BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010694
         (503 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6AFM6|Y930_LEIXX UPF0182 protein Lxx09300 OS=Leifsonia xyli subsp. xyli (strain
           CTCB07) GN=Lxx09300 PE=3 SV=1
          Length = 987

 Score = 32.7 bits (73), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 44/99 (44%), Gaps = 18/99 (18%)

Query: 169 IGKKNENLYDCYTLSRVE-AVP---SSSGAQTSLIQRKINWV-----TLN--PH---GEM 214
           + K ++ LYD   + RV+ A P     S A  ++I  +I WV     T N  P+   G +
Sbjct: 539 VNKDSQILYDRDPIKRVKKAAPYLTMDSQAYPAVIDGRIKWVVDGYTTSNQFPYSHVGSL 598

Query: 215 LQHIGSTHNSKSKQVFKD----RNGFSPTEEVVDGSVTL 249
              I  T   KS   F D    RN    T +  DGSVTL
Sbjct: 599 SDAIADTETPKSAYAFDDINYIRNSVKATVDAYDGSVTL 637


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.132    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 196,026,838
Number of Sequences: 539616
Number of extensions: 8781885
Number of successful extensions: 16494
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 16462
Number of HSP's gapped (non-prelim): 46
length of query: 503
length of database: 191,569,459
effective HSP length: 122
effective length of query: 381
effective length of database: 125,736,307
effective search space: 47905532967
effective search space used: 47905532967
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)