BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010696
(503 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 535 bits (1379), Expect = e-152, Method: Compositional matrix adjust.
Identities = 248/478 (51%), Positives = 341/478 (71%), Gaps = 7/478 (1%)
Query: 33 LRIQLKKRQLGINTINAARLITKNE------VHNRFNHPKADVVYLNNYLDAQYYGEIGI 86
+RI LKKR + N+ A L E + + + D+V L NY++AQY+GEIG+
Sbjct: 1 VRIALKKRPIDRNSRVATGLSGGEEQPLLSGANPLRSEEEGDIVALKNYMNAQYFGEIGV 60
Query: 87 GSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKI-VPCKIHYGSGQ 145
G+PPQ F+V+FDTGSSNLWVPS+KC FSI+CYLHSRY+A S TY K P I YG+G
Sbjct: 61 GTPPQKFTVIFDTGSSNLWVPSAKCYFSIACYLHSRYKAGASSTYKKNGKPAAIQYGTGS 120
Query: 146 ISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYN 205
I+G+FS+D+V +GD+++KDQEF+E TKE + FL +FDGILGLGF++I+ G A P+WY
Sbjct: 121 IAGYFSEDSVTVGDLVVKDQEFIEATKEPGITFLVAKFDGILGLGFKEISVGKAVPVWYK 180
Query: 206 MVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDI 265
M+ QG +S +FS WLN+ + GGEIIFGG D +H+ G H YVP+T+KGYWQ +GD+
Sbjct: 181 MIEQGLVSDPVFSFWLNRHVDEGEGGEIIFGGMDPKHYVGEHTYVPVTQKGYWQFDMGDV 240
Query: 266 LIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAEGIVSMQCKTVVFEYGNMI 325
L+ STGFC GC AI DSGTS+LAGPT ++ +IN IGA G+VS +CKT+V +YG I
Sbjct: 241 LVGGKSTGFCAGGCAAIADSGTSLLAGPTAIITEINEKIGAAGVVSQECKTIVSQYGQQI 300
Query: 326 WEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVF 385
+ L++ QP+ +CS +GLC ++G+ +S GI +VV + + + +C+ CEM V
Sbjct: 301 LDLLLAETQPKKICSQVGLCTFDGTRGVSAGIRSVVDDEPVKSNGLRADPMCSACEMAVV 360
Query: 386 WIQMQLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPE 445
W+Q QL Q KT++ I Y ++LC LP+PMG+S ++C + SMP + FTIG + F L PE
Sbjct: 361 WMQNQLAQNKTQDLILDYVNQLCNRLPSPMGESAVDCGSLGSMPDIEFTIGGKKFALKPE 420
Query: 446 QYIFKIEEGHSTICISGFIALDVPPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEAA 503
+YI K+ EG + CISGF A+D+PPP+GPLW+LGD+F+ YHTVFD+G L+IGFA+AA
Sbjct: 421 EYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYHTVFDYGKLRIGFAKAA 478
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 275 bits (704), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 133/239 (55%), Positives = 170/239 (71%), Gaps = 5/239 (2%)
Query: 69 VVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLS 128
VV L N D Y+GEIGIG+PPQ F+V+FDTGSS LWVPSSKC+ S +C HS Y + S
Sbjct: 4 VVALTNDRDTSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAHSMYESSDS 63
Query: 129 RTYTKI-VPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGIL 187
TY + I YG+G I+GFFSQD+V IGD+++K+Q+F+E T E FL FDGIL
Sbjct: 64 STYKENGTFGAIIYGTGSITGFFSQDSVTIGDLVVKEQDFIEATDEADNVFLHRLFDGIL 123
Query: 188 GLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSH 247
GL F+ I+ P+WYNM+ QG + ++ FS WLN++ + E GGE++FGG D HFRG H
Sbjct: 124 GLSFQTISV----PVWYNMLNQGLVKERRFSFWLNRNVDEEEGGELVFGGLDPNHFRGDH 179
Query: 248 IYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGA 306
YVP+T + YWQ +GD+LI + STGFC GC A DSGTS+L+GPT +V QINHAIGA
Sbjct: 180 TYVPVTYQYYWQFGIGDVLIGDKSTGFCAPGCQAFADSGTSLLSGPTAIVTQINHAIGA 238
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 213 bits (543), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 107/240 (44%), Positives = 166/240 (69%), Gaps = 5/240 (2%)
Query: 70 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKC-LFSISCYLHSRYRARLS 128
V L NYL++QYYGEIGIG+PPQ+F V+FDTGS+NLWVPS+KC ++C +HS Y + S
Sbjct: 7 VVLTNYLNSQYYGEIGIGTPPQTFKVIFDTGSANLWVPSTKCSRLYLACGIHSLYESSDS 66
Query: 129 RTYTKI-VPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGIL 187
+Y + IHYGSG++ GF SQD+V +G + + Q F EVT+ L+PF+ QFDG+L
Sbjct: 67 SSYMENGDDFTIHYGSGRVKGFLSQDSVTVGGITVT-QTFGEVTQLPLIPFMLAQFDGVL 125
Query: 188 GLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSH 247
G+GF A G TP++ +++ QG + +K+FS++ N+ P+ +GGE++ GG D +H++G
Sbjct: 126 GMGFPAQAVGGVTPVFDHILSQGVLKEKVFSVYYNRGPH-LLGGEVVLGGSDPQHYQGDF 184
Query: 248 IYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAE 307
YV +++ WQI + + + SST CE+GC ++D+G+S ++ PT+ + I A+GA+
Sbjct: 185 HYVSLSKTDSWQITMKGVSV-GSSTLLCEEGCEVVVDTGSSFISAPTSSLKLIMQALGAK 243
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 51/83 (61%)
Query: 420 INCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPLWVLG 479
++C + ++P +SF +G R++ LS Y+ + +C A+D+PPP GP+WVLG
Sbjct: 252 VSCSQVPTLPDISFNLGGRAYTLSSTDYVLQYPNRRDKLCTVALHAMDIPPPTGPVWVLG 311
Query: 480 DMFLRAYHTVFDFGNLQIGFAEA 502
F+R ++T FD N +IGFA A
Sbjct: 312 ATFIRKFYTEFDRHNNRIGFALA 334
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 212 bits (539), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 106/250 (42%), Positives = 160/250 (64%), Gaps = 6/250 (2%)
Query: 72 LNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTY 131
L NYLD +Y+G I IGSPPQ+F+V+FDTGSSNLWVPS C S +C HSR++ S TY
Sbjct: 17 LINYLDMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCT-SPACKTHSRFQPSQSSTY 75
Query: 132 TKIVPC-KIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLG 190
++ I YG+G +SG D V + + + Q+F E E F+ +FDGILGLG
Sbjct: 76 SQPGQSFSIQYGTGSLSGIIGADQVSVEGLTVVGQQFGESVTEPGQTFVDAEFDGILGLG 135
Query: 191 FRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIYV 250
+ +A G TP++ NM+ Q + +FS++++ +P G E+IFGG+D HF GS +V
Sbjct: 136 YPSLAVGGVTPVFDNMMAQNLVDLPMFSVYMSSNPEGGAGSELIFGGYDHSHFSGSLNWV 195
Query: 251 PITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGA---E 307
P+T++ YWQI + +I + + FC +GC AI+D+GTS++ GP+ + Q+ +AIGA +
Sbjct: 196 PVTKQAYWQIALDNIQV-GGTVMFCSEGCQAIVDTGTSLITGPSDKIKQLQNAIGAAPVD 254
Query: 308 GIVSMQCKTV 317
G +++C +
Sbjct: 255 GEYAVECANL 264
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 52/87 (59%)
Query: 416 GKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPL 475
G+ + C ++ MP V+FTI + LSP Y C SGF LD+ PP GPL
Sbjct: 255 GEYAVECANLNVMPDVTFTINGVPYTLSPTAYTLLDFVDGMQFCSSGFQGLDIHPPAGPL 314
Query: 476 WVLGDMFLRAYHTVFDFGNLQIGFAEA 502
W+LGD+F+R +++VFD GN ++G A A
Sbjct: 315 WILGDVFIRQFYSVFDRGNNRVGLAPA 341
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 208 bits (529), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 105/242 (43%), Positives = 160/242 (66%), Gaps = 6/242 (2%)
Query: 70 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKC-LFSISCYLHSRYRARLS 128
V L NY+D QYYGEIGIG+PPQ+F VVFDTGSSN+WVPSSKC +C H + A S
Sbjct: 53 VILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDS 112
Query: 129 RTYT-KIVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGIL 187
+Y + Y +G +SGF SQD + +G + + Q F EVT+ LPF+ +FDG++
Sbjct: 113 SSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVT-QMFGEVTEMPALPFMLAEFDGVV 171
Query: 188 GLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDP-NSE-VGGEIIFGGFDWRHFRG 245
G+GF + A G TP++ N++ QG + + +FS + N+D NS+ +GG+I+ GG D +H+ G
Sbjct: 172 GMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEG 231
Query: 246 SHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIG 305
+ Y+ + + G WQI++ + + SST CEDGC A++D+G S ++G T+ + ++ A+G
Sbjct: 232 NFHYINLIKTGVWQIQMKGVSV-GSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALG 290
Query: 306 AE 307
A+
Sbjct: 291 AK 292
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 49/83 (59%)
Query: 420 INCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPLWVLG 479
+ C++ ++P +SF +G + + L+ Y+F+ +C A+D+PPP GP W LG
Sbjct: 300 VKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALG 359
Query: 480 DMFLRAYHTVFDFGNLQIGFAEA 502
F+R ++T FD N +IGFA A
Sbjct: 360 ATFIRKFYTEFDRRNNRIGFALA 382
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 208 bits (529), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 105/242 (43%), Positives = 160/242 (66%), Gaps = 6/242 (2%)
Query: 70 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKC-LFSISCYLHSRYRARLS 128
V L NY+D QYYGEIGIG+PPQ+F VVFDTGSSN+WVPSSKC +C H + A S
Sbjct: 10 VILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDS 69
Query: 129 RTYT-KIVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGIL 187
+Y + Y +G +SGF SQD + +G + + Q F EVT+ LPF+ +FDG++
Sbjct: 70 SSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVT-QMFGEVTEMPALPFMLAEFDGVV 128
Query: 188 GLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDP-NSE-VGGEIIFGGFDWRHFRG 245
G+GF + A G TP++ N++ QG + + +FS + N+D NS+ +GG+I+ GG D +H+ G
Sbjct: 129 GMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEG 188
Query: 246 SHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIG 305
+ Y+ + + G WQI++ + + SST CEDGC A++D+G S ++G T+ + ++ A+G
Sbjct: 189 NFHYINLIKTGVWQIQMKGVSV-GSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALG 247
Query: 306 AE 307
A+
Sbjct: 248 AK 249
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 49/83 (59%)
Query: 420 INCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPLWVLG 479
+ C++ ++P +SF +G + + L+ Y+F+ +C A+D+PPP GP W LG
Sbjct: 257 VKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALG 316
Query: 480 DMFLRAYHTVFDFGNLQIGFAEA 502
F+R ++T FD N +IGFA A
Sbjct: 317 ATFIRKFYTEFDRRNNRIGFALA 339
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 208 bits (529), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 105/242 (43%), Positives = 160/242 (66%), Gaps = 6/242 (2%)
Query: 70 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKC-LFSISCYLHSRYRARLS 128
V L NY+D QYYGEIGIG+PPQ+F VVFDTGSSN+WVPSSKC +C H + A S
Sbjct: 10 VILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDS 69
Query: 129 RTYTKI-VPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGIL 187
+Y + Y +G +SGF SQD + +G + + Q F EVT+ LPF+ +FDG++
Sbjct: 70 SSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVT-QMFGEVTEMPALPFMLAEFDGVV 128
Query: 188 GLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDP-NSE-VGGEIIFGGFDWRHFRG 245
G+GF + A G TP++ N++ QG + + +FS + N+D NS+ +GG+I+ GG D +H+ G
Sbjct: 129 GMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEG 188
Query: 246 SHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIG 305
+ Y+ + + G WQI++ + + SST CEDGC A++D+G S ++G T+ + ++ A+G
Sbjct: 189 NFHYINLIKTGVWQIQMKGVSV-GSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALG 247
Query: 306 AE 307
A+
Sbjct: 248 AK 249
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 49/83 (59%)
Query: 420 INCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPLWVLG 479
+ C++ ++P +SF +G + + L+ Y+F+ +C A+D+PPP GP W LG
Sbjct: 257 VKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALG 316
Query: 480 DMFLRAYHTVFDFGNLQIGFAEA 502
F+R ++T FD N +IGFA A
Sbjct: 317 ATFIRKFYTEFDRRNNRIGFALA 339
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 207 bits (528), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 105/242 (43%), Positives = 160/242 (66%), Gaps = 6/242 (2%)
Query: 70 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKC-LFSISCYLHSRYRARLS 128
V L NY+D QYYGEIGIG+PPQ+F VVFDTGSSN+WVPSSKC +C H + A S
Sbjct: 6 VILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDS 65
Query: 129 RTYT-KIVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGIL 187
+Y + Y +G +SGF SQD + +G + + Q F EVT+ LPF+ +FDG++
Sbjct: 66 SSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVT-QMFGEVTEMPALPFMLAEFDGVV 124
Query: 188 GLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDP-NSE-VGGEIIFGGFDWRHFRG 245
G+GF + A G TP++ N++ QG + + +FS + N+D NS+ +GG+I+ GG D +H+ G
Sbjct: 125 GMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEG 184
Query: 246 SHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIG 305
+ Y+ + + G WQI++ + + SST CEDGC A++D+G S ++G T+ + ++ A+G
Sbjct: 185 NFHYINLIKTGVWQIQMKGVSV-GSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALG 243
Query: 306 AE 307
A+
Sbjct: 244 AK 245
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 49/83 (59%)
Query: 420 INCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPLWVLG 479
+ C++ ++P +SF +G + + L+ Y+F+ +C A+D+PPP GP W LG
Sbjct: 253 VKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALG 312
Query: 480 DMFLRAYHTVFDFGNLQIGFAEA 502
F+R ++T FD N +IGFA A
Sbjct: 313 ATFIRKFYTEFDRRNNRIGFALA 335
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 207 bits (528), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 105/242 (43%), Positives = 160/242 (66%), Gaps = 6/242 (2%)
Query: 70 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKC-LFSISCYLHSRYRARLS 128
V L NY+D QYYGEIGIG+PPQ+F VVFDTGSSN+WVPSSKC +C H + A S
Sbjct: 7 VILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDS 66
Query: 129 RTYT-KIVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGIL 187
+Y + Y +G +SGF SQD + +G + + Q F EVT+ LPF+ +FDG++
Sbjct: 67 SSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVT-QMFGEVTEMPALPFMLAEFDGVV 125
Query: 188 GLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDP-NSE-VGGEIIFGGFDWRHFRG 245
G+GF + A G TP++ N++ QG + + +FS + N+D NS+ +GG+I+ GG D +H+ G
Sbjct: 126 GMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEG 185
Query: 246 SHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIG 305
+ Y+ + + G WQI++ + + SST CEDGC A++D+G S ++G T+ + ++ A+G
Sbjct: 186 NFHYINLIKTGVWQIQMKGVSV-GSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALG 244
Query: 306 AE 307
A+
Sbjct: 245 AK 246
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 49/83 (59%)
Query: 420 INCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPLWVLG 479
+ C++ ++P +SF +G + + L+ Y+F+ +C A+D+PPP GP W LG
Sbjct: 254 VKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALG 313
Query: 480 DMFLRAYHTVFDFGNLQIGFAEA 502
F+R ++T FD N +IGFA A
Sbjct: 314 ATFIRKFYTEFDRRNNRIGFALA 336
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 207 bits (528), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 105/242 (43%), Positives = 160/242 (66%), Gaps = 6/242 (2%)
Query: 70 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKC-LFSISCYLHSRYRARLS 128
V L NY+D QYYGEIGIG+PPQ+F VVFDTGSSN+WVPSSKC +C H + A S
Sbjct: 3 VILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDS 62
Query: 129 RTYT-KIVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGIL 187
+Y + Y +G +SGF SQD + +G + + Q F EVT+ LPF+ +FDG++
Sbjct: 63 SSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVT-QMFGEVTEMPALPFMLAEFDGVV 121
Query: 188 GLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDP-NSE-VGGEIIFGGFDWRHFRG 245
G+GF + A G TP++ N++ QG + + +FS + N+D NS+ +GG+I+ GG D +H+ G
Sbjct: 122 GMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEG 181
Query: 246 SHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIG 305
+ Y+ + + G WQI++ + + SST CEDGC A++D+G S ++G T+ + ++ A+G
Sbjct: 182 NFHYINLIKTGVWQIQMKGVSV-GSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALG 240
Query: 306 AE 307
A+
Sbjct: 241 AK 242
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 49/83 (59%)
Query: 420 INCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPLWVLG 479
+ C++ ++P +SF +G + + L+ Y+F+ +C A+D+PPP GP W LG
Sbjct: 250 VKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALG 309
Query: 480 DMFLRAYHTVFDFGNLQIGFAEA 502
F+R ++T FD N +IGFA A
Sbjct: 310 ATFIRKFYTEFDRRNNRIGFALA 332
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 207 bits (527), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 103/240 (42%), Positives = 157/240 (65%), Gaps = 7/240 (2%)
Query: 70 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKC-LFSISCYLHSRYRARLS 128
V L NY+D QYYGEIGIG+PPQ+F VVFDTGSSN+WVPSSKC +C H + A S
Sbjct: 10 VILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDS 69
Query: 129 RTYT-KIVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGIL 187
+Y + Y +G +SGF SQD + +G + + Q F EVT+ LPF+ +FDG++
Sbjct: 70 SSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVT-QMFGEVTEMPALPFMLAEFDGVV 128
Query: 188 GLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSH 247
G+GF + A G TP++ N++ QG + + +FS + N+D +GG+I+ GG D +H+ G+
Sbjct: 129 GMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRD---SLGGQIVLGGSDPQHYEGNF 185
Query: 248 IYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAE 307
Y+ + + G WQI++ + + SST CEDGC A++D+G S ++G T+ + ++ A+GA+
Sbjct: 186 HYINLIKTGVWQIQMKGVSV-GSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALGAK 244
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 49/83 (59%)
Query: 420 INCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPLWVLG 479
+ C++ ++P +SF +G + + L+ Y+F+ +C A+D+PPP GP W LG
Sbjct: 252 VKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALG 311
Query: 480 DMFLRAYHTVFDFGNLQIGFAEA 502
F+R ++T FD N +IGFA A
Sbjct: 312 ATFIRKFYTEFDRRNNRIGFALA 334
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 194 bits (492), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 105/258 (40%), Positives = 153/258 (59%), Gaps = 19/258 (7%)
Query: 70 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSR 129
V L NYL+AQYY +I +G+PPQ+F V+ DTGSSNLWVPS++C S++C+LHS+Y S
Sbjct: 5 VPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNEC-GSLACFLHSKYDHEASS 63
Query: 130 TY-TKIVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILG 188
+Y I YG+G + G+ SQD + IGD+ I Q+F E T E L F +FDGILG
Sbjct: 64 SYKANGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILG 123
Query: 189 LGFRDIAAGNATPLWYNMVRQGHISQKIFSLWL-NQDPNSEVGGEIIFGGFDWRHFRGSH 247
LG+ I+ P +YN ++Q + +K F+ +L + ++E GGE FGG D F+G
Sbjct: 124 LGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDI 183
Query: 248 IYVPITEKGYWQIK-----VGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINH 302
++P+ K YW++K +GD E S G A +D+GTS++ P+ + IN
Sbjct: 184 TWLPVRRKAYWEVKFEGIGLGDEYAELESHG-------AAIDTGTSLITLPSGLAEMINA 236
Query: 303 AIGAE----GIVSMQCKT 316
IGA+ G ++ C T
Sbjct: 237 EIGAKKGSTGQYTLDCNT 254
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 416 GKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPL 475
G+ ++C+ ++P + F +F + P Y ++ S CIS +D P P GPL
Sbjct: 246 GQYTLDCNTRDNLPDLIFNFNGYNFTIGPYDYTLEV----SGSCISAITPMDFPEPVGPL 301
Query: 476 WVLGDMFLRAYHTVFDFGNLQIGFAEA 502
++GD FLR Y++++D GN +G A+A
Sbjct: 302 AIVGDAFLRKYYSIYDLGNNAVGLAKA 328
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 105/258 (40%), Positives = 153/258 (59%), Gaps = 19/258 (7%)
Query: 70 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSR 129
V L NYL+AQYY +I +G+PPQ+F V+ DTGSSNLWVPS++C S++C+LHS+Y S
Sbjct: 5 VPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNEC-GSLACFLHSKYDHEASS 63
Query: 130 TY-TKIVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILG 188
+Y I YG+G + G+ SQD + IGD+ I Q+F E T E L F +FDGILG
Sbjct: 64 SYKANGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILG 123
Query: 189 LGFRDIAAGNATPLWYNMVRQGHISQKIFSLWL-NQDPNSEVGGEIIFGGFDWRHFRGSH 247
LG+ I+ P +YN ++Q + +K F+ +L + ++E GGE FGG D F+G
Sbjct: 124 LGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDI 183
Query: 248 IYVPITEKGYWQIK-----VGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINH 302
++P+ K YW++K +GD E S G A +D+GTS++ P+ + IN
Sbjct: 184 TWLPVRRKAYWEVKFEGIGLGDEYAELESHG-------AAIDTGTSLITLPSGLAEMINA 236
Query: 303 AIGAE----GIVSMQCKT 316
IGA+ G ++ C T
Sbjct: 237 EIGAKKGWTGQYTLDCNT 254
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 416 GKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPL 475
G+ ++C+ ++P + F +F + P Y ++ S CIS +D P P GPL
Sbjct: 246 GQYTLDCNTRDNLPDLIFNFNGYNFTIGPYDYTLEV----SGSCISAITPMDFPEPVGPL 301
Query: 476 WVLGDMFLRAYHTVFDFGNLQIGFAEA 502
++GD FLR Y++++D GN +G A+A
Sbjct: 302 AIVGDAFLRKYYSIYDIGNNAVGLAKA 328
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 105/258 (40%), Positives = 153/258 (59%), Gaps = 19/258 (7%)
Query: 70 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSR 129
V L NYL+AQYY +I +G+PPQ+F V+ DTGSSNLWVPS++C S++C+LHS+Y S
Sbjct: 5 VPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNEC-GSLACFLHSKYDHEASS 63
Query: 130 TY-TKIVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILG 188
+Y I YG+G + G+ SQD + IGD+ I Q+F E T E L F +FDGILG
Sbjct: 64 SYKANGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILG 123
Query: 189 LGFRDIAAGNATPLWYNMVRQGHISQKIFSLWL-NQDPNSEVGGEIIFGGFDWRHFRGSH 247
LG+ I+ P +YN ++Q + +K F+ +L + ++E GGE FGG D F+G
Sbjct: 124 LGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDI 183
Query: 248 IYVPITEKGYWQIK-----VGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINH 302
++P+ K YW++K +GD E S G A +D+GTS++ P+ + IN
Sbjct: 184 TWLPVRRKAYWEVKFEGIGLGDEYAELESHG-------AAIDTGTSLITLPSGLAEMINA 236
Query: 303 AIGAE----GIVSMQCKT 316
IGA+ G ++ C T
Sbjct: 237 EIGAKKGWTGQYTLDCNT 254
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 416 GKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPL 475
G+ ++C+ ++P + F +F + P Y ++ S CIS +D P P GPL
Sbjct: 246 GQYTLDCNTRDNLPDLIFNFNGYNFTIGPYDYTLEV----SGSCISAITPMDFPEPVGPL 301
Query: 476 WVLGDMFLRAYHTVFDFGNLQIGFAEA 502
++GD FLR Y++++D GN +G A+A
Sbjct: 302 AIVGDAFLRKYYSIYDLGNNAVGLAKA 328
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 192 bits (488), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 109/252 (43%), Positives = 155/252 (61%), Gaps = 11/252 (4%)
Query: 72 LNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTY 131
L NYLD +Y+G IGIG+P Q F+VVFDTGSSNLWVPS C S++C H+R+ S TY
Sbjct: 6 LENYLDMEYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCS-SLACTNHNRFNPEDSSTY 64
Query: 132 TKIVPC-KIHYGSGQISGFFSQDNVKIGDMIIKDQEF-VEVTKEGLLPFLALQFDGILGL 189
I YG+G ++G D V++G + +Q F + T+ G + A FDGILGL
Sbjct: 65 QSTSETVSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYA-PFDGILGL 123
Query: 190 GFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIY 249
+ I++ ATP++ N+ QG +SQ +FS++L+ D S G +IFGG D ++ GS +
Sbjct: 124 AYPSISSSGATPVFDNIWNQGLVSQDLFSVYLSADDQS--GSVVIFGGIDSSYYTGSLNW 181
Query: 250 VPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGA--- 306
VP+T +GYWQI V D + N C +GC AI+D+GTS+L GPT+ +A I IGA
Sbjct: 182 VPVTVEGYWQITV-DSITMNGEAIACAEGCQAIVDTGTSLLTGPTSPIANIQSDIGASEN 240
Query: 307 -EGIVSMQCKTV 317
+G + + C +
Sbjct: 241 SDGDMVVSCSAI 252
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Query: 413 NPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQ 472
N G ++C I+S+P + FTI +P+ P YI + E CISGF +++P
Sbjct: 240 NSDGDMVVSCSAISSLPDIVFTINGVQYPVPPSAYILQSEGS----CISGFQGMNLPTES 295
Query: 473 GPLWVLGDMFLRAYHTVFDFGNLQIGFAEAA 503
G LW+LGD+F+R Y TVFD N Q+G A A
Sbjct: 296 GELWILGDVFIRQYFTVFDRANNQVGLAPVA 326
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 192 bits (487), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 109/252 (43%), Positives = 155/252 (61%), Gaps = 11/252 (4%)
Query: 72 LNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTY 131
L NYLD +Y+G IGIG+P Q F+VVFDTGSSNLWVPS C S++C H+R+ S TY
Sbjct: 6 LENYLDMEYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCS-SLACTNHNRFNPEDSSTY 64
Query: 132 TKIVPC-KIHYGSGQISGFFSQDNVKIGDMIIKDQEF-VEVTKEGLLPFLALQFDGILGL 189
I YG+G ++G D V++G + +Q F + T+ G + A FDGILGL
Sbjct: 65 QSTSETVSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYA-PFDGILGL 123
Query: 190 GFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIY 249
+ I++ ATP++ N+ QG +SQ +FS++L+ D S G +IFGG D ++ GS +
Sbjct: 124 AYPSISSSGATPVFDNIWNQGLVSQDLFSVYLSADDQS--GSVVIFGGIDSSYYTGSLNW 181
Query: 250 VPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGA--- 306
VP+T +GYWQI V D + N C +GC AI+D+GTS+L GPT+ +A I IGA
Sbjct: 182 VPVTVEGYWQITV-DSITMNGEAIACAEGCQAIVDTGTSLLTGPTSPIANIQSDIGASEN 240
Query: 307 -EGIVSMQCKTV 317
+G + + C +
Sbjct: 241 SDGDMVVSCSAI 252
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Query: 413 NPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQ 472
N G ++C I+S+P + FTI +P+ P YI + E CISGF ++VP
Sbjct: 240 NSDGDMVVSCSAISSLPDIVFTINGVQYPVPPSAYILQSEGS----CISGFQGMNVPTES 295
Query: 473 GPLWVLGDMFLRAYHTVFDFGNLQIGFAEAA 503
G LW+LGD+F+R Y TVFD N Q+G A A
Sbjct: 296 GELWILGDVFIRQYFTVFDRANNQVGLAPVA 326
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 188 bits (478), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 113/301 (37%), Positives = 176/301 (58%), Gaps = 20/301 (6%)
Query: 32 LLRIQL-KKRQLGINTINAARL--ITKNEVHNRFNH--PKADVVY----LNNYLDAQYYG 82
L+++ L +K+ L N I +L K HN + P+A + L NYLD +Y+G
Sbjct: 1 LVKVPLVRKKSLRQNLIKDGKLKDFLKTHKHNPASKYFPEAAALIGDEPLENYLDTEYFG 60
Query: 83 EIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIV-PCKIHY 141
IGIG+P Q F+V+FDTGSSNLWVPS C S++C H+++ S T+ I Y
Sbjct: 61 TIGIGTPAQDFTVIFDTGSSNLWVPSVYC-SSLACSDHNQFNPDDSSTFEATXQELSITY 119
Query: 142 GSGQISGFFSQDNVKIGDMIIKDQEF-VEVTKEGLLPFLALQFDGILGLGFRDIAAGNAT 200
G+G ++G D V++G + +Q F + T+ G + A FDGILGL + I+A AT
Sbjct: 120 GTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYA-PFDGILGLAYPSISASGAT 178
Query: 201 PLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIYVPITEKGYWQI 260
P++ N+ QG +SQ +FS++L+ N + G ++ GG D ++ GS +VP++ +GYWQI
Sbjct: 179 PVFDNLWDQGLVSQDLFSVYLSS--NDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQI 236
Query: 261 KVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGA----EGIVSMQCKT 316
+ I ++ + C GC AI+D+GTS+L GPT+ +A I IGA +G + + C +
Sbjct: 237 TLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSS 295
Query: 317 V 317
+
Sbjct: 296 I 296
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 55/91 (60%), Gaps = 4/91 (4%)
Query: 413 NPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQ 472
N G+ I+C I S+P + FTI +PLSP YI + ++ C SGF +DVP
Sbjct: 284 NSDGEMVISCSSIDSLPDIVFTIDGVQYPLSPSAYILQDDDS----CTSGFEGMDVPTSS 339
Query: 473 GPLWVLGDMFLRAYHTVFDFGNLQIGFAEAA 503
G LW+LGD+F+R Y+TVFD N ++G A A
Sbjct: 340 GELWILGDVFIRQYYTVFDRANNKVGLAPVA 370
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 188 bits (478), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 113/301 (37%), Positives = 176/301 (58%), Gaps = 20/301 (6%)
Query: 32 LLRIQL-KKRQLGINTINAARL--ITKNEVHNRFNH--PKADVVY----LNNYLDAQYYG 82
L+++ L +K+ L N I +L K HN + P+A + L NYLD +Y+G
Sbjct: 1 LVKVPLVRKKSLRQNLIKDGKLKDFLKTHKHNPASKYFPEAAALIGDEPLENYLDTEYFG 60
Query: 83 EIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIV-PCKIHY 141
IGIG+P Q F+V+FDTGSSNLWVPS C S++C H+++ S T+ I Y
Sbjct: 61 TIGIGTPAQDFTVIFDTGSSNLWVPSVYC-SSLACSDHNQFNPDDSSTFEATSQELSITY 119
Query: 142 GSGQISGFFSQDNVKIGDMIIKDQEF-VEVTKEGLLPFLALQFDGILGLGFRDIAAGNAT 200
G+G ++G D V++G + +Q F + T+ G + A FDGILGL + I+A AT
Sbjct: 120 GTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYA-PFDGILGLAYPSISASGAT 178
Query: 201 PLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIYVPITEKGYWQI 260
P++ N+ QG +SQ +FS++L+ N + G ++ GG D ++ GS +VP++ +GYWQI
Sbjct: 179 PVFDNLWDQGLVSQDLFSVYLSS--NDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQI 236
Query: 261 KVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGA----EGIVSMQCKT 316
+ I ++ + C GC AI+D+GTS+L GPT+ +A I IGA +G + + C +
Sbjct: 237 TLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSS 295
Query: 317 V 317
+
Sbjct: 296 I 296
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 55/91 (60%), Gaps = 4/91 (4%)
Query: 413 NPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQ 472
N G+ I+C I S+P + FTI +PLSP YI + ++ C SGF +DVP
Sbjct: 284 NSDGEMVISCSSIDSLPDIVFTIDGVQYPLSPSAYILQDDDS----CTSGFEGMDVPTSS 339
Query: 473 GPLWVLGDMFLRAYHTVFDFGNLQIGFAEAA 503
G LW+LGD+F+R Y+TVFD N ++G A A
Sbjct: 340 GELWILGDVFIRQYYTVFDRANNKVGLAPVA 370
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 184 bits (468), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 106/269 (39%), Positives = 164/269 (60%), Gaps = 14/269 (5%)
Query: 72 LNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTY 131
L NYLD +Y+G IGIG+P Q F+V+FDTGSSNLWVPS C S++C H+++ S T+
Sbjct: 6 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYC-SSLACSDHNQFNPDDSSTF 64
Query: 132 TKIV-PCKIHYGSGQISGFFSQDNVKIGDMIIKDQEF-VEVTKEGLLPFLALQFDGILGL 189
I YG+G ++G D V++G + +Q F + T+ G + A FDGILGL
Sbjct: 65 EATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYA-PFDGILGL 123
Query: 190 GFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIY 249
+ I+A ATP++ N+ QG +SQ +FS++L+ N + G ++ GG D ++ GS +
Sbjct: 124 AYPSISASGATPVFDNLWDQGLVSQDLFSVYLSS--NDDSGSVVLLGGIDSSYYTGSLNW 181
Query: 250 VPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGA--- 306
VP++ +GYWQI + I ++ + C GC AI+D+GTS+L GPT+ +A I IGA
Sbjct: 182 VPVSVEGYWQITLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASEN 240
Query: 307 -EGIVSMQCKTVVFEYGNMIWEFLISGVQ 334
+G + + C ++ +++ F I+GVQ
Sbjct: 241 SDGEMVISCSSIA-SLPDIV--FTINGVQ 266
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 56/91 (61%), Gaps = 4/91 (4%)
Query: 413 NPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQ 472
N G+ I+C IAS+P + FTI +PLSP YI + ++ C SGF +DVP
Sbjct: 240 NSDGEMVISCSSIASLPDIVFTINGVQYPLSPSAYILQDDDS----CTSGFEGMDVPTSS 295
Query: 473 GPLWVLGDMFLRAYHTVFDFGNLQIGFAEAA 503
G LW+LGD+F+R Y+TVFD N ++G A A
Sbjct: 296 GELWILGDVFIRQYYTVFDRANNKVGLAPVA 326
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 184 bits (468), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 95/234 (40%), Positives = 143/234 (61%), Gaps = 3/234 (1%)
Query: 75 YLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTY-TK 133
Y+DA Y+GEI IG+PPQ+F V+FDTGSSNLWVPS C S +C HSR+ S TY T
Sbjct: 9 YMDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQ-SQACTSHSRFNPSESSTYSTN 67
Query: 134 IVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRD 193
+ YGSG ++GFF D + + + + +QEF E F+ QFDGI+GL +
Sbjct: 68 GQTFSLQYGSGSLTGFFGYDTLTVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMGLAYPA 127
Query: 194 IAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIYVPIT 253
++ AT MV++G ++ +FS++L+ S GG ++FGG D + G + P+T
Sbjct: 128 LSVDEATTAMQGMVQEGALTSPVFSVYLSNQQGSS-GGAVVFGGVDSSLYTGQIYWAPVT 186
Query: 254 EKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAE 307
++ YWQI + + LI ++G+C +GC AI+D+GTS+L P ++ + A GA+
Sbjct: 187 QELYWQIGIEEFLIGGQASGWCSEGCQAIVDTGTSLLTVPQQYMSALLQATGAQ 240
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 5/89 (5%)
Query: 416 GKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQG-P 474
G+ +NC+ I ++P ++F I FPL P YI ++ C G + G P
Sbjct: 245 GQFLVNCNSIQNLPSLTFIINGVEFPLPPSSYILS----NNGYCTVGVEPTYLSSQNGQP 300
Query: 475 LWVLGDMFLRAYHTVFDFGNLQIGFAEAA 503
LW+LGD+FLR+Y++V+D GN ++GFA AA
Sbjct: 301 LWILGDVFLRSYYSVYDLGNNRVGFATAA 329
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 184 bits (468), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 101/252 (40%), Positives = 155/252 (61%), Gaps = 11/252 (4%)
Query: 72 LNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTY 131
L NYLD +Y+G IGIG+P Q F+V+FDTGSSNLWVPS C S++C H+++ S T+
Sbjct: 6 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYC-SSLACSDHNQFNPDDSSTF 64
Query: 132 TKIV-PCKIHYGSGQISGFFSQDNVKIGDMIIKDQEF-VEVTKEGLLPFLALQFDGILGL 189
I YG+G ++G D V++G + +Q F + T+ G + A FDGILGL
Sbjct: 65 EATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYA-PFDGILGL 123
Query: 190 GFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIY 249
+ I+A ATP++ N+ QG +SQ +FS++L+ N + G ++ GG D ++ GS +
Sbjct: 124 AYPSISASGATPVFDNLWDQGLVSQDLFSVYLSS--NDDSGSVVLLGGIDSSYYTGSLNW 181
Query: 250 VPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGA--- 306
VP++ +GYWQI + I ++ + C GC AI+D+GTS+L GPT+ +A I IGA
Sbjct: 182 VPVSVEGYWQITLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASEN 240
Query: 307 -EGIVSMQCKTV 317
+G + + C ++
Sbjct: 241 SDGEMVISCSSI 252
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 55/91 (60%), Gaps = 4/91 (4%)
Query: 413 NPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQ 472
N G+ I+C I S+P + FTI +PLSP YI + ++ C SGF +DVP
Sbjct: 240 NSDGEMVISCSSIDSLPDIVFTIDGVQYPLSPSAYILQDDDS----CTSGFEGMDVPTSS 295
Query: 473 GPLWVLGDMFLRAYHTVFDFGNLQIGFAEAA 503
G LW+LGD+F+R Y+TVFD N ++G A A
Sbjct: 296 GELWILGDVFIRQYYTVFDRANNKVGLAPVA 326
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 184 bits (467), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 101/252 (40%), Positives = 155/252 (61%), Gaps = 11/252 (4%)
Query: 72 LNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTY 131
L NYLD +Y+G IGIG+P Q F+V+FDTGSSNLWVPS C S++C H+++ S T+
Sbjct: 6 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYC-SSLACSDHNQFNPDDSSTF 64
Query: 132 TKIV-PCKIHYGSGQISGFFSQDNVKIGDMIIKDQEF-VEVTKEGLLPFLALQFDGILGL 189
I YG+G ++G D V++G + +Q F + T+ G + A FDGILGL
Sbjct: 65 EATXQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYA-PFDGILGL 123
Query: 190 GFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIY 249
+ I+A ATP++ N+ QG +SQ +FS++L+ N + G ++ GG D ++ GS +
Sbjct: 124 AYPSISASGATPVFDNLWDQGLVSQDLFSVYLSS--NDDSGSVVLLGGIDSSYYTGSLNW 181
Query: 250 VPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGA--- 306
VP++ +GYWQI + I ++ + C GC AI+D+GTS+L GPT+ +A I IGA
Sbjct: 182 VPVSVEGYWQITLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASEN 240
Query: 307 -EGIVSMQCKTV 317
+G + + C ++
Sbjct: 241 SDGEMVISCSSI 252
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 55/91 (60%), Gaps = 4/91 (4%)
Query: 413 NPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQ 472
N G+ I+C I S+P + FTI +PLSP YI + ++ C SGF +DVP
Sbjct: 240 NSDGEMVISCSSIDSLPDIVFTINGVQYPLSPSAYILQDDDS----CTSGFEGMDVPTSS 295
Query: 473 GPLWVLGDMFLRAYHTVFDFGNLQIGFAEAA 503
G LW+LGD+F+R Y+TVFD N ++G A A
Sbjct: 296 GELWILGDVFIRQYYTVFDRANNKVGLAPVA 326
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 184 bits (467), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 101/252 (40%), Positives = 155/252 (61%), Gaps = 11/252 (4%)
Query: 72 LNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTY 131
L NYLD +Y+G IGIG+P Q F+V+FDTGSSNLWVPS C S++C H+++ S T+
Sbjct: 6 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYC-SSLACSDHNQFNPDDSSTF 64
Query: 132 TKIV-PCKIHYGSGQISGFFSQDNVKIGDMIIKDQEF-VEVTKEGLLPFLALQFDGILGL 189
I YG+G ++G D V++G + +Q F + T+ G + A FDGILGL
Sbjct: 65 EATXQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYA-PFDGILGL 123
Query: 190 GFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIY 249
+ I+A ATP++ N+ QG +SQ +FS++L+ N + G ++ GG D ++ GS +
Sbjct: 124 AYPSISASGATPVFDNLWDQGLVSQDLFSVYLSS--NDDSGSVVLLGGIDSSYYTGSLNW 181
Query: 250 VPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGA--- 306
VP++ +GYWQI + I ++ + C GC AI+D+GTS+L GPT+ +A I IGA
Sbjct: 182 VPVSVEGYWQITLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASEN 240
Query: 307 -EGIVSMQCKTV 317
+G + + C ++
Sbjct: 241 SDGEMVISCSSI 252
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 55/91 (60%), Gaps = 4/91 (4%)
Query: 413 NPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQ 472
N G+ I+C I S+P + FTI +PLSP YI + ++ C SGF +DVP
Sbjct: 240 NSDGEMVISCSSIDSLPDIVFTIDGVQYPLSPSAYILQDDDS----CTSGFEGMDVPTSS 295
Query: 473 GPLWVLGDMFLRAYHTVFDFGNLQIGFAEAA 503
G LW+LGD+F+R Y+TVFD N ++G A A
Sbjct: 296 GELWILGDVFIRQYYTVFDRANNKVGLAPVA 326
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 184 bits (467), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 101/252 (40%), Positives = 155/252 (61%), Gaps = 11/252 (4%)
Query: 72 LNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTY 131
L NYLD +Y+G IGIG+P Q F+V+FDTGSSNLWVPS C S++C H+++ S T+
Sbjct: 6 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYC-SSLACSDHNQFNPDDSSTF 64
Query: 132 TKIV-PCKIHYGSGQISGFFSQDNVKIGDMIIKDQEF-VEVTKEGLLPFLALQFDGILGL 189
I YG+G ++G D V++G + +Q F + T+ G + A FDGILGL
Sbjct: 65 EATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYA-PFDGILGL 123
Query: 190 GFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIY 249
+ I+A ATP++ N+ QG +SQ +FS++L+ N + G ++ GG D ++ GS +
Sbjct: 124 AYPSISASGATPVFDNLWDQGLVSQDLFSVYLSS--NDDSGSVVLLGGIDSSYYTGSLNW 181
Query: 250 VPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGA--- 306
VP++ +GYWQI + I ++ + C GC AI+D+GTS+L GPT+ +A I IGA
Sbjct: 182 VPVSVEGYWQITLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASEN 240
Query: 307 -EGIVSMQCKTV 317
+G + + C ++
Sbjct: 241 SDGEMVISCSSI 252
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 55/91 (60%), Gaps = 4/91 (4%)
Query: 413 NPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQ 472
N G+ I+C I S+P + FTI +PLSP YI + ++ C SGF +DVP
Sbjct: 240 NSDGEMVISCSSIDSLPDIVFTINGVQYPLSPSAYILQDDDS----CTSGFEGMDVPTSS 295
Query: 473 GPLWVLGDMFLRAYHTVFDFGNLQIGFAEAA 503
G LW+LGD+F+R Y+TVFD N ++G A A
Sbjct: 296 GELWILGDVFIRQYYTVFDRANNKVGLAPVA 326
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 99/260 (38%), Positives = 153/260 (58%), Gaps = 16/260 (6%)
Query: 72 LNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTY 131
L +YLD+QY+G+I IG+PPQ F+VVFDTGSS+LWVPS C ++ C H R+ R S T+
Sbjct: 5 LTSYLDSQYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNV-CKNHHRFDPRKSSTF 63
Query: 132 TKI-VPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLG 190
+ P IHYG+G + GF D V + +++ +Q T++ F +FDGILGL
Sbjct: 64 RNLGKPLSIHYGTGSMEGFLGYDTVTVSNIVDPNQTVGLSTEQPGEVFTYSEFDGILGLA 123
Query: 191 FRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIYV 250
+ +A+ + P++ NM+ + +++ +FS++++++ G + G D ++ GS +V
Sbjct: 124 YPSLASEYSVPVFDNMMDRHLVARDLFSVYMDRNGQ---GSMLTLGAIDPSYYTGSLHWV 180
Query: 251 PITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAE--- 307
P+T + YWQ V + I + C GC AILD+GTSVL GP++ + +I AIGA
Sbjct: 181 PVTLQQYWQFTVDSVTINGVAVA-CVGGCQAILDTGTSVLFGPSSDILKIQMAIGATENR 239
Query: 308 -GIVSMQC------KTVVFE 320
G + C TVVFE
Sbjct: 240 YGEFDVNCGNLRSMPTVVFE 259
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 53/90 (58%), Gaps = 8/90 (8%)
Query: 413 NPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQ 472
N G+ +NC ++ SMP V F I R +PLSP Y K ++G C SGF +
Sbjct: 238 NRYGEFDVNCGNLRSMPTVVFEINGRDYPLSPSAYTSK-DQG---FCTSGFQGDN----N 289
Query: 473 GPLWVLGDMFLRAYHTVFDFGNLQIGFAEA 502
LW+LGD+F+R Y++VFD N ++G A+A
Sbjct: 290 SELWILGDVFIREYYSVFDRANNRVGLAKA 319
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 172 bits (437), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 102/288 (35%), Positives = 156/288 (54%), Gaps = 20/288 (6%)
Query: 70 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSR 129
V L NYLD+QY+G+I +G+PPQ F+V+FDTGSS+ WVPS C S +C H R+ R S
Sbjct: 6 VPLTNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCK-SNACKNHQRFDPRKSS 64
Query: 130 TYTKI-VPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILG 188
T+ + P IHYG+G + G D V + +++ Q T+E F +FDGILG
Sbjct: 65 TFQNLGKPLSIHYGTGSMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDVFTYAEFDGILG 124
Query: 189 LGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHI 248
+ + +A+ + P++ NM+ + ++Q +FS++++++ + + G D ++ GS
Sbjct: 125 MAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQESM---LTLGAIDPSYYTGSLH 181
Query: 249 YVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAE- 307
+VP+T + YWQ V + I CE GC AILD+GTS L GP++ + I AIGA
Sbjct: 182 WVPVTVQQYWQFTVDSVTISGVVVA-CEGGCQAILDTGTSKLVGPSSDILNIQQAIGATQ 240
Query: 308 ---GIVSMQCK------TVVFEYGNMIWEFLISGVQPETVCSDIGLCV 346
G + C TVVFE ++ S + D G C
Sbjct: 241 NQYGEFDIDCDNLSYMPTVVFEINGKMYPLTPSAYTSQ----DQGFCT 284
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 8/90 (8%)
Query: 413 NPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQ 472
N G+ I+CD+++ MP V F I + +PL+P Y + ++G C SGF + +
Sbjct: 241 NQYGEFDIDCDNLSYMPTVVFEINGKMYPLTPSAYTSQ-DQG---FCTSGFQSEN----H 292
Query: 473 GPLWVLGDMFLRAYHTVFDFGNLQIGFAEA 502
W+LGD+F+R Y++VFD N +G A+A
Sbjct: 293 SQKWILGDVFIREYYSVFDRANNLVGLAKA 322
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 172 bits (436), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 102/288 (35%), Positives = 156/288 (54%), Gaps = 20/288 (6%)
Query: 70 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSR 129
V L NYLD+QY+G+I +G+PPQ F+V+FDTGSS+ WVPS C S +C H R+ R S
Sbjct: 6 VPLTNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCK-SNACKNHQRFDPRKSS 64
Query: 130 TYTKI-VPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILG 188
T+ + P IHYG+G + G D V + +++ Q T+E F +FDGILG
Sbjct: 65 TFQNLGKPLSIHYGTGSMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDFFTYAEFDGILG 124
Query: 189 LGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHI 248
+ + +A+ + P++ NM+ + ++Q +FS++++++ + + G D ++ GS
Sbjct: 125 MAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQESM---LTLGAIDPSYYTGSLH 181
Query: 249 YVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAE- 307
+VP+T + YWQ V + I CE GC AILD+GTS L GP++ + I AIGA
Sbjct: 182 WVPVTVQQYWQFTVDSVTISGVVVA-CEGGCQAILDTGTSKLVGPSSDILNIQQAIGATQ 240
Query: 308 ---GIVSMQCK------TVVFEYGNMIWEFLISGVQPETVCSDIGLCV 346
G + C TVVFE ++ S + D G C
Sbjct: 241 NQYGEFDIDCDNLSYMPTVVFEINGKMYPLTPSAYTSQ----DQGFCT 284
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 8/90 (8%)
Query: 413 NPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQ 472
N G+ I+CD+++ MP V F I + +PL+P Y + ++G C SGF + +
Sbjct: 241 NQYGEFDIDCDNLSYMPTVVFEINGKMYPLTPSAYTSQ-DQG---FCTSGFQSEN----H 292
Query: 473 GPLWVLGDMFLRAYHTVFDFGNLQIGFAEA 502
W+LGD+F+R Y++VFD N +G A+A
Sbjct: 293 SQKWILGDVFIREYYSVFDRANNLVGLAKA 322
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 171 bits (433), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 100/251 (39%), Positives = 143/251 (56%), Gaps = 11/251 (4%)
Query: 72 LNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTY 131
+ N D +YYG I IG+PP+SF V+FDTGSSNLWV SS C + +C H++++ R S TY
Sbjct: 6 MKNEADTEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCS-AQACSNHNKFKPRQSSTY 64
Query: 132 TKI-VPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPF-LALQFDGILGL 189
+ + YG+G + G QD V +G +QE E E PF A FDGILGL
Sbjct: 65 VETGKTVDLTYGTGGMRGILGQDTVSVGGGSDPNQELGESQTE-PGPFQAAAPFDGILGL 123
Query: 190 GFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIY 249
+ IAA A P++ NM Q + + +FS +L+ G E++ GG D H+ GS +
Sbjct: 124 AYPSIAAAGAVPVFDNMGSQSLVEKDLFSFYLSG--GGANGSEVMLGGVDNSHYTGSIHW 181
Query: 250 VPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGA--- 306
+P+T + YWQ+ + I + N T CE GC AI+D+GTS + P + +A I IGA
Sbjct: 182 IPVTAEKYWQVALDGITV-NGQTAACE-GCQAIVDTGTSKIVAPVSALANIMKDIGASEN 239
Query: 307 EGIVSMQCKTV 317
+G + C +V
Sbjct: 240 QGEMMGNCASV 250
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 416 GKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPL 475
G+ NC + S+P ++FTI PL P YI EG C SG + VP L
Sbjct: 241 GEMMGNCASVQSLPDITFTINGVKQPLPPSAYI----EGDQAFCTSGLGSSGVPSNTSEL 296
Query: 476 WVLGDMFLRAYHTVFDFGNLQIGFAEAA 503
W+ GD+FLR Y+T++D N ++GFA AA
Sbjct: 297 WIFGDVFLRNYYTIYDRTNNKVGFAPAA 324
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/157 (46%), Positives = 103/157 (65%), Gaps = 3/157 (1%)
Query: 70 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKC-LFSISCYLHSRYRARLS 128
V L NY+D QYYGEIGIG+PPQ+F VVFDTGSSN+WVPSSKC +C H + A S
Sbjct: 10 VILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDS 69
Query: 129 RTYT-KIVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGIL 187
+Y + Y +G +SGF SQD + +G + + Q F EVT+ LPF+ +FDG++
Sbjct: 70 SSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVT-QMFGEVTEMPALPFMLAEFDGVV 128
Query: 188 GLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQD 224
G+GF + A G TP++ N++ QG + + +FS + N+D
Sbjct: 129 GMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRD 165
>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QRV|B Chain B, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QS1|A Chain A, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|B Chain B, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|C Chain C, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|D Chain D, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
Length = 336
Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 87/235 (37%), Positives = 131/235 (55%), Gaps = 20/235 (8%)
Query: 67 ADVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRAR 126
D V LN+ + YYGE IG Q F+ +FDTGS+NLWVPS++C +I C + Y +
Sbjct: 10 GDSVTLNDVANVMYYGEAQIGDNKQKFAFIFDTGSANLWVPSAQCN-TIGCKTKNLYDSN 68
Query: 127 LSRTYTKI-VPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTK-EGLLPFLAL-QF 183
S+TY K +++Y SG +SGFFS+D V I ++ +F+EVT G P L QF
Sbjct: 69 KSKTYEKDGTKVEMNYVSGTVSGFFSKDIVTIANLSFP-YKFIEVTDTNGFEPAYTLGQF 127
Query: 184 DGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHF 243
DGI+GLG++D++ G+ P+ + Q I Q +F+ +L D + G + GG + R +
Sbjct: 128 DGIVGLGWKDLSIGSVDPVVVELKNQNKIEQAVFTFYLPFDDKHK--GYLTIGGIEDRFY 185
Query: 244 RGSHIYVPITEKGYWQIKV----GDILIENSSTGFCEDGCTAILDSGTSVLAGPT 294
G Y + YWQ+ + G++ +E + TAI+DSGTS + PT
Sbjct: 186 EGQLTYEKLNHDLYWQVDLDLHFGNLTVEKA---------TAIVDSGTSSITAPT 231
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 409 EVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDV 468
+V+ P +I + +P + F + L PE Y+ +I + ++C+ I +D+
Sbjct: 242 DVVKIPFLPLYITTCNNPKLPTLEFRSATNVYTLEPEYYLQQIFDFGISLCMVSIIPVDL 301
Query: 469 PPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEA 502
++LGD F+R Y TVFD+ N +GFA A
Sbjct: 302 ---NKNTFILGDPFMRKYFTVFDYDNHTVGFALA 332
>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
pdb|2ANL|B Chain B, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
Length = 327
Score = 135 bits (339), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 83/236 (35%), Positives = 133/236 (56%), Gaps = 14/236 (5%)
Query: 68 DVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARL 127
DV+ L++ + +YGE +G Q F ++FDTGS+NLWVPS KC SI C Y +
Sbjct: 4 DVIELDDVANLMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCN-SIGCSTKHLYDSSK 62
Query: 128 SRTYTKI-VPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTK-EGLLP-FLALQFD 184
S++Y K +I YGSG + GFFS+D V +G + + +F+EVT + L P + A +FD
Sbjct: 63 SKSYEKDGTKVEITYGSGTVRGFFSKDLVTLGYLSLP-YKFIEVTDTDDLEPLYTAAEFD 121
Query: 185 GILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLN-QDPNSEVGGEIIFGGFDWRHF 243
GILGLG++D++ G+ P+ + Q I Q +F+ +L D +S G + GG + + +
Sbjct: 122 GILGLGWKDLSIGSIDPIVVELKNQNKIDQALFTFYLPVHDKHS---GYLTIGGIEEKFY 178
Query: 244 RGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQ 299
G Y + +WQ+ + D+ +S + I+DSGTS + PT+ + +
Sbjct: 179 EGELTYEKLNHDLFWQVDL-DVNFGKTSM----EKANVIVDSGTSTITAPTSFINK 229
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 406 KLCEVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIA 465
K V+ P +I + MP + F N ++ L PE Y+ + + T+C+ +
Sbjct: 232 KDLNVIKVPFLPFYITTCNNKDMPTLEFKSANNTYTLEPEYYMEPLLDIDDTLCMLYILP 291
Query: 466 LDVPPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEA 502
+D+ ++LGD F+R Y TVFD+ IGFA A
Sbjct: 292 VDI---DKNTFILGDPFMRKYFTVFDYDKESIGFAVA 325
>pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
pdb|1MIQ|B Chain B, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
Length = 375
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/272 (31%), Positives = 144/272 (52%), Gaps = 28/272 (10%)
Query: 44 INTINAARLITKNEVHNRFNHPKA------------DVVYLNNYLDAQYYGEIGIGSPPQ 91
+ TI+ L KN + FN K+ DV+ L++ + +YGE +G Q
Sbjct: 18 LKTISKKNL--KNYIKETFNFFKSGYMKQNYLGSENDVIELDDVANIMFYGEGEVGDNHQ 75
Query: 92 SFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKI-VPCKIHYGSGQISGFF 150
F ++FDTGS+NLWVPS KC S C + + Y + S++Y K I YGSG + GFF
Sbjct: 76 KFMLIFDTGSANLWVPSKKCN-SSGCSIKNLYDSSKSKSYEKDGTKVDITYGSGTVKGFF 134
Query: 151 SQDNVKIGDMIIKDQEFVEVTK-EGLLP-FLALQFDGILGLGFRDIAAGNATPLWYNMVR 208
S+D V +G + + +F+EVT + L P + +++FDGILGLG++D++ G+ P+ +
Sbjct: 135 SKDLVTLGHLSMP-YKFIEVTDTDDLEPIYSSVEFDGILGLGWKDLSIGSIDPIVVELKN 193
Query: 209 QGHISQKIFSLWLNQDPNSEV-GGEIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDILI 267
Q I +F+ +L P +V G + GG + + + G+ Y + YWQI + D+
Sbjct: 194 QNKIDNALFTFYL---PVHDVHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDL-DVHF 249
Query: 268 ENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQ 299
+ + I+DSGT+ + P+ + +
Sbjct: 250 GKQTM----EKANVIVDSGTTTITAPSEFLNK 277
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 422 CDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPLWVLGDM 481
CD+ MP + F N ++ L PE Y+ I E T+C+ + +D+ ++LGD
Sbjct: 297 CDN-KEMPTLEFKSANNTYTLEPEYYMNPILEVDDTLCMITMLPVDI---DSNTFILGDP 352
Query: 482 FLRAYHTVFDFGNLQIGFAEA 502
F+R Y TVFD+ +GFA A
Sbjct: 353 FMRKYFTVFDYDKESVGFAIA 373
>pdb|3RFI|A Chain A, Crystal Structure Of The Saposin-Like Domain Of Plant
Aspartic Protease From Solanum Tuberosum
Length = 108
Score = 128 bits (321), Expect = 8e-30, Method: Composition-based stats.
Identities = 56/107 (52%), Positives = 80/107 (74%), Gaps = 1/107 (0%)
Query: 306 AEGIVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKT 365
A IVSM+CKT+V +YG MIW+ L+SGV+P+ VCS GLC +G+ ++S+ I+TVV+ +T
Sbjct: 3 AMAIVSMECKTIVSQYGEMIWDLLVSGVRPDQVCSQAGLCFVDGAQHVSSNIKTVVERET 62
Query: 366 SNGSSINESTLCAFCEMIVFWIQMQLKQQKTKEAIFKYADKLCEVLP 412
GSS+ E+ LC CEM V W+Q QLKQ+ TKE + +Y ++LCE +P
Sbjct: 63 E-GSSVGEAPLCTACEMAVVWMQNQLKQEGTKEKVLEYVNQLCEKIP 108
>pdb|1LYA|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYW|B Chain B, Cathepsin D At Ph 7.5
pdb|1LYW|D Chain D, Cathepsin D At Ph 7.5
pdb|1LYW|F Chain F, Cathepsin D At Ph 7.5
pdb|1LYW|H Chain H, Cathepsin D At Ph 7.5
pdb|1LYB|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 241
Score = 128 bits (321), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 100/149 (67%), Gaps = 1/149 (0%)
Query: 158 GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIF 217
G + ++ Q F E TK+ + F+A +FDGILG+ + I+ N P++ N+++Q + Q IF
Sbjct: 1 GGVKVERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIF 60
Query: 218 SLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCED 277
S +L++DP+++ GGE++ GG D ++++GS Y+ +T K YWQ+ + + + + T C++
Sbjct: 61 SFYLSRDPDAQPGGELMLGGTDSKYYKGSLSYLNVTRKAYWQVHLDQVEVASGLT-LCKE 119
Query: 278 GCTAILDSGTSVLAGPTTVVAQINHAIGA 306
GC AI+D+GTS++ GP V ++ AIGA
Sbjct: 120 GCEAIVDTGTSLMVGPVDEVRELQKAIGA 148
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 67/98 (68%)
Query: 406 KLCEVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIA 465
K +P G+ I C+ ++++P ++ +G + + LSPE Y K+ + T+C+SGF+
Sbjct: 144 KAIGAVPLIQGEYMIPCEKVSTLPAITLKLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMG 203
Query: 466 LDVPPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEAA 503
+D+PPP GPLW+LGD+F+ Y+TVFD N ++GFAEAA
Sbjct: 204 MDIPPPSGPLWILGDVFIGRYYTVFDRDNNRVGFAEAA 241
>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
pdb|1LS5|B Chain B, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
Length = 328
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 128/235 (54%), Gaps = 12/235 (5%)
Query: 68 DVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARL 127
D + L++ + +YGE IG+ Q F +FDTGS+NLWVPS C SI C Y A
Sbjct: 4 DSIELDDVANLMFYGEGQIGTNKQPFMFIFDTGSANLWVPSVNCD-SIGCSTKHLYDASA 62
Query: 128 SRTYTKI-VPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTK-EGLLP-FLALQFD 184
S++Y K +I YGSG + G+FS+D + +GD+ + +F+EVT + L P + +FD
Sbjct: 63 SKSYEKDGTKVEISYGSGTVRGYFSKDVISLGDLSLP-YKFIEVTDADDLEPIYSGSEFD 121
Query: 185 GILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFR 244
GILGLG++D++ G+ P+ + +Q I +F+ +L + + G + GG + +
Sbjct: 122 GILGLGWKDLSIGSIDPVVVELKKQNKIDNALFTFYLPV--HDKHVGYLTIGGIESDFYE 179
Query: 245 GSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQ 299
G Y + YWQI + DI + A++DSGTS + PT+ + +
Sbjct: 180 GPLTYEKLNHDLYWQIDL-DIHFGK----YVMQKANAVVDSGTSTITAPTSFLNK 229
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 410 VLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVP 469
V+ P ++ D +P + F N + L PE Y+ + + +C+ + +D+
Sbjct: 236 VIKVPFLPLYVTTCDNDDLPTLEFHSRNNKYTLEPEFYMDPLSDIDPALCMLYILPVDI- 294
Query: 470 PPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEA 502
++LGD F+R Y TVFD+ +GFA A
Sbjct: 295 --DDNTFILGDPFMRKYFTVFDYEKESVGFAVA 325
>pdb|2BJU|A Chain A, Plasmepsin Ii Complexed With A Highly Active Achiral
Inhibitor
Length = 453
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 130/240 (54%), Gaps = 20/240 (8%)
Query: 68 DVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARL 127
D + L ++ + +YG+ +G Q F+ + DTGS+NLWVPS KC + C Y +
Sbjct: 128 DNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT-TAGCLTKHLYDSSK 186
Query: 128 SRTYTKI-VPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTK-EGLLP-FLALQFD 184
SRTY K +++Y SG +SGFFS+D V +G++ + +F+EV G P + A FD
Sbjct: 187 SRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLP-YKFIEVIDTNGFEPTYTASTFD 245
Query: 185 GILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFR 244
GILGLG++D++ G+ P+ + Q I +F+ +L + + G + GG + R +
Sbjct: 246 GILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYL--PVHDKHTGFLTIGGIEERFYE 303
Query: 245 GSHIYVPITEKGYWQI----KVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQI 300
G Y + YWQI VG+I++E ++ I+DSGTS + PT + ++
Sbjct: 304 GPLTYEKLNHDLYWQITLDAHVGNIMLEKAN---------CIVDSGTSAITVPTDFLNKM 354
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 409 EVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDV 468
+V+ P ++ + + +P FT N + L PE Y+ IE+ +C+ I LD
Sbjct: 359 DVIKVPFLPFYVTLCNNSKLPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDF 418
Query: 469 PPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEAA 503
P P ++LGD F+R Y TVFD+ N +G A A
Sbjct: 419 PVPT---FILGDPFMRKYFTVFDYDNHSVGIALAK 450
>pdb|1QS8|A Chain A, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
pdb|1QS8|B Chain B, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
Length = 329
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 131/236 (55%), Gaps = 14/236 (5%)
Query: 68 DVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARL 127
DV+ L++ + +YGE +G Q F ++FDTGS+NLWVPS KC S C + + Y +
Sbjct: 6 DVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCN-SSGCSIKNLYDSSK 64
Query: 128 SRTYTKI-VPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTK-EGLLP-FLALQFD 184
S++Y K I YGSG + GFFS+D V +G + + +F+EV + L P + +++FD
Sbjct: 65 SKSYEKDGTKVDITYGSGTVKGFFSKDLVTLGHLSMP-YKFIEVIDTDDLEPIYSSVEFD 123
Query: 185 GILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEV-GGEIIFGGFDWRHF 243
GILGLG++D++ G+ P+ + Q I +F+ +L P +V G + GG + + +
Sbjct: 124 GILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYL---PVHDVHAGYLTIGGIEEKFY 180
Query: 244 RGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQ 299
G+ Y + YWQI + D+ + + I+DSGT+ + P+ + +
Sbjct: 181 EGNITYEKLNHDLYWQIDL-DVHFGKQTM----EKANVIVDSGTTTITAPSEFLNK 231
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 422 CDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPLWVLGDM 481
CD+ MP + F N ++ L PE Y+ I E T+C+ + +D+ ++LGD
Sbjct: 251 CDN-KEMPTLEFKSANNTYTLEPEYYMNPILEVDDTLCMITMLPVDI---DSNTFILGDP 306
Query: 482 FLRAYHTVFDFGNLQIGFAEA 502
F+R Y TVFD+ +GFA A
Sbjct: 307 FMRKYFTVFDYDKESVGFAIA 327
>pdb|1SME|A Chain A, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1SME|B Chain B, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1ME6|A Chain A, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1ME6|B Chain B, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1XE5|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE5|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|2IGX|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|B Chain B, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2R9B|A Chain A, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
pdb|2R9B|B Chain B, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
Length = 329
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 130/240 (54%), Gaps = 20/240 (8%)
Query: 68 DVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARL 127
D + L ++ + +YG+ +G Q F+ + DTGS+NLWVPS KC + C Y +
Sbjct: 4 DNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT-TAGCLTKHLYDSSK 62
Query: 128 SRTYTKI-VPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTK-EGLLP-FLALQFD 184
SRTY K +++Y SG +SGFFS+D V +G++ + +F+EV G P + A FD
Sbjct: 63 SRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLP-YKFIEVIDTNGFEPTYTASTFD 121
Query: 185 GILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFR 244
GILGLG++D++ G+ P+ + Q I +F+ +L + + G + GG + R +
Sbjct: 122 GILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPV--HDKHTGFLTIGGIEERFYE 179
Query: 245 GSHIYVPITEKGYWQI----KVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQI 300
G Y + YWQI VG+I++E ++ I+DSGTS + PT + ++
Sbjct: 180 GPLTYEKLNHDLYWQITLDAHVGNIMLEKAN---------CIVDSGTSAITVPTDFLNKM 230
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 409 EVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDV 468
+V+ P ++ + + +P FT N + L PE Y+ IE+ +C+ I LD
Sbjct: 235 DVIKVPFLPFYVTLCNNSKLPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDF 294
Query: 469 PPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEA 502
P P ++LGD F+R Y TVFD+ N +G A A
Sbjct: 295 PVPT---FILGDPFMRKYFTVFDYDNHSVGIALA 325
>pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|B Chain B, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|C Chain C, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|D Chain D, Proplasmepsin Ii From Plasmodium Falciparum
Length = 380
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 130/240 (54%), Gaps = 20/240 (8%)
Query: 68 DVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARL 127
D + L ++ + +YG+ +G Q F+ + DTGS+NLWVPS KC + C Y +
Sbjct: 55 DNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT-TAGCLTKHLYDSSK 113
Query: 128 SRTYTKI-VPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTK-EGLLP-FLALQFD 184
SRTY K +++Y SG +SGFFS+D V +G++ + +F+EV G P + A FD
Sbjct: 114 SRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLP-YKFIEVIDTNGFEPTYTASTFD 172
Query: 185 GILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFR 244
GILGLG++D++ G+ P+ + Q I +F+ +L + + G + GG + R +
Sbjct: 173 GILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYL--PVHDKHTGFLTIGGIEERFYE 230
Query: 245 GSHIYVPITEKGYWQI----KVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQI 300
G Y + YWQI VG+I++E ++ I+DSGTS + PT + ++
Sbjct: 231 GPLTYEKLNHDLYWQITLDAHVGNIMLEKAN---------CIVDSGTSAITVPTDFLNKM 281
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 409 EVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDV 468
+V+ P ++ + + +P FT N + L PE Y+ IE+ +C+ I LD
Sbjct: 286 DVIKVPFLPFYVTLCNNSKLPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDF 345
Query: 469 PPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEA 502
P P ++LGD F+R Y TVFD+ N +G A A
Sbjct: 346 PVPT---FILGDPFMRKYFTVFDYDNHSVGIALA 376
>pdb|1LF3|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Eh58
pdb|1LF4|A Chain A, Structure Of Plasmepsin Ii
pdb|1XDH|A Chain A, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1XDH|B Chain B, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1W6H|A Chain A, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6H|B Chain B, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6I|A Chain A, Plasmepsin Ii-Pepstatin A Complex
pdb|1W6I|C Chain C, Plasmepsin Ii-Pepstatin A Complex
Length = 331
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 130/240 (54%), Gaps = 20/240 (8%)
Query: 68 DVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARL 127
D + L ++ + +YG+ +G Q F+ + DTGS+NLWVPS KC + C Y +
Sbjct: 6 DNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT-TAGCLTKHLYDSSK 64
Query: 128 SRTYTKI-VPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTK-EGLLP-FLALQFD 184
SRTY K +++Y SG +SGFFS+D V +G++ + +F+EV G P + A FD
Sbjct: 65 SRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLP-YKFIEVIDTNGFEPTYTASTFD 123
Query: 185 GILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFR 244
GILGLG++D++ G+ P+ + Q I +F+ +L + + G + GG + R +
Sbjct: 124 GILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPV--HDKHTGFLTIGGIEERFYE 181
Query: 245 GSHIYVPITEKGYWQI----KVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQI 300
G Y + YWQI VG+I++E ++ I+DSGTS + PT + ++
Sbjct: 182 GPLTYEKLNHDLYWQITLDAHVGNIMLEKAN---------CIVDSGTSAITVPTDFLNKM 232
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 409 EVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDV 468
+V+ P ++ + + +P FT N + L PE Y+ IE+ +C+ I LD
Sbjct: 237 DVIKVPFLPFYVTLCNNSKLPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDF 296
Query: 469 PPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEA 502
P P ++LGD F+R Y TVFD+ N +G A A
Sbjct: 297 PVPT---FILGDPFMRKYFTVFDYDNHSVGIALA 327
>pdb|3F9Q|A Chain A, Re-Refinement Of Uncomplexed Plasmepsin Ii From Plasmodium
Falciparum
Length = 329
Score = 125 bits (314), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 129/240 (53%), Gaps = 20/240 (8%)
Query: 68 DVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARL 127
D + L ++ + +YG+ +G Q F+ + DTGS+NLWVPS KC + C Y +
Sbjct: 4 DNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT-TAGCLTKHLYDSSK 62
Query: 128 SRTYTKI-VPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTK-EGLLP-FLALQFD 184
SRTY K +++Y SG +SGFFS+D V +G++ + +F+EV G P + A FD
Sbjct: 63 SRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLP-YKFIEVIDTNGFEPTYTASTFD 121
Query: 185 GILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFR 244
GILGLG++D++ G+ P+ + Q I +F+ +L + + G + GG + R +
Sbjct: 122 GILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPV--HDKHTGFLTIGGIEERFYE 179
Query: 245 GSHIYVPITEKGYWQI----KVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQI 300
G Y + YWQI VG+I +E ++ I+DSGTS + PT + ++
Sbjct: 180 GPLTYEKLNHDLYWQITLDAHVGNISLEKAN---------CIVDSGTSAITVPTDFLNKM 230
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 409 EVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDV 468
+V+ P ++ + + +P FT N + L PE Y+ IE+ +C+ I LD
Sbjct: 235 DVIKVPFLPFYVTLCNNSKLPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDF 294
Query: 469 PPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEA 502
P P ++LGD F+R Y TVFD+ N +G A A
Sbjct: 295 PVPT---FILGDPFMRKYFTVFDYDNHSVGIALA 325
>pdb|1M43|A Chain A, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1M43|B Chain B, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1LEE|A Chain A, Crystal Structure Of Plasmepsin From P. Falciparum In
Complex With Inhibitor Rs367
pdb|1LF2|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Rs370
Length = 331
Score = 125 bits (313), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 129/240 (53%), Gaps = 20/240 (8%)
Query: 68 DVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARL 127
D + L ++ + +YG+ +G Q F+ + DTGS+NLWVPS KC + C Y +
Sbjct: 6 DNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT-TAGCLTKHLYDSSK 64
Query: 128 SRTYTKI-VPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTK-EGLLP-FLALQFD 184
SRTY K +++Y SG +SGFFS+D V +G++ + +F+EV G P + A FD
Sbjct: 65 SRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLP-YKFIEVIDTNGFEPTYTASTFD 123
Query: 185 GILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFR 244
GILGLG++D++ G+ P+ + Q I +F+ +L + + G + GG + R +
Sbjct: 124 GILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPV--HDKHTGFLTIGGIEERFYE 181
Query: 245 GSHIYVPITEKGYWQI----KVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQI 300
G Y + YWQI VG+I +E ++ I+DSGTS + PT + ++
Sbjct: 182 GPLTYEKLNHDLYWQITLDAHVGNISLEKAN---------CIVDSGTSAITVPTDFLNKM 232
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 409 EVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDV 468
+V+ P ++ + + +P FT N + L PE Y+ IE+ +C+ I LD
Sbjct: 237 DVIKVPFLPFYVTLCNNSKLPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDF 296
Query: 469 PPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEA 502
P P ++LGD F+R Y TVFD+ N +G A A
Sbjct: 297 PVPT---FILGDPFMRKYFTVFDYDNHSVGIALA 327
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/253 (37%), Positives = 137/253 (54%), Gaps = 17/253 (6%)
Query: 77 DAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP 136
D +YYG++ IG+P + F++ FDTGSS+LW+ S+ C S ++Y S TY
Sbjct: 14 DIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSG--QTKYDPNQSSTYQADGR 71
Query: 137 C-KIHYGSG-QISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDI 194
I YG G SG ++DNV +G ++IK Q +E+ K F + DG+LGLGF I
Sbjct: 72 TWSISYGDGSSASGILAKDNVNLGGLLIKGQT-IELAKREAASFASGPNDGLLGLGFDTI 130
Query: 195 AA--GNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIYVPI 252
G TP+ N++ QG IS+ IF ++L + N GE IFGG+D F+GS VPI
Sbjct: 131 TTVRGVKTPM-DNLISQGLISRPIFGVYLGKAKNGGG-GEYIFGGYDSTKFKGSLTTVPI 188
Query: 253 -TEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGA----E 307
+G+W I V + S+ DG ILD+GT++L P + A + A GA +
Sbjct: 189 DNSRGWWGITVDRATVGTSTVASSFDG---ILDTGTTLLILPNNIAASVARAYGASDNGD 245
Query: 308 GIVSMQCKTVVFE 320
G ++ C T F+
Sbjct: 246 GTYTISCDTSAFK 258
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 15/94 (15%)
Query: 413 NPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQ 472
N G I+CD A P V F+I SF +SP+ +F+ +G CI+GF +
Sbjct: 243 NGDGTYTISCDTSAFKPLV-FSINGASFQVSPDSLVFEEFQGQ---CIAGFGYGN----- 293
Query: 473 GPLW---VLGDMFLRAYHTVFDFGNLQIGFAEAA 503
W ++GD FL+ + VF+ G ++ A A
Sbjct: 294 ---WGFAIIGDTFLKNNYVVFNQGVPEVQIAPVA 324
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 138/254 (54%), Gaps = 19/254 (7%)
Query: 77 DAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISC-YLHSRYRARLSRTYTKIV 135
D +YYG++ IG+P + F++ FDTGSS+LW+ S+ C +C ++Y S TY
Sbjct: 14 DIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLC---TNCGSRQTKYDPNQSSTYQADG 70
Query: 136 PC-KIHYGSG-QISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRD 193
I YG G SG ++DNV +G ++IK Q +E+ K F + DG+LGLGF
Sbjct: 71 RTWSISYGDGSSASGILAKDNVNLGGLLIKGQT-IELAKREAASFASGPNDGLLGLGFDT 129
Query: 194 IAA--GNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIYVP 251
I G TP+ N++ QG IS+ IF ++L + N GE IFGG+D F+GS VP
Sbjct: 130 ITTVRGVKTPM-DNLISQGLISRPIFGVYLGKAKNGGG-GEYIFGGYDSTKFKGSLTTVP 187
Query: 252 I-TEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGA---- 306
I +G+W I V + S+ DG ILD+GT++L P + A + A GA
Sbjct: 188 IDNSRGWWGITVDRATVGTSTVASSFDG---ILDTGTTLLILPNNIAASVARAYGASDNG 244
Query: 307 EGIVSMQCKTVVFE 320
+G ++ C T F+
Sbjct: 245 DGTYTISCDTSRFK 258
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 413 NPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQ 472
N G I+CD P V F+I SF +SP+ +F+ +G CI+GF +
Sbjct: 243 NGDGTYTISCDTSRFKPLV-FSINGASFQVSPDSLVFEEFQGQ---CIAGFGYGNW---- 294
Query: 473 GPLWVLGDMFLRAYHTVFDFGNLQIGFAEAA 503
++GD FL+ + VF+ G ++ A A
Sbjct: 295 -DFAIIGDTFLKNNYVVFNQGVPEVQIAPVA 324
>pdb|3QVC|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) Zymogen
From Plasmodium Falciparum
pdb|3QVI|A Chain A, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|B Chain B, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|C Chain C, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|D Chain D, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
Length = 451
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 136/274 (49%), Gaps = 12/274 (4%)
Query: 29 SHGLLRIQLKKRQLGINTINAARLITKNEVHNRFNHPKADVVYLNNYLDAQYYGEIGIGS 88
S+ L +K+ +L + +L K + + D V L + + +GE +G
Sbjct: 88 SYDRLMKTIKEHKLKNYIKESVKLFNKGLTKKSYLGSEFDNVELKDLANVLSFGEAKLGD 147
Query: 89 PPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTK-IVPCKIHYGSGQIS 147
Q F+ +F T SSN+WVPS KC S SC + Y + S+TY K P K+ +G IS
Sbjct: 148 NGQKFNFLFHTASSNVWVPSIKCT-SESCESKNHYDSSKSKTYEKDDTPVKLTSKAGTIS 206
Query: 148 GFFSQDNVKIGDMIIKDQEFVEVTK-EGLLPFLA-LQFDGILGLGFRDIAAGNATPLWYN 205
G FS+D V IG + + +F+E+T+ G PF + DG+ GLG++D++ G+ P
Sbjct: 207 GIFSKDLVTIGKLSVP-YKFIEMTEIVGFEPFYSESDVDGVFGLGWKDLSIGSIDPYIVE 265
Query: 206 MVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDI 265
+ Q I Q ++S++L P ++ G + GG + R F G Y + WQ+ + D+
Sbjct: 266 LKTQNKIEQAVYSIYL--PPENKNKGYLTIGGIEERFFDGPLNYEKLNHDLMWQVDL-DV 322
Query: 266 LIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQ 299
N S+ ILDS TSV+ PT Q
Sbjct: 323 HFGNVSS----KKANVILDSATSVITVPTEFFNQ 352
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 426 ASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPLWVLGDMFLRA 485
+P + + N+ + L P+QY+ +E S +C+ + +D+ + +VLGD F+R
Sbjct: 375 TKLPTLEYRSPNKVYTLEPKQYLEPLENIFSALCMLNIVPIDL---EKNTFVLGDPFMRK 431
Query: 486 YHTVFDFGNLQIGFAEA 502
Y TV+D+ N +GFA A
Sbjct: 432 YFTVYDYDNHTVGFALA 448
>pdb|3FNS|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) From
Plasmodium Falciparum
pdb|3FNS|B Chain B, Crystal Structure Of Histo-Aspartic Protease (Hap) From
Plasmodium Falciparum
pdb|3FNT|A Chain A, Crystal Structure Of Pepstatin A Bound Histo-aspartic
Protease (hap) From Plasmodium Falciparum
pdb|3FNU|A Chain A, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|B Chain B, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|C Chain C, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|D Chain D, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
Length = 332
Score = 118 bits (295), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 122/235 (51%), Gaps = 12/235 (5%)
Query: 68 DVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARL 127
D V L + + +GE +G Q F+ +F T SSN+WVPS KC S SC + Y +
Sbjct: 8 DNVELKDLANVLSFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCT-SESCESKNHYDSSK 66
Query: 128 SRTYTK-IVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTK-EGLLPFLA-LQFD 184
S+TY K P K+ +G ISG FS+D V IG + + +F+E+T+ G PF + D
Sbjct: 67 SKTYEKDDTPVKLTSKAGTISGIFSKDLVTIGKLSVP-YKFIEMTEIVGFEPFYSESDVD 125
Query: 185 GILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFR 244
G+ GLG++D++ G+ P + Q I Q ++S++L P ++ G + GG + R F
Sbjct: 126 GVFGLGWKDLSIGSIDPYIVELKTQNKIEQAVYSIYL--PPENKNKGYLTIGGIEERFFD 183
Query: 245 GSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQ 299
G Y + WQ+ + D+ N S+ ILDS TSV+ PT Q
Sbjct: 184 GPLNYEKLNHDLMWQVDL-DVHFGNVSS----KKANVILDSATSVITVPTEFFNQ 233
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 426 ASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPLWVLGDMFLRA 485
+P + + N+ + L P+QY+ +E S +C+ + +D+ + +VLGD F+R
Sbjct: 256 TKLPTLEYRSPNKVYTLEPKQYLEPLENIFSALCMLNIVPIDL---EKNTFVLGDPFMRK 312
Query: 486 YHTVFDFGNLQIGFAEA 502
Y TV+D+ N +GFA A
Sbjct: 313 YFTVYDYDNHTVGFALA 329
>pdb|1B5F|B Chain B, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|D Chain D, Native Cardosin A From Cynara Cardunculus L
Length = 87
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 51/84 (60%), Positives = 67/84 (79%), Gaps = 1/84 (1%)
Query: 420 INCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPLWVLG 479
++C+ ++SMP VSFTIG + F L+PEQYI K+ +G +T CISGF A+D GPLW+LG
Sbjct: 5 VDCNTLSSMPNVSFTIGGKKFGLTPEQYILKVGKGEATQCISGFTAMDA-TLLGPLWILG 63
Query: 480 DMFLRAYHTVFDFGNLQIGFAEAA 503
D+F+R YHTVFD+GNL +GFAEAA
Sbjct: 64 DVFMRPYHTVFDYGNLLVGFAEAA 87
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5
pdb|1LYW|C Chain C, Cathepsin D At Ph 7.5
pdb|1LYW|E Chain E, Cathepsin D At Ph 7.5
pdb|1LYW|G Chain G, Cathepsin D At Ph 7.5
pdb|1LYA|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 97
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 65/88 (73%), Gaps = 2/88 (2%)
Query: 72 LNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKC-LFSISCYLHSRYRARLSRT 130
L NY+DAQYYGEIGIG+PPQ F+VVFDTGSSNLWVPS C L I+C++H +Y + S T
Sbjct: 7 LKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSDKSST 66
Query: 131 YTKI-VPCKIHYGSGQISGFFSQDNVKI 157
Y K IHYGSG +SG+ SQD V +
Sbjct: 67 YVKNGTSFDIHYGSGSLSGYLSQDTVSV 94
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 109/221 (49%), Gaps = 22/221 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVP--SSKCLFSIS------CYLHSRYRARLSRTY 131
Y +I +GS Q +V+ DTGSS+LWVP + C + S C Y S
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKGTYDPSGSSAS 73
Query: 132 TKI-VPCKIHYGSGQIS-GFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGL 189
+ P KI YG G S G +D V G + IK+Q +V + GILG+
Sbjct: 74 QDLNTPFKIGYGDGSSSQGTLYKDTVGFGGVSIKNQVLADVDSTSIDQ-------GILGV 126
Query: 190 GFR-DIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHI 248
G++ + A G+ + + +QG I++ +SL+LN P++ G+IIFGG D + GS I
Sbjct: 127 GYKTNEAGGSYDNVPVTLKKQGVIAKNAYSLYLNS-PDAAT-GQIIFGGVDNAKYSGSLI 184
Query: 249 YVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSV 289
+P+T +I +G +E S D +LDSGT++
Sbjct: 185 ALPVTSDRELRISLGS--VEVSGKTINTDNVDVLLDSGTTI 223
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
pdb|2QZX|B Chain B, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
Length = 342
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 125/272 (45%), Gaps = 41/272 (15%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCL--------FSISCYLHSRYRARLSRTY 131
Y +I +GS Q +V+ DTGSS+LW+P S + C Y SRT
Sbjct: 14 YTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDFCKSAGSYSPASSRTS 73
Query: 132 TKI-VPCKIHYGSGQIS-GFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGL 189
+ I YG G + G +D V IG + ++DQ F V + GILG+
Sbjct: 74 QNLNTRFDIKYGDGSYAKGKLYKDTVGIGGVSVRDQLFANV-------WSTSARKGILGI 126
Query: 190 GFRDIAAGNATPLWYN-----MVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFR 244
GF+ +G AT Y+ + QG I + +SL+LN S G+IIFGG D +
Sbjct: 127 GFQ---SGEATEFDYDNLPISLRNQGIIGKAAYSLYLNSAEAST--GQIIFGGIDKAKYS 181
Query: 245 GSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAI 304
GS + +PIT + + + + + + + +LDSGT++ ++V I +AI
Sbjct: 182 GSLVDLPITSEKKLTVGLRSVNVRGRN---VDANTNVLLDSGTTISYFTRSIVRNILYAI 238
Query: 305 GAE--------GIVSMQCK---TVVFEYGNMI 325
GA+ + CK T+ F++GN +
Sbjct: 239 GAQMKFDSAGNKVYVADCKTSGTIDFQFGNNL 270
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 117/250 (46%), Gaps = 26/250 (10%)
Query: 70 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSIS--------CYLHS 121
V LNN Y +I IGS Q F+V+ DTGSS+LWVP + C
Sbjct: 5 VTLNNE-HVSYAADITIGSNKQKFNVIVDTGSSDLWVPDASVTCDKPRPGQSADFCKGKG 63
Query: 122 RYRARLSRTYTKI-VPCKIHYGSGQIS-GFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFL 179
Y + S T + P I YG G S G +D V G I Q F ++TK +
Sbjct: 64 IYTPKSSTTSQNLGTPFYIGYGDGSSSQGTLYKDTVGFGGASITKQVFADITKTSIP--- 120
Query: 180 ALQFDGILGLGFR-DIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGF 238
GILG+G++ + AAG+ + + QG I++ +SL+LN PN+ G+IIFGG
Sbjct: 121 ----QGILGIGYKTNEAAGDYDNVPVTLKNQGVIAKNAYSLYLNS-PNAAT-GQIIFGGV 174
Query: 239 DWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDG-CTAILDSGTSVLAGPTTVV 297
D + GS I VP+T +I + + + G +G +LDSGT++ V
Sbjct: 175 DKAKYSGSLIAVPVTSDRELRITLNSL----KAVGKNINGNIDVLLDSGTTITYLQQDVA 230
Query: 298 AQINHAIGAE 307
I A AE
Sbjct: 231 QDIIDAFQAE 240
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 107/221 (48%), Gaps = 22/221 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSK--CLFSIS------CYLHSRYRARLSRTY 131
Y +I +GS Q +V+ DTGSS+LWVP C + S C Y S
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNIDCQVTYSDQTADFCKQKGTYDPSGSSAS 73
Query: 132 TKI-VPCKIHYGSGQIS-GFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGL 189
+ P I YG G S G +D V G + IK+Q +V + GILG+
Sbjct: 74 QDLNTPFSIGYGDGSSSQGTLYKDTVGFGGVSIKNQVLADVDSTSIDQ-------GILGV 126
Query: 190 GFR-DIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHI 248
G++ + A G+ + + +QG I++ +SL+LN P+S G+IIFGG D + GS I
Sbjct: 127 GYKTNEAGGSYDNVPVTLKKQGVIAKNAYSLYLNS-PDSAT-GQIIFGGVDNAKYSGSLI 184
Query: 249 YVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSV 289
+P+T +I +G +E S D +LDSGT++
Sbjct: 185 ALPVTSDRELRISLGS--VEVSGKTINTDNVDVLLDSGTTI 223
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 113/242 (46%), Gaps = 26/242 (10%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSS--KCLFSISCYLHSRYRARLSRTYTKI-VP 136
Y ++ +GS Q +V+ DTGSS+ WV S +C + C + S +Y +
Sbjct: 14 YASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDCKSSGTFTPSSSSSYKNLGAA 73
Query: 137 CKIHYGSGQIS-GFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFR--- 192
I YG G S G + +D V I + I Q+ +VT+ + GILG+G+
Sbjct: 74 FTIRYGDGSTSQGTWGKDTVTINGVSITGQQIADVTQTSVDQ-------GILGIGYTSNE 126
Query: 193 ---DIAAGNATPLWYN----MVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRG 245
D + TP + N + +QG I +SL+LN P++E G IIFGG D + G
Sbjct: 127 AVYDTSGRQTTPNYDNVPVTLKKQGKIRTNAYSLYLNS-PSAET-GTIIFGGVDNAKYSG 184
Query: 246 SHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIG 305
+ +T I + + ++ SS F G A+LDSGT++ P+ AQ+ G
Sbjct: 185 KLVAEQVTSSQALTISLASVNLKGSSFSF---GDGALLDSGTTLTYFPSDFAAQLADKAG 241
Query: 306 AE 307
A
Sbjct: 242 AR 243
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans
pdb|2H6T|A Chain A, Secreted Aspartic Proteinase (Sap) 3 From Candida Albicans
Complexed With Pepstatin A
Length = 340
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 105/224 (46%), Gaps = 30/224 (13%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSR---TYTKIV- 135
Y +I +GS Q +VV DTGSS+LWVP S+ +SC + TY+
Sbjct: 14 YASDITVGSNKQKLTVVIDTGSSDLWVPDSQ----VSCQAGQGQDPNFCKNEGTYSPSSS 69
Query: 136 --------PCKIHYGSGQIS-GFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGI 186
P I YG G S G + +D + G + I Q+F +VT + GI
Sbjct: 70 SSSQNLNSPFSIEYGDGTTSQGTWYKDTIGFGGISITKQQFADVTSTSVDQ-------GI 122
Query: 187 LGLGFRD-IAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRG 245
LG+G++ A GN + + QG IS+ +SL+LN G+IIFGG D + G
Sbjct: 123 LGIGYKTHEAEGNYDNVPVTLKNQGIISKNAYSLYLN--SRQATSGQIIFGGVDNAKYSG 180
Query: 246 SHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSV 289
+ I +P+T +I + + + S D +LDSGT++
Sbjct: 181 TLIALPVTSDNELRIHLNTVKVAGQSINADVD---VLLDSGTTI 221
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 109/241 (45%), Gaps = 19/241 (7%)
Query: 79 QYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKI-VPC 137
+Y + IG+P Q F ++FDTGSS+ WVP C S C + S T+
Sbjct: 19 EYAIPVSIGTPGQDFLLLFDTGSSDTWVPHKGCTKSEGCVGSRFFDPSASSTFKATNYNL 78
Query: 138 KIHYGSGQISGFFSQDNVKIGDMIIKDQ-----EFVEVTKEGLLPFLALQFDGILGLGFR 192
I YG+G +G + +D++ IGD+ + Q + V P + DG+ G +
Sbjct: 79 NITYGTGGANGLYFEDSIAIGDITVTKQILAYVDNVRGPTAEQSPNADIFLDGLFGAAYP 138
Query: 193 DIAAGNA------TPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGS 246
D A A + N+ +QG IS +FS+++N + + GE++FGG + G
Sbjct: 139 DNTAMEAEYGSTYNTVHVNLYKQGLISSPLFSVYMNTNSGT---GEVVFGGVNNTLLGGD 195
Query: 247 HIYVPITEK--GY--WQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINH 302
Y + + GY W V I ++ S+ +D+GT+ P++ ++I
Sbjct: 196 IAYTDVMSRYGGYYFWDAPVTGITVDGSAAVRFSRPQAFTIDTGTNFFIMPSSAASKIVK 255
Query: 303 A 303
A
Sbjct: 256 A 256
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 470 PPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEAA 503
P G +++G++FLR + V+DFGN +IGFA A
Sbjct: 322 PDGGNQYIVGNLFLRFFVNVYDFGNNRIGFAPLA 355
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1
pdb|2Q11|B Chain B, Structure Of Bace Complexed To Compound 1
pdb|2Q11|C Chain C, Structure Of Bace Complexed To Compound 1
Length = 388
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 115/243 (47%), Gaps = 22/243 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 17 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 71
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 72 VPYTQGKWEGELGTDLVSIPHGPQVTVRANIAAITESDKFFIQGSNWEGILGLAYAEIAR 131
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLWL--------NQDPNSEVGGEIIFGGFDWRHFRGS 246
+ + P + ++V+Q H+ +FSL L + + VGG +I GG D + GS
Sbjct: 132 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLQQSEVLASVGGSMIIGGIDHSLYTGS 190
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 303
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 191 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 250
Query: 304 IGA 306
I A
Sbjct: 251 IKA 253
>pdb|2VIE|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-1-Benzyl-2-Hydroxy-
3-((1,1,
5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2-
Oxopyrrolidin-1-Yl)benzamide
pdb|2VIJ|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(1,2,3,4-Tetrahydro-1-Naphthalenylamino)
Propyl)benzamide
pdb|2VIY|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Pentylsulfonyl)benzamide
pdb|2VIZ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-methyl-2-oxoethyl)amino)-2-hydroxy-1-
(
Phenylmethyl)propyl)-3-(2-oxo-1-pyrrolidinyl)-5-
(propyloxy) Benzamide
pdb|2VJ6|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2VJ7|A Chain A, Human Bace-1 In Complex With 3-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-1-(Phenylmethyl)-3-(((3-(Trifluoromethyl)phenyl)
Methyl)amino)propyl)-5-(2-Oxo-1-Pyrrolidinyl)benzamide
pdb|2VJ9|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-3-(Cyclohexylamino)-
2-Hydroxy-1-(Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-
Oxo- 1-Pyrrolidinyl)benzamide
pdb|2VNM|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino) Propyl)benzamide
pdb|2VNN|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF4|A Chain A, Human Bace-1 In Complex With
6-Ethyl-1-Methyl-N-((1s)-2-Oxo-
1-(Phenylmethyl)-3-(Tetrahydro-2h-Pyran-4-
Ylamino)propyl)-
1,3,4,6-Tetrahydro(1,2)thiazepino(5,4,3-Cd)indole-8-
Carboxamide 2,2-Dioxide
pdb|2WEZ|A Chain A, Human Bace-1 In Complex With
1-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-4-(2-Oxo-1-Pyrrolidinyl)-1h-Indole-6-Carboxamide
pdb|2WF0|A Chain A, Human Bace-1 In Complex With
4-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-8-(2-Oxo-1-Pyrrolidinyl)-6-Quinolinecarboxamide
pdb|2WF1|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl(Methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF2|A Chain A, Human Bace-1 In Complex With
8-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4,7,8-Tetrahydro-1h,6h-(1,2,5)
Thiadiazepino(5,4,3-De)quinoxaline-10-Carboxamide 2,2-
Dioxide
pdb|2WF3|A Chain A, Human Bace-1 In Complex With 6-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-3-(((3-(Methyloxy)phenyl)methyl)amino)-1-(
Phenylmethyl)propyl)-1-Methyl-1,3,4,5-Tetrahydro-2,1-
Benzothiazepine-8-Carboxamide 2,2-Dioxide
pdb|2XFI|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-((Methylsulfonyl)(Phenyl)amino)
Benzamide
pdb|2XFJ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2XFK|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
(
Phenylmethyl)propyl)-3-(Ethylamino)-5-((Methylsulfonyl)(
Phenyl)amino)benzamide
Length = 392
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 115/243 (47%), Gaps = 22/243 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 15 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 69
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 70 VPYTQGKWEGELGTDLVSIPHGPQVTVRANIAAITESDKFFIQGSNWEGILGLAYAEIAR 129
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLWL--------NQDPNSEVGGEIIFGGFDWRHFRGS 246
+ + P + ++V+Q H+ +FSL L + + VGG +I GG D + GS
Sbjct: 130 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLQQSEVLASVGGSMIIGGIDHSLYTGS 188
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 303
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 189 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 248
Query: 304 IGA 306
I A
Sbjct: 249 IKA 251
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a
Length = 385
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 115/243 (47%), Gaps = 22/243 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 14 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 68
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 69 VPYTQGKWEGELGTDLVSIPHGPQVTVRANIAAITESDKFFIQGSNWEGILGLAYAEIAR 128
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLWL--------NQDPNSEVGGEIIFGGFDWRHFRGS 246
+ + P + ++V+Q H+ +FSL L + + VGG +I GG D + GS
Sbjct: 129 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLQQSEVLASVGGSMIIGGIDHSLYTGS 187
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 303
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 188 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 247
Query: 304 IGA 306
I A
Sbjct: 248 IKA 250
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
pdb|4EXG|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
Length = 386
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 22/243 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 15 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 69
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 70 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 129
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 246
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 130 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 188
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 303
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 189 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 248
Query: 304 IGA 306
I A
Sbjct: 249 IKA 251
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1
pdb|3BUF|A Chain A, Bace-1 Complexed With Compound 2
pdb|3BUG|A Chain A, Bace-1 Complexed With Compound 3
pdb|3BUH|A Chain A, Bace-1 Complexed With Compound 4
Length = 409
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 119/248 (47%), Gaps = 26/248 (10%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 84
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 85 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 144
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 246
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 145 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 203
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTV----VAQ 299
Y PI + Y+++ + + I C++ +I+DSGT+ L P V VA
Sbjct: 204 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVAS 263
Query: 300 INHAIGAE 307
I A E
Sbjct: 264 IKAASSTE 271
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With
Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h-
Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide
Length = 412
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 22/243 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 72
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 73 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 132
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 246
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 133 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 191
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 303
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 192 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 251
Query: 304 IGA 306
I A
Sbjct: 252 IKA 254
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|B Chain B, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|C Chain C, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|3IXJ|A Chain A, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|B Chain B, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|C Chain C, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|4GID|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|C Chain C, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|D Chain D, Structure Of Beta-Secretase Complexed With Inhibitor
Length = 388
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 22/243 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 17 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 71
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 72 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 131
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 246
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 132 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 190
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 303
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 191 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 250
Query: 304 IGA 306
I A
Sbjct: 251 IKA 253
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596
pdb|3CIB|B Chain B, Structure Of Bace Bound To Sch727596
pdb|3CIC|A Chain A, Structure Of Bace Bound To Sch709583
pdb|3CIC|B Chain B, Structure Of Bace Bound To Sch709583
pdb|3CID|A Chain A, Structure Of Bace Bound To Sch726222
pdb|3CID|B Chain B, Structure Of Bace Bound To Sch726222
pdb|4FS4|A Chain A, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
pdb|4FS4|B Chain B, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
Length = 390
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 22/243 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 72
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 73 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 132
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 246
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 133 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 191
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 303
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 192 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 251
Query: 304 IGA 306
I A
Sbjct: 252 IKA 254
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1
pdb|3UDJ|A Chain A, Crystal Structure Of Bace With Compound 5
pdb|3UDK|A Chain A, Crystal Structure Of Bace With Compound 6
pdb|3UDM|A Chain A, Crystal Structure Of Bace With Compound 8
pdb|3UDN|A Chain A, Crystal Structure Of Bace With Compound 9
pdb|3UDP|A Chain A, Crystal Structure Of Bace With Compound 12
pdb|3UDQ|A Chain A, Crystal Structure Of Bace With Compound 13
pdb|3UDR|A Chain A, Crystal Structure Of Bace With Compound 14
pdb|3UDY|A Chain A, Crystal Structure Of Bace With Compound 11
pdb|4FM7|A Chain A, Crystal Structure Of Bace With Compound 14g
pdb|4FM8|A Chain A, Crystal Structure Of Bace With Compound 12a
Length = 404
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 22/243 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 72
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 73 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 132
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 246
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 133 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 191
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 303
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 192 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 251
Query: 304 IGA 306
I A
Sbjct: 252 IKA 254
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor
pdb|4DPI|A Chain A, Bace-1 In Complex With Hea-Macrocyclic Inhibitor, Mv078512
Length = 391
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 22/243 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 74
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 75 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 134
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 246
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 135 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 193
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 303
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 194 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 253
Query: 304 IGA 306
I A
Sbjct: 254 IKA 256
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase)
pdb|1W51|A Chain A, Bace (Beta Secretase) In Complex With A Nanomolar Non-
Peptidic Inhibitor
pdb|3RSV|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(R)-3-(2-Amino-6-
O-Tolylquinolin-3-Yl)-N-((R)-2,
2-Dimethyltetrahydro-2h-Pyran-4-Yl)-2- Methylpropanamide
pdb|3RSX|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(Thiophen-3- Yl)quinolin-2-Amine
pdb|3RTH|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(2-(3,3- Dimethylbut-1-Ynyl)phenyl)quinolin-2-Amine
pdb|3RTM|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-Cyclohexyl-N-Methylpropanamide
pdb|3RTN|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
3-(2-Amino-6-O-
Tolylquinolin-3-Yl)-N-Cyclohexylpropanamide
pdb|3RU1|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-(Cyclohexylmethyl)propanamide
pdb|3RVI|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
2-((2-Amino-6-O-
Tolylquinolin-3-Yl)methyl)-N-
(Cyclohexylmethyl)pentanamide
pdb|4ACU|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 14
pdb|4ACX|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 23
pdb|4DH6|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(2r)-N-((2s,3r)-
1-(Benzo[d][1,
3]dioxol-5-Yl)-3-Hydroxy-4-((S)-6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridine]-4'-Ylamino)
Butan-2-Yl)-2-Methoxypropanamide
pdb|4FRI|A Chain A, Crystal Structure Of Bace1 In Complex With Biarylspiro
Aminooxazoline 6
pdb|4FRJ|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 9l
pdb|4FRK|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 11a
pdb|4DI2|A Chain A, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|B Chain B, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|C Chain C, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DUS|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
N-((2s,3r)-1-(4-
Fluorophenyl)-3-Hydroxy-4-((6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridin]-4'-Yl)amino) Butan-2-Yl)acetamide
pdb|4AZY|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound 10)
pdb|4B00|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound
(R)-41)
pdb|4B05|A Chain A, Preclinical Characterization Of Azd3839, A Novel Clinical
Candidate Bace1 Inhibitor For The Treatment Of Alzheimer
Disease
Length = 411
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 22/243 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 33 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 87
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 88 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 147
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 246
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 148 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 206
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 303
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 207 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 266
Query: 304 IGA 306
I A
Sbjct: 267 IKA 269
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(2,
6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto-
Butyramide
Length = 405
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 22/243 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 89 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 246
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 149 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 303
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 267
Query: 304 IGA 306
I A
Sbjct: 268 IKA 270
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|4FSL|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
Length = 412
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 22/243 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 33 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 87
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 88 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 147
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 246
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 148 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 206
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 303
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 207 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 266
Query: 304 IGA 306
I A
Sbjct: 267 IKA 269
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432
pdb|3L58|B Chain B, Structure Of Bace Bound To Sch589432
pdb|3L59|A Chain A, Structure Of Bace Bound To Sch710413
pdb|3L59|B Chain B, Structure Of Bace Bound To Sch710413
pdb|3L5B|A Chain A, Structure Of Bace Bound To Sch713601
pdb|3L5B|B Chain B, Structure Of Bace Bound To Sch713601
pdb|3L5C|A Chain A, Structure Of Bace Bound To Sch723871
pdb|3L5C|B Chain B, Structure Of Bace Bound To Sch723871
pdb|3L5D|A Chain A, Structure Of Bace Bound To Sch723873
pdb|3L5D|B Chain B, Structure Of Bace Bound To Sch723873
pdb|3L5E|A Chain A, Structure Of Bace Bound To Sch736062
pdb|3L5E|B Chain B, Structure Of Bace Bound To Sch736062
pdb|3L5F|A Chain A, Structure Of Bace Bound To Sch736201
pdb|3L5F|B Chain B, Structure Of Bace Bound To Sch736201
pdb|4DJU|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJU|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJV|A Chain A, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJV|B Chain B, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJW|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJW|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJX|A Chain A, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJX|B Chain B, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJY|A Chain A, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4DJY|B Chain B, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4H1E|A Chain A, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H1E|B Chain B, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H3J|A Chain A, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4H3J|B Chain B, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4HA5|A Chain A, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4HA5|B Chain B, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4H3F|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3F|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3G|A Chain A, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3G|B Chain B, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3I|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3I|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
Length = 414
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 22/243 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 35 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 89
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 90 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 149
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 246
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 150 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 208
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 303
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 209 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 268
Query: 304 IGA 306
I A
Sbjct: 269 IKA 271
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor (2)
pdb|2IQG|A Chain A, Crystal Structure Of Hydroxyethyl Secondary Amine-Based
Peptidomimetic Inhibitor Of Human Beta-Secretase (Bace)
pdb|3IVH|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|B Chain B, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|C Chain C, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3NSH|A Chain A, Bace-1 In Complex With Eln475957
pdb|3NSH|B Chain B, Bace-1 In Complex With Eln475957
pdb|3NSH|C Chain C, Bace-1 In Complex With Eln475957
pdb|3N4L|A Chain A, Bace-1 In Complex With Eln380842
pdb|3N4L|B Chain B, Bace-1 In Complex With Eln380842
pdb|3N4L|C Chain C, Bace-1 In Complex With Eln380842
Length = 406
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 22/243 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 74
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 75 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 134
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 246
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 135 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 193
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 303
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 194 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 253
Query: 304 IGA 306
I A
Sbjct: 254 IKA 256
>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide
pdb|2ZJL|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Bromo-2,3-Dimethoxy-Benzyl)-Piperidin-
4-Yl]-4-Mercapto-Butyramide
Length = 405
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 22/243 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 89 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 246
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 149 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 303
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 267
Query: 304 IGA 306
I A
Sbjct: 268 IKA 270
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
pdb|4B1E|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 388
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 22/243 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 72
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 73 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 132
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 246
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 133 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 191
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 303
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 192 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 251
Query: 304 IGA 306
I A
Sbjct: 252 IKA 254
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HW1|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3MSJ|A Chain A, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|B Chain B, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|C Chain C, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
Length = 411
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 22/243 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 33 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 87
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 88 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 147
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 246
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 148 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 206
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 303
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 207 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 266
Query: 304 IGA 306
I A
Sbjct: 267 IKA 269
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|B Chain B, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|C Chain C, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|D Chain D, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1XS7|D Chain D, Crystal Structure Of A Cycloamide-Urethane-Derived Novel
Inhibitor Bound To Human Brain Memapsin 2
(Beta-Secretase).
pdb|1XN2|A Chain A, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|B Chain B, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|C Chain C, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|D Chain D, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN3|A Chain A, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|B Chain B, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|C Chain C, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|D Chain D, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|2G94|A Chain A, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|B Chain B, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|C Chain C, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|D Chain D, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2P4J|A Chain A, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|B Chain B, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|C Chain C, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|D Chain D, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2VKM|A Chain A, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|B Chain B, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|C Chain C, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|D Chain D, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|3UFL|A Chain A, Discovery Of Pyrrolidine-Based B-Secretase Inhibitors:
Lead Advancement Through Conformational Design For
Maintenance Of Ligand Binding Efficiency
Length = 389
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 22/243 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 72
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 73 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 132
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 246
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 133 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 191
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 303
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 192 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 251
Query: 304 IGA 306
I A
Sbjct: 252 IKA 254
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHR|B Chain B, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHS|A Chain A, Crystal Structure Of Bace1 At Ph 4.0
pdb|2ZHT|A Chain A, Crystal Structure Of Bace1 At Ph 4.5
pdb|2ZHU|A Chain A, Crystal Structure Of Bace1 At Ph 5.0
pdb|2ZHV|A Chain A, Crystal Structure Of Bace1 At Ph 7.0
Length = 411
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 22/243 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 32 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 86
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 87 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 146
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 246
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 147 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 205
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 303
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 206 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 265
Query: 304 IGA 306
I A
Sbjct: 266 IKA 268
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|B Chain B, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|C Chain C, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
Length = 390
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 22/243 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 19 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 73
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 74 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 133
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 246
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 134 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 192
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 303
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 193 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 252
Query: 304 IGA 306
I A
Sbjct: 253 IKA 255
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)-
Acetamide
pdb|3H0B|A Chain A, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|B Chain B, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|C Chain C, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
Length = 405
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 22/243 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 89 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 246
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 149 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 303
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 267
Query: 304 IGA 306
I A
Sbjct: 268 IKA 270
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|2F3E|A Chain A, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|B Chain B, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|C Chain C, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3F|A Chain A, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|B Chain B, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|C Chain C, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|3DUY|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DV1|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV5|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3K5C|A Chain A, Human Bace-1 Complex With Nb-216
pdb|3K5C|B Chain B, Human Bace-1 Complex With Nb-216
pdb|3K5C|C Chain C, Human Bace-1 Complex With Nb-216
pdb|3K5F|A Chain A, Human Bace-1 Complex With Ayh011
pdb|3K5F|B Chain B, Human Bace-1 Complex With Ayh011
pdb|3K5F|C Chain C, Human Bace-1 Complex With Ayh011
pdb|3K5G|A Chain A, Human Bace-1 Complex With Bjc060
pdb|3K5G|B Chain B, Human Bace-1 Complex With Bjc060
pdb|3K5G|C Chain C, Human Bace-1 Complex With Bjc060
pdb|3PI5|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3QBH|A Chain A, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|B Chain B, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|C Chain C, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3VEU|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Avi326
pdb|3VF3|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bqq711
pdb|3VG1|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Soaking Experiment
pdb|4D83|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D88|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxq490
pdb|4D89|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Soaking Experiment
pdb|4D8C|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
Length = 402
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 22/243 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 84
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 85 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 144
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 246
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 145 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 203
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 303
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 204 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 263
Query: 304 IGA 306
I A
Sbjct: 264 IKA 266
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6- ((1s,
2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One
pdb|3VV7|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-6-((1s,2r)-
2-(3'-Methoxybiphenyl-3-Yl)cyclopropyl)-3-
Methylpyrimidin-4(3h)-One
pdb|3VV8|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6-
((1s,
2r)-2-(3'-Methylbiphenyl-4-Yl)cyclopropyl)pyrimidin-
4(3h)-One
Length = 416
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 22/243 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 37 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 91
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 92 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 151
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 246
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 152 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 210
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 303
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 211 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 270
Query: 304 IGA 306
I A
Sbjct: 271 IKA 273
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An
Exosite- Binding Antibody
Length = 402
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 22/243 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 21 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 75
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 76 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 135
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 246
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 136 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 194
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 303
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 195 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 254
Query: 304 IGA 306
I A
Sbjct: 255 IKA 257
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1FKN|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1M4H|A Chain A, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
pdb|1M4H|B Chain B, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
Length = 391
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 22/243 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 74
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 75 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 134
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 246
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 135 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 193
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 303
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 194 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 253
Query: 304 IGA 306
I A
Sbjct: 254 IKA 256
>pdb|2QU2|A Chain A, Bace1 With Compound 1
pdb|2QU3|A Chain A, Bace1 With Compound 2
pdb|2ZDZ|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 3.B.10
pdb|2ZE1|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 6g
pdb|3IGB|A Chain A, Bace-1 With Compound 3
pdb|3IN3|A Chain A, Bace1 With Compound 30
pdb|3IN4|A Chain A, Bace1 With Compound 38
pdb|3IND|A Chain A, Bace1 With The Aminohydantoin Compound 29
pdb|3INE|A Chain A, Bace1 With The Aminohydantoin Compound S-34
pdb|3INF|A Chain A, Bace1 With The Aminohydantoin Compound 37
pdb|3INH|A Chain A, Bace1 With The Aminohydantoin Compound R-58
pdb|3LHG|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 4g
pdb|3L38|A Chain A, Bace1 In Complex With The Aminopyridine Compound 44
pdb|3L3A|A Chain A, Bace-1 With The Aminopyridine Compound 32
pdb|3OOZ|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 102
pdb|3S7L|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
pdb|3S7M|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
Length = 415
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 22/243 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 84
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 85 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 144
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 246
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 145 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 203
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 303
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 204 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 263
Query: 304 IGA 306
I A
Sbjct: 264 IKA 266
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485
pdb|2QK5|B Chain B, Structure Of Bace1 Bound To Sch626485
pdb|2QMD|A Chain A, Structure Of Bace Bound To Sch722924
pdb|2QMD|B Chain B, Structure Of Bace Bound To Sch722924
pdb|2QMF|A Chain A, Structure Of Bace Bound To Sch735310
pdb|2QMF|B Chain B, Structure Of Bace Bound To Sch735310
pdb|2QP8|A Chain A, Structure Of Bace Bound To Sch734723
pdb|2QP8|B Chain B, Structure Of Bace Bound To Sch734723
pdb|2QMG|A Chain A, Structure Of Bace Bound To Sch745966
pdb|2QMG|B Chain B, Structure Of Bace Bound To Sch745966
Length = 395
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 22/243 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 23 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 77
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 78 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 137
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 246
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 138 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 196
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 303
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 197 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 256
Query: 304 IGA 306
I A
Sbjct: 257 IKA 259
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 5
pdb|2OHK|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
1- Amino-Isoquinoline
pdb|2OHL|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
2- Aminoquinoline
pdb|2OHM|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
N~3~-Benzylpyridine-2,3-Diamine
pdb|2OHN|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
4- (4-Fluorobenzyl)piperidine
pdb|2OHQ|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 4
pdb|2OHR|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6a
pdb|2OHS|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6b
pdb|2OHT|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 7
pdb|2OHU|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8b
pdb|2OHP|A Chain A, X-ray Crystal Structure Of Beta Secretase Complexed With
Compound 3
Length = 402
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 22/243 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 31 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 85
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 86 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 145
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 246
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 146 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 204
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 303
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 205 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 264
Query: 304 IGA 306
I A
Sbjct: 265 IKA 267
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|B Chain B, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|C Chain C, Potent Beta-Secretase 1 Inhibitor
pdb|3KYR|A Chain A, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|B Chain B, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|C Chain C, Bace-1 In Complex With A Norstatine Type Inhibitor
Length = 405
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 22/243 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 89 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 246
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 149 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 303
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 267
Query: 304 IGA 306
I A
Sbjct: 268 IKA 270
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572
pdb|3KMX|B Chain B, Structure Of Bace Bound To Sch346572
pdb|3KMY|A Chain A, Structure Of Bace Bound To Sch12472
pdb|3KMY|B Chain B, Structure Of Bace Bound To Sch12472
pdb|3KN0|A Chain A, Structure Of Bace Bound To Sch708236
pdb|3KN0|B Chain B, Structure Of Bace Bound To Sch708236
pdb|3LNK|A Chain A, Structure Of Bace Bound To Sch743813
pdb|3LNK|B Chain B, Structure Of Bace Bound To Sch743813
pdb|4FRS|A Chain A, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
pdb|4FRS|B Chain B, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
Length = 395
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 22/243 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 23 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 77
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 78 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 137
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 246
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 138 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 196
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 303
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 197 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 256
Query: 304 IGA 306
I A
Sbjct: 257 IKA 259
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|B Chain B, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|C Chain C, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3I25|A Chain A, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|B Chain B, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|C Chain C, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
Length = 406
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 22/243 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 35 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 89
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 90 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 149
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 246
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 150 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 208
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 303
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 209 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 268
Query: 304 IGA 306
I A
Sbjct: 269 IKA 271
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQR|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|C Chain C, Crystal Structure Of Bace1 With Its Inhibitor
Length = 433
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 22/243 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 54 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 108
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 109 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 168
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 246
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 169 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 227
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 303
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 228 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 287
Query: 304 IGA 306
I A
Sbjct: 288 IKA 290
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor
Length = 413
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 22/243 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G +G D V I G + +T+ ++GILGL + +IA
Sbjct: 89 VPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 246
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 149 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 303
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 267
Query: 304 IGA 306
I A
Sbjct: 268 IKA 270
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|3K5D|A Chain A, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|B Chain B, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|C Chain C, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3MSK|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3MSL|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3S2O|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|4D85|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bvi151
Length = 408
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 22/243 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 84
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 85 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 144
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 246
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 145 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 203
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 303
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 204 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 263
Query: 304 IGA 306
I A
Sbjct: 264 IKA 266
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Ixs
Length = 411
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 22/243 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 40 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 94
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G +G D V I G + +T+ ++GILGL + +IA
Sbjct: 95 VPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 154
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 246
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 155 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 213
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 303
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 214 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 273
Query: 304 IGA 306
I A
Sbjct: 274 IKA 276
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|B Chain B, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|C Chain C, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
Length = 405
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 22/243 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 89 VPYCQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 246
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 149 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 303
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 267
Query: 304 IGA 306
I A
Sbjct: 268 IKA 270
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8L|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8V|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
L- L000430,469
pdb|2IRZ|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2IS0|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2PH6|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2OAH|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2P8H|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2NTR|A Chain A, Crystal Structure Of Human Bace-1 Bound To Inhibitor
pdb|2PH8|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2QZK|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
I21
pdb|2ZJM|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(4-Sulfamoyl-Phenoxy)-Acetamide
pdb|3FKT|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Spiropiperdine Iminohydantoin Inhibitor
Length = 405
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 22/243 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G +G D V I G + +T+ ++GILGL + +IA
Sbjct: 89 VPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 246
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 149 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 303
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 267
Query: 304 IGA 306
I A
Sbjct: 268 IKA 270
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1
Inhibitors: Prime Side Chromane-Containing Inhibitors
Length = 408
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 22/243 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 84
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G +G D V I G + +T+ ++GILGL + +IA
Sbjct: 85 VPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 144
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 246
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 145 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 203
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 303
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 204 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 263
Query: 304 IGA 306
I A
Sbjct: 264 IKA 266
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1
pdb|3TPL|A Chain A, Apo Structure Of Bace1
pdb|3TPL|B Chain B, Apo Structure Of Bace1
pdb|3TPL|C Chain C, Apo Structure Of Bace1
pdb|3TPP|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQP|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQU|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQW|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQX|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DV9|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4FGX|A Chain A, Crystal Structure Of Bace1 With Novel Inhibitor
Length = 433
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 22/243 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 54 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 108
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G +G D V I G + +T+ ++GILGL + +IA
Sbjct: 109 VPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 168
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 246
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 169 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 227
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 303
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 228 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 287
Query: 304 IGA 306
I A
Sbjct: 288 IKA 290
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8c
pdb|2VA6|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 24
pdb|2VA7|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 27
Length = 455
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 22/243 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 77 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 131
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 132 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 191
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 246
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 192 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 250
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 303
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 251 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 310
Query: 304 IGA 306
I A
Sbjct: 311 IKA 313
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|B Chain B, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|C Chain C, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2P83|A Chain A, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|B Chain B, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|C Chain C, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
Length = 455
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 22/243 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 77 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 131
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 132 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 191
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 246
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 192 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 250
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 303
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 251 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 310
Query: 304 IGA 306
I A
Sbjct: 311 IKA 313
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132
pdb|3LPI|B Chain B, Structure Of Bace Bound To Sch745132
pdb|3LPJ|A Chain A, Structure Of Bace Bound To Sch743641
pdb|3LPJ|B Chain B, Structure Of Bace Bound To Sch743641
pdb|3LPK|A Chain A, Structure Of Bace Bound To Sch747123
pdb|3LPK|B Chain B, Structure Of Bace Bound To Sch747123
pdb|3OHF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHH|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3OHH|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3R2F|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3SKF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKG|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|4FSE|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
Length = 455
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 22/243 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 76 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 130
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 131 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 190
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 246
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 191 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 249
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 303
Y PI + Y+++ + + I C++ +I+DSGT+ L P V +
Sbjct: 250 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 309
Query: 304 IGA 306
I A
Sbjct: 310 IKA 312
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
Candida Tropicalis Yeast
Length = 334
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 114/241 (47%), Gaps = 28/241 (11%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWV--PSSKCLFSIS------CYLHSRYRARLSRTY 131
Y +I +GS Q +VV DTGSS+LWV ++C + S C + S +
Sbjct: 14 YAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSSA 73
Query: 132 TKI-VPCKIHYGSGQIS-GFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGL 189
+ I YG S G F +D V G + IK+Q+F +VT + GI+G+
Sbjct: 74 QNLNQDFSIEYGDLTSSQGSFYKDTVGFGGISIKNQQFADVTTTSVDQ-------GIMGI 126
Query: 190 GFRDIAAG----NATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRG 245
GF AG + P+ + +QG I++ +SL+LN + S G+IIFGG D + G
Sbjct: 127 GFTADEAGYNLYDNVPV--TLKKQGIINKNAYSLYLNSEDAST--GKIIFGGVDNAKYTG 182
Query: 246 SHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIG 305
+ +P+T ++ +G I + +S D +LDSGT++ + + +G
Sbjct: 183 TLTALPVTSSVELRVHLGSINFDGTSVSTNAD---VVLDSGTTITYFSQSTADKFARIVG 239
Query: 306 A 306
A
Sbjct: 240 A 240
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid (2-Mercapto-Ethyl)- Amide
Length = 405
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 116/243 (47%), Gaps = 22/243 (9%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G +G D V I G + +T+ ++GILGL + +IA
Sbjct: 89 VPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLW-------LNQ-DPNSEVGGEIIFGGFDWRHFRGS 246
+ + P + ++V+Q H+ +FSL LNQ + + VGG +I GG D + GS
Sbjct: 149 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHA 303
Y PI + Y+++ + + I C++ +I+DSG + L P V +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGCTNLRLPKKVFEAAVKS 267
Query: 304 IGA 306
I A
Sbjct: 268 IKA 270
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 114/264 (43%), Gaps = 37/264 (14%)
Query: 79 QYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKI-VPC 137
+Y + IG+P Q F ++FDTGSS+ WVP C S C + S T+ +
Sbjct: 19 EYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKRFFDPSSSSTFKETDYNL 78
Query: 138 KIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEV------TKEGLLPFLALQFDGILGLGF 191
I YG+G +G + +D++ +G +K Q V T E P L DGI G +
Sbjct: 79 NITYGTGGANGIYFRDSITVGGATVKQQTLAYVDNVSGPTAE-QSPDSELFLDGIFGAAY 137
Query: 192 RDIAAGNA------TPLWYNMVRQGHISQKIFSLWLNQDP-----------NSEVGGEII 234
D A A + N+ +QG IS +FS+++N + N+ +GG+I
Sbjct: 138 PDNTAMEAEYGDTYNTVHVNLYKQGLISSPVFSVYMNTNDGGGQVVFGGVNNTLLGGDIQ 197
Query: 235 FGGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAI-LDSGTSVLAGP 293
+ D RG + +W V + I+ S DG A +D+GT+ P
Sbjct: 198 YT--DVLKSRGGYF--------FWDAPVTGVKIDGSDA-VSFDGAQAFTIDTGTNFFIAP 246
Query: 294 TTVVAQINHAIGAEGIVSMQCKTV 317
++ ++ A + S Q TV
Sbjct: 247 SSFAEKVVKAALPDATESQQGYTV 270
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 468 VPPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEAA 503
V P G +++G++FLR + V+DFG +IGFA A
Sbjct: 320 VLPDGGNQFIVGNLFLRFFVNVYDFGKNRIGFAPLA 355
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex
Lacteus
Length = 340
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 101/241 (41%), Gaps = 32/241 (13%)
Query: 79 QYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVPCK 138
Y +G+GSP ++S++ DTGSSN W+ + K S S T K+
Sbjct: 13 DYVVNVGVGSPATTYSLLVDTGSSNTWLGADKSYVKTSTS---------SATSDKV---S 60
Query: 139 IHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGN 198
+ YGSG SG D V +G + I Q +++ + DGILG+G D+ G
Sbjct: 61 VTYGSGSFSGTEYTDTVTLGSLTIPKQSIGVASRDSGFDGV----DGILGVGPVDLTVGT 116
Query: 199 ATP--------LWYNMVRQGHISQKIFSLWLN-QDPNSEVGGEIIFGGFDWRHFRGSHIY 249
+P + N+ QG I + ++ S GE+ FG D + GS Y
Sbjct: 117 LSPHTSTSIPTVTDNLFSQGTIPTNLLAVSFEPTTSESSTNGELTFGATDSSKYTGSITY 176
Query: 250 VPITE----KGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIG 305
PIT YW I + SST I+D+GT++ + A+ A G
Sbjct: 177 TPITSTSPASAYWGIN--QSIRYGSSTSILSS-TAGIVDTGTTLTLIASDAFAKYKKATG 233
Query: 306 A 306
A
Sbjct: 234 A 234
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 9/110 (8%)
Query: 397 KEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIE---- 452
+A KY V N G + A++ + FTIG ++F L+ I+
Sbjct: 222 SDAFAKYKKATGAVADNNTGLLRLTTAQYANLQSLFFTIGGQTFELTANAQIWPRNLNTA 281
Query: 453 ---EGHSTICISGFIALDVPPPQGPLWVLGDMFLRAYHTVFDFGNLQIGF 499
S I G + D +G ++ G FL +++V+D N ++G
Sbjct: 282 IGGSASSVYLIVGDLGSD--SGEGLDFINGLTFLERFYSVYDTTNKRLGL 329
>pdb|3LIZ|A Chain A, Crystal Structure Of Bla G 2 Complexed With Fab 4c3
Length = 334
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 112/239 (46%), Gaps = 20/239 (8%)
Query: 75 YLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKI 134
+++ QY G IG+ Q+F VFD+ S N+ V S +C+ + + +L Y
Sbjct: 16 FINTQYAGITKIGN--QNFLTVFDSTSCNVVVASQECVGGACVCPNLQKYEKLKPKYISD 73
Query: 135 VPCKIHY-GSGQISGFFSQDNVKIGDMIIKDQEFV---EVTKEGLLPFLALQFDGILGLG 190
++ + +G G +D++ I + Q+ V E+++E + L D ++G+
Sbjct: 74 GNVQVKFFDTGSAVGRGIEDSLTISQLTTSQQDIVLADELSQEVCI----LSADVVVGIA 129
Query: 191 FRDIAAGNATPLWYNMVRQGHISQK----IFSLWLNQDPNSEVGGEIIFGGFDWRHFRGS 246
A G L V + + + +FS+ + + E GEIIFGG DW++ G
Sbjct: 130 ----APGCPNALKGKTVLENFVEENLIAPVFSIHHARFQDGEHFGEIIFGGSDWKYVDGE 185
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIG 305
YVP+ W+ ++ + I +++ G AI+D+ +++ GP V IN AIG
Sbjct: 186 FTYVPLVGDDSWKFRLDGVKIGDTTVA--PAGTQAIIDTSKAIIVGPKAYVNPINEAIG 242
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 420 INCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPLWVLG 479
++C I S+P V+F I R+F +S + YI + + +C SGF P + +G
Sbjct: 256 LDCSKIPSLPDVTFVINGRNFNISSQYYI----QQNGNLCYSGF----QPCGHSDHFFIG 307
Query: 480 DMFLRAYHTVFDFGNLQIGFAEA 502
D F+ Y++ F++ N +GF +
Sbjct: 308 DFFVDHYYSEFNWENKTMGFGRS 330
>pdb|1YG9|A Chain A, The Structure Of Mutant (N93q) Of Bla G 2
pdb|2NR6|A Chain A, Crystal Structure Of The Complex Of Antibody And The
Allergen Bla G 2
pdb|2NR6|B Chain B, Crystal Structure Of The Complex Of Antibody And The
Allergen Bla G 2
Length = 330
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 112/239 (46%), Gaps = 20/239 (8%)
Query: 75 YLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKI 134
+++ QY G IG+ Q+F VFD+ S N+ V S +C+ + + +L Y
Sbjct: 14 FINTQYAGITKIGN--QNFLTVFDSTSCNVVVASQECVGGACVCPNLQKYEKLKPKYISD 71
Query: 135 VPCKIHY-GSGQISGFFSQDNVKIGDMIIKDQEFV---EVTKEGLLPFLALQFDGILGLG 190
++ + +G G +D++ I + Q+ V E+++E + L D ++G+
Sbjct: 72 GNVQVKFFDTGSAVGRGIEDSLTISQLTTSQQDIVLADELSQEVCI----LSADVVVGIA 127
Query: 191 FRDIAAGNATPLWYNMVRQGHISQK----IFSLWLNQDPNSEVGGEIIFGGFDWRHFRGS 246
A G L V + + + +FS+ + + E GEIIFGG DW++ G
Sbjct: 128 ----APGCPNALKGKTVLENFVEENLIAPVFSIHHARFQDGEHFGEIIFGGSDWKYVDGE 183
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIG 305
YVP+ W+ ++ + I +++ G AI+D+ +++ GP V IN AIG
Sbjct: 184 FTYVPLVGDDSWKFRLDGVKIGDTTVA--PAGTQAIIDTSKAIIVGPKAYVNPINEAIG 240
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 420 INCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPLWVLG 479
++C I S+P V+F I R+F +S + YI + + +C SGF P + +G
Sbjct: 254 LDCSKIPSLPDVTFVINGRNFNISSQYYI----QQNGNLCYSGF----QPXGHSDHFFIG 305
Query: 480 DMFLRAYHTVFDFGNLQIGFAEA 502
D F+ Y++ F++ N +GF +
Sbjct: 306 DFFVDHYYSEFNWENKTMGFGRS 328
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 117/247 (47%), Gaps = 25/247 (10%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTY-TKIVPCK 138
YY E+ IG+PPQ ++ DTGSSN V + Y+ + + S TY +K
Sbjct: 15 YYLEMLIGTPPQKLQILVDTGSSNFAVAGTP-----HSYIDTYFDTERSSTYRSKGFDVT 69
Query: 139 IHYGSGQISGFFSQDNVKI-----GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRD 193
+ Y G +GF +D V I ++ E ++ LP ++++GILGL +
Sbjct: 70 VKYTQGSWTGFVGEDLVTIPKGFNTSFLVNIATIFE-SENFFLP--GIKWNGILGLAYAT 126
Query: 194 IAAGNAT--PLWYNMVRQGHISQKIFSLW-----LNQDPNSEVGGEIIFGGFDWRHFRGS 246
+A +++ + ++V Q +I +FS+ L + GG ++ GG + ++G
Sbjct: 127 LAKPSSSLETFFDSLVTQANIP-NVFSMQMCGAGLPVAGSGTNGGSLVLGGIEPSLYKGD 185
Query: 247 HIYVPITEKGYWQIKVGDILIENSSTGF-CED--GCTAILDSGTSVLAGPTTVVAQINHA 303
Y PI E+ Y+QI++ + I S C + AI+DSGT++L P V + A
Sbjct: 186 IWYTPIKEEWYYQIEILKLEIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKVFDAVVEA 245
Query: 304 IGAEGIV 310
+ ++
Sbjct: 246 VARASLI 252
>pdb|3OAD|B Chain B, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|D Chain D, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|B Chain B, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|D Chain D, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|B Chain B, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|D Chain D, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 176
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 49/83 (59%)
Query: 420 INCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPLWVLG 479
+ C++ ++P +SF +G + + L+ Y+F+ +C A+D+PPP GP W LG
Sbjct: 87 VKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALG 146
Query: 480 DMFLRAYHTVFDFGNLQIGFAEA 502
F+R ++T FD N +IGFA A
Sbjct: 147 ATFIRKFYTEFDRRNNRIGFALA 169
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Query: 229 VGGEIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTS 288
+GG+I+ GG D +H+ G+ Y+ + + G WQI++ + + SST CEDGC A++D+G S
Sbjct: 2 LGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSV-GSSTLLCEDGCLALVDTGAS 60
Query: 289 VLAGPTTVVAQINHAIGAE 307
++G T+ + ++ A+GA+
Sbjct: 61 YISGSTSSIEKLMEALGAK 79
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 375
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 110/235 (46%), Gaps = 20/235 (8%)
Query: 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP-CK 138
YY E+ +GSPPQ+ +++ DTGSSN V ++ F LH Y+ +LS TY +
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 74
Query: 139 IHYGSGQISGFFSQDNVKI--GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA 196
+ Y G+ G D V I G + +T+ ++GILGL + +IA
Sbjct: 75 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 134
Query: 197 GNAT--PLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIYVPITE 254
+ + P + ++V+Q H+ +FSL L + +GG D + GS Y PI
Sbjct: 135 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGGGSMIIGGI------DHSLYTGSLWYTPIRR 187
Query: 255 KGYWQIKVGDILIENSSTGF-CEDGC--TAILDSGTSVLAGPTTVVAQINHAIGA 306
+ Y+++ + + I C++ +I+DSGT+ L P V +I A
Sbjct: 188 EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKA 242
>pdb|1PPL|E Chain E, Crystallographic Analysis Of Transition-State Mimics Bound
To Penicillopepsin: Phosphorus-Containing Peptide
Analogues
pdb|1PPM|E Chain E, Crystallographic Analysis Of Transition-state Mimics Bound
To Penicillopepsin: Phosphorus-containing Peptide
Analogues
pdb|1APT|E Chain E, Crystallographic Analysis Of A Pepstatin Analogue Binding
To The Aspartyl Proteinase Penicillopepsin At 1.8
Angstroms Resolution
pdb|1APU|E Chain E, Crystallographic Analysis Of A Pepstatin Analogue Binding
To The Aspartyl Proteinase Penicillopepsin At 1.8
Angstroms Resolution
pdb|1APV|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Difluorostatine-And
Difluorostatone-Containing Peptides
pdb|1APW|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Difluorostatine-And
Difluorostatone-Containing Peptides
pdb|1PPK|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Phosphorous-Containing Peptide
Analogues
pdb|1BXO|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor: Methyl
Cyclo[(2s)-2-[[(1r)-1-(N-(L-N-(3-
Methylbutanoyl)valyl-L-Aspartyl)amino)-3-Methylbut Yl]
Hydroxyphosphinyloxy]-3-(3-Aminomethyl) Phenylpropanoate
pdb|1BXQ|A Chain A, Acid Proteinase (Penicillopepsin) Complex With Phosphonate
Inhibitor.
pdb|2WEA|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor:
Methyl[cyclo-7[(2r)-((N-Valyl)
Amino)-2-(Hydroxyl-(1s)-1-Methyoxycarbonyl-2-
Phenylethoxy)
Phosphinyloxy-Ethyl]-1-Naphthaleneacetamide], Sodium
Salt
pdb|2WEB|A Chain A, Acid Proteinase (penicillopepsin) (e.c.3.4.23.20) Complex
With Phosphonate Inhibitor:
Methyl(2s)-[1-(((n-formyl)-l-
Valyl)amino-2-(2-naphthyl)ethyl)hydroxyphosphinyloxy]-3-
Phenylpropanoate, Sodium Salt
pdb|2WEC|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor: Methyl(2s)-[1-(((N-(1-
Naphthaleneacetyl))-L-Valyl)aminomethyl)hydroxy
Phosphinyloxy]-3-Phenylpropanoate, Sodium Salt
pdb|2WED|A Chain A, Acid Proteinase (penicillopepsin) (e.c.3.4.23.20) Complex
With Phosphonate Macrocyclic
Inhibitor:methyl[cyclo-7[(2r)-
((n-valyl)amino)-2-(hydroxyl-(1s)-1-methyoxycarbonyl-2-
Phenylethoxy)phosphinyloxy-ethyl]-1-
naphthaleneacetamide], Sodium Salt
pdb|3APP|A Chain A, Structure And Refinement Of Penicillopepsin At 1.8
Angstroms Resolution
Length = 323
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 107/234 (45%), Gaps = 30/234 (12%)
Query: 77 DAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP 136
D +Y + IG + ++ FDTGS++LWV S++ S HS Y +
Sbjct: 14 DEEYITPVTIGG--TTLNLNFDTGSADLWVFSTELPASQQS-GHSVYNPSATGKELSGYT 70
Query: 137 CKIHYGSG-QISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQF------DGILGL 189
I YG G SG D+V +G + Q V+ ++ ++ QF DG+LGL
Sbjct: 71 WSISYGDGSSASGNVFTDSVTVGGVTAHGQA-VQAAQQ-----ISAQFQQDTNNDGLLGL 124
Query: 190 GFRDIAA--GNATPLWYNMVRQGHISQKIFSLWL-NQDPNSEVGGEIIFGGFDWRHFRGS 246
F I + +++ V+ ++Q +F++ L +Q P G FG D + GS
Sbjct: 125 AFSSINTVQPQSQTTFFDTVKS-SLAQPLFAVALKHQQP-----GVYDFGFIDSSKYTGS 178
Query: 247 HIYVPI-TEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQ 299
Y + +G+W V D S +G DG + I D+GT++L +VV+Q
Sbjct: 179 LTYTGVDNSQGFWSFNV-DSYTAGSQSG---DGFSGIADTGTTLLLLDDSVVSQ 228
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 477 VLGDMFLRAYHTVFDFGNLQIGFAEAA 503
+ GD+FL++ + VFD Q+GFA A
Sbjct: 297 IFGDIFLKSQYVVFDSDGPQLGFAPQA 323
>pdb|1GKT|A Chain A, Neutron Laue Diffraction Structure Of Endothiapepsin
Complexed With Transition State Analogue Inhibitor H261
Length = 329
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 107/239 (44%), Gaps = 17/239 (7%)
Query: 74 NYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFS-ISCYLHSRYRARLSRTYT 132
+ LD Y + IG+P Q+ ++ FDTGSS+LWV SS+ S + +++ ++ ++ +
Sbjct: 11 DSLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVXQTIYTPSKSTTAKLLS 70
Query: 133 KIVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLA-LQFDGILGLGF 191
+ SG D V +G + + Q VE K+ F DG+LGL F
Sbjct: 71 GATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQA-VESAKKVSSSFTEDSTIDGLLGLAF 129
Query: 192 RDIAAGNAT--PLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIY 249
+ + T +++ + + +F+ D G FG D + GS Y
Sbjct: 130 STLNTVSPTQQKTFFDNAKA-SLDSPVFT----ADLGYHAPGTYNFGFIDTTAYTGSITY 184
Query: 250 VPI-TEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVV----AQINHA 303
+ T++G+W+ + + + F I D+GT++L P TVV AQ++ A
Sbjct: 185 TAVSTKQGFWEWTSTGYAVGSGT--FKSTSIDGIADTGTTLLYLPATVVSAYWAQVSGA 241
>pdb|1GVT|A Chain A, Endothiapepsin Complex With Cp-80,794
pdb|1GVU|A Chain A, Endothiapepsin Complex With H189
pdb|1GVV|A Chain A, Five Atomic Resolution Structures Of Endothiapepsin
Inhibitor Complexes; Implications For The Aspartic
Proteinase Mechanism
pdb|1GVW|A Chain A, Endothiapepsin Complex With Pd-130,328
pdb|1GVX|A Chain A, Endothiapepsin Complexed With H256
pdb|1OEX|A Chain A, Atomic Resolution Structure Of Endothiapepsin In Complex
With A Hydroxyethylene Transition State Analogue
Inhibitor H261
pdb|2JJI|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2JJJ|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2VS2|A Chain A, Neutron Diffraction Structure Of Endothiapepsin In Complex
With A Gem- Diol Inhibitor.
pdb|3URJ|A Chain A, Type Iv Native Endothiapepsin
pdb|3URI|A Chain A, Endothiapepsin-Db5 Complex.
pdb|3URL|A Chain A, Endothiapepsin-Db6 Complex.
pdb|1OEW|A Chain A, Atomic Resolution Structure Of Native Endothiapepsin
Length = 329
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 107/239 (44%), Gaps = 17/239 (7%)
Query: 74 NYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFS-ISCYLHSRYRARLSRTYT 132
+ LD Y + IG+P Q+ ++ FDTGSS+LWV SS+ S + +++ ++ ++ +
Sbjct: 11 DSLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVXQTIYTPSKSTTAKLLS 70
Query: 133 KIVPCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLA-LQFDGILGLGF 191
+ SG D V +G + + Q VE K+ F DG+LGL F
Sbjct: 71 GATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQA-VESAKKVSSSFTEDSTIDGLLGLAF 129
Query: 192 RDIAAGNAT--PLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIY 249
+ + T +++ + + +F+ D G FG D + GS Y
Sbjct: 130 STLNTVSPTQQKTFFDNAKA-SLDSPVFT----ADLGYHAPGTYNFGFIDTTAYTGSITY 184
Query: 250 VPI-TEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVV----AQINHA 303
+ T++G+W+ + + + F I D+GT++L P TVV AQ++ A
Sbjct: 185 TAVSTKQGFWEWTSTGYAVGSGT--FKSTSIDGIADTGTTLLYLPATVVSAYWAQVSGA 241
>pdb|1ER8|E Chain E, The Active Site Of Aspartic Proteinases
pdb|2ER0|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes
pdb|2ER6|E Chain E, The Structure Of A Synthetic Pepsin Inhibitor Complexed
With Endothiapepsin.
pdb|2ER7|E Chain E, X-Ray Analyses Of Aspartic Proteinases.Iii.
Three-Dimensional Structure Of Endothiapepsin Complexed
With A Transition-State Isostere Inhibitor Of Renin At
1.6 Angstroms Resolution
pdb|2ER9|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes.
pdb|3ER3|E Chain E, The Active Site Of Aspartic Proteinases
pdb|3ER5|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER1|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER2|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER4|E Chain E, High-Resolution X-Ray Analyses Of Renin Inhibitor-Aspartic
Proteinase Complexes
pdb|5ER1|E Chain E, A Rational Approach To The Design Of Antihypertensives.
X-Ray Studies Of Complexes Between Aspartic Proteinases
And Aminoalcohol Renin Inhibitors
pdb|5ER2|E Chain E, High-Resolution X-Ray Diffraction Study Of The Complex
Between Endothiapepsin And An Oligopeptide Inhibitor.
The Analysis Of The Inhibitor Binding And Description Of
The Rigid Body Shift In The Enzyme
pdb|1EED|P Chain P, X-Ray Crystallographic Analysis Of Inhibition Of
Endothiapepsin By Cyclohexyl Renin Inhibitors
pdb|1ENT|E Chain E, X-Ray Analyses Of Aspartic Proteinases. The
Three-Dimensional Structure At 2.1 Angstroms Resolution
Of Endothiapepsin
pdb|1EPL|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPM|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPN|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPO|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Cp-81,282 (Mor Phe Nle Chf Nme)
pdb|1EPP|E Chain E, Endothia Aspartic Proteinase (endothiapepsin) Complexed
With Pd-130, 693 (mas Phe Lys+mtf Sta Mba)
pdb|1EPQ|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-133, 450 (Sot Phe Gly+scc Gcl)
pdb|1E5O|E Chain E, Endothiapepsin Complex With Inhibitor Db2
pdb|1E81|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd61395
pdb|1E82|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd59601
pdb|1E80|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd56133
pdb|1OD1|A Chain A, Endothiapepsin Pd135,040 Complex
pdb|4APE|A Chain A, The Active Site Of Aspartic Proteinases
pdb|2V00|A Chain A, X-Ray Crystal Structure Of Endothiapepsin Complexed With
Compound 1
pdb|3LZY|A Chain A, Crystal Structure Of Endothiapesin In Complex With Xenon
pdb|3PB5|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBZ|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCW|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCZ|A Chain A, Endothiapepsin In Complex With Benzamidine
pdb|3PGI|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PRS|A Chain A, Endothiapepsin In Complex With Ritonavir
pdb|3PI0|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLL|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PM4|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMU|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMY|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PSY|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3PWW|A Chain A, Endothiapepsin In Complex With Saquinavir
pdb|3Q6Y|A Chain A, Endothiapepsin In Complex With A Pyrrolidine Based
Inhibitor
pdb|3T6I|A Chain A, Endothiapepsin In Complex With An Azepin Derivative
pdb|3T7P|A Chain A, Endothiapepsin In Complex With A Hydrazide Derivative
pdb|3T7Q|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3T7X|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
Length = 330
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 105/247 (42%), Gaps = 32/247 (12%)
Query: 74 NYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTK 133
+ LD Y + IG+P Q+ ++ FDTGSS+LWV SS+ S + T +K
Sbjct: 11 DSLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSET-------TASEVDGQTIYTPSK 63
Query: 134 IVPCKIHYGS---------GQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLA-LQF 183
K+ G+ SG D V +G + + Q VE K+ F
Sbjct: 64 STTAKLLSGATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQA-VESAKKVSSSFTEDSTI 122
Query: 184 DGILGLGFRDIAAGNAT--PLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWR 241
DG+LGL F + + T +++ + + +F+ D G FG D
Sbjct: 123 DGLLGLAFSTLNTVSPTQQKTFFDNAKA-SLDSPVFT----ADLGYHAPGTYNFGFIDTT 177
Query: 242 HFRGSHIYVPI-TEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVV--- 297
+ GS Y + T++G+W+ + + + F I D+GT++L P TVV
Sbjct: 178 AYTGSITYTAVSTKQGFWEWTSTGYAVGSGT--FKSTSIDGIADTGTTLLYLPATVVSAY 235
Query: 298 -AQINHA 303
AQ++ A
Sbjct: 236 WAQVSGA 242
>pdb|1EPR|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-135, 040
Length = 330
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 105/247 (42%), Gaps = 32/247 (12%)
Query: 74 NYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTK 133
+ LD Y + IG+P Q+ ++ FDTGSS+LWV SS+ S + T +K
Sbjct: 11 DSLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSET-------TASEVDGQTIYTPSK 63
Query: 134 IVPCKIHYGS---------GQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLA-LQF 183
K+ G+ SG D V +G + + Q VE K+ F
Sbjct: 64 STTAKLLSGATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQA-VESAKKVSSSFTEDSTI 122
Query: 184 DGILGLGFRDIAAGNAT--PLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWR 241
DG+LGL F + + T +++ + + +F+ D G FG D
Sbjct: 123 DGLLGLAFSTLNTVSPTQXKTFFDNAKA-SLDSPVFT----ADLGYHAPGTYNFGFIDTT 177
Query: 242 HFRGSHIYVPI-TEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVV--- 297
+ GS Y + T++G+W+ + + + F I D+GT++L P TVV
Sbjct: 178 AYTGSITYTAVSTKQGFWEWTSTGYAVGSGT--FKSTSIDGIADTGTTLLYLPATVVSAY 235
Query: 298 -AQINHA 303
AQ++ A
Sbjct: 236 WAQVSGA 242
>pdb|1IZD|A Chain A, Crystal Structure Of Aspergillus Oryzae Aspartic
Proteinase
pdb|1IZE|A Chain A, Crystal Structure Of Aspergillus Oryzae Aspartic
Proteinase Complexed With Pepstatin
Length = 323
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 95/230 (41%), Gaps = 39/230 (16%)
Query: 77 DAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP 136
D +Y ++ +G + + FDTGS++LWV SS+ S H Y S
Sbjct: 14 DEEYITQVTVGD--DTLGLDFDTGSADLWVFSSQTPSSERS-GHDYYTPGSSAQKIDGAT 70
Query: 137 CKIHYGSG-QISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLA-LQFDGILGLGFRDI 194
I YG G SG +D V +G + D + VE ++ F DG+LGL F I
Sbjct: 71 WSISYGDGSSASGDVYKDKVTVG-GVSYDSQAVESAEKVSSEFTQDTANDGLLGLAFSSI 129
Query: 195 AAGNATP--LWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIYVPI 252
TP +++ V+ +S+ IF++ L + G FG D + GS Y +
Sbjct: 130 NTVQPTPQKTFFDNVKS-SLSEPIFAVALKHN----APGVYDFGYTDSSKYTGSITYTDV 184
Query: 253 -TEKGYWQIKVGDILIENSSTGFCEDG-----------CTAILDSGTSVL 290
+G+W GF DG T I D+GT++L
Sbjct: 185 DNSQGFW--------------GFTADGYSIGSDSSSDSITGIADTGTTLL 220
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 426 ASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPLWVLGDMFLRA 485
AS+P S TIG+ + + P +YI + G+ F + G + GD+FL++
Sbjct: 252 ASLPDFSVTIGDYTATV-PGEYISFADVGNGQT----FGGIQSNSGIG-FSIFGDVFLKS 305
Query: 486 YHTVFDFGNLQIGFAEAA 503
+ VFD ++GFA A
Sbjct: 306 QYVVFDASGPRLGFAAQA 323
>pdb|1IBQ|A Chain A, Aspergillopepsin From Aspergillus Phoenicis
pdb|1IBQ|B Chain B, Aspergillopepsin From Aspergillus Phoenicis
Length = 325
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 75/186 (40%), Gaps = 12/186 (6%)
Query: 77 DAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVP 136
D +Y + +G + + FDTGS++LWV S + L S H Y S T
Sbjct: 13 DEEYLTPVTVGK--STLHLDFDTGSADLWVFSDE-LPSSEQTGHDLYTPSSSATKLSGYS 69
Query: 137 CKIHYGSG-QISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDI- 194
I YG G SG +D V +G + Q +K DG+LGL F I
Sbjct: 70 WDISYGDGSSASGDVYRDTVTVGGVTTNKQAVEAASKISSEFVQDTANDGLLGLAFSSIN 129
Query: 195 -AAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIYVPI- 252
A +++ V+ + +F++ L D G FG D + GS Y
Sbjct: 130 TVQPKAQTTFFDTVKS-QLDSPLFAVQLKHD----APGVYDFGYIDDSKYTGSITYTDAD 184
Query: 253 TEKGYW 258
+ +GYW
Sbjct: 185 SSQGYW 190
>pdb|3C9X|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase
pdb|3EMY|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase Complexed With Pepstatin A
Length = 329
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 91/233 (39%), Gaps = 25/233 (10%)
Query: 63 NHPKADVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSR 122
NHP ++ D++Y + IG+P Q + FDTGSS+LWV SS+ S S H+
Sbjct: 7 NHP-------SDSADSEYITSVSIGTPAQVLPLDFDTGSSDLWVFSSETPKS-SATGHAI 58
Query: 123 YRARLSRTYTKIVPCK---IHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFL 179
Y S T K+ + SG D V IG + Q T+
Sbjct: 59 YTPSKSSTSKKVSGASWSISYGDGSSSSGDVYTDKVTIGGFSVNTQGVESATRVSTEFVQ 118
Query: 180 ALQFDGILGLGFRDIAAGNATP--LWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGG 237
G++GL F P W++ +++ +F+ L N G FG
Sbjct: 119 DTVISGLVGLAFDSGNQVRPHPQKTWFSNAAS-SLAEPLFTADLRHGQN----GSYNFGY 173
Query: 238 FDWRHFRGSHIYVPI-TEKGYWQIKV------GDILIENSSTGFCEDGCTAIL 283
D +G Y P+ +G+W+ G L NS G + G T +L
Sbjct: 174 IDTSVAKGPVAYTPVDNSQGFWEFTASGYSVGGGKLNRNSIDGIADTGTTLLL 226
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 18/87 (20%)
Query: 421 NCDDIASMPYVSFTIGNRSFPLSPEQY-IFKIEEGHSTICISGF-----IALDVPPPQGP 474
+CD+ +P SF +G+ + + + + +EEG ST C G I +++
Sbjct: 254 DCDE--DLPSFSFGVGSSTITIPGDLLNLTPLEEGSST-CFGGLQSSSGIGINI------ 304
Query: 475 LWVLGDMFLRAYHTVFDFGNLQIGFAE 501
GD+ L+A VFD GN ++G+A+
Sbjct: 305 ---FGDVALKAALVVFDLGNERLGWAQ 328
>pdb|1M12|A Chain A, Nmr Solution Structure Of Human Saposin C
pdb|1SN6|A Chain A, Nmr Solution Structure Of Human Saposin C In Sds Micelles
Length = 84
Score = 35.4 bits (80), Expect = 0.081, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 310 VSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLC 345
+S +C+ VV YG+ I L+ V PE VCS + LC
Sbjct: 43 LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLC 78
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 377 CAFCEMIVFWIQMQLKQQKTKEAIFKYADKLCEVLPNPMGK 417
C CE +V + + KT++ I DK+C LP + +
Sbjct: 5 CEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSE 45
>pdb|2Z9A|A Chain A, Crystal Structure Of Human Saposin C Dimer In Open
Conformation
pdb|2Z9A|B Chain B, Crystal Structure Of Human Saposin C Dimer In Open
Conformation
Length = 88
Score = 35.4 bits (80), Expect = 0.081, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 310 VSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLC 345
+S +C+ VV YG+ I L+ V PE VCS + LC
Sbjct: 45 LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLC 80
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 377 CAFCEMIVFWIQMQLKQQKTKEAIFKYADKLCEVLPNPMGK 417
C CE +V + + KT++ I DK+C LP + +
Sbjct: 7 CEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSE 47
>pdb|2QYP|A Chain A, Orthorhombic Crystal Structure Of Human Saposin C Dimer In
Open Conformation
pdb|2QYP|B Chain B, Orthorhombic Crystal Structure Of Human Saposin C Dimer In
Open Conformation
Length = 91
Score = 35.4 bits (80), Expect = 0.081, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 310 VSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLC 345
+S +C+ VV YG+ I L+ V PE VCS + LC
Sbjct: 46 LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLC 81
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 377 CAFCEMIVFWIQMQLKQQKTKEAIFKYADKLCEVLPNPMGK 417
C CE +V + + KT++ I DK+C LP + +
Sbjct: 8 CEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSE 48
>pdb|2GTG|A Chain A, Crystal Structure Of Human Saposin C
Length = 83
Score = 35.4 bits (80), Expect = 0.081, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 310 VSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLC 345
+S +C+ VV YG+ I L+ V PE VCS + LC
Sbjct: 45 LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLC 80
Score = 30.0 bits (66), Expect = 3.2, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 371 INESTLCAFCEMIVFWIQMQLKQQKTKEAIFKYADKLCEVLPNPMGK 417
++ C CE +V + + KT++ I DK+C LP + +
Sbjct: 1 MDSDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSE 47
>pdb|2R0R|A Chain A, Crystal Structure Of Human Saposin D Variant Sapd K9e
pdb|2R0R|B Chain B, Crystal Structure Of Human Saposin D Variant Sapd K9e
Length = 85
Score = 35.0 bits (79), Expect = 0.099, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 376 LCAFCEMIVFWIQMQLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIAS 427
C CE +V ++ L++ TK+ I +K C LP+P K CD +
Sbjct: 3 FCEVCEKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDPYQK---QCDQFVA 51
Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 313 QCKTVVFEYGNMIWEFLISGVQPETVCSDIGLC 345
QC V EY ++ E L+ + P VC IG C
Sbjct: 45 QCDQFVAEYEPVLIEILVEVMDPSFVCLKIGAC 77
>pdb|2RB3|A Chain A, Crystal Structure Of Human Saposin D
pdb|2RB3|B Chain B, Crystal Structure Of Human Saposin D
pdb|2RB3|C Chain C, Crystal Structure Of Human Saposin D
pdb|2RB3|D Chain D, Crystal Structure Of Human Saposin D
Length = 85
Score = 33.5 bits (75), Expect = 0.31, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 376 LCAFCEMIVFWIQMQLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIAS 427
C C+ +V ++ L++ TK+ I +K C LP+P K CD +
Sbjct: 3 FCEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDPYQK---QCDQFVA 51
Score = 29.3 bits (64), Expect = 4.9, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 313 QCKTVVFEYGNMIWEFLISGVQPETVCSDIGLC 345
QC V EY ++ E L+ + P VC IG C
Sbjct: 45 QCDQFVAEYEPVLIEILVEVMDPSFVCLKIGAC 77
>pdb|2R1Q|A Chain A, Crystal Structure Of Iodinated Human Saposin D In Space
Group C2221
Length = 85
Score = 33.5 bits (75), Expect = 0.31, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 376 LCAFCEMIVFWIQMQLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIAS 427
C C+ +V ++ L++ TK+ I +K C LP+P K CD +
Sbjct: 3 FCEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDPYQK---QCDQFVA 51
>pdb|3BQP|A Chain A, Crystal Structure Of Human Saposin D (Orthorhombic)
pdb|3BQP|B Chain B, Crystal Structure Of Human Saposin D (Orthorhombic)
pdb|3BQQ|C Chain C, Crystal Structure Of Human Saposin D (Triclinic)
pdb|3BQQ|A Chain A, Crystal Structure Of Human Saposin D (Triclinic)
pdb|3BQQ|B Chain B, Crystal Structure Of Human Saposin D (Triclinic)
pdb|3BQQ|D Chain D, Crystal Structure Of Human Saposin D (Triclinic)
Length = 80
Score = 33.1 bits (74), Expect = 0.32, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 376 LCAFCEMIVFWIQMQLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIAS 427
C C+ +V ++ L++ TK+ I +K C LP+P K CD +
Sbjct: 4 FCEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDPYQK---QCDQFVA 52
Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 313 QCKTVVFEYGNMIWEFLISGVQPETVCSDIGLC 345
QC V EY ++ E L+ + P VC IG C
Sbjct: 46 QCDQFVAEYEPVLIEILVEVMDPSFVCLKIGAC 78
>pdb|1FUI|A Chain A, L-Fucose Isomerase From Escherichia Coli
pdb|1FUI|B Chain B, L-Fucose Isomerase From Escherichia Coli
pdb|1FUI|C Chain C, L-Fucose Isomerase From Escherichia Coli
pdb|1FUI|D Chain D, L-Fucose Isomerase From Escherichia Coli
pdb|1FUI|E Chain E, L-Fucose Isomerase From Escherichia Coli
pdb|1FUI|F Chain F, L-Fucose Isomerase From Escherichia Coli
Length = 591
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 51/141 (36%), Gaps = 39/141 (27%)
Query: 186 ILGLGFRDIAAGNAT---------PLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFG 236
++ + RD+ GN+ L YN + G Q+ W +Q PN + I+
Sbjct: 265 LMAMCIRDMMQGNSKLADIGRVEESLGYNAIAAGFQGQR---HWTDQYPNGDTAEAILNS 321
Query: 237 GFDWRHFRGSHIYVPITE-------------------------KGYWQIKVGDILIENSS 271
FDW R +V TE + YW + + + +
Sbjct: 322 SFDWNGVR--EPFVVATENDSLNGVAMLMGHQLTGTAQVFADVRTYWSPEAIERVTGHKL 379
Query: 272 TGFCEDGCTAILDSGTSVLAG 292
G E G +++SG++ L G
Sbjct: 380 DGLAEHGIIHLINSGSAALDG 400
>pdb|4DDJ|A Chain A, Crystal Structure Of Saposin A In Complex With
Lauryldimethylamine-N- Oxide (Ldao)
Length = 83
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 377 CAFCEMIVFWIQMQLKQQKTKEAIFKYADKLCEVLPNP 414
C C+ +V LK T+E I Y +K C+ LP P
Sbjct: 6 CDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKP 43
>pdb|2DOB|A Chain A, Crystal Structure Of Human Saposin A
Length = 83
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 377 CAFCEMIVFWIQMQLKQQKTKEAIFKYADKLCEVLPNP 414
C C+ +V LK T+E I Y +K C+ LP P
Sbjct: 6 CDICKDVVTAAGDXLKDNATEEEILVYLEKTCDWLPKP 43
>pdb|2L5T|A Chain A, Solution Nmr Structure Of E2 Lipoyl Domain From
Thermoplasma Acidophilum
Length = 77
Score = 28.9 bits (63), Expect = 6.8, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 142 GSGQISGFFSQDNVKIGDMIIKDQEFVEVTKE 173
G G G + +VK GDM+ KDQ+ VEV +
Sbjct: 10 GEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTD 41
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,385,613
Number of Sequences: 62578
Number of extensions: 654702
Number of successful extensions: 1896
Number of sequences better than 100.0: 128
Number of HSP's better than 100.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1389
Number of HSP's gapped (non-prelim): 241
length of query: 503
length of database: 14,973,337
effective HSP length: 103
effective length of query: 400
effective length of database: 8,527,803
effective search space: 3411121200
effective search space used: 3411121200
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)