Query 010694
Match_columns 503
No_of_seqs 26 out of 28
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 12:17:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010694.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010694hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o62_A Hypothetical protein; s 100.0 5.1E-27 1.8E-31 227.1 24.9 190 271-493 68-269 (270)
2 2o62_A Hypothetical protein; s 27.6 93 0.0032 30.2 6.0 58 273-345 211-268 (270)
3 3d8c_A Hypoxia-inducible facto 17.8 1.5E+02 0.005 29.1 5.2 38 431-470 265-302 (349)
4 2qqr_A JMJC domain-containing 15.8 1.1E+02 0.0037 26.9 3.3 60 273-343 35-112 (118)
5 2in5_A Hypothetical lipoprotei 15.6 2.1E+02 0.0072 26.6 5.5 53 303-366 147-199 (207)
6 2fr2_A Hypothetical protein RV 13.2 6.9E+02 0.024 22.6 8.1 88 374-474 13-109 (172)
7 2m0o_A PHD finger protein 1; t 12.5 1.3E+02 0.0045 25.1 2.8 21 293-313 36-60 (79)
8 2a13_A AT1G79260; structural g 11.3 8.2E+02 0.028 21.9 9.5 87 374-473 24-117 (166)
9 2e5q_A PHD finger protein 19; 8.8 1.1E+02 0.0037 24.7 1.0 20 294-313 18-41 (63)
10 1qwr_A Mannose-6-phosphate iso 8.3 3E+02 0.01 26.8 4.1 45 438-491 167-217 (319)
No 1
>2o62_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.75A {Nostoc punctiforme} SCOP: b.60.1.9 b.60.1.9
Probab=99.95 E-value=5.1e-27 Score=227.11 Aligned_cols=190 Identities=22% Similarity=0.355 Sum_probs=165.0
Q ss_pred CCeeEEecCCccccCCccccccccCCCCcccCCceEEEeeEEeCCceeEEEEEEEEeeCCccceEEEEEEEEEeeeccCC
Q 010694 271 EPGLVFFEDGSYSRGPVDIPVGDVDDSKYYLSPTFKFEQCLVKGCHKRLRIVHTLEFSNGGSDIQIMRVAVYEEQWVSPV 350 (503)
Q Consensus 271 epGLVfFedGSYSrGP~~I~~ge~D~s~y~~spt~~~EQCLV~g~~kRLRIvhTI~~~nGg~eIqvlRVaVy~EQW~GP~ 350 (503)
.++++||++|+||.||..+..+. .+.+|.||++ +++|+|++|... . +-++.++.+++|.+.++.
T Consensus 68 ~~~i~fF~~gafswg~~ql~p~~----------~f~~E~~l~~-~~~R~R~v~~yd-~----~G~L~~~tlirE~r~~~~ 131 (270)
T 2o62_A 68 GGGLLFFENGSFSEGLIQLGPFS----------EFGGELAFVH-ENRRLRLVQLFD-R----NGHLNGLTLIREHLAGTP 131 (270)
T ss_dssp CTTEEECTTSCEEECCSBCBTTB----------CSEEEEEEEE-TTEEEEEEEEEC-T----TSCEEEEEEEEEEETTSC
T ss_pred CcceEEcCCCCeEEeeeccCCcc----------eeeEEEEEEe-CCceEEEEEEEC-C----CCcEEEEEEEEEccCCCC
Confidence 45789999999999988777732 5789999999 699999999994 2 238999999999998774
Q ss_pred CccCCCccccCccccccCCCCCcccceeeeEEEEEeeecccCcccccc-------cCCCCceEEee---hhhhhhcCCCC
Q 010694 351 NIRDESDLEFDIKPFSQRKRTQPSELIGAWKVFEVSATPVFGDELMMQ-------ESNGTPYVYLC---TETLKKRSLPE 420 (503)
Q Consensus 351 n~~dqS~~~~~~kpFSqr~Rl~pSeLtGSWkvfevSAT~v~~~~~~~~-------~~~~~~~VYl~---~Et~kk~~lPe 420 (503)
.+++++|++++|.|.|+...++++|......+.. .+++.+++|+| +++..+..+++
T Consensus 132 --------------~~e~p~l~~~~llG~W~G~~~t~~~d~~~~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 197 (270)
T 2o62_A 132 --------------VAERPLLQINDLLGEWRGQAVTIYRDLRPPDIYSTTLKIQLDDAGRLMQSTSFGERTITSTATIKG 197 (270)
T ss_dssp --------------CCCCCCCCGGGTCEEEEEEEEEEETTCCCCEEEEEEEEEEECTTSCEEEEEEETTEEEEEEEEEET
T ss_pred --------------cccCCCCChHHhcCcceeEEEEecCCCCCCcccceEEEEEEcCCCceEEEeecCCeeEEEeeeccC
Confidence 2568899999999999999999999888654321 24688999999 77777888999
Q ss_pred CccccCcchhcccCCceEEEeCCceE--EEEEecCCCeEEEEEEEEecCCceEEEEEeeCCCCceeeeeehhhhc
Q 010694 421 SSVYFGEEEILDMQDVTILWLPGGVT--GYVDVGKDGVLCIGVGWYSYEGTNLVMERDYGLDGKLKEVRWKSEVK 493 (503)
Q Consensus 421 ~~~~fgeEe~~D~~D~~vlwLPggvt--~yvd~~kDG~LcigVGW~~deG~~lvmeRdY~~DGkLkEVr~~teVK 493 (503)
+.++|+++ +++|..++|||+|++ |.++++.+..++|+|||+..+|....|.|.|+.+|.+..++..+|+|
T Consensus 198 ~~~~F~~~---~~~~~~~~~LPdG~s~~~P~~v~~~~~F~lev~Wl~~~~~~qrlir~Y~~~G~~~s~tl~~e~k 269 (270)
T 2o62_A 198 SIVLFDQD---PEKQVQVLLLPDGASATSPLKVQLRQPLFLEAGWLIQSDLRQRMIRSYNDKGEWVSLTLVTEER 269 (270)
T ss_dssp TEEEECSC---TTCCEEEEECGGGEEEEEESSCCTTSCEEEEEEEEEETTEEEEEEEEECTTSBEEEEEEEEEEE
T ss_pred CeeEecCC---cccceeEEECCCCeeEcCchhhcCCCcEEEEEEEEeCCCeeEEEEEEeCCCCcEEEEEEEEEEe
Confidence 99999877 447889999999987 78888899999999999999999999999999999999999999988
No 2
>2o62_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.75A {Nostoc punctiforme} SCOP: b.60.1.9 b.60.1.9
Probab=27.57 E-value=93 Score=30.25 Aligned_cols=58 Identities=14% Similarity=0.335 Sum_probs=43.6
Q ss_pred eeEEecCCccccCCccccccccCCCCcccCCceEEEeeEEeCCceeEEEEEEEEeeCCccceEEEEEEEEEee
Q 010694 273 GLVFFEDGSYSRGPVDIPVGDVDDSKYYLSPTFKFEQCLVKGCHKRLRIVHTLEFSNGGSDIQIMRVAVYEEQ 345 (503)
Q Consensus 273 GLVfFedGSYSrGP~~I~~ge~D~s~y~~spt~~~EQCLV~g~~kRLRIvhTI~~~nGg~eIqvlRVaVy~EQ 345 (503)
-+.+++||-|...|..|..+ ..+.||-|=.-...+|.||+-+-... | +...+....|+
T Consensus 211 ~~~~LPdG~s~~~P~~v~~~----------~~F~lev~Wl~~~~~~qrlir~Y~~~-G----~~~s~tl~~e~ 268 (270)
T 2o62_A 211 QVLLLPDGASATSPLKVQLR----------QPLFLEAGWLIQSDLRQRMIRSYNDK-G----EWVSLTLVTEE 268 (270)
T ss_dssp EEEECGGGEEEEEESSCCTT----------SCEEEEEEEEEETTEEEEEEEEECTT-S----BEEEEEEEEEE
T ss_pred eEEECCCCeeEcCchhhcCC----------CcEEEEEEEEeCCCeeEEEEEEeCCC-C----cEEEEEEEEEE
Confidence 57888999999999999664 46899999888788899998877433 2 34555555553
No 3
>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...
Probab=17.84 E-value=1.5e+02 Score=29.11 Aligned_cols=38 Identities=16% Similarity=0.216 Sum_probs=30.7
Q ss_pred cccCCceEEEeCCceEEEEEecCCCeEEEEEEEEecCCce
Q 010694 431 LDMQDVTILWLPGGVTGYVDVGKDGVLCIGVGWYSYEGTN 470 (503)
Q Consensus 431 ~D~~D~~vlwLPggvt~yvd~~kDG~LcigVGW~~deG~~ 470 (503)
+..+| +|.+|.+-|=+|..-.|+.++|.|.+.++....
T Consensus 265 l~pGD--~LyiP~gWwH~V~~l~d~~~sisvn~w~~~~~~ 302 (349)
T 3d8c_A 265 VGPGD--VLYIPMYWWHHIESLLNGGITITVNFWYKGAPT 302 (349)
T ss_dssp ECTTC--EEEECTTCEEEEEECTTSCCEEEEEEEEECCCC
T ss_pred ECCCC--EEEECCCCcEEEEEcCCCCcEEEEEEEcCCCCC
Confidence 34556 999999999999888777899999988776543
No 4
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=15.78 E-value=1.1e+02 Score=26.93 Aligned_cols=60 Identities=28% Similarity=0.360 Sum_probs=35.3
Q ss_pred eeEEecCCcccc--CCccccccc----------------cCCCCcccCCceEEEeeEEeCCceeEEEEEEEEeeCCccce
Q 010694 273 GLVFFEDGSYSR--GPVDIPVGD----------------VDDSKYYLSPTFKFEQCLVKGCHKRLRIVHTLEFSNGGSDI 334 (503)
Q Consensus 273 GLVfFedGSYSr--GP~~I~~ge----------------~D~s~y~~spt~~~EQCLV~g~~kRLRIvhTI~~~nGg~eI 334 (503)
=.|-|+|||||. =|.||..=+ ++|+ ++--|-..|+ ..++.-|++|..|. .+
T Consensus 35 y~V~F~DgS~s~dl~peDIvs~dc~~~GpP~~G~~V~V~W~DG--------~~y~a~f~g~--~~~~~Y~V~feDgs-~~ 103 (118)
T 2qqr_A 35 YEVNFDDGSFSDNLYPEDIVSQDCLQFGPPAEGEVVQVRWTDG--------QVYGAKFVAS--HPIQMYQVEFEDGS-QL 103 (118)
T ss_dssp EEEEETTSCEEEEECGGGBCSSCHHHHCCCCTTCEEEEECTTS--------CEEEEEEEEE--EEEEEEEEEETTSC-EE
T ss_pred EEEEcCCCCccCCCCHhhcccccccccCCCCCCCEEEEEcCCC--------CEeeeEEece--eEEEEEEEEECCCC-EE
Confidence 357899999998 556665511 2222 3344444443 34566788898774 45
Q ss_pred EEEEEEEEE
Q 010694 335 QIMRVAVYE 343 (503)
Q Consensus 335 qvlRVaVy~ 343 (503)
.+.|=.+|.
T Consensus 104 ~~kR~~iyt 112 (118)
T 2qqr_A 104 VVKRDDVYT 112 (118)
T ss_dssp EECGGGEEE
T ss_pred EEcHHHeec
Confidence 555544443
No 5
>2in5_A Hypothetical lipoprotein YMCC; mostly beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Escherichia coli K12} SCOP: b.177.1.1
Probab=15.60 E-value=2.1e+02 Score=26.63 Aligned_cols=53 Identities=15% Similarity=-0.026 Sum_probs=30.3
Q ss_pred CceEEEeeEEeCCceeEEEEEEEEeeCCccceEEEEEEEEEeeeccCCCccCCCccccCccccc
Q 010694 303 PTFKFEQCLVKGCHKRLRIVHTLEFSNGGSDIQIMRVAVYEEQWVSPVNIRDESDLEFDIKPFS 366 (503)
Q Consensus 303 pt~~~EQCLV~g~~kRLRIvhTI~~~nGg~eIqvlRVaVy~EQW~GP~n~~dqS~~~~~~kpFS 366 (503)
.+...|+|-+.+-. .+...+.=+..+.. + -|..+||.||.-.-..- .-+|||+
T Consensus 147 ~~~~~E~~~~~~~~--~~~~N~YWvd~~sG--~----VvqSrQ~lgP~~~~i~~---~~Lkp~~ 199 (207)
T 2in5_A 147 CNVWQEEVTSTRPE--KQWQNTFWVDSATG--Q----VRQSRQMLGAGVIPVEM---TFLKPAP 199 (207)
T ss_dssp EEEEEEEEEETTTT--EEEEEEEEEETTTC--C----EEEEEEESSSSCSEEEE---EECSCCC
T ss_pred EEEEEEEEEecCCC--CcEEEEEEEECCCC--c----EEEEEEecCCCCceEEE---EEecchh
Confidence 45667888886543 33444454553211 1 27899999996543322 2366775
No 6
>2fr2_A Hypothetical protein RV2717C; beta barrel, fatty acid binding, structural genomics, PSI, P structure initiative; 1.50A {Mycobacterium tuberculosis} SCOP: b.60.1.8
Probab=13.20 E-value=6.9e+02 Score=22.59 Aligned_cols=88 Identities=19% Similarity=0.260 Sum_probs=45.3
Q ss_pred ccceeeeEEEEEeeecc-----cCcccccccCCCCceEEeehhhhhhcCCCCCccccCcchhcccCCceEEEe--CCceE
Q 010694 374 SELIGAWKVFEVSATPV-----FGDELMMQESNGTPYVYLCTETLKKRSLPESSVYFGEEEILDMQDVTILWL--PGGVT 446 (503)
Q Consensus 374 SeLtGSWkvfevSAT~v-----~~~~~~~~~~~~~~~VYl~~Et~kk~~lPe~~~~fgeEe~~D~~D~~vlwL--Pggvt 446 (503)
.-|.|.|+...+-..|- |.+...|+.-.+|.+-|. +.+-. + +...-|+.| .| +|+ |.+..
T Consensus 13 a~LlG~W~G~G~~~~Pt~~~~~y~Eei~fs~~G~p~L~Y~-s~~w~---~-~~~~p~h~E-------~G-fwr~~~~g~v 79 (172)
T 2fr2_A 13 SPLLGSWAGRGAGKYPTIRPFEYLEEVVFAHVGKPFLTYT-QQTRA---V-ADGKPLHSE-------TG-YLRVCRPGCV 79 (172)
T ss_dssp GGGCEEEEEEEEECCTTSCCEEEEEEEEEEECSSSEEEEE-EEEEE---T-TTCCEEEEE-------EE-EEEESSTTEE
T ss_pred ceeeEEEEeeeEEeCCCCCceeeEEEEEEEECCCCeEEEE-EEEEE---C-CCCCcceEe-------eE-EEEECCCCcE
Confidence 34899999876544442 223333344445544444 33322 2 211223333 34 566 44433
Q ss_pred EEEEecCCCeEEEEEEEE--ecCCceEEEE
Q 010694 447 GYVDVGKDGVLCIGVGWY--SYEGTNLVME 474 (503)
Q Consensus 447 ~yvd~~kDG~LcigVGW~--~deG~~lvme 474 (503)
.-+=+.-.|+..|-.|.+ .+.+..|.+.
T Consensus 80 e~~la~p~G~~ei~~G~~~~~~~~~~~~l~ 109 (172)
T 2fr2_A 80 ELVLAHPSGITEIEVGTYSVTGDVIELELS 109 (172)
T ss_dssp EEEEEETTTEEEEEEEEEEEETTEEEEEEE
T ss_pred EEEEEeCCceEEEEEEEeecCCCccEEEEE
Confidence 333345678888999988 4555555443
No 7
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=12.47 E-value=1.3e+02 Score=25.13 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=16.5
Q ss_pred ccCCCCcccCCceEEE----eeEEe
Q 010694 293 DVDDSKYYLSPTFKFE----QCLVK 313 (503)
Q Consensus 293 e~D~s~y~~spt~~~E----QCLV~ 313 (503)
.+.|+.||+.+..++. +|||+
T Consensus 36 rwsDGlfYLGTI~kV~~~~e~ClV~ 60 (79)
T 2m0o_A 36 RWTDGLLYLGTIKKVDSAREVCLVQ 60 (79)
T ss_dssp CCTTSCCCEEEEEEEETTTTEEEEE
T ss_pred EecCCCEEeEEEEEeccCCCEEEEE
Confidence 3677778888877776 89999
No 8
>2a13_A AT1G79260; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; HET: MSE; 1.32A {Arabidopsis thaliana} SCOP: b.60.1.8 PDB: 2q4n_A 3emm_A*
Probab=11.32 E-value=8.2e+02 Score=21.91 Aligned_cols=87 Identities=24% Similarity=0.407 Sum_probs=48.0
Q ss_pred ccceeeeEEEEEeeecc-----cCcccccccCCCCceEEeehhhhhhcCCCCCccccCcchhcccCCceEEEe--CCceE
Q 010694 374 SELIGAWKVFEVSATPV-----FGDELMMQESNGTPYVYLCTETLKKRSLPESSVYFGEEEILDMQDVTILWL--PGGVT 446 (503)
Q Consensus 374 SeLtGSWkvfevSAT~v-----~~~~~~~~~~~~~~~VYl~~Et~kk~~lPe~~~~fgeEe~~D~~D~~vlwL--Pggvt 446 (503)
.-|.|.|+...+-..|- |.+...|+.-.+|.+-|. +.+-+ + +...-|+.| .| +|+ |.+..
T Consensus 24 a~L~G~W~G~G~~~~P~~~~~~y~Eei~fs~~G~p~L~Y~-~~~w~---~-~~~~p~h~E-------~G-ywr~~p~~~v 90 (166)
T 2a13_A 24 SYLLGTWRGQGEGEYPTIPSFRYGEEIRFSHSGKPVIAYT-QKTWK---L-ESGAPMHAE-------SG-YFRPRPDGSI 90 (166)
T ss_dssp GGGCEEEEEEEEEEETTEEEEEEEEEEEEECCSSSCEEEE-EEEEC---T-TTCCEEEEE-------EE-EEEECTTSEE
T ss_pred ceeeEEEEeeeEEeCCCCCceeeEEEEEEEeCCCCeEEEE-EEEEE---C-CCCCcceEe-------eE-EEEECCCCcE
Confidence 34899999876544442 334444455556655554 33322 2 222223433 34 566 44443
Q ss_pred EEEEecCCCeEEEEEEEEecCCceEEE
Q 010694 447 GYVDVGKDGVLCIGVGWYSYEGTNLVM 473 (503)
Q Consensus 447 ~yvd~~kDG~LcigVGW~~deG~~lvm 473 (503)
.-+=+.-.|+..|-.|.+..+...+.+
T Consensus 91 e~~la~p~G~~ei~~G~~~~~~~~~~l 117 (166)
T 2a13_A 91 EVVIAQSTGLVEVQKGTYNVDEQSIKL 117 (166)
T ss_dssp EEEEEETTSCEEEEEEEEETTTTEEEE
T ss_pred EEEEEeCCceEEEEEEEecCCceEEEE
Confidence 344455678888888988777755543
No 9
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=8.75 E-value=1.1e+02 Score=24.69 Aligned_cols=20 Identities=35% Similarity=0.660 Sum_probs=13.4
Q ss_pred cCCCCcccCCceEE----EeeEEe
Q 010694 294 VDDSKYYLSPTFKF----EQCLVK 313 (503)
Q Consensus 294 ~D~s~y~~spt~~~----EQCLV~ 313 (503)
+-|..||+.+..++ |.|||.
T Consensus 18 WsDGlfYlgtV~kV~~~~~~ClV~ 41 (63)
T 2e5q_A 18 WTDGLYYLGKIKRVSSSKQSCLVT 41 (63)
T ss_dssp CTTSCEEEEEECCCCSTTSEEEEE
T ss_pred ecCCCEEEEEEEEEecCCCEEEEE
Confidence 45566666665554 679998
No 10
>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3
Probab=8.30 E-value=3e+02 Score=26.80 Aligned_cols=45 Identities=20% Similarity=0.423 Sum_probs=31.5
Q ss_pred EEEeCCc-eEEEEEecCCCeEEEEEEEEecCCceEEEEEe--e---CCCCceeeeeehhh
Q 010694 438 ILWLPGG-VTGYVDVGKDGVLCIGVGWYSYEGTNLVMERD--Y---GLDGKLKEVRWKSE 491 (503)
Q Consensus 438 vlwLPgg-vt~yvd~~kDG~LcigVGW~~deG~~lvmeRd--Y---~~DGkLkEVr~~te 491 (503)
.+.||-| +=||+ .|.||+++-+.||- |. |. | |.||++|++-....
T Consensus 167 ~~~ipaGt~HA~~----~G~~~~Eiq~~SD~----t~-R~yDy~R~g~~g~pr~lhv~~~ 217 (319)
T 1qwr_A 167 FYYVPSGTLHALC----KGALVLETQQNSDA----TY-RVYDYDRLDSNGSPRELHFAKA 217 (319)
T ss_dssp EEEECTTCCEEEC----SSEEEEEEEESCCC----CE-EEECTTCBCTTSCBCCCCHHHH
T ss_pred EEEcCCCCceEec----CCCeEEEEEeCCcc----EE-EcccccccCCCCCcccCCHHHH
Confidence 5666666 56775 48999999999994 33 54 4 56688888755443
Done!