.+.+.. ....
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~-~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~ 79 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSR-LSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPI 79 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhh-cccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCc
Confidence 357999999999999999999999 8 999999999532211 1 11222 2345778888544332 2111
Q ss_pred eEEEec-CCcc-------cccC-CCccc-cCHHHHHHHHHHHHHh-CCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEec
Q 010693 150 TCVFIN-DHKT-------KYLD-RPYGR-VSRNILKTKLLENCVS-NGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKAS 217 (503)
Q Consensus 150 ~~~~~~-~~~~-------~~~~-~~~~~-v~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~ 217 (503)
..+.+. .... .... ...++ +++..+.+.|.+.+.+ .|++++ +++|+++..+++.+.|++.+|.++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~ 159 (395)
T PRK05732 80 THIHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGR 159 (395)
T ss_pred cEEEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeC
Confidence 111111 1100 0111 11223 7888999999998876 689999 899999988888888998888889999
Q ss_pred eEEecCCCCcccccccCCCCCccce-eEEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCCe
Q 010693 218 LIVDASGFASSFVEYDKPRNHGYQI-AHGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNL 296 (503)
Q Consensus 218 ~vI~A~G~~s~vr~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~ 296 (503)
+||+|||.+|.+++..+.......+ ...+...+..... .....+.. +...| +++++|.+++.
T Consensus 160 ~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----------~~~~g-----~~~~~p~~~g~ 222 (395)
T PRK05732 160 LLVAADGSHSALREALGIDWQQHPYEQVAVIANVTTSEA-HQGRAFER-----------FTEHG-----PLALLPMSDGR 222 (395)
T ss_pred EEEEecCCChhhHHhhCCCccceecCCEEEEEEEEecCC-CCCEEEEe-----------ecCCC-----CEEEeECCCCC
Confidence 9999999999999865443221111 1112112211111 11111100 11222 46788888775
Q ss_pred EEEecc---ccc-CCCCCCHHHHHHHHHHHHhhcCCccceEeec-ceecccCCC--CCCCCCCCEEEeccCCCCcCCccc
Q 010693 297 VFLEET---SLV-SRPVLSYKEVKRRMAARLRHMGIRVKRVIED-EKCLIPMGG--PLPVIPQSVMAIGSTSGLVHPSTG 369 (503)
Q Consensus 297 ~~v~~~---~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~-~~~~~p~~~--~~~~~~~~v~liGDAa~~~~P~~G 369 (503)
..+... ... .....+.+++.+.+.+.+. +....+... ....+|+.. ..+...+|++++|||||.++|++|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~grv~LvGDAAh~~~P~~G 299 (395)
T PRK05732 223 CSLVWCHPLEDAEEVLSWSDAQFLAELQQAFG---WRLGRITHAGKRSAYPLALVTAAQQISHRLALVGNAAQTLHPIAG 299 (395)
T ss_pred eEEEEECCHHHHHHHHcCCHHHHHHHHHHHHH---hhhcceeecCCcceecccccchhhhccCcEEEEeecccccCCccc
Confidence 432211 000 0012334455555544432 111122111 112233321 112367899999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHhcCCCC---CCCchhhHHHHhh
Q 010693 370 YMVARTMALAPALADAIAECLGSTRM---IRGRPLHQKVWNG 408 (503)
Q Consensus 370 ~G~~~al~~a~~lA~~l~~~l~~~~~---~~~l~~y~~~~~~ 408 (503)
||++.||+||..||++|...+.+..+ ...++.|++.++.
T Consensus 300 qG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~ 341 (395)
T PRK05732 300 QGFNLGLRDVMSLAETLTQALARGEDIGDYAVLQRYQQRRQQ 341 (395)
T ss_pred cccchHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999887654322 2457888877664
No 37
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.96 E-value=2.7e-27 Score=252.47 Aligned_cols=304 Identities=16% Similarity=0.143 Sum_probs=186.0
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCC-CCCcccch---hHhhhhcCchhh-hhhc--cCceEEEec
Q 010693 83 RIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLST-WPNNYGVW---VDEFEDIGLVDC-LDKT--WPMTCVFIN 155 (503)
Q Consensus 83 ~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~-~~~~~g~~---~~~l~~~~~~~~-~~~~--~~~~~~~~~ 155 (503)
...+||+||||||+|+++|+.|++ +|++|+||||.+... .++..+.+ ...|+.+|+.+. .... +....++..
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~-~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 86 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQ-YGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDA 86 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcC
Confidence 567999999999999999999999 999999999987543 34444443 345778888433 3322 333333222
Q ss_pred CCcc-cccC--------CCcc-ccCHHHHHHHHHHHHHh-CCcEEE-EeEEEEEEEeCCEEEEEeC--CC--cEEEeceE
Q 010693 156 DHKT-KYLD--------RPYG-RVSRNILKTKLLENCVS-NGVKFH-KAKVWHVNHQEFESSIVCD--DG--NEIKASLI 219 (503)
Q Consensus 156 ~~~~-~~~~--------~~~~-~v~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~~~~~~v~~~--~g--~~i~a~~v 219 (503)
++.. .... .+.. .+.+..+++.|.+.+.+ .|++++ +++|+++++++++++|++. +| .+++||+|
T Consensus 87 ~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~v 166 (538)
T PRK06183 87 KGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYV 166 (538)
T ss_pred CCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEE
Confidence 2111 0111 1111 26788999999998877 589999 9999999999888888876 46 37999999
Q ss_pred EecCCCCcccccccCCCCCccceeEEE-EEE--ecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCCe
Q 010693 220 VDASGFASSFVEYDKPRNHGYQIAHGI-LAE--VESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNL 296 (503)
Q Consensus 220 I~A~G~~s~vr~~~~~~~~~~~~~~g~-~~~--~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~ 296 (503)
|+|||.+|.+|+..+....+..+...+ .+. ............. .+.+++ .+.++|..++.
T Consensus 167 VgADG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~-----~~~~~p~~~~~ 229 (538)
T PRK06183 167 VGCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIANDPLGGPHTYQ------------YCDPAR-----PYTSVRLPHGR 229 (538)
T ss_pred EecCCCchhHHHHcCCeeeCCCccceEEEEEEecccCccCCCceEE------------EECCCC-----CEEEEEcCCCe
Confidence 999999999999765533222221111 112 1111100001110 111222 24455665553
Q ss_pred EE--Eec-ccccCCCCCCHHHHHHHHHHHHhhcCCccceEeecceecccCCCC--CCCCCCCEEEeccCCCCcCCcccHH
Q 010693 297 VF--LEE-TSLVSRPVLSYKEVKRRMAARLRHMGIRVKRVIEDEKCLIPMGGP--LPVIPQSVMAIGSTSGLVHPSTGYM 371 (503)
Q Consensus 297 ~~--v~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~p~~~~--~~~~~~~v~liGDAa~~~~P~~G~G 371 (503)
.. +.. ...........+.+.+.+..+.. .....++.. ...+.+... .....+||+++|||||.++|+.|||
T Consensus 230 ~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~--~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GQG 305 (538)
T PRK06183 230 RRWEFMLLPGETEEQLASPENVWRLLAPWGP--TPDDAELIR--HAVYTFHARVADRWRSGRVLLAGDAAHLMPPFAGQG 305 (538)
T ss_pred EEEEEEeCCCCChhhcCCHHHHHHHHHhhCC--CCcceEEEE--EEeeeEccEEhhhhccCCEEEEechhhcCCCccccc
Confidence 21 111 10000011133444444433311 111112222 122222211 1235789999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHhcCCCCCCCchhhHHHHhh
Q 010693 372 VARTMALAPALADAIAECLGSTRMIRGRPLHQKVWNG 408 (503)
Q Consensus 372 ~~~al~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~ 408 (503)
+|++|+||..||+.|+..+++......|+.|++.++.
T Consensus 306 ~n~gi~DA~~La~kLa~~~~g~~~~~~L~~Ye~eR~p 342 (538)
T PRK06183 306 MNSGIRDAANLAWKLAAVLRGRAGDALLDTYEQERRP 342 (538)
T ss_pred hhhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 9999999999999999877655555689999987764
No 38
>PRK07588 hypothetical protein; Provisional
Probab=99.96 E-value=2.7e-27 Score=243.20 Aligned_cols=302 Identities=12% Similarity=0.086 Sum_probs=180.8
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCC-CCcccc---hhHhhhhcCchhh-hhhc--cCceEEEecCCc
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTW-PNNYGV---WVDEFEDIGLVDC-LDKT--WPMTCVFINDHK 158 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~-~~~~g~---~~~~l~~~~~~~~-~~~~--~~~~~~~~~~~~ 158 (503)
.||+||||||+|+++|+.|++ +|++|+|+|+.+.... ...++. ....++++|+.+. .... +....+...++.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~-~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~ 79 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRR-YGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGR 79 (391)
T ss_pred CeEEEECccHHHHHHHHHHHH-CCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCC
Confidence 489999999999999999999 9999999999865432 111222 3356788888443 3322 222222211111
Q ss_pred c-c-----ccC----CCccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCc
Q 010693 159 T-K-----YLD----RPYGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFAS 227 (503)
Q Consensus 159 ~-~-----~~~----~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s 227 (503)
. . ... .++..+.|..|.+.|.+.+. .|++++ +++|++++.+++++.|++++|+++++|+||+|||.+|
T Consensus 80 ~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S 158 (391)
T PRK07588 80 RKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAID-GQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHS 158 (391)
T ss_pred EEEEecHHHccccCCCceEEEEHHHHHHHHHHhhh-cCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 1 0 011 12334889999999988654 479999 9999999998889999999999999999999999999
Q ss_pred ccccccCCCCCccceeEEEEE-EecCCCCCC-CceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCCeEE---Eecc
Q 010693 228 SFVEYDKPRNHGYQIAHGILA-EVESHPFDL-DKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNLVF---LEET 302 (503)
Q Consensus 228 ~vr~~~~~~~~~~~~~~g~~~-~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~~---v~~~ 302 (503)
.+|+.............|... ......+.+ ....++. +...| .++..+|..++..+ +...
T Consensus 159 ~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-----------~~~~g----~~~~~~p~~~~~~~~~~~~~~ 223 (391)
T PRK07588 159 HVRRLVFGPERDFEHYLGCKVAACVVDGYRPRDERTYVL-----------YNEVG----RQVARVALRGDRTLFLFIFRA 223 (391)
T ss_pred cchhhccCCccceEEEcCcEEEEEEcCCCCCCCCceEEE-----------EeCCC----CEEEEEecCCCCeEEEEEEEc
Confidence 999853222211112222211 111111111 1111111 11122 25677787666432 1111
Q ss_pred cccCCCCCCHHHHHHHHHHHHhhcCCccceEee----cceecc-cCC-CCCC-CCCCCEEEeccCCCCcCCcccHHHHHH
Q 010693 303 SLVSRPVLSYKEVKRRMAARLRHMGIRVKRVIE----DEKCLI-PMG-GPLP-VIPQSVMAIGSTSGLVHPSTGYMVART 375 (503)
Q Consensus 303 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~~----~~~~~~-p~~-~~~~-~~~~~v~liGDAa~~~~P~~G~G~~~a 375 (503)
.. .....+.+...+.+.+.+....+....+.+ .....+ +.. ...+ ...+||+++|||||.++|+.|||+|+|
T Consensus 224 ~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~a 302 (391)
T PRK07588 224 EH-DNPPLTPAEEKQLLRDQFGDVGWETPDILAALDDVEDLYFDVVSQIRMDRWSRGRVALVGDAAACPSLLGGEGSGLA 302 (391)
T ss_pred CC-ccccCCHHHHHHHHHHHhccCCccHHHHHHhhhcccchheeeeeeeccCccccCCEEEEEccccCCCCccCCcHHHH
Confidence 11 112334455566666655443322111111 000111 111 1112 257899999999999999999999999
Q ss_pred HHhHHHHHHHHHHHhcCCCCCCCchhhHHHHh
Q 010693 376 MALAPALADAIAECLGSTRMIRGRPLHQKVWN 407 (503)
Q Consensus 376 l~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~ 407 (503)
|+||..||+.|.... .+....++.|++.++
T Consensus 303 ieDa~~La~~L~~~~--~~~~~al~~Y~~~R~ 332 (391)
T PRK07588 303 ITEAYVLAGELARAG--GDHRRAFDAYEKRLR 332 (391)
T ss_pred HHHHHHHHHHHHhcc--CCHHHHHHHHHHHHH
Confidence 999999999997532 122346777877654
No 39
>PRK07045 putative monooxygenase; Reviewed
Probab=99.96 E-value=3.6e-27 Score=241.98 Aligned_cols=304 Identities=15% Similarity=0.175 Sum_probs=182.6
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCC-Ccc---cchhHhhhhcCchhhhhhc----cCceEEEec
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWP-NNY---GVWVDEFEDIGLVDCLDKT----WPMTCVFIN 155 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~-~~~---g~~~~~l~~~~~~~~~~~~----~~~~~~~~~ 155 (503)
..+||+||||||+|+++|+.|++ +|++|+|+|+.+..... ... ......|+.+|+.+.+... .....++.+
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~-~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~ 82 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGA-RGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHD 82 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHh-cCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecC
Confidence 46899999999999999999999 99999999998765321 111 1233467788885443321 111222222
Q ss_pred CCccccc------CCCcc-ccCHHHHHHHHHHHHHh-CCcEEE-EeEEEEEEEeCCE--EEEEeCCCcEEEeceEEecCC
Q 010693 156 DHKTKYL------DRPYG-RVSRNILKTKLLENCVS-NGVKFH-KAKVWHVNHQEFE--SSIVCDDGNEIKASLIVDASG 224 (503)
Q Consensus 156 ~~~~~~~------~~~~~-~v~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~~~~--~~v~~~~g~~i~a~~vI~A~G 224 (503)
+...... ...+. .+.|..+.+.|.+.+.. .|++++ +++|++++.++++ +.|++.+|+++++|+||+|||
T Consensus 83 g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG 162 (388)
T PRK07045 83 KELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADG 162 (388)
T ss_pred CcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCC
Confidence 1111101 11221 27899999999998864 789999 9999999987654 468888899999999999999
Q ss_pred CCcccccc-cCCCC--Cc--cceeEEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCCeEE-
Q 010693 225 FASSFVEY-DKPRN--HG--YQIAHGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNLVF- 298 (503)
Q Consensus 225 ~~s~vr~~-~~~~~--~~--~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~~- 298 (503)
.+|.+|+. .+... .. .....+.... .. .. .+....+ +... .+++|++|.+++...
T Consensus 163 ~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~-~~~~~~~------------~~~~----~~~~~~~p~~~~~~~~ 223 (388)
T PRK07045 163 ARSMIRDDVLRMPAERVPYATPMAFGTIAL-TD-SV-RECNRLY------------VDSN----QGLAYFYPIGDQATRL 223 (388)
T ss_pred CChHHHHHhhCCCcccCCCCcceeEEEEec-cC-Cc-cccceEE------------EcCC----CceEEEEEcCCCcEEE
Confidence 99999985 32211 11 1122333221 11 11 1111110 1111 246788888766432
Q ss_pred -Eecc-cccC-C-CCCCHHHHHHHHHHHHhhcCCc-cceEeec-ceecccCCCCC--CCCCCCEEEeccCCCCcCCcccH
Q 010693 299 -LEET-SLVS-R-PVLSYKEVKRRMAARLRHMGIR-VKRVIED-EKCLIPMGGPL--PVIPQSVMAIGSTSGLVHPSTGY 370 (503)
Q Consensus 299 -v~~~-~~~~-~-~~~~~~~~~~~l~~~l~~~~~~-~~~i~~~-~~~~~p~~~~~--~~~~~~v~liGDAa~~~~P~~G~ 370 (503)
+..+ .... . .....+++.+.+.+++...... +..+... ....+|+.... +...+||+++|||||.++|++||
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~Gq 303 (388)
T PRK07045 224 VVSFPADEMQGYLADTTRTKLLARLNEFVGDESADAMAAIGAGTAFPLIPLGRMNLDRYHKRNVVLLGDAAHSIHPITGQ 303 (388)
T ss_pred EEEeccccchhccCCCCHHHHHHHHhhhcCccchHHHhccCcccccceeecCccccccccCCCEEEEEccccccCCCccc
Confidence 2111 1100 0 1123445555555544211000 1111111 11123443321 23679999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHhcCCC-CCCCchhhHHHHh
Q 010693 371 MVARTMALAPALADAIAECLGSTR-MIRGRPLHQKVWN 407 (503)
Q Consensus 371 G~~~al~~a~~lA~~l~~~l~~~~-~~~~l~~y~~~~~ 407 (503)
|++.|++||..||+.|...+.+.. ....++.|++.++
T Consensus 304 G~n~ai~Da~~La~~L~~~~~~~~~~~~~L~~Ye~~R~ 341 (388)
T PRK07045 304 GMNLAIEDAGELGACLDLHLSGQIALADALERFERIRR 341 (388)
T ss_pred cHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhh
Confidence 999999999999999998764332 2346777776544
No 40
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.96 E-value=1e-26 Score=250.51 Aligned_cols=308 Identities=17% Similarity=0.188 Sum_probs=192.7
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHccC-CCcEEEEcCCCCCC-CCCcccc---hhHhhhhcCchhhhh-hccCc--eEEEe
Q 010693 83 RIRYDVIIIGTGPAGLRLAEQVSSRH-SVKVCCVDPSPLST-WPNNYGV---WVDEFEDIGLVDCLD-KTWPM--TCVFI 154 (503)
Q Consensus 83 ~~~~DvvIVGgGpaGl~~A~~La~~~-G~~V~viE~~~~~~-~~~~~g~---~~~~l~~~~~~~~~~-~~~~~--~~~~~ 154 (503)
..++||+||||||+||++|+.|++ . |++|+|||+.+... ..+..|. .++.|+.+|+.+.+. ..... ..++-
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar-~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~ 108 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSA-FPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWK 108 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhc-CCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEc
Confidence 347999999999999999999999 8 99999999986532 2333444 345678888844432 22111 11111
Q ss_pred cCCc--c--------c----cc-CCCccccCHHHHHHHHHHHHHhCC--cEEE-EeEEEEEEEeCC---EEEEEeC----
Q 010693 155 NDHK--T--------K----YL-DRPYGRVSRNILKTKLLENCVSNG--VKFH-KAKVWHVNHQEF---ESSIVCD---- 209 (503)
Q Consensus 155 ~~~~--~--------~----~~-~~~~~~v~r~~l~~~L~~~~~~~g--v~~~-~~~v~~i~~~~~---~~~v~~~---- 209 (503)
.+.. . . .. ..++..+++..+++.|.+.+.+.| +++. ++++++++.+++ .++|++.
T Consensus 109 ~~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~ 188 (634)
T PRK08294 109 PDPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDG 188 (634)
T ss_pred CCCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCC
Confidence 1100 0 0 00 112223788999999999998766 4667 899999987642 4677664
Q ss_pred --CC--cEEEeceEEecCCCCcccccccCCCCCcc--ceeEEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCC
Q 010693 210 --DG--NEIKASLIVDASGFASSFVEYDKPRNHGY--QIAHGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKL 283 (503)
Q Consensus 210 --~g--~~i~a~~vI~A~G~~s~vr~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~ 283 (503)
+| ++++||+||+|||.+|.||+..+....+. ...+++........+........ +. ...+
T Consensus 189 ~~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~~v~dv~~~~~~p~~~~~~~-~~---------~~~~---- 254 (634)
T PRK08294 189 EHEGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHAWGVMDVLAVTDFPDIRLKCA-IQ---------SASE---- 254 (634)
T ss_pred CCCCceEEEEeCEEEECCCCchHHHHhcCCCccCCcccceEEEEEEEEccCCCCcceEEE-Ee---------cCCC----
Confidence 35 47999999999999999999775533322 22233322221122221111110 00 0112
Q ss_pred CeEEEEeecCCCe-E--EEecccc-----cCCCCCCHHHHHHHHHHHHhhcCCccceEeecceecccCCCCCC-------
Q 010693 284 PTFLYAMPFDSNL-V--FLEETSL-----VSRPVLSYKEVKRRMAARLRHMGIRVKRVIEDEKCLIPMGGPLP------- 348 (503)
Q Consensus 284 ~~~~~~~P~~~~~-~--~v~~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~p~~~~~~------- 348 (503)
+.+.++|..++. + ++..... ......+.+++.+.+.+.+.........+. ....++++....
T Consensus 255 -g~~~~~P~~~g~~~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~p~~~~~~~v~--w~s~y~i~~r~a~~f~~~~ 331 (634)
T PRK08294 255 -GSILLIPREGGYLVRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRILHPYTLDVKEVA--WWSVYEVGQRLTDRFDDVP 331 (634)
T ss_pred -ceEEEEECCCCeEEEEEEecCcCCCccccccccCCHHHHHHHHHHhcCCCCCceeEEe--EEecccccceehhhccccc
Confidence 346677887763 2 1221111 111345677888877766643323333222 123344322211
Q ss_pred -----CCCCCEEEeccCCCCcCCcccHHHHHHHHhHHHHHHHHHHHhcCCCCCCCchhhHHHHhh
Q 010693 349 -----VIPQSVMAIGSTSGLVHPSTGYMVARTMALAPALADAIAECLGSTRMIRGRPLHQKVWNG 408 (503)
Q Consensus 349 -----~~~~~v~liGDAa~~~~P~~G~G~~~al~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~ 408 (503)
...+||+++|||||.++|..|||+|++|+||..||+.|+..+.+....+.|+.|+...+.
T Consensus 332 ~~~~~~r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~g~a~~~lL~tYe~ERrp 396 (634)
T PRK08294 332 AEEAGTRLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSGRSPPELLHTYSAERQA 396 (634)
T ss_pred ccccccccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 125899999999999999999999999999999999999988766566789999887654
No 41
>PRK06185 hypothetical protein; Provisional
Probab=99.96 E-value=5.3e-27 Score=242.36 Aligned_cols=305 Identities=17% Similarity=0.130 Sum_probs=184.0
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCC-CCcccc---hhHhhhhcCchhhhhh-c---cCceEEEec
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTW-PNNYGV---WVDEFEDIGLVDCLDK-T---WPMTCVFIN 155 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~-~~~~g~---~~~~l~~~~~~~~~~~-~---~~~~~~~~~ 155 (503)
.++||+||||||+|+++|+.|++ .|++|+|||+.+.... .+.... ....++.+|+.+.+.. . +....+...
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~-~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~ 83 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLAR-AGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIG 83 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHh-CCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEEC
Confidence 56999999999999999999999 9999999999764321 122211 2345777887443322 1 112222212
Q ss_pred CCcc-------cccCCCccc-cCHHHHHHHHHHHHHh-CCcEEE-EeEEEEEEEeCCEE---EEEeCCCc-EEEeceEEe
Q 010693 156 DHKT-------KYLDRPYGR-VSRNILKTKLLENCVS-NGVKFH-KAKVWHVNHQEFES---SIVCDDGN-EIKASLIVD 221 (503)
Q Consensus 156 ~~~~-------~~~~~~~~~-v~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~~~~~---~v~~~~g~-~i~a~~vI~ 221 (503)
+... .....++++ +.+..+.+.|.+.+.+ .|++++ +++|+++..+++.+ .+...+|+ +++|++||+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~ 163 (407)
T PRK06185 84 GRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVG 163 (407)
T ss_pred CeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEE
Confidence 1110 011123443 7889999999998876 589999 99999998877754 33445664 799999999
Q ss_pred cCCCCcccccccCCCCCccce-eEEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCCeEEEe
Q 010693 222 ASGFASSFVEYDKPRNHGYQI-AHGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNLVFLE 300 (503)
Q Consensus 222 A~G~~s~vr~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~~v~ 300 (503)
|||.+|.+|+..+.....+.+ ...+...++....... . .+..+.++ ++++++|.+ +...+.
T Consensus 164 AdG~~S~vr~~~gi~~~~~~~~~~~~~~~~~~~~~~~~-~-----------~~~~~~~~-----g~~~llP~~-~~~~i~ 225 (407)
T PRK06185 164 ADGRHSRVRALAGLEVREFGAPMDVLWFRLPREPDDPE-S-----------LMGRFGPG-----QGLIMIDRG-DYWQCG 225 (407)
T ss_pred CCCCchHHHHHcCCCccccCCCceeEEEecCCCCCCCc-c-----------cceEecCC-----cEEEEEcCC-CeEEEE
Confidence 999999999876543322111 1112122221110000 0 11112223 357888887 433222
Q ss_pred ---cccccCC-CCCCHHHHHHHHHHHHhhcCCccceEee-cceecccCCCC--CCCCCCCEEEeccCCCCcCCcccHHHH
Q 010693 301 ---ETSLVSR-PVLSYKEVKRRMAARLRHMGIRVKRVIE-DEKCLIPMGGP--LPVIPQSVMAIGSTSGLVHPSTGYMVA 373 (503)
Q Consensus 301 ---~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~i~~-~~~~~~p~~~~--~~~~~~~v~liGDAa~~~~P~~G~G~~ 373 (503)
....... ...+.+.+.+.+.+.++........+.. .....+|+... .....+|++++|||||.++|.+|||+|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n 305 (407)
T PRK06185 226 YVIPKGGYAALRAAGLEAFRERVAELAPELADRVAELKSWDDVKLLDVRVDRLRRWHRPGLLCIGDAAHAMSPVGGVGIN 305 (407)
T ss_pred EEecCCCchhhhhhhHHHHHHHHHHhCccHHHHHhhcCCccccEEEEEeccccccccCCCeEEEeccccccCcccccchh
Confidence 2111111 2234455555555554332211221111 11233443222 223678999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHhcCCC-CCCCchhhHHHHh
Q 010693 374 RTMALAPALADAIAECLGSTR-MIRGRPLHQKVWN 407 (503)
Q Consensus 374 ~al~~a~~lA~~l~~~l~~~~-~~~~l~~y~~~~~ 407 (503)
.|++||..||+.|.+.+..++ ....|+.|++.++
T Consensus 306 lgl~Da~~La~~l~~~~~~~~~~~~~L~~Y~~~R~ 340 (407)
T PRK06185 306 LAIQDAVAAANILAEPLRRGRVSDRDLAAVQRRRE 340 (407)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHhh
Confidence 999999999999999886553 2245777776433
No 42
>PRK06996 hypothetical protein; Provisional
Probab=99.96 E-value=6.9e-27 Score=240.49 Aligned_cols=300 Identities=15% Similarity=0.153 Sum_probs=180.8
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHccCC----CcEEEEcCCCCCCC---CCcccc---hhHhhhhcCchhhhhhccCceEE
Q 010693 83 RIRYDVIIIGTGPAGLRLAEQVSSRHS----VKVCCVDPSPLSTW---PNNYGV---WVDEFEDIGLVDCLDKTWPMTCV 152 (503)
Q Consensus 83 ~~~~DvvIVGgGpaGl~~A~~La~~~G----~~V~viE~~~~~~~---~~~~g~---~~~~l~~~~~~~~~~~~~~~~~~ 152 (503)
...+||+||||||+|+++|+.|++ +| ++|+|+|+.+.... ++.... ....|+.+|+.+..........+
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~-~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~ 87 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLAR-RSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHV 87 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhc-CCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEE
Confidence 356899999999999999999999 87 47999999754321 122222 22357777774322111111111
Q ss_pred EecCCc------cccc-CCCccc-cCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCC---cEEEeceEE
Q 010693 153 FINDHK------TKYL-DRPYGR-VSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDG---NEIKASLIV 220 (503)
Q Consensus 153 ~~~~~~------~~~~-~~~~~~-v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g---~~i~a~~vI 220 (503)
.-.... .... ....++ ++|..+.+.|.+.+.+.|++++ ++++++++.+++++++.+.+| ++++||+||
T Consensus 88 ~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvI 167 (398)
T PRK06996 88 SQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAV 167 (398)
T ss_pred ecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEE
Confidence 100100 0011 123355 8999999999999999999999 999999998888899988754 589999999
Q ss_pred ecCCC-CcccccccCCCCCccce-eEEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCCe--
Q 010693 221 DASGF-ASSFVEYDKPRNHGYQI-AHGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNL-- 296 (503)
Q Consensus 221 ~A~G~-~s~vr~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~-- 296 (503)
+|||. +|.+|+..........+ ...+...++. ....+...+.. +.+.| ++.++|..++.
T Consensus 168 gADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~-----------~~~~G-----~~~~lp~~~~~~~ 230 (398)
T PRK06996 168 QAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTV-SAPRPGWAWER-----------FTHEG-----PLALLPLGGPRQA 230 (398)
T ss_pred ECCCCCchHHHHHcCCCceeeecCCeEEEEEEEc-cCCCCCEEEEE-----------ecCCC-----CeEEeECCCCCCC
Confidence 99996 56666654333221111 1233333331 11111111111 22233 35666776432
Q ss_pred --EEE--ecccccC-CCCCCHHHHHHHHHHHHhhcCCccceEe-ecceecccCCCCC--CCCCCCEEEeccCCCCcCCcc
Q 010693 297 --VFL--EETSLVS-RPVLSYKEVKRRMAARLRHMGIRVKRVI-EDEKCLIPMGGPL--PVIPQSVMAIGSTSGLVHPST 368 (503)
Q Consensus 297 --~~v--~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~i~-~~~~~~~p~~~~~--~~~~~~v~liGDAa~~~~P~~ 368 (503)
.++ ....... ....+.+++.+.+.+.+... ...+. ......+|+.... ....+||+++|||||.++|+.
T Consensus 231 ~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~ 307 (398)
T PRK06996 231 DYALVWCCAPDEAARRAALPDDAFLAELGAAFGTR---MGRFTRIAGRHAFPLGLNAARTLVNGRIAAVGNAAQTLHPVA 307 (398)
T ss_pred cEEEEEECCHHHHHHHHcCCHHHHHHHHHHHhccc---cCceEEecceEEEeeecccccceecCCEEEEEhhhccCCccc
Confidence 222 1111100 12234556666666655432 11111 1112245544222 236799999999999999999
Q ss_pred cHHHHHHHHhHHHHHHHHHHHhcCCCCCCCchhhHHHH
Q 010693 369 GYMVARTMALAPALADAIAECLGSTRMIRGRPLHQKVW 406 (503)
Q Consensus 369 G~G~~~al~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~ 406 (503)
|||+|+||+||..||++|... +.....|+.|++..
T Consensus 308 GQG~n~ai~Da~~La~~L~~~---~~~~~~L~~Y~~~R 342 (398)
T PRK06996 308 GQGLNLGLRDAHTLADALSDH---GATPLALATFAARR 342 (398)
T ss_pred chhHHHHHHHHHHHHHHHHhc---CCcHHHHHHHHHHH
Confidence 999999999999999999752 22234577887654
No 43
>PRK06753 hypothetical protein; Provisional
Probab=99.96 E-value=4.4e-27 Score=240.18 Aligned_cols=296 Identities=13% Similarity=0.135 Sum_probs=174.8
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCC-Ccccc---hhHhhhhcCchhhhhh-c--cCceEEEecCCc
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWP-NNYGV---WVDEFEDIGLVDCLDK-T--WPMTCVFINDHK 158 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~-~~~g~---~~~~l~~~~~~~~~~~-~--~~~~~~~~~~~~ 158 (503)
.||+||||||||+++|+.|++ +|++|+|+||.+..... ...+. ....++.+|+.+.+.. . .....+...++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~-~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~ 79 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQE-QGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGT 79 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCC
Confidence 379999999999999999999 99999999998764321 11222 3345677777443322 1 222222222221
Q ss_pred c-cccC---CCcc-ccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCcccccc
Q 010693 159 T-KYLD---RPYG-RVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSFVEY 232 (503)
Q Consensus 159 ~-~~~~---~~~~-~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~vr~~ 232 (503)
. .... .+.+ .++|..|.+.|.+.+. +.+++ +++|++++.+++++.|++++|+++++|+||+|||.+|.+|+.
T Consensus 80 ~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~vR~~ 157 (373)
T PRK06753 80 LLNKVKLKSNTLNVTLHRQTLIDIIKSYVK--EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSKVRQS 157 (373)
T ss_pred EEeecccccCCccccccHHHHHHHHHHhCC--CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchHHHHH
Confidence 1 0111 1122 3899999999988764 35777 999999998888899999999999999999999999999997
Q ss_pred cCCCCC-ccceeEEEEEEecCCCCCC-CceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCCeEEEeccc--c-cC-
Q 010693 233 DKPRNH-GYQIAHGILAEVESHPFDL-DKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNLVFLEETS--L-VS- 306 (503)
Q Consensus 233 ~~~~~~-~~~~~~g~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~~v~~~~--~-~~- 306 (503)
..+... .+.....+...+....... +... .+... .++++++|..++........ . ..
T Consensus 158 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------------~~~~~----~g~~~~~p~~~~~~~~~~~~~~~~~~~ 220 (373)
T PRK06753 158 VNADSKVRYQGYTCFRGLIDDIDLKLPDCAK-------------EYWGT----KGRFGIVPLLNNQAYWFITINAKERDP 220 (373)
T ss_pred hCCCCCceEcceEEEEEEeccccccCccceE-------------EEEcC----CCEEEEEEcCCCeEEEEEEeccccCCc
Confidence 554322 1111112222222111111 1110 01111 13577888887643211110 0 00
Q ss_pred -CCCCCHHHHHHHHHHHHhhcCCccceEeec----cee---cccCCCCCCCCCCCEEEeccCCCCcCCcccHHHHHHHHh
Q 010693 307 -RPVLSYKEVKRRMAARLRHMGIRVKRVIED----EKC---LIPMGGPLPVIPQSVMAIGSTSGLVHPSTGYMVARTMAL 378 (503)
Q Consensus 307 -~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~----~~~---~~p~~~~~~~~~~~v~liGDAa~~~~P~~G~G~~~al~~ 378 (503)
....+.+.+.+ ++......+..+.+. ... .+.+........+|++++|||||.++|..|||+|+||+|
T Consensus 221 ~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LiGDAAh~~~P~~GqG~n~ai~D 296 (373)
T PRK06753 221 KYSSFGKPHLQA----YFNHYPNEVREILDKQSETGILHHDIYDLKPLKSFVYGRIVLLGDAAHATTPNMGQGAGQAMED 296 (373)
T ss_pred ccccccHHHHHH----HHhcCChHHHHHHHhCCcccceeeccccccccccccCCCEEEEecccccCCCCcCccHHHHHHH
Confidence 01112233333 322221111111110 000 111111112257899999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCchhhHHHHhhc
Q 010693 379 APALADAIAECLGSTRMIRGRPLHQKVWNGL 409 (503)
Q Consensus 379 a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~ 409 (503)
|..|++.|... +....++.|++.++..
T Consensus 297 a~~L~~~L~~~----~~~~al~~Y~~~r~~~ 323 (373)
T PRK06753 297 AIVLANCLNAY----DFEKALQRYDKIRVKH 323 (373)
T ss_pred HHHHHHHhhhc----cHHHHHHHHHHHhhHH
Confidence 99999998531 2235678888777653
No 44
>PRK07538 hypothetical protein; Provisional
Probab=99.96 E-value=8e-27 Score=241.25 Aligned_cols=300 Identities=20% Similarity=0.230 Sum_probs=171.3
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccc-----hhHhhhhcCchhhhhh-cc--CceEEEecCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGV-----WVDEFEDIGLVDCLDK-TW--PMTCVFINDH 157 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~-----~~~~l~~~~~~~~~~~-~~--~~~~~~~~~~ 157 (503)
.||+||||||+||++|+.|++ +|++|+|||+.+... +...|. ....|+.+|+.+.+.. .. ....++...+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~-~G~~v~v~E~~~~~~-~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g 78 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQ-RGIEVVVFEAAPELR-PLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHG 78 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHh-CCCcEEEEEcCCccc-ccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCC
Confidence 489999999999999999999 999999999987543 223332 3455778888544332 21 2222222111
Q ss_pred ccc---------ccCCCccccCHHHHHHHHHHHHHh-CC-cEEE-EeEEEEEEEeCCEEEEEeCCC-----cEEEeceEE
Q 010693 158 KTK---------YLDRPYGRVSRNILKTKLLENCVS-NG-VKFH-KAKVWHVNHQEFESSIVCDDG-----NEIKASLIV 220 (503)
Q Consensus 158 ~~~---------~~~~~~~~v~r~~l~~~L~~~~~~-~g-v~~~-~~~v~~i~~~~~~~~v~~~~g-----~~i~a~~vI 220 (503)
... ....+...++|..|.+.|.+.+.+ .| .+++ +++|++++.+++++.+.+.++ ++++||+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvI 158 (413)
T PRK07538 79 QRIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLI 158 (413)
T ss_pred CEEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEE
Confidence 100 001111238999999999999866 46 4688 999999998777666666443 389999999
Q ss_pred ecCCCCcccccccCCCCC--ccceeEEEEEEecCCCCCCC-ceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCC--
Q 010693 221 DASGFASSFVEYDKPRNH--GYQIAHGILAEVESHPFDLD-KMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSN-- 295 (503)
Q Consensus 221 ~A~G~~s~vr~~~~~~~~--~~~~~~g~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~-- 295 (503)
+|||.+|.+|+...+... .+.....+...++.+++... .+.++ .. .+ ..++++|..++
T Consensus 159 gADG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--g~-----------~~----~~~~~~p~~~~~~ 221 (413)
T PRK07538 159 GADGIHSAVRAQLYPDEGPPRWNGVMMWRGVTEAPPFLTGRSMVMA--GH-----------LD----GKLVVYPISEPVD 221 (413)
T ss_pred ECCCCCHHHhhhhcCCCCCCcccceEEEEEeecCccccCCCcEEEE--cC-----------CC----CEEEEEECCCCcc
Confidence 999999999987654321 11111111111222222111 11111 00 00 12333343321
Q ss_pred ------eEEEecccc-----cC----CCCCCHHHHHHHHHHHHhhcCCccceEee--cceecccCCC--CCC-CCCCCEE
Q 010693 296 ------LVFLEETSL-----VS----RPVLSYKEVKRRMAARLRHMGIRVKRVIE--DEKCLIPMGG--PLP-VIPQSVM 355 (503)
Q Consensus 296 ------~~~v~~~~~-----~~----~~~~~~~~~~~~l~~~l~~~~~~~~~i~~--~~~~~~p~~~--~~~-~~~~~v~ 355 (503)
..|+-.... .. ......+++.+.+..+.... ..+..++. .....+|+.. +.+ ...+||+
T Consensus 222 ~~g~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~p~~~~~~~~~w~~grv~ 300 (413)
T PRK07538 222 ADGRQLINWVAEVRVDDAGAPRREDWNRPGDLEDFLPHFADWRFDW-LDVPALIRAAEAIYEYPMVDRDPLPRWTRGRVT 300 (413)
T ss_pred cCCceEEEEEEEEcCCccCCCcccccCCccCHHHHHHHhcCCCCCc-ccHHHHHhcCcceeeccccccCCCCcccCCcEE
Confidence 112111000 00 01112233333222211100 00111111 1122345432 223 2678999
Q ss_pred EeccCCCCcCCcccHHHHHHHHhHHHHHHHHHHHhcCCCCCCCchhhHHHHhh
Q 010693 356 AIGSTSGLVHPSTGYMVARTMALAPALADAIAECLGSTRMIRGRPLHQKVWNG 408 (503)
Q Consensus 356 liGDAa~~~~P~~G~G~~~al~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~ 408 (503)
|+|||||.++|++|||+++||+||..||++|.+. ++....+..|++.|+.
T Consensus 301 LvGDAAH~~~P~~GqG~~~Ai~Da~~La~~L~~~---~~~~~aL~~Ye~~R~~ 350 (413)
T PRK07538 301 LLGDAAHPMYPVGSNGASQAILDARALADALAAH---GDPEAALAAYEAERRP 350 (413)
T ss_pred EEeeccCcCCCCCcccHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHhhH
Confidence 9999999999999999999999999999999863 2234578888877664
No 45
>PRK06847 hypothetical protein; Provisional
Probab=99.95 E-value=2.8e-26 Score=234.37 Aligned_cols=300 Identities=18% Similarity=0.210 Sum_probs=178.7
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccc-----hhHhhhhcCchh-hhhhccC--ceEEEecC
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGV-----WVDEFEDIGLVD-CLDKTWP--MTCVFIND 156 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~-----~~~~l~~~~~~~-~~~~~~~--~~~~~~~~ 156 (503)
..||+||||||+|+++|+.|++ .|++|+|+|+.+.... ...|. ....++.+|+.+ ....... ...++...
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~-~g~~v~v~E~~~~~~~-~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~ 81 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRR-AGIAVDLVEIDPEWRV-YGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPD 81 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHh-CCCCEEEEecCCCCcc-CCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCC
Confidence 5799999999999999999999 9999999999865322 12222 234567777733 3332222 22222111
Q ss_pred Ccc-ccc------C---CCccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCC
Q 010693 157 HKT-KYL------D---RPYGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGF 225 (503)
Q Consensus 157 ~~~-~~~------~---~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~ 225 (503)
+.. ... . .....++|..+.+.|.+.+.+.|++++ +++|++++.+++.+.|.+.+|+++.||+||+|||.
T Consensus 82 g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~ 161 (375)
T PRK06847 82 GTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGL 161 (375)
T ss_pred CCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCC
Confidence 110 000 0 112247899999999999988999999 89999999888888899989999999999999999
Q ss_pred Cccccccc-CCCC-CccceeEEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCCeEEEeccc
Q 010693 226 ASSFVEYD-KPRN-HGYQIAHGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNLVFLEETS 303 (503)
Q Consensus 226 ~s~vr~~~-~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~~v~~~~ 303 (503)
+|.+|+.. +... ..+.....+...++.+. ..+.... |. ..+ ..+.++|.+++..+.-...
T Consensus 162 ~s~~r~~l~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~--~~-----------~~~----~~~~~~p~~~~~~~~~~~~ 223 (375)
T PRK06847 162 YSKVRSLVFPDEPEPEYTGQGVWRAVLPRPA-EVDRSLM--YL-----------GPT----TKAGVVPLSEDLMYLFVTE 223 (375)
T ss_pred CcchhhHhcCCCCCceeccceEEEEEecCCC-CccceEE--Ee-----------CCC----cEEEEEcCCCCeEEEEEec
Confidence 99998754 2211 11111111211222211 1111111 11 111 2355667776644321110
Q ss_pred -ccCCCCCCHHHHHHHHHHHHhhcCC-ccceE---ee--cceecccCCCC---CCCCCCCEEEeccCCCCcCCcccHHHH
Q 010693 304 -LVSRPVLSYKEVKRRMAARLRHMGI-RVKRV---IE--DEKCLIPMGGP---LPVIPQSVMAIGSTSGLVHPSTGYMVA 373 (503)
Q Consensus 304 -~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~i---~~--~~~~~~p~~~~---~~~~~~~v~liGDAa~~~~P~~G~G~~ 373 (503)
.......+.+.+.+.+.+.+..... ....+ .. ......|+... .+...+||+++|||||.+.|++|||+|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAaH~~~P~~GqG~n 303 (375)
T PRK06847 224 PRPDNPRIEPDTLAALLRELLAPFGGPVLQELREQITDDAQVVYRPLETLLVPAPWHRGRVVLIGDAAHATTPHLAQGAG 303 (375)
T ss_pred cCcccccCChHHHHHHHHHHHhhcCchHHHHHHHhcCCccceeeccHhhccCCCCccCCeEEEEechhccCCCCccccHH
Confidence 1011122334444545544443321 11111 11 11112233221 123578999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHhcCCCCCCCchhhHHHHh
Q 010693 374 RTMALAPALADAIAECLGSTRMIRGRPLHQKVWN 407 (503)
Q Consensus 374 ~al~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~ 407 (503)
.|++||..||+.|.+. ......++.|++..+
T Consensus 304 ~aieDA~~La~~L~~~---~~~~~al~~Y~~~R~ 334 (375)
T PRK06847 304 MAIEDAIVLAEELARH---DSLEAALQAYYARRW 334 (375)
T ss_pred HHHHHHHHHHHHHhhC---CcHHHHHHHHHHHHH
Confidence 9999999999999752 112345677776543
No 46
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.95 E-value=1.9e-26 Score=237.41 Aligned_cols=305 Identities=16% Similarity=0.175 Sum_probs=176.1
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCC-CCccc---chhHhhhhcCchhhhhh-ccCceEEEecCCcc-
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTW-PNNYG---VWVDEFEDIGLVDCLDK-TWPMTCVFINDHKT- 159 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~-~~~~g---~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~- 159 (503)
-+|+||||||+||++|+.|++ +|++|+|+|+.+.... ....+ .....|+.+|+.+.+.. ......+.+.++..
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~-~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~ 81 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA-RGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKA 81 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh-CCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCc
Confidence 479999999999999999999 9999999999865321 12222 23345778888544322 22222222222110
Q ss_pred -------------cccCCCccccCHHHHHHHHHHHHHh-CCcEEE-EeEEEEEEEeCCEEEEEe---CCCcEEEeceEEe
Q 010693 160 -------------KYLDRPYGRVSRNILKTKLLENCVS-NGVKFH-KAKVWHVNHQEFESSIVC---DDGNEIKASLIVD 221 (503)
Q Consensus 160 -------------~~~~~~~~~v~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~~~~~~v~~---~~g~~i~a~~vI~ 221 (503)
.....+|..+.|..|.+.|.+.+.+ .|++++ +++|++++.+++.+.+++ .++++++||+||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIg 161 (400)
T PRK06475 82 RPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIA 161 (400)
T ss_pred ceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEE
Confidence 0011234347999999999999876 589999 999999998888887776 3345799999999
Q ss_pred cCCCCcccccccCCCCCccceeEEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCCeEE--E
Q 010693 222 ASGFASSFVEYDKPRNHGYQIAHGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNLVF--L 299 (503)
Q Consensus 222 A~G~~s~vr~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~~--v 299 (503)
|||.+|.+|+..+.....+.....+...+........ ... .+ .+......+...+ +.+..+|..++..+ +
T Consensus 162 ADG~~S~vR~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~-~~--~~~~~~~~~~g~~----~~~~~~p~~~~~~~~~~ 233 (400)
T PRK06475 162 CDGVWSMLRAKAGFSKARFSGHIAWRTTLAADALPAS-FLS-AM--PEHKAVSAWLGNK----AHFIAYPVKGGKFFNFV 233 (400)
T ss_pred CCCccHhHHhhcCCCCCCcCCceEEEEEeehhhcchh-hhh-hc--ccCCceEEEEcCC----CEEEEEEccCCcEEEEE
Confidence 9999999999754322222222222222211111110 000 00 0000011111111 34666787765322 1
Q ss_pred --ecc---cccCCCCCCHHHHHHHHHHHHhhcCCccceEee--cceecccCCCCC--CC-CCCCEEEeccCCCCcCCccc
Q 010693 300 --EET---SLVSRPVLSYKEVKRRMAARLRHMGIRVKRVIE--DEKCLIPMGGPL--PV-IPQSVMAIGSTSGLVHPSTG 369 (503)
Q Consensus 300 --~~~---~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~~--~~~~~~p~~~~~--~~-~~~~v~liGDAa~~~~P~~G 369 (503)
... ........+.+.+.+.+..+.+ .+..+++ .....+|+.... +. ..+||+++|||||.++|+.|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~i~~~~~~~~~~l~~~~~~~~~~~grvvLiGDAAH~~~P~~G 309 (400)
T PRK06475 234 AITGGENPGEVWSKTGDKAHLKSIYADWNK----PVLQILAAIDEWTYWPLFEMADAQFVGPDRTIFLGDASHAVTPFAA 309 (400)
T ss_pred EEEcCCCCcccCCCCCCHHHHHHHhcCCCh----HHHHHHhcCCceeECcCcccCCCcceecCCEEEEecccccCCchhh
Confidence 111 1111111233334333322211 1111111 112234443222 22 45899999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHhcCCCCCCCchhhHHHHh
Q 010693 370 YMVARTMALAPALADAIAECLGSTRMIRGRPLHQKVWN 407 (503)
Q Consensus 370 ~G~~~al~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~ 407 (503)
||+|+||+||..||++|.. .+....++.|++..+
T Consensus 310 qG~n~aieDa~~La~~L~~----~~~~~aL~~Ye~~R~ 343 (400)
T PRK06475 310 QGAAMAIEDAAALAEALDS----DDQSAGLKRFDSVRK 343 (400)
T ss_pred hhHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHH
Confidence 9999999999999999952 122356788877654
No 47
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.95 E-value=8.7e-26 Score=241.47 Aligned_cols=308 Identities=17% Similarity=0.182 Sum_probs=188.9
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCC-CCCcccch---hHhhhhcCchhhh-hh--ccCceEEEe
Q 010693 82 DRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLST-WPNNYGVW---VDEFEDIGLVDCL-DK--TWPMTCVFI 154 (503)
Q Consensus 82 ~~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~-~~~~~g~~---~~~l~~~~~~~~~-~~--~~~~~~~~~ 154 (503)
....+||+||||||+||++|+.|++ .|++|+|||+.+... .++..+.+ ++.|+.+|+.+.+ .. .|....++.
T Consensus 20 ~~~~~dVlIVGaGpaGl~lA~~L~~-~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~ 98 (547)
T PRK08132 20 DPARHPVVVVGAGPVGLALAIDLAQ-QGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFL 98 (547)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHh-CCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEe
Confidence 3467999999999999999999999 999999999987542 23344443 3457788884433 22 232222332
Q ss_pred cCCcccc--------cCC-CccccCHHHHHHHHHHHHHh-CCcEEE-EeEEEEEEEeCCEEEEEeC--CCc-EEEeceEE
Q 010693 155 NDHKTKY--------LDR-PYGRVSRNILKTKLLENCVS-NGVKFH-KAKVWHVNHQEFESSIVCD--DGN-EIKASLIV 220 (503)
Q Consensus 155 ~~~~~~~--------~~~-~~~~v~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~~~~~~v~~~--~g~-~i~a~~vI 220 (503)
.+..... ... .+..+.+..+++.|.+.+.+ .|++++ +++|++++.+++.+.+.+. +|. +++||+||
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vV 178 (547)
T PRK08132 99 RDEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVI 178 (547)
T ss_pred CCCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEE
Confidence 2211100 001 12237888999999999887 479998 9999999988887776653 454 69999999
Q ss_pred ecCCCCcccccccCCCCCcccee-EEEEEEec-CCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCCeEE
Q 010693 221 DASGFASSFVEYDKPRNHGYQIA-HGILAEVE-SHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNLVF 298 (503)
Q Consensus 221 ~A~G~~s~vr~~~~~~~~~~~~~-~g~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~~ 298 (503)
+|||.+|.+|+..+....+..+. ..+...+. ..++......+++ .. +. .+ .++++.|..++...
T Consensus 179 gADG~~S~vR~~lg~~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~--~~-------~~-~~----~~~~~~~~~~~~~~ 244 (547)
T PRK08132 179 ACDGARSPLREMLGLEFEGRTFEDRFLIADVKMKADFPTERWFWFD--PP-------FH-PG----QSVLLHRQPDNVWR 244 (547)
T ss_pred ECCCCCcHHHHHcCCCCCCccccceEEEEEEEecCCCCCeeeEEEe--cc-------CC-CC----cEEEEEeCCCCeEE
Confidence 99999999998766543332221 11111111 1122222221111 00 00 11 24555565554332
Q ss_pred Eecccc---cCCCCCCHHHHHHHHHHHHhhcCCccceEeecceecccCCCCC--CCCCCCEEEeccCCCCcCCcccHHHH
Q 010693 299 LEETSL---VSRPVLSYKEVKRRMAARLRHMGIRVKRVIEDEKCLIPMGGPL--PVIPQSVMAIGSTSGLVHPSTGYMVA 373 (503)
Q Consensus 299 v~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~p~~~~~--~~~~~~v~liGDAa~~~~P~~G~G~~ 373 (503)
+..... ........+++.+.+.+.+... ... .+.. ...+++.... ....+||+|+|||||.+.|+.|||+|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~-~~~~--~~~~~~~~~~a~~~~~gRV~L~GDAAH~~~P~~GqG~n 320 (547)
T PRK08132 245 IDFQLGWDADPEAEKKPENVIPRVRALLGED-VPF-ELEW--VSVYTFQCRRMDRFRHGRVLFAGDAAHQVSPFGARGAN 320 (547)
T ss_pred EEEecCCCCCchhhcCHHHHHHHHHHHcCCC-CCe-eEEE--EEeeeeeeeeecccccccEEEEecccccCCCccccccc
Confidence 221100 0011233455555555555321 111 1111 1222222111 22579999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHhcCCCCCCCchhhHHHHhh
Q 010693 374 RTMALAPALADAIAECLGSTRMIRGRPLHQKVWNG 408 (503)
Q Consensus 374 ~al~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~ 408 (503)
++|+||..||+.|+..+.+......|+.|++..+.
T Consensus 321 ~gi~DA~~LawkLa~vl~g~~~~~lL~~Ye~eR~p 355 (547)
T PRK08132 321 SGIQDADNLAWKLALVLRGRAPDSLLDSYASEREF 355 (547)
T ss_pred chHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 99999999999999988765556789999887664
No 48
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.95 E-value=2.5e-26 Score=236.46 Aligned_cols=299 Identities=14% Similarity=0.123 Sum_probs=176.2
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCC-Ccccc---hhHhhhhcCchhhhhh-ccC--ceEEEec-C
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWP-NNYGV---WVDEFEDIGLVDCLDK-TWP--MTCVFIN-D 156 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~-~~~g~---~~~~l~~~~~~~~~~~-~~~--~~~~~~~-~ 156 (503)
..||+||||||+|+++|+.|++ .|++|+|+||.+..... ...+. ....|+.+|+.+.+.. ... ...+.-. .
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~-~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 82 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALAR-QGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVD 82 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHh-CCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCC
Confidence 5899999999999999999999 99999999998754321 11122 3345778888544322 211 1111111 1
Q ss_pred Ccc-----------cccCCCccccCHHHHHHHHHHHHHhC-CcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecC
Q 010693 157 HKT-----------KYLDRPYGRVSRNILKTKLLENCVSN-GVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDAS 223 (503)
Q Consensus 157 ~~~-----------~~~~~~~~~v~r~~l~~~L~~~~~~~-gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~ 223 (503)
+.. .....++..++|..+.+.|.+.+.+. +++++ +++|++++.+++.+.+.+.+|+++.||+||+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~Ad 162 (396)
T PRK08163 83 AEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCD 162 (396)
T ss_pred CCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECC
Confidence 100 01122333489999999999999875 48998 899999998888888988899899999999999
Q ss_pred CCCcccccccCCCCCccceeEEEEEEecCCCCCC----CceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCCeEE-
Q 010693 224 GFASSFVEYDKPRNHGYQIAHGILAEVESHPFDL----DKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNLVF- 298 (503)
Q Consensus 224 G~~s~vr~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~~- 298 (503)
|.+|.+|+........+.....+...+....... +.... +. +. ..+++.+|..++..+
T Consensus 163 G~~S~~r~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-------------~~-g~---~~~~~~~p~~~g~~~~ 225 (396)
T PRK08163 163 GVKSVVRQSLVGDAPRVTGHVVYRAVIDVDDMPEDLRINAPVL-------------WA-GP---HCHLVHYPLRGGEQYN 225 (396)
T ss_pred CcChHHHhhccCCCCCccccEEEEEEEeHHHCcchhccCccEE-------------EE-cC---CceEEEEEecCCeEEE
Confidence 9999998754221111111111111111111111 00100 01 11 135677787655321
Q ss_pred -E--ecccccC---CCCCCHHHHHHHHHHHHhhcCCccceEeec--ceecccCC--CCCC-CCCCCEEEeccCCCCcCCc
Q 010693 299 -L--EETSLVS---RPVLSYKEVKRRMAARLRHMGIRVKRVIED--EKCLIPMG--GPLP-VIPQSVMAIGSTSGLVHPS 367 (503)
Q Consensus 299 -v--~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~--~~~~~p~~--~~~~-~~~~~v~liGDAa~~~~P~ 367 (503)
+ ....... ....+.+++.+.+..+.+.. ..++.. ....+++. .+.+ ...+||+++|||||.++|+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~ 301 (396)
T PRK08163 226 LVVTFHSREQEEWGVKDGSKEEVLSYFEGIHPRP----RQMLDKPTSWKRWATADREPVAKWSTGRVTLLGDAAHPMTQY 301 (396)
T ss_pred EEEEECCCCCcccccCCCCHHHHHHHHcCCChHH----HHHHhcCCceeEccccCCCcccccccCcEEEEecccccCCcc
Confidence 1 1111000 11123344444433322221 111110 00111111 1122 2568999999999999999
Q ss_pred ccHHHHHHHHhHHHHHHHHHHHhcCCCCCCCchhhHHHHh
Q 010693 368 TGYMVARTMALAPALADAIAECLGSTRMIRGRPLHQKVWN 407 (503)
Q Consensus 368 ~G~G~~~al~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~ 407 (503)
.|||+|+||+||..||++|... ..+....++.|++..+
T Consensus 302 ~GqG~n~ai~Da~~La~~L~~~--~~~~~~al~~y~~~R~ 339 (396)
T PRK08163 302 MAQGACMALEDAVTLGKALEGC--DGDAEAAFALYESVRI 339 (396)
T ss_pred hhccHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 9999999999999999999752 1122346777877554
No 49
>PRK05868 hypothetical protein; Validated
Probab=99.95 E-value=3.7e-26 Score=232.63 Aligned_cols=301 Identities=15% Similarity=0.124 Sum_probs=176.6
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCC-Ccc---cchhHhhhhcCchhhhhh---ccCceEEEecCCc
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWP-NNY---GVWVDEFEDIGLVDCLDK---TWPMTCVFINDHK 158 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~-~~~---g~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~ 158 (503)
.||+||||||+|+++|+.|++ +|++|+|||+.+..... ... +.....++.+|+.+.+.. ......++..++.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~-~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~ 80 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGR-HGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGN 80 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHh-CCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCC
Confidence 489999999999999999999 99999999998764321 111 223456888888544322 2222233222221
Q ss_pred cc-----------ccCCCccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCC
Q 010693 159 TK-----------YLDRPYGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFA 226 (503)
Q Consensus 159 ~~-----------~~~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~ 226 (503)
.. .+..+...+.|..|.+.|.+.+ ..|++++ +++|++++.+++.+.|.++||++++||+||+|||.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~-~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~ 159 (372)
T PRK05868 81 ELFRDTESTPTGGPVNSPDIELLRDDLVELLYGAT-QPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLH 159 (372)
T ss_pred EEeecccccccCCCCCCceEEEEHHHHHHHHHHhc-cCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCC
Confidence 10 0001111266888888775543 5689999 999999998888899999999999999999999999
Q ss_pred cccccccCCCCCccceeEE---EEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCC-eEE--Ee
Q 010693 227 SSFVEYDKPRNHGYQIAHG---ILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSN-LVF--LE 300 (503)
Q Consensus 227 s~vr~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~-~~~--v~ 300 (503)
|.+|+.............| ....++. ....+....+ +...+ .++.++|..++ ..+ +.
T Consensus 160 S~vR~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~------------~~g~~----~~~~~~~~~~~~~~~~~~~ 222 (372)
T PRK05868 160 SNVRRLVFGPEEQFVKRLGTHAAIFTVPN-FLELDYWQTW------------HYGDS----TMAGVYSARNNTEARAALA 222 (372)
T ss_pred chHHHHhcCCcccceeecceEEEEEEcCC-CCCCCcceEE------------EecCC----cEEEEEecCCCCceEEEEE
Confidence 9999865322211111112 1112221 1111111110 01122 23445555543 211 11
Q ss_pred --cccccCCCCCCHHHHHHHHHHHHhhcCCccceEe---e-cceeccc-CCC-CCC-CCCCCEEEeccCCCCcCCcccHH
Q 010693 301 --ETSLVSRPVLSYKEVKRRMAARLRHMGIRVKRVI---E-DEKCLIP-MGG-PLP-VIPQSVMAIGSTSGLVHPSTGYM 371 (503)
Q Consensus 301 --~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~---~-~~~~~~p-~~~-~~~-~~~~~v~liGDAa~~~~P~~G~G 371 (503)
...... .....+...+.+.+.+...++....+. . .....++ +.. +.+ .+.+||+++|||||.+.|+.|||
T Consensus 223 ~~~~~~~~-~~~~~~~~~~~l~~~f~~~~w~~~~l~~~~~~~~~~~~~~~~~~~~~~w~~grv~LvGDAAH~~~P~~GqG 301 (372)
T PRK05868 223 FMDTELRI-DYRDTEAQFAELQRRMAEDGWVRAQLLHYMRSAPDFYFDEMSQILMDRWSRGRVALVGDAGYCCSPLSGQG 301 (372)
T ss_pred EecCCccc-ccCChHHHHHHHHHHHhhCCCchHHHHhhcccCCceeeccceEEecCCCCCCCeeeeecccccCCCccCcc
Confidence 111000 111223344555555543333321111 1 1111112 111 112 26789999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHhcCCCCCCCchhhHHHHhh
Q 010693 372 VARTMALAPALADAIAECLGSTRMIRGRPLHQKVWNG 408 (503)
Q Consensus 372 ~~~al~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~ 408 (503)
+++||+||..||+.|... ..+....++.|++.++.
T Consensus 302 a~~AleDa~~La~~L~~~--~~~~~~al~~ye~~~~~ 336 (372)
T PRK05868 302 TSVALLGAYILAGELKAA--GDDYQLGFANYHAEFHG 336 (372)
T ss_pred HHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHhH
Confidence 999999999999999753 11224578888876653
No 50
>PTZ00367 squalene epoxidase; Provisional
Probab=99.95 E-value=2.9e-25 Score=234.60 Aligned_cols=287 Identities=19% Similarity=0.190 Sum_probs=166.3
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccc-----hhHhhhhcCchhhhhh---ccCceEEE
Q 010693 82 DRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGV-----WVDEFEDIGLVDCLDK---TWPMTCVF 153 (503)
Q Consensus 82 ~~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~-----~~~~l~~~~~~~~~~~---~~~~~~~~ 153 (503)
.+..+||+||||||+|+++|+.|++ +|++|+|+||.+.....+..|. ....|+++|+.+.+.. ...+..++
T Consensus 30 ~~~~~dViIVGaGiaGlalA~aLar-~G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~L~~LGL~d~l~~i~~~~~~~~v~ 108 (567)
T PTZ00367 30 TNYDYDVIIVGGSIAGPVLAKALSK-QGRKVLMLERDLFSKPDRIVGELLQPGGVNALKELGMEECAEGIGMPCFGYVVF 108 (567)
T ss_pred cccCccEEEECCCHHHHHHHHHHHh-cCCEEEEEccccccccchhhhhhcCHHHHHHHHHCCChhhHhhcCcceeeeEEE
Confidence 3457999999999999999999999 9999999999762122233332 3346888998665543 12222232
Q ss_pred ecCCcccccC---CCccc-cCHHHHHHHHHHHH---HhCCcEEEEeEEEEEEEeCC-------EEEEEeCC---------
Q 010693 154 INDHKTKYLD---RPYGR-VSRNILKTKLLENC---VSNGVKFHKAKVWHVNHQEF-------ESSIVCDD--------- 210 (503)
Q Consensus 154 ~~~~~~~~~~---~~~~~-v~r~~l~~~L~~~~---~~~gv~~~~~~v~~i~~~~~-------~~~v~~~~--------- 210 (503)
..++....+. ...+. +.+..+.+.|++.+ ...|++++.++|+++..+++ ++++...+
T Consensus 109 ~~~G~~~~i~~~~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~~~v~~l~~~~~~~~~~v~gV~~~~~~~~~~~~~~f 188 (567)
T PTZ00367 109 DHKGKQVKLPYGAGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLEGTVNSLLEEGPGFSERAYGVEYTEAEKYDVPENPF 188 (567)
T ss_pred ECCCCEEEecCCCCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEEeEEEEeccccCccCCeeEEEEEecCCccccccccc
Confidence 2222111111 11122 56788888888877 34789998678888865443 34444443
Q ss_pred --------------CcEEEeceEEecCCCCcccccccCCCC---CccceeEEEEEEecCCCCCCCceEEeeccCCCCCCC
Q 010693 211 --------------GNEIKASLIVDASGFASSFVEYDKPRN---HGYQIAHGILAEVESHPFDLDKMVLMDWRDSHLGNE 273 (503)
Q Consensus 211 --------------g~~i~a~~vI~A~G~~s~vr~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 273 (503)
|++++||+||+|||.+|++|+...... ...+.+.|....-...+......++
T Consensus 189 ~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~~g~~~~~~~lp~~~~~~v~----------- 257 (567)
T PTZ00367 189 REDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPASENHSHFVGLVLKNVRLPKEQHGTVF----------- 257 (567)
T ss_pred ccccccccccccccceEEEeCEEEECCCcchHHHHHccCCCCCcCcceEEEEEEEecccCCCCCeeEEE-----------
Confidence 568999999999999999998765422 2334555653321111111100111
Q ss_pred cccccCCCCCCeEEEEeecCCCeEE--EecccccCCCCCCHHHHHHHHHHHH-hhcCCc----cceEeec--ceecccCC
Q 010693 274 PYLRASNLKLPTFLYAMPFDSNLVF--LEETSLVSRPVLSYKEVKRRMAARL-RHMGIR----VKRVIED--EKCLIPMG 344 (503)
Q Consensus 274 ~~~~~~g~~~~~~~~~~P~~~~~~~--v~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~----~~~i~~~--~~~~~p~~ 344 (503)
+.++ +.++++|.+++... +..... ..+ +.++..+.+.+.. +..... ....... .....|..
T Consensus 258 --~g~~-----gpi~~yPl~~~~~r~lv~~~~~-~~p--~~~~~~~~l~~~~~p~l~~~l~~~f~~~l~~~~~l~~~p~~ 327 (567)
T PTZ00367 258 --LGKT-----GPILSYRLDDNELRVLVDYNKP-TLP--SLEEQSEWLIEDVAPHLPENMRESFIRASKDTKRIRSMPNA 327 (567)
T ss_pred --EcCC-----ceEEEEEcCCCeEEEEEEecCC-cCC--ChHHHHHHHHHhhcccCcHHHHHHHHHhhcccCCeEEeeHh
Confidence 1112 45889999877543 221110 001 1111222221111 000000 0000000 01111222
Q ss_pred C--CCCCCCCCEEEeccCCCCcCCcccHHHHHHHHhHHHHHHHHHHHh
Q 010693 345 G--PLPVIPQSVMAIGSTSGLVHPSTGYMVARTMALAPALADAIAECL 390 (503)
Q Consensus 345 ~--~~~~~~~~v~liGDAa~~~~P~~G~G~~~al~~a~~lA~~l~~~l 390 (503)
. ..+...+|++++|||||+++|++|||++.|++||..|++.|....
T Consensus 328 ~~p~~~~~~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~~ 375 (567)
T PTZ00367 328 RYPPAFPSIKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGIK 375 (567)
T ss_pred hCCCccCCCCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhhh
Confidence 1 112357899999999999999999999999999999999997643
No 51
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.95 E-value=9.4e-26 Score=231.17 Aligned_cols=301 Identities=14% Similarity=0.144 Sum_probs=168.9
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCC---cccc---hhHhhhhcCchhhhhh-ccC--ceEEEec
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPN---NYGV---WVDEFEDIGLVDCLDK-TWP--MTCVFIN 155 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~---~~g~---~~~~l~~~~~~~~~~~-~~~--~~~~~~~ 155 (503)
.+||+||||||+|+++|+.|++ +|++|+|||+.+...... .... ....|+.+|+.+.+.. ... ...+...
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~-~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 80 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHK-AGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFD 80 (390)
T ss_pred CceEEEECccHHHHHHHHHHHH-CCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeC
Confidence 4899999999999999999999 999999999987532111 1111 3356788898544332 222 2222211
Q ss_pred CCcc-cccC-----CCccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEE-eCCEEEEEeC-CCc--EEEeceEEecCC
Q 010693 156 DHKT-KYLD-----RPYGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNH-QEFESSIVCD-DGN--EIKASLIVDASG 224 (503)
Q Consensus 156 ~~~~-~~~~-----~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~-~~~~~~v~~~-~g~--~i~a~~vI~A~G 224 (503)
.... ..+. .+.....+..+.+.|.+.+.+.|++++ +.+++.+.. +++.+.|++. +|+ +++||+||+|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG 160 (390)
T TIGR02360 81 GQRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDG 160 (390)
T ss_pred CEEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCC
Confidence 1100 0011 111113467788889888888888887 877777754 4456666664 675 699999999999
Q ss_pred CCcccccccCCCCC-cccee--EEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecC--CC-eEE
Q 010693 225 FASSFVEYDKPRNH-GYQIA--HGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFD--SN-LVF 298 (503)
Q Consensus 225 ~~s~vr~~~~~~~~-~~~~~--~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~--~~-~~~ 298 (503)
.+|.+|+....... .+..+ .++..-+...+.......+. . .++ ++. ++|.. +. ..+
T Consensus 161 ~~S~VR~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~-----------~~~----~~~-~~~~~~~~~~~~~ 222 (390)
T TIGR02360 161 FHGVSRASIPAEVLKEFERVYPFGWLGILSETPPVSHELIYS--N-----------HER----GFA-LCSMRSATRSRYY 222 (390)
T ss_pred CchhhHHhcCcccceeeeccCCcceEEEecCCCCCCCceEEE--e-----------CCC----ceE-EEeccCCCcceEE
Confidence 99999997543221 11111 12211111111111111110 0 011 122 22322 11 111
Q ss_pred EecccccCCCCCCHHHHHHHHHHHHhhcCCccceE-eec---ceecccCCCC--CCCCCCCEEEeccCCCCcCCcccHHH
Q 010693 299 LEETSLVSRPVLSYKEVKRRMAARLRHMGIRVKRV-IED---EKCLIPMGGP--LPVIPQSVMAIGSTSGLVHPSTGYMV 372 (503)
Q Consensus 299 v~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~i-~~~---~~~~~p~~~~--~~~~~~~v~liGDAa~~~~P~~G~G~ 372 (503)
+.............+.+.+.+.+.+... ..++ ... .....|+... .+...+||+++|||||.++|+.|||+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~grvvLvGDAAH~~~P~~GQG~ 299 (390)
T TIGR02360 223 VQVPLTDKVEDWSDDRFWAELKRRLPSE---AAERLVTGPSIEKSIAPLRSFVCEPMQYGRLFLAGDAAHIVPPTGAKGL 299 (390)
T ss_pred EEcCCCCChhhCChhHHHHHHHHhcCch---hhhhhccCCccceeeeeHHhhccccCccCCEEEEEccccCCCCCcCCch
Confidence 1111000112223344444444443211 1111 111 1123343221 23357999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHhcCCCCCCCchhhHHHHhh
Q 010693 373 ARTMALAPALADAIAECLGSTRMIRGRPLHQKVWNG 408 (503)
Q Consensus 373 ~~al~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~ 408 (503)
|+||+||..||++|.+...++ ....++.|++.++.
T Consensus 300 n~aieDA~~La~~L~~~~~~~-~~~al~~Y~~~R~~ 334 (390)
T TIGR02360 300 NLAASDVHYLYEALLEHYQEG-SSAGIEGYSARALA 334 (390)
T ss_pred hHHHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 999999999999998764322 23567888876553
No 52
>PLN02985 squalene monooxygenase
Probab=99.95 E-value=1.4e-25 Score=235.98 Aligned_cols=308 Identities=16% Similarity=0.167 Sum_probs=173.7
Q ss_pred CCCCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccch-----hHhhhhcCchhhhhh----ccCceE
Q 010693 81 SDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVW-----VDEFEDIGLVDCLDK----TWPMTC 151 (503)
Q Consensus 81 ~~~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~-----~~~l~~~~~~~~~~~----~~~~~~ 151 (503)
.++..+||+|||||++|+++|+.|++ +|++|+|+||.+... .+.+|.+ ...++++|+.+.+.. .+.+..
T Consensus 39 ~~~~~~DViIVGAG~aGlalA~aLa~-~G~~V~vlEr~~~~~-~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~ 116 (514)
T PLN02985 39 RKDGATDVIIVGAGVGGSALAYALAK-DGRRVHVIERDLREP-ERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMA 116 (514)
T ss_pred CcCCCceEEEECCCHHHHHHHHHHHH-cCCeEEEEECcCCCC-ccccccccCchHHHHHHHcCCcchhhhccCcccccEE
Confidence 35567999999999999999999999 999999999975422 2233432 345788888655432 233333
Q ss_pred EEecCCcc-cccC--------CCccc-cCHHHHHHHHHHHHHhC-CcEEEEeEEEEEEEeCCE---EEEEeCCCc--EEE
Q 010693 152 VFINDHKT-KYLD--------RPYGR-VSRNILKTKLLENCVSN-GVKFHKAKVWHVNHQEFE---SSIVCDDGN--EIK 215 (503)
Q Consensus 152 ~~~~~~~~-~~~~--------~~~~~-v~r~~l~~~L~~~~~~~-gv~~~~~~v~~i~~~~~~---~~v~~~~g~--~i~ 215 (503)
++.++... .... .+.++ ++|..+.+.|++++.+. |++++..+++++..+++. +++...+|+ ++.
T Consensus 117 v~~~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~gtvv~li~~~~~v~gV~~~~~dG~~~~~~ 196 (514)
T PLN02985 117 VYKDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEGTVKSLIEEKGVIKGVTYKNSAGEETTAL 196 (514)
T ss_pred EEECCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEeeeEEEEEEcCCEEEEEEEEcCCCCEEEEE
Confidence 32222110 1111 12223 78999999999999774 789886678887766553 333334665 467
Q ss_pred eceEEecCCCCcccccccCCCCC-ccceeEEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCC
Q 010693 216 ASLIVDASGFASSFVEYDKPRNH-GYQIAHGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDS 294 (503)
Q Consensus 216 a~~vI~A~G~~s~vr~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~ 294 (503)
||+||+|||.+|++|+....... .+.+..++...... ...++.... +. +. ++.+.++|.++
T Consensus 197 AdLVVgADG~~S~vR~~l~~~~~~~~s~~~~~~~~~~~-~~~~~~~~~-------------~~-~~---~~~~l~ypi~~ 258 (514)
T PLN02985 197 APLTVVCDGCYSNLRRSLNDNNAEVLSYQVGYISKNCR-LEEPEKLHL-------------IM-SK---PSFTMLYQISS 258 (514)
T ss_pred CCEEEECCCCchHHHHHhccCCCcceeEeEEEEEcccc-CCCCCcceE-------------Ec-CC---CceEEEEEeCC
Confidence 99999999999999987654332 23333444321111 111111110 01 11 23456667666
Q ss_pred CeEEEeccccc-CCCCCCHHHHHHHHHHHH-hhcCCccce-----Eeec-ceecccCCCC--CCCCCCCEEEeccCCCCc
Q 010693 295 NLVFLEETSLV-SRPVLSYKEVKRRMAARL-RHMGIRVKR-----VIED-EKCLIPMGGP--LPVIPQSVMAIGSTSGLV 364 (503)
Q Consensus 295 ~~~~v~~~~~~-~~~~~~~~~~~~~l~~~l-~~~~~~~~~-----i~~~-~~~~~p~~~~--~~~~~~~v~liGDAa~~~ 364 (503)
+...+...... ..+.....++.+.+.+.. +.......+ .... .....|.... .....+|++++|||+|++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~~~~~~~p~~~l~~~~~~~~~vvLiGDAaH~~ 338 (514)
T PLN02985 259 TDVRCVFEVLPDNIPSIANGEMSTFVKNTIAPQVPPKLRKIFLKGIDEGAHIKVVPTKRMSATLSDKKGVIVLGDAFNMR 338 (514)
T ss_pred CeEEEEEEEeCCCCCCcChhhHHHHHHhccccccCHHHHHHHHhhcccccceeecCcccccccccCCCCEEEEecccccC
Confidence 65432211110 111122223222222211 100000000 0000 0111221111 112457999999999999
Q ss_pred CCcccHHHHHHHHhHHHHHHHHHHHhcCC---CCCCCchhhHHHHhh
Q 010693 365 HPSTGYMVARTMALAPALADAIAECLGST---RMIRGRPLHQKVWNG 408 (503)
Q Consensus 365 ~P~~G~G~~~al~~a~~lA~~l~~~l~~~---~~~~~l~~y~~~~~~ 408 (503)
+|++|||++.|++||..|++.|...-+-. +....++.|+...+.
T Consensus 339 ~P~~GQGmn~AleDA~vLa~lL~~~~~~~~~~~~~~aL~~y~~~Rk~ 385 (514)
T PLN02985 339 HPAIASGMMVLLSDILILRRLLQPLSNLGNANKVSEVIKSFYDIRKP 385 (514)
T ss_pred CCCccccHhHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhhc
Confidence 99999999999999999999997632111 112457777765553
No 53
>PRK06126 hypothetical protein; Provisional
Probab=99.95 E-value=2.4e-25 Score=238.22 Aligned_cols=306 Identities=16% Similarity=0.144 Sum_probs=182.3
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCC-CCCcccc---hhHhhhhcCchhhhhh-ccC---------
Q 010693 83 RIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLST-WPNNYGV---WVDEFEDIGLVDCLDK-TWP--------- 148 (503)
Q Consensus 83 ~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~-~~~~~g~---~~~~l~~~~~~~~~~~-~~~--------- 148 (503)
...+||+||||||+||++|+.|++ +|++|+||||.+... .++..+. .++.|+.+|+.+.+.. ...
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~-~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~ 83 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGR-RGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAY 83 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHH-CCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceE
Confidence 346999999999999999999999 999999999886432 2333332 3345777887443322 110
Q ss_pred -----ceE---EEecCCccc-cc--------CCC--ccccCHHHHHHHHHHHHHh-CCcEEE-EeEEEEEEEeCCEEEEE
Q 010693 149 -----MTC---VFINDHKTK-YL--------DRP--YGRVSRNILKTKLLENCVS-NGVKFH-KAKVWHVNHQEFESSIV 207 (503)
Q Consensus 149 -----~~~---~~~~~~~~~-~~--------~~~--~~~v~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~~~~~~v~ 207 (503)
+.. +.+...... .. ..+ ...+++..+.+.|.+.+.+ .|++++ +++|++++.+++++.++
T Consensus 84 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~ 163 (545)
T PRK06126 84 FTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTAT 163 (545)
T ss_pred EecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEE
Confidence 000 000000000 00 011 1237889999999999876 589999 99999999888877776
Q ss_pred eC---CCc--EEEeceEEecCCCCcccccccCCCCCc---cceeEEEEEEecCC--CCCCCceEEeeccCCCCCCCcccc
Q 010693 208 CD---DGN--EIKASLIVDASGFASSFVEYDKPRNHG---YQIAHGILAEVESH--PFDLDKMVLMDWRDSHLGNEPYLR 277 (503)
Q Consensus 208 ~~---~g~--~i~a~~vI~A~G~~s~vr~~~~~~~~~---~~~~~g~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~ 277 (503)
+. +|+ +++||+||+|||.+|.+|+..+....+ .+....+....+.. ......... .+.
T Consensus 164 ~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~------------~~~ 231 (545)
T PRK06126 164 VEDLDGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSIYIRAPGLAALVGHDPAWM------------YWL 231 (545)
T ss_pred EEECCCCcEEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEEEEEEEcCchHHHhcCCCceE------------EEE
Confidence 53 354 699999999999999999976553322 22222332222110 000000000 010
Q ss_pred cCCCCCCeEEEEeecCCCeEE-Ee-cccccCCCCCCHHHHHHHHHHHHhhcCCccceEeecceecccCCCCC-C-CCCCC
Q 010693 278 ASNLKLPTFLYAMPFDSNLVF-LE-ETSLVSRPVLSYKEVKRRMAARLRHMGIRVKRVIEDEKCLIPMGGPL-P-VIPQS 353 (503)
Q Consensus 278 ~~g~~~~~~~~~~P~~~~~~~-v~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~p~~~~~-~-~~~~~ 353 (503)
.+. ..+..++|...+..| +. ..........+.+++.+.+.+.+.. ... ..+.... .++..... + ...+|
T Consensus 232 ~~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~i~~~~--~w~~~~~~a~~~~~gR 304 (545)
T PRK06126 232 FNP---DRRGVLVAIDGRDEWLFHQLRGGEDEFTIDDVDARAFVRRGVGE-DID-YEVLSVV--PWTGRRLVADSYRRGR 304 (545)
T ss_pred ECC---CccEEEEEECCCCeEEEEEecCCCCCCCCCHHHHHHHHHHhcCC-CCC-eEEEeec--ccchhheehhhhccCC
Confidence 011 012233344333333 22 1101111233455666666655531 111 1122211 12211111 1 25799
Q ss_pred EEEeccCCCCcCCcccHHHHHHHHhHHHHHHHHHHHhcCCCCCCCchhhHHHHhh
Q 010693 354 VMAIGSTSGLVHPSTGYMVARTMALAPALADAIAECLGSTRMIRGRPLHQKVWNG 408 (503)
Q Consensus 354 v~liGDAa~~~~P~~G~G~~~al~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~ 408 (503)
|+++|||||.+.|+.|||+|++++||..||+.|+..+++......|+.|++..+.
T Consensus 305 v~L~GDAAH~~~P~~GqG~N~gieDa~~La~~La~~~~~~~~~~lL~~Y~~eR~p 359 (545)
T PRK06126 305 VFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNGWAGPALLDSYEAERRP 359 (545)
T ss_pred EEEechhhccCCCCcCcccchhHHHHHHHHHHHHHHHcCCCcHHHHhhhHHHhhH
Confidence 9999999999999999999999999999999999887654445689999887664
No 54
>PRK07236 hypothetical protein; Provisional
Probab=99.95 E-value=2.2e-25 Score=228.50 Aligned_cols=149 Identities=18% Similarity=0.156 Sum_probs=104.2
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccc-----hhHhhhhcCchhhhhhccC--ceEEEe
Q 010693 82 DRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGV-----WVDEFEDIGLVDCLDKTWP--MTCVFI 154 (503)
Q Consensus 82 ~~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~-----~~~~l~~~~~~~~~~~~~~--~~~~~~ 154 (503)
.+...||+||||||+||++|+.|++ .|++|+|+||.+........|. ....|+.+|+.+....... ...+..
T Consensus 3 ~~~~~~ViIVGaG~aGl~~A~~L~~-~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~ 81 (386)
T PRK07236 3 HMSGPRAVVIGGSLGGLFAALLLRR-AGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLD 81 (386)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHh-CCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEe
Confidence 4567999999999999999999999 9999999999864322222222 2345777777443222211 112221
Q ss_pred cCCcc-cccCCCccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCcccccc
Q 010693 155 NDHKT-KYLDRPYGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSFVEY 232 (503)
Q Consensus 155 ~~~~~-~~~~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~vr~~ 232 (503)
.++.. .....+...+.+..+.+.|.+.+ .+++++ +++|++++.+++.+.|.+.+|++++||+||+|||.+|.+|+.
T Consensus 82 ~~g~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~vR~~ 159 (386)
T PRK07236 82 RDGRVVQRRPMPQTQTSWNVLYRALRAAF--PAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRSTVRAQ 159 (386)
T ss_pred CCCCEeeccCCCccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCchHHHH
Confidence 11111 01111222256777777777644 456788 999999999888999999999999999999999999999986
Q ss_pred c
Q 010693 233 D 233 (503)
Q Consensus 233 ~ 233 (503)
.
T Consensus 160 l 160 (386)
T PRK07236 160 L 160 (386)
T ss_pred h
Confidence 5
No 55
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.95 E-value=7.5e-25 Score=232.60 Aligned_cols=308 Identities=12% Similarity=0.106 Sum_probs=168.8
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCC-----Ccccc---hhHhhhhcCc---hhhhhhccC-c
Q 010693 82 DRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWP-----NNYGV---WVDEFEDIGL---VDCLDKTWP-M 149 (503)
Q Consensus 82 ~~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~-----~~~g~---~~~~l~~~~~---~~~~~~~~~-~ 149 (503)
+....+|+||||||+||++|+.|++ +|++|+||||.+..... ...+. ....|+.+|+ ++....... .
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r-~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~ 156 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKK-KGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITG 156 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHh-cCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCccc
Confidence 4567999999999999999999999 99999999997632111 11222 3345677764 222221111 0
Q ss_pred eEE-------------EecCCcc-cccCCCccc-cCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcE
Q 010693 150 TCV-------------FINDHKT-KYLDRPYGR-VSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNE 213 (503)
Q Consensus 150 ~~~-------------~~~~~~~-~~~~~~~~~-v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~ 213 (503)
..+ .++.... .....++.+ +.|..|.+.|.+.+.. . .++ +++|++++.+++.++|.+.+|++
T Consensus 157 ~~i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~-~-~i~~g~~V~~I~~~~d~VtV~~~dG~t 234 (668)
T PLN02927 157 DRINGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGE-D-VIRNESNVVDFEDSGDKVTVVLENGQR 234 (668)
T ss_pred ceeeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCC-C-EEEcCCEEEEEEEeCCEEEEEECCCCE
Confidence 011 1110000 001123333 8999999999765422 1 345 78999999988999999999989
Q ss_pred EEeceEEecCCCCcccccccCCC-CCccceeEEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeec
Q 010693 214 IKASLIVDASGFASSFVEYDKPR-NHGYQIAHGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPF 292 (503)
Q Consensus 214 i~a~~vI~A~G~~s~vr~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~ 292 (503)
+++|+||+|||.+|.+|+..-.. ...+.....+...++..+.+........+ .+. ..++...|.
T Consensus 235 i~aDlVVGADG~~S~vR~~l~g~~~~~~sG~~~~rgi~~~~p~~~~~~~~~~~------------~G~---~~~~v~~~v 299 (668)
T PLN02927 235 YEGDLLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIADFIPADIESVGYRVF------------LGH---KQYFVSSDV 299 (668)
T ss_pred EEcCEEEECCCCCcHHHHHhcCCCCCcccceEEEEEEcCCCcccccccceEEE------------EcC---CeEEEEEcC
Confidence 99999999999999999854221 11111112221111111111011100000 011 123333344
Q ss_pred CCCeE-EEecccccCCCCCCHHHHHHHHHHHHhhcCCccceEeec----ceecccCCC--CC-CCCCCCEEEeccCCCCc
Q 010693 293 DSNLV-FLEETSLVSRPVLSYKEVKRRMAARLRHMGIRVKRVIED----EKCLIPMGG--PL-PVIPQSVMAIGSTSGLV 364 (503)
Q Consensus 293 ~~~~~-~v~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~----~~~~~p~~~--~~-~~~~~~v~liGDAa~~~ 364 (503)
+++.. |..............+...+.+.+.+......+.+++.. ....+++.. +. ....+||+++|||||.+
T Consensus 300 ~~g~~~~~~f~~~p~~~~~~~~~~~e~L~~~f~~w~~~v~elI~~t~~~~i~~~~iyd~~p~~~W~~grVvLiGDAAH~~ 379 (668)
T PLN02927 300 GGGKMQWYAFHEEPAGGADAPNGMKKRLFEIFDGWCDNVLDLLHATEEDAILRRDIYDRSPGFTWGKGRVTLLGDSIHAM 379 (668)
T ss_pred CCCeEEEEEEEECCccccccchhHHHHHHHHhccCCHHHHHHHHhCccccceeeeEEeccCCCccccCcEEEEcCccCCC
Confidence 44322 211100000000112233444444443321111111110 001111111 11 12568999999999999
Q ss_pred CCcccHHHHHHHHhHHHHHHHHHHHhcCC-------CCCCCchhhHHHHh
Q 010693 365 HPSTGYMVARTMALAPALADAIAECLGST-------RMIRGRPLHQKVWN 407 (503)
Q Consensus 365 ~P~~G~G~~~al~~a~~lA~~l~~~l~~~-------~~~~~l~~y~~~~~ 407 (503)
+|..|||.++||+||..||+.|.+++... +....++.|++..+
T Consensus 380 ~P~~GqG~n~AieDa~~La~~L~~~~~~~~~~~~~~~~~~aL~~Ye~~R~ 429 (668)
T PLN02927 380 QPNMGQGGCMAIEDSFQLALELDEAWKQSVETNTPVDVVSSLKRYEESRR 429 (668)
T ss_pred CCccccchHHHHHHHHHHHHHHHHhhccccccCCcccHHHHHHHHHHHHH
Confidence 99999999999999999999998875321 11245667776544
No 56
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.93 E-value=1.8e-24 Score=223.78 Aligned_cols=311 Identities=18% Similarity=0.196 Sum_probs=170.3
Q ss_pred cEEEECCCHHHHHHHHHHHccCC-CcEEEEcCCCCCCC-CCccc---chhHhhhhcCchhhhhh-------ccCceEEEe
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHS-VKVCCVDPSPLSTW-PNNYG---VWVDEFEDIGLVDCLDK-------TWPMTCVFI 154 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G-~~V~viE~~~~~~~-~~~~g---~~~~~l~~~~~~~~~~~-------~~~~~~~~~ 154 (503)
+|+||||||+||++|+.|++ +| ++|+||||.+.... ....+ .....++.+|+.+.+.. .+....+..
T Consensus 2 ~V~IiGgGiaGla~A~~L~~-~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~ 80 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCK-HSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEW 80 (414)
T ss_pred eEEEECCCHHHHHHHHHHHh-cCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEE
Confidence 69999999999999999999 88 69999999865431 11111 13345778887443322 111111221
Q ss_pred cCCc-cccc----CCCcc--ccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCC
Q 010693 155 NDHK-TKYL----DRPYG--RVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFA 226 (503)
Q Consensus 155 ~~~~-~~~~----~~~~~--~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~ 226 (503)
.+.. ...+ ...++ .++|..|.+.|.+.+.. +.++ +++|++++.+++++.|.+.+|.+++||+||+|||.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~--~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~ 158 (414)
T TIGR03219 81 RNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPE--GIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIK 158 (414)
T ss_pred EecCccceeeeeccccCCcccCCHHHHHHHHHHhCCC--ceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCcc
Confidence 1111 1111 11222 37899999999887643 4566 999999998888899999999999999999999999
Q ss_pred cccccccCC---------CCCccceeEEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCCeE
Q 010693 227 SSFVEYDKP---------RNHGYQIAHGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNLV 297 (503)
Q Consensus 227 s~vr~~~~~---------~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~ 297 (503)
|.+|+.... ...++..+.|+... . ..... .....+..........+...+ ++++.+|..++..
T Consensus 159 S~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~-~--~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~p~~~g~~ 230 (414)
T TIGR03219 159 SALRDYVLQGQGQAPVRPRFSGTCAYRGLVDS-L--QLREA-YRAAGLDEHLVDVPQMYLGLD----GHILTFPVRQGRL 230 (414)
T ss_pred HHHHHHhcCccCCCCCCccccCcEEEEEEeeH-H--HHhhh-hccccccccccccceEEEcCC----CeEEEEECCCCcE
Confidence 999985321 11122222333211 1 00000 000000000000000011121 3455667776543
Q ss_pred E--Eecccc--------cCCCCCCHHHHHHHHHHHHhhcCCccceEeecc--eecccCC--CCCC-CCCCCEEEeccCCC
Q 010693 298 F--LEETSL--------VSRPVLSYKEVKRRMAARLRHMGIRVKRVIEDE--KCLIPMG--GPLP-VIPQSVMAIGSTSG 362 (503)
Q Consensus 298 ~--v~~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~--~~~~p~~--~~~~-~~~~~v~liGDAa~ 362 (503)
+ +..... ........+...+.+.+.+......+..+++.. ...+++. ...+ .+.+||+++|||||
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~w~~grv~LiGDAAH 310 (414)
T TIGR03219 231 INVVAFISDRSQPKPTWPSDTPWVREATQREMLDAFAGWGDAARALLECIPAPTLWALHDLAELPGYVHGRVALIGDAAH 310 (414)
T ss_pred EEEEEEEcCcccccCCCCCCCcccCccCHHHHHHHhcCCCHHHHHHHHhCCCCCceeeeecccccceeeCcEEEEEcccC
Confidence 1 111000 000001011112223333322211111111100 0111111 1122 25789999999999
Q ss_pred CcCCcccHHHHHHHHhHHHHHHHHHHHhcCCC-CCCCchhhHHHHhh
Q 010693 363 LVHPSTGYMVARTMALAPALADAIAECLGSTR-MIRGRPLHQKVWNG 408 (503)
Q Consensus 363 ~~~P~~G~G~~~al~~a~~lA~~l~~~l~~~~-~~~~l~~y~~~~~~ 408 (503)
.+.|+.|||.++||+||..||+.|.....+.. ....++.|++..+.
T Consensus 311 ~m~P~~GqGa~~AieDA~~La~~L~~~~~~~~~~~~al~~Ye~~R~~ 357 (414)
T TIGR03219 311 AMLPHQGAGAGQGLEDAYFLARLLGDTELEAGDLPALLEAYDDVRRP 357 (414)
T ss_pred CCCCCcCcchHhHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHhH
Confidence 99999999999999999999999986542222 23567788776553
No 57
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=99.93 E-value=2.3e-24 Score=210.00 Aligned_cols=289 Identities=17% Similarity=0.215 Sum_probs=160.2
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCC-CCcccch---hHhhhhcCchhhhhh-ccC--ceEEEecCC
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTW-PNNYGVW---VDEFEDIGLVDCLDK-TWP--MTCVFINDH 157 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~-~~~~g~~---~~~l~~~~~~~~~~~-~~~--~~~~~~~~~ 157 (503)
+-+|+|||||++||++|++|++ +|++|+|+|+...... +...+.+ ...++++++.+.+.. ..+ +........
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r-~G~~v~VlE~~e~~R~~g~si~L~~ng~~aLkai~~~e~i~~~gip~~~~v~~~~~s 80 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHR-KGIDVVVLESREDPRGEGTSINLALNGWRALKAIGLKEQIREQGIPLGGRVLIHGDS 80 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHH-cCCeEEEEeeccccccCCcceeehhhHHHHHHHcccHHHHHHhcCcccceeeeecCC
Confidence 3579999999999999999999 9999999998644322 2222222 245677777444333 222 221222222
Q ss_pred cccc--c--C--CCc-cccCHHHHHHHHHHHHHh-CCcEEE-E----eEEEEEEEeCCEEEEEeCCCcEEEeceEEecCC
Q 010693 158 KTKY--L--D--RPY-GRVSRNILKTKLLENCVS-NGVKFH-K----AKVWHVNHQEFESSIVCDDGNEIKASLIVDASG 224 (503)
Q Consensus 158 ~~~~--~--~--~~~-~~v~r~~l~~~L~~~~~~-~gv~~~-~----~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G 224 (503)
+... + . ..| .++.|+.+.+.++..+.. ..++++ + ....+++.......|.+.||.++.+|++|+|||
T Consensus 81 g~~~~~~~~~~~~~~i~r~~~r~ll~~lL~~a~~~~~ikf~~~~~~~~~~~~~~~~~~~~~v~l~~g~~~~~dlligCDG 160 (420)
T KOG2614|consen 81 GKEVSRILYGEPDEYILRINRRNLLQELLAEALPTGTIKFHSNLSCTSKDVEIETLGKKLVVHLSDGTTVKGDLLIGCDG 160 (420)
T ss_pred CCeeEecccCCchHHHHHHHHHHHHHHHHHhhcCCCeeecccccccccccceeeecccccceecCCCcEEEeeEEEEcCc
Confidence 1111 1 1 112 125566666655555544 445555 2 244445555556778899999999999999999
Q ss_pred CCcccccccCCC---CCccceeEEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCCeEE-Ee
Q 010693 225 FASSFVEYDKPR---NHGYQIAHGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNLVF-LE 300 (503)
Q Consensus 225 ~~s~vr~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~~-v~ 300 (503)
++|.||+++... ...++.+.|+-..-.+.++. .-++.. .++ .-+.|..|.....++ .-
T Consensus 161 a~S~Vr~~l~~~~p~~~~~~ayrg~~~~~~~~~~~--~~vf~~------------~~~----~~~~~~~~~~~~~~y~~~ 222 (420)
T KOG2614|consen 161 AYSKVRKWLGFKEPRYDGSQAYRGLGFIPNGIPFG--KKVFAI------------YGN----GLHSWPRPGFHLIAYWFL 222 (420)
T ss_pred hHHHHHHHhcccCCcceeEEEEeeeeeccCCCCcc--cceecc------------cCC----eEEEcccCCceEEEEEee
Confidence 999999976554 33666666765222222221 111110 001 122333333332222 00
Q ss_pred -----cccccCC--CC---CCHHHHHHHHHHHHhhc-C-CccceEeecce-ecccCCCCCC-CCCCCEEEeccCCCCcCC
Q 010693 301 -----ETSLVSR--PV---LSYKEVKRRMAARLRHM-G-IRVKRVIEDEK-CLIPMGGPLP-VIPQSVMAIGSTSGLVHP 366 (503)
Q Consensus 301 -----~~~~~~~--~~---~~~~~~~~~l~~~l~~~-~-~~~~~i~~~~~-~~~p~~~~~~-~~~~~v~liGDAa~~~~P 366 (503)
.+.+... +. ....++.+.+.+.+++. . .....+....- ..-|...... ..+++|+++|||+|.|.|
T Consensus 223 ~k~~t~t~~~~~~e~~~l~~~~~~v~~~~~en~~d~i~~~~~e~i~~t~l~~r~p~~~i~~~~s~~~vvL~GDAaHaM~P 302 (420)
T KOG2614|consen 223 DKSLTSTDFAPFDEPEKLKKTSLEVVDFFPENFPDIIELTGEESIVRTPLADRPPWPLISVKCSPGNVVLLGDAAHAMTP 302 (420)
T ss_pred cCCcccccccCcCCHHHHhhhHHHHHHHhHHhHHHHHHhcChHHhhhchhhhcCCcCeeeeccCCCeEEEecccccccCC
Confidence 0101110 00 01122333333333332 0 01111111101 1111111111 156799999999999999
Q ss_pred cccHHHHHHHHhHHHHHHHHHHHhcC
Q 010693 367 STGYMVARTMALAPALADAIAECLGS 392 (503)
Q Consensus 367 ~~G~G~~~al~~a~~lA~~l~~~l~~ 392 (503)
+.|||+|.|++|+.+||++|.++.+.
T Consensus 303 f~GQG~n~a~ED~~VLa~~L~~~~~d 328 (420)
T KOG2614|consen 303 FLGQGGNCAFEDCVVLAECLDEAIND 328 (420)
T ss_pred cccccccchHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999874
No 58
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.90 E-value=5.5e-22 Score=205.84 Aligned_cols=296 Identities=17% Similarity=0.183 Sum_probs=164.4
Q ss_pred cEEEECCCHHHHHHHHHHHccCC---CcEEEEcCCCCCCCCCcccc---hhHhhhhcCchhh--hhh------------c
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHS---VKVCCVDPSPLSTWPNNYGV---WVDEFEDIGLVDC--LDK------------T 146 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G---~~V~viE~~~~~~~~~~~g~---~~~~l~~~~~~~~--~~~------------~ 146 (503)
||+|||||+||.++|..|++ .+ ++|+|||+...+.....-+. ....++.+|+.+. +.. .
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~-~~~~~~~v~lie~~~~~~~~vGe~~~p~~~~~~~~lgi~e~~~~~~~~~~~k~g~~f~~ 79 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALAR-AGPDALSVTLIESPDIPRIGVGESTLPSLRPFLRRLGIDEADFMRACDATFKLGIRFVN 79 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHH-HCTCSSEEEEEE-SSS---SSEEE--THHHHCHHHHT--HHHHCHHCT-EEESEEEEES
T ss_pred CEEEECCCHHHHHHHHHHHH-hCCCCcEEEEEecCCCCCCCccccchHHHHHHHHHcCCChHHHHHHhCCeEeccEEeee
Confidence 79999999999999999999 77 99999997644322211111 2223456666332 221 2
Q ss_pred cCc--eEEEecCCc-c-------------------------------------c--------ccCCCccc-cCHHHHHHH
Q 010693 147 WPM--TCVFINDHK-T-------------------------------------K--------YLDRPYGR-VSRNILKTK 177 (503)
Q Consensus 147 ~~~--~~~~~~~~~-~-------------------------------------~--------~~~~~~~~-v~r~~l~~~ 177 (503)
|.. ...+.+.+. . + .....|++ ++|..|++.
T Consensus 80 w~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlDR~~fd~~ 159 (454)
T PF04820_consen 80 WGERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLDRAKFDQF 159 (454)
T ss_dssp SSSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEEHHHHHHH
T ss_pred cCCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEeHHHHHHH
Confidence 331 122221111 0 0 00123444 899999999
Q ss_pred HHHHHHhCCcEEEEeEEEEEEEeCCE--EEEEeCCCcEEEeceEEecCCCCccccccc-CCC----CCccceeEEEEEEe
Q 010693 178 LLENCVSNGVKFHKAKVWHVNHQEFE--SSIVCDDGNEIKASLIVDASGFASSFVEYD-KPR----NHGYQIAHGILAEV 250 (503)
Q Consensus 178 L~~~~~~~gv~~~~~~v~~i~~~~~~--~~v~~~~g~~i~a~~vI~A~G~~s~vr~~~-~~~----~~~~~~~~g~~~~~ 250 (503)
|++.+++.||+++..+|+++..++++ ..|++.+|++++||+||||+|..+.+.+.. +.. .........+...+
T Consensus 160 L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L~~~~L~~~~~~~~~~L~~d~av~~~~ 239 (454)
T PF04820_consen 160 LRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLLARKALKVGFRDWSDWLPNDRAVAVQV 239 (454)
T ss_dssp HHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CCCCCCT-EEEEEETTTCEEEEEEEEEE
T ss_pred HHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchhhHhhhcCCCccccccccccEEEEEec
Confidence 99999999999996678888877653 468888999999999999999999877642 110 11111112333333
Q ss_pred cCCC-CCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCCeEEEecccccCCCCCCHHHHHHHHHHHHhhcCCc
Q 010693 251 ESHP-FDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNLVFLEETSLVSRPVLSYKEVKRRMAARLRHMGIR 329 (503)
Q Consensus 251 ~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 329 (503)
+... ..+.+... ... .+|+|.+|+.+++.. +.. + .....+.++..+.+.+++......
T Consensus 240 ~~~~~~~~~T~~~---------------a~~---~GW~W~IPL~~~~~~-G~V-~-s~~~~s~~~A~~~l~~~l~~~~~~ 298 (454)
T PF04820_consen 240 PNEDPPEPYTRST---------------AFE---AGWIWYIPLQNRRGS-GYV-Y-SSDFISDDEAEAELLAYLGGSPEA 298 (454)
T ss_dssp E-SSCTTSSEEEE---------------EES---SEEEEEEEESSEEEE-EEE-E-ETTTSHHHHHHHHHHHHHTCHCTT
T ss_pred CcCCCCCCceeEE---------------ecC---CceEEEccCCCcceE-EEE-e-ccccCCHHHHHHHHHHhcchhhhc
Confidence 3221 11111111 111 379999999987665 221 1 122335556666666666543211
Q ss_pred cceEeecceecccCCCCCCCCCCCEEEeccCCCCcCCcccHHHHHHHHhHHHHHHHHHHHhcCCCCCCCchhhHHHHhhc
Q 010693 330 VKRVIEDEKCLIPMGGPLPVIPQSVMAIGSTSGLVHPSTGYMVARTMALAPALADAIAECLGSTRMIRGRPLHQKVWNGL 409 (503)
Q Consensus 330 ~~~i~~~~~~~~p~~~~~~~~~~~v~liGDAa~~~~P~~G~G~~~al~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~~ 409 (503)
....+....+ .....+.+|+++|||||++++|+.+.|+..++..+..+++.+.... .+...++.|++.++..
T Consensus 299 ~~~~i~~~~g-----~~~~~~~~n~vavGdAAgFiDPL~StGI~la~~aa~~l~~~l~~~~---~~~~~~~~Yn~~~~~~ 370 (454)
T PF04820_consen 299 EPRHIRFRSG-----RRKQFWGKNCVAVGDAAGFIDPLESTGIHLALSAAEALAEALPDDD---FSPAALDRYNRRMRRE 370 (454)
T ss_dssp SCEEEE-S-E-----EESSSEETTEEE-CCCTEE--GGGSHHHHHHHHHHHHHHHTHHCTT---CCHHHHHHHHHHHHHH
T ss_pred chhhhccccc-----chhhcccCCEEEEcchhhccCccccccHHHHHHHHHHHHHhcccCC---CCHHHHHHHHHHHHHH
Confidence 1111111111 1223467899999999999999999999999997666666554221 1223466677666554
Q ss_pred CcH
Q 010693 410 WPI 412 (503)
Q Consensus 410 ~~~ 412 (503)
|..
T Consensus 371 ~~~ 373 (454)
T PF04820_consen 371 YER 373 (454)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 59
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.86 E-value=1.5e-20 Score=207.28 Aligned_cols=290 Identities=16% Similarity=0.112 Sum_probs=161.1
Q ss_pred CcEEEECCCHHHHHHHHHHHccC--CCcEEEEcCCCCCCC-CCcccchhHh---hhhcC--chhhhh---hccCceEEEe
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRH--SVKVCCVDPSPLSTW-PNNYGVWVDE---FEDIG--LVDCLD---KTWPMTCVFI 154 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~--G~~V~viE~~~~~~~-~~~~g~~~~~---l~~~~--~~~~~~---~~~~~~~~~~ 154 (503)
.+|+|||||||||++|+.|++ + |++|+|+|+.+.... ...+..+... +...+ +...+. ..|....+..
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~-~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKL-LDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHF 79 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHH-hCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEE
Confidence 379999999999999999999 7 899999999875321 1111222222 33333 111111 2355555554
Q ss_pred cCCcccccCCCccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCccccccc
Q 010693 155 NDHKTKYLDRPYGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSFVEYD 233 (503)
Q Consensus 155 ~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~vr~~~ 233 (503)
.+.........+..+.|..|.+.|.+++.+.|++++ +++|+++.. ...++|+||+|||.+|.+|+..
T Consensus 80 ~g~~~~~~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~------------~~~~~D~VVgADG~~S~vR~~~ 147 (765)
T PRK08255 80 KGRRIRSGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQA------------LAADADLVIASDGLNSRIRTRY 147 (765)
T ss_pred CCEEEEECCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhh------------hhcCCCEEEEcCCCCHHHHHHH
Confidence 322111112334458999999999999999999999 888876542 1258999999999999998843
Q ss_pred C----CCCCccceeEEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCCe-EE-Eeccccc--
Q 010693 234 K----PRNHGYQIAHGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNL-VF-LEETSLV-- 305 (503)
Q Consensus 234 ~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~-~~-v~~~~~~-- 305 (503)
. +........+.+. ... ..++. ..+..... ..| ..+...+|.+++. .+ +..+...
T Consensus 148 ~~~~~~~~~~~~~~~~w~-g~~-~~~~~--~~~~~~~~----------~~g---~~~~~~y~~~~~~~~~~~~~~~~~~~ 210 (765)
T PRK08255 148 ADTFQPDIDTRRCRFVWL-GTH-KVFDA--FTFAFEET----------EHG---WFQAHAYRFDDDTSTFIVETPEEVWR 210 (765)
T ss_pred HhhcCCceecCCCceEEe-cCC-Ccccc--eeEEEEec----------CCc---eEEEEEeeeCCCCcEEEEEcCHHHHH
Confidence 2 1100000011111 111 11111 11100000 011 1112234544332 12 2211100
Q ss_pred --CCCCCCHHHHHHHHHHHHhhcCCccceEeec-------ceecccCCCCCCCCCCC----EEEeccCCCCcCCcccHHH
Q 010693 306 --SRPVLSYKEVKRRMAARLRHMGIRVKRVIED-------EKCLIPMGGPLPVIPQS----VMAIGSTSGLVHPSTGYMV 372 (503)
Q Consensus 306 --~~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~-------~~~~~p~~~~~~~~~~~----v~liGDAa~~~~P~~G~G~ 372 (503)
.....+.++..+.+.+.+....... .++.. ....++.........++ ++++|||||.++|..|||+
T Consensus 211 ~~~~~~~~~~~~~~~l~~~f~~~~~~~-~li~~~~~~~~~~w~~~~~~~~~~w~~gr~~~~v~liGDAAH~~~P~~GqG~ 289 (765)
T PRK08255 211 AAGLDEMSQEESIAFCEKLFADYLDGH-PLMSNASHLRGSAWINFPRVVCERWVHWNRRVPVVLMGDAAHTAHFSIGSGT 289 (765)
T ss_pred hcCCccCCHHHHHHHHHHHhHHhcCCC-cccccccccccceeeecceeccCCCccCCCcccEEEEEcCcccCCCCcchhH
Confidence 1122345555566665554432111 11111 01111111111224566 9999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHhcCCCCCCCchhhHHHHhh
Q 010693 373 ARTMALAPALADAIAECLGSTRMIRGRPLHQKVWNG 408 (503)
Q Consensus 373 ~~al~~a~~lA~~l~~~l~~~~~~~~l~~y~~~~~~ 408 (503)
++||+||..||++|..... +....++.|++.++.
T Consensus 290 ~~aieDa~~La~~L~~~~~--~~~~al~~ye~~R~~ 323 (765)
T PRK08255 290 KLALEDAIELARCLHEHPG--DLPAALAAYEEERRV 323 (765)
T ss_pred HHHHHHHHHHHHHHHHccc--cHHHHHHHHHHHHHH
Confidence 9999999999999986421 234578888876653
No 60
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.86 E-value=3.3e-20 Score=179.60 Aligned_cols=303 Identities=20% Similarity=0.262 Sum_probs=185.8
Q ss_pred CCCCcCcEEEECCCHHHHHHHHHHHc---cCCCcEEEEcCC--CCCC-C------CCccc----chhHhhhhcCchhhhh
Q 010693 81 SDRIRYDVIIIGTGPAGLRLAEQVSS---RHSVKVCCVDPS--PLST-W------PNNYG----VWVDEFEDIGLVDCLD 144 (503)
Q Consensus 81 ~~~~~~DvvIVGgGpaGl~~A~~La~---~~G~~V~viE~~--~~~~-~------~~~~g----~~~~~l~~~~~~~~~~ 144 (503)
++...|||+||||||+|+++|..|.. -+..+|.++|-. ++.. + .+.+. .....++.++.++.+.
T Consensus 32 ~~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~ 111 (481)
T KOG3855|consen 32 TDTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIF 111 (481)
T ss_pred CCcccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHHhh
Confidence 34558999999999999999999987 235799999977 3221 1 01110 0222345556544433
Q ss_pred h-ccC-ceEE-EecCCccc-------ccCCCccc-cCHHHHHHHHHH-HH--HhCCcEEE-EeEEEEEEEe-------C-
Q 010693 145 K-TWP-MTCV-FINDHKTK-------YLDRPYGR-VSRNILKTKLLE-NC--VSNGVKFH-KAKVWHVNHQ-------E- 201 (503)
Q Consensus 145 ~-~~~-~~~~-~~~~~~~~-------~~~~~~~~-v~r~~l~~~L~~-~~--~~~gv~~~-~~~v~~i~~~-------~- 201 (503)
+ ... -..+ .++.-... ....+.++ +....+...|.. .+ +...+++. .+++.++... +
T Consensus 112 ~~R~~~~~~~~v~Ds~s~a~I~~~~d~~~~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~ 191 (481)
T KOG3855|consen 112 HDRYQKFSRMLVWDSCSAALILFDHDNVGIDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNG 191 (481)
T ss_pred hhccccccceeeecccchhhhhhccccccccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCc
Confidence 2 111 1111 11211111 11223344 556666666663 22 33679998 8888888762 1
Q ss_pred CEEEEEeCCCcEEEeceEEecCCCCcccccccCCCCCcccee-EEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCC
Q 010693 202 FESSIVCDDGNEIKASLIVDASGFASSFVEYDKPRNHGYQIA-HGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASN 280 (503)
Q Consensus 202 ~~~~v~~~~g~~i~a~~vI~A~G~~s~vr~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g 280 (503)
..+.+.+.||..+..|++|+|||++|.+|++.......+.+. +|.+++..-..- .......++.|.+.|
T Consensus 192 ~~~~i~l~dg~~~~~~LLigAdg~Ns~vR~~snid~~~~ny~~havVAtl~l~~~----------~~~~~~AwQRFlP~G 261 (481)
T KOG3855|consen 192 MWFHITLTDGINFATDLLIGADGFNSVVRKASNIDVASWNYDQHAVVATLKLEEE----------AILNGVAWQRFLPTG 261 (481)
T ss_pred ceEEEEeccCceeeeceeeccccccchhhhhcCCCcccccccceeeeEEEEeccc----------ccccchhHHhcCCCC
Confidence 256778889999999999999999999999887776655543 566555432110 111223455677777
Q ss_pred CCCCeEEEEeecCCC---eEEEecccccCC-CCCCHHHHHHHHHHH----------------------------Hhhc--
Q 010693 281 LKLPTFLYAMPFDSN---LVFLEETSLVSR-PVLSYKEVKRRMAAR----------------------------LRHM-- 326 (503)
Q Consensus 281 ~~~~~~~~~~P~~~~---~~~v~~~~~~~~-~~~~~~~~~~~l~~~----------------------------l~~~-- 326 (503)
| +.++|..++ .+|-........ ..++.|.+.+.+... +...
T Consensus 262 ---p--iAllpl~d~~s~LvWSts~~~a~~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~al~~~~~~~~sl~~~~k~ 336 (481)
T KOG3855|consen 262 ---P--IALLPLSDTLSSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESLLNTSKR 336 (481)
T ss_pred ---c--eeecccccccccceeecCHHHHHHHhcCCchhHHHHHHHHHhccCCCchhhhchhhhhcchhhccHHHHhccCc
Confidence 6 777888865 444332222111 122233222222111 1111
Q ss_pred ------CCccceEeecceecccCCCCCC--CCCCCEEEeccCCCCcCCcccHHHHHHHHhHHHHHHHHHHHhcCCCCCCC
Q 010693 327 ------GIRVKRVIEDEKCLIPMGGPLP--VIPQSVMAIGSTSGLVHPSTGYMVARTMALAPALADAIAECLGSTRMIRG 398 (503)
Q Consensus 327 ------~~~~~~i~~~~~~~~p~~~~~~--~~~~~v~liGDAa~~~~P~~G~G~~~al~~a~~lA~~l~~~l~~~~~~~~ 398 (503)
...+.++....+..+|++..+. .+.+|+.++|||||-++|..|||.|++..|...|.+.+.++..++-+...
T Consensus 337 ~~~~q~pp~V~~v~dksRa~FPLgf~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~DlgS 416 (481)
T KOG3855|consen 337 LANQQYPPSVFEVGDKSRAQFPLGFGHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSGLDLGS 416 (481)
T ss_pred ccccccCCeEEEecccceeecccccccHHHhcCCchhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhcccccc
Confidence 1122334444566777765443 38899999999999999999999999999999999999999988876544
No 61
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.79 E-value=9.4e-18 Score=160.97 Aligned_cols=286 Identities=18% Similarity=0.201 Sum_probs=173.6
Q ss_pred CCCCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchh-----HhhhhcCchhhhhhc----cCceE
Q 010693 81 SDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWV-----DEFEDIGLVDCLDKT----WPMTC 151 (503)
Q Consensus 81 ~~~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~-----~~l~~~~~~~~~~~~----~~~~~ 151 (503)
.....+||||||||.+|.++|+.|++ .|.+|+||||+-.... +-.|..+ ..+.++|+++|++.. ..+..
T Consensus 41 ~~~~~~DvIIVGAGV~GsaLa~~L~k-dGRrVhVIERDl~EPd-RivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ 118 (509)
T KOG1298|consen 41 RNDGAADVIIVGAGVAGSALAYALAK-DGRRVHVIERDLSEPD-RIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYA 118 (509)
T ss_pred ccCCcccEEEECCcchHHHHHHHHhh-CCcEEEEEecccccch-HHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeE
Confidence 34457999999999999999999999 9999999999733211 2223322 347899998887652 23444
Q ss_pred EEecCCcccccC--------CCccc-cCHHHHHHHHHHHHHh-CCcEEEEeEEEEEEEeCCE---EEEEeCCCc--EEEe
Q 010693 152 VFINDHKTKYLD--------RPYGR-VSRNILKTKLLENCVS-NGVKFHKAKVWHVNHQEFE---SSIVCDDGN--EIKA 216 (503)
Q Consensus 152 ~~~~~~~~~~~~--------~~~~~-v~r~~l~~~L~~~~~~-~gv~~~~~~v~~i~~~~~~---~~v~~~~g~--~i~a 216 (503)
++.+++ ...+. .+.++ .+.-+|.+.|++++.+ ++|++.+..|.++..+++. ++.....|+ +..|
T Consensus 119 ifk~gk-~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGtV~sLlee~gvvkGV~yk~k~gee~~~~A 197 (509)
T KOG1298|consen 119 IFKDGK-EVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEGTVKSLLEEEGVVKGVTYKNKEGEEVEAFA 197 (509)
T ss_pred EEeCCc-eeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeeeeHHHHHhccCeEEeEEEecCCCceEEEec
Confidence 554443 22221 12233 4556899999998876 7899998899998887773 333334454 5778
Q ss_pred ceEEecCCCCcccccccCC-CCC-ccceeEEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecC-
Q 010693 217 SLIVDASGFASSFVEYDKP-RNH-GYQIAHGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFD- 293 (503)
Q Consensus 217 ~~vI~A~G~~s~vr~~~~~-~~~-~~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~- 293 (503)
-+-|.|||..|.+|+.+-. ... -..++.|+..+-..-++....=+++ .. |..+-+.|.+
T Consensus 198 pLTvVCDGcfSnlRrsL~~~~v~~V~S~fVG~vl~N~~l~~p~hghvIL---------------~~---pspil~Y~ISS 259 (509)
T KOG1298|consen 198 PLTVVCDGCFSNLRRSLCDPKVEEVPSYFVGLVLKNCRLPAPNHGHVIL---------------SK---PSPILVYQISS 259 (509)
T ss_pred ceEEEecchhHHHHHHhcCCcccccchheeeeeecCCCCCCCCcceEEe---------------cC---CCcEEEEEecc
Confidence 9999999999999985443 222 4456777754433222221111111 11 3335555555
Q ss_pred -CCeEEEecccccCCCCCCHHHHHHHHHHHH-hhcCCccc-----eEeecceecccCCCCCC--CCCCCEEEeccCCCCc
Q 010693 294 -SNLVFLEETSLVSRPVLSYKEVKRRMAARL-RHMGIRVK-----RVIEDEKCLIPMGGPLP--VIPQSVMAIGSTSGLV 364 (503)
Q Consensus 294 -~~~~~v~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~-----~i~~~~~~~~p~~~~~~--~~~~~v~liGDAa~~~ 364 (503)
+-+++++..... -+.....++...+.+.+ +....... .+.+..-...|-....+ ....+++++|||-.+=
T Consensus 260 tEvRcl~~v~g~~-~Psi~~gem~~~mk~~v~PqiP~~lR~~F~~av~~g~irsmpn~~mpa~~~~~~G~illGDAfNMR 338 (509)
T KOG1298|consen 260 TEVRCLVDVPGQK-LPSIANGEMATYMKESVAPQIPEKLRESFLEAVDEGNIRSMPNSSMPATLNDKKGVILLGDAFNMR 338 (509)
T ss_pred hheEEEEecCccc-CCcccchhHHHHHHHhhCcCCCHHHHHHHHHHhhccchhcCccccCCCCcCCCCceEEEccccccc
Confidence 446666554221 12222223333333222 11111111 11111112223222222 2567999999999999
Q ss_pred CCcccHHHHHHHHhHHHHHHHHHH
Q 010693 365 HPSTGYMVARTMALAPALADAIAE 388 (503)
Q Consensus 365 ~P~~G~G~~~al~~a~~lA~~l~~ 388 (503)
||++|.||.-++.|..+|-+.|..
T Consensus 339 HPltggGMtV~l~Di~lLr~ll~p 362 (509)
T KOG1298|consen 339 HPLTGGGMTVALSDIVLLRRLLKP 362 (509)
T ss_pred CCccCCceEeehhHHHHHHHHhcc
Confidence 999999999999999998877764
No 62
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.59 E-value=2.3e-14 Score=140.16 Aligned_cols=139 Identities=22% Similarity=0.220 Sum_probs=96.4
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCC------cccc-----hhHhhhhcC-------------
Q 010693 83 RIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPN------NYGV-----WVDEFEDIG------------- 138 (503)
Q Consensus 83 ~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~------~~g~-----~~~~l~~~~------------- 138 (503)
+..+||+|||||||||+||..+++ +|.+|+|||+.++.+..- .|.+ ..+.+...+
T Consensus 1 ~~~~dviIIGgGpAGlMaA~~aa~-~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~f 79 (408)
T COG2081 1 MERFDVIIIGGGPAGLMAAISAAK-AGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARF 79 (408)
T ss_pred CCcceEEEECCCHHHHHHHHHHhh-cCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhC
Confidence 357999999999999999999999 999999999998763211 1111 111111111
Q ss_pred -chhhhhhccC-ceEEEecCCcccccCCCccc-cCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEE
Q 010693 139 -LVDCLDKTWP-MTCVFINDHKTKYLDRPYGR-VSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEI 214 (503)
Q Consensus 139 -~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i 214 (503)
-++.+..... +...+.. ...+-|+. -....+.+.|+.++++.||+++ +++|.+++.++....+.+.+|.++
T Consensus 80 t~~d~i~~~e~~Gi~~~e~-----~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i 154 (408)
T COG2081 80 TPEDFIDWVEGLGIALKEE-----DLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETV 154 (408)
T ss_pred CHHHHHHHHHhcCCeeEEc-----cCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEE
Confidence 1222111111 0111111 11112222 2357889999999999999999 999999999998999999999899
Q ss_pred EeceEEecCCCCc
Q 010693 215 KASLIVDASGFAS 227 (503)
Q Consensus 215 ~a~~vI~A~G~~s 227 (503)
+||.+|.|+|..|
T Consensus 155 ~~d~lilAtGG~S 167 (408)
T COG2081 155 KCDSLILATGGKS 167 (408)
T ss_pred EccEEEEecCCcC
Confidence 9999999999766
No 63
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.57 E-value=1.4e-13 Score=139.19 Aligned_cols=83 Identities=18% Similarity=0.166 Sum_probs=61.6
Q ss_pred ccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEE-EEeCCCcEEEeceEEecCCCCccc-ccccCCCCCccceeE
Q 010693 168 RVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESS-IVCDDGNEIKASLIVDASGFASSF-VEYDKPRNHGYQIAH 244 (503)
Q Consensus 168 ~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~-v~~~~g~~i~a~~vI~A~G~~s~v-r~~~~~~~~~~~~~~ 244 (503)
.++...+.+.|.+.+++.|++++ +++|+++..+++.+. |.+.+|+ ++||.||.|+|.++.. .+..+.. .......
T Consensus 143 ~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~l~~~~~~~-~~~~~~~ 220 (358)
T PF01266_consen 143 VIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQLLPLLGLD-LPLRPVR 220 (358)
T ss_dssp EEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHHHHHTTTTS-STEEEEE
T ss_pred cccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccceeeeeccccc-ccccccc
Confidence 47889999999999999999999 889999999999988 9999987 9999999999988743 2222221 1334455
Q ss_pred EEEEEecC
Q 010693 245 GILAEVES 252 (503)
Q Consensus 245 g~~~~~~~ 252 (503)
+....+..
T Consensus 221 ~~~~~~~~ 228 (358)
T PF01266_consen 221 GQVLVLEP 228 (358)
T ss_dssp EEEEEEEG
T ss_pred eEEEEEcc
Confidence 55555553
No 64
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=99.56 E-value=4.5e-13 Score=130.15 Aligned_cols=307 Identities=21% Similarity=0.258 Sum_probs=165.8
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHc-----cCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhh----------c
Q 010693 82 DRIRYDVIIIGTGPAGLRLAEQVSS-----RHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDK----------T 146 (503)
Q Consensus 82 ~~~~~DvvIVGgGpaGl~~A~~La~-----~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~----------~ 146 (503)
....+||+|||||||||++|+.|.+ +..++|||+|+....+...-.|... +..-+++++.. .
T Consensus 73 ~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGavi---ep~aldEL~P~wke~~apl~t~ 149 (621)
T KOG2415|consen 73 ESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVI---EPGALDELLPDWKEDGAPLNTP 149 (621)
T ss_pred hhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceee---ccchhhhhCcchhhcCCccccc
Confidence 4467999999999999999999877 3468999999987654322222211 11111111100 0
Q ss_pred cCceEEEe-cCCcccccC--CCc----cc-cCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCC-EE-EEEeCC-----
Q 010693 147 WPMTCVFI-NDHKTKYLD--RPY----GR-VSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEF-ES-SIVCDD----- 210 (503)
Q Consensus 147 ~~~~~~~~-~~~~~~~~~--~~~----~~-v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~-~~-~v~~~~----- 210 (503)
.....+.| .......++ .++ .+ |.-..+.++|-+++++.||+++ +..+.++..+++ .+ .|.++|
T Consensus 150 vT~d~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k 229 (621)
T KOG2415|consen 150 VTSDKFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISK 229 (621)
T ss_pred ccccceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccC
Confidence 00011111 111111111 111 13 6789999999999999999999 888888877654 22 233332
Q ss_pred ----------CcEEEeceEEecCCCCcccccc----cCCCC-C-ccceeEEE--EEEecCCCCCCCceEE-eeccCCCCC
Q 010693 211 ----------GNEIKASLIVDASGFASSFVEY----DKPRN-H-GYQIAHGI--LAEVESHPFDLDKMVL-MDWRDSHLG 271 (503)
Q Consensus 211 ----------g~~i~a~~vI~A~G~~s~vr~~----~~~~~-~-~~~~~~g~--~~~~~~~~~~~~~~~~-~d~~~~~~~ 271 (503)
|-++.|+.-|.|.|.+..+.+. .+.+. . ...+..|+ ..+++...+.+..+.- +.|--..
T Consensus 230 ~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n~e~qtYglGlKEvWei~~~~~~pG~v~HT~GwPl~~-- 307 (621)
T KOG2415|consen 230 DGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLRENCEPQTYGLGLKEVWEIDPENHNPGEVAHTLGWPLDN-- 307 (621)
T ss_pred CCCccccccccceecceeEEEeccccchhHHHHHHHhCcccCCCcceeccccceeEecChhhcCCcceeeeccCcccC--
Confidence 3479999999999987765542 22221 1 11222333 2233433444443321 1221110
Q ss_pred CCcccccCCCCCCeEEEEeecCCCeEEEec---ccccCCCCCC-HHHHHHHHHHHHhhcCCccceEeec------ceecc
Q 010693 272 NEPYLRASNLKLPTFLYAMPFDSNLVFLEE---TSLVSRPVLS-YKEVKRRMAARLRHMGIRVKRVIED------EKCLI 341 (503)
Q Consensus 272 ~~~~~~~~g~~~~~~~~~~P~~~~~~~v~~---~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~i~~~------~~~~~ 341 (503)
..-+| +|+|-+ .+..+.++. -.+ ..+-++ .+++++ + ++. ..+..+++. ....+
T Consensus 308 ----~tYGG----sFlYh~--~d~~VavGlVVgLdY-~NP~lsP~~EFQk-~----K~h-P~i~~vleGgk~i~YgARaL 370 (621)
T KOG2415|consen 308 ----DTYGG----SFLYHF--NDPLVAVGLVVGLDY-KNPYLSPYKEFQK-M----KHH-PSISKVLEGGKRIAYGARAL 370 (621)
T ss_pred ----CccCc----eeEEEc--CCCeEEEEEEEEecC-CCCCCCHHHHHHH-h----hcC-cchhhhhcCcceeeehhhhh
Confidence 11133 577765 344443221 112 122333 233322 2 121 111112221 11223
Q ss_pred cCCCCC--CC-CCCCEEEeccCCCCcCCcccHHHHHHHHhHHHHHHHHHHHhcCCCCC--CC--chhhHHHHhhcC
Q 010693 342 PMGGPL--PV-IPQSVMAIGSTSGLVHPSTGYMVARTMALAPALADAIAECLGSTRMI--RG--RPLHQKVWNGLW 410 (503)
Q Consensus 342 p~~~~~--~~-~~~~v~liGDAa~~~~P~~G~G~~~al~~a~~lA~~l~~~l~~~~~~--~~--l~~y~~~~~~~~ 410 (503)
.-++.. |. +-++=++||-+|++++---=-|-.+||.++..+|+.|-+++.+.... .. ...|++..++.|
T Consensus 371 NEGGfQsiPkl~FPGG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~~~~~~k~~~~~~~~Ye~nlkds~ 446 (621)
T KOG2415|consen 371 NEGGFQSIPKLVFPGGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKGLPQSKMAGLDPTTYEENLKDSY 446 (621)
T ss_pred ccCCcccCcccccCCceEeecccccccccccccchhhhhcchhHHHHHHHHHhcCccccccccChhhHHHhhhhhH
Confidence 333333 22 44566789999999988777788999999999999999999766422 12 447877666533
No 65
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.54 E-value=3.7e-12 Score=130.23 Aligned_cols=61 Identities=15% Similarity=0.153 Sum_probs=52.8
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCcc
Q 010693 167 GRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASS 228 (503)
Q Consensus 167 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~ 228 (503)
++++...+...+.+.+.+.|++++ +++|+++..+++.+.|.+++| ++.||.||.|+|.++.
T Consensus 144 g~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 144 GFLRPELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVK 205 (376)
T ss_pred CEEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchh
Confidence 357778888888888888999999 899999998888888888777 7999999999998753
No 66
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.53 E-value=4.1e-12 Score=134.58 Aligned_cols=205 Identities=12% Similarity=0.169 Sum_probs=125.0
Q ss_pred ccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCC----cEEEeceEEecCCCCcc-ccc-ccCCCC-Cc
Q 010693 168 RVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDG----NEIKASLIVDASGFASS-FVE-YDKPRN-HG 239 (503)
Q Consensus 168 ~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g----~~i~a~~vI~A~G~~s~-vr~-~~~~~~-~~ 239 (503)
+++...+...+.+.+.+.|++++ +++|+++..+++.+.|.+.++ .+++|+.||.|+|.++. +.+ ..+... ..
T Consensus 151 ~vd~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~~~~ 230 (502)
T PRK13369 151 WVDDARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWVTDVIHRVAGSNSSRN 230 (502)
T ss_pred eecHHHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccHHHHHhhccCCCCCcc
Confidence 36778888889999999999999 889999998877777776554 26999999999998873 433 223221 33
Q ss_pred cceeEEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCCeEEEecccccC-----CCCCCHHH
Q 010693 240 YQIAHGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNLVFLEETSLVS-----RPVLSYKE 314 (503)
Q Consensus 240 ~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~~v~~~~~~~-----~~~~~~~~ 314 (503)
.....|....++. .+........ . ..+| .++|++|..++.++++.+.... ....+.++
T Consensus 231 v~p~kG~~lv~~~-~~~~~~~~~~--~----------~~dg----r~~~i~P~~~~~~liGtTd~~~~~~~~~~~~~~~~ 293 (502)
T PRK13369 231 VRLVKGSHIVVPK-FWDGAQAYLF--Q----------NPDK----RVIFANPYEGDFTLIGTTDIAYEGDPEDVAADEEE 293 (502)
T ss_pred eEEeeEEEEEeCC-ccCCCceEEE--e----------CCCC----eEEEEEEecCCEEEEEecCccccCCCCCCCCCHHH
Confidence 4556676665543 2222211111 0 1133 4689999988888877765321 12334444
Q ss_pred HH---HHHHHHHhhcCCccceEeecceecccCCCCC---CC--CCCCEEEecc---CCCCcCCcccHHHHHHHHhHHHHH
Q 010693 315 VK---RRMAARLRHMGIRVKRVIEDEKCLIPMGGPL---PV--IPQSVMAIGS---TSGLVHPSTGYMVARTMALAPALA 383 (503)
Q Consensus 315 ~~---~~l~~~l~~~~~~~~~i~~~~~~~~p~~~~~---~~--~~~~v~liGD---Aa~~~~P~~G~G~~~al~~a~~lA 383 (503)
+. +...++++ ..+....+.....++.|+.... +. ..+.++..-+ ..+.++ ..|.++.+.-..|..++
T Consensus 294 i~~ll~~~~~~~~-~~l~~~~i~~~waGlRPl~~d~~~~~~~~sR~~~i~~~~~~g~~gli~-i~Ggk~Tt~r~~Ae~v~ 371 (502)
T PRK13369 294 IDYLLDAANRYFK-EKLRREDVVHSFSGVRPLFDDGAGNPSAVTRDYVFDLDAETGGAPLLS-VFGGKITTFRKLAEHAL 371 (502)
T ss_pred HHHHHHHHHHhhC-CCCCHhHEEEEeeceEEcCCCCCCCcccCCcceEEeeccccCCCCeEE-EeCChHhhHHHHHHHHH
Confidence 43 33333332 1234456677778888875321 11 1222222211 123333 34668888888889988
Q ss_pred HHHHHHhc
Q 010693 384 DAIAECLG 391 (503)
Q Consensus 384 ~~l~~~l~ 391 (503)
+.+.+.+.
T Consensus 372 d~~~~~l~ 379 (502)
T PRK13369 372 ERLKPFFP 379 (502)
T ss_pred HHHHHhcC
Confidence 88888865
No 67
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.52 E-value=1.1e-13 Score=141.18 Aligned_cols=136 Identities=22% Similarity=0.260 Sum_probs=79.3
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCC------Cccc--------------------chhHhhhhcCc
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWP------NNYG--------------------VWVDEFEDIGL 139 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~------~~~g--------------------~~~~~l~~~~~ 139 (503)
|||+|||||||||+||+.|++ .|.+|+||||++..+.. ..|. +....+...+.
T Consensus 1 ydviIIGgGaAGl~aA~~aa~-~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~ 79 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAE-KGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSP 79 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHH-TT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-H
T ss_pred CcEEEECCCHHHHHHHHHHHh-CCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCH
Confidence 899999999999999999999 99999999999776310 0011 11112333333
Q ss_pred hhhhhhccC-ceEEEecCCcccccCCCccc-cCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCE-EEEEeCCCcEEE
Q 010693 140 VDCLDKTWP-MTCVFINDHKTKYLDRPYGR-VSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFE-SSIVCDDGNEIK 215 (503)
Q Consensus 140 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~-~~v~~~~g~~i~ 215 (503)
.+.+..... +........ ...|.. -....+.+.|++.+++.||+++ +++|.+++.++++ +.|.++++.++.
T Consensus 80 ~d~~~ff~~~Gv~~~~~~~-----gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~ 154 (409)
T PF03486_consen 80 EDLIAFFEELGVPTKIEED-----GRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYE 154 (409)
T ss_dssp HHHHHHHHHTT--EEE-ST-----TEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEE
T ss_pred HHHHHHHHhcCCeEEEcCC-----CEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCccccc
Confidence 332222111 111111111 011111 2457888999999999999999 9999999998876 888886777999
Q ss_pred eceEEecCCCCc
Q 010693 216 ASLIVDASGFAS 227 (503)
Q Consensus 216 a~~vI~A~G~~s 227 (503)
||.||.|+|..|
T Consensus 155 a~~vILAtGG~S 166 (409)
T PF03486_consen 155 ADAVILATGGKS 166 (409)
T ss_dssp ESEEEE----SS
T ss_pred CCEEEEecCCCC
Confidence 999999999876
No 68
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.52 E-value=8.4e-12 Score=132.13 Aligned_cols=205 Identities=15% Similarity=0.227 Sum_probs=121.1
Q ss_pred ccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCC---Cc--EEEeceEEecCCCCcc-ccc-ccCCC-CC
Q 010693 168 RVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDD---GN--EIKASLIVDASGFASS-FVE-YDKPR-NH 238 (503)
Q Consensus 168 ~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~---g~--~i~a~~vI~A~G~~s~-vr~-~~~~~-~~ 238 (503)
+++...+...+.+.+.+.|++++ +++|+++..+++.+.|.+.+ |+ +++|+.||.|+|.++. +.+ ..+.. ..
T Consensus 151 ~vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~~~ 230 (508)
T PRK12266 151 WVDDARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWVKQFLDDGLGLPSPY 230 (508)
T ss_pred ccCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccHHHHHhhccCCCCCc
Confidence 36778888888888999999999 89999998887777776653 43 6999999999998873 322 22221 22
Q ss_pred ccceeEEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCCeEEEeccccc--C---CCCCCHH
Q 010693 239 GYQIAHGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNLVFLEETSLV--S---RPVLSYK 313 (503)
Q Consensus 239 ~~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~~v~~~~~~--~---~~~~~~~ 313 (503)
......|....++. .+......+. . ..+| .++|++|..++..+++.+... . ....+.+
T Consensus 231 ~i~p~kG~~lvl~~-~~~~~~~~~~--~----------~~dg----r~v~~~P~~~g~~liGttd~~~~~~~~~~~~~~~ 293 (508)
T PRK12266 231 GIRLVKGSHIVVPR-LFDHDQAYIL--Q----------NPDG----RIVFAIPYEDDFTLIGTTDVEYKGDPAKVAISEE 293 (508)
T ss_pred ceeeeeeEEEEECC-cCCCCcEEEE--e----------CCCC----CEEEEEEeCCCeEEEecCCCCCCCCCCCCCCCHH
Confidence 34445566555442 2222222111 1 1133 578999998888888776432 1 1223344
Q ss_pred HHH---HHHHHHHhhcCCccceEeecceecccCCCC-CC--C--CCCCEEEecc---CCCCcCCcccHHHHHHHHhHHHH
Q 010693 314 EVK---RRMAARLRHMGIRVKRVIEDEKCLIPMGGP-LP--V--IPQSVMAIGS---TSGLVHPSTGYMVARTMALAPAL 382 (503)
Q Consensus 314 ~~~---~~l~~~l~~~~~~~~~i~~~~~~~~p~~~~-~~--~--~~~~v~liGD---Aa~~~~P~~G~G~~~al~~a~~l 382 (503)
++. +.+.++++ ..+....++....+..|+... .+ . ..+-++...+ ..++++- +|..+.+.-.-|..+
T Consensus 294 ~i~~Ll~~~~~~~p-~~l~~~~ii~~waG~RPl~~d~~~~~~~~sr~~~i~~~~~~g~~gli~v-~Ggk~Tt~r~mAe~~ 371 (508)
T PRK12266 294 EIDYLCKVVNRYFK-KQLTPADVVWTYSGVRPLCDDESDSAQAITRDYTLELDDENGGAPLLSV-FGGKITTYRKLAEHA 371 (508)
T ss_pred HHHHHHHHHHHhcC-CCCCHHHEEEEeeeeEeeCCCCCCCcccCCcceEEEecccCCCCCeEEE-EcChHHHHHHHHHHH
Confidence 333 33333332 124445677777888886422 11 1 2333333321 2344443 345577777777777
Q ss_pred HHHHHHHhc
Q 010693 383 ADAIAECLG 391 (503)
Q Consensus 383 A~~l~~~l~ 391 (503)
.+.+.+.+.
T Consensus 372 ~~~~~~~l~ 380 (508)
T PRK12266 372 LEKLAPYLP 380 (508)
T ss_pred HHHHHHhcC
Confidence 777777754
No 69
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.50 E-value=1.2e-13 Score=132.81 Aligned_cols=138 Identities=24% Similarity=0.265 Sum_probs=90.8
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCch----hhhhhccCceEEEecCC
Q 010693 82 DRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLV----DCLDKTWPMTCVFINDH 157 (503)
Q Consensus 82 ~~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~ 157 (503)
+..++||+||||||||+++|+.|++ +|++|+|||+.+..+.....|.. .+....+. +.+. .+... +.
T Consensus 22 ~~~~~DVvIVGgGpAGl~AA~~la~-~G~~V~liEk~~~~Ggg~~~gg~--~~~~~~v~~~~~~~l~-~~gv~---~~-- 92 (257)
T PRK04176 22 DYLEVDVAIVGAGPSGLTAAYYLAK-AGLKVAVFERKLSFGGGMWGGGM--LFNKIVVQEEADEILD-EFGIR---YK-- 92 (257)
T ss_pred HhccCCEEEECccHHHHHHHHHHHh-CCCeEEEEecCCCCCCccccCcc--ccccccchHHHHHHHH-HCCCC---ce--
Confidence 3456999999999999999999999 99999999998654321111110 00111110 0111 01000 00
Q ss_pred cccccCCCccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCC-EE-EEEeC-----------CCcEEEeceEEecC
Q 010693 158 KTKYLDRPYGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEF-ES-SIVCD-----------DGNEIKASLIVDAS 223 (503)
Q Consensus 158 ~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~-~~-~v~~~-----------~g~~i~a~~vI~A~ 223 (503)
.....+..+++..+...|.+++.+.|++++ +++|+++..+++ .+ .+.+. +..+++|++||+|+
T Consensus 93 ---~~~~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~AT 169 (257)
T PRK04176 93 ---EVEDGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDAT 169 (257)
T ss_pred ---eecCcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEe
Confidence 001123347899999999999999999999 899999987554 32 22221 22479999999999
Q ss_pred CCCccccc
Q 010693 224 GFASSFVE 231 (503)
Q Consensus 224 G~~s~vr~ 231 (503)
|+++.+.+
T Consensus 170 G~~a~v~~ 177 (257)
T PRK04176 170 GHDAEVVS 177 (257)
T ss_pred CCCcHHHH
Confidence 99998765
No 70
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.50 E-value=1.6e-13 Score=131.44 Aligned_cols=136 Identities=23% Similarity=0.326 Sum_probs=90.4
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCc----hhhhhhccCceEEEecCCcc
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGL----VDCLDKTWPMTCVFINDHKT 159 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~ 159 (503)
.++||+||||||||+++|+.|++ +|++|+||||++..+.. .|+... .+....+ .+.+. .+. +.+.
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~-~G~~V~vlEk~~~~Ggg-~~~gg~-~~~~~~~~~~~~~~l~-~~g---i~~~---- 88 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAK-NGLKVCVLERSLAFGGG-SWGGGM-LFSKIVVEKPAHEILD-EFG---IRYE---- 88 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCCCCcc-ccCCCc-ceecccccchHHHHHH-HCC---CCee----
Confidence 47999999999999999999999 99999999998765421 111100 0111111 01111 010 0000
Q ss_pred cccCCCccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCC--EE-EEEeC-----------CCcEEEeceEEecCC
Q 010693 160 KYLDRPYGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEF--ES-SIVCD-----------DGNEIKASLIVDASG 224 (503)
Q Consensus 160 ~~~~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~--~~-~v~~~-----------~g~~i~a~~vI~A~G 224 (503)
.....+...++..+.+.|.+++.+.|++++ +++|+++..+++ .+ .|.++ +..+++|++||+|||
T Consensus 89 -~~~~g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG 167 (254)
T TIGR00292 89 -DEGDGYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATG 167 (254)
T ss_pred -eccCceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeec
Confidence 011223235888999999999999999999 999999988766 22 23332 224799999999999
Q ss_pred CCccccc
Q 010693 225 FASSFVE 231 (503)
Q Consensus 225 ~~s~vr~ 231 (503)
+.+.+.+
T Consensus 168 ~~a~v~~ 174 (254)
T TIGR00292 168 HDAEIVA 174 (254)
T ss_pred CCchHHH
Confidence 9887655
No 71
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.49 E-value=6e-12 Score=137.77 Aligned_cols=61 Identities=18% Similarity=0.189 Sum_probs=54.1
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCcc
Q 010693 167 GRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASS 228 (503)
Q Consensus 167 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~ 228 (503)
++++...+...|.+.+.+ |++++ +++|+++..+++.+.|.+.+|..++|+.||.|+|.++.
T Consensus 403 G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 403 GWLCPAELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred CeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCcc
Confidence 357888999999999988 99999 89999999888888888888877899999999999874
No 72
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.48 E-value=1.3e-13 Score=124.51 Aligned_cols=136 Identities=24% Similarity=0.309 Sum_probs=82.6
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCc----hhhhhhccCceEEEecCCcc
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGL----VDCLDKTWPMTCVFINDHKT 159 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~ 159 (503)
.++||+|||||||||+||+.|++ .|++|+|||++...+...-+|... +.+.=+ ...++. ..+...
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~-~g~kV~v~E~~~~~GGg~~~Gg~l--f~~iVVq~~a~~iL~e----lgi~y~---- 84 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAK-AGLKVAVIERKLSPGGGMWGGGML--FNKIVVQEEADEILDE----LGIPYE---- 84 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHH-HTS-EEEEESSSS-BTTTTS-CTT-----EEEETTTHHHHHH----HT---E----
T ss_pred ccCCEEEECCChhHHHHHHHHHH-CCCeEEEEecCCCCCccccccccc--cchhhhhhhHHHHHHh----CCceeE----
Confidence 56999999999999999999999 999999999976654433222211 111111 111111 001001
Q ss_pred cccCCCccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeC-CEEEE-EeC------CC-----cEEEeceEEecCCC
Q 010693 160 KYLDRPYGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQE-FESSI-VCD------DG-----NEIKASLIVDASGF 225 (503)
Q Consensus 160 ~~~~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~-~~~~v-~~~------~g-----~~i~a~~vI~A~G~ 225 (503)
.....+...+...+...|..++.+.|++++ ...|+++...+ +.+.- .++ .| -+++|++||||||+
T Consensus 85 -~~~~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGH 163 (230)
T PF01946_consen 85 -EYGDGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGH 163 (230)
T ss_dssp -E-SSEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---S
T ss_pred -EeCCeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCC
Confidence 111223236889999999999999999999 78999998777 44432 221 12 37999999999999
Q ss_pred Cccccc
Q 010693 226 ASSFVE 231 (503)
Q Consensus 226 ~s~vr~ 231 (503)
.+.+.+
T Consensus 164 da~v~~ 169 (230)
T PF01946_consen 164 DAEVVR 169 (230)
T ss_dssp SSSSTS
T ss_pred chHHHH
Confidence 987654
No 73
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.47 E-value=8.1e-13 Score=138.89 Aligned_cols=142 Identities=21% Similarity=0.228 Sum_probs=96.8
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCC-CCC-C-C------cccchhHhhhhcCc--hhhhhhccCceEE
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPL-STW-P-N------NYGVWVDEFEDIGL--VDCLDKTWPMTCV 152 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~-~~~-~-~------~~g~~~~~l~~~~~--~~~~~~~~~~~~~ 152 (503)
..|||+|||||+||+.||+++|+ .|.+|+++|+++. .+. + + ..|.+..+++.+|- ....+..--...+
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR-~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ 81 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAAR-MGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRM 81 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHH-cCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceee
Confidence 46999999999999999999999 9999999998742 221 1 0 02334555555542 2222211101111
Q ss_pred EecCCcccccCCCccccCHHHHHHHHHHHHHh-CCcEEEEeEEEEEEEeCCEE-EEEeCCCcEEEeceEEecCCCCc
Q 010693 153 FINDHKTKYLDRPYGRVSRNILKTKLLENCVS-NGVKFHKAKVWHVNHQEFES-SIVCDDGNEIKASLIVDASGFAS 227 (503)
Q Consensus 153 ~~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~-~gv~~~~~~v~~i~~~~~~~-~v~~~~g~~i~a~~vI~A~G~~s 227 (503)
...........+.+.+++..+.+.+.+.+.+ .|+++++++|+++..+++.+ .|.+.+|..+.|+.||+|+|..+
T Consensus 82 -ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 82 -LNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTFL 157 (618)
T ss_pred -cccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcch
Confidence 1111111222344568999999999999876 48998888899998777655 47788899999999999999654
No 74
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.47 E-value=2.3e-12 Score=135.14 Aligned_cols=59 Identities=19% Similarity=0.197 Sum_probs=50.1
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCc
Q 010693 167 GRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFAS 227 (503)
Q Consensus 167 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s 227 (503)
++++..++...|.+.+++.|++++ +++|++++. ++.+.|.+.+| +++|+.||.|+|.++
T Consensus 178 g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s 237 (460)
T TIGR03329 178 ASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWM 237 (460)
T ss_pred eEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEcccccc
Confidence 357888999999999999999999 899999975 44566777766 699999999999775
No 75
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.46 E-value=3e-11 Score=123.72 Aligned_cols=66 Identities=18% Similarity=0.181 Sum_probs=54.5
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCC-ccccccc
Q 010693 167 GRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFA-SSFVEYD 233 (503)
Q Consensus 167 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~-s~vr~~~ 233 (503)
+.++...+.+.|.+.+.+.|++++ +++|+++..+++.+.|.+.++ ++.||.||.|+|.+ +.+++..
T Consensus 140 g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~~~l~~~~ 207 (380)
T TIGR01377 140 GVLYAEKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWTSKLLSPL 207 (380)
T ss_pred cEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcchHHHhhhc
Confidence 347788899999999989999999 899999998888888877766 79999999999976 5555433
No 76
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.44 E-value=1.4e-11 Score=127.83 Aligned_cols=60 Identities=20% Similarity=0.122 Sum_probs=49.5
Q ss_pred ccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEE-EEeCCCcEEEeceEEecCCCCcc
Q 010693 168 RVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESS-IVCDDGNEIKASLIVDASGFASS 228 (503)
Q Consensus 168 ~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~-v~~~~g~~i~a~~vI~A~G~~s~ 228 (503)
.++...+...|.+.+.+.|++++ +++|++++.+++.+. |.+++ .+++||.||.|+|.++.
T Consensus 197 ~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~-~~~~a~~VV~a~G~~~~ 258 (416)
T PRK00711 197 TGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGG-GVITADAYVVALGSYST 258 (416)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCC-cEEeCCEEEECCCcchH
Confidence 35667888899999999999999 899999988777654 55554 47999999999998874
No 77
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.44 E-value=2.4e-11 Score=125.65 Aligned_cols=65 Identities=12% Similarity=0.031 Sum_probs=47.6
Q ss_pred ccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEe-CCE-EEEEeCCCcEEEeceEEecCC-CCccccccc
Q 010693 168 RVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQ-EFE-SSIVCDDGNEIKASLIVDASG-FASSFVEYD 233 (503)
Q Consensus 168 ~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~-~~~-~~v~~~~g~~i~a~~vI~A~G-~~s~vr~~~ 233 (503)
.++...+...|.+.+.+.|++++ +++|++++.. ++. +.|.+++| ++.|+.||.|.| .++.+.+..
T Consensus 179 ~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~ 247 (407)
T TIGR01373 179 TARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMA 247 (407)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHc
Confidence 46677788888999999999999 8999999754 344 44677777 689987766555 555555533
No 78
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.43 E-value=6.8e-13 Score=119.01 Aligned_cols=139 Identities=24% Similarity=0.304 Sum_probs=90.3
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHh--hhhcCchhhhhhccCceEEEecCCccc
Q 010693 83 RIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDE--FEDIGLVDCLDKTWPMTCVFINDHKTK 160 (503)
Q Consensus 83 ~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (503)
....||+||||||+||+||+.||+ +|++|+||||+-..+. |.|... |.++=+++-....-....+...
T Consensus 28 ~~esDViIVGaGPsGLtAAyyLAk-~g~kV~i~E~~ls~GG----G~w~GGmlf~~iVv~~~a~~iL~e~gI~ye----- 97 (262)
T COG1635 28 YLESDVIIVGAGPSGLTAAYYLAK-AGLKVAIFERKLSFGG----GIWGGGMLFNKIVVREEADEILDEFGIRYE----- 97 (262)
T ss_pred hhhccEEEECcCcchHHHHHHHHh-CCceEEEEEeecccCC----cccccccccceeeecchHHHHHHHhCCcce-----
Confidence 346899999999999999999999 9999999998654332 222211 1111111000000000000000
Q ss_pred ccCCCccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCC-EEE-EEe-----------CCCcEEEeceEEecCCCC
Q 010693 161 YLDRPYGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEF-ESS-IVC-----------DDGNEIKASLIVDASGFA 226 (503)
Q Consensus 161 ~~~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~-~~~-v~~-----------~~g~~i~a~~vI~A~G~~ 226 (503)
.....+...+...+...|..++.+.|++++ .+.|+++...++ ++. |.+ -|--+++|++||||||+-
T Consensus 98 ~~e~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHd 177 (262)
T COG1635 98 EEEDGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHD 177 (262)
T ss_pred ecCCceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCc
Confidence 111223336888999999999999999999 889999987776 332 221 233479999999999998
Q ss_pred ccccc
Q 010693 227 SSFVE 231 (503)
Q Consensus 227 s~vr~ 231 (503)
..+.+
T Consensus 178 a~v~~ 182 (262)
T COG1635 178 AEVVS 182 (262)
T ss_pred hHHHH
Confidence 86644
No 79
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.43 E-value=2e-11 Score=126.28 Aligned_cols=60 Identities=17% Similarity=0.216 Sum_probs=49.5
Q ss_pred cCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCC-----cEEEeceEEecCCCCcc
Q 010693 169 VSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDG-----NEIKASLIVDASGFASS 228 (503)
Q Consensus 169 v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g-----~~i~a~~vI~A~G~~s~ 228 (503)
++-..+...|.+.+.+.|++++ +++|++++.+++.+.+.+.++ .+++|+.||.|+|.++.
T Consensus 194 ~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~ 259 (410)
T PRK12409 194 GDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSR 259 (410)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcChH
Confidence 5567888889999999999999 899999998777776655432 37999999999998863
No 80
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.42 E-value=3.1e-11 Score=124.21 Aligned_cols=84 Identities=14% Similarity=0.185 Sum_probs=63.5
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCc-ccccccCCC-CCcccee
Q 010693 167 GRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFAS-SFVEYDKPR-NHGYQIA 243 (503)
Q Consensus 167 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s-~vr~~~~~~-~~~~~~~ 243 (503)
+.++...+.+.|.+.+.+.|++++ +++|+++..+++.+.|.+.+| ++.||.||.|+|.++ .+.+..+.. .......
T Consensus 144 g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~g~~~~~~v~p~ 222 (393)
T PRK11728 144 GIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMSDRLAKMAGLEPDFRIVPF 222 (393)
T ss_pred eEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcchHHHHHHhCCCCCCceEEe
Confidence 457889999999999999999999 899999988877788888766 799999999999987 344433322 2233344
Q ss_pred EEEEEEec
Q 010693 244 HGILAEVE 251 (503)
Q Consensus 244 ~g~~~~~~ 251 (503)
.|....+.
T Consensus 223 rGq~~~~~ 230 (393)
T PRK11728 223 RGEYYRLA 230 (393)
T ss_pred eeEEEEec
Confidence 56655554
No 81
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.37 E-value=5.6e-11 Score=121.92 Aligned_cols=60 Identities=20% Similarity=0.220 Sum_probs=49.3
Q ss_pred ccCHHHHHHHHHHHHHhCCc-EEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCcc
Q 010693 168 RVSRNILKTKLLENCVSNGV-KFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASS 228 (503)
Q Consensus 168 ~v~r~~l~~~L~~~~~~~gv-~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~ 228 (503)
.++...+.+.|.+.+.+.|+ .+. ++.+..++.+...+.|.+.+|. +.|+.||.|+|.++.
T Consensus 152 ~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~~ 213 (387)
T COG0665 152 HLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAG 213 (387)
T ss_pred cCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHHH
Confidence 47788999999999999994 555 7888888874256778888776 999999999998864
No 82
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.35 E-value=6.2e-10 Score=120.40 Aligned_cols=202 Identities=13% Similarity=0.133 Sum_probs=115.0
Q ss_pred ccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEe--CCEE-EEEe---CCCc--EEEeceEEecCCCCcc-cccccCC-C
Q 010693 168 RVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQ--EFES-SIVC---DDGN--EIKASLIVDASGFASS-FVEYDKP-R 236 (503)
Q Consensus 168 ~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~--~~~~-~v~~---~~g~--~i~a~~vI~A~G~~s~-vr~~~~~-~ 236 (503)
+++...+...|.+.+.+.|++++ +++|+++..+ ++.+ .|.+ .+|+ ++.|+.||.|+|.++. +++..+. .
T Consensus 228 ~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~g~~~ 307 (627)
T PLN02464 228 QMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMADGKA 307 (627)
T ss_pred EEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhccCcC
Confidence 47888999999999999999999 8899999876 3433 3333 2343 6899999999998874 5544432 2
Q ss_pred CCccceeEEEEEEecCCCCCCCce-EEeeccCCCCCCCcccccCCCCCCeEEEEeecCCCeEEEecccccC----CCCCC
Q 010693 237 NHGYQIAHGILAEVESHPFDLDKM-VLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNLVFLEETSLVS----RPVLS 311 (503)
Q Consensus 237 ~~~~~~~~g~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~~v~~~~~~~----~~~~~ 311 (503)
........|....++. .+.+... +.+ .. ..+| ..++++|. .+.++++.|.... .+..+
T Consensus 308 ~~~I~p~kG~hlvl~~-~~~~~~~~~i~-~~----------~~dg----r~~~~~P~-~g~~liGtTd~~~~~~~~~~~t 370 (627)
T PLN02464 308 KPMICPSSGVHIVLPD-YYSPEGMGLIV-PK----------TKDG----RVVFMLPW-LGRTVAGTTDSKTPITMLPEPH 370 (627)
T ss_pred CCceEeeeeEEEeccc-ccCCCCceEEe-cC----------CCCC----CEEEEEec-CCcEEEecCCCCCCCCCCCCCC
Confidence 2335667787666542 2222221 111 10 1133 35889999 6667777655321 12233
Q ss_pred HHHH---HHHHHHHHhhcCCccceEeecceecccCCC-CCCC-----CCCCEEEeccCCCCcCCcccHHHHHHHHhHHHH
Q 010693 312 YKEV---KRRMAARLRHMGIRVKRVIEDEKCLIPMGG-PLPV-----IPQSVMAIGSTSGLVHPSTGYMVARTMALAPAL 382 (503)
Q Consensus 312 ~~~~---~~~l~~~l~~~~~~~~~i~~~~~~~~p~~~-~~~~-----~~~~v~liGDAa~~~~P~~G~G~~~al~~a~~l 382 (503)
.+++ .+....+++ ..+....+.....+..|+.. ..+. ..+.++.. + .|-+--.+|.=+.+.-.-|..+
T Consensus 371 ~~ei~~Ll~~a~~~~~-~~l~~~~v~~~waG~RPl~~d~~~~~~~~~sr~~~i~~-~-~~gli~i~GGk~Tt~R~mAe~~ 447 (627)
T PLN02464 371 EDEIQFILDAISDYLN-VKVRRSDVLSAWSGIRPLAVDPSAKSTESISRDHVVCE-E-PDGLVTITGGKWTTYRSMAEDA 447 (627)
T ss_pred HHHHHHHHHHHHHhhC-CCCChhhEEEEEEeEEeeccCCCCCcccccCCceEEEe-c-CCCeEEEECChHHHHHHHHHHH
Confidence 3433 333334442 12444566777778888652 1111 23344432 2 2323333444466555556666
Q ss_pred HHHHHHH
Q 010693 383 ADAIAEC 389 (503)
Q Consensus 383 A~~l~~~ 389 (503)
.+.+.+.
T Consensus 448 ~d~~~~~ 454 (627)
T PLN02464 448 VDAAIKS 454 (627)
T ss_pred HHHHHHh
Confidence 6666553
No 83
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.33 E-value=3.3e-10 Score=120.99 Aligned_cols=202 Identities=17% Similarity=0.222 Sum_probs=109.9
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEE-EEeC---CC--cEEEeceEEecCCCCcc-cccccCCCCC
Q 010693 167 GRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESS-IVCD---DG--NEIKASLIVDASGFASS-FVEYDKPRNH 238 (503)
Q Consensus 167 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~-v~~~---~g--~~i~a~~vI~A~G~~s~-vr~~~~~~~~ 238 (503)
++++...+...+.+.+.++|++++ +++|+++..+++.+. |++. +| .+++|+.||.|+|.++. +.++.+. ..
T Consensus 144 g~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~g~-~~ 222 (546)
T PRK11101 144 GTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYADL-RI 222 (546)
T ss_pred cEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhcCC-CC
Confidence 458888999999999999999999 899999988776543 4432 23 37999999999998873 4443332 22
Q ss_pred ccceeEEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCCeEEEecccccC---C---CCCCH
Q 010693 239 GYQIAHGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNLVFLEETSLVS---R---PVLSY 312 (503)
Q Consensus 239 ~~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~~v~~~~~~~---~---~~~~~ 312 (503)
......|....++. ... ..++. ....+ .++ . ++.| .++.++++.|.... . ...+.
T Consensus 223 ~i~p~kG~~lv~~~-~~~--~~vi~--~~~~~-------~~~----~--~~vp-~~~~~liGtT~~~~~~~~~~~~~~t~ 283 (546)
T PRK11101 223 RMFPAKGSLLIMDH-RIN--NHVIN--RCRKP-------ADA----D--ILVP-GDTISLIGTTSTRIDYDQIDDNRVTA 283 (546)
T ss_pred ceeecceEEEEECC-ccC--ceeEe--ccCCC-------CCC----C--EEEe-cCCEEEEeeCCCCccCCCcCCCCCCH
Confidence 23334455444432 111 11111 10000 011 1 2446 34566777654321 1 22344
Q ss_pred HHHHHHHHHHHhhc--CCccceEeecceecccCCCC--CC---CCCCCEEEeccC-----CCCcCCcccHHHHHHHHhHH
Q 010693 313 KEVKRRMAARLRHM--GIRVKRVIEDEKCLIPMGGP--LP---VIPQSVMAIGST-----SGLVHPSTGYMVARTMALAP 380 (503)
Q Consensus 313 ~~~~~~l~~~l~~~--~~~~~~i~~~~~~~~p~~~~--~~---~~~~~v~liGDA-----a~~~~P~~G~G~~~al~~a~ 380 (503)
+++...+ +....+ .+...+++....++.|+-.. .+ ......++++++ .+++.-.+| .+...-..|.
T Consensus 284 ~~i~~Ll-~~~~~l~P~l~~~~i~~~~aGvRPl~~~~~~~~~~~~sR~~~ii~~~~~~g~~gli~i~GG-kltt~r~~Ae 361 (546)
T PRK11101 284 EEVDILL-REGEKLAPVMAKTRILRAYAGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGG-KLMTYRLMAE 361 (546)
T ss_pred HHHHHHH-HHHHHhCCCCCccCEEEEEEEeccCCCCCCCCcccccCCCeEEeecccccCCCCeEEEECC-hHHHHHHHHH
Confidence 4443322 222222 23445577777888886321 11 122235566643 345554444 3555545666
Q ss_pred HHHHHHHHHh
Q 010693 381 ALADAIAECL 390 (503)
Q Consensus 381 ~lA~~l~~~l 390 (503)
.+++.+.+.+
T Consensus 362 ~v~d~v~~~l 371 (546)
T PRK11101 362 WATDAVCRKL 371 (546)
T ss_pred HHHHHHHHhc
Confidence 6666766664
No 84
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.28 E-value=2.4e-10 Score=108.95 Aligned_cols=144 Identities=22% Similarity=0.273 Sum_probs=95.8
Q ss_pred CCCCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCc-----------c-------------cchhHh---
Q 010693 81 SDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNN-----------Y-------------GVWVDE--- 133 (503)
Q Consensus 81 ~~~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~-----------~-------------g~~~~~--- 133 (503)
+.....||+|||||+-|+++|+.|++ +|.+++++|+-+.+..... | ..|...
T Consensus 3 ~~~~~~~viiVGAGVfG~stAyeLaK-~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~ 81 (399)
T KOG2820|consen 3 EMVKSRDVIIVGAGVFGLSTAYELAK-RGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEE 81 (399)
T ss_pred ccccceeEEEEcccccchHHHHHHHh-cCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhh
Confidence 34567999999999999999999999 9999999998765422111 0 001100
Q ss_pred ------------------------h----hhcCch------hhhhhccCceEEEecCCcccccCCCccccCHHHHHHHHH
Q 010693 134 ------------------------F----EDIGLV------DCLDKTWPMTCVFINDHKTKYLDRPYGRVSRNILKTKLL 179 (503)
Q Consensus 134 ------------------------l----~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~ 179 (503)
+ ..-++. +.+...+++ .+.+++......+..-|+++..+-.+.+.
T Consensus 82 ~g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~-~~~l~d~~~G~~n~~gGvi~a~kslk~~~ 160 (399)
T KOG2820|consen 82 SGVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPS-NIPLPDGWQGVVNESGGVINAAKSLKALQ 160 (399)
T ss_pred hceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCC-CccCCcchhhcccccccEeeHHHHHHHHH
Confidence 0 000000 001111221 22223332223333444577888899999
Q ss_pred HHHHhCCcEEE-EeEEEEEEEe---CCEEEEEeCCCcEEEeceEEecCCCC
Q 010693 180 ENCVSNGVKFH-KAKVWHVNHQ---EFESSIVCDDGNEIKASLIVDASGFA 226 (503)
Q Consensus 180 ~~~~~~gv~~~-~~~v~~i~~~---~~~~~v~~~~g~~i~a~~vI~A~G~~ 226 (503)
..+++.|+.++ +.+|+.++.. +..+.|.+.+|..+.|+-+|.|.|.+
T Consensus 161 ~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaW 211 (399)
T KOG2820|consen 161 DKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAW 211 (399)
T ss_pred HHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHH
Confidence 99999999999 8888877643 34788999999999999999999976
No 85
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.28 E-value=7.4e-12 Score=116.41 Aligned_cols=133 Identities=22% Similarity=0.239 Sum_probs=78.8
Q ss_pred EEECCCHHHHHHHHHHHccCCCc-EEEEcCCCCCCCCCcccchhHhhhhcCc-hhhhhhccCceEEEecCCccc---ccC
Q 010693 89 IIIGTGPAGLRLAEQVSSRHSVK-VCCVDPSPLSTWPNNYGVWVDEFEDIGL-VDCLDKTWPMTCVFINDHKTK---YLD 163 (503)
Q Consensus 89 vIVGgGpaGl~~A~~La~~~G~~-V~viE~~~~~~~~~~~g~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~ 163 (503)
+||||||+||++|..|.+ .|++ |+|||+++..+ |.|...-....+ ............ .+...... ...
T Consensus 1 ~IIGaG~aGl~~a~~l~~-~g~~~v~v~e~~~~~G-----g~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 73 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLE-RGIDPVVVLERNDRPG-----GVWRRYYSYTRLHSPSFFSSDFGLP-DFESFSFDDSPEWR 73 (203)
T ss_dssp EEE--SHHHHHHHHHHHH-TT---EEEEESSSSST-----THHHCH-TTTT-BSSSCCTGGSS---CCCHSCHHHHHHHH
T ss_pred CEECcCHHHHHHHHHHHh-CCCCcEEEEeCCCCCC-----CeeEEeCCCCccccCccccccccCC-cccccccccCCCCC
Confidence 799999999999999999 9999 99999875432 234321001000 000000000000 00000000 000
Q ss_pred CCccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCcc
Q 010693 164 RPYGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASS 228 (503)
Q Consensus 164 ~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~ 228 (503)
.+........+.++|.+.+++.+++++ +++|+++..+++++.|++.++++++|+.||.|+|..+.
T Consensus 74 ~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~ 139 (203)
T PF13738_consen 74 WPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSH 139 (203)
T ss_dssp HSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCS
T ss_pred CCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCC
Confidence 112236688889999999999999998 99999999999899999999988999999999997653
No 86
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.27 E-value=8.9e-11 Score=123.44 Aligned_cols=140 Identities=16% Similarity=0.220 Sum_probs=96.8
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCC-CCC--------cccchhHhhhhcC--chhhhhhccCceEEEe
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLST-WPN--------NYGVWVDEFEDIG--LVDCLDKTWPMTCVFI 154 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~-~~~--------~~g~~~~~l~~~~--~~~~~~~~~~~~~~~~ 154 (503)
|||+|||||+||+.+|.++++ .|.+|+|+|+++... ... ..|.|..+++.+| +..+.+...-......
T Consensus 1 yDViVIGaG~AGl~aA~ala~-~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln 79 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAAR-MGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLN 79 (617)
T ss_pred CeEEEECccHHHHHHHHHHHH-CCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecc
Confidence 799999999999999999999 999999999874321 110 1334555566654 2223222211111111
Q ss_pred cCCcccccCCCccccCHHHHHHHHHHHHHhC-CcEEEEeEEEEEEEe-C-CEEEEEeCCCcEEEeceEEecCCCCc
Q 010693 155 NDHKTKYLDRPYGRVSRNILKTKLLENCVSN-GVKFHKAKVWHVNHQ-E-FESSIVCDDGNEIKASLIVDASGFAS 227 (503)
Q Consensus 155 ~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~-gv~~~~~~v~~i~~~-~-~~~~v~~~~g~~i~a~~vI~A~G~~s 227 (503)
..... ....+.+.+|+..+...+.+.+++. |+++++.+|+++..+ + ....|.+.+|..+.|+.||+|+|...
T Consensus 80 ~skgp-AV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 80 SSKGP-AVRATRAQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred cCCCC-cccccHHhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 11111 2233445799999999999999885 788887788888765 3 35567888888999999999999884
No 87
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.27 E-value=2.5e-09 Score=110.59 Aligned_cols=205 Identities=18% Similarity=0.255 Sum_probs=125.2
Q ss_pred cCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCC---Cc--EEEeceEEecCCCCc-ccccccCCCC---C
Q 010693 169 VSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDD---GN--EIKASLIVDASGFAS-SFVEYDKPRN---H 238 (503)
Q Consensus 169 v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~---g~--~i~a~~vI~A~G~~s-~vr~~~~~~~---~ 238 (503)
++-..|.-.....+.+.|.+++ .++|+++..+++.+.|.+.| |+ +++|+.||.|+|.++ .+++...... .
T Consensus 161 vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~~~~~~~~~ 240 (532)
T COG0578 161 VDDARLVAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMAGLEQSPHI 240 (532)
T ss_pred echHHHHHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhhcccCCCCc
Confidence 6677888888888999999999 89999999998855666654 33 699999999999987 3455442222 2
Q ss_pred ccceeEEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCCeEEEeccccc-----CCCCCCHH
Q 010693 239 GYQIAHGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNLVFLEETSLV-----SRPVLSYK 313 (503)
Q Consensus 239 ~~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~~v~~~~~~-----~~~~~~~~ 313 (503)
......|.+.-++. -++....++.... .++ ....++|..+.. +++.|+.. ..+..+.+
T Consensus 241 ~vr~skGsHlVv~~-~~~~~~a~~~~~~-----------~d~----r~~f~iP~~~~~-liGTTD~~~~~~~~~~~~~~e 303 (532)
T COG0578 241 GVRPSKGSHLVVDK-KFPINQAVINRCR-----------KDG----RIVFAIPYEGKT-LIGTTDTDYDGDPEDPRITEE 303 (532)
T ss_pred cceeccceEEEecc-cCCCCceEEeecC-----------CCC----ceEEEecCCCCE-EeeccccccCCCcccCCCCHH
Confidence 45556677766665 4555555553222 122 458889998887 55555432 22344555
Q ss_pred HHHHHHHHHH--hhcCCccceEeecceecccCCCCC---CC-CCCCEEEeccC--CCCcCCcccHHHHHHHHhHHHHHHH
Q 010693 314 EVKRRMAARL--RHMGIRVKRVIEDEKCLIPMGGPL---PV-IPQSVMAIGST--SGLVHPSTGYMVARTMALAPALADA 385 (503)
Q Consensus 314 ~~~~~l~~~l--~~~~~~~~~i~~~~~~~~p~~~~~---~~-~~~~v~liGDA--a~~~~P~~G~G~~~al~~a~~lA~~ 385 (503)
++.-.+.+.- ....+...+|+....++.|+-..- +. ..-..++.-++ ++.+.-+ |.=+.+-=..|..+.+.
T Consensus 304 Eidyll~~~~~~~~~~l~~~dI~~syaGVRPL~~~~~~~~~~isR~~~l~~~~~~~glltv~-GGKlTTyR~maE~a~d~ 382 (532)
T COG0578 304 EIDYLLDAVNRYLAPPLTREDILSTYAGVRPLVDDGDDDTSAISRDHVLFDHAELAGLLTVA-GGKLTTYRKMAEDALDA 382 (532)
T ss_pred HHHHHHHHHHhhhhccCChhheeeeeeeeeeccCCCCCchhhccCceEEEecCCCCCeEEEe-cchhHHhHHHHHHHHHH
Confidence 5443332222 223455567788888899974311 21 22233333333 4444333 33355445556667777
Q ss_pred HHHHhc
Q 010693 386 IAECLG 391 (503)
Q Consensus 386 l~~~l~ 391 (503)
+.+.+.
T Consensus 383 v~~~lg 388 (532)
T COG0578 383 VCEKLG 388 (532)
T ss_pred HHHhcC
Confidence 777665
No 88
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.26 E-value=8.8e-11 Score=117.54 Aligned_cols=135 Identities=21% Similarity=0.249 Sum_probs=87.2
Q ss_pred cEEEECCCHHHHHHHHHHHccCCCcEEEEcCC-CCCCCCCcc---------cchhHhhhhcCchhhhhhccCceEEEe--
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPS-PLSTWPNNY---------GVWVDEFEDIGLVDCLDKTWPMTCVFI-- 154 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~-~~~~~~~~~---------g~~~~~l~~~~~~~~~~~~~~~~~~~~-- 154 (503)
||+|||||.||+.||+++|+ .|.+|+++... +.... -.| |....+++.+|- .+........+++
T Consensus 1 DViVVGgG~AG~eAA~aaAr-~G~~V~Lit~~~d~i~~-~~Cnpsigg~~kg~L~~Eidalgg--~m~~~aD~~~i~~~~ 76 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAAR-MGAKVLLITHNTDTIGE-MSCNPSIGGIAKGHLVREIDALGG--LMGRAADETGIHFRM 76 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHH-TT--EEEEES-GGGTT---SSSSEEESTTHHHHHHHHHHTT---SHHHHHHHHEEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHH-CCCCEEEEeeccccccc-ccchhhhccccccchhHHHhhhhh--HHHHHHhHhhhhhhc
Confidence 89999999999999999999 99999999322 22211 111 123334555541 1111222222322
Q ss_pred cCCc-ccccCCCccccCHHHHHHHHHHHHHh-CCcEEEEeEEEEEEEeCCE-EEEEeCCCcEEEeceEEecCCC
Q 010693 155 NDHK-TKYLDRPYGRVSRNILKTKLLENCVS-NGVKFHKAKVWHVNHQEFE-SSIVCDDGNEIKASLIVDASGF 225 (503)
Q Consensus 155 ~~~~-~~~~~~~~~~v~r~~l~~~L~~~~~~-~gv~~~~~~v~~i~~~~~~-~~v~~~~g~~i~a~~vI~A~G~ 225 (503)
.+.. ......+...+||..+.+.+.+.+++ .++++++.+|+++..+++. ..|.+.+|.++.|+.||+|+|.
T Consensus 77 lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 77 LNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp ESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred ccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 2221 11122233359999999999999988 7899999999999988774 4678888999999999999998
No 89
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=2.3e-10 Score=112.17 Aligned_cols=118 Identities=23% Similarity=0.224 Sum_probs=86.5
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCc-EEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCccccc
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVK-VCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYL 162 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~-V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (503)
..|||+|||||||||+||+.+++ +|++ ++|+|+....+.+..+. ... ..
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r-~~l~~~li~~~~~~gg~~~~~~------------------------~ve-----ny 51 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAAR-AGLKVVLILEGGEPGGQLTKTT------------------------DVE-----NY 51 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHH-cCCCcEEEEecCCcCCccccce------------------------eec-----CC
Confidence 57999999999999999999999 9999 77777543221111100 000 00
Q ss_pred CCCccccCHHHHHHHHHHHHHhCCcEEEEeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCcccccc
Q 010693 163 DRPYGRVSRNILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSFVEY 232 (503)
Q Consensus 163 ~~~~~~v~r~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~vr~~ 232 (503)
..-.+.+.-..+.+.+.+++...|+++....|..++..++.+.|.+++|. ++|+.||.|+|...+..+.
T Consensus 52 pg~~~~~~g~~L~~~~~~~a~~~~~~~~~~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~~~ 120 (305)
T COG0492 52 PGFPGGILGPELMEQMKEQAEKFGVEIVEDEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKLGV 120 (305)
T ss_pred CCCccCCchHHHHHHHHHHHhhcCeEEEEEEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCCCC
Confidence 00111245577888899999899999988888888877668888998887 9999999999998865443
No 90
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.21 E-value=3.2e-09 Score=108.16 Aligned_cols=56 Identities=21% Similarity=0.296 Sum_probs=45.9
Q ss_pred ccCHHHHHHHHHHHHHhC-CcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCcc
Q 010693 168 RVSRNILKTKLLENCVSN-GVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASS 228 (503)
Q Consensus 168 ~v~r~~l~~~L~~~~~~~-gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~ 228 (503)
+++...+...|.+.+.+. |++++ +++|++++.. .|.+.+| +++|+.||.|+|.++.
T Consensus 141 ~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~----~v~t~~g-~i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 141 RVEPREAIPALAAYLAEQHGVEFHWNTAVTSVETG----TVRTSRG-DVHADQVFVCPGADFE 198 (365)
T ss_pred eECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEecC----eEEeCCC-cEEeCEEEECCCCChh
Confidence 478888999999888775 99999 8999999642 5667766 4789999999998763
No 91
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.20 E-value=3.4e-10 Score=114.67 Aligned_cols=169 Identities=21% Similarity=0.285 Sum_probs=105.5
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHccCC--CcEEEEcCCCCCCCCC---cc-----cc------------------hhHhh
Q 010693 83 RIRYDVIIIGTGPAGLRLAEQVSSRHS--VKVCCVDPSPLSTWPN---NY-----GV------------------WVDEF 134 (503)
Q Consensus 83 ~~~~DvvIVGgGpaGl~~A~~La~~~G--~~V~viE~~~~~~~~~---~~-----g~------------------~~~~l 134 (503)
+.+|||+|||||+.|+++|++|++ ++ ++|+|+||........ +- |. |.+..
T Consensus 1 ~~~~DvvIIGgGI~G~a~a~~Ls~-~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~ 79 (429)
T COG0579 1 MMDYDVVIIGGGIMGAATAYELSE-YEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAIC 79 (429)
T ss_pred CCceeEEEECCcHHHHHHHHHHHH-hCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHH
Confidence 357999999999999999999999 88 9999999986653211 10 10 00001
Q ss_pred hhcCc--hh--------------hhhhcc-----Cce-EEEecCCcc--------------cccCCCccccCHHHHHHHH
Q 010693 135 EDIGL--VD--------------CLDKTW-----PMT-CVFINDHKT--------------KYLDRPYGRVSRNILKTKL 178 (503)
Q Consensus 135 ~~~~~--~~--------------~~~~~~-----~~~-~~~~~~~~~--------------~~~~~~~~~v~r~~l~~~L 178 (503)
+++++ .. .+...| .+. .++..+... .......+.|+...+...|
T Consensus 80 kq~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l 159 (429)
T COG0579 80 KQLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRAL 159 (429)
T ss_pred HHhCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHH
Confidence 11110 00 000000 000 111111110 0011233347889999999
Q ss_pred HHHHHhCCcEEE-EeEEEEEEEeCC-EEEEEeCCCcE-EEeceEEecCCCCc-ccccccCCCC-CccceeEEEEEEecC
Q 010693 179 LENCVSNGVKFH-KAKVWHVNHQEF-ESSIVCDDGNE-IKASLIVDASGFAS-SFVEYDKPRN-HGYQIAHGILAEVES 252 (503)
Q Consensus 179 ~~~~~~~gv~~~-~~~v~~i~~~~~-~~~v~~~~g~~-i~a~~vI~A~G~~s-~vr~~~~~~~-~~~~~~~g~~~~~~~ 252 (503)
.+.+.++|++++ +++|++++..++ ...+.+.+|++ ++|+.||.|.|..| .+.+..+... ...-...|....++.
T Consensus 160 ~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~~~~~~~~P~~G~y~~~~~ 238 (429)
T COG0579 160 AEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIPEDFKIFPVRGEYLVLDN 238 (429)
T ss_pred HHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHhCCCcccccCccceEEEEEcc
Confidence 999999999999 999999999888 57777888876 99999999999665 5665544433 222223355555443
No 92
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.20 E-value=4.2e-10 Score=111.10 Aligned_cols=114 Identities=26% Similarity=0.330 Sum_probs=83.7
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
|||+|||||+||+++|..|++ .|++|+|||+.+.. |.+... ..+ ..++.. +
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~-~g~~v~lie~~~~g------g~~~~~-------~~~--------~~~~~~-------~ 51 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAAR-ANLKTLIIEGMEPG------GQLTTT-------TEV--------ENYPGF-------P 51 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHH-CCCCEEEEeccCCC------cceeec-------ccc--------cccCCC-------C
Confidence 799999999999999999999 99999999976521 111000 000 000000 0
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEEEeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCccc
Q 010693 166 YGRVSRNILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSF 229 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~v 229 (503)
..+....+...+.+.+.+.|++++.++|++++.+++.+.|.+.+|.++++|.||.|+|.....
T Consensus 52 -~~~~~~~~~~~l~~~~~~~gv~~~~~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~ 114 (300)
T TIGR01292 52 -EGISGPELMEKMKEQAVKFGAEIIYEEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARK 114 (300)
T ss_pred -CCCChHHHHHHHHHHHHHcCCeEEEEEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCccc
Confidence 013345677788888888899988789999998877888888888899999999999987643
No 93
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.15 E-value=4.1e-10 Score=117.39 Aligned_cols=139 Identities=17% Similarity=0.196 Sum_probs=89.3
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHh----hhhcCch-----------hhhhhcc
Q 010693 83 RIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDE----FEDIGLV-----------DCLDKTW 147 (503)
Q Consensus 83 ~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~----l~~~~~~-----------~~~~~~~ 147 (503)
....+|+|||||||||++|..|.+ .|++|+|||+++..+ |.|.-. -+.+++. +.+....
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~-~G~~v~vfE~~~~vG-----G~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~ 81 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRR-EGHTVVVFEREKQVG-----GLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNL 81 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHh-cCCeEEEEecCCCCc-----ceeecCCCcCCCccccCCCCcccchhhhhhhhccC
Confidence 345899999999999999999999 999999999987654 222110 0011110 0000011
Q ss_pred CceEEEecCCc-ccc----cCCCccccCHHHHHHHHHHHHHhCCcE--EE-EeEEEEEEEeCCEEEEEeCCC--c--EEE
Q 010693 148 PMTCVFINDHK-TKY----LDRPYGRVSRNILKTKLLENCVSNGVK--FH-KAKVWHVNHQEFESSIVCDDG--N--EIK 215 (503)
Q Consensus 148 ~~~~~~~~~~~-~~~----~~~~~~~v~r~~l~~~L~~~~~~~gv~--~~-~~~v~~i~~~~~~~~v~~~~g--~--~i~ 215 (503)
+...+.+.+.. ... ......+.....+.++|.+.+...|+. ++ +++|++++..++++.|++.++ . +..
T Consensus 82 p~~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~ 161 (461)
T PLN02172 82 PRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEI 161 (461)
T ss_pred CHhhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEE
Confidence 11111111110 000 001111356788999999999998887 66 899999998888898887643 2 467
Q ss_pred eceEEecCCCCc
Q 010693 216 ASLIVDASGFAS 227 (503)
Q Consensus 216 a~~vI~A~G~~s 227 (503)
+|.||.|+|+.+
T Consensus 162 ~d~VIvAtG~~~ 173 (461)
T PLN02172 162 FDAVVVCNGHYT 173 (461)
T ss_pred cCEEEEeccCCC
Confidence 999999999765
No 94
>PRK07233 hypothetical protein; Provisional
Probab=99.14 E-value=1.8e-08 Score=104.89 Aligned_cols=54 Identities=19% Similarity=0.068 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCC
Q 010693 173 ILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFA 226 (503)
Q Consensus 173 ~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~ 226 (503)
.+.+.|.+.+.+.|++++ +++|++|+.+++.+.+...++++++||.||.|.+..
T Consensus 199 ~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~ 253 (434)
T PRK07233 199 TLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPP 253 (434)
T ss_pred HHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHH
Confidence 356677777777899999 999999998887776666677789999999999864
No 95
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.14 E-value=5.6e-10 Score=118.77 Aligned_cols=115 Identities=19% Similarity=0.259 Sum_probs=86.9
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCccccc
Q 010693 83 RIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYL 162 (503)
Q Consensus 83 ~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (503)
...|||+||||||||+++|..|++ .|++|+|||+.. + |.+.. ..++. + ..
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~-~G~~v~li~~~~--G-----G~~~~---~~~~~---------------~----~~ 258 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAAR-KGIRTGIVAERF--G-----GQVLD---TMGIE---------------N----FI 258 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEecCC--C-----Ceeec---cCccc---------------c----cC
Confidence 457999999999999999999999 999999998521 1 11110 00000 0 00
Q ss_pred CCCccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCccc
Q 010693 163 DRPYGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSF 229 (503)
Q Consensus 163 ~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~v 229 (503)
.+.......+.+.|.+.+.+.|++++ +++|+++..+++.+.|.+.+|.++.++.||.|+|..++.
T Consensus 259 --~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~ 324 (517)
T PRK15317 259 --SVPETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWRN 324 (517)
T ss_pred --CCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCC
Confidence 01124556788889999989999999 899999998877888888888899999999999987643
No 96
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.13 E-value=3.3e-11 Score=125.06 Aligned_cols=137 Identities=20% Similarity=0.220 Sum_probs=33.2
Q ss_pred cEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccc-------hhHhhhhcCc-hhhhhhccCceEEEecCCc
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGV-------WVDEFEDIGL-VDCLDKTWPMTCVFINDHK 158 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~-------~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~ 158 (503)
|||||||||||++||+++|+ .|.+|+|||+.+..+.....+. +......-++ .+.............. .
T Consensus 1 DVVVvGgG~aG~~AAi~AAr-~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~--~ 77 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAAR-AGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQE--D 77 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHH-TTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST------------
T ss_pred CEEEECccHHHHHHHHHHHH-CCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccc--c
Confidence 89999999999999999999 9999999999876543322211 1000001111 1111111110000000 0
Q ss_pred ccccCCCccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEE-EEEeC--CC-cEEEeceEEecCCCCc
Q 010693 159 TKYLDRPYGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFES-SIVCD--DG-NEIKASLIVDASGFAS 227 (503)
Q Consensus 159 ~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~-~v~~~--~g-~~i~a~~vI~A~G~~s 227 (503)
....... ..+++..+...|.+.+.+.|++++ ++.|.++..+++.+ .|++. +| .+++|+++|||+|-..
T Consensus 78 ~~~~~~~-~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~g~ 150 (428)
T PF12831_consen 78 RYGWVSN-VPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGDGD 150 (428)
T ss_dssp --------------------------------------------------------------------------
T ss_pred ccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0000000 136677778888888888999999 99999999887533 23333 34 4799999999999654
No 97
>PLN02661 Putative thiazole synthesis
Probab=99.09 E-value=9.5e-10 Score=108.51 Aligned_cols=134 Identities=20% Similarity=0.270 Sum_probs=81.4
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHccC-CCcEEEEcCCCCCCCCCcccchhHhhhhcCc----hhhhhhccCceEEEecC
Q 010693 82 DRIRYDVIIIGTGPAGLRLAEQVSSRH-SVKVCCVDPSPLSTWPNNYGVWVDEFEDIGL----VDCLDKTWPMTCVFIND 156 (503)
Q Consensus 82 ~~~~~DvvIVGgGpaGl~~A~~La~~~-G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~----~~~~~~~~~~~~~~~~~ 156 (503)
+..++||+|||||++|+++|+.|++ . |++|+|||+....+.....|.. .+...-+ ...+. .+. +.++.
T Consensus 89 ~~~~~DVlIVGaG~AGl~AA~~La~-~~g~kV~viEk~~~~GGG~~~gg~--l~~~~vv~~~a~e~Le-ElG---V~fd~ 161 (357)
T PLN02661 89 TYADTDVVIVGAGSAGLSCAYELSK-NPNVKVAIIEQSVSPGGGAWLGGQ--LFSAMVVRKPAHLFLD-ELG---VPYDE 161 (357)
T ss_pred hcccCCEEEECCHHHHHHHHHHHHH-cCCCeEEEEecCcccccceeeCcc--cccccccccHHHHHHH-HcC---CCccc
Confidence 4567999999999999999999997 5 8999999987654321111110 0001100 01111 111 11111
Q ss_pred CcccccCCCcccc-CHHHHHHHHHHHHHh-CCcEEE-EeEEEEEEEeCCEEE-EEe------CC--C------cEEEece
Q 010693 157 HKTKYLDRPYGRV-SRNILKTKLLENCVS-NGVKFH-KAKVWHVNHQEFESS-IVC------DD--G------NEIKASL 218 (503)
Q Consensus 157 ~~~~~~~~~~~~v-~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~~~~~~-v~~------~~--g------~~i~a~~ 218 (503)
. ..|..+ +...+.+.|.+++.+ .|++++ ++.|+++..+++.+. |.+ .+ + ..++|+.
T Consensus 162 ~------dgy~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~Aka 235 (357)
T PLN02661 162 Q------ENYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKV 235 (357)
T ss_pred C------CCeeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCE
Confidence 1 112222 335556777776655 789999 899999988776432 221 11 1 2689999
Q ss_pred EEecCCCCcc
Q 010693 219 IVDASGFASS 228 (503)
Q Consensus 219 vI~A~G~~s~ 228 (503)
||+|+|+.+.
T Consensus 236 VVlATGh~g~ 245 (357)
T PLN02661 236 VVSSCGHDGP 245 (357)
T ss_pred EEEcCCCCCc
Confidence 9999997664
No 98
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.08 E-value=1.5e-09 Score=116.35 Aligned_cols=115 Identities=23% Similarity=0.274 Sum_probs=82.1
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCC
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDR 164 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (503)
.|||+||||||||+++|..|++ +|++|+|||+.... |.+.. ... + .+. .
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar-~g~~V~liE~~~~G------G~~~~-------~~~---------i--~~~------p 52 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGR-AKLDTLIIEKDDFG------GQITI-------TSE---------V--VNY------P 52 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHH-CCCCEEEEecCCCC------ceEEe-------ccc---------c--ccC------C
Confidence 5999999999999999999999 99999999975311 11000 000 0 000 0
Q ss_pred CccccCHHHHHHHHHHHHHhCCcEEEEeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCccccc
Q 010693 165 PYGRVSRNILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSFVE 231 (503)
Q Consensus 165 ~~~~v~r~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~vr~ 231 (503)
....+....+.+.+.+.+...|+++++++|+.++.+++...|.+.+| ++.++.||.|+|..+....
T Consensus 53 g~~~~~~~~l~~~l~~~~~~~gv~~~~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~~ 118 (555)
T TIGR03143 53 GILNTTGPELMQEMRQQAQDFGVKFLQAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRKLG 118 (555)
T ss_pred CCcCCCHHHHHHHHHHHHHHcCCEEeccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccCCCC
Confidence 01123455677788888888899988888999987766667777665 6899999999999775543
No 99
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.08 E-value=1.8e-09 Score=114.70 Aligned_cols=115 Identities=19% Similarity=0.317 Sum_probs=84.8
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccc
Q 010693 82 DRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKY 161 (503)
Q Consensus 82 ~~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (503)
+...|||+||||||||+++|..|++ .|++|+|||.. .|.... ...++. + .
T Consensus 209 ~~~~~dVvIIGgGpAGl~AA~~la~-~G~~v~li~~~--------~GG~~~--~~~~~~---------------~----~ 258 (515)
T TIGR03140 209 QLDPYDVLVVGGGPAGAAAAIYAAR-KGLRTAMVAER--------IGGQVK--DTVGIE---------------N----L 258 (515)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEecC--------CCCccc--cCcCcc---------------c----c
Confidence 4557999999999999999999999 99999999742 111000 000000 0 0
Q ss_pred cCCCccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCcc
Q 010693 162 LDRPYGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASS 228 (503)
Q Consensus 162 ~~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~ 228 (503)
...+ ......+...+.+.+.+.|++++ +++|+++..+++.+.+.+.+|.++.+|.+|.|+|...+
T Consensus 259 ~~~~--~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~ 324 (515)
T TIGR03140 259 ISVP--YTTGSQLAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWR 324 (515)
T ss_pred cccC--CCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcC
Confidence 0001 12355677888888888899999 89999998877778888888889999999999998753
No 100
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=99.07 E-value=5.7e-09 Score=98.98 Aligned_cols=157 Identities=17% Similarity=0.216 Sum_probs=89.0
Q ss_pred eceEEecCCCCcccccccCC-CCCccceeEEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCC
Q 010693 216 ASLIVDASGFASSFVEYDKP-RNHGYQIAHGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDS 294 (503)
Q Consensus 216 a~~vI~A~G~~s~vr~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~ 294 (503)
|.++|.|||..|++|+.... ......++.|+...-..-+.....-++. ...+ |..+|-+-..+
T Consensus 2 A~LtivaDG~~S~fRk~l~~~~~~v~S~fvGl~l~~~~lp~~~~ghvil-------------~~~~---pil~YqI~~~e 65 (276)
T PF08491_consen 2 APLTIVADGCFSKFRKELSDNKPQVRSYFVGLILKDAPLPKPNHGHVIL-------------GKPG---PILLYQISSNE 65 (276)
T ss_pred CCEEEEecCCchHHHHhhcCCCCceeeeEEEEEEcCCCCCCCCceEEEE-------------cCCC---cEEEEEcCCCc
Confidence 67999999999999986553 2335567788855432222222112221 1122 44444444445
Q ss_pred CeEEEecccccCCCCCCHHHHHHHHHHHH-hhcCCcc----ce-EeecceecccCCCCC--CCCCCCEEEeccCCCCcCC
Q 010693 295 NLVFLEETSLVSRPVLSYKEVKRRMAARL-RHMGIRV----KR-VIEDEKCLIPMGGPL--PVIPQSVMAIGSTSGLVHP 366 (503)
Q Consensus 295 ~~~~v~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~----~~-i~~~~~~~~p~~~~~--~~~~~~v~liGDAa~~~~P 366 (503)
.+++++..... .+..+..++++.+.+.. +.+.... .+ +.+..-...|-.... +....+++++|||+++-||
T Consensus 66 tR~Lvdvp~~k-~P~~~~g~l~~yl~~~v~P~LP~~lr~~f~~al~~~rirsMPn~~lp~~~~~~~G~vllGDA~nmrHP 144 (276)
T PF08491_consen 66 TRVLVDVPGPK-LPSVSNGELKEYLREVVAPQLPEELRPSFEKALEDGRIRSMPNSFLPASPNWKPGVVLLGDAANMRHP 144 (276)
T ss_pred eEEEEEeCCCc-cCCccchHHHHHHHHHHHhhchHHHHHHHHHHhccCCcceecccccCCCCCCCCCEEEEehhhcCcCC
Confidence 56666554221 12223334444443322 2221111 11 111111223322221 2356899999999999999
Q ss_pred cccHHHHHHHHhHHHHHHHHHHH
Q 010693 367 STGYMVARTMALAPALADAIAEC 389 (503)
Q Consensus 367 ~~G~G~~~al~~a~~lA~~l~~~ 389 (503)
+||+||+.|+.|+..|++.|...
T Consensus 145 LTGgGMTVAl~Dv~lL~~lL~~~ 167 (276)
T PF08491_consen 145 LTGGGMTVALNDVVLLRDLLSPI 167 (276)
T ss_pred ccccchhhHHHHHHHHHHHHhhh
Confidence 99999999999999999999876
No 101
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.06 E-value=1.6e-09 Score=111.41 Aligned_cols=132 Identities=20% Similarity=0.144 Sum_probs=83.5
Q ss_pred EEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCC------cccc-----hhHhhhhc--------------Cchhhh
Q 010693 89 IIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPN------NYGV-----WVDEFEDI--------------GLVDCL 143 (503)
Q Consensus 89 vIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~------~~g~-----~~~~l~~~--------------~~~~~~ 143 (503)
+|||||+||+++|+.|++ +|.+|+|+|+.+..+..- .|.. ....++.. +..+.+
T Consensus 1 vIIGgG~aGl~aAi~aa~-~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~ 79 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAR-EGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLI 79 (400)
T ss_pred CEEEEeHHHHHHHHHHHh-cCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHH
Confidence 699999999999999999 999999999987653210 0110 00000111 111111
Q ss_pred hhc-cCceEEEecCCcccccCCCccc-cCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEE
Q 010693 144 DKT-WPMTCVFINDHKTKYLDRPYGR-VSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIV 220 (503)
Q Consensus 144 ~~~-~~~~~~~~~~~~~~~~~~~~~~-v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI 220 (503)
... -.+..+..... ...|.. -....+.+.|.+.+++.|++++ +++|+++..+++.+.+.+ ++.++.||.||
T Consensus 80 ~~~~~~Gv~~~~~~~-----g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VI 153 (400)
T TIGR00275 80 DFFESLGLELKVEED-----GRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVI 153 (400)
T ss_pred HHHHHcCCeeEEecC-----CEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEE
Confidence 000 00111111000 001111 2356788889999988999999 899999988777777777 45689999999
Q ss_pred ecCCCCc
Q 010693 221 DASGFAS 227 (503)
Q Consensus 221 ~A~G~~s 227 (503)
.|+|..|
T Consensus 154 lAtG~~s 160 (400)
T TIGR00275 154 LATGGLS 160 (400)
T ss_pred ECCCCcc
Confidence 9999877
No 102
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.03 E-value=2.2e-09 Score=108.11 Aligned_cols=262 Identities=16% Similarity=0.243 Sum_probs=150.5
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCc------ccc---hhHhhhhcCc-------------
Q 010693 82 DRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNN------YGV---WVDEFEDIGL------------- 139 (503)
Q Consensus 82 ~~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~------~g~---~~~~l~~~~~------------- 139 (503)
+...|||+|||||..|.-+|+-.+. +|++|+++|+++-...... -|. ....+.++++
T Consensus 64 ~~~~fDVLIIGGGAtGaGcALDA~T-RGLktaLVE~~DF~SGTSSkSTKLiHGGVRYLekAi~~lD~~qyrlV~eaL~ER 142 (680)
T KOG0042|consen 64 STHEFDVLIIGGGATGAGCALDAAT-RGLKTALVEAGDFASGTSSKSTKLIHGGVRYLEKAISNLDYEQYRLVKEALNER 142 (680)
T ss_pred cCCcccEEEECCCccCcceeehhhc-ccceeEEEecccccCCccccchhhhcccHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3456999999999999999999999 9999999998865432211 011 0011111111
Q ss_pred ----------------------hhhhhhccCceEEEecCCcccccC-----------------------CCc----cccC
Q 010693 140 ----------------------VDCLDKTWPMTCVFINDHKTKYLD-----------------------RPY----GRVS 170 (503)
Q Consensus 140 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~----~~v~ 170 (503)
+-.+.+.|-+..+|---.+...+. ... |+-+
T Consensus 143 ~~lle~APhLs~~lPImlPvy~wwQvpYyw~G~K~YD~vAG~k~Lk~S~~lSk~~alE~fPmL~~~~L~Ga~VYyDGQ~n 222 (680)
T KOG0042|consen 143 ANLLEIAPHLSQPLPIMLPVYKWWQVPYYWVGLKIYDLVAGSKNLKSSYFLSKKEALEIFPMLRKDNLKGAMVYYDGQHN 222 (680)
T ss_pred HHHhhcCccccCCcceeeehhhhhhhhheeecceeeeeeccccccccceeecHHHHHHhCccccccCceeEEEEecCCCc
Confidence 001112344443331111000110 000 1133
Q ss_pred HHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCE-E-EEEeCC---Cc--EEEeceEEecCCCC-cccccccCCCC-Ccc
Q 010693 171 RNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFE-S-SIVCDD---GN--EIKASLIVDASGFA-SSFVEYDKPRN-HGY 240 (503)
Q Consensus 171 r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~-~-~v~~~~---g~--~i~a~~vI~A~G~~-s~vr~~~~~~~-~~~ 240 (503)
-.++.-.+.=.+..+|+.+. ..+|.++..++++ + .+.+.| |+ +|+|+.||.|+|.. ..+|++..... ...
T Consensus 223 DaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~Mdd~~~~~i~ 302 (680)
T KOG0042|consen 223 DARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRKMDDEDAKPIC 302 (680)
T ss_pred hHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHhhcccccCcee
Confidence 45566666667778999998 7799998776542 2 333333 44 69999999999965 46787765533 345
Q ss_pred ceeEEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCCeEEEecccccCC----CCCCHHH--
Q 010693 241 QIAHGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNLVFLEETSLVSR----PVLSYKE-- 314 (503)
Q Consensus 241 ~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~~v~~~~~~~~----~~~~~~~-- 314 (503)
....|+...++. -|.|+.+.+.|-.++ +| .-++.+|+.... +++.|+.... +..+.++
T Consensus 303 ~pSsGvHIVlP~-yY~P~~mGlldP~Ts----------Dg----RViFflPWqg~T-IaGTTD~pt~v~~~P~PtE~dIq 366 (680)
T KOG0042|consen 303 VPSSGVHIVLPG-YYCPENMGLLDPKTS----------DG----RVIFFLPWQGKT-IAGTTDIPTSVTHSPTPTEDDIQ 366 (680)
T ss_pred ccCCceeEEccc-ccCCcccccccCCCC----------CC----cEEEEeccCCce-eeccCCCCCCCCCCCCCCHHHHH
Confidence 556788777764 678888877665544 55 457888987544 4555544332 2233333
Q ss_pred -HHHHHHHHHhh-cCCccceEeecceecccCC-CCCC------CCCCCEEEeccC
Q 010693 315 -VKRRMAARLRH-MGIRVKRVIEDEKCLIPMG-GPLP------VIPQSVMAIGST 360 (503)
Q Consensus 315 -~~~~l~~~l~~-~~~~~~~i~~~~~~~~p~~-~~~~------~~~~~v~liGDA 360 (503)
+.+++..++.. ...+-.+++..+.++.|+- .+.. ...+.++.+|+.
T Consensus 367 fIL~ev~~yl~~~~~VrR~DVlsaWsGiRPLv~DP~~~~~t~sl~R~H~v~~~~~ 421 (680)
T KOG0042|consen 367 FILKEVQHYLSFDVEVRREDVLSAWSGIRPLVRDPKKVKDTQSLVRNHFVFVSPS 421 (680)
T ss_pred HHHHHHHHhhCCCcccchhhhHHHhhCCcccccCCCccccchhhhhhceEEecCC
Confidence 44455555522 1233445566667777763 3312 144566667664
No 103
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.01 E-value=7.1e-09 Score=110.72 Aligned_cols=148 Identities=18% Similarity=0.210 Sum_probs=86.2
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcc--c-ch-------------hHhhhhc-Cc--hh-
Q 010693 82 DRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNY--G-VW-------------VDEFEDI-GL--VD- 141 (503)
Q Consensus 82 ~~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~--g-~~-------------~~~l~~~-~~--~~- 141 (503)
-..++||+|||+|.|||+||+.+++ .|.+|+|+|+.+.......+ | .+ .+.+... ++ .+
T Consensus 13 ~~~~~DVlVIG~G~AGl~AAi~aae-~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~ 91 (541)
T PRK07804 13 WRDAADVVVVGSGVAGLTAALAARR-AGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDA 91 (541)
T ss_pred cccccCEEEECccHHHHHHHHHHHH-cCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHH
Confidence 3457999999999999999999999 99999999998654211111 1 10 0111111 11 00
Q ss_pred ---hhhh-----cc-CceEEEecCCcc-c-cc----CCCccc-------cCHHHHHHHHHHHHHhCCcEEE-EeEEEEEE
Q 010693 142 ---CLDK-----TW-PMTCVFINDHKT-K-YL----DRPYGR-------VSRNILKTKLLENCVSNGVKFH-KAKVWHVN 198 (503)
Q Consensus 142 ---~~~~-----~~-~~~~~~~~~~~~-~-~~----~~~~~~-------v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~ 198 (503)
.++. .| ....+.|+.... . .. ...+.+ ..-..+.+.|.+.+.+.|++++ ++.|+++.
T Consensus 92 v~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li 171 (541)
T PRK07804 92 VRSLVAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHALALDLL 171 (541)
T ss_pred HHHHHHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECeEeeeeE
Confidence 0000 01 001112211000 0 00 000001 1245688889998888899999 99999998
Q ss_pred EeCC-E---EEEE-----eCCC-cEEEeceEEecCCCCcccc
Q 010693 199 HQEF-E---SSIV-----CDDG-NEIKASLIVDASGFASSFV 230 (503)
Q Consensus 199 ~~~~-~---~~v~-----~~~g-~~i~a~~vI~A~G~~s~vr 230 (503)
.+++ . +.+. ..++ ..+.|+.||+|+|..+.+.
T Consensus 172 ~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~~~ 213 (541)
T PRK07804 172 TDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQLY 213 (541)
T ss_pred EcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCCCC
Confidence 7653 2 3332 1233 3689999999999887654
No 104
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.01 E-value=1.3e-09 Score=113.92 Aligned_cols=135 Identities=16% Similarity=0.171 Sum_probs=78.4
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHh--hhhcCchhhhhhccCceEEEecCCccccc
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDE--FEDIGLVDCLDKTWPMTCVFINDHKTKYL 162 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (503)
+|||+||||||||+.+|+.+++ .|.+|+|+|++...+...++|+.... +........+.. .....+..... .+
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~-~G~~V~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~-~~~~g~~~~~~---~~ 76 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAAN-HGAKVAIAEEPRVGGTCVIRGCVPKKLMVYGSTFGGEFED-AAGYGWTVGKA---RF 76 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHh-CCCcEEEEecCccCceeecCCcCchHHHHHHHHHHHHHhh-hHhcCcCCCCC---Cc
Confidence 5999999999999999999999 99999999985433333334442211 111111111111 00000000000 00
Q ss_pred CCCcccc-C-----HHHHHHHHHHHHHhCCcEEEEeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCccc
Q 010693 163 DRPYGRV-S-----RNILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSF 229 (503)
Q Consensus 163 ~~~~~~v-~-----r~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~v 229 (503)
.+..+ . ...+.+.+.+.+.+.|++++..++..++. ..+.+. .+|+++++|.||.|+|.....
T Consensus 77 --~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~--~~v~v~-~~g~~~~~d~lIiATGs~p~~ 144 (446)
T TIGR01424 77 --DWKKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGP--NTVEVL-QDGTTYTAKKILIAVGGRPQK 144 (446)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecC--CEEEEe-cCCeEEEcCEEEEecCCcCCC
Confidence 11111 1 12344455666777899999667766653 344443 456789999999999987643
No 105
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.00 E-value=4.3e-09 Score=110.30 Aligned_cols=66 Identities=18% Similarity=0.256 Sum_probs=53.9
Q ss_pred cccCHHHHHHHHHHHHHh----CC--cEEE-EeEEEEEEEe-CCEEEEEeCCCcEEEeceEEecCCCCc-cccccc
Q 010693 167 GRVSRNILKTKLLENCVS----NG--VKFH-KAKVWHVNHQ-EFESSIVCDDGNEIKASLIVDASGFAS-SFVEYD 233 (503)
Q Consensus 167 ~~v~r~~l~~~L~~~~~~----~g--v~~~-~~~v~~i~~~-~~~~~v~~~~g~~i~a~~vI~A~G~~s-~vr~~~ 233 (503)
+.|+...+.+.|.+.+.+ .| ++++ +++|++++.+ ++.+.|.+.+| +++|+.||.|.|.+| .+.+..
T Consensus 206 ~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~La~~~ 280 (497)
T PTZ00383 206 TTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSLLFAQKM 280 (497)
T ss_pred EEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHHHHHHHh
Confidence 458889999999999988 77 7788 9999999987 45677888777 699999999999877 344433
No 106
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.99 E-value=1.7e-09 Score=114.00 Aligned_cols=138 Identities=14% Similarity=0.149 Sum_probs=80.2
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhH-h-hhhcCchhhhhhccCceEEEecCCcccc
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVD-E-FEDIGLVDCLDKTWPMTCVFINDHKTKY 161 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~-~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (503)
..|||+||||||||+++|..|++ .|.+|+|||+....+...++|+-.. . +.....-...... ....+... .
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~-~G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~-~~~g~~~~-----~ 75 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQ-LGLKTALVEKGKLGGTCLHKGCIPSKALLHSAEVFQTAKKA-SPFGISVS-----G 75 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHh-CCCeEEEEEccCCCcceEcCCcCchHHHHHHHHHHHHHHHH-HhcCccCC-----C
Confidence 46999999999999999999999 9999999998643333334444221 1 1111110000000 00000000 0
Q ss_pred cCCCccc-cC-HHH----HHHHHHHHHHhCCcEEEEeEEEEEEEe-----CCEEEEEeCCC--cEEEeceEEecCCCCcc
Q 010693 162 LDRPYGR-VS-RNI----LKTKLLENCVSNGVKFHKAKVWHVNHQ-----EFESSIVCDDG--NEIKASLIVDASGFASS 228 (503)
Q Consensus 162 ~~~~~~~-v~-r~~----l~~~L~~~~~~~gv~~~~~~v~~i~~~-----~~~~~v~~~~g--~~i~a~~vI~A~G~~s~ 228 (503)
....+.. +. +.. +.+...+.+.+.|++++..+++.++.+ ++.+.|.+.+| .++.+|.||.|+|....
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~ 155 (472)
T PRK05976 76 PALDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPV 155 (472)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCC
Confidence 0111111 11 122 223334445668999996677666543 33677887777 47999999999998764
No 107
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.98 E-value=1.9e-07 Score=98.26 Aligned_cols=40 Identities=18% Similarity=0.239 Sum_probs=34.9
Q ss_pred cEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCC
Q 010693 187 VKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFA 226 (503)
Q Consensus 187 v~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~ 226 (503)
++++ +++|+.|+.+++++.|++++|+++.||.||.|.-..
T Consensus 238 ~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~ 278 (462)
T TIGR00562 238 TKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHK 278 (462)
T ss_pred CeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHH
Confidence 5677 899999999888888988888889999999998754
No 108
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.97 E-value=1.7e-08 Score=93.74 Aligned_cols=130 Identities=18% Similarity=0.183 Sum_probs=79.1
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCC----cccchh------------------HhhhhcCchhhh
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPN----NYGVWV------------------DEFEDIGLVDCL 143 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~----~~g~~~------------------~~l~~~~~~~~~ 143 (503)
.+|+|||+||||++||+.|+. +|++|+|+||+.-.+.+- .-+.+. +.+.+-|+
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~-aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~gl---- 76 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALRE-AGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGL---- 76 (331)
T ss_pred CcEEEEccchHHHHHHHHHHh-cCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCc----
Confidence 469999999999999999999 999999999985543211 111111 11111111
Q ss_pred hhccCceEEEecCC--cccccCCCcccc-CHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCc-EEEece
Q 010693 144 DKTWPMTCVFINDH--KTKYLDRPYGRV-SRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGN-EIKASL 218 (503)
Q Consensus 144 ~~~~~~~~~~~~~~--~~~~~~~~~~~v-~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~-~i~a~~ 218 (503)
-..|......+.+. .......+|--. .-..+.+.| ....++. +++|+.+...++.+++.+++|. ...+|.
T Consensus 77 V~~W~~~~~~~~~~~~~~~~d~~pyvg~pgmsalak~L-----AtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~ 151 (331)
T COG3380 77 VDVWTPAVWTFTGDGSPPRGDEDPYVGEPGMSALAKFL-----ATDLTVVLETRVTEVARTDNDWTLHTDDGTRHTQFDD 151 (331)
T ss_pred eeeccccccccccCCCCCCCCCCccccCcchHHHHHHH-----hccchhhhhhhhhhheecCCeeEEEecCCCcccccce
Confidence 11342222222211 111222233211 123444444 3456777 9999999999999999997764 689999
Q ss_pred EEecCCC
Q 010693 219 IVDASGF 225 (503)
Q Consensus 219 vI~A~G~ 225 (503)
||.|.-.
T Consensus 152 vvla~PA 158 (331)
T COG3380 152 VVLAIPA 158 (331)
T ss_pred EEEecCC
Confidence 9999743
No 109
>PLN02612 phytoene desaturase
Probab=98.97 E-value=3e-07 Score=98.70 Aligned_cols=51 Identities=10% Similarity=0.219 Sum_probs=39.5
Q ss_pred HHHHHHHHHhCCcEEE-EeEEEEEEEeCCE--EEEEeCCCcEEEeceEEecCCC
Q 010693 175 KTKLLENCVSNGVKFH-KAKVWHVNHQEFE--SSIVCDDGNEIKASLIVDASGF 225 (503)
Q Consensus 175 ~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~--~~v~~~~g~~i~a~~vI~A~G~ 225 (503)
.+.|.+.+++.|++++ +++|++|..++++ +.|.+.+|+++.||.||.|+..
T Consensus 311 ~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 311 CMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence 3445555556899999 9999999986543 3467778889999999999864
No 110
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.97 E-value=4.1e-09 Score=110.78 Aligned_cols=139 Identities=18% Similarity=0.258 Sum_probs=78.3
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCC-CCCcccchhH-hhhhcCchhhhhhccCceEEEecCCccc
Q 010693 83 RIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLST-WPNNYGVWVD-EFEDIGLVDCLDKTWPMTCVFINDHKTK 160 (503)
Q Consensus 83 ~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~-~~~~~g~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (503)
+..|||+||||||||+.+|..|++ .|.+|+|||+++..+ ...+.|+... .+... ..... .+.....+.......
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~-~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~-~~~~~--~~~~~~~~~~~~~~~ 78 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAK-LGKRVAVIERYRNVGGGCTHTGTIPSKALREA-VLRLI--GFNQNPLYSSYRVKL 78 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHh-CCCEEEEEeccccccccccccCCCCHHHHHHH-HHHHH--HHhhhhhhcccCCcC
Confidence 356999999999999999999999 999999999865433 2223332111 11000 00000 000000000000000
Q ss_pred ccCCCccc-cCH-----HHHHHHHHHHHHhCCcEEEEeEEEEEEEeCCEEEEEeCCCc--EEEeceEEecCCCCccc
Q 010693 161 YLDRPYGR-VSR-----NILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDDGN--EIKASLIVDASGFASSF 229 (503)
Q Consensus 161 ~~~~~~~~-v~r-----~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g~--~i~a~~vI~A~G~~s~v 229 (503)
.. ++.. +.+ ..+.+.+.+.+.+.|++++..++..++ ...+.|...+|+ ++++|.||.|+|.....
T Consensus 79 ~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~--~~~~~v~~~~g~~~~~~~d~lviATGs~p~~ 151 (461)
T PRK05249 79 RI--TFADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVD--PHTVEVECPDGEVETLTADKIVIATGSRPYR 151 (461)
T ss_pred cc--CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEec--CCEEEEEeCCCceEEEEcCEEEEcCCCCCCC
Confidence 00 1111 111 123344556667789999855554443 456777777775 79999999999976643
No 111
>PRK10262 thioredoxin reductase; Provisional
Probab=98.96 E-value=1.7e-08 Score=100.91 Aligned_cols=116 Identities=16% Similarity=0.275 Sum_probs=79.5
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCccccc
Q 010693 83 RIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYL 162 (503)
Q Consensus 83 ~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (503)
...+||+||||||||+++|..|++ +|++|++||+....+. +... .. + +.|+ .
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~-~g~~~~~ie~~~~gg~---~~~~-~~-----~-----~~~~-------~------ 55 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAAR-ANLQPVLITGMEKGGQ---LTTT-TE-----V-----ENWP-------G------ 55 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHH-CCCCeEEEEeecCCCc---eecC-ce-----E-----CCCC-------C------
Confidence 457999999999999999999999 9999999995422111 0000 00 0 0000 0
Q ss_pred CCCccccCHHHHHHHHHHHHHhCCcEEEEeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCccc
Q 010693 163 DRPYGRVSRNILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSF 229 (503)
Q Consensus 163 ~~~~~~v~r~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~v 229 (503)
....++...+.+.+.+.+...++++...+|++++..++.+.+..+++ ++.+|.||.|+|.....
T Consensus 56 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~v~~~~~-~~~~d~vilAtG~~~~~ 119 (321)
T PRK10262 56 --DPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLTGDSG-EYTCDALIIATGASARY 119 (321)
T ss_pred --CCCCCCHHHHHHHHHHHHHHCCCEEEeeEEEEEEecCCeEEEEecCC-EEEECEEEECCCCCCCC
Confidence 00113455667777787877888877557888887777777765444 69999999999987643
No 112
>PLN02507 glutathione reductase
Probab=98.95 E-value=5.1e-09 Score=110.69 Aligned_cols=139 Identities=18% Similarity=0.140 Sum_probs=78.9
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCC----------CCCCCCCcccchhH-h-hhhcCchhhhhhccCce
Q 010693 83 RIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPS----------PLSTWPNNYGVWVD-E-FEDIGLVDCLDKTWPMT 150 (503)
Q Consensus 83 ~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~----------~~~~~~~~~g~~~~-~-l~~~~~~~~~~~~~~~~ 150 (503)
+.+|||+||||||+|+.+|..+++ .|.+|+|||+. .-.+..-+.|+... . +....+...+... ...
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~-~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~-~~~ 100 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSAN-FGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDA-KNY 100 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHH-CCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHH-Hhc
Confidence 457999999999999999999999 99999999962 11111122233211 1 1111111111110 000
Q ss_pred EEEecCCcccccCCCccc-cC-----HHHHHHHHHHHHHhCCcEEEEeEEEEEEEeCCEEEEEeCCCc--EEEeceEEec
Q 010693 151 CVFINDHKTKYLDRPYGR-VS-----RNILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDDGN--EIKASLIVDA 222 (503)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~-v~-----r~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g~--~i~a~~vI~A 222 (503)
.+..... ..-.+.. ++ ...+...+.+.+...|++++..++..++ ...+.|.+.+|+ ++.+|.||.|
T Consensus 101 G~~~~~~----~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd--~~~v~V~~~~g~~~~~~~d~LIIA 174 (499)
T PLN02507 101 GWEINEK----VDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVG--PNEVEVTQLDGTKLRYTAKHILIA 174 (499)
T ss_pred CcccCCC----CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEec--CCEEEEEeCCCcEEEEEcCEEEEe
Confidence 0100000 0001111 11 1223344445556689999966776664 446778887876 5899999999
Q ss_pred CCCCccc
Q 010693 223 SGFASSF 229 (503)
Q Consensus 223 ~G~~s~v 229 (503)
+|.....
T Consensus 175 TGs~p~~ 181 (499)
T PLN02507 175 TGSRAQR 181 (499)
T ss_pred cCCCCCC
Confidence 9987643
No 113
>PRK06116 glutathione reductase; Validated
Probab=98.95 E-value=3.4e-09 Score=111.02 Aligned_cols=135 Identities=19% Similarity=0.254 Sum_probs=75.0
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHh--hhhcCchhhhhhccCceEEEecCCcccc
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDE--FEDIGLVDCLDKTWPMTCVFINDHKTKY 161 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (503)
.+|||+||||||||+++|+.|++ +|++|+|||+....+...+.|+.... +....+.+.+...-....+.....
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~-~G~~V~liE~~~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~---- 77 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAM-YGAKVALIEAKRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTEN---- 77 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH-CCCeEEEEeccchhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCC----
Confidence 36999999999999999999999 99999999986333333333432211 111111111111000000000000
Q ss_pred cCCCcccc-C-----HHHHHHHHHHHHHhCCcEEEEeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCccc
Q 010693 162 LDRPYGRV-S-----RNILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSF 229 (503)
Q Consensus 162 ~~~~~~~v-~-----r~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~v 229 (503)
...+..+ . ...+.+.+.+.+.+.|++++..+++.++ ...+ .+ +|+++++|.||.|+|.....
T Consensus 78 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~--~~~v--~~-~g~~~~~d~lViATGs~p~~ 145 (450)
T PRK06116 78 -KFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVD--AHTV--EV-NGERYTADHILIATGGRPSI 145 (450)
T ss_pred -CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc--CCEE--EE-CCEEEEeCEEEEecCCCCCC
Confidence 0011111 0 1223334455566689999955565553 3333 34 67789999999999987644
No 114
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.95 E-value=2.1e-07 Score=89.13 Aligned_cols=67 Identities=21% Similarity=0.263 Sum_probs=50.7
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEEEeEEEEEEEeCC--------------------EEEEEeCCC--cEEEeceEEecCC
Q 010693 167 GRVSRNILKTKLLENCVSNGVKFHKAKVWHVNHQEF--------------------ESSIVCDDG--NEIKASLIVDASG 224 (503)
Q Consensus 167 ~~v~r~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~--------------------~~~v~~~~g--~~i~a~~vI~A~G 224 (503)
++++...|...+++++...|+.+.+.+|++++.+.. ++.|...|+ +.+++.++|.|.|
T Consensus 238 Gwfdpw~LLs~~rrk~~~lGv~f~~GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAG 317 (509)
T KOG2853|consen 238 GWFDPWALLSGIRRKAITLGVQFVKGEVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAG 317 (509)
T ss_pred cccCHHHHHHHHHHHhhhhcceEecceEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEeccC
Confidence 346778899999999999999999889999876522 233444443 3699999999999
Q ss_pred CCc-cccccc
Q 010693 225 FAS-SFVEYD 233 (503)
Q Consensus 225 ~~s-~vr~~~ 233 (503)
++| .++++.
T Consensus 318 a~s~QvArlA 327 (509)
T KOG2853|consen 318 AWSGQVARLA 327 (509)
T ss_pred ccHHHHHHHh
Confidence 987 455543
No 115
>PTZ00058 glutathione reductase; Provisional
Probab=98.93 E-value=3.1e-09 Score=113.07 Aligned_cols=141 Identities=24% Similarity=0.306 Sum_probs=79.1
Q ss_pred CCCCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhH-h-hhhcCchhhhhhccCceEEEecCCc
Q 010693 81 SDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVD-E-FEDIGLVDCLDKTWPMTCVFINDHK 158 (503)
Q Consensus 81 ~~~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~-~-l~~~~~~~~~~~~~~~~~~~~~~~~ 158 (503)
+...+|||+||||||||..+|..+++ .|.+|+|||++.-.+..-++|+-.. . +........+... ....+ ....
T Consensus 44 ~~~~~yDvvVIG~G~aG~~aA~~aa~-~G~~ValIEk~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~-~~~Gi--~~~~ 119 (561)
T PTZ00058 44 KPRMVYDLIVIGGGSGGMAAARRAAR-NKAKVALVEKDYLGGTCVNVGCVPKKIMFNAASIHDILENS-RHYGF--DTQF 119 (561)
T ss_pred CCCccccEEEECcCHHHHHHHHHHHH-cCCeEEEEecccccccccccCCCCCchhhhhcccHHHHHHH-HhcCC--CccC
Confidence 44467999999999999999999999 9999999998744444445555321 1 1111111111110 00000 0000
Q ss_pred ccccCCCccc-cC-H----HHHHHHHHHHHHhCCcEEE-E-eEEEE---EE-------------EeCCEEEE------Ee
Q 010693 159 TKYLDRPYGR-VS-R----NILKTKLLENCVSNGVKFH-K-AKVWH---VN-------------HQEFESSI------VC 208 (503)
Q Consensus 159 ~~~~~~~~~~-v~-r----~~l~~~L~~~~~~~gv~~~-~-~~v~~---i~-------------~~~~~~~v------~~ 208 (503)
.+ .+.. +. + ..+.+.+.+.+++.||+++ + +++.+ +. .+++++.| ..
T Consensus 120 --~~--d~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 195 (561)
T PTZ00058 120 --SF--NLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQL 195 (561)
T ss_pred --cc--CHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceec
Confidence 00 1111 11 1 1233445555667899998 3 34443 11 11223444 23
Q ss_pred CCCcEEEeceEEecCCCCccc
Q 010693 209 DDGNEIKASLIVDASGFASSF 229 (503)
Q Consensus 209 ~~g~~i~a~~vI~A~G~~s~v 229 (503)
++|+++++|.||.|+|....+
T Consensus 196 ~~g~~i~ad~lVIATGS~P~~ 216 (561)
T PTZ00058 196 DDGQVIEGKNILIAVGNKPIF 216 (561)
T ss_pred CCCcEEECCEEEEecCCCCCC
Confidence 567789999999999987654
No 116
>PRK14694 putative mercuric reductase; Provisional
Probab=98.93 E-value=9.9e-09 Score=107.99 Aligned_cols=141 Identities=10% Similarity=0.099 Sum_probs=78.3
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhH-hh-hhcCchhhhhhccCceEEEecCCcc
Q 010693 82 DRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVD-EF-EDIGLVDCLDKTWPMTCVFINDHKT 159 (503)
Q Consensus 82 ~~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~-~l-~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (503)
+...|||+||||||||+++|..|++ .|++|+|||++...+...+.|+-.. .+ ....+..... ... +..+..
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~-~g~~v~lie~~~~GGtc~n~GciPsk~l~~~a~~~~~~~----~~~--~~~g~~ 75 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATE-RGARVTLIERGTIGGTCVNIGCVPSKIMIRAAHIAHLRR----ESP--FDDGLS 75 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHh-CCCcEEEEEccccccceecCCccccHHHHHHHHHHHHHh----hcc--ccCCcc
Confidence 4467999999999999999999999 9999999998643332223333111 11 1111000000 000 000000
Q ss_pred -cccCCCcccc-CH-HHHHHHH-----HHHHHh-CCcEEEEeEEEEEEEeCCEEEEEeCCCc--EEEeceEEecCCCCcc
Q 010693 160 -KYLDRPYGRV-SR-NILKTKL-----LENCVS-NGVKFHKAKVWHVNHQEFESSIVCDDGN--EIKASLIVDASGFASS 228 (503)
Q Consensus 160 -~~~~~~~~~v-~r-~~l~~~L-----~~~~~~-~gv~~~~~~v~~i~~~~~~~~v~~~~g~--~i~a~~vI~A~G~~s~ 228 (503)
......+..+ .+ +.....+ .+.+.+ .+++++..++..++ .+.+.|.+.+|+ ++++|.||.|+|....
T Consensus 76 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id--~~~~~V~~~~g~~~~~~~d~lViATGs~p~ 153 (468)
T PRK14694 76 AQAPVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVD--ERTLTVTLNDGGEQTVHFDRAFIGTGARPA 153 (468)
T ss_pred cCCCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEec--CCEEEEEecCCCeEEEECCEEEEeCCCCCC
Confidence 0000111111 11 1111222 122333 48899866787775 446778877764 7999999999998765
Q ss_pred ccc
Q 010693 229 FVE 231 (503)
Q Consensus 229 vr~ 231 (503)
...
T Consensus 154 ~p~ 156 (468)
T PRK14694 154 EPP 156 (468)
T ss_pred CCC
Confidence 433
No 117
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.92 E-value=5.6e-09 Score=109.83 Aligned_cols=136 Identities=15% Similarity=0.169 Sum_probs=76.9
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCC-CCCCcccchhH-h-hhhcCchhhhhhccCceEEEecCCccc
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLS-TWPNNYGVWVD-E-FEDIGLVDCLDKTWPMTCVFINDHKTK 160 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~-~~~~~~g~~~~-~-l~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (503)
.+|||+||||||+|+.+|..|++ .|.+|+|||+.+.. +...++|+... . +............ ....+.+..
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~-~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~-~~~g~~~~~---- 76 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAAD-LGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKAL-AEHGIVFGE---- 76 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhh-hhcCcccCC----
Confidence 46999999999999999999999 99999999986432 22333333211 1 1111111100000 000010000
Q ss_pred ccCCCcccc-C-H----HHHHHHHHHHHHhCCcEEEEeEEEEEEEeCCEEEEEeCCC--cEEEeceEEecCCCCcc
Q 010693 161 YLDRPYGRV-S-R----NILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDDG--NEIKASLIVDASGFASS 228 (503)
Q Consensus 161 ~~~~~~~~v-~-r----~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g--~~i~a~~vI~A~G~~s~ 228 (503)
...++..+ . + ..+.+.+.+.+++.||+++..++..+ +...+.|...+| .++.+|.||.|+|....
T Consensus 77 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~--~~~~v~v~~~~g~~~~~~~d~lViATGs~p~ 149 (471)
T PRK06467 77 -PKIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFT--GGNTLEVTGEDGKTTVIEFDNAIIAAGSRPI 149 (471)
T ss_pred -CCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc--cCCEEEEecCCCceEEEEcCEEEEeCCCCCC
Confidence 00111111 1 1 12223334455668999995454443 345677777666 37999999999998664
No 118
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.91 E-value=2.4e-08 Score=105.92 Aligned_cols=143 Identities=19% Similarity=0.311 Sum_probs=84.0
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcc---cchh--Hhh-hhcCc--------h---------
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNY---GVWV--DEF-EDIGL--------V--------- 140 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~---g~~~--~~l-~~~~~--------~--------- 140 (503)
.++||||||+|+||+++|+.+++ .|.+|+|||+.+..+....+ +.+. ..+ ...++ +
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~-~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~ 138 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKD-AGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGT 138 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHH-CCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCC
Confidence 57999999999999999999999 99999999998764321111 1110 000 01111 0
Q ss_pred ---hhhhh---------ccC-ceEEEec-----CCcc-cccCCCc-cccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEE
Q 010693 141 ---DCLDK---------TWP-MTCVFIN-----DHKT-KYLDRPY-GRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNH 199 (503)
Q Consensus 141 ---~~~~~---------~~~-~~~~~~~-----~~~~-~~~~~~~-~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~ 199 (503)
+.+.. .|- ...+.+. .... .....+. +...-..+...|.+.+++.|++++ +++|+++..
T Consensus 139 ~d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~ 218 (506)
T PRK06481 139 NDKALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITE 218 (506)
T ss_pred CCHHHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEe
Confidence 00000 010 0111111 1000 0000111 112234577888888889999999 999999987
Q ss_pred eCCEE---EEEeCCCc--EEEeceEEecCCCCc
Q 010693 200 QEFES---SIVCDDGN--EIKASLIVDASGFAS 227 (503)
Q Consensus 200 ~~~~~---~v~~~~g~--~i~a~~vI~A~G~~s 227 (503)
+++.+ .+...+++ ++.|+.||.|+|..+
T Consensus 219 ~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~ 251 (506)
T PRK06481 219 KDGKVTGVKVKINGKETKTISSKAVVVTTGGFG 251 (506)
T ss_pred cCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcc
Confidence 66643 33334443 699999999999544
No 119
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.91 E-value=1.2e-08 Score=90.56 Aligned_cols=131 Identities=22% Similarity=0.316 Sum_probs=78.6
Q ss_pred EEECCCHHHHHHHHHHHccC-----CCcEEEEcCCCCCCCCCcccch--hHhhh-----hcCchh--h--hhhccCceEE
Q 010693 89 IIIGTGPAGLRLAEQVSSRH-----SVKVCCVDPSPLSTWPNNYGVW--VDEFE-----DIGLVD--C--LDKTWPMTCV 152 (503)
Q Consensus 89 vIVGgGpaGl~~A~~La~~~-----G~~V~viE~~~~~~~~~~~g~~--~~~l~-----~~~~~~--~--~~~~~~~~~~ 152 (503)
+||||||+|++++..|.+ . ..+|+|||+.+. +....|..- ...+- .+.+.. . --..|-...-
T Consensus 1 AIIG~G~~G~~~l~~L~~-~~~~~~~~~I~vfd~~~~-G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~ 78 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLR-QADPKPPLEITVFDPSPF-GAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANG 78 (156)
T ss_pred CEECcCHHHHHHHHHHHH-hcCCCCCCEEEEEcCCCc-cccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcC
Confidence 599999999999999998 5 579999998544 212222111 00010 011100 0 0001111000
Q ss_pred EecCCcccccCCCccccCHHHHHHHHHHHHH------hCCcEEE--EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCC
Q 010693 153 FINDHKTKYLDRPYGRVSRNILKTKLLENCV------SNGVKFH--KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASG 224 (503)
Q Consensus 153 ~~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~------~~gv~~~--~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G 224 (503)
. +. .....+..++.|..+-++|.+... ..|+++. ..+|+++...+++..|.+.+|..+.+|.||.|+|
T Consensus 79 ~-~~---~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~G 154 (156)
T PF13454_consen 79 A-DE---AEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATG 154 (156)
T ss_pred c-cc---ccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCC
Confidence 0 00 011122334677666666554432 2466654 7799999999999999999999999999999999
Q ss_pred C
Q 010693 225 F 225 (503)
Q Consensus 225 ~ 225 (503)
+
T Consensus 155 h 155 (156)
T PF13454_consen 155 H 155 (156)
T ss_pred C
Confidence 7
No 120
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.91 E-value=2e-08 Score=105.53 Aligned_cols=145 Identities=19% Similarity=0.174 Sum_probs=85.1
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCC--cccc------------hh-Hhhhhc-Cc--hhhhh---
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPN--NYGV------------WV-DEFEDI-GL--VDCLD--- 144 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~--~~g~------------~~-~~l~~~-~~--~~~~~--- 144 (503)
+||+|||||+||++||+.+++ .|.+|+|+|+.+...... .-|. +. +.+... ++ .+.+.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae-~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~ 80 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAK-KGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVI 80 (466)
T ss_pred CeEEEECccHHHHHHHHHHHH-CCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 799999999999999999999 999999999975321100 0011 00 001110 01 00000
Q ss_pred -h-----cc-CceEEEecCCc---ccccCCCccc--cCHHHHHHHHHHHHHhCCcEEEEeEEEEEEEeCCEEEEEeCCCc
Q 010693 145 -K-----TW-PMTCVFINDHK---TKYLDRPYGR--VSRNILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDDGN 212 (503)
Q Consensus 145 -~-----~~-~~~~~~~~~~~---~~~~~~~~~~--v~r~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g~ 212 (503)
. .| ....+.|+... .......+.. ..-..+.+.|.+.+.+.|++++...++++..+++.+.....+|.
T Consensus 81 ~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~v~~l~~~~g~v~Gv~~~g~ 160 (466)
T PRK08401 81 SKSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRGFAEELAIKNGKAYGVFLDGE 160 (466)
T ss_pred HHHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEeEeEEEEeeCCEEEEEEECCE
Confidence 0 01 11112221110 0001110100 12357888899999889999984488888776665543333566
Q ss_pred EEEeceEEecCCCCccccc
Q 010693 213 EIKASLIVDASGFASSFVE 231 (503)
Q Consensus 213 ~i~a~~vI~A~G~~s~vr~ 231 (503)
.+.++.||.|+|..+....
T Consensus 161 ~i~a~~VVLATGG~~~~~~ 179 (466)
T PRK08401 161 LLKFDATVIATGGFSGLFK 179 (466)
T ss_pred EEEeCeEEECCCcCcCCCC
Confidence 8999999999999886543
No 121
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.90 E-value=3.2e-08 Score=104.15 Aligned_cols=143 Identities=20% Similarity=0.193 Sum_probs=82.1
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCC--CCCCc--ccc--------------------hhHhhhhcC-
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLS--TWPNN--YGV--------------------WVDEFEDIG- 138 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~--~~~~~--~g~--------------------~~~~l~~~~- 138 (503)
.++||||||+|+||+++|+.+++ +|.+|+|||+.+.. +.... .|. +.+.+...+
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~-~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAARE-AGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGG 81 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCC
Confidence 46899999999999999999999 99999999998631 11000 010 000000000
Q ss_pred c--hhhh----hh-----ccC-ceEEEecCC--cccccCCCccc--cCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeC
Q 010693 139 L--VDCL----DK-----TWP-MTCVFINDH--KTKYLDRPYGR--VSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQE 201 (503)
Q Consensus 139 ~--~~~~----~~-----~~~-~~~~~~~~~--~~~~~~~~~~~--v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~ 201 (503)
. .+.+ .. .|- ...+.+... ........... -....+...|.+.+++.|++++ +++|+++..++
T Consensus 82 ~~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~ 161 (466)
T PRK08274 82 RTDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEIRYDAPVTALELDD 161 (466)
T ss_pred CCCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC
Confidence 0 0000 00 010 011111110 00000000000 1135678888889989999999 99999998866
Q ss_pred CEEE-EEe--CCC--cEEEeceEEecCCCCc
Q 010693 202 FESS-IVC--DDG--NEIKASLIVDASGFAS 227 (503)
Q Consensus 202 ~~~~-v~~--~~g--~~i~a~~vI~A~G~~s 227 (503)
+.+. |.+ .+| .++.|+.||.|+|..+
T Consensus 162 g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~ 192 (466)
T PRK08274 162 GRFVGARAGSAAGGAERIRAKAVVLAAGGFE 192 (466)
T ss_pred CeEEEEEEEccCCceEEEECCEEEECCCCCC
Confidence 6543 333 233 3689999999999543
No 122
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.90 E-value=5.9e-07 Score=94.53 Aligned_cols=38 Identities=21% Similarity=0.107 Sum_probs=33.9
Q ss_pred cEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCC
Q 010693 187 VKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASG 224 (503)
Q Consensus 187 v~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G 224 (503)
++++ +++|+.|+.+++++.|.+.+|+++.||.||.|.-
T Consensus 239 ~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p 277 (463)
T PRK12416 239 TVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAP 277 (463)
T ss_pred ccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCC
Confidence 4688 9999999998888988888888899999999984
No 123
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.90 E-value=1.6e-08 Score=105.09 Aligned_cols=131 Identities=19% Similarity=0.235 Sum_probs=76.8
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHccCCCc-EEEEcCCCCCCCCCcccchhHh-hhhcCchhhhhhccCceEEEecCCcc
Q 010693 82 DRIRYDVIIIGTGPAGLRLAEQVSSRHSVK-VCCVDPSPLSTWPNNYGVWVDE-FEDIGLVDCLDKTWPMTCVFINDHKT 159 (503)
Q Consensus 82 ~~~~~DvvIVGgGpaGl~~A~~La~~~G~~-V~viE~~~~~~~~~~~g~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (503)
.+.++||+|||||++|+++|+.|.+ +|.+ ++|||++...+. .|... ...+-+. -+.....++...-
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~-~g~~~~~i~Ek~~~~Gg-----~W~~~ry~~l~~~------~p~~~~~~~~~p~ 72 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQ-AGVPDFVIFEKRDDVGG-----TWRYNRYPGLRLD------SPKWLLGFPFLPF 72 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHH-cCCCcEEEEEccCCcCC-----cchhccCCceEEC------CchheeccCCCcc
Confidence 4467999999999999999999999 9998 999999865442 22110 0000000 0000001111100
Q ss_pred cccCCCccccCHHHHHHHHHHHHHhCCcE----EE-EeEEEEEEEeCCEEEEEeCCCcE--EEeceEEecCCCCc
Q 010693 160 KYLDRPYGRVSRNILKTKLLENCVSNGVK----FH-KAKVWHVNHQEFESSIVCDDGNE--IKASLIVDASGFAS 227 (503)
Q Consensus 160 ~~~~~~~~~v~r~~l~~~L~~~~~~~gv~----~~-~~~v~~i~~~~~~~~v~~~~g~~--i~a~~vI~A~G~~s 227 (503)
.....+ -....+...+.+.+...+.. +. ..++...+.+++.+.|++++|.+ +.||.||.|+|..+
T Consensus 73 -~~~~~~--~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~ 144 (443)
T COG2072 73 -RWDEAF--APFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLS 144 (443)
T ss_pred -CCcccC--CCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCC
Confidence 000111 11222556666666665543 33 33444444445689999998875 55999999999865
No 124
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.89 E-value=1.3e-08 Score=106.24 Aligned_cols=123 Identities=20% Similarity=0.240 Sum_probs=73.6
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCC-C-CCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccc
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPL-S-TWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKY 161 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~-~-~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (503)
..|||+||||||||+.+|..|++ +|.+|+|||+++. . +...+.|+.... ..+.....
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~-~g~~V~lie~~~~~~GG~~~~~gcip~k-------~l~~~~~~------------- 60 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAK-AGWRVALIEQSNAMYGGTCINIGCIPTK-------TLVHDAQQ------------- 60 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHH-CCCeEEEEcCCCCccceeEeeccccchH-------HHHHHhcc-------------
Confidence 46999999999999999999999 9999999998642 1 111122221110 00000000
Q ss_pred cCCCccc-cCH-HHHHHH----HHHHHHh-CCcEEEEeEEEEEEEeCCEEEEEeCCCc-EEEeceEEecCCCCcccc
Q 010693 162 LDRPYGR-VSR-NILKTK----LLENCVS-NGVKFHKAKVWHVNHQEFESSIVCDDGN-EIKASLIVDASGFASSFV 230 (503)
Q Consensus 162 ~~~~~~~-v~r-~~l~~~----L~~~~~~-~gv~~~~~~v~~i~~~~~~~~v~~~~g~-~i~a~~vI~A~G~~s~vr 230 (503)
...+.. +.+ ..+... ..+.+.+ .|++++..++..++ .+.+.|.+.+|. ++.+|.||.|+|......
T Consensus 61 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~--~~~~~v~~~~g~~~~~~d~lviATGs~p~~p 134 (441)
T PRK08010 61 -HTDFVRAIQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFIN--NHSLRVHRPEGNLEIHGEKIFINTGAQTVVP 134 (441)
T ss_pred -CCCHHHHHHHHHHHHHHHHHhHHHHHhhcCCcEEEEEEEEEec--CCEEEEEeCCCeEEEEeCEEEEcCCCcCCCC
Confidence 001111 111 111111 2223333 58999855666654 356777777775 699999999999877543
No 125
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.89 E-value=7.1e-07 Score=93.54 Aligned_cols=40 Identities=23% Similarity=0.278 Sum_probs=34.9
Q ss_pred EEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCc
Q 010693 188 KFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFAS 227 (503)
Q Consensus 188 ~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s 227 (503)
+++ +++|++|+.+++++.|.+.+|+++.||.||.|.....
T Consensus 235 ~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~~ 275 (451)
T PRK11883 235 TIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPV 275 (451)
T ss_pred eEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHHH
Confidence 678 9999999988888888888998999999999986543
No 126
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.89 E-value=2.2e-08 Score=104.73 Aligned_cols=84 Identities=14% Similarity=0.119 Sum_probs=60.4
Q ss_pred ccCHHHHHHHHHHHHHh-CCcEEE-EeEEEEEEEe-CCEEEEE---eCCCc--EEEeceEEecCCCCc-ccccccCCCC-
Q 010693 168 RVSRNILKTKLLENCVS-NGVKFH-KAKVWHVNHQ-EFESSIV---CDDGN--EIKASLIVDASGFAS-SFVEYDKPRN- 237 (503)
Q Consensus 168 ~v~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~-~~~~~v~---~~~g~--~i~a~~vI~A~G~~s-~vr~~~~~~~- 237 (503)
.|+...+.+.|.+.+.+ .|++++ +++|+++..+ ++.+.+. +.+|+ +++||+||.|.|.+| .+.+..+...
T Consensus 180 ~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~Gi~~~ 259 (497)
T PRK13339 180 DVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKSGIPES 259 (497)
T ss_pred ecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHHHcCCCcc
Confidence 48889999999998865 589998 9999999887 6667765 34443 699999999999887 3544443321
Q ss_pred --CccceeEEEEEEec
Q 010693 238 --HGYQIAHGILAEVE 251 (503)
Q Consensus 238 --~~~~~~~g~~~~~~ 251 (503)
.....+.|....+.
T Consensus 260 ~~~~i~PvkGq~l~l~ 275 (497)
T PRK13339 260 KHLGGFPISGQFLRCT 275 (497)
T ss_pred CCCceEeeeEEEEEec
Confidence 23444567666554
No 127
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.88 E-value=2.7e-08 Score=104.65 Aligned_cols=136 Identities=20% Similarity=0.198 Sum_probs=75.7
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhH-h-hhhcCchhhhhhccCceEEEecCCcccc
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVD-E-FEDIGLVDCLDKTWPMTCVFINDHKTKY 161 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~-~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (503)
..|||+||||||||+++|..|++ +|.+|+|+|+.+..+...++|+-.. . +......+.... .....+... .
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~-~G~~V~liE~~~~GG~c~~~gciP~k~l~~~~~~~~~~~~-~~~~g~~~~-~---- 75 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQ-LGLKVAIVEKEKLGGTCLNRGCIPSKALLHAAERADEARH-SEDFGIKAE-N---- 75 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHH-CCCcEEEEeccccccceeecccCCcHHHHHhhhHHHHHHH-HHhcCcccC-C----
Confidence 46999999999999999999999 9999999998753333233333111 1 111111111110 000000000 0
Q ss_pred cCCCccc-cCH-----HHHHHHHHHHHHhCCcEEEEeEEEEEEEeCCEEEEEeCC-CcEEEeceEEecCCCCcc
Q 010693 162 LDRPYGR-VSR-----NILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDD-GNEIKASLIVDASGFASS 228 (503)
Q Consensus 162 ~~~~~~~-v~r-----~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~-g~~i~a~~vI~A~G~~s~ 228 (503)
....+.. +++ ..+...+.+.+.+.|++++..+++.++ ...+.|...+ ++++.+|.||.|+|....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~--~~~~~v~~~~~~~~~~~d~lViAtGs~p~ 147 (462)
T PRK06416 76 VGIDFKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVD--PNTVRVMTEDGEQTYTAKNIILATGSRPR 147 (462)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc--CCEEEEecCCCcEEEEeCEEEEeCCCCCC
Confidence 0001110 111 122233555566789999855555543 3456665433 357999999999998763
No 128
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.88 E-value=7.7e-09 Score=108.16 Aligned_cols=133 Identities=20% Similarity=0.241 Sum_probs=73.2
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHh--hhhcCchhhhhhccCceEEEecCCccccc
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDE--FEDIGLVDCLDKTWPMTCVFINDHKTKYL 162 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (503)
+|||+||||||||+.+|..|++ .|.+|+|||+....+...++|+-... +....+...... .....+..... .
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~-~G~~V~liE~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~-~~~~g~~~~~~----~ 75 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAE-HGAKALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERMHD-AADYGFYQNLE----N 75 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHH-CCCcEEEecccccccceeccCcCccHHHHHHHHHHHHHhH-HhhcCcccCCc----C
Confidence 5999999999999999999999 99999999986543433344442110 111111111110 00000000000 0
Q ss_pred CCCccccC--H----HHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCccc
Q 010693 163 DRPYGRVS--R----NILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSF 229 (503)
Q Consensus 163 ~~~~~~v~--r----~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~v 229 (503)
...+..+. + ..+.+.+.+.+.+.|++++ ++.+ .. ++..+.+ +|+++.+|.||.|+|.....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~-~~--~~~~v~v---~~~~~~~d~vIiAtGs~p~~ 143 (450)
T TIGR01421 76 TFNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHAR-FT--KDGTVEV---NGRDYTAPHILIATGGKPSF 143 (450)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-Ec--cCCEEEE---CCEEEEeCEEEEecCCCCCC
Confidence 00111111 1 1233445555667899998 5432 11 2333333 46679999999999977643
No 129
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.88 E-value=2.2e-08 Score=105.14 Aligned_cols=85 Identities=14% Similarity=0.197 Sum_probs=61.8
Q ss_pred ccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeC-CEEEEEe---CCC--cEEEeceEEecCCCCc-ccccccCCC---
Q 010693 168 RVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQE-FESSIVC---DDG--NEIKASLIVDASGFAS-SFVEYDKPR--- 236 (503)
Q Consensus 168 ~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~-~~~~v~~---~~g--~~i~a~~vI~A~G~~s-~vr~~~~~~--- 236 (503)
.|+...+...|.+.+++.|++++ +++|++++.++ +.+.+.+ .+| .+++|++||.|.|.+| .+++..+..
T Consensus 174 ~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~Gi~~~~ 253 (483)
T TIGR01320 174 DVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSGIPEVK 253 (483)
T ss_pred EECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcCCCcCC
Confidence 48899999999999999999999 99999998864 4566653 234 2699999999999765 555544433
Q ss_pred CCccceeEEEEEEecC
Q 010693 237 NHGYQIAHGILAEVES 252 (503)
Q Consensus 237 ~~~~~~~~g~~~~~~~ 252 (503)
......+.|....++.
T Consensus 254 ~~~i~P~~Gq~l~l~~ 269 (483)
T TIGR01320 254 GFAGFPVSGLFLRCGN 269 (483)
T ss_pred CCceeeeeEEEEEeCC
Confidence 2233456677666553
No 130
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.87 E-value=1.4e-08 Score=107.01 Aligned_cols=139 Identities=17% Similarity=0.265 Sum_probs=74.6
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcC-------CCCCCCCCcccchhH-h-hhhcCchhhhhhccCceEEEe
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDP-------SPLSTWPNNYGVWVD-E-FEDIGLVDCLDKTWPMTCVFI 154 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~-------~~~~~~~~~~g~~~~-~-l~~~~~~~~~~~~~~~~~~~~ 154 (503)
..||++||||||||+++|+.+++ .|.+|+|||+ ....+...++|+... . +....+.....+......+..
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~-~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~ 81 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQ-LGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHV 81 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHh-CCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccC
Confidence 36999999999999999999999 9999999998 211122222232111 1 111111000110000000100
Q ss_pred cCCcccccCCCccc-cCH-H----HHHHHHHHHHHhCCcEEEEeEEEEEEEeCCEEEEEe--CCCcEEEeceEEecCCCC
Q 010693 155 NDHKTKYLDRPYGR-VSR-N----ILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVC--DDGNEIKASLIVDASGFA 226 (503)
Q Consensus 155 ~~~~~~~~~~~~~~-v~r-~----~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~--~~g~~i~a~~vI~A~G~~ 226 (503)
. ...-.+.. +.+ . .+.+.+.+.++..|++++..++..+..+++...|.+ .+++++++|.||.|+|..
T Consensus 82 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~ 156 (475)
T PRK06327 82 D-----GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSE 156 (475)
T ss_pred C-----CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCC
Confidence 0 00011111 111 1 222344455566899999666666554443333443 345689999999999987
Q ss_pred cc
Q 010693 227 SS 228 (503)
Q Consensus 227 s~ 228 (503)
..
T Consensus 157 p~ 158 (475)
T PRK06327 157 PR 158 (475)
T ss_pred CC
Confidence 64
No 131
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.87 E-value=2.7e-08 Score=107.13 Aligned_cols=58 Identities=17% Similarity=0.210 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEE-E---EeCCCc--EEEeceEEecCCCCccc
Q 010693 172 NILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESS-I---VCDDGN--EIKASLIVDASGFASSF 229 (503)
Q Consensus 172 ~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~-v---~~~~g~--~i~a~~vI~A~G~~s~v 229 (503)
..+...|.+.+.+.|++++ ++.|+++..+++.+. + ...+|+ .+.|+.||.|+|..+.+
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~ 199 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGRV 199 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcCC
Confidence 5678888888888999999 999999987666432 2 234554 58999999999987754
No 132
>PRK06370 mercuric reductase; Validated
Probab=98.87 E-value=1.4e-08 Score=106.71 Aligned_cols=136 Identities=18% Similarity=0.178 Sum_probs=74.4
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhH-h-hhhcCchhhhhh-ccCceEEEecCCcc
Q 010693 83 RIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVD-E-FEDIGLVDCLDK-TWPMTCVFINDHKT 159 (503)
Q Consensus 83 ~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~-~-l~~~~~~~~~~~-~~~~~~~~~~~~~~ 159 (503)
+.+|||+||||||||+++|+.|++ .|.+|+|||+.+..+...++|+-.. . +........... ...+ +.....
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~-~G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g--~~~~~~-- 77 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAG-LGMKVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYG--VSVGGP-- 77 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHh-CCCeEEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcC--cccCcc--
Confidence 346999999999999999999999 9999999998754444344444211 1 111111000000 0000 000000
Q ss_pred cccCCCccc-cCH-----HHHHHHHHHHHHhC-CcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCccccc
Q 010693 160 KYLDRPYGR-VSR-----NILKTKLLENCVSN-GVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSFVE 231 (503)
Q Consensus 160 ~~~~~~~~~-v~r-----~~l~~~L~~~~~~~-gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~vr~ 231 (503)
....+.. +.+ ..+...+.+...+. |++++ ++.+ . .++..+.+ +|.++.+|.||.|+|.......
T Consensus 78 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~-~--~~~~~v~v---~~~~~~~d~lViATGs~p~~p~ 149 (463)
T PRK06370 78 --VSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHAR-F--ESPNTVRV---GGETLRAKRIFINTGARAAIPP 149 (463)
T ss_pred --CccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEE-E--ccCCEEEE---CcEEEEeCEEEEcCCCCCCCCC
Confidence 0001111 111 11223444555555 99998 5543 2 22333433 4567999999999998775543
No 133
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.87 E-value=4e-08 Score=102.64 Aligned_cols=141 Identities=20% Similarity=0.254 Sum_probs=82.8
Q ss_pred cEEEECCCHHHHHHHHHHHccCC-CcEEEEcCCCCCCCCCcc-c--chh---HhhhhcCc----h---------------
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHS-VKVCCVDPSPLSTWPNNY-G--VWV---DEFEDIGL----V--------------- 140 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G-~~V~viE~~~~~~~~~~~-g--~~~---~~l~~~~~----~--------------- 140 (503)
||||||||+||+++|+.+++ +| .+|+|||+.+..+....+ + .+. ...+..++ +
T Consensus 1 DVvVVG~G~AGl~AA~~aa~-~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKK-AGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGIND 79 (439)
T ss_pred CEEEECCCHHHHHHHHHHHH-cCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCC
Confidence 89999999999999999999 99 999999998764322111 1 000 00000111 0
Q ss_pred -hhhh----h-----ccC--ceEEEecCC---cccccC---CCc-cccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEe
Q 010693 141 -DCLD----K-----TWP--MTCVFINDH---KTKYLD---RPY-GRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQ 200 (503)
Q Consensus 141 -~~~~----~-----~~~--~~~~~~~~~---~~~~~~---~~~-~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~ 200 (503)
+.+. . .|- +..+..... ...... .+. +...-..+.+.|.+.+++.|++++ +++|+++..+
T Consensus 80 ~~l~~~~~~~~~~~i~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~ 159 (439)
T TIGR01813 80 PELVRILAEESADAVDWLQDGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGIDTRLNSKVEDLIQD 159 (439)
T ss_pred HHHHHHHHhccHHHHHHHHhCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCEEEeCCEeeEeEEC
Confidence 0000 0 010 111111100 000000 010 112346788899999999999999 9999999885
Q ss_pred C-C---EEEEEeCCCc--EEEeceEEecCCCCcc
Q 010693 201 E-F---ESSIVCDDGN--EIKASLIVDASGFASS 228 (503)
Q Consensus 201 ~-~---~~~v~~~~g~--~i~a~~vI~A~G~~s~ 228 (503)
+ + ++.+...+++ .+.++.||.|+|..+.
T Consensus 160 ~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 160 DQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred CCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 4 3 2334334443 4789999999997764
No 134
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.87 E-value=3.6e-08 Score=103.68 Aligned_cols=84 Identities=13% Similarity=0.200 Sum_probs=58.9
Q ss_pred ccCHHHHHHHHHHHHHhCC-cEEE-EeEEEEEEEeCC-EEEEEeC---CCc--EEEeceEEecCCCCc-ccccccCCCC-
Q 010693 168 RVSRNILKTKLLENCVSNG-VKFH-KAKVWHVNHQEF-ESSIVCD---DGN--EIKASLIVDASGFAS-SFVEYDKPRN- 237 (503)
Q Consensus 168 ~v~r~~l~~~L~~~~~~~g-v~~~-~~~v~~i~~~~~-~~~v~~~---~g~--~i~a~~vI~A~G~~s-~vr~~~~~~~- 237 (503)
.|+...+.+.|.+.+++.| ++++ +++|++++.+++ .+.|.+. +|. +++|++||.|.|.++ .+++..+...
T Consensus 179 ~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~Gi~~~ 258 (494)
T PRK05257 179 DVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKSGIPEA 258 (494)
T ss_pred EECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHcCCCcc
Confidence 4788899999999998876 8998 999999998555 3666543 353 699999999988765 4554443321
Q ss_pred --CccceeEEEEEEec
Q 010693 238 --HGYQIAHGILAEVE 251 (503)
Q Consensus 238 --~~~~~~~g~~~~~~ 251 (503)
.....+.|....++
T Consensus 259 ~~~~i~PvrGq~l~~~ 274 (494)
T PRK05257 259 KGYGGFPVSGQFLVCE 274 (494)
T ss_pred CCCCeeeeeEEEEEcC
Confidence 22334566665554
No 135
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.87 E-value=2.8e-08 Score=103.16 Aligned_cols=59 Identities=22% Similarity=0.296 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEE-EEe---CCCc--EEEeceEEecCCCCcc
Q 010693 170 SRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESS-IVC---DDGN--EIKASLIVDASGFASS 228 (503)
Q Consensus 170 ~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~-v~~---~~g~--~i~a~~vI~A~G~~s~ 228 (503)
....+...|.+.+++.|++++ +++++++..+++.+. |.. .+|+ ++.|+.||.|+|..+.
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 357788999999999999999 999999999887443 222 3454 6899999999997664
No 136
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.86 E-value=1.5e-08 Score=106.58 Aligned_cols=135 Identities=21% Similarity=0.256 Sum_probs=73.7
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCC-CCCCCcccchhHh--hhhcCchhhhhh-ccCceEEEecCCcc
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPL-STWPNNYGVWVDE--FEDIGLVDCLDK-TWPMTCVFINDHKT 159 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~-~~~~~~~g~~~~~--l~~~~~~~~~~~-~~~~~~~~~~~~~~ 159 (503)
.+|||+||||||||+.+|..+++ +|.+|+|||++.. .+...++|+.... +........+.. ......+..
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~-~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~----- 75 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQ-LGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEV----- 75 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHh-CCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccc-----
Confidence 35999999999999999999999 9999999997433 3333344442211 111111100000 000000100
Q ss_pred cccCCCccc-cCH-----HHHHHHHHHHHHhCCcEEEEeEEEEEEEeCCEEEEEeCCCc--EEEeceEEecCCCCc
Q 010693 160 KYLDRPYGR-VSR-----NILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDDGN--EIKASLIVDASGFAS 227 (503)
Q Consensus 160 ~~~~~~~~~-v~r-----~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g~--~i~a~~vI~A~G~~s 227 (503)
.....+.. ..+ ..+.+.+.......|++++..+. .+. ++..+.|...+|+ ++++|.||.|+|...
T Consensus 76 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a-~~~-~~~~v~v~~~~g~~~~~~~d~lVIATGs~p 148 (466)
T PRK06115 76 -KPTLNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWG-RLD-GVGKVVVKAEDGSETQLEAKDIVIATGSEP 148 (466)
T ss_pred -cCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEc-cCCEEEEEcCCCceEEEEeCEEEEeCCCCC
Confidence 00011111 111 11223344445567899883332 222 2346677766764 699999999999865
No 137
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.85 E-value=2.7e-08 Score=105.16 Aligned_cols=145 Identities=19% Similarity=0.314 Sum_probs=84.7
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcc--c-ch-------------hHhhhhc-Cc--hh----
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNY--G-VW-------------VDEFEDI-GL--VD---- 141 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~--g-~~-------------~~~l~~~-~~--~~---- 141 (503)
.+||+|||+|+|||+||+.+++ .|. |+|+|+.+.......+ | .+ .+.+... ++ .+
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~-~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~ 79 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALAD-QGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEF 79 (488)
T ss_pred CccEEEECccHHHHHHHHHHHh-CCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHH
Confidence 4799999999999999999999 998 9999998543211111 1 10 0011110 11 00
Q ss_pred hhhh-----cc-CceEEEecCCcc--ccc----CCCccc------cCHHHHHHHHHHHHHh-CCcEEE-EeEEEEEEEeC
Q 010693 142 CLDK-----TW-PMTCVFINDHKT--KYL----DRPYGR------VSRNILKTKLLENCVS-NGVKFH-KAKVWHVNHQE 201 (503)
Q Consensus 142 ~~~~-----~~-~~~~~~~~~~~~--~~~----~~~~~~------v~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~~ 201 (503)
.+.. .| ....+.|..... ... ...+.+ ..-..+.+.|.+.+.+ .|++++ ++.|+++..++
T Consensus 80 ~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~ 159 (488)
T TIGR00551 80 VVSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIET 159 (488)
T ss_pred HHHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeeccC
Confidence 0000 00 011122211100 000 001111 1346788889998887 799999 99999998766
Q ss_pred CEEE-EEeCC-C--cEEEeceEEecCCCCccccc
Q 010693 202 FESS-IVCDD-G--NEIKASLIVDASGFASSFVE 231 (503)
Q Consensus 202 ~~~~-v~~~~-g--~~i~a~~vI~A~G~~s~vr~ 231 (503)
+.+. +.+.+ + ..+.|+.||+|+|..+.+..
T Consensus 160 g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~~~~ 193 (488)
T TIGR00551 160 GRVVGVWVWNRETVETCHADAVVLATGGAGKLYQ 193 (488)
T ss_pred CEEEEEEEEECCcEEEEEcCEEEECCCcccCCCC
Confidence 6443 43332 3 36899999999999886543
No 138
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.85 E-value=2.6e-08 Score=107.28 Aligned_cols=59 Identities=24% Similarity=0.316 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEE-EE---eCCCc--EEEeceEEecCCCCcccc
Q 010693 172 NILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESS-IV---CDDGN--EIKASLIVDASGFASSFV 230 (503)
Q Consensus 172 ~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~-v~---~~~g~--~i~a~~vI~A~G~~s~vr 230 (503)
..+...|.+.+.+.|++++ ++.|+++..+++.+. |. ..+|+ .+.|+.||+|+|..+.+.
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~~~ 194 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRIY 194 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCcccCCC
Confidence 4677888888888899999 999999988766543 22 23564 589999999999877554
No 139
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.85 E-value=4.2e-08 Score=106.11 Aligned_cols=144 Identities=19% Similarity=0.183 Sum_probs=82.7
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccC--CCcEEEEcCCCCCCCCCcc-cc---------------hhHh-hhhc-Cc--hh
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRH--SVKVCCVDPSPLSTWPNNY-GV---------------WVDE-FEDI-GL--VD 141 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~--G~~V~viE~~~~~~~~~~~-g~---------------~~~~-l~~~-~~--~~ 141 (503)
..+||+|||||+|||+||+.+++ . |.+|+|||+.+........ |. +.+. +... ++ .+
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae-~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~ 88 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKE-WAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVRED 88 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHH-hCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHH
Confidence 46899999999999999999999 8 9999999998642211100 10 0000 0000 00 00
Q ss_pred hhh----h-----cc-CceEEEecCCc-ccccCCC--ccccCHHHHHHHHHHHHHhCC-cEEE-EeEEEEEEEeCCEEE-
Q 010693 142 CLD----K-----TW-PMTCVFINDHK-TKYLDRP--YGRVSRNILKTKLLENCVSNG-VKFH-KAKVWHVNHQEFESS- 205 (503)
Q Consensus 142 ~~~----~-----~~-~~~~~~~~~~~-~~~~~~~--~~~v~r~~l~~~L~~~~~~~g-v~~~-~~~v~~i~~~~~~~~- 205 (503)
.+. . .| ....+.|.... ....... ...+....+...|.+.+++.| ++++ ++.|+++..+++.+.
T Consensus 89 lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~G 168 (608)
T PRK06854 89 LVYDIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIAG 168 (608)
T ss_pred HHHHHHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEE
Confidence 000 0 00 01111121100 0000000 001345677788888887765 9999 999999987666432
Q ss_pred E---EeCCCc--EEEeceEEecCCCCcc
Q 010693 206 I---VCDDGN--EIKASLIVDASGFASS 228 (503)
Q Consensus 206 v---~~~~g~--~i~a~~vI~A~G~~s~ 228 (503)
| ...+|+ .+.|+.||+|+|..+.
T Consensus 169 v~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 169 AVGFSVRENKFYVFKAKAVIVATGGAAG 196 (608)
T ss_pred EEEEEccCCcEEEEECCEEEECCCchhh
Confidence 2 223454 6899999999997664
No 140
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.85 E-value=2e-08 Score=103.08 Aligned_cols=141 Identities=18% Similarity=0.149 Sum_probs=88.2
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCccccc
Q 010693 83 RIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYL 162 (503)
Q Consensus 83 ~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (503)
+..-+|+|||||||||++|..|.+ .|++|+|+||.+..+.--.+..-.+.. ..-+-+.+....+.....+.+-.-..
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~-~g~~v~vfEr~~~iGGlW~y~~~~~~~-~ss~Y~~l~tn~pKe~~~~~dfpf~~- 80 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLR-EGHEVVVFERTDDIGGLWKYTENVEVV-HSSVYKSLRTNLPKEMMGYSDFPFPE- 80 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHH-CCCCceEEEecCCccceEeecCccccc-ccchhhhhhccCChhhhcCCCCCCcc-
Confidence 346789999999999999999999 999999999986554211111000000 00000000001111111111110000
Q ss_pred CCCccccCHHHHHHHHHHHHHhCCc--EEE-EeEEEEEEEeC-CEEEEEeCCC----cEEEeceEEecCCCC
Q 010693 163 DRPYGRVSRNILKTKLLENCVSNGV--KFH-KAKVWHVNHQE-FESSIVCDDG----NEIKASLIVDASGFA 226 (503)
Q Consensus 163 ~~~~~~v~r~~l~~~L~~~~~~~gv--~~~-~~~v~~i~~~~-~~~~v~~~~g----~~i~a~~vI~A~G~~ 226 (503)
..+-...++..+.++|..-|..-+. .+. +++|..++..+ +.|.|.+.++ .+..+|.||.|+|++
T Consensus 81 ~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~ 152 (448)
T KOG1399|consen 81 RDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHY 152 (448)
T ss_pred cCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCc
Confidence 0111125677999999999988775 466 88899998888 7999988664 368899999999998
No 141
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.85 E-value=1.9e-08 Score=103.74 Aligned_cols=139 Identities=20% Similarity=0.239 Sum_probs=80.4
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC-CCCCCCcccchhH--hhhhcCchhhhhhccCceEEEecCCcc
Q 010693 83 RIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP-LSTWPNNYGVWVD--EFEDIGLVDCLDKTWPMTCVFINDHKT 159 (503)
Q Consensus 83 ~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~-~~~~~~~~g~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (503)
+.+||++||||||+|..+|..+++ .|.+|+++|+.+ -.+..-++|+-.. .+....+...+.+.-....+.....
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~-~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~-- 78 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQ-LGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVP-- 78 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHh-CCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCC--
Confidence 357999999999999999999999 999999999984 4444445565322 1222211111111100111211111
Q ss_pred cccCCCccc-cCH-----HHHHHHHHHHHHhCCcEEEE--eEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCccccc
Q 010693 160 KYLDRPYGR-VSR-----NILKTKLLENCVSNGVKFHK--AKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSFVE 231 (503)
Q Consensus 160 ~~~~~~~~~-v~r-----~~l~~~L~~~~~~~gv~~~~--~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~vr~ 231 (503)
.-.+.. +.| ..+...+....+++||+++. +++.+ +..+.|...+.++++++.+|.|+|.++....
T Consensus 79 ---~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~----~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~ 151 (454)
T COG1249 79 ---KIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVD----PHTVEVTGEDKETITADNIIIATGSRPRIPP 151 (454)
T ss_pred ---CcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECC----CCEEEEcCCCceEEEeCEEEEcCCCCCcCCC
Confidence 011111 111 12223334445567999883 45544 4455555443468999999999999876543
No 142
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.84 E-value=2.1e-08 Score=104.70 Aligned_cols=123 Identities=25% Similarity=0.293 Sum_probs=71.2
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCC-C-CCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccc
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLS-T-WPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKY 161 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~-~-~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (503)
.+|||+||||||||+++|..|++ .|.+|+|||+++.. + ...+.|+- +. .. .+.....
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~-~g~~V~liE~~~~~~GG~c~~~gci-P~--k~----~~~~~~~------------- 60 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLAS-AGKKVALVEESKAMYGGTCINIGCI-PT--KT----LLVAAEK------------- 60 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHh-CCCEEEEEecCCcccceeeecCccc-cc--hH----hhhhhhc-------------
Confidence 46999999999999999999999 99999999987531 1 11111221 10 00 0000000
Q ss_pred cCCCccc-cC-H----HHHHHHHHHHHHhCCcEEEEeEEEEEEEeCCEEEEEeCC-CcEEEeceEEecCCCCcccc
Q 010693 162 LDRPYGR-VS-R----NILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDD-GNEIKASLIVDASGFASSFV 230 (503)
Q Consensus 162 ~~~~~~~-v~-r----~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~-g~~i~a~~vI~A~G~~s~vr 230 (503)
...+.. +. + ..+.+...+...+.|++++..++..+ ++..+.+...+ ..++.+|.||.|+|..+...
T Consensus 61 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~--~~~~v~v~~~~~~~~~~~d~vViATGs~~~~p 133 (438)
T PRK07251 61 -NLSFEQVMATKNTVTSRLRGKNYAMLAGSGVDLYDAEAHFV--SNKVIEVQAGDEKIELTAETIVINTGAVSNVL 133 (438)
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc--cCCEEEEeeCCCcEEEEcCEEEEeCCCCCCCC
Confidence 001111 11 1 11223333445668999984444333 24455555433 24799999999999877543
No 143
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.83 E-value=6.7e-08 Score=96.35 Aligned_cols=176 Identities=20% Similarity=0.201 Sum_probs=109.6
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHcc----CCCcEEEEcCCCCCCCC-----------------Cc-------ccchhHh
Q 010693 82 DRIRYDVIIIGTGPAGLRLAEQVSSR----HSVKVCCVDPSPLSTWP-----------------NN-------YGVWVDE 133 (503)
Q Consensus 82 ~~~~~DvvIVGgGpaGl~~A~~La~~----~G~~V~viE~~~~~~~~-----------------~~-------~g~~~~~ 133 (503)
....+|++|||+||+|+.+|+.++.+ ..+++.++|.+.....+ .. +|...+.
T Consensus 15 ~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~~~r~~~~~~~~~~~c~~~~~~~I~~G~GgaG~fs~g 94 (486)
T COG2509 15 MNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDIEQRLCPKDEKKLEKCPKCDPCPIVIGFGGAGLFSDG 94 (486)
T ss_pred hhhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccchhhhhccccccchhhcCCCCCceeEeccccccccccc
Confidence 34579999999999999999999962 26899999987433110 00 1111110
Q ss_pred ----------------------hhhcCc--hhhhhhccCceEEEecCCcccc-c---------------CCCccccCHHH
Q 010693 134 ----------------------FEDIGL--VDCLDKTWPMTCVFINDHKTKY-L---------------DRPYGRVSRNI 173 (503)
Q Consensus 134 ----------------------l~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~---------------~~~~~~v~r~~ 173 (503)
++...+ +..+++..++...+.+...... . .+..+.-....
T Consensus 95 ~lnl~P~~Gg~~~~~~~d~~~~~~~~~~vd~~~vqfG~~g~~~~~~~~e~ikd~e~~aa~a~~eil~~~~rHiGTD~l~~ 174 (486)
T COG2509 95 ILNLRPIRGGDVHERTKDTDEFWELVNLVDESNVQFGAPGAGTFSDLTEQIKDIEFRAAGAGEEILPIYQRHIGTDILPK 174 (486)
T ss_pred ceecccccccchhhhhCChHHHHHHHhccchhheecCCCcCcccCCchhhhhHHHHHHhCCCceeeeccccccCccchHH
Confidence 000000 2223334444455444211100 0 01122223467
Q ss_pred HHHHHHHHHHhCCcEEE-EeEEEEEEEeCC-EEEEEeCCCcEEEeceEEecCCCCcc-----cccccCCCCCccceeEEE
Q 010693 174 LKTKLLENCVSNGVKFH-KAKVWHVNHQEF-ESSIVCDDGNEIKASLIVDASGFASS-----FVEYDKPRNHGYQIAHGI 246 (503)
Q Consensus 174 l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~-~~~v~~~~g~~i~a~~vI~A~G~~s~-----vr~~~~~~~~~~~~~~g~ 246 (503)
+.+.+++.+++.|++++ +++|.+++.+++ ...|.+++|.++.+|.||.|-|+++. +.+..+.....-+...|+
T Consensus 175 vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~dw~~~l~~K~Gv~~~~~p~dIGV 254 (486)
T COG2509 175 VVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGRDWFEMLHKKLGVKMRAKPFDIGV 254 (486)
T ss_pred HHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcchHHHHHHHHHhcCcccccCCeeEEE
Confidence 88899999999999999 999999999877 46778888999999999999999873 111122222333556788
Q ss_pred EEEecCCCCCC
Q 010693 247 LAEVESHPFDL 257 (503)
Q Consensus 247 ~~~~~~~~~~~ 257 (503)
.++.+...+++
T Consensus 255 RvE~p~~vmd~ 265 (486)
T COG2509 255 RVEHPQSVMDP 265 (486)
T ss_pred EEecchHhhCc
Confidence 88877555544
No 144
>PLN02546 glutathione reductase
Probab=98.82 E-value=2.9e-08 Score=105.82 Aligned_cols=137 Identities=13% Similarity=0.095 Sum_probs=77.2
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCC----------CCCCCCCcccchhHh--hhhcCchhhhhhccCce
Q 010693 83 RIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPS----------PLSTWPNNYGVWVDE--FEDIGLVDCLDKTWPMT 150 (503)
Q Consensus 83 ~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~----------~~~~~~~~~g~~~~~--l~~~~~~~~~~~~~~~~ 150 (503)
..+|||+||||||+|..+|..+++ .|.+|+|+|+. .-.+..-++|+-... +....+...+... ...
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~-~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~-~~~ 154 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASN-FGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEES-RGF 154 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH-CCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhh-hhc
Confidence 457999999999999999999999 99999999951 112222333442221 1111111111110 000
Q ss_pred EEEecCCcccccCCCccc-cC-----HHHHHHHHHHHHHhCCcEEEEeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCC
Q 010693 151 CVFINDHKTKYLDRPYGR-VS-----RNILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDDGNEIKASLIVDASG 224 (503)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~-v~-----r~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G 224 (503)
.+..... ..-.+.. +. ...+...+.+.+.+.|++++..+++.++. ..+.+ +|+++.+|.||.|+|
T Consensus 155 g~~~~~~----~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~--~~V~v---~G~~~~~D~LVIATG 225 (558)
T PLN02546 155 GWKYETE----PKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDP--HTVDV---DGKLYTARNILIAVG 225 (558)
T ss_pred CcccCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccC--CEEEE---CCEEEECCEEEEeCC
Confidence 1100000 0011111 11 12344455566677899999666665543 23333 577899999999999
Q ss_pred CCcccc
Q 010693 225 FASSFV 230 (503)
Q Consensus 225 ~~s~vr 230 (503)
......
T Consensus 226 s~p~~P 231 (558)
T PLN02546 226 GRPFIP 231 (558)
T ss_pred CCCCCC
Confidence 877543
No 145
>PRK07121 hypothetical protein; Validated
Probab=98.81 E-value=1e-07 Score=101.01 Aligned_cols=57 Identities=18% Similarity=0.193 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeC-CEE-EEEeC-CCc--EEEe-ceEEecCCCCc
Q 010693 171 RNILKTKLLENCVSNGVKFH-KAKVWHVNHQE-FES-SIVCD-DGN--EIKA-SLIVDASGFAS 227 (503)
Q Consensus 171 r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~-~~~-~v~~~-~g~--~i~a-~~vI~A~G~~s 227 (503)
-..+.+.|.+.+++.|++++ +++|+++..++ +.+ .|... +++ ++.| +.||+|+|..+
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcC
Confidence 45688889999999999999 99999998764 332 23332 333 5889 99999999665
No 146
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.81 E-value=4.2e-08 Score=101.94 Aligned_cols=143 Identities=15% Similarity=0.210 Sum_probs=80.2
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcc---cch--------h----HhhhhcCc---hhhh--
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNY---GVW--------V----DEFEDIGL---VDCL-- 143 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~---g~~--------~----~~l~~~~~---~~~~-- 143 (503)
.++||||||+|.|||+||+.+ . .|.+|+|||+.+.......+ |.+ . +.+..... .+.+
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a-~-~G~~V~lleK~~~~gg~s~~a~ggi~~~~~~d~~~~~~~d~~~~g~~~~d~~lv~~ 80 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNL-R-KDLKILMVSKGKLNECNTYLAQGGISVARNKDDITSFVEDTLKAGQYENNLEAVKI 80 (433)
T ss_pred ccccEEEECchHHHHHHHHHh-c-cCCCEEEEecCCCCCCchHHHhHhheeCCCCCCHHHHHHHHHHHhCCCCCHHHHHH
Confidence 468999999999999999997 5 69999999998654322111 111 0 00100000 0000
Q ss_pred --hh-----ccC-ceEEEecCCc-cccc----CCCccc------cCHHHHHHHHHHHHHh-CCcEEE-EeEEEEEEEeCC
Q 010693 144 --DK-----TWP-MTCVFINDHK-TKYL----DRPYGR------VSRNILKTKLLENCVS-NGVKFH-KAKVWHVNHQEF 202 (503)
Q Consensus 144 --~~-----~~~-~~~~~~~~~~-~~~~----~~~~~~------v~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~~~ 202 (503)
.. .|- ...+.|.... .... .....+ .....+.+.|.+.+.+ .||+++ +++|+++..+++
T Consensus 81 ~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~ 160 (433)
T PRK06175 81 LANESIENINKLIDMGLNFDKDEKELSYTKEGAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIENDN 160 (433)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCceeeeccCccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEecCC
Confidence 00 010 0111111100 0000 000001 1235677888888765 699999 999999987666
Q ss_pred EEE-EE-eCCCc--EEEeceEEecCCCCcc
Q 010693 203 ESS-IV-CDDGN--EIKASLIVDASGFASS 228 (503)
Q Consensus 203 ~~~-v~-~~~g~--~i~a~~vI~A~G~~s~ 228 (503)
.+. |. ..++. ++.|+.||+|+|..+.
T Consensus 161 ~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~~ 190 (433)
T PRK06175 161 TCIGAICLKDNKQINIYSKVTILATGGIGG 190 (433)
T ss_pred EEEEEEEEECCcEEEEEcCeEEEccCcccc
Confidence 432 22 23444 5899999999997654
No 147
>PRK13748 putative mercuric reductase; Provisional
Probab=98.79 E-value=4.4e-08 Score=105.64 Aligned_cols=138 Identities=12% Similarity=0.109 Sum_probs=76.0
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHh--hhhcCchhhhhhccCceEEEecCCcc-c
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDE--FEDIGLVDCLDKTWPMTCVFINDHKT-K 160 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~-~ 160 (503)
..|||+||||||||+++|..|++ .|.+|+|||++...+...++|+.... +....+...... . .++.+.. .
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~-~G~~v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~----~--~~~~g~~~~ 169 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVE-QGARVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRE----S--PFDGGIAAT 169 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHh-CCCeEEEEecCcceeeccccCccccHHHHHHHHHHHHHhc----c--cccCCccCC
Confidence 46999999999999999999999 99999999987433333344442211 111111111100 0 0000000 0
Q ss_pred ccCCCcccc-CH-HHHHHHH-----HHHHHhC-CcEEEEeEEEEEEEeCCEEEEEeCCCc--EEEeceEEecCCCCcccc
Q 010693 161 YLDRPYGRV-SR-NILKTKL-----LENCVSN-GVKFHKAKVWHVNHQEFESSIVCDDGN--EIKASLIVDASGFASSFV 230 (503)
Q Consensus 161 ~~~~~~~~v-~r-~~l~~~L-----~~~~~~~-gv~~~~~~v~~i~~~~~~~~v~~~~g~--~i~a~~vI~A~G~~s~vr 230 (503)
.....+..+ .+ ......+ .+.+.+. |++++..++..++ ...+.|.+.+|+ ++++|.||.|+|....+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~--~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p 247 (561)
T PRK13748 170 VPTIDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKD--DQTLIVRLNDGGERVVAFDRCLIATGASPAVP 247 (561)
T ss_pred CCccCHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEec--CCEEEEEeCCCceEEEEcCEEEEcCCCCCCCC
Confidence 000011111 11 1111111 1223343 7898855665543 456777776664 699999999999877543
No 148
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.79 E-value=6.4e-08 Score=105.11 Aligned_cols=39 Identities=26% Similarity=0.380 Sum_probs=34.6
Q ss_pred CCCCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCC
Q 010693 81 SDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPL 120 (503)
Q Consensus 81 ~~~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~ 120 (503)
....++||+|||+|.|||+||+.+++ .|.+|+|||+...
T Consensus 31 ~~~~~~DVlVVG~G~AGl~AAi~Aae-~G~~VilieK~~~ 69 (640)
T PRK07573 31 ANKRKFDVIVVGTGLAGASAAATLGE-LGYNVKVFCYQDS 69 (640)
T ss_pred ccccccCEEEECccHHHHHHHHHHHH-cCCcEEEEecCCC
Confidence 34467999999999999999999999 9999999997544
No 149
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.79 E-value=4.8e-08 Score=105.14 Aligned_cols=146 Identities=17% Similarity=0.120 Sum_probs=83.6
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccC--CCcEEEEcCCCCCCCCCcc--c-ch-------------hHhhhhc-Cc--hhh
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRH--SVKVCCVDPSPLSTWPNNY--G-VW-------------VDEFEDI-GL--VDC 142 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~--G~~V~viE~~~~~~~~~~~--g-~~-------------~~~l~~~-~~--~~~ 142 (503)
..+||+|||+|.|||+||+.+++ . |.+|+|+|+.+.......+ | .+ .+.+..- ++ .+.
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~-~g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~~d~~~ 81 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAE-ANPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCEQDV 81 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHH-hCCCCcEEEEEccCCCCCChhhccchhhhhcCCCCCHHHHHHHHHHhcccCCCHHH
Confidence 46899999999999999999998 6 5899999997543221111 1 10 0001000 01 001
Q ss_pred h----hh-----cc-CceEEEecCCcc--c---ccC-CCcc---c-c--CHHHHHHHHHHHHHh-CCcEEE-EeEEEEEE
Q 010693 143 L----DK-----TW-PMTCVFINDHKT--K---YLD-RPYG---R-V--SRNILKTKLLENCVS-NGVKFH-KAKVWHVN 198 (503)
Q Consensus 143 ~----~~-----~~-~~~~~~~~~~~~--~---~~~-~~~~---~-v--~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~ 198 (503)
+ +. .| ....+.|+.... . ... ..+. + . .-..+...|.+.+.+ .|++++ ++.++++.
T Consensus 82 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li 161 (582)
T PRK09231 82 VEYFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFVLDIL 161 (582)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccCCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcEEEeCeEEEEEE
Confidence 0 00 00 111222211000 0 000 0000 0 1 124677788887766 489998 99999998
Q ss_pred EeCCEEE----EEeCCCc--EEEeceEEecCCCCcccc
Q 010693 199 HQEFESS----IVCDDGN--EIKASLIVDASGFASSFV 230 (503)
Q Consensus 199 ~~~~~~~----v~~~~g~--~i~a~~vI~A~G~~s~vr 230 (503)
.+++.+. +...+|. .+.|+.||.|||..+.+-
T Consensus 162 ~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l~ 199 (582)
T PRK09231 162 VDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVY 199 (582)
T ss_pred EeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCCC
Confidence 8766543 2234563 689999999999888664
No 150
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.78 E-value=3.7e-08 Score=103.65 Aligned_cols=135 Identities=16% Similarity=0.170 Sum_probs=72.3
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHh--hhhcCchhhhhhccCceEEEecCCccccc
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDE--FEDIGLVDCLDKTWPMTCVFINDHKTKYL 162 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (503)
+|||+||||||||+++|..|++ .|.+|+|||++...+...++|+.... +....+...+........+ .. ..
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~-~G~~V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi--~~----~~ 76 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQ-LGLKTAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGI--SG----EV 76 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHh-CCCeEEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCC--Cc----Cc
Confidence 5999999999999999999999 99999999986444443444432111 1111111111100000000 00 00
Q ss_pred CCCccc-cC-HHHH----HHHHHHHHHhCCcEEEEeEEEEEEEeCCEEEEEeCCCc--EEEeceEEecCCCCcc
Q 010693 163 DRPYGR-VS-RNIL----KTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDDGN--EIKASLIVDASGFASS 228 (503)
Q Consensus 163 ~~~~~~-v~-r~~l----~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g~--~i~a~~vI~A~G~~s~ 228 (503)
...+.. .. ++.+ ...+.......+++.+..+..-+ +...+.|...+|+ ++++|.||.|+|....
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~--~~~~v~v~~~~g~~~~~~~d~lViATGs~p~ 148 (466)
T PRK07818 77 TFDYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFT--DANTLEVDLNDGGTETVTFDNAIIATGSSTR 148 (466)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc--CCCEEEEEecCCCeeEEEcCEEEEeCCCCCC
Confidence 011111 11 1111 12222233346777763332222 2446667666653 6999999999998764
No 151
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.77 E-value=1.1e-08 Score=103.89 Aligned_cols=140 Identities=20% Similarity=0.245 Sum_probs=95.0
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcc---------cchhHhhhhcCchhhhhhccCceEEEe
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNY---------GVWVDEFEDIGLVDCLDKTWPMTCVFI 154 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~---------g~~~~~l~~~~~~~~~~~~~~~~~~~~ 154 (503)
..|||+|||||-||+-||++.|| .|.+++++--+......-.| |....+++++|=. .........+.+
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaAR-mG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~--Mg~~~D~~~IQ~ 79 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAAR-MGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGL--MGKAADKAGIQF 79 (621)
T ss_pred CCCceEEECCCccchHHHHhhhc-cCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccch--HHHhhhhcCCch
Confidence 35999999999999999999999 99999999865432211122 1122334444320 011111112222
Q ss_pred ---cCCcccccCCCccccCHHHHHHHHHHHHHh-CCcEEEEeEEEEEEEeCC--EEEEEeCCCcEEEeceEEecCCCC
Q 010693 155 ---NDHKTKYLDRPYGRVSRNILKTKLLENCVS-NGVKFHKAKVWHVNHQEF--ESSIVCDDGNEIKASLIVDASGFA 226 (503)
Q Consensus 155 ---~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~-~gv~~~~~~v~~i~~~~~--~~~v~~~~g~~i~a~~vI~A~G~~ 226 (503)
+.........+.+++|+..+...+.+.++. .+.++++..|+++..+++ .+.|++.+|..+.|+.||.++|..
T Consensus 80 r~LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTF 157 (621)
T COG0445 80 RMLNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTF 157 (621)
T ss_pred hhccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeeccc
Confidence 122222333455568888888888888877 778898999999988665 467888999999999999999953
No 152
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.77 E-value=3.5e-08 Score=103.80 Aligned_cols=135 Identities=19% Similarity=0.231 Sum_probs=74.2
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhH-h-hhhcCchhhhhhccCceEEEecCCccccc
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVD-E-FEDIGLVDCLDKTWPMTCVFINDHKTKYL 162 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~-~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (503)
.|||+||||||||+++|..|++ .|.+|+|||+....+...++|+... . +....+...+... ....+... ..
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~-~G~~v~lie~~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~-~~~g~~~~-----~~ 73 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQ-LGLKVALVEKEYLGGTCLNVGCIPTKALLHSAEVYDEIKHA-KDYGIEVE-----NV 73 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHh-CCCeEEEEecCCCCCceeecCccchHHHHHHhhHHHHHHHH-HhcCCCCC-----CC
Confidence 4899999999999999999999 9999999998332332223333111 0 1111111111100 00000000 00
Q ss_pred CCCcccc-CH-----HHHHHHHHHHHHhCCcEEEEeEEEEEEEeCCEEEEEeCCC-cEEEeceEEecCCCCcc
Q 010693 163 DRPYGRV-SR-----NILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDDG-NEIKASLIVDASGFASS 228 (503)
Q Consensus 163 ~~~~~~v-~r-----~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g-~~i~a~~vI~A~G~~s~ 228 (503)
.-++..+ .+ ..+...+...+.+.|++++..++..++ ...+.+...+| .++++|.||.|+|....
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~--~~~~~v~~~~g~~~~~~d~lVlAtG~~p~ 144 (461)
T TIGR01350 74 SVDWEKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLD--PGTVLVTGENGEETLTAKNIIIATGSRPR 144 (461)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc--CCEEEEecCCCcEEEEeCEEEEcCCCCCC
Confidence 0011111 11 122233344555689999855554443 44666766665 47999999999997654
No 153
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.77 E-value=5.7e-08 Score=105.15 Aligned_cols=144 Identities=19% Similarity=0.205 Sum_probs=83.5
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcc---cch-----------h----Hhhhh-cCc--hhh
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNY---GVW-----------V----DEFED-IGL--VDC 142 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~---g~~-----------~----~~l~~-~~~--~~~ 142 (503)
.++||+|||+|.|||+||+.+++ .|.+|+|+|+.+.......+ |.+ . +.+.. .++ .+.
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~-~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~l 106 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVE-LGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDA 106 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHH-cCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHH
Confidence 46999999999999999999999 99999999998653211110 110 0 00000 011 000
Q ss_pred ----hhh-----cc-CceEEEec---CCc---------cccc--CCCccc----c--CHHHHHHHHHHHHHhCCcEEE-E
Q 010693 143 ----LDK-----TW-PMTCVFIN---DHK---------TKYL--DRPYGR----V--SRNILKTKLLENCVSNGVKFH-K 191 (503)
Q Consensus 143 ----~~~-----~~-~~~~~~~~---~~~---------~~~~--~~~~~~----v--~r~~l~~~L~~~~~~~gv~~~-~ 191 (503)
++. .| ....+.|+ ++. .... .....+ . .-..+...|.+.+++.|++++ +
T Consensus 107 v~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~ 186 (617)
T PTZ00139 107 IQYMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDCNFFIE 186 (617)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCCEEEec
Confidence 000 01 01111111 100 0000 000001 1 135788899999989999999 9
Q ss_pred eEEEEEEE-eCCEEE-EE---eCCCc--EEEeceEEecCCCCcc
Q 010693 192 AKVWHVNH-QEFESS-IV---CDDGN--EIKASLIVDASGFASS 228 (503)
Q Consensus 192 ~~v~~i~~-~~~~~~-v~---~~~g~--~i~a~~vI~A~G~~s~ 228 (503)
+.++++.. +++.+. |. ..+|+ .+.|+.||+|+|..+.
T Consensus 187 ~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 230 (617)
T PTZ00139 187 YFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGR 230 (617)
T ss_pred eEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCcc
Confidence 99999887 455332 22 23554 6899999999987654
No 154
>PRK09897 hypothetical protein; Provisional
Probab=98.77 E-value=1.2e-07 Score=99.94 Aligned_cols=140 Identities=14% Similarity=0.128 Sum_probs=79.3
Q ss_pred CcEEEECCCHHHHHHHHHHHccCC--CcEEEEcCCCCCCCCCcccc-h--hHhhhh-----cCchhhhhhccCceEE--E
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHS--VKVCCVDPSPLSTWPNNYGV-W--VDEFED-----IGLVDCLDKTWPMTCV--F 153 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G--~~V~viE~~~~~~~~~~~g~-~--~~~l~~-----~~~~~~~~~~~~~~~~--~ 153 (503)
.+|+||||||+|+++|..|.+ .+ ++|+|||+++..+....|.. . ...+.. .......-..|..... .
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~-~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~ 80 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQ-QQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSH 80 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHh-cCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHH
Confidence 589999999999999999987 44 69999999766553332221 0 000000 0000000011211100 0
Q ss_pred ecC--CcccccCCCccccCH-------HHHHHHHHHHHHhCC--cEEE-EeEEEEEEEeCCEEEEEeCC-CcEEEeceEE
Q 010693 154 IND--HKTKYLDRPYGRVSR-------NILKTKLLENCVSNG--VKFH-KAKVWHVNHQEFESSIVCDD-GNEIKASLIV 220 (503)
Q Consensus 154 ~~~--~~~~~~~~~~~~v~r-------~~l~~~L~~~~~~~g--v~~~-~~~v~~i~~~~~~~~v~~~~-g~~i~a~~vI 220 (503)
+.. ....... +..++.| +...+.+.+.+.+.| ++++ +++|+++..+++++.|.+.+ |..+.||.||
T Consensus 81 ~~~~g~~~~~l~-~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VV 159 (534)
T PRK09897 81 LQRYGVKKETLH-DRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAV 159 (534)
T ss_pred HHhcCCcceeec-CCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEE
Confidence 000 0000000 1011222 222333445556666 6777 78999999988888888865 4679999999
Q ss_pred ecCCCCc
Q 010693 221 DASGFAS 227 (503)
Q Consensus 221 ~A~G~~s 227 (503)
.|+|+..
T Consensus 160 LAtGh~~ 166 (534)
T PRK09897 160 IATGHVW 166 (534)
T ss_pred ECCCCCC
Confidence 9999744
No 155
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.77 E-value=8.1e-09 Score=95.63 Aligned_cols=113 Identities=29% Similarity=0.397 Sum_probs=70.5
Q ss_pred cEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhc-CchhhhhhccCceEEEecCCcccccCCC
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDI-GLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
||+||||||||+++|..|++ .|++|+|+|+.+.... ...+.+...+... .......
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~-~~~~v~ii~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--------------------- 57 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR-PGAKVLIIEKSPGTPY-NSGCIPSPLLVEIAPHRHEFL--------------------- 57 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH-TTSEEEEESSSSHHHH-HHSHHHHHHHHHHHHHHHHHH---------------------
T ss_pred CEEEEecHHHHHHHHHHHhc-CCCeEEEEeccccccc-ccccccccccccccccccccc---------------------
Confidence 79999999999999999999 9999999986542111 0011111110000 0000000
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEE-----EE---EeCCCcEEEeceEEecCCCCcc
Q 010693 166 YGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFES-----SI---VCDDGNEIKASLIVDASGFASS 228 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~-----~v---~~~~g~~i~a~~vI~A~G~~s~ 228 (503)
..+.. .+.+.+...+++++ ++++.+++.....+ .+ ...++.++.+|+||.|+|..+.
T Consensus 58 ----~~~~~--~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~ 123 (201)
T PF07992_consen 58 ----PARLF--KLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPR 123 (201)
T ss_dssp ----HHHHG--HHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEE
T ss_pred ----ccccc--ccccccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccc
Confidence 00000 44555556789997 99999998877742 22 2334568999999999996654
No 156
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.76 E-value=2.6e-08 Score=104.74 Aligned_cols=133 Identities=18% Similarity=0.226 Sum_probs=72.9
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhH-h-hhhcCchhhhhhccCceEEEecCCcccccC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVD-E-FEDIGLVDCLDKTWPMTCVFINDHKTKYLD 163 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~-~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (503)
|||+||||||||+.+|..|++ .|.+|+|||+++..+..-++|+... . +....+....... ...+.. . ...
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~-~g~~v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~--~~g~~~--~---~~~ 72 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAE-LGASVAMVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARKP--PFGGLA--A---TVA 72 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCcccCCeeeecEEccHHHHHHHHHHHHhhcc--Cccccc--C---CCc
Confidence 799999999999999999999 9999999998754443333444221 1 1111111111110 000100 0 001
Q ss_pred CCccc-cC-HHHHHHH-----HHHHHHhCCcEEEEeEEEEEEEeCCEEEEEeCCCc-EEEeceEEecCCCCcccc
Q 010693 164 RPYGR-VS-RNILKTK-----LLENCVSNGVKFHKAKVWHVNHQEFESSIVCDDGN-EIKASLIVDASGFASSFV 230 (503)
Q Consensus 164 ~~~~~-v~-r~~l~~~-----L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g~-~i~a~~vI~A~G~~s~vr 230 (503)
..+.. +. ++.+.+. +.+.+++.|++++..++..++ +. +|.+.+|. .+.+|.||.|+|......
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~--~~--~v~v~~g~~~~~~~~lIiATGs~p~~p 143 (463)
T TIGR02053 73 VDFGELLEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKD--PK--TVKVDLGREVRGAKRFLIATGARPAIP 143 (463)
T ss_pred cCHHHHHHHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEcc--CC--EEEEcCCeEEEEeCEEEEcCCCCCCCC
Confidence 11111 11 1222222 334456689999844444332 22 34445554 689999999999876543
No 157
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.76 E-value=2.2e-06 Score=87.81 Aligned_cols=39 Identities=18% Similarity=0.257 Sum_probs=33.2
Q ss_pred CcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCC
Q 010693 186 GVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASG 224 (503)
Q Consensus 186 gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G 224 (503)
.++++ +++|+++..+.....+++.+|.++.+|.||.+.-
T Consensus 226 ~~~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p 265 (444)
T COG1232 226 EAKIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAP 265 (444)
T ss_pred hhceeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCC
Confidence 34477 9999999998777888888999999999999863
No 158
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.76 E-value=1.2e-07 Score=100.64 Aligned_cols=61 Identities=18% Similarity=0.215 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCC-EEEEEeCCCcEEEeceEEecCCCCcccccc
Q 010693 172 NILKTKLLENCVSNGVKFH-KAKVWHVNHQEF-ESSIVCDDGNEIKASLIVDASGFASSFVEY 232 (503)
Q Consensus 172 ~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~-~~~v~~~~g~~i~a~~vI~A~G~~s~vr~~ 232 (503)
..+.+.|.+.+++.|++++ +++|++|..+++ ...|++.+|++++||.||.|.|.+..+.++
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~L 291 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKL 291 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHh
Confidence 4677788889999999999 999999987755 456778888889999999999987665443
No 159
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.76 E-value=7.4e-08 Score=101.28 Aligned_cols=139 Identities=14% Similarity=0.148 Sum_probs=82.0
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhH--hhhhcCchhhhhhccCceEEEecCCcccccC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVD--EFEDIGLVDCLDKTWPMTCVFINDHKTKYLD 163 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (503)
.||+||||||+|+.+|..+++ +|.+|+|+|+++..+...++|+-.. .+....+...+... ....+...... ...
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~-~g~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~-~~~g~~~~~~~--~~~ 77 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQ-LGADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRA-AELGIRFIDDG--EAR 77 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHh-CCCeEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHH-HhCCcccccCc--ccc
Confidence 489999999999999999999 9999999998765444444454211 11111111111110 00011110000 000
Q ss_pred CCcccc----C--HHHHHHHHHHHHHhCCcEEEEeEEEEEE--EeCCEEEEEeCCCc--EEEeceEEecCCCCcc
Q 010693 164 RPYGRV----S--RNILKTKLLENCVSNGVKFHKAKVWHVN--HQEFESSIVCDDGN--EIKASLIVDASGFASS 228 (503)
Q Consensus 164 ~~~~~v----~--r~~l~~~L~~~~~~~gv~~~~~~v~~i~--~~~~~~~v~~~~g~--~i~a~~vI~A~G~~s~ 228 (503)
-.+..+ + ...+.+.+.+.+.+.|++++..++..++ .+++.+.|.+.+|+ ++.+|.||.|+|....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~ 152 (466)
T PRK07845 78 VDLPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPR 152 (466)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCC
Confidence 111111 1 1122344556677789999965665544 45667888877775 7999999999998764
No 160
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.75 E-value=5.8e-08 Score=98.35 Aligned_cols=110 Identities=17% Similarity=0.129 Sum_probs=68.7
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCC---------Ccccchh---HhhhhcCchhhhhhccCceEE
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWP---------NNYGVWV---DEFEDIGLVDCLDKTWPMTCV 152 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~---------~~~g~~~---~~l~~~~~~~~~~~~~~~~~~ 152 (503)
..||+|||||++|+.+|++|++ .|++|+|+|+++....+ ..|.... ..+...|+...-...+....+
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr-~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~Gll~~em~~lgsl~~ 80 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAK-RGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAVGLLKEEMRRLGSLIM 80 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHh-CCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcCCchHHHHHHhcchhe
Confidence 3599999999999999999999 99999999987654322 1111111 122344442211122222222
Q ss_pred EecCCcccccCCCcc--ccCHHHHHHHHHHHHHh-CCcEEEEeEEEEEE
Q 010693 153 FINDHKTKYLDRPYG--RVSRNILKTKLLENCVS-NGVKFHKAKVWHVN 198 (503)
Q Consensus 153 ~~~~~~~~~~~~~~~--~v~r~~l~~~L~~~~~~-~gv~~~~~~v~~i~ 198 (503)
.......+ ...+ .++|..+.+.|.+.+.+ .+++++..+|+++.
T Consensus 81 --~aad~~~v-PA~gaLvvdR~~~~~~L~~~L~~~pnI~l~~~eV~~l~ 126 (436)
T PRK05335 81 --EAADAHRV-PAGGALAVDREGFSEYVTEALENHPLITVIREEVTEIP 126 (436)
T ss_pred --ecccccCC-CCccceecCHHHHHHHHHHHHHcCCCcEEEccchhccc
Confidence 11111111 1222 37899999999999877 67998877888875
No 161
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.75 E-value=5.8e-08 Score=102.76 Aligned_cols=133 Identities=20% Similarity=0.286 Sum_probs=81.7
Q ss_pred cEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhh-hcC---chhhhhhccCceEEEecCCccccc
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFE-DIG---LVDCLDKTWPMTCVFINDHKTKYL 162 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 162 (503)
.|+|||||++||++|..|.+ .|++|+++|+.+..+ |.|.-.-. .-+ +.+.+....+.....+.+. ..
T Consensus 3 rVaVIGaG~sGL~a~k~l~e-~g~~~~~fE~~~~iG-----G~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdf---p~ 73 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLE-EGLEVTCFEKSDDIG-----GLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDF---PF 73 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHH-TT-EEEEEESSSSSS-----GGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS----H
T ss_pred EEEEECccHHHHHHHHHHHH-CCCCCeEEecCCCCC-----ccCeeCCcCCCCccccccceEEeeCchHhcCCCc---CC
Confidence 69999999999999999999 999999999876543 34431100 000 0000000000000111111 01
Q ss_pred CCCcc-ccCHHHHHHHHHHHHHhCCc--EEE-EeEEEEEEEeC-----CEEEEEeCCC-c--EEEeceEEecCCCCcc
Q 010693 163 DRPYG-RVSRNILKTKLLENCVSNGV--KFH-KAKVWHVNHQE-----FESSIVCDDG-N--EIKASLIVDASGFASS 228 (503)
Q Consensus 163 ~~~~~-~v~r~~l~~~L~~~~~~~gv--~~~-~~~v~~i~~~~-----~~~~v~~~~g-~--~i~a~~vI~A~G~~s~ 228 (503)
+..+. +..+..+.++|..-++.-+. .++ +++|++++..+ +++.|++.++ + +-..|.||.|+|..+.
T Consensus 74 p~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~ 151 (531)
T PF00743_consen 74 PEDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSK 151 (531)
T ss_dssp CCCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCC
Confidence 11111 36789999999999998775 477 99999998864 3788888653 2 4568999999998873
No 162
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.75 E-value=7.6e-08 Score=98.10 Aligned_cols=110 Identities=21% Similarity=0.167 Sum_probs=65.4
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCc---------ccch---hHhhhhcCchhhhhhccCceEEE
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNN---------YGVW---VDEFEDIGLVDCLDKTWPMTCVF 153 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~---------~g~~---~~~l~~~~~~~~~~~~~~~~~~~ 153 (503)
.||+|||||+||+.+|++|++ .|++|+|||+++....+.. |... ...+...|+...-...++...+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr-~G~~V~LiE~rp~~~~p~~~~~~~~elvcs~Slgg~~l~~a~Gil~~ei~~lg~l~~~ 79 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQ-AGVPVILYEMRPEKLTPAHHTEDLAELVCSNSLGAKALDRAAGLLKTEMRQLSSLIIT 79 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHh-CCCcEEEEeccccccCchhhhhhhhhhcccccccchhHHhccCcHHHHHhhcCeeeee
Confidence 489999999999999999999 9999999998766432211 1000 01112233311111122222222
Q ss_pred ecCCcccccCC-CccccCHHHHHHHHHHHHHh-CCcEEEEeEEEEEE
Q 010693 154 INDHKTKYLDR-PYGRVSRNILKTKLLENCVS-NGVKFHKAKVWHVN 198 (503)
Q Consensus 154 ~~~~~~~~~~~-~~~~v~r~~l~~~L~~~~~~-~gv~~~~~~v~~i~ 198 (503)
..+.. .+.. ....++|..+.+.+.+++.+ .++++.+.+|+++.
T Consensus 80 ~ad~~--~Ipagg~~~vDR~lF~~~L~~qLe~~pnItviq~eV~dL~ 124 (433)
T TIGR00137 80 AADRH--AVPAGGALAVDRGIFSRSLTEQVASHPNVTLIREEVTEIP 124 (433)
T ss_pred hhhhh--CCCCCceEEehHHHHHHHHHHHHHhCCCcEEEeeeeEEEc
Confidence 11111 1111 11136899999999998877 56777777777765
No 163
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.75 E-value=1.7e-07 Score=100.71 Aligned_cols=145 Identities=23% Similarity=0.259 Sum_probs=84.0
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcc--c-ch--h---------------Hhhhhc-Cc--h
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNY--G-VW--V---------------DEFEDI-GL--V 140 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~--g-~~--~---------------~~l~~~-~~--~ 140 (503)
..+||+|||+|.||++||+.+++ .|.+|+|+|+.+.......+ | .+ . +.+... ++ .
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae-~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~ 82 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIAS-AGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQ 82 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHH-CCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCH
Confidence 56899999999999999999999 99999999987543211111 1 11 0 000000 00 0
Q ss_pred hhh----hh-----cc-CceEEEecCCcc-----cccC-CCccc------cCHHHHHHHHHHHHHhCCcEEE-EeEEEEE
Q 010693 141 DCL----DK-----TW-PMTCVFINDHKT-----KYLD-RPYGR------VSRNILKTKLLENCVSNGVKFH-KAKVWHV 197 (503)
Q Consensus 141 ~~~----~~-----~~-~~~~~~~~~~~~-----~~~~-~~~~~------v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i 197 (503)
+.+ .. .| ....+.|+.... .... ..+.+ -.-..+...|.+.+.+.||+++ ++.++++
T Consensus 83 ~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~~~~L 162 (566)
T PRK06452 83 DAAELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVDFYNEWFSLDL 162 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCEEEeCcEEEEE
Confidence 000 00 01 011122211000 0000 00111 1235677788888888899999 9999999
Q ss_pred EEeCCEEE-EEe---CCCc--EEEeceEEecCCCCccc
Q 010693 198 NHQEFESS-IVC---DDGN--EIKASLIVDASGFASSF 229 (503)
Q Consensus 198 ~~~~~~~~-v~~---~~g~--~i~a~~vI~A~G~~s~v 229 (503)
..+++.+. |.. .+|+ .+.|+.||.|+|..+.+
T Consensus 163 i~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~l 200 (566)
T PRK06452 163 VTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMGML 200 (566)
T ss_pred EEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccccc
Confidence 98766443 332 2333 58999999999977644
No 164
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.74 E-value=6.6e-06 Score=86.36 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=32.2
Q ss_pred cEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCC
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLST 122 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~ 122 (503)
+|+|||||++||++|+.|++ +|++|+|+|+.+..+
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~-~G~~v~vlE~~~~~G 35 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLAD-AGHTPIVLEARDVLG 35 (453)
T ss_pred CEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCCCC
Confidence 58999999999999999999 999999999987643
No 165
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.74 E-value=1.7e-07 Score=101.02 Aligned_cols=146 Identities=20% Similarity=0.225 Sum_probs=83.1
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCC---CcEEEEcCCCCCCCCCcc---cch---h------------Hhhhhc-Cc--
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHS---VKVCCVDPSPLSTWPNNY---GVW---V------------DEFEDI-GL-- 139 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G---~~V~viE~~~~~~~~~~~---g~~---~------------~~l~~~-~~-- 139 (503)
.++||+|||+|+|||+||+.+++ .| .+|+|+|+.+.......+ |.+ . +.+... ++
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~-~G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~g~~~~d 82 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAE-RSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGSDFLAD 82 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHH-hCCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHHhhcccCC
Confidence 46899999999999999999999 98 899999987653221111 110 0 000000 00
Q ss_pred hhh----hhh-----cc-CceEEEec---CCcc--ccc-CCCcccc------CHHHHHHHHHHHHHh-CCcEEE-EeEEE
Q 010693 140 VDC----LDK-----TW-PMTCVFIN---DHKT--KYL-DRPYGRV------SRNILKTKLLENCVS-NGVKFH-KAKVW 195 (503)
Q Consensus 140 ~~~----~~~-----~~-~~~~~~~~---~~~~--~~~-~~~~~~v------~r~~l~~~L~~~~~~-~gv~~~-~~~v~ 195 (503)
.+. +.. .| ....+.|+ ++.. ... ...+.++ .-..+.+.|.+.+.+ .|++++ ++.++
T Consensus 83 ~~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~i~~~~~v~ 162 (577)
T PRK06069 83 QDAVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQRPFGGMSFPRTTFAADKTGFYIMHTLYSRALRFDNIHFYDEHFVT 162 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeeEecCCCcEeeeecCCcccceeeEcCCCchHHHHHHHHHHHHhcCCCEEEECCEEE
Confidence 000 000 00 01112221 1100 000 0001111 124577788887766 689999 89999
Q ss_pred EEEEeCCEEE-E---EeCCCc--EEEeceEEecCCCCcccc
Q 010693 196 HVNHQEFESS-I---VCDDGN--EIKASLIVDASGFASSFV 230 (503)
Q Consensus 196 ~i~~~~~~~~-v---~~~~g~--~i~a~~vI~A~G~~s~vr 230 (503)
++..+++.+. + ...+|+ .+.|+.||+|+|..+.+.
T Consensus 163 ~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~~ 203 (577)
T PRK06069 163 SLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGRLY 203 (577)
T ss_pred EEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhcccC
Confidence 9987666432 2 223554 589999999999876553
No 166
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.74 E-value=9.3e-08 Score=100.87 Aligned_cols=54 Identities=20% Similarity=0.201 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCC-EEEEEeCCCcEEEeceEEecCCC
Q 010693 172 NILKTKLLENCVSNGVKFH-KAKVWHVNHQEF-ESSIVCDDGNEIKASLIVDASGF 225 (503)
Q Consensus 172 ~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~-~~~v~~~~g~~i~a~~vI~A~G~ 225 (503)
..+.++|.+.+++.|++|+ +++|++|..+++ ++.+...+|..+++|.||.+...
T Consensus 224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence 4677788999999999999 999999999887 57777777777999999988766
No 167
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.74 E-value=2.6e-07 Score=95.59 Aligned_cols=81 Identities=15% Similarity=0.098 Sum_probs=59.3
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCC-EEEEEeCCCcEEEeceEEecCCCCcccc-cccCCCCCccce
Q 010693 166 YGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEF-ESSIVCDDGNEIKASLIVDASGFASSFV-EYDKPRNHGYQI 242 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~-~~~v~~~~g~~i~a~~vI~A~G~~s~vr-~~~~~~~~~~~~ 242 (503)
-+.+|...+.++|...|.+.|+.+. ++.|+++....+ ...|.+.-| .|++..||+|+|++++.. .+.+.....+..
T Consensus 181 DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWAr~Vg~m~gvkvPL~p~ 259 (856)
T KOG2844|consen 181 DGVMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWAREVGAMAGVKVPLVPM 259 (856)
T ss_pred CcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHHHHhhhhcCCcccceee
Confidence 3457889999999999999999999 999999976544 456777766 499999999999997533 333333333333
Q ss_pred eEEEE
Q 010693 243 AHGIL 247 (503)
Q Consensus 243 ~~g~~ 247 (503)
-+.+.
T Consensus 260 ~H~Yv 264 (856)
T KOG2844|consen 260 HHAYV 264 (856)
T ss_pred eeeEE
Confidence 33443
No 168
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.73 E-value=2e-07 Score=100.55 Aligned_cols=58 Identities=16% Similarity=0.217 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhCCcEEE-EeEEEEEEEe-CCEE-EEEe---CCCc--EEEeceEEecCCCCccc
Q 010693 172 NILKTKLLENCVSNGVKFH-KAKVWHVNHQ-EFES-SIVC---DDGN--EIKASLIVDASGFASSF 229 (503)
Q Consensus 172 ~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~-~~~~-~v~~---~~g~--~i~a~~vI~A~G~~s~v 229 (503)
..+...|.+.+.+.|++++ ++.++++..+ ++.+ .|.+ .+|+ .+.|+.||+|+|..+.+
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 213 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGRI 213 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcccc
Confidence 5688888888888999999 9999998875 3432 2322 3454 58899999999987654
No 169
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.73 E-value=1.2e-07 Score=102.31 Aligned_cols=57 Identities=18% Similarity=0.265 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhCCcEEE-EeEEEEEEEeC-CEEE-EE---eCCCc--EEEeceEEecCCCCcc
Q 010693 172 NILKTKLLENCVSNGVKFH-KAKVWHVNHQE-FESS-IV---CDDGN--EIKASLIVDASGFASS 228 (503)
Q Consensus 172 ~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~-~~~~-v~---~~~g~--~i~a~~vI~A~G~~s~ 228 (503)
..+...|.+.+.+.|++++ ++.++++..++ +.+. |. ..+|. .+.|+.||.|+|..+.
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 213 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGR 213 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcc
Confidence 5688889898988999999 99999998765 4332 22 23554 6899999999997664
No 170
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.72 E-value=1.3e-07 Score=102.58 Aligned_cols=59 Identities=12% Similarity=0.187 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHhCCcEEE-EeEEEEEEEe-CCEEE-EEe---CCCc--EEEeceEEecCCCCccc
Q 010693 171 RNILKTKLLENCVSNGVKFH-KAKVWHVNHQ-EFESS-IVC---DDGN--EIKASLIVDASGFASSF 229 (503)
Q Consensus 171 r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~-~~~~~-v~~---~~g~--~i~a~~vI~A~G~~s~v 229 (503)
-..+.+.|.+.+.+.|++++ ++.++++..+ ++.+. +.. .+|+ .+.|+.||+|+|..+..
T Consensus 186 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 252 (635)
T PLN00128 186 GHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGRA 252 (635)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCccc
Confidence 45688888888888999999 9999998765 44332 222 3454 68999999999976643
No 171
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.72 E-value=2.1e-07 Score=99.98 Aligned_cols=144 Identities=18% Similarity=0.114 Sum_probs=82.8
Q ss_pred cCcEEEECCCHHHHHHHHHHHccC--CCcEEEEcCCCCCCCCCcc--c-ch-------------hHhhhhc-Cc--hh--
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRH--SVKVCCVDPSPLSTWPNNY--G-VW-------------VDEFEDI-GL--VD-- 141 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~--G~~V~viE~~~~~~~~~~~--g-~~-------------~~~l~~~-~~--~~-- 141 (503)
++||+|||+|+|||+||+.+++ . |.+|+|+||.+.......+ | .+ .+.+..- ++ .+
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~-~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv 81 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAE-ANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVV 81 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHH-hCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHH
Confidence 5899999999999999999998 6 6899999998653221111 1 10 0011000 01 00
Q ss_pred --hhhh-----cc-CceEEEec---CCcc--ccc-CCCccc----c--CHHHHHHHHHHHHHh-CCcEEE-EeEEEEEEE
Q 010693 142 --CLDK-----TW-PMTCVFIN---DHKT--KYL-DRPYGR----V--SRNILKTKLLENCVS-NGVKFH-KAKVWHVNH 199 (503)
Q Consensus 142 --~~~~-----~~-~~~~~~~~---~~~~--~~~-~~~~~~----v--~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~ 199 (503)
++.. .| ....+.|+ ++.. ... ...+.+ . .-..+...|.+++.+ .|++++ ++.++++..
T Consensus 82 ~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~ 161 (580)
T TIGR01176 82 EYFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLLV 161 (580)
T ss_pred HHHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEEEEe
Confidence 0000 00 01111111 1100 000 000100 1 235688888888776 589998 899999988
Q ss_pred eCCEEE----EEeCCCc--EEEeceEEecCCCCccc
Q 010693 200 QEFESS----IVCDDGN--EIKASLIVDASGFASSF 229 (503)
Q Consensus 200 ~~~~~~----v~~~~g~--~i~a~~vI~A~G~~s~v 229 (503)
+++.+. +...+|. .+.|+.||.|||..+.+
T Consensus 162 ~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 162 DDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGRV 197 (580)
T ss_pred eCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCccc
Confidence 766443 1234563 68999999999988765
No 172
>PLN02576 protoporphyrinogen oxidase
Probab=98.72 E-value=2.5e-06 Score=90.67 Aligned_cols=38 Identities=26% Similarity=0.359 Sum_probs=34.8
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccC-CCcEEEEcCCCCCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRH-SVKVCCVDPSPLST 122 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~-G~~V~viE~~~~~~ 122 (503)
.++||+|||||++||++|+.|++ + |++|+|+|+.+..+
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~-~~g~~v~vlEa~~rvG 49 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALAS-KHGVNVLVTEARDRVG 49 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHH-hcCCCEEEEecCCCCC
Confidence 45799999999999999999999 9 99999999987664
No 173
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.72 E-value=5.6e-06 Score=83.26 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=39.1
Q ss_pred HHHHHHHh-CCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCC
Q 010693 177 KLLENCVS-NGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASG 224 (503)
Q Consensus 177 ~L~~~~~~-~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G 224 (503)
.|.+.+.+ .|-.+. +.+|.+|++++++|+|++.+..+..+|++|.+.-
T Consensus 210 ~la~Afa~ql~~~I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~tiP 259 (450)
T COG1231 210 QLAEAFAKQLGTRILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVTIP 259 (450)
T ss_pred HHHHHHHHHhhceEEecCceeeEEEcCCeEEEEeCCcceEEecEEEEecC
Confidence 44454443 566777 8899999999999999999866899999999973
No 174
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.72 E-value=4.5e-08 Score=102.92 Aligned_cols=45 Identities=38% Similarity=0.581 Sum_probs=36.1
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccc
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGV 129 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~ 129 (503)
.+|||+||||||||+++|..|++ .|.+|+|||++...+...++|+
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~-~g~~v~lie~~~~GG~~~~~gc 46 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAK-LGKKVALIEKGPLGGTCLNVGC 46 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCccccceeccce
Confidence 56999999999999999999999 9999999998433333333343
No 175
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.71 E-value=1.3e-07 Score=101.89 Aligned_cols=59 Identities=17% Similarity=0.120 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHhCCcEEE-EeEEEEEEEe-CCEEE-EE---eCCCc--EEEeceEEecCCCCccc
Q 010693 171 RNILKTKLLENCVSNGVKFH-KAKVWHVNHQ-EFESS-IV---CDDGN--EIKASLIVDASGFASSF 229 (503)
Q Consensus 171 r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~-~~~~~-v~---~~~g~--~i~a~~vI~A~G~~s~v 229 (503)
-..+...|.+++.+.|++++ ++.++++..+ ++.+. |. ..+|+ .+.|+.||.|+|..+.+
T Consensus 142 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 208 (588)
T PRK08958 142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGRI 208 (588)
T ss_pred HHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcccc
Confidence 35688888888888999999 9999999875 44332 22 23554 58999999999977644
No 176
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.71 E-value=1.7e-07 Score=101.78 Aligned_cols=37 Identities=38% Similarity=0.588 Sum_probs=34.0
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLS 121 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~ 121 (503)
.++||+|||+|.||++||+.+++ .|.+|+|||+.+..
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae-~G~~V~lieK~~~~ 43 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARE-RGLRVAVVCKSLFG 43 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHH-CCCCEEEEeccCCC
Confidence 46899999999999999999999 99999999997543
No 177
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.70 E-value=1.5e-06 Score=89.17 Aligned_cols=60 Identities=20% Similarity=0.228 Sum_probs=54.1
Q ss_pred ccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCcc
Q 010693 168 RVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASS 228 (503)
Q Consensus 168 ~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~ 228 (503)
+++...+...|.+.+.+ |++++ +++|++++.+++.+.|++.+|..+.||.||.|+|.++.
T Consensus 131 ~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 131 WLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAG 191 (381)
T ss_pred ccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcccc
Confidence 47889999999999988 99999 89999999888888898888888999999999998874
No 178
>PLN02487 zeta-carotene desaturase
Probab=98.70 E-value=2.3e-05 Score=83.74 Aligned_cols=38 Identities=26% Similarity=0.385 Sum_probs=34.7
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLST 122 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~ 122 (503)
...+|+|||||++||++|+.|++ +|++|+|+|+.+..+
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~-~g~~v~i~E~~~~~g 111 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLD-QGHEVDIYESRPFIG 111 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHh-CCCeeEEEecCCCCC
Confidence 45799999999999999999999 999999999987654
No 179
>PRK07208 hypothetical protein; Provisional
Probab=98.70 E-value=9.7e-06 Score=85.76 Aligned_cols=39 Identities=31% Similarity=0.527 Sum_probs=35.2
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCC
Q 010693 83 RIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLST 122 (503)
Q Consensus 83 ~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~ 122 (503)
+...||+|||||++||++|+.|++ +|++|+|+|+.+..+
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~-~g~~v~v~E~~~~~G 40 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLK-RGYPVTVLEADPVVG 40 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHH-CCCcEEEEecCCCCC
Confidence 456799999999999999999999 999999999987653
No 180
>PRK08275 putative oxidoreductase; Provisional
Probab=98.69 E-value=2e-07 Score=99.98 Aligned_cols=146 Identities=15% Similarity=0.168 Sum_probs=83.8
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHccC--CCcEEEEcCCCCCCCCCc-cc--chhH-----------hhh----h-cCc--
Q 010693 83 RIRYDVIIIGTGPAGLRLAEQVSSRH--SVKVCCVDPSPLSTWPNN-YG--VWVD-----------EFE----D-IGL-- 139 (503)
Q Consensus 83 ~~~~DvvIVGgGpaGl~~A~~La~~~--G~~V~viE~~~~~~~~~~-~g--~~~~-----------~l~----~-~~~-- 139 (503)
...+||+|||||.||++||+.+++ . |.+|+|+|+.+....... .+ .+.. .++ . -++
T Consensus 7 ~~~~DVlVIG~G~AGl~AAi~aa~-~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d 85 (554)
T PRK08275 7 EVETDILVIGGGTAGPMAAIKAKE-RNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVD 85 (554)
T ss_pred eEecCEEEECcCHHHHHHHHHHHH-hCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCcc
Confidence 456999999999999999999998 6 789999999865211111 11 0000 000 0 011
Q ss_pred hhhhhh---------cc-CceEEEecCCccccc-----C--CCcc--ccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEE
Q 010693 140 VDCLDK---------TW-PMTCVFINDHKTKYL-----D--RPYG--RVSRNILKTKLLENCVSNGVKFH-KAKVWHVNH 199 (503)
Q Consensus 140 ~~~~~~---------~~-~~~~~~~~~~~~~~~-----~--~~~~--~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~ 199 (503)
.+.+.. .| ....+.+........ . ..+. .-.-..+.+.|.+.+.+.|++++ ++.|+++..
T Consensus 86 ~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~ 165 (554)
T PRK08275 86 QKAVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLITNRIMATRLLT 165 (554)
T ss_pred HHHHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCEEEcceEEEEEEE
Confidence 010100 00 011111111000000 0 0000 01234678889898988999999 999999987
Q ss_pred e-CCEEE-EE---eCCCc--EEEeceEEecCCCCccc
Q 010693 200 Q-EFESS-IV---CDDGN--EIKASLIVDASGFASSF 229 (503)
Q Consensus 200 ~-~~~~~-v~---~~~g~--~i~a~~vI~A~G~~s~v 229 (503)
+ ++.+. |. ..+|+ .+.|+.||+|+|..+.+
T Consensus 166 ~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~ 202 (554)
T PRK08275 166 DADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGRL 202 (554)
T ss_pred cCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcccc
Confidence 6 44332 22 23554 58999999999987654
No 181
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.69 E-value=3.4e-07 Score=98.80 Aligned_cols=59 Identities=25% Similarity=0.371 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeC----CEE-EEE---eCCCc--EEEeceEEecCCCCccc
Q 010693 171 RNILKTKLLENCVSNGVKFH-KAKVWHVNHQE----FES-SIV---CDDGN--EIKASLIVDASGFASSF 229 (503)
Q Consensus 171 r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~----~~~-~v~---~~~g~--~i~a~~vI~A~G~~s~v 229 (503)
-..+.+.|.+.+.+.||+++ ++.|+++..++ +.+ .+. ..+|+ .+.|+.||+|+|..+.+
T Consensus 139 G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 208 (583)
T PRK08205 139 GHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGRV 208 (583)
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCccc
Confidence 35678889998988999999 99999998654 432 222 23454 58999999999987754
No 182
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.69 E-value=1.2e-07 Score=99.65 Aligned_cols=135 Identities=17% Similarity=0.205 Sum_probs=75.8
Q ss_pred cEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhH--hhhhcCchhhhhhccCceEEEecCCcccccCC
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVD--EFEDIGLVDCLDKTWPMTCVFINDHKTKYLDR 164 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (503)
+|+||||||||+++|..+++ .|.+|+|||+++..+..-+.|+-.. .++.....+.+... ....+..... ....
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~-~g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~-~~~g~~~~~~---~~~~ 76 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQ-NGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKA-NHFGITLPNG---SISI 76 (458)
T ss_pred eEEEECCCHHHHHHHHHHHh-CCCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHH-HhcCccccCC---CCcc
Confidence 79999999999999999999 9999999998765444444444221 11111111111110 0001110000 0001
Q ss_pred Ccccc-C-HHH----HHHHHHHHHHhCCcEEEEeEEEEEEEeCCEEEEEeCCCc-EEEeceEEecCCCCcc
Q 010693 165 PYGRV-S-RNI----LKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDDGN-EIKASLIVDASGFASS 228 (503)
Q Consensus 165 ~~~~v-~-r~~----l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g~-~i~a~~vI~A~G~~s~ 228 (503)
.+..+ . +.. +.+.....+...|++++..++..++ +..+.|..++|+ ++++|.||.|+|....
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~--~~~v~v~~~~~~~~~~~d~lviATGs~p~ 145 (458)
T PRK06912 77 DWKQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFET--DHRVRVEYGDKEEVVDAEQFIIAAGSEPT 145 (458)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcc--CCEEEEeeCCCcEEEECCEEEEeCCCCCC
Confidence 11111 1 111 2223333445578999865655443 456677666664 6999999999998764
No 183
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.68 E-value=7.7e-06 Score=86.10 Aligned_cols=35 Identities=26% Similarity=0.343 Sum_probs=32.2
Q ss_pred cEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCC
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLST 122 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~ 122 (503)
+|+|||||++||++|+.|++ .|++|+|+|+.+..+
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~-~G~~v~v~E~~~~~G 35 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVD-AGHEVDIYESRSFIG 35 (474)
T ss_pred CEEEECCCHHHHHHHHHHHH-CCCcEEEEEecCCCC
Confidence 58999999999999999999 999999999987653
No 184
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.68 E-value=1.2e-07 Score=99.88 Aligned_cols=137 Identities=18% Similarity=0.170 Sum_probs=73.3
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCC---------CCCCCcccchhH-hh-hhcCchhhhhhccCceEEE
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPL---------STWPNNYGVWVD-EF-EDIGLVDCLDKTWPMTCVF 153 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~---------~~~~~~~g~~~~-~l-~~~~~~~~~~~~~~~~~~~ 153 (503)
.|||+||||||+|+.+|+.+++ .|.+|+|||+... .+..-+.|+... .| .......... ......+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~-~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~-~~~~~g~~ 79 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAAD-YGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALK-DSRNYGWN 79 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHH-CCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHh-hhhhcCcc
Confidence 5899999999999999999999 9999999997421 111112233211 11 1111100000 01111111
Q ss_pred ecCCcccccCCCccc-cC-H----HHHHHHHHHHHHhCCcEEEEeEEEEEEEeCCEEEEEeCCCc--EEEeceEEecCCC
Q 010693 154 INDHKTKYLDRPYGR-VS-R----NILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDDGN--EIKASLIVDASGF 225 (503)
Q Consensus 154 ~~~~~~~~~~~~~~~-v~-r----~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g~--~i~a~~vI~A~G~ 225 (503)
+... ..-.+.. +. + ..+.+...+.+...|++++..+..-+. ...+.|...+|+ ++++|.||.|+|.
T Consensus 80 ~~~~----~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~--~~~v~v~~~~g~~~~~~~d~lVIATGs 153 (484)
T TIGR01438 80 VEET----VKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVD--KHRIKATNKKGKEKIYSAERFLIATGE 153 (484)
T ss_pred cCCC----cccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcC--CCEEEEeccCCCceEEEeCEEEEecCC
Confidence 1110 0011111 11 1 123334444566689999844443332 345666554543 6999999999998
Q ss_pred Cccc
Q 010693 226 ASSF 229 (503)
Q Consensus 226 ~s~v 229 (503)
.+..
T Consensus 154 ~p~~ 157 (484)
T TIGR01438 154 RPRY 157 (484)
T ss_pred CCCC
Confidence 7644
No 185
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.68 E-value=5.8e-07 Score=96.96 Aligned_cols=57 Identities=25% Similarity=0.253 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEE---EEEeCCCc-EEEe-ceEEecCCCCcc
Q 010693 172 NILKTKLLENCVSNGVKFH-KAKVWHVNHQEFES---SIVCDDGN-EIKA-SLIVDASGFASS 228 (503)
Q Consensus 172 ~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~---~v~~~~g~-~i~a-~~vI~A~G~~s~ 228 (503)
..+.+.|.+.+++.|++++ +++|+++..+++.+ .+...++. +++| +.||.|+|..+.
T Consensus 217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 217 NALVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence 3466788889999999999 99999998776643 23333443 5889 999999997763
No 186
>PLN02268 probable polyamine oxidase
Probab=98.68 E-value=1.1e-05 Score=84.29 Aligned_cols=42 Identities=14% Similarity=0.234 Sum_probs=36.3
Q ss_pred CCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCC
Q 010693 185 NGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFA 226 (503)
Q Consensus 185 ~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~ 226 (503)
.+++++ ++.|+.|...++++.|++.+|+++.||.||.|.-..
T Consensus 209 ~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P~~ 251 (435)
T PLN02268 209 KGLDIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVPLG 251 (435)
T ss_pred ccCceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecCHH
Confidence 456788 999999999888899999999889999999998543
No 187
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.67 E-value=2.3e-07 Score=98.42 Aligned_cols=142 Identities=19% Similarity=0.189 Sum_probs=80.2
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcc--c-ch---------h----Hhhhhc-Cc--hh----
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNY--G-VW---------V----DEFEDI-GL--VD---- 141 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~--g-~~---------~----~~l~~~-~~--~~---- 141 (503)
.+||+|||+|.|||+||+.+++ |.+|+|+|+.+.......+ | .+ . +.+... ++ .+
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~--g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~ 80 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH--EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVRY 80 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc--CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHHH
Confidence 6899999999999999999965 8999999998653322111 1 10 0 001110 10 00
Q ss_pred hhhh------ccCceEEEecCC--ccccc----CCCc-------cccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeC
Q 010693 142 CLDK------TWPMTCVFINDH--KTKYL----DRPY-------GRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQE 201 (503)
Q Consensus 142 ~~~~------~~~~~~~~~~~~--~~~~~----~~~~-------~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~ 201 (503)
.+.. .+....+.|+.. ..... ...+ +...-..+.+.|.+.+. .|++++ ++.|+++..++
T Consensus 81 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~ 159 (510)
T PRK08071 81 LVEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELV-PHVTVVEQEMVIDLIIEN 159 (510)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHh-cCCEEEECeEhhheeecC
Confidence 0110 001112222210 00000 0000 01123557777877775 689999 89999998766
Q ss_pred CEEE-EEe--CCCc--EEEeceEEecCCCCccc
Q 010693 202 FESS-IVC--DDGN--EIKASLIVDASGFASSF 229 (503)
Q Consensus 202 ~~~~-v~~--~~g~--~i~a~~vI~A~G~~s~v 229 (503)
+.+. +.+ .+|+ .+.|+.||.|+|..+.+
T Consensus 160 g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~~ 192 (510)
T PRK08071 160 GRCIGVLTKDSEGKLKRYYADYVVLASGGCGGL 192 (510)
T ss_pred CEEEEEEEEECCCcEEEEEcCeEEEecCCCccc
Confidence 6433 333 2343 68999999999987653
No 188
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.67 E-value=7.2e-07 Score=95.53 Aligned_cols=47 Identities=21% Similarity=0.331 Sum_probs=38.9
Q ss_pred CCCCCCCCCCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCC
Q 010693 75 LPWFHPSDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTW 123 (503)
Q Consensus 75 ~~~~~~~~~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~ 123 (503)
+|.-.+....++||||||+| +|+++|+.+++ .|.+|+|||+.+..+.
T Consensus 6 ~~~~~~~~d~e~DvvvvG~G-~G~~aA~~a~~-~G~~v~v~Ek~~~~GG 52 (564)
T PRK12845 6 IPAGTPVRDTTVDLLVVGSG-TGMAAALAAHE-LGLSVLIVEKSSYVGG 52 (564)
T ss_pred CCCCCCCCCceeCEEEECCc-HHHHHHHHHHH-CCCcEEEEecCCCCcC
Confidence 34444455668999999999 89999999999 9999999999866543
No 189
>PLN02815 L-aspartate oxidase
Probab=98.67 E-value=2.7e-07 Score=99.14 Aligned_cols=149 Identities=19% Similarity=0.203 Sum_probs=84.5
Q ss_pred CCCCCCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcc---cchh-------------Hhhhhc-Cc--
Q 010693 79 HPSDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNY---GVWV-------------DEFEDI-GL-- 139 (503)
Q Consensus 79 ~~~~~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~---g~~~-------------~~l~~~-~~-- 139 (503)
+.++..++||+|||+|.|||++|+.+++ .| +|+|+|+.+.......+ |.+. +.+... ++
T Consensus 23 ~~~~~~~~DVlVVG~G~AGl~AAl~Aae-~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d 100 (594)
T PLN02815 23 DDESTKYFDFLVIGSGIAGLRYALEVAE-YG-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCD 100 (594)
T ss_pred ccCcccccCEEEECccHHHHHHHHHHhh-CC-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCc
Confidence 3345667999999999999999999999 99 99999988653321111 1100 011100 11
Q ss_pred hhhhh----h-----cc-CceEEEecCCcc-c-cc--C--CCccc------cCHHHHHHHHHHHHHh-CCcEEE-EeEEE
Q 010693 140 VDCLD----K-----TW-PMTCVFINDHKT-K-YL--D--RPYGR------VSRNILKTKLLENCVS-NGVKFH-KAKVW 195 (503)
Q Consensus 140 ~~~~~----~-----~~-~~~~~~~~~~~~-~-~~--~--~~~~~------v~r~~l~~~L~~~~~~-~gv~~~-~~~v~ 195 (503)
.+.+. . .| ....+.|+.... . .. . ..+.+ ..-..+...|.+.+.+ .|++++ ++.++
T Consensus 101 ~~lv~~~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~ 180 (594)
T PLN02815 101 EETVRVVCTEGPERVKELIAMGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAI 180 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhh
Confidence 01010 0 01 011222221100 0 00 0 00001 1235677888888876 489999 89999
Q ss_pred EEEEeC-C----EEEEEe---CCCc--EEEeceEEecCCCCccc
Q 010693 196 HVNHQE-F----ESSIVC---DDGN--EIKASLIVDASGFASSF 229 (503)
Q Consensus 196 ~i~~~~-~----~~~v~~---~~g~--~i~a~~vI~A~G~~s~v 229 (503)
++..++ + .+.+.+ .+|. .+.|+.||.|+|....+
T Consensus 181 ~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 224 (594)
T PLN02815 181 DLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGHI 224 (594)
T ss_pred eeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcceee
Confidence 988753 3 123332 3454 57999999999976643
No 190
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.66 E-value=6.5e-07 Score=96.55 Aligned_cols=39 Identities=26% Similarity=0.531 Sum_probs=35.4
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCC
Q 010693 82 DRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLS 121 (503)
Q Consensus 82 ~~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~ 121 (503)
+..++||||||+|+||+++|+.+++ +|.+|+|+|+.+..
T Consensus 6 ~~~~~DVvVVG~G~aGl~AA~~aa~-~G~~v~llEk~~~~ 44 (574)
T PRK12842 6 NELTCDVLVIGSGAGGLSAAITARK-LGLDVVVLEKEPVF 44 (574)
T ss_pred cCCCCCEEEECcCHHHHHHHHHHHH-cCCeEEEEecCCCC
Confidence 4457999999999999999999999 99999999998654
No 191
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.65 E-value=2e-06 Score=88.35 Aligned_cols=55 Identities=16% Similarity=0.091 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEE-eCCCc--EEEeceEEecCCCC
Q 010693 172 NILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIV-CDDGN--EIKASLIVDASGFA 226 (503)
Q Consensus 172 ~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~-~~~g~--~i~a~~vI~A~G~~ 226 (503)
..+.+.|.+.+++.|++++ +++|++++.+++.+.+. ..+|+ .++||.||.|+|..
T Consensus 259 ~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 259 LRLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence 4577788888888999999 99999999877766543 34443 59999999999964
No 192
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.65 E-value=4.5e-07 Score=98.79 Aligned_cols=58 Identities=16% Similarity=0.203 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCE---EEEEe-CCCc--EEEeceEEecCCCCccc
Q 010693 172 NILKTKLLENCVSNGVKFH-KAKVWHVNHQEFE---SSIVC-DDGN--EIKASLIVDASGFASSF 229 (503)
Q Consensus 172 ~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~---~~v~~-~~g~--~i~a~~vI~A~G~~s~v 229 (503)
..+...|.+.+.+.|++++ ++.++++..+++. +.+.. .+|+ .+.|+.||.|+|..+.+
T Consensus 158 ~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~~ 222 (657)
T PRK08626 158 HTMLYAVDNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYGRI 222 (657)
T ss_pred HHHHHHHHHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccCC
Confidence 3456678888888999999 9999999987664 33332 3564 47899999999976654
No 193
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.65 E-value=2.4e-07 Score=99.20 Aligned_cols=145 Identities=17% Similarity=0.162 Sum_probs=82.6
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCC-CCCCcc--c-ch---------h----Hhhhhc-Cc--hhh
Q 010693 83 RIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLS-TWPNNY--G-VW---------V----DEFEDI-GL--VDC 142 (503)
Q Consensus 83 ~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~-~~~~~~--g-~~---------~----~~l~~~-~~--~~~ 142 (503)
...+||+|||+|.||++||+.+ + .|.+|+|+|+.+.. +....+ | .+ . +.+... ++ .+.
T Consensus 5 ~~~~DVlVVG~G~AGl~AAi~A-~-~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~l 82 (543)
T PRK06263 5 IMITDVLIIGSGGAGARAAIEA-E-RGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKL 82 (543)
T ss_pred eeccCEEEECccHHHHHHHHHH-h-cCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHH
Confidence 4568999999999999999999 8 89999999997542 111111 1 10 0 000000 01 011
Q ss_pred h----hh-----cc-CceEEEecCCcc---c--ccC-CCcc---c---cCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEE
Q 010693 143 L----DK-----TW-PMTCVFINDHKT---K--YLD-RPYG---R---VSRNILKTKLLENCVSNGVKFH-KAKVWHVNH 199 (503)
Q Consensus 143 ~----~~-----~~-~~~~~~~~~~~~---~--~~~-~~~~---~---v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~ 199 (503)
+ .. .| ....+.|..... . ... ..+. + ..-..+...|.+.+.+.|++++ ++.++++..
T Consensus 83 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~t~v~~Li~ 162 (543)
T PRK06263 83 VEILVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIKILEEVMAIKLIV 162 (543)
T ss_pred HHHHHHHHHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCEEEeCeEeeeeEE
Confidence 1 00 01 011111211000 0 000 0000 0 1235677788888888999999 999999987
Q ss_pred eCCE-EE-EE--e-CCCc--EEEeceEEecCCCCccc
Q 010693 200 QEFE-SS-IV--C-DDGN--EIKASLIVDASGFASSF 229 (503)
Q Consensus 200 ~~~~-~~-v~--~-~~g~--~i~a~~vI~A~G~~s~v 229 (503)
++++ +. +. . .+|. .+.|+.||+|+|..+.+
T Consensus 163 ~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~~ 199 (543)
T PRK06263 163 DENREVIGAIFLDLRNGEIFPIYAKATILATGGAGQL 199 (543)
T ss_pred eCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCCC
Confidence 6553 32 22 2 4554 58999999999976643
No 194
>PRK14727 putative mercuric reductase; Provisional
Probab=98.65 E-value=1.7e-07 Score=98.99 Aligned_cols=138 Identities=15% Similarity=0.129 Sum_probs=73.5
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCC-CCCcccchhHh--hhhcCchhhhhhccCceEEEecCCccc
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLST-WPNNYGVWVDE--FEDIGLVDCLDKTWPMTCVFINDHKTK 160 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~-~~~~~g~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (503)
.+|||+||||||+|+.+|..|++ .|.+|+|+|+++..+ ...+.|++... +....+..... ..+...+.. .
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~-~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~-~~~~~g~~~--~--- 87 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAE-HGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQR-SNPFDGVEA--V--- 87 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHh-CCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHh-hccccCccc--C---
Confidence 46999999999999999999999 999999999864322 22233432211 11100101110 001000100 0
Q ss_pred ccCCCcccc-C-HHHHHHH-----HHHHHHh-CCcEEEEeEEEEEEEeCCEEEEEeCCCc--EEEeceEEecCCCCcccc
Q 010693 161 YLDRPYGRV-S-RNILKTK-----LLENCVS-NGVKFHKAKVWHVNHQEFESSIVCDDGN--EIKASLIVDASGFASSFV 230 (503)
Q Consensus 161 ~~~~~~~~v-~-r~~l~~~-----L~~~~~~-~gv~~~~~~v~~i~~~~~~~~v~~~~g~--~i~a~~vI~A~G~~s~vr 230 (503)
.....+..+ . ....... ..+.... .|++++..+..-. +++.+.|.+.+|+ ++.+|.||.|+|......
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~--~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p 165 (479)
T PRK14727 88 APSIDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFK--DGNTLVVRLHDGGERVLAADRCLIATGSTPTIP 165 (479)
T ss_pred CCccCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEe--cCCEEEEEeCCCceEEEEeCEEEEecCCCCCCC
Confidence 000011111 1 1111111 1222333 3888884333222 2456778777764 699999999999876543
No 195
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.64 E-value=4.8e-07 Score=93.59 Aligned_cols=54 Identities=17% Similarity=0.218 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhCCcEEE-EeEEEEEEEeCC--EEEEEeCCCcEEEeceEEecCCCC
Q 010693 173 ILKTKLLENCVSNGVKFH-KAKVWHVNHQEF--ESSIVCDDGNEIKASLIVDASGFA 226 (503)
Q Consensus 173 ~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~--~~~v~~~~g~~i~a~~vI~A~G~~ 226 (503)
.+-+.|.+.+...|++++ +++|.+|..+++ .+.|++.+|++++|+.||......
T Consensus 233 ~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~ 289 (443)
T PTZ00363 233 GLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYF 289 (443)
T ss_pred HHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccc
Confidence 455566777777899999 999999987753 367888899999999999866544
No 196
>PRK12839 hypothetical protein; Provisional
Probab=98.63 E-value=1.2e-06 Score=94.22 Aligned_cols=42 Identities=31% Similarity=0.504 Sum_probs=37.7
Q ss_pred CCCCCCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCC
Q 010693 79 HPSDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLS 121 (503)
Q Consensus 79 ~~~~~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~ 121 (503)
++|+..++||+|||+|++|+++|+.+++ .|.+|+|||+.+..
T Consensus 2 ~~~~~~~~dv~ViG~G~aG~~aa~~~~~-~g~~v~~iek~~~~ 43 (572)
T PRK12839 2 TPSMTHTYDVVVVGSGAGGLSAAVAAAY-GGAKVLVVEKASTC 43 (572)
T ss_pred CCCcCCcCCEEEECcCHHHHHHHHHHHH-CCCcEEEEecCCCC
Confidence 3567778999999999999999999999 99999999987654
No 197
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.61 E-value=5.6e-07 Score=97.10 Aligned_cols=37 Identities=27% Similarity=0.378 Sum_probs=33.6
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLS 121 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~ 121 (503)
..+||+|||+|+|||+||+.+++ .|.+|+|||+.+..
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~-~G~~V~lieK~~~~ 38 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAE-AGVHVDLFSLVPVK 38 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHH-cCCcEEEEEccCCC
Confidence 45799999999999999999999 99999999987653
No 198
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.61 E-value=2.9e-07 Score=96.88 Aligned_cols=34 Identities=24% Similarity=0.516 Sum_probs=31.7
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccC-CCcEEEEcCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRH-SVKVCCVDPS 118 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~-G~~V~viE~~ 118 (503)
.+|||+||||||+|..+|..+++ . |.+|+|||++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~-~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAAT-LYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHH-hcCCEEEEEecc
Confidence 46999999999999999999999 8 8999999974
No 199
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.60 E-value=1.8e-07 Score=99.07 Aligned_cols=33 Identities=33% Similarity=0.627 Sum_probs=31.5
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCC
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPS 118 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~ 118 (503)
.|||+||||||||+.+|..|++ +|.+|+|||+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~-~G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAA-HGKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHh-CCCeEEEEecc
Confidence 5999999999999999999999 99999999963
No 200
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.60 E-value=5.3e-07 Score=95.90 Aligned_cols=58 Identities=14% Similarity=0.269 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCE-EEEEeCCCcEEEeceEEecCCCCccc
Q 010693 172 NILKTKLLENCVSNGVKFH-KAKVWHVNHQEFE-SSIVCDDGNEIKASLIVDASGFASSF 229 (503)
Q Consensus 172 ~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~-~~v~~~~g~~i~a~~vI~A~G~~s~v 229 (503)
..+.+.|.+.+++.|++++ +++|++|..+++. +.|++.+|+++.||.||.|.+....+
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~ 278 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTY 278 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHH
Confidence 4677788888888999999 9999999987765 57888888889999999999865443
No 201
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.59 E-value=1.1e-06 Score=93.94 Aligned_cols=148 Identities=25% Similarity=0.361 Sum_probs=83.1
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcc--c-ch---------h----Hhhhhc-Cc--hhh
Q 010693 82 DRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNY--G-VW---------V----DEFEDI-GL--VDC 142 (503)
Q Consensus 82 ~~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~--g-~~---------~----~~l~~~-~~--~~~ 142 (503)
+...+||+|||+|.||+++|+.+++ . .+|+|+|+.+.......+ | .+ . +.+... ++ .+.
T Consensus 5 ~~~~~DVlVVG~G~AGl~AA~~aa~-~-~~VilveK~~~~~g~t~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~ 82 (536)
T PRK09077 5 PEHQCDVLIIGSGAAGLSLALRLAE-H-RRVAVLSKGPLSEGSTFYAQGGIAAVLDETDSIESHVEDTLIAGAGLCDEDA 82 (536)
T ss_pred ccccCCEEEECchHHHHHHHHHHHH-C-CCEEEEeccCCCCCChhhccCCeeeccCCCccHHHHHHHHHHHccCCCCHHH
Confidence 4567999999999999999999998 6 899999998653221111 1 10 0 001000 11 000
Q ss_pred hh----h-----cc-CceEEEecCCcc-----cc-c----CCCccc------cCHHHHHHHHHHHHHh-CCcEEE-EeEE
Q 010693 143 LD----K-----TW-PMTCVFINDHKT-----KY-L----DRPYGR------VSRNILKTKLLENCVS-NGVKFH-KAKV 194 (503)
Q Consensus 143 ~~----~-----~~-~~~~~~~~~~~~-----~~-~----~~~~~~------v~r~~l~~~L~~~~~~-~gv~~~-~~~v 194 (503)
+. . .| ....+.|+.... .. . .....+ -.-..+...|.+++.+ .|++++ ++.+
T Consensus 83 v~~~~~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~I~v~~~~~v 162 (536)
T PRK09077 83 VRFIAENAREAVQWLIDQGVPFTTDEQANGEEGYHLTREGGHSHRRILHAADATGKAVQTTLVERARNHPNITVLERHNA 162 (536)
T ss_pred HHHHHHHHHHHHHHHHHcCCccccCCCCCccccccccCCCCccCCceEecCCCCHHHHHHHHHHHHHhCCCcEEEeeEEe
Confidence 10 0 00 011111211000 00 0 000001 1235677888888766 589999 9999
Q ss_pred EEEEEeC------CEE-EEEe---CCCc--EEEeceEEecCCCCccccc
Q 010693 195 WHVNHQE------FES-SIVC---DDGN--EIKASLIVDASGFASSFVE 231 (503)
Q Consensus 195 ~~i~~~~------~~~-~v~~---~~g~--~i~a~~vI~A~G~~s~vr~ 231 (503)
+++..++ +.+ .|.. .+|+ .+.|+.||+|+|..+.+..
T Consensus 163 ~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~~~ 211 (536)
T PRK09077 163 IDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASKVYL 211 (536)
T ss_pred eeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCCCCC
Confidence 9987643 433 2332 2454 5899999999998876543
No 202
>PRK07846 mycothione reductase; Reviewed
Probab=98.58 E-value=2.2e-07 Score=97.16 Aligned_cols=133 Identities=19% Similarity=0.171 Sum_probs=71.5
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHh--hhhcCchhhhhhccCceEEEecCCccccc
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDE--FEDIGLVDCLDKTWPMTCVFINDHKTKYL 162 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (503)
+||++||||||+|..+|.. . .|.+|+|+|++.-.+..-++|+-... +....+...+... ....+.. . . .
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~-~G~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~-~~~g~~~--~-~--~ 71 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--F-ADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREA-ARLGVDA--E-L--D 71 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--H-CCCeEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHH-HhCCccC--C-C--C
Confidence 4899999999999988754 5 79999999987655555556653221 1111111111110 0000100 0 0 0
Q ss_pred CCCccc-cCH-HHHHHHH-----HHH-HHhCCcEEEEeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCcccc
Q 010693 163 DRPYGR-VSR-NILKTKL-----LEN-CVSNGVKFHKAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSFV 230 (503)
Q Consensus 163 ~~~~~~-v~r-~~l~~~L-----~~~-~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~vr 230 (503)
.-.+.. +++ ....+.+ ... +...|++++..+...+ ++. +|.+.+|+++++|.||.|+|......
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~--~~~--~V~v~~g~~~~~d~lViATGs~p~~p 143 (451)
T PRK07846 72 GVRWPDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFI--GPK--TLRTGDGEEITADQVVIAAGSRPVIP 143 (451)
T ss_pred cCCHHHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEe--cCC--EEEECCCCEEEeCEEEEcCCCCCCCC
Confidence 001111 111 1111111 122 4567899984444433 233 34556777899999999999876543
No 203
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.56 E-value=7.7e-07 Score=92.47 Aligned_cols=114 Identities=13% Similarity=0.164 Sum_probs=77.3
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccc
Q 010693 82 DRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKY 161 (503)
Q Consensus 82 ~~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (503)
.+.+.+|||||||.||+.+|..|.+ .+++|+|||+++...+ ...+... +
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~~-~~~~ItlI~~~~~~~~-------~~~l~~~-----~------------------ 55 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLDP-KKYNITVISPRNHMLF-------TPLLPQT-----T------------------ 55 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhCc-CCCeEEEEcCCCCcch-------hhhHHHh-----c------------------
Confidence 3456799999999999999999988 8899999997653211 1110000 0
Q ss_pred cCCCccccCHHHHHHHHHHHHHhCCcEEEEeEEEEEEEeCCEEEEEe--------CCCcEEEeceEEecCCCCcccc
Q 010693 162 LDRPYGRVSRNILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVC--------DDGNEIKASLIVDASGFASSFV 230 (503)
Q Consensus 162 ~~~~~~~v~r~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~--------~~g~~i~a~~vI~A~G~~s~vr 230 (503)
.+..+.+.+..-+.+.+...|+++...+|++|+.++..+.+.. ++|.++.+|++|.|+|......
T Consensus 56 ----~g~~~~~~~~~~~~~~~~~~~~~~i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~ 128 (424)
T PTZ00318 56 ----TGTLEFRSICEPVRPALAKLPNRYLRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTF 128 (424)
T ss_pred ----ccCCChHHhHHHHHHHhccCCeEEEEEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCC
Confidence 0011112222234445555788888889999998887776632 3566899999999999876543
No 204
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.55 E-value=9.7e-07 Score=68.83 Aligned_cols=79 Identities=24% Similarity=0.282 Sum_probs=62.6
Q ss_pred cEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCCc
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRPY 166 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (503)
.|+|||||+.|+-+|..|++ .|.+|++||+.+... ..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~-~g~~vtli~~~~~~~-----------------------------------------~~- 37 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAE-LGKEVTLIERSDRLL-----------------------------------------PG- 37 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHH-TTSEEEEEESSSSSS-----------------------------------------TT-
T ss_pred CEEEECcCHHHHHHHHHHHH-hCcEEEEEeccchhh-----------------------------------------hh-
Confidence 38999999999999999999 999999999765311 00
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCC
Q 010693 167 GRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDG 211 (503)
Q Consensus 167 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g 211 (503)
-...+.+.+.+.+++.|++++ ++.+.+++.+++++.|+++||
T Consensus 38 ---~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 38 ---FDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp ---SSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred ---cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 012345566677778899999 999999999987777888876
No 205
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.55 E-value=4.7e-06 Score=78.32 Aligned_cols=143 Identities=17% Similarity=0.248 Sum_probs=84.7
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCC------CcEEEEcCCCCCCCCCc--ccc---hhH-----hhhhcCc------hhh
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHS------VKVCCVDPSPLSTWPNN--YGV---WVD-----EFEDIGL------VDC 142 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G------~~V~viE~~~~~~~~~~--~g~---~~~-----~l~~~~~------~~~ 142 (503)
.-.|+|||||+.|.++|+.|++ ++ +.|+|||.....+.... -|+ |.. .+..+.+ .+.
T Consensus 10 sk~I~IvGGGIiGvctayyLt~-~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~Lsde 88 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTE-HPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEELSDE 88 (380)
T ss_pred ceEEEEECCCceeeeeehhhhc-CCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHHHHh
Confidence 4789999999999999999999 77 79999997654432221 111 211 1111111 111
Q ss_pred hh--hccCc-----eEEEec------CCccc----------------ccCCCccccCHHHHHHHHHHHHHhC-CcEEEEe
Q 010693 143 LD--KTWPM-----TCVFIN------DHKTK----------------YLDRPYGRVSRNILKTKLLENCVSN-GVKFHKA 192 (503)
Q Consensus 143 ~~--~~~~~-----~~~~~~------~~~~~----------------~~~~~~~~v~r~~l~~~L~~~~~~~-gv~~~~~ 192 (503)
.+ ..|.- +.+..+ ++... .-....++|+...|...++..+++. ||++.-.
T Consensus 89 ydGvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V~lv~G 168 (380)
T KOG2852|consen 89 YDGVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGVKLVFG 168 (380)
T ss_pred hcCcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcCeEEEEe
Confidence 11 12321 111111 11000 0113445688899999999999885 4999977
Q ss_pred EEEEEEEeCCEEE-EEeC---C-CcEEEeceEEecCCCCcc
Q 010693 193 KVWHVNHQEFESS-IVCD---D-GNEIKASLIVDASGFASS 228 (503)
Q Consensus 193 ~v~~i~~~~~~~~-v~~~---~-g~~i~a~~vI~A~G~~s~ 228 (503)
+|.++..+...+. +... + ......+.+|.|.|.++.
T Consensus 169 kv~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTs 209 (380)
T KOG2852|consen 169 KVKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTS 209 (380)
T ss_pred eeEEeecccccccccchhhhcCceEEeeeeEEEEecCCCch
Confidence 8888874433221 1111 1 346789999999998863
No 206
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.55 E-value=7e-07 Score=95.79 Aligned_cols=37 Identities=22% Similarity=0.395 Sum_probs=34.2
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLS 121 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~ 121 (503)
.++||+|||+|.+|+++|+.+++ .|.+|+|||+.+..
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~-~G~~v~liEk~~~~ 41 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAAD-SGLEPLIVEKQDKV 41 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHH-CCCcEEEEecCCCC
Confidence 47999999999999999999999 99999999987653
No 207
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.54 E-value=2.3e-06 Score=91.86 Aligned_cols=36 Identities=28% Similarity=0.585 Sum_probs=33.8
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCC
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLS 121 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~ 121 (503)
++||+|||+|++|+++|+.+++ .|.+|+|||+.+..
T Consensus 7 ~~DvvVvG~G~aG~~aA~~aa~-~G~~v~llEk~~~~ 42 (557)
T PRK07843 7 EYDVVVVGSGAAGMVAALTAAH-RGLSTVVVEKAPHY 42 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHH-CCCCEEEEeCCCCC
Confidence 6999999999999999999999 99999999997654
No 208
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.54 E-value=4.4e-07 Score=98.18 Aligned_cols=44 Identities=30% Similarity=0.324 Sum_probs=36.1
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCC--CCCCCCCcccc
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPS--PLSTWPNNYGV 129 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~--~~~~~~~~~g~ 129 (503)
+|||+|||+||+|..+|..+++ .|.+|+|||++ .-.+..-++|+
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~-~G~kV~lie~~~~~lGGtCvn~GC 161 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAME-RGLKVIIFTGDDDSIGGTCVNVGC 161 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHH-CCCcEEEEeCCCCccccceeEeCC
Confidence 6999999999999999999999 99999999975 22333344455
No 209
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.54 E-value=3.7e-08 Score=98.71 Aligned_cols=142 Identities=20% Similarity=0.212 Sum_probs=75.3
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCC-CcEEEEcCCCCCCCCCcccchhHh--hhhcCchhhhhhccCceEEEecCC----
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHS-VKVCCVDPSPLSTWPNNYGVWVDE--FEDIGLVDCLDKTWPMTCVFINDH---- 157 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G-~~V~viE~~~~~~~~~~~g~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~---- 157 (503)
.||+|+||.||++|++|.+|.. .+ .+++.||+.+...|-... ..+. ++---+.+++...-+...+.|-+.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~-~~~~~~~f~e~~~~f~Wh~gm--ll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~ 78 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEE-HGDLKALFLERRPSFSWHPGM--LLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEH 78 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHH-HH---EEEEES-SS--TTGGG----SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHT
T ss_pred ceeEEEEeeCHHHHHHHHHhhh-cCCCCEEEEecCCCCCcCCcc--CCCCCccccccccccCcCcCCCCcccHHHHHHHc
Confidence 5899999999999999999999 65 999999998766553321 1110 111111222222111111111000
Q ss_pred c--ccccCCCccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCC----EEEEEeC----CCcEEEeceEEecCCCC
Q 010693 158 K--TKYLDRPYGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEF----ESSIVCD----DGNEIKASLIVDASGFA 226 (503)
Q Consensus 158 ~--~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~----~~~v~~~----~g~~i~a~~vI~A~G~~ 226 (503)
. ...+...+....|..+.++|.-.+.+.+-.+. +++|++|+..++ .+.|.+. +++++.|+.||.|+|..
T Consensus 79 ~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~ 158 (341)
T PF13434_consen 79 GRLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQ 158 (341)
T ss_dssp T-HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----E
T ss_pred CChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCC
Confidence 0 00111122235688888888777766555465 889999987654 4788873 34589999999999955
Q ss_pred ccc
Q 010693 227 SSF 229 (503)
Q Consensus 227 s~v 229 (503)
..+
T Consensus 159 P~i 161 (341)
T PF13434_consen 159 PRI 161 (341)
T ss_dssp E--
T ss_pred CCC
Confidence 443
No 210
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.53 E-value=5.8e-07 Score=96.13 Aligned_cols=145 Identities=19% Similarity=0.251 Sum_probs=80.7
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcc--c-ch-------------hHhhhhc-Cc--hh-
Q 010693 82 DRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNY--G-VW-------------VDEFEDI-GL--VD- 141 (503)
Q Consensus 82 ~~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~--g-~~-------------~~~l~~~-~~--~~- 141 (503)
....+||+|||+|.||++||+.++ .|.+|+|||+.+..+....+ | .+ .+.+... ++ .+
T Consensus 6 ~~~e~DVlVVG~G~AGl~AAi~A~--~G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~~d~~l 83 (553)
T PRK07395 6 LPSQFDVLVVGSGAAGLYAALCLP--SHLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLCDPEA 83 (553)
T ss_pred ccccCCEEEECccHHHHHHHHHhh--cCCCEEEEEccCCCCCchhhhcccceecccCCCCHHHHHHHHHHhcCCCCCHHH
Confidence 456799999999999999999985 59999999998654321111 1 10 0001110 00 00
Q ss_pred ---hhhh-----cc-CceEEEecCCcc---cc--cCC--Ccc-c-c--CHHHHHHHHHHHHHh-CCcEEE-EeEEEEEEE
Q 010693 142 ---CLDK-----TW-PMTCVFINDHKT---KY--LDR--PYG-R-V--SRNILKTKLLENCVS-NGVKFH-KAKVWHVNH 199 (503)
Q Consensus 142 ---~~~~-----~~-~~~~~~~~~~~~---~~--~~~--~~~-~-v--~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~ 199 (503)
.+.. .| ....+.|+.... .. ... +.. + - .-..+...|.+.+.+ .|++++ ++.++++..
T Consensus 84 v~~~~~~s~~~i~wL~~~Gv~f~~~~~~~~~~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~ 163 (553)
T PRK07395 84 VRFLVEQAPEAIASLVEMGVAFDRHGQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIEIISQALALSLWL 163 (553)
T ss_pred HHHHHHHHHHHHHHHHhcCCeeecCCCceeeecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcEEEECcChhhhee
Confidence 0000 01 011222221100 00 000 000 1 1 135677788888765 599999 899999987
Q ss_pred eC--CEE-EEEe-CCCc--EEEeceEEecCCCCcc
Q 010693 200 QE--FES-SIVC-DDGN--EIKASLIVDASGFASS 228 (503)
Q Consensus 200 ~~--~~~-~v~~-~~g~--~i~a~~vI~A~G~~s~ 228 (503)
++ +.+ .|.. .+|. .+.|+.||.|+|..+.
T Consensus 164 ~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~~~ 198 (553)
T PRK07395 164 EPETGRCQGISLLYQGQITWLRAGAVILATGGGGQ 198 (553)
T ss_pred cCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCCcc
Confidence 63 432 2222 3454 4899999999997543
No 211
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.53 E-value=7e-07 Score=90.92 Aligned_cols=109 Identities=12% Similarity=0.209 Sum_probs=72.4
Q ss_pred cEEEECCCHHHHHHHHHHHc--cCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCC
Q 010693 87 DVIIIGTGPAGLRLAEQVSS--RHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDR 164 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~--~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (503)
.|||||||+||+.+|..|.+ ..+.+|+|||+.+...+.. .... .+ . +
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~----~~~~--------~~-----------~-g------- 49 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSG----MLPG--------MI-----------A-G------- 49 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccc----hhhH--------HH-----------h-e-------
Confidence 48999999999999999975 1468999999765422211 0000 00 0 0
Q ss_pred CccccCHHHHHHHHHHHHHhCCcEEEEeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCccccc
Q 010693 165 PYGRVSRNILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSFVE 231 (503)
Q Consensus 165 ~~~~v~r~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~vr~ 231 (503)
.++...+...+.+.+.+.|++++..+|++++.++. .|.+.+|+++.+|+||.|+|.......
T Consensus 50 ---~~~~~~~~~~~~~~~~~~gv~~~~~~v~~id~~~~--~V~~~~g~~~~yD~LviAtG~~~~~~~ 111 (364)
T TIGR03169 50 ---HYSLDEIRIDLRRLARQAGARFVIAEATGIDPDRR--KVLLANRPPLSYDVLSLDVGSTTPLSG 111 (364)
T ss_pred ---eCCHHHhcccHHHHHHhcCCEEEEEEEEEEecccC--EEEECCCCcccccEEEEccCCCCCCCC
Confidence 01111122223344456799999779999987765 566778888999999999998775433
No 212
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.52 E-value=2.5e-06 Score=90.80 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=33.9
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLST 122 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~ 122 (503)
.++||||||+| ||+++|+.+++ .|.+|+|||+.+..+
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~-~G~~V~vlEk~~~~G 42 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAR-EGLSVALVEATDKFG 42 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHH-CCCcEEEEecCCCCC
Confidence 47999999999 99999999999 999999999987643
No 213
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.51 E-value=1.2e-06 Score=99.86 Aligned_cols=112 Identities=19% Similarity=0.264 Sum_probs=71.0
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLD 163 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (503)
..+||+|||||||||++|+.|++ .|++|+|+|+.+..+ |.+.. ... ...
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar-~G~~V~liD~~~~~G-----G~~~~----------------------~~~---~~~ 210 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAAR-AGARVILVDEQPEAG-----GSLLS----------------------EAE---TID 210 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHh-CCCcEEEEecCCCCC-----Ceeec----------------------ccc---ccC
Confidence 46899999999999999999999 999999999865432 11100 000 000
Q ss_pred CCccccCHHHHHHHHHHHHHhC-CcEEE-EeEEEEEEEeCCEEEEE-e--------CC---C--cEEEeceEEecCCCCc
Q 010693 164 RPYGRVSRNILKTKLLENCVSN-GVKFH-KAKVWHVNHQEFESSIV-C--------DD---G--NEIKASLIVDASGFAS 227 (503)
Q Consensus 164 ~~~~~v~r~~l~~~L~~~~~~~-gv~~~-~~~v~~i~~~~~~~~v~-~--------~~---g--~~i~a~~vI~A~G~~s 227 (503)
..+...+...+.+++.+. +++++ +++|..+...+....+. . .. + .+++++.||.|+|...
T Consensus 211 ----g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~ 286 (985)
T TIGR01372 211 ----GKPAADWAAATVAELTAMPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHE 286 (985)
T ss_pred ----CccHHHHHHHHHHHHhcCCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCC
Confidence 012233444566666554 59999 88998875422111111 0 00 1 1689999999999876
Q ss_pred ccc
Q 010693 228 SFV 230 (503)
Q Consensus 228 ~vr 230 (503)
+..
T Consensus 287 r~~ 289 (985)
T TIGR01372 287 RPL 289 (985)
T ss_pred cCC
Confidence 543
No 214
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.51 E-value=1.8e-06 Score=92.70 Aligned_cols=35 Identities=31% Similarity=0.512 Sum_probs=33.4
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
.++||||||+|.|||++|+.+++ .|.+|+|||+.+
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~-~G~~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELAD-AGKRVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence 46999999999999999999999 999999999987
No 215
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.48 E-value=9.3e-07 Score=95.24 Aligned_cols=37 Identities=22% Similarity=0.385 Sum_probs=34.3
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLS 121 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~ 121 (503)
.++||||||+|+||+++|+.+++ +|.+|+|||+.+..
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae-~G~~VivlEk~~~~ 46 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAA-RGLDTLVVEKSAHF 46 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHH-CCCcEEEEEcCCCC
Confidence 46999999999999999999999 99999999998654
No 216
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.48 E-value=5.7e-07 Score=95.52 Aligned_cols=58 Identities=12% Similarity=0.134 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHh-CCcEEE-EeEEEEEEEeCCEEE-EEeC-CCc--EEEeceEEecCCCCcc
Q 010693 171 RNILKTKLLENCVS-NGVKFH-KAKVWHVNHQEFESS-IVCD-DGN--EIKASLIVDASGFASS 228 (503)
Q Consensus 171 r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~~~~~~-v~~~-~g~--~i~a~~vI~A~G~~s~ 228 (503)
-..+.+.|.+.+.+ .|++++ ++.|+++..+++.+. |.+. ++. .+.|+.||.|+|..+.
T Consensus 135 G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~~ 198 (513)
T PRK07512 135 GAAIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGIGG 198 (513)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCCcC
Confidence 35678888888876 489999 889999876665432 3332 232 5899999999997654
No 217
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.48 E-value=4.6e-07 Score=102.11 Aligned_cols=97 Identities=19% Similarity=0.217 Sum_probs=65.3
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCC
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDR 164 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (503)
..+|+|||||||||+||+.|++ .|++|+|||+.+..+.--.| |+ +
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar-~G~~VtVfE~~~~~GG~l~y----------GI---------------P--------- 350 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAV-EGFPVTVFEAFHDLGGVLRY----------GI---------------P--------- 350 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHH-CCCeEEEEeeCCCCCceEEc----------cC---------------C---------
Confidence 5789999999999999999999 99999999986532210000 00 0
Q ss_pred CccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCC
Q 010693 165 PYGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFA 226 (503)
Q Consensus 165 ~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~ 226 (503)
.+ .+.+. +.+...+.+++.|++|+ ++.+- ..+++++.....+|.||.|+|.+
T Consensus 351 ~~-rlp~~-vi~~~i~~l~~~Gv~f~~n~~vG--------~dit~~~l~~~~yDAV~LAtGA~ 403 (944)
T PRK12779 351 EF-RLPNQ-LIDDVVEKIKLLGGRFVKNFVVG--------KTATLEDLKAAGFWKIFVGTGAG 403 (944)
T ss_pred CC-cChHH-HHHHHHHHHHhhcCeEEEeEEec--------cEEeHHHhccccCCEEEEeCCCC
Confidence 11 12232 33444566677899998 76552 12445554456789999999985
No 218
>PRK12831 putative oxidoreductase; Provisional
Probab=98.47 E-value=4.4e-07 Score=95.13 Aligned_cols=100 Identities=25% Similarity=0.353 Sum_probs=64.5
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCccccc
Q 010693 83 RIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYL 162 (503)
Q Consensus 83 ~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (503)
....||+||||||||+++|..|++ .|++|+|+|+.+..+ |.+ ..++ +.
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~-~G~~V~v~e~~~~~G-----G~l-----~~gi---------------p~------ 185 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAK-MGYDVTIFEALHEPG-----GVL-----VYGI---------------PE------ 185 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHh-CCCeEEEEecCCCCC-----Cee-----eecC---------------CC------
Confidence 356899999999999999999999 999999999765322 111 0000 00
Q ss_pred CCCccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCC-cEEEeceEEecCCCC
Q 010693 163 DRPYGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDG-NEIKASLIVDASGFA 226 (503)
Q Consensus 163 ~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g-~~i~a~~vI~A~G~~ 226 (503)
+ .+....+.....+.+.+.|++++ ++.+.. .+..++. +++.+|.||.|+|.+
T Consensus 186 ---~-~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~--------~v~~~~~~~~~~~d~viiAtGa~ 239 (464)
T PRK12831 186 ---F-RLPKETVVKKEIENIKKLGVKIETNVVVGK--------TVTIDELLEEEGFDAVFIGSGAG 239 (464)
T ss_pred ---c-cCCccHHHHHHHHHHHHcCCEEEcCCEECC--------cCCHHHHHhccCCCEEEEeCCCC
Confidence 0 11122233444566777899998 775521 1222332 235699999999984
No 219
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.46 E-value=3.5e-06 Score=95.38 Aligned_cols=39 Identities=28% Similarity=0.456 Sum_probs=35.3
Q ss_pred CCCCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCC
Q 010693 81 SDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPL 120 (503)
Q Consensus 81 ~~~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~ 120 (503)
....++||+|||||.|||++|+.+++ .|.+|+|+|+.+.
T Consensus 9 ~~~~~~DVlVVG~G~AGl~AAl~Aa~-~G~~V~lleK~~~ 47 (897)
T PRK13800 9 ALRLDCDVLVIGGGTAGTMAALTAAE-HGANVLLLEKAHV 47 (897)
T ss_pred cceeecCEEEECcCHHHHHHHHHHHH-CCCeEEEEecccc
Confidence 44567999999999999999999999 9999999998764
No 220
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.45 E-value=1.4e-06 Score=91.31 Aligned_cols=110 Identities=17% Similarity=0.313 Sum_probs=70.6
Q ss_pred cEEEECCCHHHHHHHHHHHccCC--CcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCC
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHS--VKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDR 164 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G--~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (503)
+|+|||||+||+++|..|++ .| .+|+|||+.+...+. ..++.. +..+. ..
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~-~~~~~~Vtli~~~~~~~~~-----------~~~~~~-----------~~~~~----~~- 53 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKR-LNKELEITVYEKTDIVSFG-----------ACGLPY-----------FVGGF----FD- 53 (444)
T ss_pred eEEEECCcHHHHHHHHHHHH-HCCCCcEEEEECCCcceee-----------cCCCce-----------Eeccc----cC-
Confidence 69999999999999999998 65 599999987543210 000000 00000 00
Q ss_pred CccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeC-CCcEEE--eceEEecCCCCccc
Q 010693 165 PYGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCD-DGNEIK--ASLIVDASGFASSF 229 (503)
Q Consensus 165 ~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~-~g~~i~--a~~vI~A~G~~s~v 229 (503)
....+.....+.+.+.|++++ +++|+.++.++..+.+... +|.+++ +|.+|.|+|.....
T Consensus 54 -----~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~ 117 (444)
T PRK09564 54 -----DPNTMIARTPEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPII 117 (444)
T ss_pred -----CHHHhhcCCHHHHHHCCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCC
Confidence 001111122233445799998 8999999888777766542 355666 99999999987654
No 221
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.45 E-value=2.3e-06 Score=81.93 Aligned_cols=39 Identities=31% Similarity=0.470 Sum_probs=35.6
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCC
Q 010693 82 DRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLS 121 (503)
Q Consensus 82 ~~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~ 121 (503)
++..+||||||+|.|||.+|..||. +|.+|+|+|+..+.
T Consensus 2 d~~~~dvivvgaglaglvaa~elA~-aG~~V~ildQEgeq 40 (552)
T COG3573 2 DGLTADVIVVGAGLAGLVAAAELAD-AGKRVLILDQEGEQ 40 (552)
T ss_pred CcccccEEEECccHHHHHHHHHHHh-cCceEEEEcccccc
Confidence 4568999999999999999999999 99999999987654
No 222
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.44 E-value=4.9e-06 Score=89.61 Aligned_cols=33 Identities=27% Similarity=0.468 Sum_probs=30.8
Q ss_pred cEEEECCCHHHHHHHHHHH----ccCCCcEEEEcCCCC
Q 010693 87 DVIIIGTGPAGLRLAEQVS----SRHSVKVCCVDPSPL 120 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La----~~~G~~V~viE~~~~ 120 (503)
||+|||+|.|||+||+.++ + .|.+|+|+|+.+.
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e-~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDK-KGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhh-CCCeEEEEEccCC
Confidence 8999999999999999998 7 8999999998764
No 223
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=3.8e-07 Score=87.53 Aligned_cols=115 Identities=18% Similarity=0.277 Sum_probs=84.4
Q ss_pred CCCCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCccc
Q 010693 81 SDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTK 160 (503)
Q Consensus 81 ~~~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (503)
.++..|||+||||||||.++|++.|| +|++.-++-- .+|. +.++.++++..+.
T Consensus 207 ~~k~~yDVLvVGgGPAgaaAAiYaAR-KGiRTGl~ae--------rfGG--QvldT~~IENfIs---------------- 259 (520)
T COG3634 207 NAKDAYDVLVVGGGPAGAAAAIYAAR-KGIRTGLVAE--------RFGG--QVLDTMGIENFIS---------------- 259 (520)
T ss_pred hccCCceEEEEcCCcchhHHHHHHHh-hcchhhhhhh--------hhCC--eeccccchhheec----------------
Confidence 35677999999999999999999999 9998865531 1222 1233444443211
Q ss_pred ccCCCccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEe---CCEEEEEeCCCcEEEeceEEecCCCCc
Q 010693 161 YLDRPYGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQ---EFESSIVCDDGNEIKASLIVDASGFAS 227 (503)
Q Consensus 161 ~~~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~---~~~~~v~~~~g~~i~a~~vI~A~G~~s 227 (503)
-++ .+-.+|...|.++.++..|++. -.++++++.. ++-..|++++|-.+.++-||.|+|+.-
T Consensus 260 ---v~~--teGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArW 325 (520)
T COG3634 260 ---VPE--TEGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARW 325 (520)
T ss_pred ---ccc--ccchHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcch
Confidence 111 2345688899999999999998 5677777763 457899999999999999999999754
No 224
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.43 E-value=4e-06 Score=97.24 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=36.2
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCC
Q 010693 82 DRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLST 122 (503)
Q Consensus 82 ~~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~ 122 (503)
....+||||||+|.||++||+.+++ .|.+|+|+|+.+..+
T Consensus 406 ~t~~~DVvVVG~G~AGl~AAi~Aae-~Ga~VivlEK~~~~G 445 (1167)
T PTZ00306 406 GSLPARVIVVGGGLAGCSAAIEAAS-CGAQVILLEKEAKLG 445 (1167)
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEEccCCCC
Confidence 4567999999999999999999999 999999999987643
No 225
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.42 E-value=8.7e-06 Score=81.68 Aligned_cols=61 Identities=23% Similarity=0.278 Sum_probs=52.4
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEE-EEeCCCcEEEeceEEecCCCCcc
Q 010693 167 GRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESS-IVCDDGNEIKASLIVDASGFASS 228 (503)
Q Consensus 167 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~-v~~~~g~~i~a~~vI~A~G~~s~ 228 (503)
++++...+...|.+.+.+.|++++ +++|+++..+++.+. |.+.+| +++||.||.|+|.++.
T Consensus 132 g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 132 AHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAG 194 (337)
T ss_pred ceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhh
Confidence 457889999999999999999999 899999998777654 566666 7999999999998874
No 226
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.42 E-value=2.5e-06 Score=87.25 Aligned_cols=98 Identities=18% Similarity=0.280 Sum_probs=77.4
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
-+|+|||||+.|+-+|..|++ .|.+|+++|+.+.... . .
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~-~g~~Vtlv~~~~~~l~------------~------------------------~---- 180 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCR-AGKAVTLVDNAASLLA------------S------------------------L---- 180 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHh-cCCeEEEEecCCcccc------------h------------------------h----
Confidence 469999999999999999999 9999999997542100 0 0
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCcc
Q 010693 166 YGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASS 228 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~ 228 (503)
. ...+...+.+.+++.|++++ +++|+++..+++.+.+.+.+|+++.||.||.|+|..+.
T Consensus 181 ---~-~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~ 240 (377)
T PRK04965 181 ---M-PPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPN 240 (377)
T ss_pred ---C-CHHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcc
Confidence 0 01233556666777899999 89999998877777888889999999999999998663
No 227
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.42 E-value=1.7e-06 Score=93.58 Aligned_cols=31 Identities=29% Similarity=0.309 Sum_probs=29.8
Q ss_pred EEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 88 VIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 88 vvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
|+|||+|+|||+||+.+++ .|.+|+|+|+.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae-~G~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAE-LGYHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHH-cCCCEEEEEecC
Confidence 6999999999999999999 999999999986
No 228
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.41 E-value=6.2e-06 Score=83.93 Aligned_cols=58 Identities=19% Similarity=0.094 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEE-EEeCCC--cEEEeceEEecCCCC-cc
Q 010693 171 RNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESS-IVCDDG--NEIKASLIVDASGFA-SS 228 (503)
Q Consensus 171 r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~-v~~~~g--~~i~a~~vI~A~G~~-s~ 228 (503)
-..+.+.|.+.+++.|++++ +++|+++..+++.+. |.+.++ .+++||.||.|+|.+ |.
T Consensus 262 G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~ 324 (419)
T TIGR03378 262 GIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSN 324 (419)
T ss_pred HHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCH
Confidence 45777789999999999999 789999998888666 444555 479999999999998 74
No 229
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.41 E-value=6.3e-07 Score=93.83 Aligned_cols=131 Identities=17% Similarity=0.136 Sum_probs=69.0
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHh--hhhcCchhhhhhccCceEEEecCCccccc
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDE--FEDIGLVDCLDKTWPMTCVFINDHKTKYL 162 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (503)
+|||+|||+||+|..+| ++. .|.+|++||++.-.+..-++|+-... +....+...+.. .....+..... .+
T Consensus 2 ~yD~vvIG~G~~g~~aa--~~~-~g~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~-~~~~g~~~~~~---~~ 74 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPD--PRF-ADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIGE-SARLGIDAEID---SV 74 (452)
T ss_pred CcCEEEECCCHHHHHHH--HHH-CCCeEEEEeCCCCCCeeeccCccchHHHHHHHHHHHHHHH-hhccCeeCCCC---cc
Confidence 59999999999998875 456 79999999986555555555653221 111111111111 00111110000 01
Q ss_pred CCCccc-cCHH-H-HHHHHH-----H--HHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCccc
Q 010693 163 DRPYGR-VSRN-I-LKTKLL-----E--NCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSF 229 (503)
Q Consensus 163 ~~~~~~-v~r~-~-l~~~L~-----~--~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~v 229 (503)
.+.. +.+. . ..+.+. . ..++.|++++ +..+.. +. .+|.+.+|+++++|.||.|+|....+
T Consensus 75 --d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~---~~--~~V~~~~g~~~~~d~lIiATGs~p~~ 145 (452)
T TIGR03452 75 --RWPDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFV---GP--RTLRTGDGEEITGDQIVIAAGSRPYI 145 (452)
T ss_pred --CHHHHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEe---cC--CEEEECCCcEEEeCEEEEEECCCCCC
Confidence 1111 1111 0 111111 1 1123799988 443222 22 34555677789999999999987644
No 230
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.41 E-value=3.1e-07 Score=69.06 Aligned_cols=31 Identities=26% Similarity=0.349 Sum_probs=28.0
Q ss_pred EECCCHHHHHHHHHHHccCCCcEEEEcCCCCC
Q 010693 90 IIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLS 121 (503)
Q Consensus 90 IVGgGpaGl~~A~~La~~~G~~V~viE~~~~~ 121 (503)
|||||++||++|+.|++ .|++|+|+|+.+..
T Consensus 1 IiGaG~sGl~aA~~L~~-~g~~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAK-AGYRVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHH-TTSEEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHH-CCCcEEEEecCccc
Confidence 89999999999999999 99999999987654
No 231
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=2.8e-06 Score=76.93 Aligned_cols=124 Identities=17% Similarity=0.175 Sum_probs=86.4
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
-.|+|||.|||+-.+|+.+++ +.++.+++|-.-. +..+ . +..+.....-......|
T Consensus 9 e~v~IiGSGPAa~tAAiYaar-aelkPllfEG~~~----~~i~-------p------------GGQLtTTT~veNfPGFP 64 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAAR-AELKPLLFEGMMA----NGIA-------P------------GGQLTTTTDVENFPGFP 64 (322)
T ss_pred eeEEEEccCchHHHHHHHHhh-cccCceEEeeeec----cCcC-------C------------CceeeeeeccccCCCCC
Confidence 479999999999999999999 9999999993210 0000 0 00000000000011112
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEEEeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCcccccccCC
Q 010693 166 YGRVSRNILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSFVEYDKP 235 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~vr~~~~~ 235 (503)
-+ +.-..|-+.++++..+-|.+++...|.+++.....+++.++ .+.+.||.||.|+|+..+-..+++.
T Consensus 65 dg-i~G~~l~d~mrkqs~r~Gt~i~tEtVskv~~sskpF~l~td-~~~v~~~avI~atGAsAkRl~~pg~ 132 (322)
T KOG0404|consen 65 DG-ITGPELMDKMRKQSERFGTEIITETVSKVDLSSKPFKLWTD-ARPVTADAVILATGASAKRLHLPGE 132 (322)
T ss_pred cc-cccHHHHHHHHHHHHhhcceeeeeehhhccccCCCeEEEec-CCceeeeeEEEecccceeeeecCCC
Confidence 22 55677889999999999999998899999988887888775 4579999999999998865444444
No 232
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.40 E-value=3.5e-06 Score=90.91 Aligned_cols=57 Identities=23% Similarity=0.192 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEE-EEeC-CCc--EEEe-ceEEecCCCCcc
Q 010693 172 NILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESS-IVCD-DGN--EIKA-SLIVDASGFASS 228 (503)
Q Consensus 172 ~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~-v~~~-~g~--~i~a-~~vI~A~G~~s~ 228 (503)
..+...|.+.+++.|++++ +++|+++..+++.+. |.+. +|+ ++.| +.||.|+|..+.
T Consensus 221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~ 283 (578)
T PRK12843 221 NALIGRLLYSLRARGVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGGFNR 283 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCCccc
Confidence 3466778888988999999 999999887655433 3333 343 4776 689999997765
No 233
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.39 E-value=3.2e-06 Score=85.36 Aligned_cols=59 Identities=20% Similarity=0.327 Sum_probs=48.6
Q ss_pred cCHHHHHHHHHHHHHhC-CcEEE-EeEEEEEEEeCCE-EEEEeCC---C--cEEEeceEEecCCCCc
Q 010693 169 VSRNILKTKLLENCVSN-GVKFH-KAKVWHVNHQEFE-SSIVCDD---G--NEIKASLIVDASGFAS 227 (503)
Q Consensus 169 v~r~~l~~~L~~~~~~~-gv~~~-~~~v~~i~~~~~~-~~v~~~~---g--~~i~a~~vI~A~G~~s 227 (503)
||--.|-+.|.+.+.+. |++++ +++|+++++.+++ |.|.+.| | .+++|++|+...|..|
T Consensus 178 VnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~a 244 (488)
T PF06039_consen 178 VNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGA 244 (488)
T ss_pred ccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHh
Confidence 77788888888888775 99999 9999999998765 8887643 2 4799999998888776
No 234
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=98.38 E-value=1.5e-05 Score=75.50 Aligned_cols=139 Identities=14% Similarity=0.162 Sum_probs=80.4
Q ss_pred cCHHHHHHHHHHHHHhCCcEEEEeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCcccccccCCCCCccceeEEEEE
Q 010693 169 VSRNILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSFVEYDKPRNHGYQIAHGILA 248 (503)
Q Consensus 169 v~r~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~vr~~~~~~~~~~~~~~g~~~ 248 (503)
.+-..+..+|.+++.++|+++.+.+|.+++.-. + -.+|+||.|+|-.+.... ... ..+...|...
T Consensus 148 sE~~~ylpyl~k~l~e~Gvef~~r~v~~l~E~~--------~---~~~DVivNCtGL~a~~L~---gDd-~~yPiRGqVl 212 (342)
T KOG3923|consen 148 SEGPKYLPYLKKRLTENGVEFVQRRVESLEEVA--------R---PEYDVIVNCTGLGAGKLA---GDD-DLYPIRGQVL 212 (342)
T ss_pred ccchhhhHHHHHHHHhcCcEEEEeeeccHHHhc--------c---CCCcEEEECCcccccccc---CCc-ceeeccceEE
Confidence 456889999999999999999988998887321 1 378999999998775321 111 2444567777
Q ss_pred EecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCCeEEEecccccCC--CCCCHHH---HHHHHHHHH
Q 010693 249 EVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNLVFLEETSLVSR--PVLSYKE---VKRRMAARL 323 (503)
Q Consensus 249 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~~v~~~~~~~~--~~~~~~~---~~~~l~~~l 323 (503)
.++.+ .-... +..+. .. -|++|..+.+++ +.+..... ...+.++ +.++..+..
T Consensus 213 ~V~Ap-Wvkhf----------------~~~D~---~~-ty~iP~~~~V~l-Gg~~Q~g~w~~ei~~~D~~dIl~rc~aL~ 270 (342)
T KOG3923|consen 213 KVDAP-WVKHF----------------IYRDF---SR-TYIIPGTESVTL-GGTKQEGNWNLEITDEDRRDILERCCALE 270 (342)
T ss_pred EeeCC-ceeEE----------------EEecC---Cc-cEEecCCceEEE-ccccccCcccCcCChhhHHHHHHHHHHhC
Confidence 77653 11110 01122 12 278888777654 32222111 2333444 444444444
Q ss_pred hhcCCccceEeecceecccCCCC
Q 010693 324 RHMGIRVKRVIEDEKCLIPMGGP 346 (503)
Q Consensus 324 ~~~~~~~~~i~~~~~~~~p~~~~ 346 (503)
+.+ +-.+++....+..|-+..
T Consensus 271 P~l--~~a~ii~E~vGlRP~Rk~ 291 (342)
T KOG3923|consen 271 PSL--RHAEIIREWVGLRPGRKQ 291 (342)
T ss_pred ccc--ccceehhhhhcccCCCCc
Confidence 433 334566666677776533
No 235
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.38 E-value=1.5e-06 Score=96.90 Aligned_cols=97 Identities=23% Similarity=0.270 Sum_probs=63.4
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLD 163 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (503)
...+|+||||||||+++|+.|++ .|++|+|||+.+..+. ... .+ .+.
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar-~G~~VtV~Ek~~~~GG-----~lr-----~~---------------IP~------- 584 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLAR-AGHPVTVFEREENAGG-----VVK-----NI---------------IPQ------- 584 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-cCCeEEEEecccccCc-----cee-----ee---------------ccc-------
Confidence 45689999999999999999999 9999999998654221 100 00 010
Q ss_pred CCccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCc
Q 010693 164 RPYGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFAS 227 (503)
Q Consensus 164 ~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s 227 (503)
+ ++.+..+ ....+.+.+.|++++ ++.+ ++. +++.....+|.||.|+|.+.
T Consensus 585 --~-Rlp~evL-~~die~l~~~GVe~~~gt~V-di~---------le~L~~~gYDaVILATGA~~ 635 (1019)
T PRK09853 585 --F-RIPAELI-QHDIEFVKAHGVKFEFGCSP-DLT---------VEQLKNEGYDYVVVAIGADK 635 (1019)
T ss_pred --c-cccHHHH-HHHHHHHHHcCCEEEeCcee-EEE---------hhhheeccCCEEEECcCCCC
Confidence 0 1122222 333455667899999 7766 222 22233456899999999874
No 236
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.37 E-value=4.1e-06 Score=86.25 Aligned_cols=108 Identities=16% Similarity=0.171 Sum_probs=70.4
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCC--cEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCccccc
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSV--KVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYL 162 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~--~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (503)
..+|+|||||+||+.+|..|++ .|. +|+|+++.+...+.+. ... ...+.. ....
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~-~~~~~~I~li~~e~~~~y~r~-~l~---------~~~~~~----------~~~~--- 58 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQ-QGFTGELHLFSDERHLPYERP-PLS---------KSMLLE----------DSPQ--- 58 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHh-hCCCCCEEEeCCCCCCCCCCC-CCC---------HHHHCC----------CCcc---
Confidence 4579999999999999999999 886 7999998654332111 000 000000 0000
Q ss_pred CCCccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCcc
Q 010693 163 DRPYGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASS 228 (503)
Q Consensus 163 ~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~ 228 (503)
.. .+... +...+.|++++ ++.|+.++.++. .|.+.+|+++.+|.||.|+|....
T Consensus 59 --~~-~~~~~-------~~~~~~~i~~~~g~~V~~id~~~~--~v~~~~g~~~~yd~LViATGs~~~ 113 (396)
T PRK09754 59 --LQ-QVLPA-------NWWQENNVHLHSGVTIKTLGRDTR--ELVLTNGESWHWDQLFIATGAAAR 113 (396)
T ss_pred --cc-ccCCH-------HHHHHCCCEEEcCCEEEEEECCCC--EEEECCCCEEEcCEEEEccCCCCC
Confidence 00 00011 11235799999 889999987654 456678889999999999998864
No 237
>PLN03000 amine oxidase
Probab=98.36 E-value=5.8e-05 Score=83.13 Aligned_cols=40 Identities=25% Similarity=0.390 Sum_probs=35.6
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCC
Q 010693 82 DRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLST 122 (503)
Q Consensus 82 ~~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~ 122 (503)
+....+|+|||||++|+.+|..|++ .|++|+|+|+++..+
T Consensus 181 ~~~~~~VvIIGaG~aGL~aA~~L~~-~G~~V~VlE~~~riG 220 (881)
T PLN03000 181 QSSKSSVVIVGAGLSGLAAARQLMR-FGFKVTVLEGRKRPG 220 (881)
T ss_pred cCCCCCEEEECccHHHHHHHHHHHH-CCCcEEEEEccCcCC
Confidence 3456899999999999999999999 999999999986653
No 238
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.36 E-value=5.9e-06 Score=86.12 Aligned_cols=58 Identities=16% Similarity=0.140 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHhCCcEEE-EeEEEEEEEe--CCEEE-EEeC-CCcEEEeceEEecCCCCcc
Q 010693 171 RNILKTKLLENCVSNGVKFH-KAKVWHVNHQ--EFESS-IVCD-DGNEIKASLIVDASGFASS 228 (503)
Q Consensus 171 r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~--~~~~~-v~~~-~g~~i~a~~vI~A~G~~s~ 228 (503)
-..+.+.|.+.+++.|++++ +++|+++..+ ++.+. |... ++.++.|+.||.|+|..+.
T Consensus 122 g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~ 184 (432)
T TIGR02485 122 GKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGA 184 (432)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCccc
Confidence 35678889999999999999 9999999876 34332 3433 3357999999999996543
No 239
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.35 E-value=3.2e-06 Score=88.26 Aligned_cols=111 Identities=9% Similarity=0.110 Sum_probs=70.1
Q ss_pred cEEEECCCHHHHHHHHHHHccC--CCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCC
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRH--SVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDR 164 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~--G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (503)
+|+|||||+||+.+|..|++ . +.+|+|||+.+...+.. |+. .. .+. .... ...
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~-~~~~~~I~li~~~~~~~~~~-~~l--p~--------~~~-----------~~~~-~~~- 57 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRR-LDKESDIIIFEKDRDMSFAN-CAL--PY--------YIG-----------EVVE-DRK- 57 (438)
T ss_pred eEEEECCcHHHHHHHHHHHh-hCCCCCEEEEECCCCccccc-CCc--ch--------hhc-----------CccC-CHH-
Confidence 79999999999999999988 5 68999999876433211 100 00 000 0000 000
Q ss_pred CccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCC-Cc--EEEeceEEecCCCCccc
Q 010693 165 PYGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDD-GN--EIKASLIVDASGFASSF 229 (503)
Q Consensus 165 ~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~-g~--~i~a~~vI~A~G~~s~v 229 (503)
..-.+....+ ..+.|++++ +++|++++.++..+.+...+ ++ ++.+|.+|.|+|.....
T Consensus 58 ~~~~~~~~~~-------~~~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~ 119 (438)
T PRK13512 58 YALAYTPEKF-------YDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANS 119 (438)
T ss_pred HcccCCHHHH-------HHhCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCC
Confidence 0000111111 234689998 89999999888777766543 22 47899999999987753
No 240
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.35 E-value=1.5e-06 Score=85.76 Aligned_cols=35 Identities=34% Similarity=0.594 Sum_probs=30.4
Q ss_pred CcEEEECCCHHHHHHHHHHHccCC-CcEEEEcCCCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHS-VKVCCVDPSPLS 121 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G-~~V~viE~~~~~ 121 (503)
||+||||+|++|+.+|..|++ .| .+|+|||+++..
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~-~~~~~VlvlEaG~~~ 36 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSE-AGNKKVLVLEAGPRY 36 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTT-STTS-EEEEESSBSC
T ss_pred CCEEEECcCHHHHHHHHHHhh-CCCCcEEEEEccccC
Confidence 799999999999999999999 87 799999998653
No 241
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=1e-06 Score=87.93 Aligned_cols=141 Identities=16% Similarity=0.189 Sum_probs=89.2
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcc---------cchhHhhhhcCchhhhhhccCceEE
Q 010693 82 DRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNY---------GVWVDEFEDIGLVDCLDKTWPMTCV 152 (503)
Q Consensus 82 ~~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~---------g~~~~~l~~~~~~~~~~~~~~~~~~ 152 (503)
....|||||||||-||+-+|.+.|+ .|-+.+++-.+-....--.| |..+.++++++= ......+...+
T Consensus 25 ~~~~~dVvVIGgGHAG~EAAaAaaR-~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdG--l~~rvcD~s~v 101 (679)
T KOG2311|consen 25 STSTYDVVVIGGGHAGCEAAAAAAR-LGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDG--LCSRVCDQSGV 101 (679)
T ss_pred CCCcccEEEECCCccchHHHHHHHh-cCCceEEeecccccccccccCcccCCcccceeeeeehhhcc--hHhhhhhhhhh
Confidence 3568999999999999999999999 99999999865332111111 112223333321 00111111111
Q ss_pred Eec---CCcccccCCCccccCHHHHHHHHHHHHHh-CCcEEEEeEEEEEEEeCC------EEEEEeCCCcEEEeceEEec
Q 010693 153 FIN---DHKTKYLDRPYGRVSRNILKTKLLENCVS-NGVKFHKAKVWHVNHQEF------ESSIVCDDGNEIKASLIVDA 222 (503)
Q Consensus 153 ~~~---~~~~~~~~~~~~~v~r~~l~~~L~~~~~~-~gv~~~~~~v~~i~~~~~------~~~v~~~~g~~i~a~~vI~A 222 (503)
.+. .......-.+.+++||+.+.+.+.+.+.+ .+.+++...|.++...+. ...|.+.||..+.|+-||..
T Consensus 102 q~k~LNrs~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~ire~~V~dliv~~~~~~~~~~~gV~l~dgt~v~a~~VilT 181 (679)
T KOG2311|consen 102 QYKVLNRSKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIREGAVADLIVEDPDDGHCVVSGVVLVDGTVVYAESVILT 181 (679)
T ss_pred hHHHhhccCCCcccChHHhhhHHHHHHHHHHHhccCCcchhhhhhhhheeeccCCCCceEEEEEEEecCcEeccceEEEe
Confidence 110 01111112344568899999998888766 667888888888765432 34567789999999999999
Q ss_pred CCC
Q 010693 223 SGF 225 (503)
Q Consensus 223 ~G~ 225 (503)
+|.
T Consensus 182 TGT 184 (679)
T KOG2311|consen 182 TGT 184 (679)
T ss_pred ecc
Confidence 995
No 242
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.33 E-value=5.2e-06 Score=85.52 Aligned_cols=96 Identities=20% Similarity=0.337 Sum_probs=75.1
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
-+|+|||||+.|+-+|..|++ .|.+|+|+|+.+.... .
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~-~g~~Vtlv~~~~~~l~------------~----------------------------- 182 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQ-RRCKVTVIELAATVMG------------R----------------------------- 182 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHH-cCCeEEEEecCCcchh------------h-----------------------------
Confidence 469999999999999999999 9999999997542100 0
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCc
Q 010693 166 YGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFAS 227 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s 227 (503)
.....+.+.+.+.+++.|++++ +++|++++. ++.+.+.+.+|+++.||+||.|.|...
T Consensus 183 ---~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~~p 241 (396)
T PRK09754 183 ---NAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGISA 241 (396)
T ss_pred ---hcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCCCh
Confidence 0012234556666778899999 899999976 456678888899999999999999865
No 243
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.31 E-value=3.8e-06 Score=85.07 Aligned_cols=143 Identities=22% Similarity=0.350 Sum_probs=85.8
Q ss_pred cEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcc---cc-------------hhHhhhhc-Cc--hhhhh---
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNY---GV-------------WVDEFEDI-GL--VDCLD--- 144 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~---g~-------------~~~~l~~~-~~--~~~~~--- 144 (503)
||+|||+|+|||++|+.|++ . ++|+|+-|.+.......| |. ..+.|.+- |+ ++.+.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~-~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv 86 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAP-S-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIV 86 (518)
T ss_pred cEEEECCcHHHHHHHHhCCC-C-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 89999999999999999999 6 999999988765422222 11 00111110 11 00000
Q ss_pred -h-----cc-CceEEEecCCccc--ccCCCcc----c------cCHHHHHHHHHHHHHh-CCcEEE-EeEEEEEEEeCC-
Q 010693 145 -K-----TW-PMTCVFINDHKTK--YLDRPYG----R------VSRNILKTKLLENCVS-NGVKFH-KAKVWHVNHQEF- 202 (503)
Q Consensus 145 -~-----~~-~~~~~~~~~~~~~--~~~~~~~----~------v~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~~~- 202 (503)
. .| -...+.|+..... .+...-+ + -.-+.+...|.+++.+ ++++++ ++.+.++..+++
T Consensus 87 ~~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~ 166 (518)
T COG0029 87 SEAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGI 166 (518)
T ss_pred HhHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCc
Confidence 0 00 0122333322210 0000000 0 1246778888888877 899999 889999988887
Q ss_pred EE-EEEe--CCC--cEEEeceEEecCCCCccccc
Q 010693 203 ES-SIVC--DDG--NEIKASLIVDASGFASSFVE 231 (503)
Q Consensus 203 ~~-~v~~--~~g--~~i~a~~vI~A~G~~s~vr~ 231 (503)
.+ .|.+ .++ .++.++.||.|+|.-+.+-.
T Consensus 167 ~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly~ 200 (518)
T COG0029 167 GVAGVLVLNRNGELGTFRAKAVVLATGGLGGLYA 200 (518)
T ss_pred eEeEEEEecCCCeEEEEecCeEEEecCCCccccc
Confidence 44 3333 323 47999999999998776643
No 244
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.31 E-value=2.2e-06 Score=96.07 Aligned_cols=36 Identities=25% Similarity=0.336 Sum_probs=33.2
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPL 120 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~ 120 (503)
...+|+||||||||++||+.|++ .|++|+|||+.+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr-~G~~VTV~Ek~~~ 571 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLAR-AGHPVTVFEKKEK 571 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-CCCeEEEEecccc
Confidence 45899999999999999999999 9999999998654
No 245
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.30 E-value=5.9e-06 Score=86.82 Aligned_cols=38 Identities=18% Similarity=0.185 Sum_probs=33.5
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccC----CCcEEEEcCCCCCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRH----SVKVCCVDPSPLST 122 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~----G~~V~viE~~~~~~ 122 (503)
...+++|||||+|||++|..|++ . |.+|+|+|+.+..+
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~-dg~~~G~~VtIlEk~~~~G 62 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIR-DGQMPGENITILEELDVPG 62 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH-ccCCCCCcEEEEeCCCCCC
Confidence 35789999999999999999998 5 68999999987653
No 246
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.30 E-value=6.7e-06 Score=84.15 Aligned_cols=108 Identities=13% Similarity=0.176 Sum_probs=69.2
Q ss_pred CcEEEECCCHHHHHHHHHHHc-cCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSS-RHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDR 164 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~-~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (503)
.+|+|||||+||+.+|..|.+ ....+|+||++++...+.+. .+ ...+ ...
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~--~l---------~~~~-----------~~~------- 53 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKP--DL---------SHVF-----------SQG------- 53 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcC--cC---------cHHH-----------hCC-------
Confidence 489999999999999999987 23468999998653222110 00 0000 000
Q ss_pred CccccCHHHHHH-HHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCccc
Q 010693 165 PYGRVSRNILKT-KLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSF 229 (503)
Q Consensus 165 ~~~~v~r~~l~~-~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~v 229 (503)
.....+.. ...+.+.+.|++++ +++|++++.++.. |.+ ++.++.+|.||.|+|.....
T Consensus 54 ----~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~--v~~-~~~~~~yd~LVlATG~~~~~ 113 (377)
T PRK04965 54 ----QRADDLTRQSAGEFAEQFNLRLFPHTWVTDIDAEAQV--VKS-QGNQWQYDKLVLATGASAFV 113 (377)
T ss_pred ----CCHHHhhcCCHHHHHHhCCCEEECCCEEEEEECCCCE--EEE-CCeEEeCCEEEECCCCCCCC
Confidence 01111111 12233456799999 8999999876543 334 56689999999999987644
No 247
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.28 E-value=8.8e-06 Score=85.62 Aligned_cols=98 Identities=19% Similarity=0.216 Sum_probs=77.0
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
-+|+|||||++|+-+|..|++ .|.+|+++|+.+... +
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~-~g~~Vtli~~~~~~l------------------------------------------~ 207 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFAS-LGSKVTVIEMLDRIL------------------------------------------P 207 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHH-cCCcEEEEEcCCCCC------------------------------------------C
Confidence 579999999999999999999 999999999764210 0
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCC--cEEEeceEEecCCCCccc
Q 010693 166 YGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDG--NEIKASLIVDASGFASSF 229 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g--~~i~a~~vI~A~G~~s~v 229 (503)
+ . ...+.+.+.+.+++.|++++ +++|++++.+++.+.+.+.+| .++.+|.||.|+|..+..
T Consensus 208 ~--~-~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~ 271 (461)
T TIGR01350 208 G--E-DAEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNT 271 (461)
T ss_pred C--C-CHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccC
Confidence 0 0 02233455566777899999 899999988777777777677 479999999999987754
No 248
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.25 E-value=1.2e-05 Score=84.72 Aligned_cols=98 Identities=20% Similarity=0.223 Sum_probs=77.8
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
-.|+|||||+.|+-+|..|++ .|.+|+++|+.+....
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~-~g~~Vtli~~~~~~l~------------------------------------------ 212 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAA-LGVKVTLINTRDRLLS------------------------------------------ 212 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHH-cCCeEEEEecCCCcCC------------------------------------------
Confidence 579999999999999999999 9999999997542100
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCccc
Q 010693 166 YGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSF 229 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~v 229 (503)
..+ ..+.+.+.+.+++.|++++ +++|++++.+++.+.+.+.+|+++.+|.||.|+|..+..
T Consensus 213 --~~d-~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 274 (461)
T PRK05249 213 --FLD-DEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNT 274 (461)
T ss_pred --cCC-HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccc
Confidence 000 1134456666677899999 899999987777777888888899999999999987754
No 249
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.21 E-value=1.4e-05 Score=84.18 Aligned_cols=98 Identities=19% Similarity=0.259 Sum_probs=76.3
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
-.++|||||++|+-+|..|++ .|.+|+++|+.+.... .
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~-~g~~Vtli~~~~~~l~------------~----------------------------- 210 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYAS-LGAEVTIVEALPRILP------------G----------------------------- 210 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHH-cCCeEEEEEcCCCcCC------------c-----------------------------
Confidence 479999999999999999999 9999999997643100 0
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCC---cEEEeceEEecCCCCccc
Q 010693 166 YGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDG---NEIKASLIVDASGFASSF 229 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g---~~i~a~~vI~A~G~~s~v 229 (503)
. ...+.+.+.+.+++.|++++ +++|++++.+++.+.+.+.+| +++.+|.||.|+|..+..
T Consensus 211 ---~-~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~ 274 (462)
T PRK06416 211 ---E-DKEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNT 274 (462)
T ss_pred ---C-CHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCC
Confidence 0 01233455566677899999 899999998777777777665 579999999999987643
No 250
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.21 E-value=4.3e-06 Score=93.15 Aligned_cols=98 Identities=27% Similarity=0.335 Sum_probs=63.3
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLD 163 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (503)
...+|+||||||||+++|..|++ .|++|+|||+.+..+. .+ ..++ +.
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~-~G~~V~v~e~~~~~GG-----~l-----~~gi---------------p~------- 476 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAK-RGYDVTVFEALHEIGG-----VL-----KYGI---------------PE------- 476 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH-CCCeEEEEecCCCCCC-----ee-----eecC---------------CC-------
Confidence 46799999999999999999999 9999999997543221 10 0000 00
Q ss_pred CCccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCC
Q 010693 164 RPYGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFA 226 (503)
Q Consensus 164 ~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~ 226 (503)
+ .+... +.....+.+.+.|++++ ++.+. ..+.+++..+..+|.||.|+|.+
T Consensus 477 --~-rlp~~-~~~~~~~~l~~~gv~~~~~~~v~--------~~v~~~~l~~~~ydavvlAtGa~ 528 (752)
T PRK12778 477 --F-RLPKK-IVDVEIENLKKLGVKFETDVIVG--------KTITIEELEEEGFKGIFIASGAG 528 (752)
T ss_pred --C-CCCHH-HHHHHHHHHHHCCCEEECCCEEC--------CcCCHHHHhhcCCCEEEEeCCCC
Confidence 0 11122 23334455667899998 76541 12233333346799999999984
No 251
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.21 E-value=6.8e-06 Score=87.38 Aligned_cols=147 Identities=20% Similarity=0.278 Sum_probs=84.3
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCc-c---cch--------------h----HhhhhcC-
Q 010693 82 DRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNN-Y---GVW--------------V----DEFEDIG- 138 (503)
Q Consensus 82 ~~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~-~---g~~--------------~----~~l~~~~- 138 (503)
...++||||||||.|||.+|+.+++ .|++|+|+|+.+... ..+ + |.| . +.+...+
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~-~g~~V~l~~K~~~~r-g~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~ 80 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAE-AGLKVALLSKAPPKR-GHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDG 80 (562)
T ss_pred ccccCCEEEECCcHHHHHHHHHHHh-cCCcEEEEEccccCC-CchhhhcccccccccCcccccCCCHHHHHHHHHhccCC
Confidence 3457999999999999999999999 999999999886543 111 0 111 0 0000000
Q ss_pred c--hhhhhh-------------ccCceEEEecCCc-------cccc-CCCccc-cCHHHHHHHHHHHHHh-CCcEEE-Ee
Q 010693 139 L--VDCLDK-------------TWPMTCVFINDHK-------TKYL-DRPYGR-VSRNILKTKLLENCVS-NGVKFH-KA 192 (503)
Q Consensus 139 ~--~~~~~~-------------~~~~~~~~~~~~~-------~~~~-~~~~~~-v~r~~l~~~L~~~~~~-~gv~~~-~~ 192 (503)
+ ++.+.. .|........++. .... ...+.- -.-..+...|.+++.+ .+++++ +.
T Consensus 81 l~dqd~i~~~~~~ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~~~~~~ 160 (562)
T COG1053 81 LGDQDAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIEIFDEY 160 (562)
T ss_pred cCCHHHHHHHHHhhHHHHHHHHHhCCCcccCCCccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcchhhhhh
Confidence 0 111110 1222111111110 0000 111111 1135677788888877 677888 88
Q ss_pred EEEEEEEeCCE--EE---EEeCCCc--EEEeceEEecCCCCcccc
Q 010693 193 KVWHVNHQEFE--SS---IVCDDGN--EIKASLIVDASGFASSFV 230 (503)
Q Consensus 193 ~v~~i~~~~~~--~~---v~~~~g~--~i~a~~vI~A~G~~s~vr 230 (503)
.+.++..+++. .. ....+|+ .++++.||.|+|....+-
T Consensus 161 ~~~~l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g~~~ 205 (562)
T COG1053 161 FVLDLLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGAGRLY 205 (562)
T ss_pred hhhhheecCCCcEEEEEEEEecCCcEEEEecCcEEEccCCceEEE
Confidence 99998766442 22 2334554 588999999999777443
No 252
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.17 E-value=9.4e-06 Score=77.25 Aligned_cols=147 Identities=17% Similarity=0.203 Sum_probs=87.6
Q ss_pred CCCCcCcEEEECCCHHHHHHHHHHHc-cCCCcEEEEcCCCCCCC---CCcc-----cc--------------hhHh----
Q 010693 81 SDRIRYDVIIIGTGPAGLRLAEQVSS-RHSVKVCCVDPSPLSTW---PNNY-----GV--------------WVDE---- 133 (503)
Q Consensus 81 ~~~~~~DvvIVGgGpaGl~~A~~La~-~~G~~V~viE~~~~~~~---~~~~-----g~--------------~~~~---- 133 (503)
....+||+||||||+.|++.|.+|.- +.+++|.|+|+...... .++- |. ..+.
T Consensus 44 ~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~y 123 (453)
T KOG2665|consen 44 ISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEY 123 (453)
T ss_pred cccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHHH
Confidence 35578999999999999999999876 24999999998755421 1111 11 0000
Q ss_pred hhhc-------------------Cc-hh----hhhhccCceEEEecCCcc----------cccCCCccccCHHHHHHHHH
Q 010693 134 FEDI-------------------GL-VD----CLDKTWPMTCVFINDHKT----------KYLDRPYGRVSRNILKTKLL 179 (503)
Q Consensus 134 l~~~-------------------~~-~~----~~~~~~~~~~~~~~~~~~----------~~~~~~~~~v~r~~l~~~L~ 179 (503)
+++- .. +. -.++..++.++.-..... ....+..+-||...+...+.
T Consensus 124 c~e~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls~~ 203 (453)
T KOG2665|consen 124 CDEKKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDWGSVTLSFG 203 (453)
T ss_pred hhhcCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCcceeehHHHHHHHH
Confidence 0000 00 00 011122222221111100 00112233467777777888
Q ss_pred HHHHhCCcEEE-EeEEEEEEEeCC---E--EEEEeCCCcEEEeceEEecCCCCc
Q 010693 180 ENCVSNGVKFH-KAKVWHVNHQEF---E--SSIVCDDGNEIKASLIVDASGFAS 227 (503)
Q Consensus 180 ~~~~~~gv~~~-~~~v~~i~~~~~---~--~~v~~~~g~~i~a~~vI~A~G~~s 227 (503)
+.....|.++. +-+++++.+..+ . ++|.-..+++++++.||.|.|..|
T Consensus 204 edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~s 257 (453)
T KOG2665|consen 204 EDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQS 257 (453)
T ss_pred HHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccH
Confidence 88888899998 889999987654 1 233333467999999999999776
No 253
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.17 E-value=1.1e-05 Score=90.08 Aligned_cols=110 Identities=18% Similarity=0.230 Sum_probs=71.7
Q ss_pred CcEEEECCCHHHHHHHHHHHcc---CCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCccccc
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSR---HSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYL 162 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~---~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (503)
.+|||||+|+||+.+|..|.+. .+++|+||++.+...+.+. .+...+ ....
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~-----------~L~~~~-----------~~~~---- 57 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRV-----------HLSSYF-----------SHHT---- 57 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCC-----------cchHhH-----------cCCC----
Confidence 4799999999999999999761 3589999998765433210 111000 0000
Q ss_pred CCCccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCccccc
Q 010693 163 DRPYGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSFVE 231 (503)
Q Consensus 163 ~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~vr~ 231 (503)
...+.....+...+.|++++ +++|+.++.+. ..|.+.+|.++.+|.||.|+|....+..
T Consensus 58 --------~~~l~~~~~~~~~~~gI~~~~g~~V~~Id~~~--~~V~~~~G~~i~yD~LVIATGs~p~~p~ 117 (847)
T PRK14989 58 --------AEELSLVREGFYEKHGIKVLVGERAITINRQE--KVIHSSAGRTVFYDKLIMATGSYPWIPP 117 (847)
T ss_pred --------HHHccCCCHHHHHhCCCEEEcCCEEEEEeCCC--cEEEECCCcEEECCEEEECCCCCcCCCC
Confidence 00011111122335799999 88999988654 3566778888999999999998765443
No 254
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.15 E-value=5.3e-06 Score=87.14 Aligned_cols=97 Identities=20% Similarity=0.308 Sum_probs=63.5
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLD 163 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (503)
...+|+||||||||+++|..|++ .|++|+|+|+.+..+. .+ ..++ +
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~-~g~~V~lie~~~~~gG-----~l-----~~gi---------------p-------- 184 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLAR-KGYDVTIFEARDKAGG-----LL-----RYGI---------------P-------- 184 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHh-CCCeEEEEccCCCCCc-----Ee-----eccC---------------C--------
Confidence 45799999999999999999999 9999999998653211 00 0000 0
Q ss_pred CCccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCC
Q 010693 164 RPYGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFA 226 (503)
Q Consensus 164 ~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~ 226 (503)
.+ ... ..+...+.+.+.+.|++++ ++.+.. .+.+++. .+.+|.||.|+|.+
T Consensus 185 -~~-~~~-~~~~~~~~~~l~~~gv~~~~~~~v~~--------~v~~~~~-~~~~d~vvlAtGa~ 236 (457)
T PRK11749 185 -EF-RLP-KDIVDREVERLLKLGVEIRTNTEVGR--------DITLDEL-RAGYDAVFIGTGAG 236 (457)
T ss_pred -Cc-cCC-HHHHHHHHHHHHHcCCEEEeCCEECC--------ccCHHHH-HhhCCEEEEccCCC
Confidence 00 011 2344455566667899998 666521 1222222 37899999999985
No 255
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.14 E-value=5.7e-06 Score=94.17 Aligned_cols=36 Identities=31% Similarity=0.380 Sum_probs=32.7
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPL 120 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~ 120 (503)
...+|+|||||||||++|..|++ .|++|+|||+.+.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~-~G~~VtV~E~~~~ 464 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVK-YGVDVTVYEALHV 464 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-cCCcEEEEecCCC
Confidence 35799999999999999999999 9999999997643
No 256
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.14 E-value=1.6e-05 Score=88.80 Aligned_cols=108 Identities=17% Similarity=0.292 Sum_probs=70.1
Q ss_pred EEEECCCHHHHHHHHHHHc--cCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCC
Q 010693 88 VIIIGTGPAGLRLAEQVSS--RHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 88 vvIVGgGpaGl~~A~~La~--~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
|||||||+||+.+|..|.+ ..+++|+|||+.+...+.+. .+...+ .+..
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~-----------~L~~~l-----------~g~~------- 51 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRI-----------LLSSVL-----------QGEA------- 51 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccc-----------cccHHH-----------CCCC-------
Confidence 6899999999999999877 13579999998765432111 000000 0000
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCcccc
Q 010693 166 YGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSFV 230 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~vr 230 (503)
+...+.....+...+.|++++ +++|+.++.++. .|++.+|.++.+|.||.|+|......
T Consensus 52 ----~~~~l~~~~~~~~~~~gv~~~~g~~V~~Id~~~k--~V~~~~g~~~~yD~LVlATGs~p~~p 111 (785)
T TIGR02374 52 ----DLDDITLNSKDWYEKHGITLYTGETVIQIDTDQK--QVITDAGRTLSYDKLILATGSYPFIL 111 (785)
T ss_pred ----CHHHccCCCHHHHHHCCCEEEcCCeEEEEECCCC--EEEECCCcEeeCCEEEECCCCCcCCC
Confidence 000011111122345799999 889999987653 56677888999999999999876543
No 257
>PRK06116 glutathione reductase; Validated
Probab=98.13 E-value=2.7e-05 Score=81.61 Aligned_cols=98 Identities=14% Similarity=0.212 Sum_probs=76.6
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
-.|+|||||+.|+-+|..|++ .|.+|+++++.+... ...
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~~~l------------~~~---------------------------- 206 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNG-LGSETHLFVRGDAPL------------RGF---------------------------- 206 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHH-cCCeEEEEecCCCCc------------ccc----------------------------
Confidence 479999999999999999999 999999999754210 000
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCE-EEEEeCCCcEEEeceEEecCCCCccc
Q 010693 166 YGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFE-SSIVCDDGNEIKASLIVDASGFASSF 229 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~-~~v~~~~g~~i~a~~vI~A~G~~s~v 229 (503)
...+.+.+.+.+++.|++++ +++|.+++.++++ +.+.+.+|+++.+|.||.|+|..+..
T Consensus 207 -----~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~ 267 (450)
T PRK06116 207 -----DPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNT 267 (450)
T ss_pred -----CHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCC
Confidence 01233555666778899999 9999999876544 77888888899999999999987643
No 258
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.12 E-value=7.9e-06 Score=85.49 Aligned_cols=37 Identities=27% Similarity=0.415 Sum_probs=33.4
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCC
Q 010693 83 RIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPL 120 (503)
Q Consensus 83 ~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~ 120 (503)
...++|+||||||||+++|..|++ .|++|+|||+.+.
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~-~G~~V~vie~~~~ 167 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAK-AGHSVTVFEALHK 167 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence 346899999999999999999999 9999999998653
No 259
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=98.12 E-value=0.00014 Score=73.52 Aligned_cols=38 Identities=26% Similarity=0.366 Sum_probs=32.6
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCC-CcEEEEcCCCCCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHS-VKVCCVDPSPLST 122 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G-~~V~viE~~~~~~ 122 (503)
....|+|||||.|||+||..|-+ .| .+|+|+|...+.+
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle-~gf~~~~IlEa~dRIG 58 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLE-NGFIDVLILEASDRIG 58 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHH-hCCceEEEEEeccccC
Confidence 34589999999999999999997 55 5899999887764
No 260
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.11 E-value=0.00034 Score=74.66 Aligned_cols=202 Identities=17% Similarity=0.201 Sum_probs=112.7
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEE-EEeC---CC--cEEEeceEEecCCCCcc-cccccCCCCC
Q 010693 167 GRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESS-IVCD---DG--NEIKASLIVDASGFASS-FVEYDKPRNH 238 (503)
Q Consensus 167 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~-v~~~---~g--~~i~a~~vI~A~G~~s~-vr~~~~~~~~ 238 (503)
+.++...+...+.+.+.++|++++ +++|+++..+++.+. |++. +| .++.|+.||.|+|.++. +.+..+. ..
T Consensus 123 g~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~g~-~~ 201 (516)
T TIGR03377 123 GTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAGL-DI 201 (516)
T ss_pred cEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhcCC-CC
Confidence 457889999999999999999999 999999998777542 4432 34 36999999999998864 4433333 22
Q ss_pred ccceeEEEEEEecCCCCCCCceEEeeccCCCCCCCcccccCCCCCCeEEEEeecCCCeEEEecccccC----CCCCCHHH
Q 010693 239 GYQIAHGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNLVFLEETSLVS----RPVLSYKE 314 (503)
Q Consensus 239 ~~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~~v~~~~~~~----~~~~~~~~ 314 (503)
......|....++.. ... .++.... . ..+| .+++|. ++..+++.+.... ....+.++
T Consensus 202 ~i~p~kG~~lv~~~~-~~~--~~~~~~~--~-------~~~g------~~~~P~-~~~~liGtT~~~~~~~~~~~~~~~~ 262 (516)
T TIGR03377 202 RMFPAKGALLIMNHR-INN--TVINRCR--K-------PSDA------DILVPG-DTISIIGTTSERIDDPDDLPVTQEE 262 (516)
T ss_pred ceecceEEEEEECCc-ccc--ccccccc--C-------CCCC------cEEEEC-CCeEEEecCCCCCCCCCCCCCCHHH
Confidence 333445665554321 111 1110000 0 0122 236786 4566676654421 11233333
Q ss_pred H---HHHHHHHHhhcCCccceEeecceecccCCCCCC-----CCCCCEEEecc-----CCCCcCCcccHHHHHHHHhHHH
Q 010693 315 V---KRRMAARLRHMGIRVKRVIEDEKCLIPMGGPLP-----VIPQSVMAIGS-----TSGLVHPSTGYMVARTMALAPA 381 (503)
Q Consensus 315 ~---~~~l~~~l~~~~~~~~~i~~~~~~~~p~~~~~~-----~~~~~v~liGD-----Aa~~~~P~~G~G~~~al~~a~~ 381 (503)
+ .+...++++. +....++....++.|+..... ......+++++ ..++++-.+| .+..+-.-|..
T Consensus 263 v~~ll~~~~~~~P~--l~~~~i~~~~aGvRPl~~~~~~~~~~~~sR~~~i~~~~~~~~~~g~i~i~GG-kltt~r~~Ae~ 339 (516)
T TIGR03377 263 VDVLLREGAKLAPM--LAQTRILRAFAGVRPLVAVDDDPSGRNISRGIVLLDHAERDGLPGFITITGG-KLTTYRLMAEW 339 (516)
T ss_pred HHHHHHHHHHhCcc--cccCCEEEEEeecccccCCCCCCCccccCCCeEEeecccccCCCCeEEEecc-hHHHHHHHHHH
Confidence 3 3333344432 344556777778888542211 11223444553 2345554444 47766666777
Q ss_pred HHHHHHHHhc
Q 010693 382 LADAIAECLG 391 (503)
Q Consensus 382 lA~~l~~~l~ 391 (503)
+++.+.+.+.
T Consensus 340 ~~d~~~~~l~ 349 (516)
T TIGR03377 340 ATDVVCKKLG 349 (516)
T ss_pred HHHHHHHHcC
Confidence 7777776653
No 261
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.11 E-value=3.5e-05 Score=81.12 Aligned_cols=98 Identities=18% Similarity=0.184 Sum_probs=76.9
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
-.++|||+|..|+-+|..|++ .|.+|+++|+.+.... .
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~-~g~~Vtli~~~~~~l~------------~----------------------------- 215 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTE-LGVKVTLVSSRDRVLP------------G----------------------------- 215 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHH-cCCeEEEEEcCCcCCC------------C-----------------------------
Confidence 479999999999999999999 9999999997542100 0
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCccc
Q 010693 166 YGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSF 229 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~v 229 (503)
.+ ..+...+.+.+++.|++++ +++|++++.+++++.+.+.+|+++.+|.||.|.|..+..
T Consensus 216 ---~d-~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~ 276 (466)
T PRK07845 216 ---ED-ADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNT 276 (466)
T ss_pred ---CC-HHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCC
Confidence 00 1123445566667899999 999999987777777888888899999999999987654
No 262
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.11 E-value=3.5e-05 Score=80.70 Aligned_cols=97 Identities=18% Similarity=0.289 Sum_probs=75.6
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
-.++|||||+.|+-+|..|++ .|.+|+++|+.+... .
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~-~G~~Vtli~~~~~~l--------------------------------~---------- 203 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRG-LGVQVTLIYRGELIL--------------------------------R---------- 203 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHH-cCCeEEEEEeCCCCC--------------------------------c----------
Confidence 369999999999999999999 999999999754210 0
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCcc
Q 010693 166 YGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASS 228 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~ 228 (503)
..+ ..+.+.+.+.+.+.|++++ +++|++++.+++.+.+.+.+|+++.+|.||.|+|..+.
T Consensus 204 --~~d-~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn 264 (446)
T TIGR01424 204 --GFD-DDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPN 264 (446)
T ss_pred --ccC-HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcC
Confidence 000 1233445566667899999 89999998776677777778889999999999998664
No 263
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.11 E-value=3.3e-05 Score=80.75 Aligned_cols=97 Identities=18% Similarity=0.194 Sum_probs=73.7
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
-.|+|||||++|+-+|..|++ .|.+|+++|+.+... +.
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~-~g~~Vtli~~~~~~l--------------------------------~~--------- 195 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNK-LGSKVTVLDAASTIL--------------------------------PR--------- 195 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHH-cCCeEEEEecCCccC--------------------------------CC---------
Confidence 379999999999999999999 999999999764210 00
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCccc
Q 010693 166 YGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSF 229 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~v 229 (503)
. ...+.+.+.+.+++.|++++ +++|++++.+++.+.+.. +|+++.+|.||.|+|..+..
T Consensus 196 ---~-~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~-~g~~i~~D~viva~G~~p~~ 255 (438)
T PRK07251 196 ---E-EPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVT-EDETYRFDALLYATGRKPNT 255 (438)
T ss_pred ---C-CHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEE-CCeEEEcCEEEEeeCCCCCc
Confidence 0 01123345556677899999 899999987666665554 56789999999999987753
No 264
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.09 E-value=1.2e-05 Score=78.42 Aligned_cols=128 Identities=20% Similarity=0.218 Sum_probs=72.1
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCC-CCcccchhH--hhhhcCchhhhhhc-cCceEEEecCCcc
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTW-PNNYGVWVD--EFEDIGLVDCLDKT-WPMTCVFINDHKT 159 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~-~~~~g~~~~--~l~~~~~~~~~~~~-~~~~~~~~~~~~~ 159 (503)
.+|||+|||+||.|-.+|+..++ .|++.+++|++...+. .-+.|+... .|....+...+++. .....+
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQ-lGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi------- 109 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQ-LGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGI------- 109 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHH-hcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCc-------
Confidence 57999999999999999999999 9999999998654332 122233211 12222221111110 000000
Q ss_pred cccCCCccccCHHHH-----------HHHHHHHHHhCCcEEE-E-eEEEEEEEeCCEEEEEeCCCc--EEEeceEEecCC
Q 010693 160 KYLDRPYGRVSRNIL-----------KTKLLENCVSNGVKFH-K-AKVWHVNHQEFESSIVCDDGN--EIKASLIVDASG 224 (503)
Q Consensus 160 ~~~~~~~~~v~r~~l-----------~~~L~~~~~~~gv~~~-~-~~v~~i~~~~~~~~v~~~~g~--~i~a~~vI~A~G 224 (503)
.. .-..+|+..+ ...+.....+++|++. + ..+. +...+.+.-.||+ .+.++.+|.|+|
T Consensus 110 -~v--s~~~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~----~p~~V~v~k~dg~~~ii~aKnIiiATG 182 (506)
T KOG1335|consen 110 -DV--SSVSLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFL----DPNKVSVKKIDGEDQIIKAKNIIIATG 182 (506)
T ss_pred -cc--cceecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeec----CCceEEEeccCCCceEEeeeeEEEEeC
Confidence 00 0011333333 3333333445566665 2 2332 2446777777775 699999999999
Q ss_pred CC
Q 010693 225 FA 226 (503)
Q Consensus 225 ~~ 226 (503)
.-
T Consensus 183 Se 184 (506)
T KOG1335|consen 183 SE 184 (506)
T ss_pred Cc
Confidence 63
No 265
>PLN02507 glutathione reductase
Probab=98.06 E-value=4.8e-05 Score=80.64 Aligned_cols=98 Identities=16% Similarity=0.258 Sum_probs=76.8
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
-+|+|||||+.|+-+|..|++ .|.+|+|+++.+... .
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~-~G~~Vtli~~~~~~l------------~------------------------------ 240 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRG-MGATVDLFFRKELPL------------R------------------------------ 240 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHH-cCCeEEEEEecCCcC------------c------------------------------
Confidence 479999999999999999999 999999999754210 0
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCccc
Q 010693 166 YGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSF 229 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~v 229 (503)
..+ ..+.+.+.+.+++.|++++ +++|++++.+++++.+.+.+|+++.+|.||.|.|..+..
T Consensus 241 --~~d-~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~ 302 (499)
T PLN02507 241 --GFD-DEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNT 302 (499)
T ss_pred --ccC-HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCC
Confidence 001 1233445555667899999 999999987777777888888899999999999987754
No 266
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.05 E-value=5.4e-05 Score=76.94 Aligned_cols=144 Identities=17% Similarity=0.181 Sum_probs=82.7
Q ss_pred cCcEEEECCCHHHHHHHHHHHc-cCC-CcEEEEcCCCCCCCCCcccchhH----hhhhcCc----hhhhh--hccCceEE
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSS-RHS-VKVCCVDPSPLSTWPNNYGVWVD----EFEDIGL----VDCLD--KTWPMTCV 152 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~-~~G-~~V~viE~~~~~~~~~~~g~~~~----~l~~~~~----~~~~~--~~~~~~~~ 152 (503)
+++|+|||||++|+.+|..|.+ .+. ..|.|+|+.+..+..-.|..-.. .+.+..+ .+.-+ ..|-....
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~ 80 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQL 80 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhcc
Confidence 4789999999999999999988 122 23999999887655444433111 0111111 00000 11211110
Q ss_pred E-ecCCcccccCCCccccCHHHHHHHHHHHHHh---C---C-cEEEEeEEEEEEEe--CCEEEEEeCCCcEEEeceEEec
Q 010693 153 F-INDHKTKYLDRPYGRVSRNILKTKLLENCVS---N---G-VKFHKAKVWHVNHQ--EFESSIVCDDGNEIKASLIVDA 222 (503)
Q Consensus 153 ~-~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~---~---g-v~~~~~~v~~i~~~--~~~~~v~~~~g~~i~a~~vI~A 222 (503)
. ..+... .....-.+..|..|-.+|.++... . . +.++.++++++..+ ..+..+...+|.+..||.+|.|
T Consensus 81 ~~~~d~~~-~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vla 159 (474)
T COG4529 81 QRYRDPED-INHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIVLA 159 (474)
T ss_pred cccCChhh-cCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCCeeeeeEEEEe
Confidence 0 000100 111122235566665655554321 1 2 34447888888877 5577888899999999999999
Q ss_pred CCCCccc
Q 010693 223 SGFASSF 229 (503)
Q Consensus 223 ~G~~s~v 229 (503)
+|+....
T Consensus 160 tgh~~~~ 166 (474)
T COG4529 160 TGHSAPP 166 (474)
T ss_pred ccCCCCC
Confidence 9987644
No 267
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.04 E-value=1.3e-05 Score=83.73 Aligned_cols=37 Identities=24% Similarity=0.490 Sum_probs=31.8
Q ss_pred CcCcEEEECCCHHHHHHHHHHHc-cCCCcEEEEcCCCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSS-RHSVKVCCVDPSPL 120 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~-~~G~~V~viE~~~~ 120 (503)
...+|+||||||||+++|..|++ ..|++|+|||+.+.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~ 62 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPT 62 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCC
Confidence 35689999999999999999975 25999999998764
No 268
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.03 E-value=5e-05 Score=80.13 Aligned_cols=98 Identities=18% Similarity=0.209 Sum_probs=72.4
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
-.|+|||||++|+-+|..|++ .|.+|+++|+.+... +.
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~-~g~~Vtli~~~~~il--------------------------------~~--------- 218 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLAD-FGVEVTVVEAADRIL--------------------------------PT--------- 218 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHH-cCCeEEEEEecCccC--------------------------------Cc---------
Confidence 479999999999999999999 999999999764210 00
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEE--eCCEEEEEeCCCc--EEEeceEEecCCCCccc
Q 010693 166 YGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNH--QEFESSIVCDDGN--EIKASLIVDASGFASSF 229 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~--~~~~~~v~~~~g~--~i~a~~vI~A~G~~s~v 229 (503)
. ...+.+.+.+.+++.|++++ +++|++++. +++...+.+.+|+ ++.+|.||.|+|.....
T Consensus 219 ---~-~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 283 (472)
T PRK05976 219 ---E-DAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNT 283 (472)
T ss_pred ---C-CHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCC
Confidence 0 12233455566677899999 999999975 3333334445663 69999999999987654
No 269
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.03 E-value=5.5e-05 Score=79.22 Aligned_cols=98 Identities=17% Similarity=0.183 Sum_probs=74.9
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
-.|+|||||..|+-+|..|++ .|.+|+++|+.+.... .
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~-~g~~Vtli~~~~~il~-----------------------------------------~ 204 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHG-LGSETHLVIRHERVLR-----------------------------------------S 204 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHH-cCCcEEEEecCCCCCc-----------------------------------------c
Confidence 479999999999999999999 9999999997542100 0
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCC-EEEEEeCCC-cEEEeceEEecCCCCccc
Q 010693 166 YGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEF-ESSIVCDDG-NEIKASLIVDASGFASSF 229 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~-~~~v~~~~g-~~i~a~~vI~A~G~~s~v 229 (503)
.+ ..+.+.+.+.+++.|++++ +++|+++..+++ .+.+.+++| .++.+|.||.|.|..+..
T Consensus 205 ---~d-~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~ 267 (450)
T TIGR01421 205 ---FD-SMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNT 267 (450)
T ss_pred ---cC-HHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCc
Confidence 00 1134555566667899999 999999987544 366777777 579999999999987653
No 270
>PRK06370 mercuric reductase; Validated
Probab=98.03 E-value=6.2e-05 Score=79.25 Aligned_cols=98 Identities=19% Similarity=0.230 Sum_probs=73.2
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
-+|+|||||+.|+-+|..|++ .|.+|+++|+.+... ..
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~-~G~~Vtli~~~~~~l--------------------------------~~--------- 209 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRR-FGSEVTVIERGPRLL--------------------------------PR--------- 209 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHH-cCCeEEEEEcCCCCC--------------------------------cc---------
Confidence 479999999999999999999 999999999754210 00
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEe--CC-CcEEEeceEEecCCCCccc
Q 010693 166 YGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVC--DD-GNEIKASLIVDASGFASSF 229 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~--~~-g~~i~a~~vI~A~G~~s~v 229 (503)
. ...+.+.+.+.+++.|++++ +++|.+++.+++.+.+.+ .+ +.++.+|.||.|+|..+..
T Consensus 210 ---~-~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~ 273 (463)
T PRK06370 210 ---E-DEDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNT 273 (463)
T ss_pred ---c-CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCC
Confidence 0 01123455566677899999 899999987766555443 23 4579999999999987654
No 271
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.02 E-value=5.1e-05 Score=79.01 Aligned_cols=96 Identities=19% Similarity=0.273 Sum_probs=73.0
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
-.|+|||||++|+-+|..|++ .|.+|+++++.+.... ..
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~-~g~~Vtli~~~~~~~~----------------------------------------~~ 176 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRE-RGKNVTLIHRSERILN----------------------------------------KL 176 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHh-CCCcEEEEECCcccCc----------------------------------------cc
Confidence 479999999999999999999 9999999997542100 00
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCcc
Q 010693 166 YGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASS 228 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~ 228 (503)
.+ ..+.+.+.+.+++.|++++ +++|.+++.++. + +.+.+|+++.+|.||.|+|....
T Consensus 177 ---~~-~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~-~-v~~~~g~~i~~D~vi~a~G~~p~ 234 (427)
T TIGR03385 177 ---FD-EEMNQIVEEELKKHEINLRLNEEVDSIEGEER-V-KVFTSGGVYQADMVILATGIKPN 234 (427)
T ss_pred ---cC-HHHHHHHHHHHHHcCCEEEeCCEEEEEecCCC-E-EEEcCCCEEEeCEEEECCCccCC
Confidence 01 2234556666777899999 899999976543 3 55677889999999999998653
No 272
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.02 E-value=6.8e-05 Score=77.65 Aligned_cols=99 Identities=22% Similarity=0.262 Sum_probs=79.1
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
-.++|||||+.|+=.|..+++ .|.+|+|+|+.+.... .
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~-LG~~VTiie~~~~iLp--------------------------------~--------- 211 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAA-LGSKVTVVERGDRILP--------------------------------G--------- 211 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHH-cCCcEEEEecCCCCCC--------------------------------c---------
Confidence 459999999999999999999 9999999997652110 0
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCc--EEEeceEEecCCCCcccc
Q 010693 166 YGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGN--EIKASLIVDASGFASSFV 230 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~--~i~a~~vI~A~G~~s~vr 230 (503)
.-+.+.+.+.+.+++.|++++ +++++.++..++++.+.+++|+ ++++|.|+.|.|+....-
T Consensus 212 ----~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~ 275 (454)
T COG1249 212 ----EDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTD 275 (454)
T ss_pred ----CCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCC
Confidence 012345666666667789999 9999999988777888888876 799999999999987654
No 273
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.02 E-value=5.7e-06 Score=86.72 Aligned_cols=42 Identities=26% Similarity=0.334 Sum_probs=37.5
Q ss_pred CCCCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCC
Q 010693 81 SDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTW 123 (503)
Q Consensus 81 ~~~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~ 123 (503)
......+|||||||+|||+||..|.+ .|++|+|+|.+...+.
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~-~G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQD-FGFDVLVLEARDRVGG 52 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHH-cCCceEEEeccCCcCc
Confidence 45567899999999999999999999 9999999998877653
No 274
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.02 E-value=6.1e-05 Score=79.33 Aligned_cols=98 Identities=21% Similarity=0.337 Sum_probs=73.8
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
-.|+|||||+.|+-+|..|++ .|.+|+|+|+.+... +.
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~-~G~~Vtlv~~~~~~l--------------------------------~~--------- 210 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKN-YGVDVTIVEFLDRAL--------------------------------PN--------- 210 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHH-cCCeEEEEecCCCcC--------------------------------Cc---------
Confidence 479999999999999999999 999999999643210 00
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeC--CCc--EEEeceEEecCCCCccc
Q 010693 166 YGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCD--DGN--EIKASLIVDASGFASSF 229 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~--~g~--~i~a~~vI~A~G~~s~v 229 (503)
.+ ..+...+.+.+++.|++++ +++|++++.+++.+.+.+. +|+ ++.+|.||.|.|..+..
T Consensus 211 ---~d-~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~ 275 (466)
T PRK07818 211 ---ED-AEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRV 275 (466)
T ss_pred ---cC-HHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCC
Confidence 00 1133445566677899999 9999999877666655553 563 69999999999987654
No 275
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.02 E-value=1.1e-05 Score=85.00 Aligned_cols=37 Identities=32% Similarity=0.524 Sum_probs=33.4
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCC
Q 010693 83 RIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPL 120 (503)
Q Consensus 83 ~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~ 120 (503)
....+|+||||||||+++|..|++ .|++|+|||+.+.
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~-~G~~V~vie~~~~ 177 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLAR-AGHKVTVFERADR 177 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHh-CCCcEEEEecCCC
Confidence 345799999999999999999999 9999999998654
No 276
>PRK07846 mycothione reductase; Reviewed
Probab=98.01 E-value=5.1e-05 Score=79.50 Aligned_cols=97 Identities=20% Similarity=0.238 Sum_probs=73.0
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
-+++|||||+.|+-+|..|++ .|.+|+++|+.+... ..
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~-~G~~Vtli~~~~~ll------------~~----------------------------- 204 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSA-LGVRVTVVNRSGRLL------------RH----------------------------- 204 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHH-cCCeEEEEEcCCccc------------cc-----------------------------
Confidence 579999999999999999999 999999999754210 00
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCccc
Q 010693 166 YGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSF 229 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~v 229 (503)
.+. .+.+.+.+. .+.|++++ +++|++++.+++.+.+.+.+|+++.+|.||.|+|..+..
T Consensus 205 ---~d~-~~~~~l~~l-~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~ 264 (451)
T PRK07846 205 ---LDD-DISERFTEL-ASKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNG 264 (451)
T ss_pred ---cCH-HHHHHHHHH-HhcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCc
Confidence 000 112222222 24679999 999999987776777888888899999999999987643
No 277
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.01 E-value=6.3e-05 Score=79.19 Aligned_cols=98 Identities=18% Similarity=0.196 Sum_probs=73.2
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
-+++|||||++|+-+|..|++ .|.+|+++|+.+.... .
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~-~g~~Vtli~~~~~~l~--------------------------------~--------- 204 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFAR-LGSEVTILQRSDRLLP--------------------------------R--------- 204 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHH-cCCcEEEEEcCCcCCC--------------------------------c---------
Confidence 579999999999999999999 9999999997542100 0
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeC---CCcEEEeceEEecCCCCccc
Q 010693 166 YGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCD---DGNEIKASLIVDASGFASSF 229 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~---~g~~i~a~~vI~A~G~~s~v 229 (503)
.+ ..+...+.+.+++.|++++ +++|++++.+++...+.+. +++++.+|.||.|+|..+..
T Consensus 205 ---~d-~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~ 268 (463)
T TIGR02053 205 ---EE-PEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNT 268 (463)
T ss_pred ---cC-HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCC
Confidence 00 1123445556667899999 8999999877665555543 23579999999999987654
No 278
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.01 E-value=7.1e-05 Score=78.65 Aligned_cols=98 Identities=20% Similarity=0.253 Sum_probs=72.9
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
-+++|||||++|+-+|..|++ .|.+|+++|+.+... +.
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~-~g~~Vtli~~~~~ll--------------------------------~~--------- 208 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSR-LGTKVTIVEMAPQLL--------------------------------PG--------- 208 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHH-cCCeEEEEecCCCcC--------------------------------cc---------
Confidence 479999999999999999999 999999999754210 00
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCC-cEEEeceEEecCCCCccc
Q 010693 166 YGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDG-NEIKASLIVDASGFASSF 229 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g-~~i~a~~vI~A~G~~s~v 229 (503)
. ...+.+.+.+.+++.|++++ +++|++++.++..+.+..+++ .++.+|.||.|+|..+..
T Consensus 209 ---~-d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~ 270 (458)
T PRK06912 209 ---E-DEDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRV 270 (458)
T ss_pred ---c-cHHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCC
Confidence 0 01234455666677899999 899999987666555543322 369999999999987754
No 279
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.99 E-value=7.4e-05 Score=78.89 Aligned_cols=98 Identities=15% Similarity=0.242 Sum_probs=74.7
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
-.|+|||||+.|+-+|..|++ .|.+|+|+|+.+....
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~-~g~~Vtli~~~~~~l~------------------------------------------ 220 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRR-LGAEVTILEALPAFLA------------------------------------------ 220 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHH-cCCeEEEEeCCCccCC------------------------------------------
Confidence 479999999999999999999 9999999997542100
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCC--C--cEEEeceEEecCCCCccc
Q 010693 166 YGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDD--G--NEIKASLIVDASGFASSF 229 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~--g--~~i~a~~vI~A~G~~s~v 229 (503)
..+ ..+.+.+.+.+++.|++++ +++|++++.+++.+.+.+.+ | +++.+|.||.|.|..+..
T Consensus 221 --~~d-~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~ 286 (475)
T PRK06327 221 --AAD-EQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNT 286 (475)
T ss_pred --cCC-HHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCC
Confidence 001 2234455556667899999 89999998877777676544 3 469999999999987754
No 280
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.99 E-value=1.4e-05 Score=83.92 Aligned_cols=99 Identities=24% Similarity=0.342 Sum_probs=64.9
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLD 163 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (503)
...+|+||||||+|+++|..|++ .|++|+|+|+.+..+. .+ ..++ +
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~-~G~~V~i~e~~~~~gG-----~l-----~~gi---------------p-------- 185 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILAR-AGVQVVVFDRHPEIGG-----LL-----TFGI---------------P-------- 185 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH-cCCeEEEEecCCCCCc-----ee-----eecC---------------c--------
Confidence 45799999999999999999999 9999999998653221 00 0000 0
Q ss_pred CCccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCcc
Q 010693 164 RPYGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASS 228 (503)
Q Consensus 164 ~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~ 228 (503)
.+ ...+ .+.....+.+.+.|++++ +++|..- +...+ ....+|.||.|+|....
T Consensus 186 -~~-~~~~-~~~~~~~~~~~~~Gv~~~~~~~v~~~--------~~~~~-~~~~~D~vilAtGa~~~ 239 (467)
T TIGR01318 186 -SF-KLDK-AVLSRRREIFTAMGIEFHLNCEVGRD--------ISLDD-LLEDYDAVFLGVGTYRS 239 (467)
T ss_pred -cc-cCCH-HHHHHHHHHHHHCCCEEECCCEeCCc--------cCHHH-HHhcCCEEEEEeCCCCC
Confidence 00 1222 233445566778899998 8776321 11111 12468999999998764
No 281
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.96 E-value=9.1e-05 Score=77.97 Aligned_cols=98 Identities=18% Similarity=0.199 Sum_probs=72.9
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
-.|+|||||+.|+-+|..|++ .|.+|+++|+.+... + .
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~-~G~~Vtlie~~~~il--------------------------------~---------~ 212 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRR-LGAQVTVVEYLDRIC--------------------------------P---------G 212 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHH-cCCeEEEEeCCCCCC--------------------------------C---------C
Confidence 479999999999999999999 999999999754210 0 0
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeC---C--CcEEEeceEEecCCCCccc
Q 010693 166 YGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCD---D--GNEIKASLIVDASGFASSF 229 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~---~--g~~i~a~~vI~A~G~~s~v 229 (503)
.+ ..+.+.+.+.+++.|++++ +++|++++.+++.+.+.+. + ++++.+|.||.|.|..+..
T Consensus 213 ---~d-~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~ 278 (466)
T PRK06115 213 ---TD-TETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYT 278 (466)
T ss_pred ---CC-HHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCcccc
Confidence 01 1133455566677899999 9999999876666655442 2 3479999999999987643
No 282
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.96 E-value=3.4e-05 Score=85.40 Aligned_cols=37 Identities=24% Similarity=0.509 Sum_probs=33.2
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCC
Q 010693 83 RIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPL 120 (503)
Q Consensus 83 ~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~ 120 (503)
.....|+||||||||+++|+.|++ .|++|+|+|+.+.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~-~Gh~Vtv~E~~~i 417 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLR-SGHNVTAIDGLKI 417 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHh-CCCeEEEEccccc
Confidence 345789999999999999999999 9999999997643
No 283
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.95 E-value=4.2e-05 Score=77.41 Aligned_cols=109 Identities=19% Similarity=0.323 Sum_probs=73.5
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCC--CcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccc
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHS--VKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKY 161 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G--~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (503)
.+..|||||||-+|+.+|..|++ +- .+|++|||++.. .|.+.+.+.
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~-~~~~~~itLVd~~~~h-------l~~plL~ev------------------------ 49 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLAR-KLPDVEITLVDRRDYH-------LFTPLLYEV------------------------ 49 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhh-cCCCCcEEEEeCCCcc-------ccchhhhhh------------------------
Confidence 35679999999999999999999 64 899999986432 111111110
Q ss_pred cCCCccccCHHHHHHHHHHHHHhC-CcEEEEeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCccc
Q 010693 162 LDRPYGRVSRNILKTKLLENCVSN-GVKFHKAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSF 229 (503)
Q Consensus 162 ~~~~~~~v~r~~l~~~L~~~~~~~-gv~~~~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~v 229 (503)
..+.++...+..-+.+.+... ++++...+|++|+.++.. |.++++.++..|++|.|.|.....
T Consensus 50 ---a~g~l~~~~i~~p~~~~~~~~~~v~~~~~~V~~ID~~~k~--V~~~~~~~i~YD~LVvalGs~~~~ 113 (405)
T COG1252 50 ---ATGTLSESEIAIPLRALLRKSGNVQFVQGEVTDIDRDAKK--VTLADLGEISYDYLVVALGSETNY 113 (405)
T ss_pred ---hcCCCChhheeccHHHHhcccCceEEEEEEEEEEcccCCE--EEeCCCccccccEEEEecCCcCCc
Confidence 001122222223333334433 488889999999998775 455566789999999999987754
No 284
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.93 E-value=7.5e-05 Score=83.43 Aligned_cols=98 Identities=20% Similarity=0.279 Sum_probs=74.9
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
-.++|||||+.|+-+|..|++ .|.+|+|+|+.+... .. .
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~-~G~~Vtvv~~~~~ll------------~~------------------------~---- 179 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQN-LGMDVSVIHHAPGLM------------AK------------------------Q---- 179 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHh-cCCeEEEEccCCchh------------hh------------------------h----
Confidence 369999999999999999999 999999999654210 00 0
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCcc
Q 010693 166 YGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASS 228 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~ 228 (503)
++ ....+.+.+.+++.|++++ ++.++++..++....|.+.||+++.+|+||.|.|....
T Consensus 180 ---ld-~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn 239 (785)
T TIGR02374 180 ---LD-QTAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPN 239 (785)
T ss_pred ---cC-HHHHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcC
Confidence 00 1123445566677899999 88999987665556788889999999999999997653
No 285
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.91 E-value=1.2e-05 Score=81.45 Aligned_cols=37 Identities=27% Similarity=0.434 Sum_probs=33.3
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCC
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLST 122 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~ 122 (503)
++||+|||||+||+++|..|++ .|.+|+|||+++..+
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~-~G~~V~viEk~~~iG 37 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQ-LNKRVLVVEKRNHIG 37 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHh-CCCeEEEEecCCCCC
Confidence 3799999999999999999999 999999999875543
No 286
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.00022 Score=68.69 Aligned_cols=136 Identities=21% Similarity=0.340 Sum_probs=82.0
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccc---------hhH-hhhhcCc-----hhhhhhcc
Q 010693 83 RIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGV---------WVD-EFEDIGL-----VDCLDKTW 147 (503)
Q Consensus 83 ~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~---------~~~-~l~~~~~-----~~~~~~~~ 147 (503)
.-+||.+|||||-+||+||-..+. .|.+|.++|--.+......||. ... .+.+..+ .+...+.|
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~-~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW 95 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAAD-LGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGW 95 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHh-cCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCC
Confidence 347999999999999999999999 9999999996544444445543 111 1111111 22223334
Q ss_pred CceEEEecCCcccccCCCccccCHHHHHHHHHHHHHhCC----cEEEEeEEEEEEEe-----CCEEEEEeCCCc--EEEe
Q 010693 148 PMTCVFINDHKTKYLDRPYGRVSRNILKTKLLENCVSNG----VKFHKAKVWHVNHQ-----EFESSIVCDDGN--EIKA 216 (503)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~g----v~~~~~~v~~i~~~-----~~~~~v~~~~g~--~i~a 216 (503)
.. ++. .+ .-+...+.+...+++.+.+ +.+++.+|.-+..- ...+..+-.+|+ .+.|
T Consensus 96 ~~-----~e~---~i-----khdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta 162 (503)
T KOG4716|consen 96 NV-----DEQ---KI-----KHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTA 162 (503)
T ss_pred CC-----ccc---cc-----cccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeec
Confidence 32 111 11 1234667778888887754 23334455544322 123444445553 5899
Q ss_pred ceEEecCCCCcccccc
Q 010693 217 SLIVDASGFASSFVEY 232 (503)
Q Consensus 217 ~~vI~A~G~~s~vr~~ 232 (503)
+.+|.|+|-+.+....
T Consensus 163 ~~fvIatG~RPrYp~I 178 (503)
T KOG4716|consen 163 ENFVIATGLRPRYPDI 178 (503)
T ss_pred ceEEEEecCCCCCCCC
Confidence 9999999988865543
No 287
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.90 E-value=0.00011 Score=76.74 Aligned_cols=93 Identities=11% Similarity=0.206 Sum_probs=71.3
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
-.++|||||+.|+-+|..|++ .|.+|+++|+.+.... .
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~-~g~~Vtli~~~~~l~~------------~----------------------------- 186 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYE-RGLHPTLIHRSDKINK------------L----------------------------- 186 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCCcEEEEecccccch------------h-----------------------------
Confidence 479999999999999999999 9999999997542100 0
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCcc
Q 010693 166 YGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASS 228 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~ 228 (503)
. ...+.+.+.+.+++.|++++ +++|++++. . .+++.+|+++.+|.||.|.|....
T Consensus 187 ---~-d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~--~v~~~~g~~~~~D~vl~a~G~~pn 242 (438)
T PRK13512 187 ---M-DADMNQPILDELDKREIPYRLNEEIDAING--N--EVTFKSGKVEHYDMIIEGVGTHPN 242 (438)
T ss_pred ---c-CHHHHHHHHHHHHhcCCEEEECCeEEEEeC--C--EEEECCCCEEEeCEEEECcCCCcC
Confidence 0 01234555666677899999 899999863 2 456677888999999999998764
No 288
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.89 E-value=0.00014 Score=76.11 Aligned_cols=97 Identities=18% Similarity=0.238 Sum_probs=74.6
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
-.|+|||||+.|+-+|..|++ .|.+|+++|+.+... +.
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~-~g~~Vtli~~~~~~l--------------------------------~~--------- 196 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFAN-FGSKVTILEAASLFL--------------------------------PR--------- 196 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHH-CCCeEEEEecCCCCC--------------------------------CC---------
Confidence 379999999999999999999 999999999753110 00
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCccc
Q 010693 166 YGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSF 229 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~v 229 (503)
.+ ..+.+.+.+.+++.|++++ +++|++++.+++.+.+.++++ ++.+|.||.|.|..+..
T Consensus 197 ---~~-~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 197 ---ED-RDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQPAT 256 (441)
T ss_pred ---cC-HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCCcCC
Confidence 00 1233456667778999999 899999988777777766555 58999999999987753
No 289
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.89 E-value=0.00013 Score=76.35 Aligned_cols=97 Identities=21% Similarity=0.297 Sum_probs=71.9
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
-.|+|||||++|+-+|..|++ .|.+|+++++.+... . ..
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~-~g~~Vtli~~~~~~l--------------------------------~--------~~ 188 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKH-LGKNVRIIQLEDRIL--------------------------------P--------DS 188 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHh-cCCcEEEEeCCcccC--------------------------------c--------hh
Confidence 479999999999999999999 999999999643210 0 00
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCcc
Q 010693 166 YGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASS 228 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~ 228 (503)
+ ...+.+.+.+.+++.|++++ +++|+++..+++...+.++ +.++.+|.||.|+|..+.
T Consensus 189 ~----~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~-~~~i~~d~vi~a~G~~p~ 247 (444)
T PRK09564 189 F----DKEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTD-KGEYEADVVIVATGVKPN 247 (444)
T ss_pred c----CHHHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeC-CCEEEcCEEEECcCCCcC
Confidence 0 12245566677778999999 9999999754443444444 457999999999998653
No 290
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.88 E-value=4.2e-05 Score=77.46 Aligned_cols=35 Identities=37% Similarity=0.476 Sum_probs=32.0
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCC
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPL 120 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~ 120 (503)
..+|+|||||++|+.+|..|++ .|++|+++|+.+.
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~-~g~~v~lie~~~~ 52 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLAC-LGYEVHVYDKLPE 52 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHH-CCCcEEEEeCCCC
Confidence 3689999999999999999999 9999999998653
No 291
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.86 E-value=0.00016 Score=75.75 Aligned_cols=96 Identities=18% Similarity=0.254 Sum_probs=71.9
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
-.++|||||+.|+-+|..|++ .|.+|++||+.+... ..
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~-~G~~Vtli~~~~~ll------------~~----------------------------- 207 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSA-LGTRVTIVNRSTKLL------------RH----------------------------- 207 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHh-CCCcEEEEEccCccc------------cc-----------------------------
Confidence 479999999999999999999 999999999753210 00
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCcc
Q 010693 166 YGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASS 228 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~ 228 (503)
.+ ..+.+.+.+ ..+.|++++ +++|++++.+++.+.+.+.+|+++.+|.||.|+|..+.
T Consensus 208 ---~d-~~~~~~l~~-~~~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn 266 (452)
T TIGR03452 208 ---LD-EDISDRFTE-IAKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPN 266 (452)
T ss_pred ---cC-HHHHHHHHH-HHhcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcC
Confidence 00 001122222 224589999 89999998777777788878888999999999998764
No 292
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.86 E-value=3.3e-05 Score=81.59 Aligned_cols=97 Identities=21% Similarity=0.330 Sum_probs=62.3
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLD 163 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (503)
...+|+||||||+|+++|..|++ .|++|+|+|+.+..+..-.+ ++
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~-~g~~V~v~e~~~~~gG~l~~----------gi------------------------ 186 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNR-AGHTVTVFEREDRCGGLLMY----------GI------------------------ 186 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH-cCCeEEEEecCCCCCceeec----------cC------------------------
Confidence 34699999999999999999999 99999999976532210000 00
Q ss_pred CCccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCC
Q 010693 164 RPYGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFA 226 (503)
Q Consensus 164 ~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~ 226 (503)
+...++.. +.....+.+++.|++++ ++.|.. + +. .++....+|.||.|+|..
T Consensus 187 -p~~~~~~~-~~~~~~~~~~~~Gv~~~~~~~v~~-~-------~~-~~~~~~~~d~VilAtGa~ 239 (485)
T TIGR01317 187 -PNMKLDKA-IVDRRIDLLSAEGIDFVTNTEIGV-D-------IS-ADELKEQFDAVVLAGGAT 239 (485)
T ss_pred -CCccCCHH-HHHHHHHHHHhCCCEEECCCEeCC-c-------cC-HHHHHhhCCEEEEccCCC
Confidence 00012222 23333456677899999 777631 1 00 011235789999999987
No 293
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.85 E-value=3.2e-05 Score=84.57 Aligned_cols=36 Identities=33% Similarity=0.389 Sum_probs=32.9
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPL 120 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~ 120 (503)
...+|+||||||||+++|..|++ .|++|+|||+.+.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~-~G~~Vtv~e~~~~ 227 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLR-KGHDVTIFDANEQ 227 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence 45799999999999999999999 9999999998654
No 294
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.85 E-value=0.00016 Score=76.23 Aligned_cols=99 Identities=14% Similarity=0.199 Sum_probs=73.3
Q ss_pred CcEEEECCCHHHHHHHHHHHc--cCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSS--RHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLD 163 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~--~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (503)
-.++|||||+.|+-+|..++. ..|.+|+|+|+.+...
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il----------------------------------------- 226 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL----------------------------------------- 226 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc-----------------------------------------
Confidence 469999999999999976654 1499999999754210
Q ss_pred CCccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCC-EEEEEeCCCcEEEeceEEecCCCCccc
Q 010693 164 RPYGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEF-ESSIVCDDGNEIKASLIVDASGFASSF 229 (503)
Q Consensus 164 ~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~-~~~v~~~~g~~i~a~~vI~A~G~~s~v 229 (503)
+ ..+ ..+.+.+.+.+++.|++++ +++|+++..+++ ...+.+.+|+++.+|.||.|+|..+..
T Consensus 227 -~--~~d-~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~ 290 (486)
T TIGR01423 227 -R--GFD-STLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRT 290 (486)
T ss_pred -c--ccC-HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCc
Confidence 0 001 2334556666677899999 999999986544 356777778889999999999987654
No 295
>PRK14727 putative mercuric reductase; Provisional
Probab=97.84 E-value=0.00022 Score=75.39 Aligned_cols=96 Identities=16% Similarity=0.228 Sum_probs=73.9
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
-.|+|||||+.|+-+|..|++ .|.+|+++++... +...
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~-~G~~Vtlv~~~~~-------------l~~~---------------------------- 226 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYAR-LGSRVTILARSTL-------------LFRE---------------------------- 226 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHH-cCCEEEEEEcCCC-------------CCcc----------------------------
Confidence 469999999999999999999 9999999985310 0000
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCccc
Q 010693 166 YGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSF 229 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~v 229 (503)
...+.+.+.+.+++.|++++ +++|+.++.+++.+.+.+.++ ++.+|.||.|.|..+..
T Consensus 227 -----d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~ 285 (479)
T PRK14727 227 -----DPLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANT 285 (479)
T ss_pred -----hHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCc
Confidence 01233456666678899999 899999987777777766655 69999999999988754
No 296
>PRK14694 putative mercuric reductase; Provisional
Probab=97.84 E-value=0.00022 Score=75.20 Aligned_cols=96 Identities=15% Similarity=0.215 Sum_probs=73.0
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
-.++|||+|+.|+-+|..|++ .|.+|+++++.... . .
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~-~g~~Vtlv~~~~~l----------------~-----------------~--------- 215 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFAR-LGSRVTVLARSRVL----------------S-----------------Q--------- 215 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHH-cCCeEEEEECCCCC----------------C-----------------C---------
Confidence 479999999999999999999 99999999853100 0 0
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCccc
Q 010693 166 YGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSF 229 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~v 229 (503)
. ...+.+.+.+.+++.|++++ +++|+.++.+++.+.+.++++ ++.+|.||.|.|..+..
T Consensus 216 ---~-~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~ 275 (468)
T PRK14694 216 ---E-DPAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNAG-TLRAEQLLVATGRTPNT 275 (468)
T ss_pred ---C-CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCC-EEEeCEEEEccCCCCCc
Confidence 0 01233455666677899999 899999987766666666544 79999999999987754
No 297
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.84 E-value=0.0002 Score=76.06 Aligned_cols=96 Identities=16% Similarity=0.189 Sum_probs=74.2
Q ss_pred cEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCCc
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRPY 166 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (503)
+++|||||+.|+-+|..|++ .|.+|+|+++... +..+
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~-~G~~Vtli~~~~~-------------l~~~----------------------------- 220 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNE-LGFDVTVAVRSIP-------------LRGF----------------------------- 220 (499)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCcEEEEEcCcc-------------cccC-----------------------------
Confidence 79999999999999999999 9999999985210 0000
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCccc
Q 010693 167 GRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSF 229 (503)
Q Consensus 167 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~v 229 (503)
...+.+.+.+.+++.|++++ ++++..+...++.+.+.+.+|+++.+|.||.|.|..+..
T Consensus 221 ----d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~ 280 (499)
T PTZ00052 221 ----DRQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDI 280 (499)
T ss_pred ----CHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCc
Confidence 01123455566677899999 889998887666667777888889999999999987754
No 298
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.83 E-value=1.8e-05 Score=83.93 Aligned_cols=55 Identities=18% Similarity=0.167 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEE-EEEeCCC-----cEEEeceEEecCCCC
Q 010693 172 NILKTKLLENCVSNGVKFH-KAKVWHVNHQEFES-SIVCDDG-----NEIKASLIVDASGFA 226 (503)
Q Consensus 172 ~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~-~v~~~~g-----~~i~a~~vI~A~G~~ 226 (503)
..+.+.|.+.+++.|++|+ +++|++|..+++.+ .|.+.+| +++.||.||.+....
T Consensus 232 ~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 232 QTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence 4566677888888899999 99999999887642 3444343 579999999998764
No 299
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.81 E-value=0.00014 Score=70.42 Aligned_cols=142 Identities=21% Similarity=0.237 Sum_probs=78.0
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCC-CCCCCcccc------hhHhhhhcCchhhhhhccCce-EEE
Q 010693 82 DRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPL-STWPNNYGV------WVDEFEDIGLVDCLDKTWPMT-CVF 153 (503)
Q Consensus 82 ~~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~-~~~~~~~g~------~~~~l~~~~~~~~~~~~~~~~-~~~ 153 (503)
...+||.+|||||-.|+++|...+. .|.+|.|+|..-. .+...+.|+ |......-.+++.-++.|+.. ...
T Consensus 17 ~~k~fDylvIGgGSGGvasARrAa~-~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~ 95 (478)
T KOG0405|consen 17 DVKDFDYLVIGGGSGGVASARRAAS-HGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGS 95 (478)
T ss_pred cccccceEEEcCCcchhHHhHHHHh-cCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccC
Confidence 4458999999999999999999999 9999999996421 222222333 221111112233333444431 111
Q ss_pred ecCCcccccCCCccccCHHHHHHHHHHH-HHhCCcEEEEeEEEEEEEeCCEEEEEeCCCc--EEEeceEEecCCCCcccc
Q 010693 154 INDHKTKYLDRPYGRVSRNILKTKLLEN-CVSNGVKFHKAKVWHVNHQEFESSIVCDDGN--EIKASLIVDASGFASSFV 230 (503)
Q Consensus 154 ~~~~~~~~~~~~~~~v~r~~l~~~L~~~-~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g~--~i~a~~vI~A~G~~s~vr 230 (503)
|+...... ..-.++.| | ..+.++ +...+|+++..+..-+. ++.+.|...||. .++|+.+..|+|....+.
T Consensus 96 fdW~~ik~--krdayi~R--L-ngIY~~~L~k~~V~~i~G~a~f~~--~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~P 168 (478)
T KOG0405|consen 96 FDWKVIKQ--KRDAYILR--L-NGIYKRNLAKAAVKLIEGRARFVS--PGEVEVEVNDGTKIVYTAKHILIATGGRPIIP 168 (478)
T ss_pred CcHHHHHh--hhhHHHHH--H-HHHHHhhccccceeEEeeeEEEcC--CCceEEEecCCeeEEEecceEEEEeCCccCCC
Confidence 11110000 00111111 1 122222 23466777732222222 456788888885 379999999999887654
Q ss_pred c
Q 010693 231 E 231 (503)
Q Consensus 231 ~ 231 (503)
.
T Consensus 169 n 169 (478)
T KOG0405|consen 169 N 169 (478)
T ss_pred C
Confidence 3
No 300
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.80 E-value=0.00018 Score=80.64 Aligned_cols=97 Identities=19% Similarity=0.313 Sum_probs=74.2
Q ss_pred cEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCCc
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRPY 166 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (503)
.++|||||+.|+-+|..|++ .|.+|+|+|+.+... . . .
T Consensus 147 ~vvVIGgG~iGlE~A~~L~~-~G~~VtvVe~~~~ll------------~-~-----------------------~----- 184 (847)
T PRK14989 147 RGAVVGGGLLGLEAAGALKN-LGVETHVIEFAPMLM------------A-E-----------------------Q----- 184 (847)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCeEEEEeccccch------------h-h-----------------------h-----
Confidence 58999999999999999999 999999999654200 0 0 0
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeC--CEEEEEeCCCcEEEeceEEecCCCCcc
Q 010693 167 GRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQE--FESSIVCDDGNEIKASLIVDASGFASS 228 (503)
Q Consensus 167 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~--~~~~v~~~~g~~i~a~~vI~A~G~~s~ 228 (503)
++ ....+.+.+.+++.||+++ ++.++++..++ ....+.+.||+++.+|+||.|.|....
T Consensus 185 --ld-~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn 246 (847)
T PRK14989 185 --LD-QMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQ 246 (847)
T ss_pred --cC-HHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccC
Confidence 01 1123456666678999999 99999997643 345677889999999999999997764
No 301
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.80 E-value=0.001 Score=67.64 Aligned_cols=91 Identities=20% Similarity=0.288 Sum_probs=63.4
Q ss_pred cEEEECCCHHHHHHHHHHHc---cCC--CcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccc
Q 010693 87 DVIIIGTGPAGLRLAEQVSS---RHS--VKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKY 161 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~---~~G--~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (503)
.|+|||||++|+-+|..|++ +.| .+|+|+. .+..
T Consensus 147 ~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~-~~~~---------------------------------------- 185 (364)
T TIGR03169 147 RLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIA-GASL---------------------------------------- 185 (364)
T ss_pred eEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEe-CCcc----------------------------------------
Confidence 79999999999999999985 134 3677762 1100
Q ss_pred cCCCccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCc
Q 010693 162 LDRPYGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFAS 227 (503)
Q Consensus 162 ~~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s 227 (503)
+ .. + ...+...+.+.+++.|++++ +++|.+++. + .+.+.+|+++.+|.||.|.|...
T Consensus 186 l-~~---~-~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 186 L-PG---F-PAKVRRLVLRLLARRGIEVHEGAPVTRGPD--G--ALILADGRTLPADAILWATGARA 243 (364)
T ss_pred c-cc---C-CHHHHHHHHHHHHHCCCEEEeCCeeEEEcC--C--eEEeCCCCEEecCEEEEccCCCh
Confidence 0 00 0 01133455566677899999 889998853 2 46677888999999999999654
No 302
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.80 E-value=0.00016 Score=74.48 Aligned_cols=98 Identities=28% Similarity=0.347 Sum_probs=78.3
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
-+++|||+|++|+.+|..|++ +|.+|+++|+.+.... .
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~-~G~~v~l~e~~~~~~~-----------------------------------------~ 174 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAK-RGKKVTLIEAADRLGG-----------------------------------------Q 174 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHH-cCCeEEEEEcccccch-----------------------------------------h
Confidence 699999999999999999999 9999999997542111 0
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEE---EEeCCCcEEEeceEEecCCCCcc
Q 010693 166 YGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESS---IVCDDGNEIKASLIVDASGFASS 228 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~---v~~~~g~~i~a~~vI~A~G~~s~ 228 (503)
. .. ..+.+.+.+..++.|++++ +.++.+++..++... +...++..+.+|+++.+.|....
T Consensus 175 ~--~~-~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 175 L--LD-PEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPN 238 (415)
T ss_pred h--hh-HHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence 0 00 4566777778888999998 999999998766433 57777889999999999998773
No 303
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=2.2e-05 Score=80.40 Aligned_cols=35 Identities=26% Similarity=0.278 Sum_probs=32.9
Q ss_pred cEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCC
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLST 122 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~ 122 (503)
.|+|+|||+|||+||+.|+. +|++|+|+|+++..+
T Consensus 2 rVai~GaG~AgL~~a~~La~-~g~~vt~~ea~~~~G 36 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELAD-AGYDVTLYEARDRLG 36 (485)
T ss_pred eEEEEcccHHHHHHHHHHHh-CCCceEEEeccCccC
Confidence 69999999999999999999 999999999997764
No 304
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.76 E-value=0.00029 Score=74.47 Aligned_cols=96 Identities=18% Similarity=0.172 Sum_probs=71.9
Q ss_pred cEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCCc
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRPY 166 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (503)
.++|||||+.|+-+|..|++ .|.+|+|+++.. . +..
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~-~G~~Vtli~~~~-~------------l~~------------------------------ 217 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAG-IGLDVTVMVRSI-L------------LRG------------------------------ 217 (484)
T ss_pred CEEEECCCHHHHHHHHHHHH-hCCcEEEEEecc-c------------ccc------------------------------
Confidence 69999999999999999999 999999998521 0 000
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCC---cEEEeceEEecCCCCccc
Q 010693 167 GRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDG---NEIKASLIVDASGFASSF 229 (503)
Q Consensus 167 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g---~~i~a~~vI~A~G~~s~v 229 (503)
.+ ..+.+.+.+.+++.|++++ ++.++++...++.+.|.+.++ +++.+|.||.|.|.....
T Consensus 218 --~d-~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~ 281 (484)
T TIGR01438 218 --FD-QDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACT 281 (484)
T ss_pred --cC-HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCC
Confidence 00 1123455566667899999 889999887666666766655 379999999999987643
No 305
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.76 E-value=4.2e-05 Score=73.98 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=33.7
Q ss_pred cEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCC
Q 010693 187 VKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFA 226 (503)
Q Consensus 187 v~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~ 226 (503)
.++. ++.|..+..-.+++.++-.||++-+.|.||.|+=..
T Consensus 232 ~~i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~d 272 (447)
T COG2907 232 GRIETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHPD 272 (447)
T ss_pred ceeecCCceeeeeeCCCceEEecCCCCccccceeeeecChH
Confidence 3577 788999999999999988889988999999998443
No 306
>PRK13748 putative mercuric reductase; Provisional
Probab=97.75 E-value=0.00032 Score=75.81 Aligned_cols=96 Identities=20% Similarity=0.262 Sum_probs=73.0
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
-.++|||||+.|+-+|..|++ .|.+|+|+++.+. . ...
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~-~g~~Vtli~~~~~--l-----------~~~---------------------------- 308 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFAR-LGSKVTILARSTL--F-----------FRE---------------------------- 308 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHH-cCCEEEEEecCcc--c-----------ccc----------------------------
Confidence 479999999999999999999 9999999996310 0 000
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCccc
Q 010693 166 YGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSF 229 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~v 229 (503)
...+.+.+.+.+++.|++++ +++|++++.+++.+.+.+.++ ++.+|.||.|.|.....
T Consensus 309 -----d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 309 -----DPAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNT 367 (561)
T ss_pred -----CHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCC
Confidence 01123445556667899999 999999987776666666655 69999999999987654
No 307
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.74 E-value=0.0003 Score=74.16 Aligned_cols=97 Identities=12% Similarity=0.110 Sum_probs=71.8
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
-+++|||||+.|+-+|..|++ .|.+|+|+|+.+... + .
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~-~G~~Vtlv~~~~~il--------------------------------~---------~ 212 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHR-LGSEVDVVEMFDQVI--------------------------------P---------A 212 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHH-cCCCEEEEecCCCCC--------------------------------C---------c
Confidence 479999999999999999999 999999999754210 0 0
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCC--C--cEEEeceEEecCCCCccc
Q 010693 166 YGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDD--G--NEIKASLIVDASGFASSF 229 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~--g--~~i~a~~vI~A~G~~s~v 229 (503)
.+ ..+.+.+.+.+++. ++++ +++|+.++.+++.+.+.+.+ | .++.+|.||.|.|..+..
T Consensus 213 ---~d-~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~ 276 (471)
T PRK06467 213 ---AD-KDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNG 276 (471)
T ss_pred ---CC-HHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccC
Confidence 00 11233444555556 8888 89999998777777776544 2 369999999999987754
No 308
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=7.2e-05 Score=71.81 Aligned_cols=111 Identities=16% Similarity=0.177 Sum_probs=66.6
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccc-hh-----H------hhhhcCchhhhhhccCceEE
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGV-WV-----D------EFEDIGLVDCLDKTWPMTCV 152 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~-~~-----~------~l~~~~~~~~~~~~~~~~~~ 152 (503)
.--|-|||||.||.-+|+++|+ +|+.|.++|-++....|.+-.. .. . .-.+-|+...-...-+...+
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~-~Gv~V~L~EMRp~k~TpaH~td~fAELVCSNSlr~~~~~navGlLk~EMR~lgSlii 81 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAK-RGVPVILYEMRPVKGTPAHKTDNFAELVCSNSLRSDALTNAVGLLKAEMRLLGSLII 81 (439)
T ss_pred CCceEEEcccccccHHHHHHHH-cCCcEEEEEcccccCCCcccccchhhheeccccccchhhhhhHHHHHHHHHhhhHHh
Confidence 3458899999999999999999 9999999998876554443111 00 0 01112221111111111111
Q ss_pred EecCCcccccCCCcc-ccCHHHHHHHHHHHHHh-CCcEEEEeEEEEEE
Q 010693 153 FINDHKTKYLDRPYG-RVSRNILKTKLLENCVS-NGVKFHKAKVWHVN 198 (503)
Q Consensus 153 ~~~~~~~~~~~~~~~-~v~r~~l~~~L~~~~~~-~gv~~~~~~v~~i~ 198 (503)
...+.. ..+..-+ -|||..|.+.+.+.+++ +.|+++..+|+++-
T Consensus 82 ~~Ad~~--~VPAGgALAVDR~~Fs~~vT~~l~~hpli~vireEvt~iP 127 (439)
T COG1206 82 EAADKH--RVPAGGALAVDRDGFSQAVTEKLENHPLIEVIREEVTEIP 127 (439)
T ss_pred hhhhhc--cCCCCceeeecHhHHHHHHHHHHhcCCCEEEEccccccCC
Confidence 111111 2222222 29999999999999887 56888877777764
No 309
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.71 E-value=4.9e-05 Score=68.40 Aligned_cols=133 Identities=24% Similarity=0.386 Sum_probs=73.5
Q ss_pred CcCcEEEECCCHHHHHHHHHHHc-cCCCcEEEEcCCCCCCCCCcccchhHh--hhhcCc---hhhhhhccCceEEEecCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSS-RHSVKVCCVDPSPLSTWPNNYGVWVDE--FEDIGL---VDCLDKTWPMTCVFINDH 157 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~-~~G~~V~viE~~~~~~~~~~~g~~~~~--l~~~~~---~~~~~~~~~~~~~~~~~~ 157 (503)
...||+|||+|-+||++|+..++ +..++|+|||..-.++. |.|+.. +.++-+ .+++-.... +-.++
T Consensus 75 AesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGG----GaWLGGQLFSAMvvRKPAhLFL~Eig---vpYed- 146 (328)
T KOG2960|consen 75 AESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGG----GAWLGGQLFSAMVVRKPAHLFLQEIG---VPYED- 146 (328)
T ss_pred hccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCC----cccccchhhhhhhhcChHHHHHHHhC---CCccc-
Confidence 45799999999999999999986 46799999997643332 334321 222211 111111000 00011
Q ss_pred cccccCCCccccC-HHHHHHHHHHHHH-hCCcEEE-EeEEEEEEEeCC---EE---------EEEeC--------CCcEE
Q 010693 158 KTKYLDRPYGRVS-RNILKTKLLENCV-SNGVKFH-KAKVWHVNHQEF---ES---------SIVCD--------DGNEI 214 (503)
Q Consensus 158 ~~~~~~~~~~~v~-r~~l~~~L~~~~~-~~gv~~~-~~~v~~i~~~~~---~~---------~v~~~--------~g~~i 214 (503)
...|-.|. -..|...+..+.. .++++++ -+.|+++...++ .+ .+... |-..+
T Consensus 147 -----egdYVVVKHAALFtSTvmsk~LalPNVKLFNAtavEDLivk~g~~g~~rvaGVVTNWtLV~qnHgtQsCMDPNvi 221 (328)
T KOG2960|consen 147 -----EGDYVVVKHAALFTSTVMSKVLALPNVKLFNATAVEDLIVKPGEKGEVRVAGVVTNWTLVTQNHGTQSCMDPNVI 221 (328)
T ss_pred -----CCCEEEEeeHHHHHHHHHHHHhcCCcceeechhhhhhhhcccCcCCceEEEEEEeeeEEeeeccCccccCCCCee
Confidence 12332232 3444444444443 4788888 567777654421 11 12221 22368
Q ss_pred EeceEEecCCCCccc
Q 010693 215 KASLIVDASGFASSF 229 (503)
Q Consensus 215 ~a~~vI~A~G~~s~v 229 (503)
++.+||-++|+..++
T Consensus 222 ea~~vvS~tGHDGPF 236 (328)
T KOG2960|consen 222 EAAVVVSTTGHDGPF 236 (328)
T ss_pred eEEEEEEccCCCCCc
Confidence 899999999887643
No 310
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.71 E-value=5.4e-05 Score=81.66 Aligned_cols=36 Identities=31% Similarity=0.434 Sum_probs=32.7
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPL 120 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~ 120 (503)
..-+|+|||+||+||++|..|++ .|++|+|+|+.+.
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~-~G~~V~v~e~~~~ 171 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRR-MGHAVTIFEAGPK 171 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence 35689999999999999999999 9999999998764
No 311
>PTZ00058 glutathione reductase; Provisional
Probab=97.71 E-value=0.00041 Score=74.28 Aligned_cols=98 Identities=13% Similarity=0.143 Sum_probs=72.5
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
-.|+|||||..|+-+|..|++ .|.+|+++|+.+... +
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~-~G~~Vtli~~~~~il------------------------------------------~ 274 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNR-LGAESYIFARGNRLL------------------------------------------R 274 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHH-cCCcEEEEEeccccc------------------------------------------c
Confidence 479999999999999999999 999999999753200 0
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCC-EEEEEeCCC-cEEEeceEEecCCCCccc
Q 010693 166 YGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEF-ESSIVCDDG-NEIKASLIVDASGFASSF 229 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~-~~~v~~~~g-~~i~a~~vI~A~G~~s~v 229 (503)
.++ ..+.+.+.+.+++.|++++ +++|.+++.+++ .+.+...++ +++.+|.||.|.|..+..
T Consensus 275 --~~d-~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~ 338 (561)
T PTZ00058 275 --KFD-ETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNT 338 (561)
T ss_pred --cCC-HHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCc
Confidence 011 1233445556667899999 899999986543 455555444 479999999999987643
No 312
>PRK13984 putative oxidoreductase; Provisional
Probab=97.65 E-value=7.7e-05 Score=81.22 Aligned_cols=36 Identities=28% Similarity=0.390 Sum_probs=32.9
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPL 120 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~ 120 (503)
...+|+|||+||||+++|..|++ .|++|+|||+.+.
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~-~G~~v~vie~~~~ 317 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLAT-MGYEVTVYESLSK 317 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence 45789999999999999999999 9999999998653
No 313
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.65 E-value=0.00021 Score=72.48 Aligned_cols=94 Identities=24% Similarity=0.351 Sum_probs=67.5
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccC-------------CCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCce
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRH-------------SVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMT 150 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~-------------G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~ 150 (503)
...+++|||||+.|.=+|-.|+. . .++|+|+|+.|..
T Consensus 154 ~~lti~IvGgG~TGVElAgeL~~-~~~~l~~~~~~~~~~~~V~LVea~p~I----------------------------- 203 (405)
T COG1252 154 ALLTIVIVGGGPTGVELAGELAE-RLHRLLKKFRVDPSELRVILVEAGPRI----------------------------- 203 (405)
T ss_pred ceeEEEEECCChhHHHHHHHHHH-HHHHHhhhhcCCccccEEEEEccCchh-----------------------------
Confidence 34689999999999999999987 1 1255566554321
Q ss_pred EEEecCCcccccCCCccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCc-EEEeceEEecCCCCc
Q 010693 151 CVFINDHKTKYLDRPYGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGN-EIKASLIVDASGFAS 227 (503)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~-~i~a~~vI~A~G~~s 227 (503)
-+.+ .+.+.+...+.+++.||+++ ++.|++++.+. |++++|. +|.|+.+|.|.|...
T Consensus 204 ------------Lp~~----~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~----v~~~~g~~~I~~~tvvWaaGv~a 262 (405)
T COG1252 204 ------------LPMF----PPKLSKYAERALEKLGVEVLLGTPVTEVTPDG----VTLKDGEEEIPADTVVWAAGVRA 262 (405)
T ss_pred ------------ccCC----CHHHHHHHHHHHHHCCCEEEcCCceEEECCCc----EEEccCCeeEecCEEEEcCCCcC
Confidence 0111 23345566666778999999 99999998653 5666676 599999999999764
No 314
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.65 E-value=0.00037 Score=72.49 Aligned_cols=92 Identities=23% Similarity=0.379 Sum_probs=68.0
Q ss_pred cEEEECCCHHHHHHHHHHHcc-------------CCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEE
Q 010693 87 DVIIIGTGPAGLRLAEQVSSR-------------HSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVF 153 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~-------------~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~ 153 (503)
.|+|||||++|+-+|..|+.. .|.+|+++|+.+..
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l-------------------------------- 222 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV-------------------------------- 222 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcc--------------------------------
Confidence 799999999999999998750 26788888864321
Q ss_pred ecCCcccccCCCccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCc
Q 010693 154 INDHKTKYLDRPYGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFAS 227 (503)
Q Consensus 154 ~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s 227 (503)
+ .. .+ ..+.+.+.+.+++.||+++ +++|+++..+ .|.+++|+++.+|.+|.|.|...
T Consensus 223 --------l-~~---~~-~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~----~v~~~~g~~i~~d~vi~~~G~~~ 280 (424)
T PTZ00318 223 --------L-GS---FD-QALRKYGQRRLRRLGVDIRTKTAVKEVLDK----EVVLKDGEVIPTGLVVWSTGVGP 280 (424)
T ss_pred --------c-cc---CC-HHHHHHHHHHHHHCCCEEEeCCeEEEEeCC----EEEECCCCEEEccEEEEccCCCC
Confidence 0 00 11 1244556666778999999 9999988642 35678899999999999999654
No 315
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.64 E-value=6.1e-05 Score=72.22 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=34.3
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCC
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLST 122 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~ 122 (503)
++|++|||+|++|+.+|..|++ .|.+|+|+||++..+
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~-~gk~VLIvekR~HIG 37 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQ-LGKRVLIVEKRNHIG 37 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHH-cCCEEEEEeccccCC
Confidence 4899999999999999999999 999999999987664
No 316
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.64 E-value=0.00033 Score=67.12 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=30.3
Q ss_pred cEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCC
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLS 121 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~ 121 (503)
.|||||+|.|||+++..+-. .|-.|+++|+....
T Consensus 11 pvvVIGgGLAGLsasn~iin-~gg~V~llek~~s~ 44 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIIN-KGGIVILLEKAGSI 44 (477)
T ss_pred cEEEECCchhhhhhHHHHHh-cCCeEEEEeccCCc
Confidence 69999999999999999988 77779999987554
No 317
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.60 E-value=6.4e-05 Score=72.23 Aligned_cols=35 Identities=29% Similarity=0.467 Sum_probs=32.4
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
.+|||+|||||+||++||++|++ +|.+++||-++.
T Consensus 1 M~fDv~IIGGGLAGltc~l~l~~-~Gk~c~iv~~gQ 35 (421)
T COG3075 1 MNFDVAIIGGGLAGLTCGLALQQ-AGKRCAIVNRGQ 35 (421)
T ss_pred CcccEEEEcCcHHHHHHHHHHHh-cCCcEEEEeCCh
Confidence 36999999999999999999999 999999998764
No 318
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.60 E-value=8.4e-05 Score=81.59 Aligned_cols=36 Identities=39% Similarity=0.552 Sum_probs=32.9
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPL 120 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~ 120 (503)
...+|+|||||||||++|..|++ .|++|+|||+.+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~-~G~~V~V~E~~~~ 361 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLAR-NGVAVTVYDRHPE 361 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence 45799999999999999999999 9999999998654
No 319
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.59 E-value=6.3e-05 Score=79.59 Aligned_cols=36 Identities=33% Similarity=0.554 Sum_probs=33.7
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLST 122 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~ 122 (503)
|||+|||+||+|+.+|..|++ +|++|+|||++...+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~-~g~~v~~~e~~~~~~ 36 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVD-AGLKVAMVEIGAADS 36 (544)
T ss_pred CcEEEECCchHHHHHHHHHHH-CCCeEEEEeccCccC
Confidence 799999999999999999999 999999999987654
No 320
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.58 E-value=0.00091 Score=70.37 Aligned_cols=97 Identities=21% Similarity=0.191 Sum_probs=70.9
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
-.++|||||+.|+-+|..|++ .|.+|+++|+.+....
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~-~g~~Vtli~~~~~~l~------------------------------------------ 206 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSR-LGVKVTVFERGDRILP------------------------------------------ 206 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHH-cCCcEEEEecCCCcCc------------------------------------------
Confidence 479999999999999999999 9999999997642100
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCC-EEEEEeCCC--cEEEeceEEecCCCCccc
Q 010693 166 YGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEF-ESSIVCDDG--NEIKASLIVDASGFASSF 229 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~-~~~v~~~~g--~~i~a~~vI~A~G~~s~v 229 (503)
.. ...+.+.+.+.+++. ++++ +++|.+++.+++ .+.++..++ .++.+|.||.|.|.....
T Consensus 207 --~~-d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~ 270 (460)
T PRK06292 207 --LE-DPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNT 270 (460)
T ss_pred --ch-hHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCC
Confidence 00 012334555556667 9999 999999987654 455444333 479999999999987654
No 321
>PRK02106 choline dehydrogenase; Validated
Probab=97.55 E-value=7.8e-05 Score=80.36 Aligned_cols=37 Identities=38% Similarity=0.571 Sum_probs=33.4
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPL 120 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~ 120 (503)
..||+||||+|+||+.+|..|++..|++|+|||+++.
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 3599999999999999999999945999999999953
No 322
>PLN02546 glutathione reductase
Probab=97.55 E-value=0.00083 Score=71.94 Aligned_cols=98 Identities=15% Similarity=0.134 Sum_probs=72.0
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
-+|+|||||+.|+-+|..|++ .|.+|+|+|+.+.... .
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~-~g~~Vtlv~~~~~il~-----------------------------------------~ 290 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNG-LKSDVHVFIRQKKVLR-----------------------------------------G 290 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHh-cCCeEEEEEecccccc-----------------------------------------c
Confidence 479999999999999999999 9999999997542100 0
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEe-CCEEEEEeCCCcEEEeceEEecCCCCccc
Q 010693 166 YGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQ-EFESSIVCDDGNEIKASLIVDASGFASSF 229 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~-~~~~~v~~~~g~~i~a~~vI~A~G~~s~v 229 (503)
+ ...+...+.+.+++.||+++ +++++.+..+ ++.+.+.+.+++...+|.||.|.|..+..
T Consensus 291 ---~-d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt 352 (558)
T PLN02546 291 ---F-DEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNT 352 (558)
T ss_pred ---c-CHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCC
Confidence 0 11233455566667899999 9999999764 34455665555445589999999987754
No 323
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.55 E-value=8.7e-05 Score=74.77 Aligned_cols=38 Identities=29% Similarity=0.458 Sum_probs=34.4
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLST 122 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~ 122 (503)
..-+++|||||+||+.+|+.||+ .|++|.++|+.|..+
T Consensus 123 v~~svLVIGGGvAGitAAl~La~-~G~~v~LVEKepsiG 160 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELAD-MGFKVYLVEKEPSIG 160 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHH-cCCeEEEEecCCccc
Confidence 34679999999999999999999 999999999988654
No 324
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.54 E-value=0.00051 Score=68.23 Aligned_cols=146 Identities=16% Similarity=0.152 Sum_probs=87.4
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhH--hhhhcCchhhhhhccCceEEEecCCcc-
Q 010693 83 RIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVD--EFEDIGLVDCLDKTWPMTCVFINDHKT- 159 (503)
Q Consensus 83 ~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~- 159 (503)
+..+|+|.||-||+-|++|..|....+.+++.+||.|...|-.. ...+ .++---+.+++.-.-+...+.|-+...
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpG--mllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~ 80 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPG--MLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHE 80 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCC--cccCCccccccchhhhccccCCCCchHHHHHHHH
Confidence 45799999999999999999999933488999999887665322 2111 111111133332222222221111100
Q ss_pred -----cccCCCccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeC--CEEE--EEeCCCcEEEeceEEecCCCCccc
Q 010693 160 -----KYLDRPYGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQE--FESS--IVCDDGNEIKASLIVDASGFASSF 229 (503)
Q Consensus 160 -----~~~~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~--~~~~--v~~~~g~~i~a~~vI~A~G~~s~v 229 (503)
..+....-.+.|..+.+++.=.+... -.++ +++|++|...+ .... +++.++...+|+-||...|....+
T Consensus 81 h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~I 159 (436)
T COG3486 81 HGRLYEFLNYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPYI 159 (436)
T ss_pred cchHhhhhhhhcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcCC
Confidence 01111222367888888776666554 3455 88898773322 2333 666777799999999999988866
Q ss_pred cc
Q 010693 230 VE 231 (503)
Q Consensus 230 r~ 231 (503)
..
T Consensus 160 P~ 161 (436)
T COG3486 160 PP 161 (436)
T ss_pred Ch
Confidence 54
No 325
>PLN02568 polyamine oxidase
Probab=97.53 E-value=0.00011 Score=78.46 Aligned_cols=50 Identities=14% Similarity=0.142 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCC
Q 010693 174 LKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGF 225 (503)
Q Consensus 174 l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~ 225 (503)
|.+.|.+.+ .+..++ +++|+.|..+++++.|.+.+|+++.||.||.|.-.
T Consensus 244 Li~~La~~L--~~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl 294 (539)
T PLN02568 244 VIEALASVL--PPGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSL 294 (539)
T ss_pred HHHHHHhhC--CCCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCH
Confidence 444444433 233577 99999999998899999999989999999999753
No 326
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.52 E-value=0.00015 Score=75.14 Aligned_cols=37 Identities=30% Similarity=0.442 Sum_probs=31.6
Q ss_pred cCcEEEECCCHHHHHHHHHH-HccCCCcEEEEcCCCCCC
Q 010693 85 RYDVIIIGTGPAGLRLAEQV-SSRHSVKVCCVDPSPLST 122 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~L-a~~~G~~V~viE~~~~~~ 122 (503)
...|+||||||||+.+|..| ++ .|++|+|||+.+.+.
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~-~g~~VtlfEk~p~pg 76 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKH-ERVKVDIFEKLPNPY 76 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHh-cCCeEEEEecCCCCc
Confidence 46799999999999999976 46 799999999877543
No 327
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=97.52 E-value=0.00036 Score=69.85 Aligned_cols=59 Identities=17% Similarity=0.245 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhCCcEEE-EeEEEEEEEeCC-EEEEEeCCCcEEEeceEEecCCCCccccc
Q 010693 173 ILKTKLLENCVSNGVKFH-KAKVWHVNHQEF-ESSIVCDDGNEIKASLIVDASGFASSFVE 231 (503)
Q Consensus 173 ~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~-~~~v~~~~g~~i~a~~vI~A~G~~s~vr~ 231 (503)
.+..++.+.+++.|.++. ++.|++|..+++ .+.|.+.||++++++.||--.+.+...-+
T Consensus 265 avs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~k 325 (561)
T KOG4254|consen 265 AVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEK 325 (561)
T ss_pred HHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHH
Confidence 455577888889999999 999999988876 45688999999999999987777665544
No 328
>PLN02676 polyamine oxidase
Probab=97.52 E-value=0.00012 Score=77.31 Aligned_cols=41 Identities=10% Similarity=0.229 Sum_probs=36.7
Q ss_pred cEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCc
Q 010693 187 VKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFAS 227 (503)
Q Consensus 187 v~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s 227 (503)
.+++ +++|++|..+++++.|.+.+|++++||.||.|...+.
T Consensus 245 ~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~v 286 (487)
T PLN02676 245 PRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLGV 286 (487)
T ss_pred CceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChHH
Confidence 5688 9999999999889999999999999999999997543
No 329
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.50 E-value=0.00096 Score=65.60 Aligned_cols=90 Identities=19% Similarity=0.230 Sum_probs=65.1
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
-+|+|||+|++|+-+|..|++ .|.+|+++++.+... .
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~-~~~~V~~v~~~~~~~----------------~-------------------------- 178 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTR-IAKKVTLVHRRDKFR----------------A-------------------------- 178 (300)
T ss_pred CEEEEECCChHHHHHHHHHHh-hcCEEEEEEeCcccC----------------c--------------------------
Confidence 489999999999999999999 999999999743100 0
Q ss_pred ccccCHHHHHHHHHHHHHhC-CcEEE-EeEEEEEEEeCCEEEEEeC---CC--cEEEeceEEecCCCCc
Q 010693 166 YGRVSRNILKTKLLENCVSN-GVKFH-KAKVWHVNHQEFESSIVCD---DG--NEIKASLIVDASGFAS 227 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~~-gv~~~-~~~v~~i~~~~~~~~v~~~---~g--~~i~a~~vI~A~G~~s 227 (503)
...+.+.+.+. |++++ ++++++++.++....+.+. +| .++.+|.||.|+|...
T Consensus 179 ---------~~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~ 238 (300)
T TIGR01292 179 ---------EKILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEP 238 (300)
T ss_pred ---------CHHHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCCC
Confidence 01123344455 99999 8999999865533233332 23 4799999999999654
No 330
>PLN02529 lysine-specific histone demethylase 1
Probab=97.47 E-value=0.00015 Score=79.40 Aligned_cols=38 Identities=34% Similarity=0.413 Sum_probs=34.5
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCC
Q 010693 83 RIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLS 121 (503)
Q Consensus 83 ~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~ 121 (503)
....||+|||||+||+++|..|++ +|++|+|+|+++..
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~-~g~~v~v~E~~~~~ 195 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLS-FGFKVVVLEGRNRP 195 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHH-cCCcEEEEecCccC
Confidence 356899999999999999999999 99999999997654
No 331
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.40 E-value=0.00019 Score=74.50 Aligned_cols=47 Identities=32% Similarity=0.461 Sum_probs=40.0
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccc
Q 010693 82 DRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGV 129 (503)
Q Consensus 82 ~~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~ 129 (503)
....-.|+|||+|||||++|..|++ .|++|+|+|+.+..+..-.||.
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~-~G~~Vtv~e~~~~~GGll~yGI 166 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSR-AGHDVTVFERVALDGGLLLYGI 166 (457)
T ss_pred CCCCCEEEEECCCchHhhhHHHHHh-CCCeEEEeCCcCCCceeEEecC
Confidence 3344899999999999999999999 9999999999888765555553
No 332
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.36 E-value=0.00019 Score=76.77 Aligned_cols=38 Identities=29% Similarity=0.538 Sum_probs=34.8
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCC
Q 010693 82 DRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPL 120 (503)
Q Consensus 82 ~~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~ 120 (503)
...+||+||||+|.+|+.+|..|+. .|++|+|+|+++.
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~-~g~~VllLEaG~~ 41 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSD-AGLSVLVLEAGGP 41 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcC-CCCeEEEEeCCCC
Confidence 3467999999999999999999998 9999999999953
No 333
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.35 E-value=0.00025 Score=78.11 Aligned_cols=39 Identities=28% Similarity=0.358 Sum_probs=35.0
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCC
Q 010693 83 RIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLST 122 (503)
Q Consensus 83 ~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~ 122 (503)
....+|+|||||++|+++|+.|++ .|++|+|+|++...+
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~-~g~~v~v~E~~~r~G 274 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLS-MGFKVVVLEGRARPG 274 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHH-CCCcEEEEeccccCC
Confidence 346899999999999999999999 999999999986553
No 334
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.35 E-value=0.0019 Score=70.27 Aligned_cols=98 Identities=17% Similarity=0.115 Sum_probs=69.4
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
-.|+|||||..|+-+|..|++ .|.+|+++|+.+....
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~-~G~eVTLIe~~~~ll~------------------------------------------ 349 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTA-LGSEVVSFEYSPQLLP------------------------------------------ 349 (659)
T ss_pred CceEEECCCHHHHHHHHHHHh-CCCeEEEEeccCcccc------------------------------------------
Confidence 369999999999999999999 9999999997542100
Q ss_pred ccccCHHHHHHHHHHHH-HhCCcEEE-EeEEEEEEEeCC--EEEEEeCC-------C--------cEEEeceEEecCCCC
Q 010693 166 YGRVSRNILKTKLLENC-VSNGVKFH-KAKVWHVNHQEF--ESSIVCDD-------G--------NEIKASLIVDASGFA 226 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~-~~~gv~~~-~~~v~~i~~~~~--~~~v~~~~-------g--------~~i~a~~vI~A~G~~ 226 (503)
.++ ..+.+.+.+.. .+.|++++ +++|.+++.+++ .+.+.+.+ + +++.+|.||.|+|..
T Consensus 350 --~~d-~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~ 426 (659)
T PTZ00153 350 --LLD-ADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRK 426 (659)
T ss_pred --cCC-HHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcc
Confidence 011 11233333333 35899999 999999987653 25554421 1 269999999999987
Q ss_pred ccc
Q 010693 227 SSF 229 (503)
Q Consensus 227 s~v 229 (503)
...
T Consensus 427 Pnt 429 (659)
T PTZ00153 427 PNT 429 (659)
T ss_pred cCC
Confidence 654
No 335
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.29 E-value=0.0013 Score=70.09 Aligned_cols=90 Identities=18% Similarity=0.212 Sum_probs=66.0
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
-+|+|||||+.|+-+|..|++ .|.+|+++|+.+... .
T Consensus 353 k~VvViGgG~~g~E~A~~L~~-~g~~Vtli~~~~~l~----------------------------------~-------- 389 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAG-IVRHVTVLEFADELK----------------------------------A-------- 389 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHh-cCcEEEEEEeCCcCC----------------------------------h--------
Confidence 489999999999999999999 999999998643110 0
Q ss_pred ccccCHHHHHHHHHHHHHh-CCcEEE-EeEEEEEEEeCCEEE-EEeCC---C--cEEEeceEEecCCCCc
Q 010693 166 YGRVSRNILKTKLLENCVS-NGVKFH-KAKVWHVNHQEFESS-IVCDD---G--NEIKASLIVDASGFAS 227 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~~~~~~-v~~~~---g--~~i~a~~vI~A~G~~s 227 (503)
.+.+.+.+.+ .|++++ ++.++++..+++.+. |.+.+ | +++.+|.||.|.|..+
T Consensus 390 ---------~~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~P 450 (515)
T TIGR03140 390 ---------DKVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVP 450 (515)
T ss_pred ---------hHHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcC
Confidence 0113333444 699999 899999987655443 55433 2 3699999999999765
No 336
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.29 E-value=0.00037 Score=76.29 Aligned_cols=36 Identities=36% Similarity=0.518 Sum_probs=33.1
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPL 120 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~ 120 (503)
...+|+|||||||||++|..|++ .|++|+|+|+.+.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~-~G~~Vtv~e~~~~ 344 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILAR-AGVQVDVFDRHPE 344 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH-cCCcEEEEeCCCC
Confidence 35789999999999999999999 9999999998764
No 337
>PLN02785 Protein HOTHEAD
Probab=97.26 E-value=0.00041 Score=74.72 Aligned_cols=36 Identities=31% Similarity=0.501 Sum_probs=32.6
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCC
Q 010693 83 RIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPL 120 (503)
Q Consensus 83 ~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~ 120 (503)
...||+||||||.||+.+|..|++ +.+|+|||+++.
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~--~~~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc--CCcEEEEecCCC
Confidence 446999999999999999999999 499999999963
No 338
>PRK10262 thioredoxin reductase; Provisional
Probab=97.26 E-value=0.0021 Score=64.21 Aligned_cols=94 Identities=16% Similarity=0.220 Sum_probs=68.1
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
-.|+|||+|..|+-+|..|++ .|.+|+++++.+... .
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~-~~~~Vtlv~~~~~~~----------------------------------~-------- 183 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSN-IASEVHLIHRRDGFR----------------------------------A-------- 183 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHh-hCCEEEEEEECCccC----------------------------------C--------
Confidence 479999999999999999999 999999999753100 0
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEE-EEEeCCC------cEEEeceEEecCCCCc
Q 010693 166 YGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFES-SIVCDDG------NEIKASLIVDASGFAS 227 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~-~v~~~~g------~~i~a~~vI~A~G~~s 227 (503)
...+.+.+.+.+++.|++++ ++.++++..+++.+ .|++.++ +++.+|.||.|.|..+
T Consensus 184 -----~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p 248 (321)
T PRK10262 184 -----EKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSP 248 (321)
T ss_pred -----CHHHHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCcc
Confidence 00122445555667899999 89999998665322 3443321 3699999999999765
No 339
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.19 E-value=0.00029 Score=75.46 Aligned_cols=33 Identities=36% Similarity=0.456 Sum_probs=30.9
Q ss_pred cEEEECCCHHHHHHHHHHHccCC-CcEEEEcCCCC
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHS-VKVCCVDPSPL 120 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G-~~V~viE~~~~ 120 (503)
|+||||||.||+.+|..|++ .| ++|+|||+++.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~-~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSE-DVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhcc-CCCCeEEEEecCCC
Confidence 89999999999999999999 88 79999999863
No 340
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=97.18 E-value=0.0021 Score=61.81 Aligned_cols=38 Identities=24% Similarity=0.544 Sum_probs=31.8
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHccCCC-cEEEEcCCC
Q 010693 82 DRIRYDVIIIGTGPAGLRLAEQVSSRHSV-KVCCVDPSP 119 (503)
Q Consensus 82 ~~~~~DvvIVGgGpaGl~~A~~La~~~G~-~V~viE~~~ 119 (503)
...++.|+|||||-+|+..|..+.++.|- +|.|+|...
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 44689999999999999999999884554 899999643
No 341
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.18 E-value=0.0038 Score=63.20 Aligned_cols=56 Identities=29% Similarity=0.257 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCC-cEEEeceEEecCCCCc
Q 010693 170 SRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDG-NEIKASLIVDASGFAS 227 (503)
Q Consensus 170 ~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g-~~i~a~~vI~A~G~~s 227 (503)
....+.+.|...+++.||+++ +++|+++ +++++.+.+.++ .+++||.||.|+|..|
T Consensus 84 ~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 84 KAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCCcc
Confidence 467889999999999999999 9999999 344577776543 4699999999999866
No 342
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.12 E-value=0.0038 Score=63.39 Aligned_cols=99 Identities=23% Similarity=0.288 Sum_probs=76.8
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCC
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDR 164 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (503)
.--|+++|+|..|+-+|..|.. .+.+|+++++.+.... +
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~-~~~~VT~V~~e~~~~~----------------------------------------~ 251 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVS-KAKSVTVVFPEPWLLP----------------------------------------R 251 (478)
T ss_pred CceEEEECchHHHHHHHHHHHh-cCceEEEEccCccchh----------------------------------------h
Confidence 3459999999999999999999 8999999996432100 0
Q ss_pred CccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeC--CEEEEEeCCCcEEEeceEEecCCCCcc
Q 010693 165 PYGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQE--FESSIVCDDGNEIKASLIVDASGFASS 228 (503)
Q Consensus 165 ~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~--~~~~v~~~~g~~i~a~~vI~A~G~~s~ 228 (503)
-+ -..+.+.+.+..+++|+++. ++.+.+++... ....|.+.||+++.||+||...|..+.
T Consensus 252 lf----~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~ 314 (478)
T KOG1336|consen 252 LF----GPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPN 314 (478)
T ss_pred hh----hHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccc
Confidence 00 12234555566678999999 99999998765 467889999999999999999998763
No 343
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.10 E-value=0.00052 Score=68.46 Aligned_cols=37 Identities=24% Similarity=0.295 Sum_probs=32.1
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcE--EEEcCCCCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKV--CCVDPSPLS 121 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V--~viE~~~~~ 121 (503)
...+|+|||||++||++|+.|++ .+-+| +|+|.+++.
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r-~~p~~~i~l~Ea~~Rv 48 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLAR-LGPDVTITLFEASPRV 48 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHh-cCCCceEEEEecCCcc
Confidence 45899999999999999999999 88665 569988775
No 344
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.08 E-value=0.0033 Score=66.05 Aligned_cols=93 Identities=19% Similarity=0.202 Sum_probs=64.2
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCC-cEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccC
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSV-KVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLD 163 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~-~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (503)
.-.|+|||||..|+-+|..|++ .|. +|+++++.+.... . .
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~-~G~~~Vtlv~~~~~~~~--------------~-----------------~------- 313 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKR-LGAESVTIVYRRGREEM--------------P-----------------A------- 313 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHH-cCCCeEEEeeecCcccC--------------C-----------------C-------
Confidence 3479999999999999999999 998 8999997432100 0 0
Q ss_pred CCccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCE---EEEEe-----------------CCCcEEEeceEEec
Q 010693 164 RPYGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFE---SSIVC-----------------DDGNEIKASLIVDA 222 (503)
Q Consensus 164 ~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~---~~v~~-----------------~~g~~i~a~~vI~A 222 (503)
. . ...+.+.+.||+++ ++.+.++..+++. +.+.. .++.++.+|.||.|
T Consensus 314 --~----~-----~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a 382 (457)
T PRK11749 314 --S----E-----EEVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKA 382 (457)
T ss_pred --C----H-----HHHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEEC
Confidence 0 0 01234557899999 8888888765542 33321 12236999999999
Q ss_pred CCCCc
Q 010693 223 SGFAS 227 (503)
Q Consensus 223 ~G~~s 227 (503)
.|...
T Consensus 383 ~G~~p 387 (457)
T PRK11749 383 IGQTP 387 (457)
T ss_pred ccCCC
Confidence 98755
No 345
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.06 E-value=0.005 Score=64.54 Aligned_cols=33 Identities=21% Similarity=0.362 Sum_probs=30.4
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
-.|+|||||..|+-+|..|++ .|.+|+++++.+
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~-~G~~Vtlv~~~~ 305 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALR-LGAEVHCLYRRT 305 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHH-cCCEEEEEeecC
Confidence 479999999999999999999 999999999753
No 346
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.94 E-value=0.00084 Score=67.46 Aligned_cols=131 Identities=14% Similarity=0.186 Sum_probs=68.7
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHccCC--CcEEEEcCCCCCCCCCcccchh--------HhhhhcCchhhhhhccCceE
Q 010693 82 DRIRYDVIIIGTGPAGLRLAEQVSSRHS--VKVCCVDPSPLSTWPNNYGVWV--------DEFEDIGLVDCLDKTWPMTC 151 (503)
Q Consensus 82 ~~~~~DvvIVGgGpaGl~~A~~La~~~G--~~V~viE~~~~~~~~~~~g~~~--------~~l~~~~~~~~~~~~~~~~~ 151 (503)
......|+|||||.++.-++..|.+ .+ .+|+++=|++.........+.. +.+..+.-+.-
T Consensus 187 ~~~~~~V~VVGgGQSAAEi~~~L~~-~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R--------- 256 (341)
T PF13434_consen 187 SLAGKRVAVVGGGQSAAEIFLDLLR-RGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDEER--------- 256 (341)
T ss_dssp ----EEEEEE-SSHHHHHHHHHHHH-H-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-HHHH---------
T ss_pred ccCCCeEEEECCcHhHHHHHHHHHh-CCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCHHHH---------
Confidence 3456889999999999999999998 66 4899998875422111111111 11111111000
Q ss_pred EEecCCcccccC-CCccccCHHHH---HHHHHHH-HHh-CCcEEE-EeEEEEEEEeC-CEEEEEeCC---C--cEEEece
Q 010693 152 VFINDHKTKYLD-RPYGRVSRNIL---KTKLLEN-CVS-NGVKFH-KAKVWHVNHQE-FESSIVCDD---G--NEIKASL 218 (503)
Q Consensus 152 ~~~~~~~~~~~~-~~~~~v~r~~l---~~~L~~~-~~~-~gv~~~-~~~v~~i~~~~-~~~~v~~~~---g--~~i~a~~ 218 (503)
........ ..|+.|+...+ .+.+.++ +.. ..++++ +++|++++..+ +++.+.+.+ | .++.+|.
T Consensus 257 ----~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~ 332 (341)
T PF13434_consen 257 ----RELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDA 332 (341)
T ss_dssp ----HHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESE
T ss_pred ----HHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCE
Confidence 00000111 13444554332 3333332 322 347888 89999999988 488888865 2 3799999
Q ss_pred EEecCCCC
Q 010693 219 IVDASGFA 226 (503)
Q Consensus 219 vI~A~G~~ 226 (503)
||.|||..
T Consensus 333 VilATGy~ 340 (341)
T PF13434_consen 333 VILATGYR 340 (341)
T ss_dssp EEE---EE
T ss_pred EEEcCCcc
Confidence 99999963
No 347
>PLN02976 amine oxidase
Probab=96.89 E-value=0.0013 Score=75.50 Aligned_cols=37 Identities=27% Similarity=0.515 Sum_probs=33.8
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLS 121 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~ 121 (503)
..+||+|||||++|+++|+.|++ .|++|+|||+.+..
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~-~G~~V~VlEa~~~v 728 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQR-QGFSVTVLEARSRI 728 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHH-CCCcEEEEeeccCC
Confidence 45899999999999999999999 99999999987554
No 348
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.89 E-value=0.0015 Score=69.64 Aligned_cols=96 Identities=23% Similarity=0.307 Sum_probs=73.1
Q ss_pred EEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCCcc
Q 010693 88 VIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRPYG 167 (503)
Q Consensus 88 vvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (503)
.+|||||.-|+-+|..|.. .|.+|.|++=.+ ..++. .
T Consensus 148 avVIGGGLLGlEaA~~L~~-~Gm~~~Vvh~~~-----------------~lMer-------------------Q------ 184 (793)
T COG1251 148 AVVIGGGLLGLEAARGLKD-LGMEVTVVHIAP-----------------TLMER-------------------Q------ 184 (793)
T ss_pred cEEEccchhhhHHHHHHHh-CCCceEEEeecc-----------------hHHHH-------------------h------
Confidence 6999999999999999999 999999998321 11110 0
Q ss_pred ccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCcc
Q 010693 168 RVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASS 228 (503)
Q Consensus 168 ~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~ 228 (503)
+++. -...|++...+.|++++ ++..+.+..++....+.+.||..+.||+||-|+|+...
T Consensus 185 -LD~~-ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn 244 (793)
T COG1251 185 -LDRT-AGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPN 244 (793)
T ss_pred -hhhH-HHHHHHHHHHhhcceeecccchhhhhcCcceeeEeecCCCcccceeEEEecccccc
Confidence 1111 12455666677999999 88888877766677889999999999999999998763
No 349
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.85 E-value=0.0056 Score=65.40 Aligned_cols=90 Identities=17% Similarity=0.202 Sum_probs=65.6
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
-+|+|||||..|+-+|..|+. .|.+|+|+++++....
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~-~~~~Vtlv~~~~~l~~------------------------------------------ 388 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAG-IVKHVTVLEFAPELKA------------------------------------------ 388 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHh-cCCEEEEEEECccccc------------------------------------------
Confidence 489999999999999999999 9999999986542100
Q ss_pred ccccCHHHHHHHHHHHHHh-CCcEEE-EeEEEEEEEeCCEEE-EEeC---CCc--EEEeceEEecCCCCc
Q 010693 166 YGRVSRNILKTKLLENCVS-NGVKFH-KAKVWHVNHQEFESS-IVCD---DGN--EIKASLIVDASGFAS 227 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~~~~~~-v~~~---~g~--~i~a~~vI~A~G~~s 227 (503)
...+.+.+.+ .|++++ ++.++++..+++.+. +.+. +|+ ++.+|.|+.|.|...
T Consensus 389 ---------~~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p 449 (517)
T PRK15317 389 ---------DQVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVP 449 (517)
T ss_pred ---------cHHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCcc
Confidence 0112223333 699999 899999987655432 4443 333 599999999999865
No 350
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.85 E-value=0.0083 Score=60.75 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=29.0
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCc-EEEEcCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVK-VCCVDPS 118 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~-V~viE~~ 118 (503)
-.|+|||+|+.|+-+|..|++ .|.+ |+|+++.
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~-~g~~~Vtvi~~~ 205 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVL-LGAEKVYLAYRR 205 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHH-cCCCeEEEEeec
Confidence 379999999999999999999 8997 9999864
No 351
>PRK12831 putative oxidoreductase; Provisional
Probab=96.77 E-value=0.011 Score=62.08 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=30.3
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
-.|+|||||..|+-+|..|++ .|.+|+++++..
T Consensus 282 k~VvVIGgG~va~d~A~~l~r-~Ga~Vtlv~r~~ 314 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALR-LGAEVHIVYRRS 314 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHH-cCCEEEEEeecC
Confidence 489999999999999999999 999999999653
No 352
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=96.76 E-value=0.0015 Score=71.96 Aligned_cols=50 Identities=34% Similarity=0.421 Sum_probs=42.8
Q ss_pred CCCCCCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccc
Q 010693 79 HPSDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGV 129 (503)
Q Consensus 79 ~~~~~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~ 129 (503)
+|....-..|+|||.|||||+||-+|-+ .|+.|+|+||....+..-.||.
T Consensus 1779 pp~~rtg~~vaiigsgpaglaaadqlnk-~gh~v~vyer~dr~ggll~ygi 1828 (2142)
T KOG0399|consen 1779 PPAFRTGKRVAIIGSGPAGLAAADQLNK-AGHTVTVYERSDRVGGLLMYGI 1828 (2142)
T ss_pred CcccccCcEEEEEccCchhhhHHHHHhh-cCcEEEEEEecCCcCceeeecC
Confidence 4566677899999999999999999999 9999999999987765555554
No 353
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.74 E-value=0.0014 Score=68.97 Aligned_cols=40 Identities=28% Similarity=0.360 Sum_probs=35.4
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCC
Q 010693 82 DRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLS 121 (503)
Q Consensus 82 ~~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~ 121 (503)
....||.||||||-||+.+|..|++...++|+|+|++...
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 4467999999999999999999999556999999998655
No 354
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.54 E-value=0.011 Score=68.11 Aligned_cols=89 Identities=11% Similarity=0.172 Sum_probs=65.5
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCC-cEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSV-KVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDR 164 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~-~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (503)
-.|+|||+|+.|+-+|..|++ .|. .|+|+|..+..
T Consensus 318 k~VvViG~G~~g~e~A~~L~~-~G~~vV~vv~~~~~~------------------------------------------- 353 (985)
T TIGR01372 318 KRIVVATNNDSAYRAAADLLA-AGIAVVAIIDARADV------------------------------------------- 353 (985)
T ss_pred CeEEEECCCHHHHHHHHHHHH-cCCceEEEEccCcch-------------------------------------------
Confidence 479999999999999999999 995 57899854310
Q ss_pred CccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeC----CCcEEEeceEEecCCCCcc
Q 010693 165 PYGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCD----DGNEIKASLIVDASGFASS 228 (503)
Q Consensus 165 ~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~----~g~~i~a~~vI~A~G~~s~ 228 (503)
...+.+.+++.||+++ ++.|+.+..++....|++. +++++.||.|+.+.|..+.
T Consensus 354 ----------~~~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pn 412 (985)
T TIGR01372 354 ----------SPEARAEARELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPV 412 (985)
T ss_pred ----------hHHHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCch
Confidence 0013345567899999 8899998765442233332 4457999999999997764
No 355
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=96.42 E-value=0.0034 Score=61.78 Aligned_cols=45 Identities=29% Similarity=0.435 Sum_probs=35.8
Q ss_pred cCcEEEECCCHHHHHHHHHHHc-cCCCcEEEEcCCCCCCCCCcccc
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSS-RHSVKVCCVDPSPLSTWPNNYGV 129 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~-~~G~~V~viE~~~~~~~~~~~g~ 129 (503)
...|.|||+||||..+|..|-+ ..+.+|.|+|+.|.+-....||.
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGV 65 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGV 65 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeecc
Confidence 4489999999999999998877 35799999999876644444554
No 356
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.38 E-value=0.018 Score=58.64 Aligned_cols=106 Identities=16% Similarity=0.272 Sum_probs=67.5
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCC--cEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCccccc
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSV--KVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYL 162 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~--~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (503)
.-.++|||||++|..|+..+.+ .|. +++++-+.......+. .|.. +.....
T Consensus 74 ar~fvivGgG~~g~vaie~~r~-~g~~~ri~l~~~~~~~pydr~------~Ls~---------------~~~~~~----- 126 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQ-VGFTERIALVKREYLLPYDRA------RLSK---------------FLLTVG----- 126 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHh-hCCCcceEEEeccccCcccch------hccc---------------ceeecc-----
Confidence 4569999999999999999999 774 5666643321111000 0000 000000
Q ss_pred CCCccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCcc
Q 010693 163 DRPYGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASS 228 (503)
Q Consensus 163 ~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~ 228 (503)
..+ .....+-.++.|++++ ++.|+.++.... +|.+.+|+++..+.+|+|+|.++.
T Consensus 127 -~~~--------a~r~~e~Yke~gIe~~~~t~v~~~D~~~K--~l~~~~Ge~~kys~LilATGs~~~ 182 (478)
T KOG1336|consen 127 -EGL--------AKRTPEFYKEKGIELILGTSVVKADLASK--TLVLGNGETLKYSKLIIATGSSAK 182 (478)
T ss_pred -ccc--------cccChhhHhhcCceEEEcceeEEeecccc--EEEeCCCceeecceEEEeecCccc
Confidence 011 0111111236799999 999999998765 578889999999999999999554
No 357
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=96.31 E-value=0.011 Score=58.95 Aligned_cols=101 Identities=26% Similarity=0.330 Sum_probs=73.4
Q ss_pred CcEEEECCCHHHHHHHHHHHcc---CCCcEE-EEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccc
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSR---HSVKVC-CVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKY 161 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~---~G~~V~-viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (503)
-.|-|||.|.-|.-+|+.|++. .|..|. ||| ..
T Consensus 348 ~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~---------------------------------------Ek---- 384 (659)
T KOG1346|consen 348 QSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFE---------------------------------------EK---- 384 (659)
T ss_pred ceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeec---------------------------------------cc----
Confidence 4699999999999999999981 122221 111 00
Q ss_pred cCCCccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCC--Cccccc
Q 010693 162 LDRPYGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGF--ASSFVE 231 (503)
Q Consensus 162 ~~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~--~s~vr~ 231 (503)
.+...|-..-+.++-.++++..||.++ ++.|.++......+.+.+.||.+++.|+||.|.|- ++-+.+
T Consensus 385 --~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~ 455 (659)
T KOG1346|consen 385 --YNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAE 455 (659)
T ss_pred --CChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhcc
Confidence 011112233356667777888999999 99999999888889999999999999999999994 444443
No 358
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.30 E-value=0.031 Score=59.00 Aligned_cols=102 Identities=17% Similarity=0.212 Sum_probs=62.4
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCC-cEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSV-KVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDR 164 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~-~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (503)
-.|+|||||..|+-+|..+.+ .|. +|++++..+..... . +... ...
T Consensus 282 k~VvVIGgG~~g~e~A~~~~~-~ga~~Vt~~~~~~~~~~~-----------~-----------------~~~~----~~~ 328 (471)
T PRK12810 282 KHVVVIGGGDTGMDCVGTAIR-QGAKSVTQRDIMPMPPSR-----------R-----------------NKNN----PWP 328 (471)
T ss_pred CEEEEECCcHHHHHHHHHHHH-cCCCeEEEccccCCCccc-----------c-----------------cccc----CCc
Confidence 369999999999999998888 786 78877643211000 0 0000 000
Q ss_pred CccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEE-EE-----eCCC---------cEEEeceEEecCCCCc
Q 010693 165 PYGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESS-IV-----CDDG---------NEIKASLIVDASGFAS 227 (503)
Q Consensus 165 ~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~-v~-----~~~g---------~~i~a~~vI~A~G~~s 227 (503)
.+. .....+.+.+.|++++ ++.++++..+++.+. |. ..+| .++.+|.||.|.|...
T Consensus 329 ~~~-------~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p 400 (471)
T PRK12810 329 YWP-------MKLEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTG 400 (471)
T ss_pred ccc-------hHHHHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCC
Confidence 000 0112344567899999 888988875455432 22 2222 3699999999999654
No 359
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=96.24 E-value=0.0087 Score=56.08 Aligned_cols=32 Identities=31% Similarity=0.517 Sum_probs=26.9
Q ss_pred EEEECCCHHHHHHHHHHHc-cCCCcEEEEcCCC
Q 010693 88 VIIIGTGPAGLRLAEQVSS-RHSVKVCCVDPSP 119 (503)
Q Consensus 88 vvIVGgGpaGl~~A~~La~-~~G~~V~viE~~~ 119 (503)
.+|||||+||.+||-.|+. ....+|+++-..+
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass 34 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASS 34 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccH
Confidence 5899999999999999998 3456888887554
No 360
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.23 E-value=0.037 Score=59.63 Aligned_cols=33 Identities=30% Similarity=0.362 Sum_probs=30.5
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
-.|+|||||+.|+-+|..|++ .|.+|+++++.+
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~-~g~~Vtli~~~~ 176 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTR-YASKVTVIVREP 176 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHc-cCCEEEEEEeCC
Confidence 479999999999999999999 999999999754
No 361
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=96.19 E-value=0.15 Score=52.40 Aligned_cols=49 Identities=14% Similarity=0.193 Sum_probs=40.2
Q ss_pred HHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCccc
Q 010693 181 NCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSF 229 (503)
Q Consensus 181 ~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~v 229 (503)
.+...|.+++ +++|+.|+.+++++.|.+.+|++++||.||.|.......
T Consensus 218 ~~~~~g~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~ 267 (450)
T PF01593_consen 218 AAEELGGEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSVLK 267 (450)
T ss_dssp HHHHHGGGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHHHH
T ss_pred HHhhcCceeecCCcceeccccccccccccccceEEecceeeecCchhhhh
Confidence 3344577899 999999999999999999999999999999999865533
No 362
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.13 E-value=0.034 Score=62.25 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCc-EEEEcCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVK-VCCVDPSP 119 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~-V~viE~~~ 119 (503)
-.|+|||||..|+-+|..+.+ .|.+ |+++++.+
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r-~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKR-LGAERVTIVYRRS 604 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHH-cCCCeEEEeeecC
Confidence 479999999999999999999 9987 99999754
No 363
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=96.01 E-value=0.03 Score=55.44 Aligned_cols=99 Identities=19% Similarity=0.271 Sum_probs=72.4
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
-..+|||||..||-.+---.+ .|-+|+++|--+ +++ . ..+
T Consensus 212 k~~~viG~G~IGLE~gsV~~r-LGseVT~VEf~~----------------~i~------------------~---~mD-- 251 (506)
T KOG1335|consen 212 KKLTVIGAGYIGLEMGSVWSR-LGSEVTVVEFLD----------------QIG------------------G---VMD-- 251 (506)
T ss_pred ceEEEEcCceeeeehhhHHHh-cCCeEEEEEehh----------------hhc------------------c---ccC--
Confidence 468999999999999999999 999999999322 111 0 000
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCC-EEEEEeCC---C--cEEEeceEEecCCCCcccc
Q 010693 166 YGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEF-ESSIVCDD---G--NEIKASLIVDASGFASSFV 230 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~-~~~v~~~~---g--~~i~a~~vI~A~G~~s~vr 230 (503)
..+.+...+.+...|++|. +++|+..+.+++ .+.|.+.+ + ++++||++..|.|+.....
T Consensus 252 ------~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~ 317 (506)
T KOG1335|consen 252 ------GEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTE 317 (506)
T ss_pred ------HHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCccccc
Confidence 1123333444455899999 999999999877 67776654 2 3799999999999877543
No 364
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=95.99 E-value=0.62 Score=47.96 Aligned_cols=56 Identities=13% Similarity=0.070 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEe-CCCcEEEeceEEecCCCCc
Q 010693 172 NILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVC-DDGNEIKASLIVDASGFAS 227 (503)
Q Consensus 172 ~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~-~~g~~i~a~~vI~A~G~~s 227 (503)
..+.+.|.+.+++.|++++ +++|++|+.+++++.+.+ .+|+++.||.||.|.....
T Consensus 197 ~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~~ 254 (419)
T TIGR03467 197 ELFPEPARRWLDSRGGEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPRH 254 (419)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHHH
Confidence 3344557777777899999 999999999888765544 4677899999999976543
No 365
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.79 E-value=0.07 Score=58.64 Aligned_cols=33 Identities=18% Similarity=0.251 Sum_probs=29.3
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCC-cEEEEcCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSV-KVCCVDPSP 119 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~-~V~viE~~~ 119 (503)
-.|+|||||..|+-+|..+.+ .|. +|+|+++.+
T Consensus 324 k~VvVIGgG~~a~e~A~~l~~-~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 324 KKVVVIGGGNTAIDAARTALR-LGAESVTILYRRT 357 (652)
T ss_pred CeEEEECCCHHHHHHHHHHHH-cCCCeEEEeeecC
Confidence 479999999999999999999 896 699998654
No 366
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=95.62 E-value=0.26 Score=51.11 Aligned_cols=36 Identities=17% Similarity=0.203 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHHcc---CCCcEEEEcCCCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSR---HSVKVCCVDPSPLS 121 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~---~G~~V~viE~~~~~ 121 (503)
.+.=|||+|+|+|++|..|-|. .|-+|+|+|..+..
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~ 41 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVP 41 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCC
Confidence 4567999999999999999982 35699999987654
No 367
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=95.62 E-value=0.093 Score=55.28 Aligned_cols=34 Identities=15% Similarity=0.293 Sum_probs=29.8
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCC-cEEEEcCCC
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSV-KVCCVDPSP 119 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~-~V~viE~~~ 119 (503)
.-.|+|||+|..|+-+|..+.+ .|. +|+|+++.+
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~-~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIR-LGAASVTCAYRRD 316 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHH-cCCCeEEEEEecC
Confidence 3579999999999999999998 895 799999754
No 368
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=95.53 E-value=0.084 Score=60.25 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=30.1
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
-+|+|||||..|+=+|..+.+ .|.+|+++.+++
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R-~Ga~Vtlv~rr~ 480 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKR-LGGNVTIVYRRT 480 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHH-cCCEEEEEEecC
Confidence 479999999999999999999 999999998753
No 369
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=95.38 E-value=0.018 Score=59.47 Aligned_cols=37 Identities=38% Similarity=0.457 Sum_probs=29.4
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLS 121 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~ 121 (503)
.+|||||+|.|+.-+.+|.+|++ .|.+|+.+|+++--
T Consensus 3 ~~yDviI~GTGl~esila~als~-~GkkVLhiD~n~yY 39 (438)
T PF00996_consen 3 EEYDVIILGTGLTESILAAALSR-SGKKVLHIDRNDYY 39 (438)
T ss_dssp SBESEEEE--SHHHHHHHHHHHH-TT--EEEE-SSSSS
T ss_pred ccceEEEECCCcHHHHHHHHHHh-cCCEEEecCCCCCc
Confidence 57999999999999999999999 99999999998654
No 370
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=95.33 E-value=0.035 Score=58.23 Aligned_cols=33 Identities=15% Similarity=0.271 Sum_probs=30.4
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
-+|+|||+|.+|+=.|..|++ .+.+|+++.|..
T Consensus 205 k~VvVVG~G~Sg~diA~~L~~-~a~~V~l~~r~~ 237 (461)
T PLN02172 205 EVVVVIGNFASGADISRDIAK-VAKEVHIASRAS 237 (461)
T ss_pred CEEEEECCCcCHHHHHHHHHH-hCCeEEEEEeec
Confidence 469999999999999999999 999999999754
No 371
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=95.17 E-value=0.075 Score=53.50 Aligned_cols=52 Identities=25% Similarity=0.262 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCc--EEEeceEEecCCCCc
Q 010693 174 LKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGN--EIKASLIVDASGFAS 227 (503)
Q Consensus 174 l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~--~i~a~~vI~A~G~~s 227 (503)
+.+...++..+.|+++. ++.|.++.. ..+.+.+.||+ +|..-++|.|+|...
T Consensus 275 l~~yae~~f~~~~I~~~~~t~Vk~V~~--~~I~~~~~~g~~~~iPYG~lVWatG~~~ 329 (491)
T KOG2495|consen 275 LVEYAENQFVRDGIDLDTGTMVKKVTE--KTIHAKTKDGEIEEIPYGLLVWATGNGP 329 (491)
T ss_pred HHHHHHHHhhhccceeecccEEEeecC--cEEEEEcCCCceeeecceEEEecCCCCC
Confidence 44444455566899999 889988874 35666677775 699999999999765
No 372
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.16 E-value=0.15 Score=56.10 Aligned_cols=33 Identities=18% Similarity=0.441 Sum_probs=28.7
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCC-cEEEEcCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSV-KVCCVDPSP 119 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~-~V~viE~~~ 119 (503)
-.|+|||||..|+-+|..+.+ .|. +|+++.+.+
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r-~ga~~Vt~i~~~~ 502 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALR-HGASNVTCAYRRD 502 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHH-cCCCeEEEeEecC
Confidence 479999999999999998888 886 699998653
No 373
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.11 E-value=0.023 Score=51.62 Aligned_cols=32 Identities=31% Similarity=0.470 Sum_probs=27.7
Q ss_pred cEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
.|.|||+|..|...|..++. .|++|+++|+++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~-~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFAR-AGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHH-TTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHh-CCCcEEEEECCh
Confidence 38999999999999999999 999999999754
No 374
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=95.09 E-value=0.14 Score=58.21 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=28.5
Q ss_pred CcEEEECCCHHHHHHHHHHHccC-C-CcEEEEcCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRH-S-VKVCCVDPSP 119 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~-G-~~V~viE~~~ 119 (503)
-.|+|||||..|+-+|..+.+ . | .+|+++.|++
T Consensus 669 KrVVVIGGGnVAmD~Ar~a~R-lgGakeVTLVyRr~ 703 (1019)
T PRK09853 669 KHVVVVGGGNTAMDAARAALR-VPGVEKVTVVYRRT 703 (1019)
T ss_pred CEEEEECCChHHHHHHHHHHh-cCCCceEEEEEccC
Confidence 479999999999999998887 6 5 4899999764
No 375
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.95 E-value=0.031 Score=49.45 Aligned_cols=32 Identities=22% Similarity=0.323 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
.|.|+|||..|.++|..|++ +|.+|.++.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~-~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLAD-NGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHH-CTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHH-cCCEEEEEeccH
Confidence 38999999999999999999 999999999764
No 376
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.68 E-value=0.037 Score=52.12 Aligned_cols=33 Identities=30% Similarity=0.495 Sum_probs=31.0
Q ss_pred cEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCC
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPL 120 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~ 120 (503)
+++|||+|..|..+|..|++ .|++|+++|+++.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~-~g~~Vv~Id~d~~ 34 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSE-EGHNVVLIDRDEE 34 (225)
T ss_pred EEEEECCcHHHHHHHHHHHh-CCCceEEEEcCHH
Confidence 68999999999999999999 9999999998754
No 377
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.59 E-value=0.039 Score=58.06 Aligned_cols=33 Identities=21% Similarity=0.301 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCC
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPL 120 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~ 120 (503)
.|+|||.|++|+++|..|++ +|++|+++|+.+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~-~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKA-QGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHH-CCCEEEEECCCCc
Confidence 48999999999999999999 9999999997654
No 378
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.44 E-value=0.056 Score=57.21 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=30.5
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
-.|+|||+|++|+.+|..|++ +|++|+++|+.+
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~-~G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLE-LGARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCc
Confidence 479999999999999999999 999999999754
No 379
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.43 E-value=0.37 Score=52.16 Aligned_cols=59 Identities=20% Similarity=0.229 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHhCCcEEE-EeEEEEEEEe-CCEEE-EE---eCCCc--EEEeceEEecCCCCccc
Q 010693 171 RNILKTKLLENCVSNGVKFH-KAKVWHVNHQ-EFESS-IV---CDDGN--EIKASLIVDASGFASSF 229 (503)
Q Consensus 171 r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~-~~~~~-v~---~~~g~--~i~a~~vI~A~G~~s~v 229 (503)
-..+...|.+.+.+.|++++ ++.++++..+ ++.+. |. ..+|+ .+.|+.||.|+|..+.+
T Consensus 125 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 191 (570)
T PRK05675 125 GHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGRI 191 (570)
T ss_pred HHHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcccc
Confidence 36788899998888999999 8999999875 44332 22 23554 58999999999977654
No 380
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=94.38 E-value=0.12 Score=55.05 Aligned_cols=40 Identities=23% Similarity=0.300 Sum_probs=29.2
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCc
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNN 126 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~ 126 (503)
-+|+|||+|.+|.=.|..|++ ..-+|.+.=|++.-..++.
T Consensus 184 KrVlVVG~g~Sg~DIa~el~~-~a~~v~~s~R~~~wv~pr~ 223 (531)
T PF00743_consen 184 KRVLVVGGGNSGADIAVELSR-VAKKVYLSTRRGAWVLPRY 223 (531)
T ss_dssp SEEEEESSSHHHHHHHHHHTT-TSCCEEEECC---------
T ss_pred CEEEEEeCCHhHHHHHHHHHH-hcCCeEEEEeccccccccc
Confidence 469999999999999999999 8999999988765444443
No 381
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=94.36 E-value=0.31 Score=55.56 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=29.0
Q ss_pred cCcEEEECCCHHHHHHHHHHHccC-CC-cEEEEcCCC
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRH-SV-KVCCVDPSP 119 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~-G~-~V~viE~~~ 119 (503)
.-.|+|||||..|+-+|..+.+ . |. +|++++++.
T Consensus 666 GK~VVVIGGGnvAmD~Ar~a~R-l~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 666 GKHVVVVGGGNTAMDAARAALR-VPGVEKVTVVYRRT 701 (1012)
T ss_pred CCeEEEECCCHHHHHHHHHHHH-hCCCceEEEEEccC
Confidence 3479999999999999998887 5 85 799999754
No 382
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=94.31 E-value=0.36 Score=48.82 Aligned_cols=116 Identities=16% Similarity=0.205 Sum_probs=76.4
Q ss_pred CCCCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCccc
Q 010693 81 SDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTK 160 (503)
Q Consensus 81 ~~~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (503)
.....-.|||+|.|-+|.+++-.|-. .-|+|+|+.++. +=.. -++
T Consensus 51 ~~~kKk~vVVLGsGW~a~S~lk~ldt-s~YdV~vVSPRn-------yFlF---------TPL------------------ 95 (491)
T KOG2495|consen 51 NGGKKKRVVVLGSGWGAISLLKKLDT-SLYDVTVVSPRN-------YFLF---------TPL------------------ 95 (491)
T ss_pred CCCCCceEEEEcCchHHHHHHHhccc-cccceEEecccc-------ceEE---------eec------------------
Confidence 34456789999999999999888888 889999998532 1000 000
Q ss_pred ccCCCccccCHHHHHHHHHHHHHh-C-CcEEEEeEEEEEEEeCCEEEEE--eCCC----cEEEeceEEecCCCCccccc
Q 010693 161 YLDRPYGRVSRNILKTKLLENCVS-N-GVKFHKAKVWHVNHQEFESSIV--CDDG----NEIKASLIVDASGFASSFVE 231 (503)
Q Consensus 161 ~~~~~~~~v~r~~l~~~L~~~~~~-~-gv~~~~~~v~~i~~~~~~~~v~--~~~g----~~i~a~~vI~A~G~~s~vr~ 231 (503)
....+.|.|+-+.+.+=++..+.. + ++++++++..+++.+...+.+. +.++ ..+..|++|.|.|+.+..-.
T Consensus 96 LpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eAec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFg 174 (491)
T KOG2495|consen 96 LPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEAECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFG 174 (491)
T ss_pred cCCccccceeehhhhhhHHHHhhccCCCceEEecccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCC
Confidence 111233345444444444444433 3 5677788888888887765554 3444 36999999999999876533
No 383
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=94.07 E-value=0.29 Score=50.14 Aligned_cols=106 Identities=19% Similarity=0.270 Sum_probs=64.0
Q ss_pred EEEECCCHHHHHHHHHHHc-cCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCCc
Q 010693 88 VIIIGTGPAGLRLAEQVSS-RHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRPY 166 (503)
Q Consensus 88 vvIVGgGpaGl~~A~~La~-~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (503)
++|||+|++|+++|..|.+ ..+.+++++.+.+...+.. ++.+... . .... ......
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~-~~~~~~~--~-------------------~~~~-~~~~~~ 57 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYR-CPLSLYV--G-------------------GGIA-SLEDLR 57 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCC-CccchHH--h-------------------cccC-CHHHhc
Confidence 5899999999999998887 2346788777654332211 1111100 0 0000 000000
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCccc
Q 010693 167 GRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSF 229 (503)
Q Consensus 167 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~v 229 (503)
.... .. ...+++++ .++|..++.... .|.+.+| ++..|.+|.|+|.....
T Consensus 58 --~~~~-------~~-~~~~i~~~~~~~v~~id~~~~--~v~~~~g-~~~yd~LvlatGa~~~~ 108 (415)
T COG0446 58 --YPPR-------FN-RATGIDVRTGTEVTSIDPENK--VVLLDDG-EIEYDYLVLATGARPRP 108 (415)
T ss_pred --ccch-------hH-HhhCCEEeeCCEEEEecCCCC--EEEECCC-cccccEEEEcCCCcccC
Confidence 0000 11 34678888 899999987655 4556666 89999999999987754
No 384
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=94.06 E-value=0.044 Score=49.94 Aligned_cols=32 Identities=31% Similarity=0.460 Sum_probs=26.3
Q ss_pred cEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
.|.|||.|-.||.+|..||+ .|++|+.+|.++
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~-~G~~V~g~D~~~ 33 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAE-KGHQVIGVDIDE 33 (185)
T ss_dssp EEEEE--STTHHHHHHHHHH-TTSEEEEE-S-H
T ss_pred EEEEECCCcchHHHHHHHHh-CCCEEEEEeCCh
Confidence 58999999999999999999 999999999653
No 385
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=93.98 E-value=0.076 Score=46.42 Aligned_cols=30 Identities=30% Similarity=0.459 Sum_probs=28.4
Q ss_pred EEEECCCHHHHHHHHHHHccCCCcEEEEcCC
Q 010693 88 VIIIGTGPAGLRLAEQVSSRHSVKVCCVDPS 118 (503)
Q Consensus 88 vvIVGgGpaGl~~A~~La~~~G~~V~viE~~ 118 (503)
|+|+|+|-.|+..|..|++ .|.+|.++.|.
T Consensus 1 I~I~G~GaiG~~~a~~L~~-~g~~V~l~~r~ 30 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ-AGHDVTLVSRS 30 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH-TTCEEEEEESH
T ss_pred CEEECcCHHHHHHHHHHHH-CCCceEEEEcc
Confidence 6899999999999999999 99999999964
No 386
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.83 E-value=0.065 Score=53.16 Aligned_cols=32 Identities=31% Similarity=0.346 Sum_probs=30.2
Q ss_pred cEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
+|.|||+|..|...|..|++ +|++|+++|+.+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~-~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFAR-AGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHH-CCCeeEEEeCCH
Confidence 69999999999999999999 999999999864
No 387
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=93.68 E-value=0.62 Score=50.36 Aligned_cols=112 Identities=21% Similarity=0.268 Sum_probs=72.1
Q ss_pred cCcEEEECCCHHHHHHHHHHHc--cCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCccccc
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSS--RHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYL 162 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~--~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (503)
...++|||-|.||-.+.-.+.+ ..-++|+|+=..|...+.+- -+.+.+ ....+ .
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri-----------~Ls~vl-----------~~~~~--~ 58 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRI-----------LLSSVL-----------AGEKT--A 58 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccce-----------eecccc-----------CCCcc--H
Confidence 4579999999999999888877 12378888865443322111 111111 11000 0
Q ss_pred CCCccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCccccc
Q 010693 163 DRPYGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSFVE 231 (503)
Q Consensus 163 ~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~vr~ 231 (503)
.--.+++.. -.+++|++++ +.+|+.++.++. .|++++|.++..|-+|.|+|....+..
T Consensus 59 --edi~l~~~d-------wy~~~~i~L~~~~~v~~idr~~k--~V~t~~g~~~~YDkLilATGS~pfi~P 117 (793)
T COG1251 59 --EDISLNRND-------WYEENGITLYTGEKVIQIDRANK--VVTTDAGRTVSYDKLIIATGSYPFILP 117 (793)
T ss_pred --HHHhccchh-------hHHHcCcEEEcCCeeEEeccCcc--eEEccCCcEeecceeEEecCccccccC
Confidence 000122222 2346899999 999999987654 567788999999999999999886654
No 388
>PLN02852 ferredoxin-NADP+ reductase
Probab=93.60 E-value=0.52 Score=49.70 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=20.0
Q ss_pred CcEEEECCCHHHHHHHHHHHccC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRH 108 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~ 108 (503)
-.|+|||+|..|+-+|..|.+ .
T Consensus 167 k~VvVIGgGnvAlD~Ar~L~~-~ 188 (491)
T PLN02852 167 DTAVVLGQGNVALDCARILLR-P 188 (491)
T ss_pred CEEEEECCCHHHHHHHHHHHh-C
Confidence 479999999999999999887 6
No 389
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=93.40 E-value=0.081 Score=45.52 Aligned_cols=32 Identities=31% Similarity=0.513 Sum_probs=28.0
Q ss_pred EEEECCCHHHHHHHHHHHccCCCcEEEEcCCCC
Q 010693 88 VIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPL 120 (503)
Q Consensus 88 vvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~ 120 (503)
++|+|+|+.+.++|..++. .|++|+|+|.+++
T Consensus 1 L~I~GaG~va~al~~la~~-lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAAL-LGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHH-CTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHh-CCCEEEEEcCCcc
Confidence 5899999999999999999 9999999998754
No 390
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=93.31 E-value=0.34 Score=48.66 Aligned_cols=132 Identities=19% Similarity=0.227 Sum_probs=81.9
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHc-cCCCcEEEEcCCCCCCCCCc---ccchhHhhhhcCchhhhhhccCc--eEEEec
Q 010693 82 DRIRYDVIIIGTGPAGLRLAEQVSS-RHSVKVCCVDPSPLSTWPNN---YGVWVDEFEDIGLVDCLDKTWPM--TCVFIN 155 (503)
Q Consensus 82 ~~~~~DvvIVGgGpaGl~~A~~La~-~~G~~V~viE~~~~~~~~~~---~g~~~~~l~~~~~~~~~~~~~~~--~~~~~~ 155 (503)
...+...+|||+|.+..+++.+... +.+.+|.+|--.++..+.+. -..|-.. +......+--..|.+ ..++|
T Consensus 175 ~p~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~-dpn~~k~lrfkqwsGkeRsiff- 252 (659)
T KOG1346|consen 175 LPKHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYG-DPNSAKKLRFKQWSGKERSIFF- 252 (659)
T ss_pred CcccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecC-CCChhhheeecccCCccceeEe-
Confidence 3456889999999988887776654 46789999987666554332 1222111 000001111112332 11211
Q ss_pred CCcccccCCCccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCCCccc
Q 010693 156 DHKTKYLDRPYGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSF 229 (503)
Q Consensus 156 ~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~~s~v 229 (503)
..+-.+|+..+|.... .-||-+. +.+|.+++.++. .|+++||.+|..|-.++|+|...+-
T Consensus 253 -------epd~FfvspeDLp~~~-----nGGvAvl~G~kvvkid~~d~--~V~LnDG~~I~YdkcLIATG~~Pk~ 313 (659)
T KOG1346|consen 253 -------EPDGFFVSPEDLPKAV-----NGGVAVLRGRKVVKIDEEDK--KVILNDGTTIGYDKCLIATGVRPKK 313 (659)
T ss_pred -------cCCcceeChhHCcccc-----cCceEEEeccceEEeecccC--eEEecCCcEeehhheeeecCcCccc
Confidence 1222247777776543 5678888 889999987665 4678899999999999999987653
No 391
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.15 E-value=0.12 Score=54.09 Aligned_cols=34 Identities=29% Similarity=0.455 Sum_probs=31.1
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
.-.|+|+|+|.+|+.+|..|++ .|++|+++|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~-~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKK-LGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCc
Confidence 4569999999999999999999 999999999754
No 392
>PLN02976 amine oxidase
Probab=93.12 E-value=24 Score=42.13 Aligned_cols=38 Identities=13% Similarity=0.174 Sum_probs=32.0
Q ss_pred cEEE-EeEEEEEEEe----------CCEEEEEeCCCcEEEeceEEecCC
Q 010693 187 VKFH-KAKVWHVNHQ----------EFESSIVCDDGNEIKASLIVDASG 224 (503)
Q Consensus 187 v~~~-~~~v~~i~~~----------~~~~~v~~~~g~~i~a~~vI~A~G 224 (503)
..|+ ++.|+.|... ++++.|.+.+|+++.||.||.+.-
T Consensus 946 L~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTVP 994 (1713)
T PLN02976 946 LDIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITVP 994 (1713)
T ss_pred CCeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeCC
Confidence 3477 9999999884 357889999998999999999974
No 393
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=93.07 E-value=0.43 Score=49.61 Aligned_cols=47 Identities=11% Similarity=0.196 Sum_probs=36.9
Q ss_pred HhCCcEEE-EeEEEEEEEeCCEEEEEeCC-CcEEE--eceEEecCCCCccc
Q 010693 183 VSNGVKFH-KAKVWHVNHQEFESSIVCDD-GNEIK--ASLIVDASGFASSF 229 (503)
Q Consensus 183 ~~~gv~~~-~~~v~~i~~~~~~~~v~~~~-g~~i~--a~~vI~A~G~~s~v 229 (503)
.+.|++++ +++|++++.++..+.+...+ ++++. +|.||.|+|.....
T Consensus 55 ~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p~~ 105 (427)
T TIGR03385 55 KKRGIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPIV 105 (427)
T ss_pred HhcCCeEEecCEEEEEECCCCEEEEEECCCCCEEecCCCEEEECCCCCCCC
Confidence 45799998 89999998877777666543 45677 99999999986643
No 394
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.96 E-value=0.13 Score=50.44 Aligned_cols=33 Identities=30% Similarity=0.361 Sum_probs=30.5
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
..|.|||+|..|...|..|++ +|++|+++|+++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~-~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAF-HGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHh-cCCeEEEEeCCH
Confidence 469999999999999999999 999999999764
No 395
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.78 E-value=0.13 Score=51.20 Aligned_cols=33 Identities=27% Similarity=0.476 Sum_probs=30.6
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
-.|.|||+|..|...|..++. .|++|+++|+.+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~-aG~~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALA-HGLDVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHh-CCCeEEEEeCCH
Confidence 359999999999999999999 999999999765
No 396
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.72 E-value=0.76 Score=50.49 Aligned_cols=34 Identities=15% Similarity=0.259 Sum_probs=28.9
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCC-cEEEEcCCC
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSV-KVCCVDPSP 119 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~-~V~viE~~~ 119 (503)
.-.|+|||+|..|+-+|..+.+ .|. +|+++++++
T Consensus 451 gk~vvViGgG~~a~d~a~~~~~-~Ga~~Vt~v~rr~ 485 (639)
T PRK12809 451 GKRVVVLGGGDTTMDCLRTSIR-LNAASVTCAYRRD 485 (639)
T ss_pred CCeEEEECCcHHHHHHHHHHHH-cCCCeEEEeeecC
Confidence 3579999999999999998888 885 799998754
No 397
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=92.62 E-value=0.17 Score=50.33 Aligned_cols=33 Identities=24% Similarity=0.199 Sum_probs=30.5
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
..|+|||+|..|.+.|..|++ .|.+|+++.|++
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~-~g~~V~~~~r~~ 38 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLAR-AGFDVHFLLRSD 38 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHH-CCCeEEEEEeCC
Confidence 469999999999999999999 999999999753
No 398
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=92.55 E-value=0.18 Score=44.55 Aligned_cols=31 Identities=29% Similarity=0.338 Sum_probs=28.8
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEc
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVD 116 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE 116 (503)
.-.|+|||||..|..-|..|.+ .|.+|+||.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~-~ga~V~VIs 43 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKD-TGAFVTVVS 43 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-CCCEEEEEc
Confidence 4569999999999999999999 999999996
No 399
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=92.55 E-value=0.8 Score=52.87 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=28.0
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCc-EEEEcCC
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVK-VCCVDPS 118 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~-V~viE~~ 118 (503)
.-+|+|||||..|+=+|..+.+ .|.+ |+++.+.
T Consensus 571 Gk~VvVIGgG~tA~D~A~~a~r-lGa~~Vtiv~rr 604 (1006)
T PRK12775 571 GKSVVVIGAGNTAMDCLRVAKR-LGAPTVRCVYRR 604 (1006)
T ss_pred CCEEEEECCcHHHHHHHHHHHH-cCCCEEEEEeec
Confidence 3579999999999999999999 9974 7777754
No 400
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.55 E-value=0.15 Score=42.30 Aligned_cols=31 Identities=39% Similarity=0.683 Sum_probs=28.2
Q ss_pred EEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 88 VIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 88 vvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
|+|||.|..|..+|..|.+ .+.+|+++|+++
T Consensus 1 vvI~G~g~~~~~i~~~L~~-~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE-GGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH-TTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHh-CCCEEEEEECCc
Confidence 6999999999999999999 899999999875
No 401
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.53 E-value=0.13 Score=50.34 Aligned_cols=32 Identities=19% Similarity=0.342 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
.|.|||+|..|...|..|++ +|++|+++|+++
T Consensus 3 ~V~VIG~G~mG~~iA~~la~-~G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAV-SGFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHh-CCCcEEEEeCCH
Confidence 48999999999999999999 999999999764
No 402
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.42 E-value=0.16 Score=49.69 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=30.7
Q ss_pred cEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCC
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPL 120 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~ 120 (503)
.|.|||+|.-|...|..+++ .|++|+++|+.+.
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~-~G~~V~l~d~~~~ 39 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCAR-AGVDVLVFETTEE 39 (286)
T ss_pred EEEEEcccHHHHHHHHHHHh-CCCEEEEEECCHH
Confidence 69999999999999999999 9999999998653
No 403
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=92.41 E-value=0.17 Score=50.08 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=30.5
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
.+|+|+|+|..|...|..|++ .|.+|+++.|..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~-~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLAR-AGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHh-CCCCeEEEEech
Confidence 469999999999999999999 999999999853
No 404
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=92.33 E-value=0.21 Score=46.35 Aligned_cols=32 Identities=19% Similarity=0.347 Sum_probs=29.6
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPS 118 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~ 118 (503)
-.|+|||||.+|..-+..|.+ .|.+|+|+++.
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~-~ga~VtVvsp~ 41 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLK-AGAQLRVIAEE 41 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHH-CCCEEEEEcCC
Confidence 379999999999999999999 99999999854
No 405
>PRK13984 putative oxidoreductase; Provisional
Probab=92.29 E-value=0.8 Score=50.00 Aligned_cols=35 Identities=17% Similarity=-0.064 Sum_probs=28.5
Q ss_pred CCCEEEeccCCCCcCCcccHHHHHHHHhHHHHHHHHHHHhc
Q 010693 351 PQSVMAIGSTSGLVHPSTGYMVARTMALAPALADAIAECLG 391 (503)
Q Consensus 351 ~~~v~liGDAa~~~~P~~G~G~~~al~~a~~lA~~l~~~l~ 391 (503)
.++|+.+||+++. ..+..|+.+|..+|..|.+.+.
T Consensus 568 ~~gVfAaGD~~~~------~~~v~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 568 IPWLFAGGDIVHG------PDIIHGVADGYWAAEGIDMYLR 602 (604)
T ss_pred CCCEEEecCcCCc------hHHHHHHHHHHHHHHHHHHHhc
Confidence 4589999999863 3467799999999999998774
No 406
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=92.21 E-value=0.17 Score=46.36 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=29.4
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
..-.|+|||+|.++.-+|..|++ .|-+|+++=|++
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~~-~g~~V~~~~R~~ 200 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALAK-AGKSVTLVTRSP 200 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHTT-TCSEEEEEESS-
T ss_pred CCCcEEEEcChHHHHHHHHHHHh-hCCEEEEEecCC
Confidence 34679999999999999999999 999999998875
No 407
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=92.18 E-value=0.16 Score=41.34 Aligned_cols=33 Identities=27% Similarity=0.496 Sum_probs=29.8
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCC
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPS 118 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~ 118 (503)
...|+|||||..|..-+..|.+ .|.+|+|+.+.
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~-~gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLE-AGAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCC-CTBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHh-CCCEEEEECCc
Confidence 4679999999999999999999 99999999864
No 408
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=92.10 E-value=0.13 Score=52.73 Aligned_cols=28 Identities=21% Similarity=0.115 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHccCCCcEEEEcCCCCCCC
Q 010693 95 PAGLRLAEQVSSRHSVKVCCVDPSPLSTW 123 (503)
Q Consensus 95 paGl~~A~~La~~~G~~V~viE~~~~~~~ 123 (503)
+|||+||+.|++ +|++|+|+|+++..+.
T Consensus 1 iaGL~aA~~L~~-~G~~v~vlEa~~r~GG 28 (450)
T PF01593_consen 1 IAGLAAAYYLAK-AGYDVTVLEASDRVGG 28 (450)
T ss_dssp HHHHHHHHHHHH-TTTEEEEEESSSSSBT
T ss_pred ChHHHHHHHHHh-CCCCEEEEEcCCCCCc
Confidence 589999999999 9999999999987653
No 409
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.04 E-value=0.19 Score=49.38 Aligned_cols=33 Identities=27% Similarity=0.260 Sum_probs=30.5
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
-.|.|||+|.-|...|..|++ +|++|+++|+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~-~G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCAL-AGYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHH-CCCeEEEEeCCH
Confidence 459999999999999999999 999999999764
No 410
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.92 E-value=0.17 Score=49.63 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=30.3
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
-.|.|||+|..|...|..|++ .|++|+++|+++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~-~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFAR-TGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHh-cCCeEEEEeCCH
Confidence 359999999999999999999 999999999764
No 411
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=91.84 E-value=0.19 Score=49.54 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=29.2
Q ss_pred cEEEECCCHHHHHHHHHHHccCCCcEEEEcCC
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPS 118 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~ 118 (503)
.|+|||+|-.|...|..|++ .|.+|++++|+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~-~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQ-AGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCCeEEEEECC
Confidence 48999999999999999999 99999999974
No 412
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=91.81 E-value=0.19 Score=51.18 Aligned_cols=35 Identities=29% Similarity=0.282 Sum_probs=31.3
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
...+|+|||+|.+|+.+|..|.+ .|.+|+++|+++
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~-lGa~V~v~d~~~ 200 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANG-LGATVTILDINI 200 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHH-CCCeEEEEECCH
Confidence 34669999999999999999999 999999999753
No 413
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.79 E-value=0.21 Score=48.81 Aligned_cols=33 Identities=27% Similarity=0.348 Sum_probs=30.4
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
..|.|||+|..|...|..+++ +|++|+++|+++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~-~g~~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAV-AGYDVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHH-CCCceEEEeCCH
Confidence 369999999999999999999 999999999764
No 414
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=91.76 E-value=1.3 Score=43.63 Aligned_cols=90 Identities=20% Similarity=0.163 Sum_probs=61.1
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRP 165 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (503)
-||+|||||-+..-.|+.|++ .+-+|+++=|++....
T Consensus 144 k~v~ViGgG~sAve~Al~L~~-~a~~Vtlv~r~~~~ra------------------------------------------ 180 (305)
T COG0492 144 KDVVVIGGGDSAVEEALYLSK-IAKKVTLVHRRDEFRA------------------------------------------ 180 (305)
T ss_pred CeEEEEcCCHHHHHHHHHHHH-hcCeEEEEecCcccCc------------------------------------------
Confidence 399999999999999999999 9999999986532100
Q ss_pred ccccCHHHHHHHHHHHHHhC-CcEEE-EeEEEEEEEeC-CEEEEEeCCCc--EEEeceEEecCCCCc
Q 010693 166 YGRVSRNILKTKLLENCVSN-GVKFH-KAKVWHVNHQE-FESSIVCDDGN--EIKASLIVDASGFAS 227 (503)
Q Consensus 166 ~~~v~r~~l~~~L~~~~~~~-gv~~~-~~~v~~i~~~~-~~~~v~~~~g~--~i~a~~vI~A~G~~s 227 (503)
...+.+++.+. +++++ ++.+.++.-++ ..+++....|+ ++..+-|..+.|...
T Consensus 181 ---------~~~~~~~l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~~gvf~~iG~~p 238 (305)
T COG0492 181 ---------EEILVERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVFIAIGHLP 238 (305)
T ss_pred ---------CHHHHHHHHhcCCeEEEeCCceeEEecCccceEEEEecCCceEEEEeceEEEecCCCC
Confidence 12333334343 78888 88998888665 23333322132 577777777777644
No 415
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=91.65 E-value=0.18 Score=53.09 Aligned_cols=35 Identities=31% Similarity=0.408 Sum_probs=31.6
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
..-.|+|+|+|++|+.++..+.. .|.+|+++|.++
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~-lGA~V~a~D~~~ 198 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGS-LGAIVRAFDTRP 198 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH-CCCEEEEEeCCH
Confidence 45789999999999999999999 999999999754
No 416
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=91.57 E-value=0.22 Score=49.12 Aligned_cols=30 Identities=13% Similarity=0.287 Sum_probs=28.7
Q ss_pred cEEEECCCHHHHHHHHHHHccCCCcEEEEcC
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDP 117 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G~~V~viE~ 117 (503)
.|+|||+|..|.++|..|++ .|.+|++++|
T Consensus 2 kI~IiG~G~iG~~~a~~L~~-~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLE-AGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHH-CCCceEEEec
Confidence 58999999999999999999 9999999997
No 417
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=91.45 E-value=0.27 Score=44.00 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=29.0
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPS 118 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~ 118 (503)
....|+|+|+|.+|..||..|.. .|.+|+++|..
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~-lGa~v~~~d~~ 52 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKG-LGAEVVVPDER 52 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHH-TT-EEEEEESS
T ss_pred CCeEEEEECCCHHHHHHHHHHhH-CCCEEEeccCC
Confidence 34789999999999999999999 99999999964
No 418
>PRK04148 hypothetical protein; Provisional
Probab=91.42 E-value=0.2 Score=42.74 Aligned_cols=33 Identities=15% Similarity=0.318 Sum_probs=29.6
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPL 120 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~ 120 (503)
..+++||.| .|...|..|++ .|++|+.+|.++.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~-~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKE-SGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHH-CCCEEEEEECCHH
Confidence 569999999 99999999999 9999999997653
No 419
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=91.32 E-value=0.22 Score=51.62 Aligned_cols=34 Identities=29% Similarity=0.324 Sum_probs=31.2
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPL 120 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~ 120 (503)
..|.|||.|-.|+.+|..|++ +|++|+++|+++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~-~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFAS-RQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHh-CCCEEEEEeCCHH
Confidence 569999999999999999999 9999999998654
No 420
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=91.31 E-value=1.6 Score=46.15 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=27.6
Q ss_pred CcEEEECCCHHHHHHHHHHHccCC-CcEEEEcCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHS-VKVCCVDPSP 119 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G-~~V~viE~~~ 119 (503)
-.|+|||||..|+-+|..+.+ .| .+|+++|+.+
T Consensus 284 k~VvViGgG~~g~d~a~~a~~-~ga~~V~vv~~~~ 317 (485)
T TIGR01317 284 KKVVVIGGGDTGADCVGTSLR-HGAASVHQFEIMP 317 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHH-cCCCEEEEEEecC
Confidence 479999999999999877777 66 5799999654
No 421
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=91.29 E-value=0.24 Score=50.80 Aligned_cols=34 Identities=18% Similarity=0.337 Sum_probs=30.7
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
.-.|+|+|+|+.|+.+|..+.. .|.+|+++|+++
T Consensus 202 GktVvViG~G~IG~~va~~ak~-~Ga~ViV~d~d~ 235 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRG-QGARVIVTEVDP 235 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-CCCEEEEEECCh
Confidence 3579999999999999999999 999999999754
No 422
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.22 E-value=0.27 Score=48.72 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=29.2
Q ss_pred cEEEECCCHHHHHHHHHHHccCCC--cEEEEcCCC
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHSV--KVCCVDPSP 119 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G~--~V~viE~~~ 119 (503)
.|.|||+|..|.++|+.|++ .|+ .|+++|+++
T Consensus 2 kI~IIGaG~VG~~~a~~l~~-~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLL-RGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHH-cCCCCEEEEEECCc
Confidence 59999999999999999999 894 899999764
No 423
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=91.16 E-value=0.31 Score=45.09 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=29.4
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcC
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDP 117 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~ 117 (503)
.-.|+|||||-.|...|..|.+ .|.+|+|+++
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~-~ga~V~VIs~ 41 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLK-YGAHIVVISP 41 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-CCCeEEEEcC
Confidence 3579999999999999999999 9999999985
No 424
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=91.11 E-value=0.33 Score=44.83 Aligned_cols=34 Identities=26% Similarity=0.303 Sum_probs=31.0
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCC-cEEEEcCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSV-KVCCVDPS 118 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~-~V~viE~~ 118 (503)
....|+|||+|-.|..+|..|++ .|+ +++++|.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~-~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLAR-AGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHH-cCCCEEEEECCC
Confidence 45789999999999999999999 999 69999965
No 425
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=90.44 E-value=0.4 Score=47.49 Aligned_cols=36 Identities=33% Similarity=0.405 Sum_probs=33.8
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCC
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLS 121 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~ 121 (503)
.|||+|+|.|+.=+.++.+|+. .|.+|+.||+++.-
T Consensus 6 ~yDvii~GTgl~esils~~Ls~-~~k~VlhiD~Nd~Y 41 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSW-DGKNVLHIDKNDYY 41 (434)
T ss_pred cccEEEecccHHHHHHHHHhhh-cCceEEEEeCCCcc
Confidence 7999999999999999999999 99999999998654
No 426
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=90.21 E-value=0.43 Score=47.22 Aligned_cols=32 Identities=19% Similarity=0.324 Sum_probs=29.1
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCC-cEEEEcCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSV-KVCCVDPS 118 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~-~V~viE~~ 118 (503)
..|.|||+|..|+..|+.|+. .|+ +|+++|..
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~-~g~~~VvlvDi~ 34 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAE-KELADLVLLDVV 34 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHH-cCCCeEEEEeCC
Confidence 369999999999999999999 887 89999974
No 427
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=90.06 E-value=0.39 Score=48.26 Aligned_cols=32 Identities=16% Similarity=0.379 Sum_probs=29.8
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPS 118 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~ 118 (503)
..|.|||+|..|...|..|++ .|++|++++|.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~-~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAA-AGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHh-cCCcEEEEecH
Confidence 469999999999999999999 99999999974
No 428
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=89.95 E-value=3 Score=45.17 Aligned_cols=38 Identities=24% Similarity=0.232 Sum_probs=29.9
Q ss_pred CCCEEEeccCCCCcCCcccHHHHHHHHhHHHHHHHHHHHhcCC
Q 010693 351 PQSVMAIGSTSGLVHPSTGYMVARTMALAPALADAIAECLGST 393 (503)
Q Consensus 351 ~~~v~liGDAa~~~~P~~G~G~~~al~~a~~lA~~l~~~l~~~ 393 (503)
.++|+.+||++.. | ..+..|+.+|..+|..|...+.+.
T Consensus 409 ~~~Vfa~GD~~~g--~---~~v~~Av~~G~~aA~~i~~~L~g~ 446 (564)
T PRK12771 409 RPGVFAGGDMVPG--P---RTVTTAIGHGKKAARNIDAFLGGE 446 (564)
T ss_pred CCCEEeccCcCCC--c---hHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4589999998752 2 245679999999999999998754
No 429
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=89.94 E-value=0.57 Score=47.17 Aligned_cols=46 Identities=13% Similarity=0.221 Sum_probs=35.7
Q ss_pred CCcEEE-EeEEEEEEEeCCE-EEEEeCC---C--cEEEeceEEecCCCCcccc
Q 010693 185 NGVKFH-KAKVWHVNHQEFE-SSIVCDD---G--NEIKASLIVDASGFASSFV 230 (503)
Q Consensus 185 ~gv~~~-~~~v~~i~~~~~~-~~v~~~~---g--~~i~a~~vI~A~G~~s~vr 230 (503)
..+.++ .++|+.++..+++ +.+.+.. | .+++.|.||.|||..-.+.
T Consensus 291 ~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P 343 (436)
T COG3486 291 PDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVP 343 (436)
T ss_pred CCeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCc
Confidence 458888 8999999988765 7666532 2 3799999999999885443
No 430
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=89.80 E-value=0.48 Score=45.69 Aligned_cols=34 Identities=18% Similarity=0.358 Sum_probs=30.7
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCC-cEEEEcCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSV-KVCCVDPS 118 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~-~V~viE~~ 118 (503)
....|+|||+|-.|..+|..|++ .|+ +++|+|.+
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar-~GVg~itLiD~D 63 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALAR-TGIGAITLIDMD 63 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHH-cCCCEEEEEeCC
Confidence 45779999999999999999999 995 89999964
No 431
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=89.80 E-value=0.48 Score=45.22 Aligned_cols=36 Identities=22% Similarity=0.356 Sum_probs=32.6
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPL 120 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~ 120 (503)
....++|+|+|+.+..+|..++. .|++|+|+|.++.
T Consensus 99 p~~~L~IfGaG~va~~la~la~~-lGf~V~v~D~R~~ 134 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAP-LPCRVTWVDSREA 134 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhc-CCCEEEEEeCCcc
Confidence 35789999999999999999999 9999999997754
No 432
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=89.76 E-value=0.31 Score=50.45 Aligned_cols=33 Identities=30% Similarity=0.388 Sum_probs=30.5
Q ss_pred cEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCC
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPL 120 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~ 120 (503)
.|.|||.|-.|+.+|..|++ .|++|+++|+++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~-~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLAD-LGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHh-cCCeEEEEECCHH
Confidence 58999999999999999999 9999999998653
No 433
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=89.73 E-value=0.61 Score=40.01 Aligned_cols=34 Identities=24% Similarity=0.370 Sum_probs=30.4
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCc-EEEEcCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVK-VCCVDPS 118 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~-V~viE~~ 118 (503)
..-.++|||+|-+|.+++..|+. .|.+ |+|+-|.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~-~g~~~i~i~nRt 45 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAA-LGAKEITIVNRT 45 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHH-TTSSEEEEEESS
T ss_pred CCCEEEEECCHHHHHHHHHHHHH-cCCCEEEEEECC
Confidence 34679999999999999999999 9987 9999874
No 434
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.66 E-value=0.45 Score=47.19 Aligned_cols=33 Identities=24% Similarity=0.416 Sum_probs=30.2
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
-.|.|||+|..|...|..|++ .|++|+++|+++
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~-~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFAR-KGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHh-CCCeEEEEECCH
Confidence 359999999999999999999 999999999754
No 435
>PLN02712 arogenate dehydrogenase
Probab=89.60 E-value=1.2 Score=48.85 Aligned_cols=43 Identities=30% Similarity=0.386 Sum_probs=34.7
Q ss_pred CCCCCCCCCCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCC
Q 010693 75 LPWFHPSDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPS 118 (503)
Q Consensus 75 ~~~~~~~~~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~ 118 (503)
+|+.++.+.....|.|||.|..|-+.|..|.+ .|++|+++++.
T Consensus 42 ~~~~~~~~~~~~kIgIIG~G~mG~slA~~L~~-~G~~V~~~dr~ 84 (667)
T PLN02712 42 LPNSNPDNTTQLKIAIIGFGNYGQFLAKTLIS-QGHTVLAHSRS 84 (667)
T ss_pred CCCCCCccCCCCEEEEEccCHHHHHHHHHHHH-CCCEEEEEeCC
Confidence 34333334445679999999999999999999 99999999975
No 436
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.43 E-value=0.35 Score=48.43 Aligned_cols=36 Identities=31% Similarity=0.417 Sum_probs=33.4
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPL 120 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~ 120 (503)
..|||||||.|..-..+|.+.++ .|.+|+=+|+++-
T Consensus 7 ~~fDvVViGTGlpESilAAAcSr-sG~sVLHlDsn~y 42 (547)
T KOG4405|consen 7 EEFDVVVIGTGLPESILAAACSR-SGSSVLHLDSNEY 42 (547)
T ss_pred hhccEEEEcCCCcHHHHHHHhhh-cCCceEeccCccc
Confidence 57999999999999999999999 9999999998754
No 437
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=89.40 E-value=0.43 Score=47.55 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=30.3
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
..|.|||+|..|...|..|++ .|++|.++++.+
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~-~g~~V~~~~r~~ 34 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLAR-NGHDVTLWARDP 34 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCCEEEEEECCH
Confidence 369999999999999999999 999999999754
No 438
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=89.35 E-value=0.41 Score=47.06 Aligned_cols=32 Identities=25% Similarity=0.493 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
.|.|||+|.-|...|..|++ .|++|+++|+++
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~-~G~~V~~~d~~~ 37 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAA-AGMDVWLLDSDP 37 (295)
T ss_pred EEEEECCCHHHHHHHHHHHh-cCCeEEEEeCCH
Confidence 49999999999999999999 999999999764
No 439
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=89.34 E-value=0.43 Score=42.40 Aligned_cols=33 Identities=27% Similarity=0.430 Sum_probs=28.6
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
..|.|||.|-.|...|..|.+ +|++|.++||.+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~-~g~~v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAK-AGYEVTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHH-TTTEEEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHh-cCCeEEeeccch
Confidence 468999999999999999999 999999999764
No 440
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.19 E-value=0.49 Score=47.30 Aligned_cols=32 Identities=25% Similarity=0.357 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
.|.|||+|..|.+.|..|++ .|.+|.++.|++
T Consensus 2 kI~IiGaGa~G~ala~~L~~-~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSS-KKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHH-CCCeEEEEecCH
Confidence 48999999999999999999 999999999753
No 441
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=89.05 E-value=0.5 Score=48.43 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=31.0
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
.-.|+|+|.|+.|..+|..|.. .|.+|+++|.++
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~-~Ga~ViV~d~dp 228 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARG-MGARVIVTEVDP 228 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhh-CcCEEEEEeCCh
Confidence 3579999999999999999999 999999999765
No 442
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.02 E-value=0.51 Score=47.23 Aligned_cols=33 Identities=30% Similarity=0.371 Sum_probs=30.5
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
..|.|||+|.-|...|..|++ .|++|++++|++
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~-~G~~V~~~~r~~ 37 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAAS-KGVPVRLWARRP 37 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHH-CCCeEEEEeCCH
Confidence 469999999999999999999 999999999854
No 443
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=89.00 E-value=0.51 Score=40.41 Aligned_cols=33 Identities=33% Similarity=0.545 Sum_probs=29.6
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCC-cEEEEcCC
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSV-KVCCVDPS 118 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~-~V~viE~~ 118 (503)
+..|+|||+|-.|..+|..|++ .|. +++|+|.+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~-~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLAR-SGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHH-HTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHH-hCCCceeecCCc
Confidence 3579999999999999999999 998 79999976
No 444
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=88.95 E-value=0.46 Score=47.72 Aligned_cols=33 Identities=30% Similarity=0.498 Sum_probs=30.4
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
+.|.|||.|-.||..|..||+ .|++|+++|.++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~-~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAE-LGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHH-cCCeEEEEeCCH
Confidence 368999999999999999999 999999999764
No 445
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=88.84 E-value=0.43 Score=46.52 Aligned_cols=32 Identities=25% Similarity=0.243 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
.|.|||.|..|.+.|..|++ +|++|+++++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~-~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRS-LGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHH-CCCEEEEEECCH
Confidence 58999999999999999999 999999999753
No 446
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=88.69 E-value=0.61 Score=46.81 Aligned_cols=35 Identities=26% Similarity=0.364 Sum_probs=31.4
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCC-cEEEEcCCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSV-KVCCVDPSP 119 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~-~V~viE~~~ 119 (503)
....|+|||+|-.|..+|..|++ .|. +++|+|++.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~-aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVR-AGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCc
Confidence 45679999999999999999999 998 899999753
No 447
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=88.11 E-value=0.45 Score=46.12 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=31.3
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPS 118 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~ 118 (503)
..-+|+|+|||.+|.-+|..+.. .|-+|+++|.+
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~g-lgA~Vtild~n 200 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIG-LGADVTILDLN 200 (371)
T ss_pred CCccEEEECCccccchHHHHHhc-cCCeeEEEecC
Confidence 45789999999999999999999 99999999975
No 448
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=88.10 E-value=0.54 Score=49.52 Aligned_cols=35 Identities=31% Similarity=0.413 Sum_probs=31.4
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
..-.|+|+|+|++|+.++..+.. .|.+|+++|+++
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~-lGA~V~v~d~~~ 197 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANS-LGAIVRAFDTRP 197 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCH
Confidence 34789999999999999999999 999999999754
No 449
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=88.02 E-value=0.9 Score=45.26 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCC-cEEEEcCCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSV-KVCCVDPSPL 120 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~-~V~viE~~~~ 120 (503)
..|+|||+|-.|..+|+.++. .|+ +++++|.++.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~-~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVL-KNLGDVVLFDIVKN 41 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCCCeEEEEeCCCc
Confidence 579999999999999999999 896 9999998664
No 450
>PRK06223 malate dehydrogenase; Reviewed
Probab=88.02 E-value=0.73 Score=45.58 Aligned_cols=33 Identities=27% Similarity=0.381 Sum_probs=29.7
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCC-cEEEEcCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSV-KVCCVDPSP 119 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~-~V~viE~~~ 119 (503)
..|+|||+|..|..+|..++. .|+ .|+++|..+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~-~~~~ev~L~D~~~ 36 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLAL-KELGDVVLFDIVE 36 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCCeEEEEEECCC
Confidence 579999999999999999999 876 999999754
No 451
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=88.00 E-value=0.86 Score=39.45 Aligned_cols=32 Identities=28% Similarity=0.473 Sum_probs=28.3
Q ss_pred cEEEECC-CHHHHHHHHHHHccCCC--cEEEEcCCC
Q 010693 87 DVIIIGT-GPAGLRLAEQVSSRHSV--KVCCVDPSP 119 (503)
Q Consensus 87 DvvIVGg-GpaGl~~A~~La~~~G~--~V~viE~~~ 119 (503)
.|.|||+ |..|.++|+.|.. .++ +++++|..+
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~-~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQ-QGLADEIVLIDINE 36 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHH-TTTSSEEEEEESSH
T ss_pred EEEEECCCChHHHHHHHHHHh-CCCCCceEEeccCc
Confidence 6899999 9999999999999 775 699999653
No 452
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=87.98 E-value=0.54 Score=49.87 Aligned_cols=33 Identities=27% Similarity=0.346 Sum_probs=30.6
Q ss_pred cEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCC
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPL 120 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~ 120 (503)
.|.|||+|.-|...|..+++ .|++|+++|+++.
T Consensus 7 kV~VIGaG~MG~gIA~~la~-aG~~V~l~d~~~e 39 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAAS-AGHQVLLYDIRAE 39 (503)
T ss_pred EEEEECcCHHHHHHHHHHHh-CCCeEEEEeCCHH
Confidence 49999999999999999999 9999999998754
No 453
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=87.87 E-value=0.61 Score=47.15 Aligned_cols=32 Identities=34% Similarity=0.547 Sum_probs=26.5
Q ss_pred cEEEECCCHHHHHHHHHHHccCCC-cEEEEcCCC
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHSV-KVCCVDPSP 119 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G~-~V~viE~~~ 119 (503)
.|+|+|+||.||.++..+.. .|. +|+++|+.+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~-~Ga~~Viv~d~~~ 203 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKL-LGASVVIVVDRSP 203 (350)
T ss_pred EEEEECCCHHHHHHHHHHHH-cCCceEEEeCCCH
Confidence 69999999999999887777 885 667777643
No 454
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=87.76 E-value=0.64 Score=48.83 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=29.7
Q ss_pred CcEEEECCCHHHHHHHHHHHccC--CCcEEEEcCCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRH--SVKVCCVDPSPL 120 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~--G~~V~viE~~~~ 120 (503)
..|.|||.|-.|+.+|..||+ + |++|+.+|.++.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~-~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIAL-KCPDIEVVVVDISVP 37 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHh-cCCCCeEEEEECCHH
Confidence 469999999999999999998 7 588999997643
No 455
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=87.74 E-value=0.72 Score=45.12 Aligned_cols=32 Identities=25% Similarity=0.394 Sum_probs=29.4
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCC-cEEEEcCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSV-KVCCVDPS 118 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~-~V~viE~~ 118 (503)
-.|+|+|+|-+|.++|..|++ .|. +|+|++|.
T Consensus 128 k~vlIlGaGGaaraia~aL~~-~G~~~I~I~nR~ 160 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLT-LGVERLTIFDVD 160 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHH-cCCCEEEEECCC
Confidence 479999999999999999999 998 79999975
No 456
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.66 E-value=0.85 Score=45.19 Aligned_cols=33 Identities=24% Similarity=0.304 Sum_probs=30.6
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
..|.|||+|-.|.+.|..|++ .|++|.+++|.+
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~-~G~~V~~~~r~~ 37 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASA-NGHRVRVWSRRS 37 (308)
T ss_pred CEEEEECccHHHHHHHHHHHH-CCCEEEEEeCCC
Confidence 469999999999999999999 999999999864
No 457
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=87.59 E-value=0.61 Score=50.37 Aligned_cols=36 Identities=19% Similarity=0.405 Sum_probs=32.6
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 83 RIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 83 ~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
..+-.++|+|+|..|..+|..|.+ +|++|+++|+++
T Consensus 415 ~~~~hiiI~G~G~~G~~la~~L~~-~g~~vvvId~d~ 450 (558)
T PRK10669 415 DICNHALLVGYGRVGSLLGEKLLA-AGIPLVVIETSR 450 (558)
T ss_pred ccCCCEEEECCChHHHHHHHHHHH-CCCCEEEEECCH
Confidence 345789999999999999999999 999999999764
No 458
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=87.55 E-value=0.74 Score=45.55 Aligned_cols=33 Identities=24% Similarity=0.392 Sum_probs=29.3
Q ss_pred cEEEECCCHHHHHHHHHHHccCC--CcEEEEcCCCC
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHS--VKVCCVDPSPL 120 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G--~~V~viE~~~~ 120 (503)
.|+|||+|-+|.++|+.|+. .| ..++++|+.+.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~-~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVN-QGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHh-cCCCCEEEEEeCCcc
Confidence 48999999999999999999 89 47999998653
No 459
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=87.55 E-value=0.65 Score=45.83 Aligned_cols=31 Identities=29% Similarity=0.455 Sum_probs=28.2
Q ss_pred EEEECCCHHHHHHHHHHHccCCC-cEEEEcCCC
Q 010693 88 VIIIGTGPAGLRLAEQVSSRHSV-KVCCVDPSP 119 (503)
Q Consensus 88 vvIVGgGpaGl~~A~~La~~~G~-~V~viE~~~ 119 (503)
|.|||+|-.|..+|..|+. .|+ .|+++|.++
T Consensus 1 I~IIGaG~vG~~ia~~la~-~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL-KELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-CCCcEEEEEeCCC
Confidence 5799999999999999998 887 999999764
No 460
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.53 E-value=0.65 Score=48.59 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
.++|+|+|.+|+++|..|++ .|.+|++.|+..
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~-~G~~V~~~d~~~ 38 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHK-LGANVTVNDGKP 38 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHH-CCCEEEEEcCCC
Confidence 58999999999999999999 999999999754
No 461
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.49 E-value=0.64 Score=49.29 Aligned_cols=31 Identities=16% Similarity=0.356 Sum_probs=29.0
Q ss_pred cEEEECCCHHHHHHHHHHHccCCCcEEEEcCC
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPS 118 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~ 118 (503)
.|+|+|.|.+|++++..|.+ .|.+|++.|+.
T Consensus 14 ~v~V~G~G~sG~aa~~~L~~-~G~~v~~~D~~ 44 (488)
T PRK03369 14 PVLVAGAGVTGRAVLAALTR-FGARPTVCDDD 44 (488)
T ss_pred eEEEEcCCHHHHHHHHHHHH-CCCEEEEEcCC
Confidence 59999999999999999999 99999999964
No 462
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=87.40 E-value=0.97 Score=44.92 Aligned_cols=35 Identities=17% Similarity=0.396 Sum_probs=30.8
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCC--cEEEEcCCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSV--KVCCVDPSP 119 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~--~V~viE~~~ 119 (503)
....|+|||+|-.|.++|+.|+. .|+ .++++|...
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~-~~~~~el~L~D~~~ 41 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVN-QGIADELVIIDINK 41 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh-cCCCCEEEEEeCCC
Confidence 34689999999999999999999 887 799999743
No 463
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=87.38 E-value=0.92 Score=41.93 Aligned_cols=36 Identities=28% Similarity=0.380 Sum_probs=31.9
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHccCCC-cEEEEcCC
Q 010693 82 DRIRYDVIIIGTGPAGLRLAEQVSSRHSV-KVCCVDPS 118 (503)
Q Consensus 82 ~~~~~DvvIVGgGpaGl~~A~~La~~~G~-~V~viE~~ 118 (503)
+-....|+|||.|-.|..+|..|++ .|. +++++|.+
T Consensus 18 kl~~~~VlviG~GglGs~ia~~La~-~Gv~~i~lvD~d 54 (202)
T TIGR02356 18 RLLNSHVLIIGAGGLGSPAALYLAG-AGVGTIVIVDDD 54 (202)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHH-cCCCeEEEecCC
Confidence 3356789999999999999999999 998 89999965
No 464
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=87.36 E-value=0.86 Score=41.02 Aligned_cols=31 Identities=29% Similarity=0.319 Sum_probs=28.3
Q ss_pred cEEEECCCHHHHHHHHHHHccCCC-cEEEEcCC
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHSV-KVCCVDPS 118 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G~-~V~viE~~ 118 (503)
.|+|||+|-.|...|..|++ .|. +++++|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~-~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLAR-SGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHH-cCCCeEEEEeCC
Confidence 38999999999999999999 998 59999964
No 465
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=87.36 E-value=0.69 Score=40.82 Aligned_cols=33 Identities=24% Similarity=0.459 Sum_probs=26.7
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
-.++|+|-|..|..+|..|+. .|.+|+|.|.+|
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~-~Ga~V~V~e~DP 56 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRG-LGARVTVTEIDP 56 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHH-TT-EEEEE-SSH
T ss_pred CEEEEeCCCcccHHHHHHHhh-CCCEEEEEECCh
Confidence 359999999999999999999 999999999765
No 466
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=87.25 E-value=0.63 Score=49.46 Aligned_cols=34 Identities=24% Similarity=0.294 Sum_probs=31.1
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPL 120 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~ 120 (503)
-.|.|||+|.-|...|..|++ .|+.|+++|+.+.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~-aG~~V~l~D~~~e 41 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQ-AGHTVLLYDARAG 41 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCCeEEEEeCCHH
Confidence 359999999999999999999 9999999998754
No 467
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=87.20 E-value=0.77 Score=47.35 Aligned_cols=34 Identities=21% Similarity=0.351 Sum_probs=31.0
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
.-.|+|+|.|..|..+|..|.. .|.+|+++|+++
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~-~Ga~ViV~d~dp 245 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRG-LGARVIVTEVDP 245 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-CCCEEEEEcCCc
Confidence 3469999999999999999999 999999999765
No 468
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=87.16 E-value=0.78 Score=45.42 Aligned_cols=33 Identities=27% Similarity=0.389 Sum_probs=29.4
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCC--cEEEEcCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSV--KVCCVDPSP 119 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~--~V~viE~~~ 119 (503)
..|+|||+|..|.+.|..|++ .|+ +|.++++++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~-~g~~~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRR-LGLAGEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHh-cCCCcEEEEEECCH
Confidence 469999999999999999999 885 899999754
No 469
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=87.14 E-value=0.9 Score=43.23 Aligned_cols=34 Identities=21% Similarity=0.322 Sum_probs=30.6
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCC-cEEEEcCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSV-KVCCVDPS 118 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~-~V~viE~~ 118 (503)
....|+|||+|-.|..+|..|++ .|. +++++|.+
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~-~Gvg~i~lvD~D 57 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAA-AGVGNLTLLDFD 57 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHH-cCCCEEEEEeCC
Confidence 45789999999999999999999 997 78999965
No 470
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=87.04 E-value=0.61 Score=51.84 Aligned_cols=35 Identities=26% Similarity=0.244 Sum_probs=31.5
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCC
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPL 120 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~ 120 (503)
.-.|.|||+|..|...|..++. .|++|+++|.++.
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~-~G~~V~l~d~~~~ 347 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSAS-KGVPVIMKDINQK 347 (715)
T ss_pred cceEEEECCchhHHHHHHHHHh-CCCeEEEEeCCHH
Confidence 3469999999999999999999 9999999997643
No 471
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=86.99 E-value=0.69 Score=49.11 Aligned_cols=32 Identities=28% Similarity=0.412 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
.|.|||+|.-|...|..|++ +|++|+++|+.+
T Consensus 6 kIavIG~G~MG~~iA~~la~-~G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLL-AGIDVAVFDPHP 37 (495)
T ss_pred EEEEECcCHHHHHHHHHHHh-CCCeEEEEeCCH
Confidence 59999999999999999999 999999999864
No 472
>PLN02676 polyamine oxidase
Probab=86.91 E-value=1.5 Score=46.55 Aligned_cols=39 Identities=21% Similarity=0.380 Sum_probs=34.6
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHccCCC-cEEEEcCCCCCC
Q 010693 83 RIRYDVIIIGTGPAGLRLAEQVSSRHSV-KVCCVDPSPLST 122 (503)
Q Consensus 83 ~~~~DvvIVGgGpaGl~~A~~La~~~G~-~V~viE~~~~~~ 122 (503)
...+||+|||||++||++|..|++ +|. +|+|+|++...+
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~-~g~~~v~vlE~~~~~G 63 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSE-AGIEDILILEATDRIG 63 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH-cCCCcEEEecCCCCCC
Confidence 346899999999999999999999 998 699999987653
No 473
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=86.89 E-value=0.77 Score=45.19 Aligned_cols=34 Identities=21% Similarity=0.388 Sum_probs=31.3
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
...|+|+|.|.+|..+|..|.+ .|.+|.+++|++
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~-~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKA-LGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHH-CCCEEEEEECCH
Confidence 4689999999999999999999 999999999864
No 474
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.87 E-value=0.84 Score=47.76 Aligned_cols=34 Identities=15% Similarity=0.351 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPL 120 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~ 120 (503)
-.++|+|.|.+|+++|..|++ .|++|++.|..+.
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~-~g~~v~~~d~~~~ 39 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRK-NGAEVAAYDAELK 39 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCCC
Confidence 369999999999999999999 9999999997643
No 475
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=86.76 E-value=0.93 Score=45.51 Aligned_cols=34 Identities=38% Similarity=0.456 Sum_probs=31.3
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCC-cEEEEcCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSV-KVCCVDPS 118 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~-~V~viE~~ 118 (503)
....|+|||+|-.|..+|..|++ .|. +++|+|.+
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~-aGvg~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVR-AGVGKVTIVDRD 57 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHH-cCCCeEEEEeCC
Confidence 45789999999999999999999 999 89999974
No 476
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=86.59 E-value=0.67 Score=51.43 Aligned_cols=36 Identities=19% Similarity=0.180 Sum_probs=32.0
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPL 120 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~ 120 (503)
..-.|.|||+|..|...|..++. +|++|+++|.++.
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~-~G~~V~l~d~~~~ 347 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSAS-KGTPIVMKDINQH 347 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHh-CCCeEEEEeCCHH
Confidence 34569999999999999999999 9999999997643
No 477
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.49 E-value=0.85 Score=47.96 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=30.5
Q ss_pred cEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCC
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPL 120 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~ 120 (503)
.|+|+|.|.+|+++|..|.+ .|++|.+.|+++.
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~-~G~~V~~~D~~~~ 48 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVK-LGAKVTAFDKKSE 48 (458)
T ss_pred eEEEEcccHHHHHHHHHHHH-CCCEEEEECCCCC
Confidence 59999999999999999999 9999999997653
No 478
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=86.42 E-value=29 Score=39.06 Aligned_cols=37 Identities=8% Similarity=0.097 Sum_probs=30.9
Q ss_pred EEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCCC
Q 010693 188 KFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGF 225 (503)
Q Consensus 188 ~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G~ 225 (503)
.++ ++.|+.|...++++.| +.+|+++.||.||.|.-.
T Consensus 448 ~I~ln~~V~~I~~~~dgV~V-~~~G~~~~AD~VIvTvPl 485 (808)
T PLN02328 448 PIFYERTVESIRYGVDGVIV-YAGGQEFHGDMVLCTVPL 485 (808)
T ss_pred CcccCCeeEEEEEcCCeEEE-EeCCeEEEcCEEEECCCH
Confidence 366 9999999998888877 456778999999999754
No 479
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=86.40 E-value=0.68 Score=42.74 Aligned_cols=35 Identities=26% Similarity=0.398 Sum_probs=31.6
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
..--|.|||||.-|.-.|...+. .|++|.++|++.
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~-sg~~V~l~d~~~ 44 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAAT-SGLNVWLVDANE 44 (298)
T ss_pred cccceEEEcccccchhHHHHHHh-cCCceEEecCCH
Confidence 44679999999999999999999 999999999764
No 480
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=86.34 E-value=1.1 Score=42.87 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=30.7
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCC-cEEEEcCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSV-KVCCVDPS 118 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~-~V~viE~~ 118 (503)
....|+|||+|..|..+|..|++ .|. +++|+|.+
T Consensus 31 ~~~~VliiG~GglGs~va~~La~-~Gvg~i~lvD~D 65 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAA-AGVGTLTLVDFD 65 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCC
Confidence 45789999999999999999999 997 89999964
No 481
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=86.28 E-value=0.45 Score=40.32 Aligned_cols=35 Identities=29% Similarity=0.378 Sum_probs=28.1
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcC
Q 010693 82 DRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDP 117 (503)
Q Consensus 82 ~~~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~ 117 (503)
.....+|.|||+|-.|..+|..|.+ .|+.|.-+..
T Consensus 7 ~~~~l~I~iIGaGrVG~~La~aL~~-ag~~v~~v~s 41 (127)
T PF10727_consen 7 QAARLKIGIIGAGRVGTALARALAR-AGHEVVGVYS 41 (127)
T ss_dssp -----EEEEECTSCCCCHHHHHHHH-TTSEEEEESS
T ss_pred CCCccEEEEECCCHHHHHHHHHHHH-CCCeEEEEEe
Confidence 4567899999999999999999999 9999988863
No 482
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=86.24 E-value=1.1 Score=38.61 Aligned_cols=31 Identities=26% Similarity=0.474 Sum_probs=28.6
Q ss_pred cEEEECCCHHHHHHHHHHHccCCC-cEEEEcCC
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHSV-KVCCVDPS 118 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G~-~V~viE~~ 118 (503)
.|+|||+|-.|..+|..|++ .|. +++++|.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~-~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLAR-SGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHH-CCCCEEEEEcCC
Confidence 38999999999999999999 998 79999965
No 483
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=86.17 E-value=0.81 Score=47.90 Aligned_cols=33 Identities=33% Similarity=0.581 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCC
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPL 120 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~ 120 (503)
.|+|+|+|..|..+|..|.+ .|++|+++|+++.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~-~g~~v~vid~~~~ 34 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSG-ENNDVTVIDTDEE 34 (453)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCCcEEEEECCHH
Confidence 58999999999999999999 9999999998643
No 484
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=86.17 E-value=0.91 Score=42.49 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=28.8
Q ss_pred cEEEEC-CCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 87 DVIIIG-TGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 87 DvvIVG-gGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
.|.||| +|..|.++|..|++ .|++|.+++|++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~-~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAK-AGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHh-CCCEEEEEEcCH
Confidence 589997 79999999999999 999999998754
No 485
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=86.14 E-value=1.5 Score=40.38 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=30.2
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCC
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPS 118 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~ 118 (503)
...++|+|.|-.|..+|..|.+ .|.+|+++|++
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~-~G~~Vvv~D~~ 60 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLE-EGAKLIVADIN 60 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-CCCEEEEEcCC
Confidence 3469999999999999999999 99999999865
No 486
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=85.95 E-value=1 Score=45.72 Aligned_cols=33 Identities=24% Similarity=0.447 Sum_probs=30.5
Q ss_pred CcEEEECCCHHHHHHHHHHHccCC-CcEEEEcCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHS-VKVCCVDPSP 119 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G-~~V~viE~~~ 119 (503)
.+|+|||+|-.|..+|..|++ .| .+|+|.+|..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~-~~d~~V~iAdRs~ 35 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQ-NGDGEVTIADRSK 35 (389)
T ss_pred CcEEEECCchhHHHHHHHHHh-CCCceEEEEeCCH
Confidence 579999999999999999999 88 8999999874
No 487
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=85.85 E-value=0.42 Score=47.86 Aligned_cols=36 Identities=33% Similarity=0.470 Sum_probs=33.5
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCC
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLS 121 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~ 121 (503)
.|||+|+|.|..=+.++.+|+. .|-+|+.|||++--
T Consensus 4 eyDvivlGTgl~ecilS~~Ls~-~gkkVLhiDrN~yY 39 (440)
T KOG1439|consen 4 EYDVIVLGTGLTECILSGALSV-DGKKVLHIDRNDYY 39 (440)
T ss_pred ceeEEEEcCCchhheeeeeeee-cCcEEEEEeCCCCC
Confidence 4999999999999999999999 99999999998654
No 488
>PLN02494 adenosylhomocysteinase
Probab=85.82 E-value=1 Score=46.81 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=31.1
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
.-.|+|+|.|..|..+|..+.. .|.+|+++|+++
T Consensus 254 GKtVvViGyG~IGr~vA~~aka-~Ga~VIV~e~dp 287 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKA-AGARVIVTEIDP 287 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCc
Confidence 3579999999999999999998 999999999865
No 489
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=85.81 E-value=0.79 Score=51.05 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=32.0
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPL 120 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~ 120 (503)
..-.|.|||+|..|...|..++. .|++|+++|.++.
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~-~G~~V~l~d~~~~ 369 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVD-KGLKTVLKDATPA 369 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHh-CCCcEEEecCCHH
Confidence 34569999999999999999999 9999999997653
No 490
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=85.76 E-value=1.2 Score=41.40 Aligned_cols=35 Identities=26% Similarity=0.260 Sum_probs=31.1
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHccCCC-cEEEEcCC
Q 010693 83 RIRYDVIIIGTGPAGLRLAEQVSSRHSV-KVCCVDPS 118 (503)
Q Consensus 83 ~~~~DvvIVGgGpaGl~~A~~La~~~G~-~V~viE~~ 118 (503)
-....|+|||+|-.|..+|..|++ .|. +++++|.+
T Consensus 26 L~~~~V~ViG~GglGs~ia~~La~-~Gvg~i~lvD~D 61 (212)
T PRK08644 26 LKKAKVGIAGAGGLGSNIAVALAR-SGVGNLKLVDFD 61 (212)
T ss_pred HhCCCEEEECcCHHHHHHHHHHHH-cCCCeEEEEeCC
Confidence 346789999999999999999999 998 59999964
No 491
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=85.71 E-value=0.85 Score=44.72 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=29.4
Q ss_pred cEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
.|.|||.|..|...|..|++ .|++|+++++++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~-~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAK-AGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHH-CCCeEEEEcCCH
Confidence 37899999999999999999 999999999764
No 492
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=85.58 E-value=1.2 Score=42.00 Aligned_cols=33 Identities=27% Similarity=0.505 Sum_probs=29.7
Q ss_pred CcEEEECCCHHHHHHHHHHHccCCCc---EEEEcCCC
Q 010693 86 YDVIIIGTGPAGLRLAEQVSSRHSVK---VCCVDPSP 119 (503)
Q Consensus 86 ~DvvIVGgGpaGl~~A~~La~~~G~~---V~viE~~~ 119 (503)
..++|+|+|-+|..+|..|.+ .|.+ +.|++|..
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~-~G~~~~~i~ivdr~g 61 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLA-AGAKPENIVVVDSKG 61 (226)
T ss_pred CEEEEECchHHHHHHHHHHHH-cCcCcceEEEEeCCC
Confidence 579999999999999999999 9985 99999863
No 493
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=85.38 E-value=3.6 Score=44.55 Aligned_cols=59 Identities=14% Similarity=0.205 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCEEE-EE---eCCCc--EEEeceEEecCCCCccc
Q 010693 171 RNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFESS-IV---CDDGN--EIKASLIVDASGFASSF 229 (503)
Q Consensus 171 r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~-v~---~~~g~--~i~a~~vI~A~G~~s~v 229 (503)
-..+...|.+.+.+.|++++ ++.++++..+++.+. +. ..+|+ .+.|+.||.|+|..+.+
T Consensus 118 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~~ 183 (565)
T TIGR01816 118 GHAILHTLYQQNLKADTSFFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGGYGRI 183 (565)
T ss_pred hHHHHHHHHHHHHhCCCEEEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCcccc
Confidence 35688889999988999999 999999987666443 22 23454 58999999999976643
No 494
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=85.32 E-value=1.4 Score=43.74 Aligned_cols=34 Identities=24% Similarity=0.435 Sum_probs=29.8
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCC--cEEEEcCCC
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSV--KVCCVDPSP 119 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~--~V~viE~~~ 119 (503)
+..|+|||+|-.|.++|+.|+. .|+ .++++|...
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~-~~~~~el~LiD~~~ 38 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILA-KGLADELVLVDVVE 38 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-cCCCCEEEEEeCCc
Confidence 4689999999999999999998 776 699999754
No 495
>PRK08328 hypothetical protein; Provisional
Probab=85.29 E-value=1.3 Score=41.92 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=30.2
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCC-cEEEEcCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSV-KVCCVDPS 118 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~-~V~viE~~ 118 (503)
....|+|||+|-.|..+|..|++ .|. +++|+|.+
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~-~Gvg~i~lvD~D 60 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAA-AGVGRILLIDEQ 60 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCC
Confidence 35679999999999999999999 997 78999854
No 496
>PLN02529 lysine-specific histone demethylase 1
Probab=85.16 E-value=62 Score=36.17 Aligned_cols=38 Identities=11% Similarity=0.144 Sum_probs=31.7
Q ss_pred CcEEE-EeEEEEEEEeCCEEEEEeCCCcEEEeceEEecCC
Q 010693 186 GVKFH-KAKVWHVNHQEFESSIVCDDGNEIKASLIVDASG 224 (503)
Q Consensus 186 gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vI~A~G 224 (503)
++.++ ++.|+.|..+++++.|.+. +++++||.||.|.-
T Consensus 366 ~L~IrLnt~V~~I~~~~dGVtV~t~-~~~~~AD~VIVTVP 404 (738)
T PLN02529 366 GVPIFYGKTVDTIKYGNDGVEVIAG-SQVFQADMVLCTVP 404 (738)
T ss_pred cCCEEcCCceeEEEEcCCeEEEEEC-CEEEEcCEEEECCC
Confidence 45687 9999999999888888764 45799999999974
No 497
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=85.11 E-value=1 Score=44.03 Aligned_cols=34 Identities=24% Similarity=0.413 Sum_probs=30.9
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCC
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSP 119 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~ 119 (503)
.-.++|+|.|-.|..+|..|+. .|.+|++++|.+
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~-~G~~V~v~~R~~ 184 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSA-LGARVFVGARSS 184 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHH-CCCEEEEEeCCH
Confidence 3579999999999999999999 999999999754
No 498
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.93 E-value=1.1 Score=46.41 Aligned_cols=33 Identities=30% Similarity=0.409 Sum_probs=30.3
Q ss_pred cEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCC
Q 010693 87 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPL 120 (503)
Q Consensus 87 DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~ 120 (503)
.|+|||.|..|.++|..|.+ .|++|+++|+.+.
T Consensus 5 ~i~iiGlG~~G~slA~~l~~-~G~~V~g~D~~~~ 37 (418)
T PRK00683 5 RVVVLGLGVTGKSIARFLAQ-KGVYVIGVDKSLE 37 (418)
T ss_pred eEEEEEECHHHHHHHHHHHH-CCCEEEEEeCCcc
Confidence 59999999999999999999 9999999997643
No 499
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.79 E-value=3 Score=41.25 Aligned_cols=99 Identities=12% Similarity=0.176 Sum_probs=69.1
Q ss_pred cCcEEEECCCHHHHHHHHHHHccCCCcEEEEcCCCCCCCCCcccchhHhhhhcCchhhhhhccCceEEEecCCcccccCC
Q 010693 85 RYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDR 164 (503)
Q Consensus 85 ~~DvvIVGgGpaGl~~A~~La~~~G~~V~viE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (503)
.-.++|||||-.+.-.|-.++. .|-.+.++=|.... |.
T Consensus 189 Pkr~vvvGaGYIavE~Agi~~g-LgsethlfiR~~kv------------LR----------------------------- 226 (478)
T KOG0405|consen 189 PKRVVVVGAGYIAVEFAGIFAG-LGSETHLFIRQEKV------------LR----------------------------- 226 (478)
T ss_pred CceEEEEccceEEEEhhhHHhh-cCCeeEEEEecchh------------hc-----------------------------
Confidence 3579999999888888888888 88888887654311 00
Q ss_pred CccccCHHHHHHHHHHHHHhCCcEEE-EeEEEEEEEeCCE-EEEEeCCCcEEEeceEEecCCCCccc
Q 010693 165 PYGRVSRNILKTKLLENCVSNGVKFH-KAKVWHVNHQEFE-SSIVCDDGNEIKASLIVDASGFASSF 229 (503)
Q Consensus 165 ~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~-~~v~~~~g~~i~a~~vI~A~G~~s~v 229 (503)
.+ -..+...+.+.....|+.++ ++.++++....++ ..+....|.....|.|+.|+|+....
T Consensus 227 ~F----D~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pnt 289 (478)
T KOG0405|consen 227 GF----DEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKPNT 289 (478)
T ss_pred ch----hHHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCCCCc
Confidence 00 12234455566667899999 9999998877654 45555556555699999999987644
No 500
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=84.67 E-value=1.4 Score=41.46 Aligned_cols=34 Identities=29% Similarity=0.415 Sum_probs=30.7
Q ss_pred CcCcEEEECCCHHHHHHHHHHHccCCC-cEEEEcCC
Q 010693 84 IRYDVIIIGTGPAGLRLAEQVSSRHSV-KVCCVDPS 118 (503)
Q Consensus 84 ~~~DvvIVGgGpaGl~~A~~La~~~G~-~V~viE~~ 118 (503)
....|+|||+|-.|..+|..|++ .|. +++|+|.+
T Consensus 20 ~~~~VlivG~GglGs~va~~La~-~Gvg~i~lvD~D 54 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAA-AGVGKLGLVDDD 54 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCC
Confidence 45789999999999999999999 998 88999864
Done!