Query 010694
Match_columns 503
No_of_seqs 26 out of 28
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 03:30:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010694.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010694hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12204 DUF3598: Domain of un 99.8 2.7E-19 5.8E-24 172.4 21.7 173 272-491 77-251 (252)
2 PF10907 DUF2749: Protein of u 43.2 6.5 0.00014 33.1 -0.5 23 474-496 44-66 (66)
3 cd02778 MopB_CT_Thiosulfate-R- 34.8 1.2E+02 0.0026 25.6 5.9 49 402-463 28-80 (123)
4 PF12204 DUF3598: Domain of un 34.7 1.1E+02 0.0025 30.4 6.5 59 272-345 194-252 (252)
5 cd02775 MopB_CT Molybdopterin- 33.3 1.5E+02 0.0034 23.7 6.0 51 402-465 21-75 (101)
6 cd02779 MopB_CT_Arsenite-Ox Th 32.8 1.4E+02 0.003 25.5 5.9 56 402-471 31-90 (115)
7 cd00508 MopB_CT_Fdh-Nap-like T 31.7 1.8E+02 0.0039 24.1 6.3 49 402-463 33-85 (120)
8 cd02793 MopB_CT_DMSOR-BSOR-TMA 30.2 1.6E+02 0.0034 25.7 6.0 50 403-465 32-85 (129)
9 cd02786 MopB_CT_3 The MopB_CT_ 28.9 1.9E+02 0.0042 24.2 6.1 51 402-465 29-83 (116)
10 cd02792 MopB_CT_Formate-Dh-Na- 28.2 2.1E+02 0.0045 24.1 6.2 51 402-465 33-87 (122)
11 cd02784 MopB_CT_PHLH The MopB_ 25.3 2.1E+02 0.0046 26.1 6.1 50 403-465 37-90 (137)
12 cd02777 MopB_CT_DMSOR-like The 24.6 2.1E+02 0.0045 24.7 5.7 50 403-465 33-86 (127)
13 cd02781 MopB_CT_Acetylene-hydr 24.5 1.9E+02 0.004 24.8 5.3 54 402-467 31-87 (130)
14 cd02785 MopB_CT_4 The MopB_CT_ 22.0 3.2E+02 0.0069 23.5 6.3 51 402-465 30-84 (124)
15 KOG3243 6,7-dimethyl-8-ribityl 21.7 87 0.0019 30.0 3.0 42 408-462 38-86 (158)
16 cd02790 MopB_CT_Formate-Dh_H F 21.6 3.2E+02 0.007 22.6 6.1 50 402-464 33-86 (116)
No 1
>PF12204 DUF3598: Domain of unknown function (DUF3598); InterPro: IPR022017 Proteins containing this domain are found in bacteria and eukaryotes and contain a barrel structure similar to that seen in the lipocalin superfamily. ; PDB: 2O62_B.
Probab=99.84 E-value=2.7e-19 Score=172.40 Aligned_cols=173 Identities=26% Similarity=0.436 Sum_probs=117.8
Q ss_pred CeeEEecCCccccCCccccccccCCCCcccCCceEEEeeEEeCCceeEEEEEEEEeeCCccceEEEEEEEEEeeeccCCC
Q 010694 272 PGLVFFEDGSYSRGPVDIPVGDVDDSKYYLSPTFKFEQCLVKGCHKRLRIVHTLEFSNGGSDIQIMRVAVYEEQWVSPVN 351 (503)
Q Consensus 272 pGLVfFedGSYSrGP~~I~~ge~D~s~y~~spt~~~EQCLV~g~~kRLRIvhTI~~~nGg~eIqvlRVaVy~EQW~GP~n 351 (503)
..++||++|++|.||..+..+. .+.+|.||+++ .+|+|++|... +.| +|.++.+++|...+.
T Consensus 77 ~~~~~F~~Ga~s~g~~~l~p~~----------~f~~E~~l~~~-d~R~r~v~~yd--~~G---~L~~~~lirE~r~~~-- 138 (252)
T PF12204_consen 77 MRILFFPNGAFSWGSMQLAPFS----------YFGAELGLVHG-DRRLRVVHIYD--PNG---QLDRLTLIREKRGGF-- 138 (252)
T ss_dssp TTEEE-TTS-EEEE-SB-CTTC-----------SEEEEEEEET-TEEEEEEEEE---TTS----EEEEEEEEEEETTS--
T ss_pred ceeEEeCCCCeeecccccCCCC----------cccEEEEEEeC-CccEEEEEEEC--CCC---cEeEEEEEEEecCCC--
Confidence 8899999999999988887733 46789999995 79999999872 222 799999999999887
Q ss_pred ccCCCccccCccccccCCCCCcccceeeeEEEEEeeecccCcccccccCCCCceEEeehhhhhhcCCCCCccccCcchhc
Q 010694 352 IRDESDLEFDIKPFSQRKRTQPSELIGAWKVFEVSATPVFGDELMMQESNGTPYVYLCTETLKKRSLPESSVYFGEEEIL 431 (503)
Q Consensus 352 ~~dqS~~~~~~kpFSqr~Rl~pSeLtGSWkvfevSAT~v~~~~~~~~~~~~~~~VYl~~Et~kk~~lPe~~~~fgeEe~~ 431 (503)
+..+++.|.+.+|.|.|+.-+++.+|-.. +|.+|.. .....+.+...|.++
T Consensus 139 ------------~~~~~~~l~~~~llG~W~G~~~t~~~d~~----------~~~~~~~----~~~~~~~~~~~~~~~--- 189 (252)
T PF12204_consen 139 ------------WAQERPPLTIEQLLGKWQGESVTITPDLY----------SPTIQET----STASIQGSQLWFDEG--- 189 (252)
T ss_dssp ---------------------HHHC-EEEEEEEEEEETT--------------EEEEE----EEEEEETTEEEE-SS---
T ss_pred ------------CcccCCccChhhcCcceEEEEEEecCCCC----------CCcceee----eeccccceeeecccc---
Confidence 56678889999999999999999886442 3333333 111223333444333
Q ss_pred ccCCceEEEeCCceEEEE--EecCCCeEEEEEEEEecCCceEEEEEeeCCCCceeeeeehhh
Q 010694 432 DMQDVTILWLPGGVTGYV--DVGKDGVLCIGVGWYSYEGTNLVMERDYGLDGKLKEVRWKSE 491 (503)
Q Consensus 432 D~~D~~vlwLPggvt~yv--d~~kDG~LcigVGW~~deG~~lvmeRdY~~DGkLkEVr~~te 491 (503)
+..|..+++||+|+.+.+ ++.++..++|+|||+..++..-.|.|.|+.+|.+..++..+|
T Consensus 190 ~~~~~~~~~LPdg~~~~~P~~v~~~~~F~lev~Wl~~~~~~qrlir~Yd~~G~~~s~t~~~e 251 (252)
T PF12204_consen 190 SQADYQLFLLPDGISLSCPKKVKKGKSFFLEVGWLESPNQRQRLIRSYDADGQWVSSTLVTE 251 (252)
T ss_dssp CCG-EEEEE-CCCEEEEEESS--TTS-EEEEEEEEEETTEEEEEEEEE-TTSBEEEEEEEEE
T ss_pred cccCceEEECCCCeEEcCCcccCCCCcEEEEEEEEEcCCeeEEEEEEECCCCcEEEEEEEee
Confidence 234779999999999998 666889999999999999999999999999999999988664
No 2
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=43.17 E-value=6.5 Score=33.08 Aligned_cols=23 Identities=39% Similarity=0.752 Sum_probs=21.7
Q ss_pred EEeeCCCCceeeeeehhhhcccc
Q 010694 474 ERDYGLDGKLKEVRWKSEVKRRW 496 (503)
Q Consensus 474 eRdY~~DGkLkEVr~~teVK~~W 496 (503)
|+.||.|-+|..||-+||+|-||
T Consensus 44 e~ff~~~~~l~~i~~gqem~prw 66 (66)
T PF10907_consen 44 EKFFGGDKDLRDIRGGQEMKPRW 66 (66)
T ss_pred HHHcCCCCCCCCCCCCcccCCCC
Confidence 57899999999999999999999
No 3
>cd02778 MopB_CT_Thiosulfate-R-like The MopB_CT_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Also included in this CD is the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), which has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. The MopB_CT_Thiosulfate-R-like CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=34.76 E-value=1.2e+02 Score=25.60 Aligned_cols=49 Identities=16% Similarity=0.244 Sum_probs=34.9
Q ss_pred CCceEEeehhhhhhcCCCCCccccCcchhcccCCceEEEeC-CceEEEEEecC---CCeEEEEEEE
Q 010694 402 GTPYVYLCTETLKKRSLPESSVYFGEEEILDMQDVTILWLP-GGVTGYVDVGK---DGVLCIGVGW 463 (503)
Q Consensus 402 ~~~~VYl~~Et~kk~~lPe~~~~fgeEe~~D~~D~~vlwLP-ggvt~yvd~~k---DG~LcigVGW 463 (503)
..++||++.++.++.++-+ +|--.+--+ |.+.+.|.++. +|.+.+-.||
T Consensus 28 ~~~~v~i~p~dA~~~gi~~-------------Gd~V~v~s~~G~i~~~v~v~~~v~~g~v~~~~g~ 80 (123)
T cd02778 28 PENTLWINPETAARLGIKD-------------GDRVEVSSARGKVTGKARLTEGIRPDTVFMPHGF 80 (123)
T ss_pred CCCeEEECHHHHHHcCCCC-------------CCEEEEEeCCCcEEEEEEEcCCcCCCEEEEeccC
Confidence 4589999999999999955 232222234 44777777764 6999998886
No 4
>PF12204 DUF3598: Domain of unknown function (DUF3598); InterPro: IPR022017 Proteins containing this domain are found in bacteria and eukaryotes and contain a barrel structure similar to that seen in the lipocalin superfamily. ; PDB: 2O62_B.
Probab=34.74 E-value=1.1e+02 Score=30.44 Aligned_cols=59 Identities=20% Similarity=0.348 Sum_probs=41.3
Q ss_pred CeeEEecCCccccCCccccccccCCCCcccCCceEEEeeEEeCCceeEEEEEEEEeeCCccceEEEEEEEEEee
Q 010694 272 PGLVFFEDGSYSRGPVDIPVGDVDDSKYYLSPTFKFEQCLVKGCHKRLRIVHTLEFSNGGSDIQIMRVAVYEEQ 345 (503)
Q Consensus 272 pGLVfFedGSYSrGP~~I~~ge~D~s~y~~spt~~~EQCLV~g~~kRLRIvhTI~~~nGg~eIqvlRVaVy~EQ 345 (503)
.-+.+++||-|..-|..|..++ -|.||=|=.-...+|.||+-+-.-. | +...+....||
T Consensus 194 ~~~~~LPdg~~~~~P~~v~~~~----------~F~lev~Wl~~~~~~qrlir~Yd~~-G----~~~s~t~~~e~ 252 (252)
T PF12204_consen 194 YQLFLLPDGISLSCPKKVKKGK----------SFFLEVGWLESPNQRQRLIRSYDAD-G----QWVSSTLVTEH 252 (252)
T ss_dssp EEEEE-CCCEEEEEESS--TTS-----------EEEEEEEEEETTEEEEEEEEE-TT-S----BEEEEEEEEEE
T ss_pred ceEEECCCCeEEcCCcccCCCC----------cEEEEEEEEEcCCeeEEEEEEECCC-C----cEEEEEEEeeC
Confidence 4678899999999999998844 5889999888788899998877432 2 45666666654
No 5
>cd02775 MopB_CT Molybdopterin-Binding, C-terminal (MopB_CT) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=33.31 E-value=1.5e+02 Score=23.68 Aligned_cols=51 Identities=22% Similarity=0.271 Sum_probs=35.7
Q ss_pred CCceEEeehhhhhhcCCCCCccccCcchhcccCCceEEEeCCc-eEEEEEecC---CCeEEEEEEEEe
Q 010694 402 GTPYVYLCTETLKKRSLPESSVYFGEEEILDMQDVTILWLPGG-VTGYVDVGK---DGVLCIGVGWYS 465 (503)
Q Consensus 402 ~~~~VYl~~Et~kk~~lPe~~~~fgeEe~~D~~D~~vlwLPgg-vt~yvd~~k---DG~LcigVGW~~ 465 (503)
..+.||+..+++++.++.+ +|--.+.-+.+ +.+.|..+. +|.+.+-.+|-.
T Consensus 21 ~~~~v~~~~~da~~lgl~~-------------Gd~v~v~~~~g~~~~~v~~~~~v~~g~v~~~~~~~~ 75 (101)
T cd02775 21 PEPVVEINPEDAAALGIKD-------------GDLVRVESRRGSVVLRAKVTDGVPPGVVFLPHGWGH 75 (101)
T ss_pred CCCEEEECHHHHHHcCCCC-------------CCEEEEEcCCcEEEEEEEECCCcCCCEEEeeCccCc
Confidence 4589999999999999965 33334455555 666776665 577777777643
No 6
>cd02779 MopB_CT_Arsenite-Ox This CD contains the molybdopterin_binding C-terminal (MopB_CT) region of Arsenite oxidase (Arsenite-Ox) and related proteins. Arsenite oxidase oxidizes arsenite to the less toxic arsenate; it transfers the electrons obtained from the oxidation of arsenite towards the soluble periplasmic electron carriers cytochrome c and/or amicyanin.
Probab=32.76 E-value=1.4e+02 Score=25.47 Aligned_cols=56 Identities=21% Similarity=0.240 Sum_probs=39.8
Q ss_pred CCceEEeehhhhhhcCCCCCccccCcchhcccCCceEEEeCCc-eEEEEEecC---CCeEEEEEEEEecCCceE
Q 010694 402 GTPYVYLCTETLKKRSLPESSVYFGEEEILDMQDVTILWLPGG-VTGYVDVGK---DGVLCIGVGWYSYEGTNL 471 (503)
Q Consensus 402 ~~~~VYl~~Et~kk~~lPe~~~~fgeEe~~D~~D~~vlwLPgg-vt~yvd~~k---DG~LcigVGW~~deG~~l 471 (503)
..++|++..++.+++++-+ +|--.+.-|.| +.+.+.++. .|.+.+-.||- +.+.|.
T Consensus 31 ~~~~v~in~~dA~~lgi~~-------------Gd~V~v~s~~G~i~~~~~~~~~i~~g~v~~p~g~~-~~~~N~ 90 (115)
T cd02779 31 PLPYIEVNPEDAKREGLKN-------------GDLVEVYNDYGSTTAMAYVTNTVKPGQTFMLMAHP-RPGANG 90 (115)
T ss_pred CCCEEEECHHHHHHcCCCC-------------CCEEEEEeCCEEEEEEEEECCCcCCCeEEEEccCC-ccCcCc
Confidence 4689999999999999955 44444555665 667777764 58999999874 333443
No 7
>cd00508 MopB_CT_Fdh-Nap-like This CD includes formate dehydrogenases (Fdh) H and N; nitrate reductases, Nap and Nas; and other related proteins. Formate dehydrogenase H is a component of the anaerobic formate hydrogen lyase complex and catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. Formate dehydrogenase N (alpha subunit) is the major electron donor to the bacterial nitrate respiratory chain and nitrate reductases, Nap and Nas, catalyze the reduction of nitrate to nitrite. This CD (MopB_CT_Fdh-Nap-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=31.71 E-value=1.8e+02 Score=24.13 Aligned_cols=49 Identities=18% Similarity=0.320 Sum_probs=33.9
Q ss_pred CCceEEeehhhhhhcCCCCCccccCcchhcccCCceEEEeCCc-eEEEEEecC---CCeEEEEEEE
Q 010694 402 GTPYVYLCTETLKKRSLPESSVYFGEEEILDMQDVTILWLPGG-VTGYVDVGK---DGVLCIGVGW 463 (503)
Q Consensus 402 ~~~~VYl~~Et~kk~~lPe~~~~fgeEe~~D~~D~~vlwLPgg-vt~yvd~~k---DG~LcigVGW 463 (503)
..+++|++.++.++.++.+ +|.-.+.=+.| +.+.|.++. .|.+.+-.||
T Consensus 33 ~~~~v~inp~dA~~lgi~~-------------Gd~V~v~~~~G~~~~~v~~~~~i~~g~v~~~~~~ 85 (120)
T cd00508 33 PEPFVEIHPEDAARLGIKD-------------GDLVRVSSRRGSVVVRARVTDRVRPGTVFMPFHW 85 (120)
T ss_pred CCCEEEECHHHHHHcCCCC-------------CCEEEEEeCCEEEEEEEEECCCcCCCEEEEeccc
Confidence 3578999999999999955 23222333444 666776664 4888888776
No 8
>cd02793 MopB_CT_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO.This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=30.21 E-value=1.6e+02 Score=25.69 Aligned_cols=50 Identities=12% Similarity=0.158 Sum_probs=35.1
Q ss_pred CceEEeehhhhhhcCCCCCccccCcchhcccCCceEEEeCC-ceEEEEEecC---CCeEEEEEEEEe
Q 010694 403 TPYVYLCTETLKKRSLPESSVYFGEEEILDMQDVTILWLPG-GVTGYVDVGK---DGVLCIGVGWYS 465 (503)
Q Consensus 403 ~~~VYl~~Et~kk~~lPe~~~~fgeEe~~D~~D~~vlwLPg-gvt~yvd~~k---DG~LcigVGW~~ 465 (503)
.++||+..++++++++.+ +|--.+.=+. .+.+.+.++. .|.+.+-.||..
T Consensus 32 ~~~v~i~p~dA~~~gi~~-------------Gd~V~v~s~~G~~~~~~~~~~~v~~g~v~~~~g~w~ 85 (129)
T cd02793 32 REPIRINPADAAARGIAD-------------GDIVRVFNDRGACLAGAVVTDGIMPGVVQLPTGAWY 85 (129)
T ss_pred CCEEEECHHHHHHcCCCC-------------CCEEEEEcCCEEEEEEEEECCCcCCCEEEEccccCc
Confidence 578999999999999955 2322233344 3667777764 589999999643
No 9
>cd02786 MopB_CT_3 The MopB_CT_3 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=28.88 E-value=1.9e+02 Score=24.18 Aligned_cols=51 Identities=22% Similarity=0.447 Sum_probs=36.1
Q ss_pred CCceEEeehhhhhhcCCCCCccccCcchhcccCCceEEEeCC-ceEEEEEecC---CCeEEEEEEEEe
Q 010694 402 GTPYVYLCTETLKKRSLPESSVYFGEEEILDMQDVTILWLPG-GVTGYVDVGK---DGVLCIGVGWYS 465 (503)
Q Consensus 402 ~~~~VYl~~Et~kk~~lPe~~~~fgeEe~~D~~D~~vlwLPg-gvt~yvd~~k---DG~LcigVGW~~ 465 (503)
..++||++.+++++.++-+ +|--.+.=+. .+.+.+.++. +|.+.+-.||..
T Consensus 29 ~~~~v~i~p~dA~~lgi~~-------------Gd~V~v~s~~G~~~~~v~~~~~i~~g~v~~~~g~~~ 83 (116)
T cd02786 29 GEPTLLIHPADAAARGIAD-------------GDLVVVFNDRGSVTLRAKVTDDVPPGVVVAEGGWWR 83 (116)
T ss_pred CCCEEEECHHHHHHcCCCC-------------CCEEEEEcCCeEEEEEEEECCCCCCCEEEeeccccc
Confidence 3579999999999999955 2322233333 3677777764 699999999865
No 10
>cd02792 MopB_CT_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. This CD (MopB_CT_Formate-Dh-Na-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=28.20 E-value=2.1e+02 Score=24.07 Aligned_cols=51 Identities=18% Similarity=0.204 Sum_probs=36.1
Q ss_pred CCceEEeehhhhhhcCCCCCccccCcchhcccCCceEEEeCCc-eEEEEEecC---CCeEEEEEEEEe
Q 010694 402 GTPYVYLCTETLKKRSLPESSVYFGEEEILDMQDVTILWLPGG-VTGYVDVGK---DGVLCIGVGWYS 465 (503)
Q Consensus 402 ~~~~VYl~~Et~kk~~lPe~~~~fgeEe~~D~~D~~vlwLPgg-vt~yvd~~k---DG~LcigVGW~~ 465 (503)
..++|+++.++.++.+|-+ +|--.+.=|.| +.+.|.++. +|.+.+-.||-.
T Consensus 33 ~~~~v~i~p~dA~~lgi~~-------------Gd~V~v~s~~G~~~~~v~v~~~i~~g~v~~~~g~~~ 87 (122)
T cd02792 33 PEMFVEISPELAAERGIKN-------------GDMVWVSSPRGKIKVKALVTDRVKPHEVGIPYHWGG 87 (122)
T ss_pred CCcEEEECHHHHHHcCCCC-------------CCEEEEEcCCceEEEEEEECCCcCCCEEEEecccCc
Confidence 4578999999999999944 33322334554 677777764 588888888754
No 11
>cd02784 MopB_CT_PHLH The MopB_CT_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding proteins. This CD is of the PHLH region homologous to the conserved molybdopterin-binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=25.32 E-value=2.1e+02 Score=26.14 Aligned_cols=50 Identities=18% Similarity=0.206 Sum_probs=35.9
Q ss_pred CceEEeehhhhhhcCCCCCccccCcchhcccCCceEEEeCCc-eEEEEEecC---CCeEEEEEEEEe
Q 010694 403 TPYVYLCTETLKKRSLPESSVYFGEEEILDMQDVTILWLPGG-VTGYVDVGK---DGVLCIGVGWYS 465 (503)
Q Consensus 403 ~~~VYl~~Et~kk~~lPe~~~~fgeEe~~D~~D~~vlwLPgg-vt~yvd~~k---DG~LcigVGW~~ 465 (503)
.++|+++.++.+++++-+ +|.-.+.-|.| +.+.+.+.. .|.+.+..||=.
T Consensus 37 ~~~v~InP~dA~~lGI~d-------------GD~V~V~s~~G~i~~~a~vt~~i~pgvV~i~~G~G~ 90 (137)
T cd02784 37 DNAALVSPRTAEALGLLQ-------------GDVVRIRRGGRTIELPVWIQPGHAEGVVLLALGYGR 90 (137)
T ss_pred CceEEECHHHHHHcCCCC-------------CCEEEEEeCCeEEEEEEEECCCcCCCEEEEecccCc
Confidence 578999999999999944 34333444554 666666664 689999999855
No 12
>cd02777 MopB_CT_DMSOR-like The MopB_CT_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB hom
Probab=24.64 E-value=2.1e+02 Score=24.68 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=34.2
Q ss_pred CceEEeehhhhhhcCCCCCccccCcchhcccCCceEEEeCCc-eEEEEEecC---CCeEEEEEEEEe
Q 010694 403 TPYVYLCTETLKKRSLPESSVYFGEEEILDMQDVTILWLPGG-VTGYVDVGK---DGVLCIGVGWYS 465 (503)
Q Consensus 403 ~~~VYl~~Et~kk~~lPe~~~~fgeEe~~D~~D~~vlwLPgg-vt~yvd~~k---DG~LcigVGW~~ 465 (503)
.++||++.+++++.++.+ +|--.+.=+.| +.+.+.++. +|.+.+-.||..
T Consensus 33 ~~~v~i~p~dA~~lgi~~-------------Gd~V~v~s~~g~i~~~v~i~~~v~~g~v~~~~g~~~ 86 (127)
T cd02777 33 REPVWINPLDAAARGIKD-------------GDIVRVFNDRGAVLAGARVTDRIMPGVVALPEGAWY 86 (127)
T ss_pred CCeEEECHHHHHHcCCCC-------------CCEEEEEcCCeEEEEEEEECCCcCCCEEEeCccccc
Confidence 467999999999999955 23222333444 666776654 688888888644
No 13
>cd02781 MopB_CT_Acetylene-hydratase The MopB_CT_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=24.51 E-value=1.9e+02 Score=24.79 Aligned_cols=54 Identities=22% Similarity=0.278 Sum_probs=36.6
Q ss_pred CCceEEeehhhhhhcCCCCCccccCcchhcccCCceEEEeCCceEEEEEecC---CCeEEEEEEEEecC
Q 010694 402 GTPYVYLCTETLKKRSLPESSVYFGEEEILDMQDVTILWLPGGVTGYVDVGK---DGVLCIGVGWYSYE 467 (503)
Q Consensus 402 ~~~~VYl~~Et~kk~~lPe~~~~fgeEe~~D~~D~~vlwLPggvt~yvd~~k---DG~LcigVGW~~de 467 (503)
..++||++.+++++.++.+ |+. +.|.-==|.+.+.+.++. .|.+.+-.||...+
T Consensus 31 ~~~~v~inp~dA~~~gi~~-----Gd~-------V~v~s~~G~~~~~v~v~~~i~~g~v~~~~g~~~~~ 87 (130)
T cd02781 31 PDPVAEINPETAAKLGIAD-----GDW-------VWVETPRGRARQKARLTPGIRPGVVRAEHGWWYPE 87 (130)
T ss_pred CCCEEEECHHHHHHcCCCC-----CCE-------EEEECCCCEEEEEEEECCCCCCCEEEEeccccccc
Confidence 3578999999999999965 322 122222244666776665 59999999986543
No 14
>cd02785 MopB_CT_4 The MopB_CT_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=22.04 E-value=3.2e+02 Score=23.46 Aligned_cols=51 Identities=24% Similarity=0.399 Sum_probs=35.2
Q ss_pred CCceEEeehhhhhhcCCCCCccccCcchhcccCCceEEEeCC-ceEEEEEecC---CCeEEEEEEEEe
Q 010694 402 GTPYVYLCTETLKKRSLPESSVYFGEEEILDMQDVTILWLPG-GVTGYVDVGK---DGVLCIGVGWYS 465 (503)
Q Consensus 402 ~~~~VYl~~Et~kk~~lPe~~~~fgeEe~~D~~D~~vlwLPg-gvt~yvd~~k---DG~LcigVGW~~ 465 (503)
..++|+++.++.++.++-+ | |--.+.=|. .+.+.+.++. +|.+.+-.||-.
T Consensus 30 ~~~~v~i~p~dA~~~gi~~-----G--------d~V~v~s~~G~i~~~a~~~~~v~~g~v~~~~g~~~ 84 (124)
T cd02785 30 PEPRVKINPIDAAARGIAH-----G--------DLVEVYNDRGSVVCKAKVDDGIQPGVVTAEQGWWS 84 (124)
T ss_pred CCCeEEECHHHHHHcCCCC-----C--------CEEEEEeCCCEEEEEEEECCCcCCCEEEeecccCc
Confidence 3579999999999999955 2 222222333 3666776664 689999999843
No 15
>KOG3243 consensus 6,7-dimethyl-8-ribityllumazine synthase [Coenzyme transport and metabolism]
Probab=21.73 E-value=87 Score=30.04 Aligned_cols=42 Identities=43% Similarity=0.695 Sum_probs=29.1
Q ss_pred eehhhhhhcCCCCCccccCcchhcccCCceEEEeCCceEE------EEEecC-CCeEEEEEE
Q 010694 408 LCTETLKKRSLPESSVYFGEEEILDMQDVTILWLPGGVTG------YVDVGK-DGVLCIGVG 462 (503)
Q Consensus 408 l~~Et~kk~~lPe~~~~fgeEe~~D~~D~~vlwLPggvt~------yvd~~k-DG~LcigVG 462 (503)
=.-||+++.+.-+ .|.-|.|.||..-. .++-++ |-.+||||.
T Consensus 38 GAiEtm~~~~V~e-------------enI~ie~VPGS~Elp~g~~~~~~r~~~daVi~IGvl 86 (158)
T KOG3243|consen 38 GAIETMKKYSVRE-------------ENIEIEWVPGSFELPVGAQNLGKRGKFDAVICIGVL 86 (158)
T ss_pred HHHHHHHHhCcch-------------hceeEEEcCCceeccHHHHhhhhccCceEEEEEEEE
Confidence 3459999988622 45679999998643 344443 679999985
No 16
>cd02790 MopB_CT_Formate-Dh_H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. This CD (MopB_CT_Formate-Dh_H) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=21.64 E-value=3.2e+02 Score=22.64 Aligned_cols=50 Identities=18% Similarity=0.222 Sum_probs=34.5
Q ss_pred CCceEEeehhhhhhcCCCCCccccCcchhcccCCceEEEeCCc-eEEEEEecC---CCeEEEEEEEE
Q 010694 402 GTPYVYLCTETLKKRSLPESSVYFGEEEILDMQDVTILWLPGG-VTGYVDVGK---DGVLCIGVGWY 464 (503)
Q Consensus 402 ~~~~VYl~~Et~kk~~lPe~~~~fgeEe~~D~~D~~vlwLPgg-vt~yvd~~k---DG~LcigVGW~ 464 (503)
..+++|+..++.++.++-+ +|--.+.=+.| +.+.+.++. .|.+.+-.||.
T Consensus 33 ~~~~v~in~~dA~~lgi~~-------------Gd~V~v~~~~G~~~~~v~i~~~i~~g~v~~~~g~~ 86 (116)
T cd02790 33 PEEYVEINPEDAKRLGIED-------------GEKVRVSSRRGSVEVRARVTDRVPEGVVFMPFHFA 86 (116)
T ss_pred CCcEEEECHHHHHHcCCCC-------------CCEEEEEcCCEEEEEEEEECCCcCCCEEEEecCcC
Confidence 4678999999999999844 33323334444 566666654 58888888874
Done!