Query 010696
Match_columns 503
No_of_seqs 307 out of 2050
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 03:31:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010696.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010696hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00165 aspartyl protease; Pr 100.0 7.4E-67 1.6E-71 548.0 42.0 358 31-503 63-447 (482)
2 cd06098 phytepsin Phytepsin, a 100.0 7.6E-64 1.7E-68 505.2 36.0 316 70-501 1-317 (317)
3 cd05490 Cathepsin_D2 Cathepsin 100.0 1.6E-63 3.5E-68 504.9 38.2 323 74-501 1-325 (325)
4 cd05486 Cathespin_E Cathepsin 100.0 5.5E-63 1.2E-67 499.0 36.3 315 80-501 1-316 (316)
5 cd05487 renin_like Renin stimu 100.0 2.2E-62 4.8E-67 496.6 39.1 324 72-502 1-326 (326)
6 cd05485 Cathepsin_D_like Cathe 100.0 1.6E-61 3.4E-66 490.7 37.9 326 70-501 2-329 (329)
7 cd05478 pepsin_A Pepsin A, asp 100.0 1.8E-61 3.9E-66 488.2 37.1 315 71-501 2-317 (317)
8 cd05488 Proteinase_A_fungi Fun 100.0 6.9E-61 1.5E-65 484.5 37.3 319 70-501 1-320 (320)
9 cd05477 gastricsin Gastricsins 100.0 1.4E-60 3E-65 482.0 38.4 316 77-502 1-318 (318)
10 PTZ00147 plasmepsin-1; Provisi 100.0 5.3E-60 1.1E-64 492.6 40.2 326 62-503 122-450 (453)
11 PTZ00013 plasmepsin 4 (PM4); P 100.0 2.4E-59 5.1E-64 486.8 40.0 326 62-503 121-449 (450)
12 PF00026 Asp: Eukaryotic aspar 100.0 4E-56 8.6E-61 448.8 31.6 315 79-502 1-317 (317)
13 cd06097 Aspergillopepsin_like 100.0 6.3E-53 1.4E-57 418.2 30.4 271 80-501 1-278 (278)
14 cd05473 beta_secretase_like Be 100.0 2.4E-51 5.3E-56 421.9 31.9 315 78-503 2-346 (364)
15 KOG1339 Aspartyl protease [Pos 100.0 1.3E-50 2.8E-55 420.6 32.2 320 67-502 34-392 (398)
16 cd06096 Plasmepsin_5 Plasmepsi 100.0 3.4E-50 7.4E-55 407.4 30.5 281 78-502 2-323 (326)
17 cd05474 SAP_like SAPs, pepsin- 100.0 2.1E-49 4.6E-54 396.2 33.4 278 79-502 2-295 (295)
18 PLN03146 aspartyl protease fam 100.0 2.2E-49 4.7E-54 413.8 33.3 303 76-502 81-426 (431)
19 cd05472 cnd41_like Chloroplast 100.0 1.6E-48 3.5E-53 390.7 29.1 287 79-502 1-297 (299)
20 cd05471 pepsin_like Pepsin-lik 100.0 1.5E-46 3.2E-51 372.7 34.1 226 80-307 1-231 (283)
21 cd05476 pepsin_A_like_plant Ch 100.0 5.2E-46 1.1E-50 366.0 27.3 248 79-503 1-264 (265)
22 cd05475 nucellin_like Nucellin 100.0 2E-45 4.3E-50 363.3 28.7 258 78-503 1-272 (273)
23 cd05489 xylanase_inhibitor_I_l 100.0 2.4E-41 5.2E-46 345.8 27.3 312 86-502 2-361 (362)
24 cd05470 pepsin_retropepsin_lik 99.9 1.5E-22 3.4E-27 171.6 13.0 107 82-189 1-109 (109)
25 PF14543 TAXi_N: Xylanase inhi 99.9 9E-21 1.9E-25 172.7 16.1 135 80-237 1-164 (164)
26 PF14541 TAXi_C: Xylanase inhi 99.7 4.2E-17 9.1E-22 148.2 14.4 153 257-501 1-161 (161)
27 cd05483 retropepsin_like_bacte 98.1 9.4E-06 2E-10 66.3 7.5 92 79-191 2-94 (96)
28 PF05184 SapB_1: Saposin-like 97.4 0.00019 4E-09 48.5 4.0 37 376-412 3-39 (39)
29 TIGR02281 clan_AA_DTGA clan AA 97.2 0.0019 4.2E-08 55.5 8.9 101 70-191 2-103 (121)
30 PF13650 Asp_protease_2: Aspar 96.5 0.018 3.9E-07 46.0 8.8 88 82-190 1-89 (90)
31 cd05479 RP_DDI RP_DDI; retrope 95.8 0.061 1.3E-06 46.4 9.0 92 76-191 13-107 (124)
32 PF11925 DUF3443: Protein of u 95.5 0.084 1.8E-06 53.1 9.4 197 79-295 23-272 (370)
33 PF03489 SapB_2: Saposin-like 94.3 0.0046 9.9E-08 40.6 -2.0 34 312-345 2-35 (35)
34 COG3577 Predicted aspartyl pro 94.1 0.26 5.6E-06 45.6 8.1 92 65-170 91-183 (215)
35 cd05484 retropepsin_like_LTR_2 94.0 0.29 6.3E-06 39.5 7.6 75 80-171 1-78 (91)
36 cd05479 RP_DDI RP_DDI; retrope 93.2 1.2 2.6E-05 38.2 10.6 24 475-498 100-123 (124)
37 TIGR02281 clan_AA_DTGA clan AA 92.0 2.5 5.5E-05 36.1 10.9 36 255-300 9-44 (121)
38 cd06095 RP_RTVL_H_like Retrope 91.2 1.3 2.9E-05 35.2 7.8 81 83-191 2-84 (86)
39 PF08284 RVP_2: Retroviral asp 91.1 0.65 1.4E-05 40.6 6.4 27 475-501 105-131 (135)
40 smart00741 SapB Saposin (B) Do 86.0 1.1 2.4E-05 34.1 3.9 37 376-412 2-38 (76)
41 PF07966 A1_Propeptide: A1 Pro 85.0 0.8 1.7E-05 28.6 2.1 23 32-54 1-23 (29)
42 TIGR03698 clan_AA_DTGF clan AA 84.6 5.4 0.00012 33.3 7.7 23 475-497 85-107 (107)
43 PF13975 gag-asp_proteas: gag- 82.9 1.9 4.2E-05 33.1 4.0 34 76-111 5-38 (72)
44 PF13650 Asp_protease_2: Aspar 80.9 2.1 4.6E-05 33.7 3.8 29 265-300 3-31 (90)
45 PF13975 gag-asp_proteas: gag- 78.5 3.6 7.8E-05 31.6 4.2 29 265-300 13-41 (72)
46 cd05484 retropepsin_like_LTR_2 77.4 3.3 7.2E-05 33.2 3.9 30 264-300 4-33 (91)
47 PF09668 Asp_protease: Asparty 76.3 11 0.00023 32.4 6.8 91 77-190 22-114 (124)
48 PF00077 RVP: Retroviral aspar 75.3 4.1 8.9E-05 33.1 3.9 29 81-111 7-35 (100)
49 cd05483 retropepsin_like_bacte 71.6 5.9 0.00013 31.5 4.0 30 264-300 6-35 (96)
50 PF12384 Peptidase_A2B: Ty3 tr 71.4 27 0.00058 31.5 8.1 25 277-301 44-68 (177)
51 cd06095 RP_RTVL_H_like Retrope 69.8 5.5 0.00012 31.6 3.3 29 265-300 3-31 (86)
52 KOG1340 Prosaposin [Lipid tran 68.8 2.7 5.9E-05 39.7 1.5 88 313-412 78-166 (218)
53 TIGR03698 clan_AA_DTGF clan AA 62.8 49 0.0011 27.5 7.9 66 82-162 2-73 (107)
54 PF02160 Peptidase_A3: Caulifl 58.8 20 0.00043 33.5 5.2 50 427-499 66-115 (201)
55 PF00077 RVP: Retroviral aspar 57.7 8.5 0.00018 31.2 2.4 27 264-297 9-35 (100)
56 cd05482 HIV_retropepsin_like R 57.0 14 0.0003 29.7 3.4 27 83-111 2-28 (87)
57 cd06094 RP_Saci_like RP_Saci_l 55.8 84 0.0018 25.3 7.6 22 276-297 7-28 (89)
58 PF07172 GRP: Glycine rich pro 51.8 11 0.00023 30.9 2.0 13 1-13 1-13 (95)
59 smart00741 SapB Saposin (B) Do 51.7 2.8 6E-05 31.8 -1.4 36 310-345 41-76 (76)
60 PF09668 Asp_protease: Asparty 48.9 20 0.00044 30.8 3.4 29 265-300 29-57 (124)
61 cd05481 retropepsin_like_LTR_1 48.3 19 0.00042 29.1 3.0 22 280-301 12-33 (93)
62 COG3577 Predicted aspartyl pro 46.6 45 0.00097 31.2 5.4 30 264-300 109-138 (215)
63 PF12384 Peptidase_A2B: Ty3 tr 43.7 29 0.00063 31.2 3.6 43 67-109 17-62 (177)
64 COG5550 Predicted aspartyl pro 33.0 27 0.00058 29.9 1.6 21 281-301 29-50 (125)
65 KOG1340 Prosaposin [Lipid tran 32.4 10 0.00022 36.0 -1.1 44 303-346 161-204 (218)
66 PRK02710 plastocyanin; Provisi 24.1 1.1E+02 0.0024 25.9 3.9 21 1-21 1-21 (119)
67 PF08284 RVP_2: Retroviral asp 21.6 1.1E+02 0.0024 26.5 3.5 30 77-108 19-48 (135)
68 cd00303 retropepsin_like Retro 20.9 1.6E+02 0.0035 21.3 4.1 21 280-300 11-31 (92)
69 cd05480 NRIP_C NRIP_C; putativ 20.6 1.3E+02 0.0028 24.9 3.3 28 266-300 4-31 (103)
No 1
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=7.4e-67 Score=547.98 Aligned_cols=358 Identities=36% Similarity=0.681 Sum_probs=304.2
Q ss_pred ceEEEeeeeeccchhhHHHhc---ccccc---ccc--cc-cCCCCceeEeceeccCceEEEEEEecCCCceEEEEEcCCC
Q 010696 31 GLLRIQLKKRQLGINTINAAR---LITKN---EVH--NR-FNHPKADVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGS 101 (503)
Q Consensus 31 ~~~~ipL~~~~~~~~~~~~~~---~~~~~---~~~--~~-~~~~~~~~~~l~~~~~~~Y~~~i~iGtPpQ~~~v~~DTGS 101 (503)
.++|+||+|.++.|+.+.+.+ +..+. +.. .+ ........+||.|+.|.+|+++|+||||||+|+|++||||
T Consensus 63 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGS 142 (482)
T PTZ00165 63 PAHKVELHRFALLKKKRKKNSEKGYISRVLTKHKYLETKDPNGLQYLQQDLLNFHNSQYFGEIQVGTPPKSFVVVFDTGS 142 (482)
T ss_pred heEEeeeEEcchHHHhhhhHHHHHhhhhhhhccccccccccccccccceecccccCCeEEEEEEeCCCCceEEEEEeCCC
Confidence 479999999887665444331 00010 000 00 0011457899999999999999999999999999999999
Q ss_pred CCeeEeCCCCCCCcccccCCcccCCCCccccc--c-c---eeEEEeeceeEEEEEEEEEEEECCeEeeeeEEEEEEeeCC
Q 010696 102 SNLWVPSSKCLFSISCYLHSRYRARLSRTYTK--I-V---PCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGL 175 (503)
Q Consensus 102 s~~wV~~~~C~~~~~C~~~~~y~p~~SsT~~~--~-~---~~~~~Yg~gs~~G~~~~D~v~lg~~~i~~~~Fg~~~~~~~ 175 (503)
+++||++..|. ...|..|+.|||++|+||++ . . .+.+.||+|++.|.+++|+|++|++.+++|.||+++..++
T Consensus 143 S~lWVps~~C~-~~~C~~~~~yd~s~SSTy~~~~~~~~~~~~~i~YGsGs~~G~l~~DtV~ig~l~i~~q~FG~a~~~s~ 221 (482)
T PTZ00165 143 SNLWIPSKECK-SGGCAPHRKFDPKKSSTYTKLKLGDESAETYIQYGTGECVLALGKDTVKIGGLKVKHQSIGLAIEESL 221 (482)
T ss_pred CCEEEEchhcC-cccccccCCCCccccCCcEecCCCCccceEEEEeCCCcEEEEEEEEEEEECCEEEccEEEEEEEeccc
Confidence 99999999997 56899999999999999998 4 3 6889999999999999999999999999999999998776
Q ss_pred ccccccccceeeecccccc---cCCCCCchHHHHHHcCCCCccEEEEEecCCCCCCCccEEEeCcccCCCc--ccCeeEE
Q 010696 176 LPFLALQFDGILGLGFRDI---AAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHF--RGSHIYV 250 (503)
Q Consensus 176 ~~~~~~~~dGIlGLg~~~~---s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~~G~l~fGgiD~~~~--~g~l~~~ 250 (503)
..|....+|||||||++.. +.....|++++|++||+|++++||+||.+..+ .+|+|+|||+|++++ .|++.|+
T Consensus 222 ~~f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~--~~G~l~fGGiD~~~~~~~g~i~~~ 299 (482)
T PTZ00165 222 HPFADLPFDGLVGLGFPDKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDLN--QPGSISFGSADPKYTLEGHKIWWF 299 (482)
T ss_pred cccccccccceeecCCCcccccccCCCCCHHHHHHHcCCcccceEEEEeccCCC--CCCEEEeCCcCHHHcCCCCceEEE
Confidence 6677778999999999876 33457899999999999999999999986532 379999999999877 5789999
Q ss_pred ecccccceEEEEeeEEEcCeEeeeccCCceEEEccCccCcccCHHHHHHHHHHhCCccccccccceeeeecchhhhhhhh
Q 010696 251 PITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAEGIVSMQCKTVVFEYGNMIWEFLI 330 (503)
Q Consensus 251 p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~l~~~~~~~~~c~~~~~~~~~~~~~~~~ 330 (503)
|+.+.+||+|.+++|+++++.+..+..++.||+||||+++++|++++++|.+++++.
T Consensus 300 Pv~~~~yW~i~l~~i~vgg~~~~~~~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~----------------------- 356 (482)
T PTZ00165 300 PVISTDYWEIEVVDILIDGKSLGFCDRKCKAAIDTGSSLITGPSSVINPLLEKIPLE----------------------- 356 (482)
T ss_pred EccccceEEEEeCeEEECCEEeeecCCceEEEEcCCCccEeCCHHHHHHHHHHcCCc-----------------------
Confidence 999999999999999999988776667889999999999999999999999887543
Q ss_pred cCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCccccchhhhHHHHHHHHHHhhhhhHHHHHHHHhhhhcc
Q 010696 331 SGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVFWIQMQLKQQKTKEAIFKYADKLCEV 410 (503)
Q Consensus 331 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 410 (503)
T Consensus 357 -------------------------------------------------------------------------------- 356 (482)
T PTZ00165 357 -------------------------------------------------------------------------------- 356 (482)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCceEEeCCCCCCCCeEEEEECCE-----EEEeCcccceEeec--cCcceeEEEeeEeccCCCCCCCeEEeCHhhh
Q 010696 411 LPNPMGKSFINCDDIASMPYVSFTIGNR-----SFPLSPEQYIFKIE--EGHSTICISGFIALDVPPPQGPLWVLGDMFL 483 (503)
Q Consensus 411 ~~~~~~~~~~~C~~~~~~P~i~f~~~g~-----~~~l~p~~yi~~~~--~~~~~~C~~~~~~~~~~~~~~~~~ILG~~Fl 483 (503)
.+|+.++.+|+|+|+|+|. +|.|+|++|+++.. ......|+++|...+.+.+.++.||||++||
T Consensus 357 ---------~~C~~~~~lP~itf~f~g~~g~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Fl 427 (482)
T PTZ00165 357 ---------EDCSNKDSLPRISFVLEDVNGRKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFI 427 (482)
T ss_pred ---------ccccccccCCceEEEECCCCCceEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhh
Confidence 1788778899999999864 89999999999752 3345689999998887666678999999999
Q ss_pred cceEEEEeCCCCeEEEEecC
Q 010696 484 RAYHTVFDFGNLQIGFAEAA 503 (503)
Q Consensus 484 ~~~y~vfD~~~~riGfa~~~ 503 (503)
|+||+|||.+|+|||||+++
T Consensus 428 r~yy~VFD~~n~rIGfA~a~ 447 (482)
T PTZ00165 428 RKYYSIFDRDHMMVGLVPAK 447 (482)
T ss_pred eeEEEEEeCCCCEEEEEeec
Confidence 99999999999999999975
No 2
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=7.6e-64 Score=505.23 Aligned_cols=316 Identities=64% Similarity=1.230 Sum_probs=283.5
Q ss_pred EeceeccCceEEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCcccccCCcccCCCCcccccc-ceeEEEeeceeEEE
Q 010696 70 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKI-VPCKIHYGSGQISG 148 (503)
Q Consensus 70 ~~l~~~~~~~Y~~~i~iGtPpQ~~~v~~DTGSs~~wV~~~~C~~~~~C~~~~~y~p~~SsT~~~~-~~~~~~Yg~gs~~G 148 (503)
|||.|+.|.+|+++|+||||||+++|++||||+++||++..|.....|..++.|+|++|+||+.. ..+.+.|++|++.|
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G 80 (317)
T cd06098 1 VALKNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYKSSKSSTYKKNGTSASIQYGTGSISG 80 (317)
T ss_pred CcccccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccccccCcCCcccCCCcccCCCEEEEEcCCceEEE
Confidence 57899999999999999999999999999999999999999964457999999999999999988 89999999999999
Q ss_pred EEEEEEEEECCeEeeeeEEEEEEeeCCccccccccceeeecccccccCCCCCchHHHHHHcCCCCccEEEEEecCCCCCC
Q 010696 149 FFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSE 228 (503)
Q Consensus 149 ~~~~D~v~lg~~~i~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~ 228 (503)
.+++|+|++|+..++++.||+++...+..|....+|||||||++..+.....|++.+|++||+|++++||+||.+.....
T Consensus 81 ~~~~D~v~ig~~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~ 160 (317)
T cd06098 81 FFSQDSVTVGDLVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEE 160 (317)
T ss_pred EEEeeEEEECCEEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCC
Confidence 99999999999999999999998876655666788999999999887777788999999999999999999998754334
Q ss_pred CccEEEeCcccCCCcccCeeEEecccccceEEEEeeEEEcCeEeeeccCCceEEEccCccCcccCHHHHHHHHHHhCCcc
Q 010696 229 VGGEIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAEG 308 (503)
Q Consensus 229 ~~G~l~fGgiD~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~l~~~~ 308 (503)
..|+|+|||+|+++|.|+++|+|+...++|.+.+++|+|+++.+..+.....++|||||+++++|+++++++.
T Consensus 161 ~~G~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~~~~~i~------- 233 (317)
T cd06098 161 EGGELVFGGVDPKHFKGEHTYVPVTRKGYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTTIVTQIN------- 233 (317)
T ss_pred CCcEEEECccChhhcccceEEEecCcCcEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHHHHHhhh-------
Confidence 5899999999999999999999999889999999999999998766667788999999999999998765431
Q ss_pred ccccccceeeeecchhhhhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCccccchhhhHHHHHHH
Q 010696 309 IVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVFWIQ 388 (503)
Q Consensus 309 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (503)
T Consensus 234 -------------------------------------------------------------------------------- 233 (317)
T cd06098 234 -------------------------------------------------------------------------------- 233 (317)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhhhHHHHHHHHhhhhccCCCCCCceEEeCCCCCCCCeEEEEECCEEEEeCcccceEeeccCcceeEEEeeEeccC
Q 010696 389 MQLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDV 468 (503)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~~g~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~ 468 (503)
+.++|+.+.++|+|+|+|+|++++|+|++|+++..++....|+++|+..+.
T Consensus 234 -----------------------------~~~~C~~~~~~P~i~f~f~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~ 284 (317)
T cd06098 234 -----------------------------SAVDCNSLSSMPNVSFTIGGKTFELTPEQYILKVGEGAAAQCISGFTALDV 284 (317)
T ss_pred -----------------------------ccCCccccccCCcEEEEECCEEEEEChHHeEEeecCCCCCEEeceEEECCC
Confidence 345888777899999999999999999999998765556789999988775
Q ss_pred CCCCCCeEEeCHhhhcceEEEEeCCCCeEEEEe
Q 010696 469 PPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAE 501 (503)
Q Consensus 469 ~~~~~~~~ILG~~Fl~~~y~vfD~~~~riGfa~ 501 (503)
....++.||||++|||++|+|||++|+|||||+
T Consensus 285 ~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 285 PPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred CCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 544556899999999999999999999999996
No 3
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=1.6e-63 Score=504.89 Aligned_cols=323 Identities=47% Similarity=0.956 Sum_probs=285.3
Q ss_pred eccCceEEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCC-CcccccCCcccCCCCcccccc-ceeEEEeeceeEEEEEE
Q 010696 74 NYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLF-SISCYLHSRYRARLSRTYTKI-VPCKIHYGSGQISGFFS 151 (503)
Q Consensus 74 ~~~~~~Y~~~i~iGtPpQ~~~v~~DTGSs~~wV~~~~C~~-~~~C~~~~~y~p~~SsT~~~~-~~~~~~Yg~gs~~G~~~ 151 (503)
|+.|.+|+++|.||||||+++|++||||+++||+|..|.. ...|..++.|+|++|+||+.. +.+.+.|++|++.|.++
T Consensus 1 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G~~~ 80 (325)
T cd05490 1 NYMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTYVKNGTEFAIQYGSGSLSGYLS 80 (325)
T ss_pred CCcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCcCcCCcccCcceeeCCcEEEEEECCcEEEEEEe
Confidence 4678999999999999999999999999999999999963 236888999999999999998 99999999999999999
Q ss_pred EEEEEECCeEeeeeEEEEEEeeCCccccccccceeeecccccccCCCCCchHHHHHHcCCCCccEEEEEecCCCCCCCcc
Q 010696 152 QDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGG 231 (503)
Q Consensus 152 ~D~v~lg~~~i~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~~G 231 (503)
+|+|++|+..++++.||+++...+..+....++||||||++..+.....|++++|++||.|.+++||+||.+..+...+|
T Consensus 81 ~D~v~~g~~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G 160 (325)
T cd05490 81 QDTVSIGGLQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGG 160 (325)
T ss_pred eeEEEECCEEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCC
Confidence 99999999999999999998876655556678999999999887777889999999999999999999998754333479
Q ss_pred EEEeCcccCCCcccCeeEEecccccceEEEEeeEEEcCeEeeeccCCceEEEccCccCcccCHHHHHHHHHHhCCccccc
Q 010696 232 EIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAEGIVS 311 (503)
Q Consensus 232 ~l~fGgiD~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~l~~~~~~~ 311 (503)
+|+|||+|++++.|++.|+|+.+..+|.|++++|+|++... .+..+..++|||||+++++|.+++++|.+++++.
T Consensus 161 ~l~~Gg~d~~~~~g~l~~~~~~~~~~w~v~l~~i~vg~~~~-~~~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~---- 235 (325)
T cd05490 161 ELMLGGTDPKYYTGDLHYVNVTRKAYWQIHMDQVDVGSGLT-LCKGGCEAIVDTGTSLITGPVEEVRALQKAIGAV---- 235 (325)
T ss_pred EEEECccCHHHcCCceEEEEcCcceEEEEEeeEEEECCeee-ecCCCCEEEECCCCccccCCHHHHHHHHHHhCCc----
Confidence 99999999999999999999998899999999999988643 3455678999999999999999999999888543
Q ss_pred cccceeeeecchhhhhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCccccchhhhHHHHHHHHHH
Q 010696 312 MQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVFWIQMQL 391 (503)
Q Consensus 312 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (503)
T Consensus 236 -------------------------------------------------------------------------------- 235 (325)
T cd05490 236 -------------------------------------------------------------------------------- 235 (325)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhHHHHHHHHhhhhccCCCCCCceEEeCCCCCCCCeEEEEECCEEEEeCcccceEeeccCcceeEEEeeEeccCCCC
Q 010696 392 KQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPP 471 (503)
Q Consensus 392 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~~g~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~~~ 471 (503)
+...+.|.++|+....+|+|+|+|+|+.++|+|++|+++........|+++|+..+++++
T Consensus 236 --------------------~~~~~~~~~~C~~~~~~P~i~f~fgg~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~ 295 (325)
T cd05490 236 --------------------PLIQGEYMIDCEKIPTLPVISFSLGGKVYPLTGEDYILKVSQRGTTICLSGFMGLDIPPP 295 (325)
T ss_pred --------------------cccCCCEEecccccccCCCEEEEECCEEEEEChHHeEEeccCCCCCEEeeEEEECCCCCC
Confidence 112456889999888899999999999999999999997654445689999988776544
Q ss_pred CCCeEEeCHhhhcceEEEEeCCCCeEEEEe
Q 010696 472 QGPLWVLGDMFLRAYHTVFDFGNLQIGFAE 501 (503)
Q Consensus 472 ~~~~~ILG~~Fl~~~y~vfD~~~~riGfa~ 501 (503)
.++.||||++|||++|+|||++++|||||+
T Consensus 296 ~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 296 AGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred CCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 567899999999999999999999999996
No 4
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=5.5e-63 Score=499.03 Aligned_cols=315 Identities=43% Similarity=0.860 Sum_probs=280.5
Q ss_pred EEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCcccccCCcccCCCCcccccc-ceeEEEeeceeEEEEEEEEEEEEC
Q 010696 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKI-VPCKIHYGSGQISGFFSQDNVKIG 158 (503)
Q Consensus 80 Y~~~i~iGtPpQ~~~v~~DTGSs~~wV~~~~C~~~~~C~~~~~y~p~~SsT~~~~-~~~~~~Yg~gs~~G~~~~D~v~lg 158 (503)
|+++|+||||||+++|+|||||+++||++..|. ...|..++.|||++|+||+.. +.+.+.|++|++.|.+++|+|+++
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~~~G~~~~D~v~ig 79 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCT-SQACTKHNRFQPSESSTYVSNGEAFSIQYGTGSLTGIIGIDQVTVE 79 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCC-CcccCccceECCCCCcccccCCcEEEEEeCCcEEEEEeeecEEEEC
Confidence 899999999999999999999999999999997 457999999999999999988 999999999999999999999999
Q ss_pred CeEeeeeEEEEEEeeCCccccccccceeeecccccccCCCCCchHHHHHHcCCCCccEEEEEecCCCCCCCccEEEeCcc
Q 010696 159 DMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGF 238 (503)
Q Consensus 159 ~~~i~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~~G~l~fGgi 238 (503)
+..++++.||++..+.+..|....+|||||||++..+.....|++++|++||+|++++||+||+++++....|+|+|||+
T Consensus 80 ~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~ 159 (316)
T cd05486 80 GITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGF 159 (316)
T ss_pred CEEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEccc
Confidence 99999999999887665556566789999999998876677889999999999999999999987543345799999999
Q ss_pred cCCCcccCeeEEecccccceEEEEeeEEEcCeEeeeccCCceEEEccCccCcccCHHHHHHHHHHhCCccccccccceee
Q 010696 239 DWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAEGIVSMQCKTVV 318 (503)
Q Consensus 239 D~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~l~~~~~~~~~c~~~~ 318 (503)
|+++|.|++.|+|+.+.++|.|.+++|+|+++.+. +..+..++|||||+++++|++++++|.+.+++.
T Consensus 160 d~~~~~g~l~~~pi~~~~~w~v~l~~i~v~g~~~~-~~~~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~----------- 227 (316)
T cd05486 160 DTSRFSGQLNWVPVTVQGYWQIQLDNIQVGGTVIF-CSDGCQAIVDTGTSLITGPSGDIKQLQNYIGAT----------- 227 (316)
T ss_pred CHHHcccceEEEECCCceEEEEEeeEEEEecceEe-cCCCCEEEECCCcchhhcCHHHHHHHHHHhCCc-----------
Confidence 99999999999999999999999999999998764 345678999999999999999999998887543
Q ss_pred eecchhhhhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCccccchhhhHHHHHHHHHHhhhhhHH
Q 010696 319 FEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVFWIQMQLKQQKTKE 398 (503)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (503)
T Consensus 228 -------------------------------------------------------------------------------- 227 (316)
T cd05486 228 -------------------------------------------------------------------------------- 227 (316)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhhhccCCCCCCceEEeCCCCCCCCeEEEEECCEEEEeCcccceEeeccCcceeEEEeeEeccCCCCCCCeEEe
Q 010696 399 AIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPLWVL 478 (503)
Q Consensus 399 ~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~~g~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IL 478 (503)
...+.|.+||+....+|+|+|+|+|++++|+|++|++.........|+++|+..++.+..++.|||
T Consensus 228 --------------~~~~~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~IL 293 (316)
T cd05486 228 --------------ATDGEYGVDCSTLSLMPSVTFTINGIPYSLSPQAYTLEDQSDGGGYCSSGFQGLDIPPPAGPLWIL 293 (316)
T ss_pred --------------ccCCcEEEeccccccCCCEEEEECCEEEEeCHHHeEEecccCCCCEEeeEEEECCCCCCCCCeEEE
Confidence 113568899998888999999999999999999999875333456899999887654445568999
Q ss_pred CHhhhcceEEEEeCCCCeEEEEe
Q 010696 479 GDMFLRAYHTVFDFGNLQIGFAE 501 (503)
Q Consensus 479 G~~Fl~~~y~vfD~~~~riGfa~ 501 (503)
|++|||++|+|||.+++|||||+
T Consensus 294 Gd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 294 GDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred chHHhcceEEEEeCCCCEeeccC
Confidence 99999999999999999999996
No 5
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=2.2e-62 Score=496.63 Aligned_cols=324 Identities=44% Similarity=0.886 Sum_probs=287.0
Q ss_pred ceeccCceEEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCC-cccccCCcccCCCCcccccc-ceeEEEeeceeEEEE
Q 010696 72 LNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFS-ISCYLHSRYRARLSRTYTKI-VPCKIHYGSGQISGF 149 (503)
Q Consensus 72 l~~~~~~~Y~~~i~iGtPpQ~~~v~~DTGSs~~wV~~~~C~~~-~~C~~~~~y~p~~SsT~~~~-~~~~~~Yg~gs~~G~ 149 (503)
|.|+.|..|+++|+||||||+++|++||||+++||++..|... ..|..++.|+|++|+||+.. +.+.+.|++|++.|.
T Consensus 1 ~~~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~~~~~~~~Yg~g~~~G~ 80 (326)
T cd05487 1 LTNYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKENGTEFTIHYASGTVKGF 80 (326)
T ss_pred CcccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeECCEEEEEEeCCceEEEE
Confidence 4678899999999999999999999999999999999999731 46888999999999999988 999999999999999
Q ss_pred EEEEEEEECCeEeeeeEEEEEEeeCCccccccccceeeecccccccCCCCCchHHHHHHcCCCCccEEEEEecCCCCCCC
Q 010696 150 FSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEV 229 (503)
Q Consensus 150 ~~~D~v~lg~~~i~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~ 229 (503)
+++|+|++++..+. +.||++.......+....+|||||||++..+..+..|++++|++||.|++++||+||.+.++...
T Consensus 81 ~~~D~v~~g~~~~~-~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~ 159 (326)
T cd05487 81 LSQDIVTVGGIPVT-QMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSL 159 (326)
T ss_pred EeeeEEEECCEEee-EEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCC
Confidence 99999999998885 78999987654445556789999999988776677899999999999999999999987643345
Q ss_pred ccEEEeCcccCCCcccCeeEEecccccceEEEEeeEEEcCeEeeeccCCceEEEccCccCcccCHHHHHHHHHHhCCccc
Q 010696 230 GGEIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAEGI 309 (503)
Q Consensus 230 ~G~l~fGgiD~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~l~~~~~ 309 (503)
.|+|+|||+|+++|.|+++|+|+...++|+|.+++++|+++.+. +..+..++|||||+++++|.++++++++++++..
T Consensus 160 ~G~l~fGg~d~~~y~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~-~~~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~- 237 (326)
T cd05487 160 GGEIVLGGSDPQHYQGDFHYINTSKTGFWQIQMKGVSVGSSTLL-CEDGCTAVVDTGASFISGPTSSISKLMEALGAKE- 237 (326)
T ss_pred CcEEEECCcChhhccCceEEEECCcCceEEEEecEEEECCEEEe-cCCCCEEEECCCccchhCcHHHHHHHHHHhCCcc-
Confidence 89999999999999999999999989999999999999998764 3456789999999999999999999999886540
Q ss_pred cccccceeeeecchhhhhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCccccchhhhHHHHHHHH
Q 010696 310 VSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVFWIQM 389 (503)
Q Consensus 310 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (503)
T Consensus 238 -------------------------------------------------------------------------------- 237 (326)
T cd05487 238 -------------------------------------------------------------------------------- 237 (326)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhhhHHHHHHHHhhhhccCCCCCCceEEeCCCCCCCCeEEEEECCEEEEeCcccceEeeccCcceeEEEeeEeccCC
Q 010696 390 QLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVP 469 (503)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~~g~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~ 469 (503)
..+.|.+||+....+|.|+|+|++.+++|++++|+++..+.....|+++|+..+.+
T Consensus 238 ------------------------~~~~y~~~C~~~~~~P~i~f~fgg~~~~v~~~~yi~~~~~~~~~~C~~~~~~~~~~ 293 (326)
T cd05487 238 ------------------------RLGDYVVKCNEVPTLPDISFHLGGKEYTLSSSDYVLQDSDFSDKLCTVAFHAMDIP 293 (326)
T ss_pred ------------------------cCCCEEEeccccCCCCCEEEEECCEEEEeCHHHhEEeccCCCCCEEEEEEEeCCCC
Confidence 13568899998888999999999999999999999986655567899999987754
Q ss_pred CCCCCeEEeCHhhhcceEEEEeCCCCeEEEEec
Q 010696 470 PPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEA 502 (503)
Q Consensus 470 ~~~~~~~ILG~~Fl~~~y~vfD~~~~riGfa~~ 502 (503)
.+.++.||||++|||++|+|||++++|||||+|
T Consensus 294 ~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 294 PPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred CCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 445568999999999999999999999999986
No 6
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=1.6e-61 Score=490.71 Aligned_cols=326 Identities=48% Similarity=0.949 Sum_probs=289.0
Q ss_pred EeceeccCceEEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCC-CcccccCCcccCCCCcccccc-ceeEEEeeceeEE
Q 010696 70 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLF-SISCYLHSRYRARLSRTYTKI-VPCKIHYGSGQIS 147 (503)
Q Consensus 70 ~~l~~~~~~~Y~~~i~iGtPpQ~~~v~~DTGSs~~wV~~~~C~~-~~~C~~~~~y~p~~SsT~~~~-~~~~~~Yg~gs~~ 147 (503)
.+|.|+.|..|+++|+||||+|+++|++||||+++||+|..|.. ...|..++.|+|++|+|++.. +.+.+.|++|++.
T Consensus 2 ~~~~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~Sst~~~~~~~~~i~Y~~g~~~ 81 (329)
T cd05485 2 EPLSNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLHNKYDSTKSSTYKKNGTEFAIQYGSGSLS 81 (329)
T ss_pred ccceeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccCCCeECCcCCCCeEECCeEEEEEECCceEE
Confidence 47899999999999999999999999999999999999999962 236888889999999999988 9999999999999
Q ss_pred EEEEEEEEEECCeEeeeeEEEEEEeeCCccccccccceeeecccccccCCCCCchHHHHHHcCCCCccEEEEEecCCCCC
Q 010696 148 GFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNS 227 (503)
Q Consensus 148 G~~~~D~v~lg~~~i~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~ 227 (503)
|.+++|++++|+..++++.||++..+.+..+.....+||||||++..+.....|++.+|++||+|++++||+||.+..+.
T Consensus 82 G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~ 161 (329)
T cd05485 82 GFLSTDTVSVGGVSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSA 161 (329)
T ss_pred EEEecCcEEECCEEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHHhCCCCCCCEEEEEecCCCCC
Confidence 99999999999999999999999877654455667899999999887766778899999999999999999999875443
Q ss_pred CCccEEEeCcccCCCcccCeeEEecccccceEEEEeeEEEcCeEeeeccCCceEEEccCccCcccCHHHHHHHHHHhCCc
Q 010696 228 EVGGEIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAE 307 (503)
Q Consensus 228 ~~~G~l~fGgiD~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~l~~~ 307 (503)
...|+|+|||+|++++.|+++|+|+.+.++|.|.++++.++++.+. ..+..++|||||+++++|++++++|.+++++.
T Consensus 162 ~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~~~~i~v~~~~~~--~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~ 239 (329)
T cd05485 162 KEGGELILGGSDPKHYTGNFTYLPVTRKGYWQFKMDSVSVGEGEFC--SGGCQAIADTGTSLIAGPVDEIEKLNNAIGAK 239 (329)
T ss_pred CCCcEEEEcccCHHHcccceEEEEcCCceEEEEEeeEEEECCeeec--CCCcEEEEccCCcceeCCHHHHHHHHHHhCCc
Confidence 4579999999999999999999999999999999999999998753 56678999999999999999999999888654
Q ss_pred cccccccceeeeecchhhhhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCccccchhhhHHHHHH
Q 010696 308 GIVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVFWI 387 (503)
Q Consensus 308 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (503)
.
T Consensus 240 ~------------------------------------------------------------------------------- 240 (329)
T cd05485 240 P------------------------------------------------------------------------------- 240 (329)
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred HHHHhhhhhHHHHHHHHhhhhccCCCCCCceEEeCCCCCCCCeEEEEECCEEEEeCcccceEeeccCcceeEEEeeEecc
Q 010696 388 QMQLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALD 467 (503)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~~g~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~ 467 (503)
...+.|.+||+...++|+|+|+|+|+++.|+|++|+++........|+++|...+
T Consensus 241 -------------------------~~~~~~~~~C~~~~~~p~i~f~fgg~~~~i~~~~yi~~~~~~~~~~C~~~~~~~~ 295 (329)
T cd05485 241 -------------------------IIGGEYMVNCSAIPSLPDITFVLGGKSFSLTGKDYVLKVTQMGQTICLSGFMGID 295 (329)
T ss_pred -------------------------ccCCcEEEeccccccCCcEEEEECCEEeEEChHHeEEEecCCCCCEEeeeEEECc
Confidence 0135688999988889999999999999999999999876555578999998776
Q ss_pred CCCCCCCeEEeCHhhhcceEEEEeCCCCeEEEEe
Q 010696 468 VPPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAE 501 (503)
Q Consensus 468 ~~~~~~~~~ILG~~Fl~~~y~vfD~~~~riGfa~ 501 (503)
+++..++.||||++|||++|+|||++++|||||+
T Consensus 296 ~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 296 IPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred CCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 5444556899999999999999999999999985
No 7
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=1.8e-61 Score=488.20 Aligned_cols=315 Identities=44% Similarity=0.827 Sum_probs=281.1
Q ss_pred eceeccCceEEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCcccccCCcccCCCCcccccc-ceeEEEeeceeEEEE
Q 010696 71 YLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKI-VPCKIHYGSGQISGF 149 (503)
Q Consensus 71 ~l~~~~~~~Y~~~i~iGtPpQ~~~v~~DTGSs~~wV~~~~C~~~~~C~~~~~y~p~~SsT~~~~-~~~~~~Yg~gs~~G~ 149 (503)
||.|+.+..|+++|.||||||++.|++||||+++||+|..|. ...|..++.|||++|+|++.. +.+.+.|++|++.|.
T Consensus 2 ~l~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~-~~~c~~~~~f~~~~Sst~~~~~~~~~~~yg~gs~~G~ 80 (317)
T cd05478 2 PLTNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCS-SQACSNHNRFNPRQSSTYQSTGQPLSIQYGTGSMTGI 80 (317)
T ss_pred ccccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCC-cccccccCcCCCCCCcceeeCCcEEEEEECCceEEEE
Confidence 789999999999999999999999999999999999999997 457988999999999999998 999999999999999
Q ss_pred EEEEEEEECCeEeeeeEEEEEEeeCCccccccccceeeecccccccCCCCCchHHHHHHcCCCCccEEEEEecCCCCCCC
Q 010696 150 FSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEV 229 (503)
Q Consensus 150 ~~~D~v~lg~~~i~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~ 229 (503)
+++|+|++|+..++++.||++....+..+.....|||||||++..+..+..|++++|++||+|++++||+||.+... .
T Consensus 81 ~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~--~ 158 (317)
T cd05478 81 LGYDTVQVGGISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQGLVSQDLFSVYLSSNGQ--Q 158 (317)
T ss_pred EeeeEEEECCEEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHhCCCCCCCEEEEEeCCCCC--C
Confidence 99999999999999999999987655433344679999999988776677889999999999999999999988632 3
Q ss_pred ccEEEeCcccCCCcccCeeEEecccccceEEEEeeEEEcCeEeeeccCCceEEEccCccCcccCHHHHHHHHHHhCCccc
Q 010696 230 GGEIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAEGI 309 (503)
Q Consensus 230 ~G~l~fGgiD~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~l~~~~~ 309 (503)
+|+|+|||+|+++|.|+++|+|+....+|.|.++++.|+++.+. ...+..++|||||+++++|++++++|.+++++..
T Consensus 159 ~g~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~l~~v~v~g~~~~-~~~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~- 236 (317)
T cd05478 159 GSVVTFGGIDPSYYTGSLNWVPVTAETYWQITVDSVTINGQVVA-CSGGCQAIVDTGTSLLVGPSSDIANIQSDIGASQ- 236 (317)
T ss_pred CeEEEEcccCHHHccCceEEEECCCCcEEEEEeeEEEECCEEEc-cCCCCEEEECCCchhhhCCHHHHHHHHHHhCCcc-
Confidence 79999999999999999999999988999999999999999874 3456789999999999999999999999886540
Q ss_pred cccccceeeeecchhhhhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCccccchhhhHHHHHHHH
Q 010696 310 VSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVFWIQM 389 (503)
Q Consensus 310 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (503)
T Consensus 237 -------------------------------------------------------------------------------- 236 (317)
T cd05478 237 -------------------------------------------------------------------------------- 236 (317)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhhhHHHHHHHHhhhhccCCCCCCceEEeCCCCCCCCeEEEEECCEEEEeCcccceEeeccCcceeEEEeeEeccCC
Q 010696 390 QLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVP 469 (503)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~~g~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~ 469 (503)
...+.|.+||+....+|.|+|+|+|++++|+|++|+.+. ...|++.|+..+
T Consensus 237 -----------------------~~~~~~~~~C~~~~~~P~~~f~f~g~~~~i~~~~y~~~~----~~~C~~~~~~~~-- 287 (317)
T cd05478 237 -----------------------NQNGEMVVNCSSISSMPDVVFTINGVQYPLPPSAYILQD----QGSCTSGFQSMG-- 287 (317)
T ss_pred -----------------------ccCCcEEeCCcCcccCCcEEEEECCEEEEECHHHheecC----CCEEeEEEEeCC--
Confidence 124568899998888999999999999999999999864 358999887543
Q ss_pred CCCCCeEEeCHhhhcceEEEEeCCCCeEEEEe
Q 010696 470 PPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAE 501 (503)
Q Consensus 470 ~~~~~~~ILG~~Fl~~~y~vfD~~~~riGfa~ 501 (503)
..+.||||++|||++|+|||++|+|||||+
T Consensus 288 --~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 288 --LGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred --CCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 245899999999999999999999999996
No 8
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=6.9e-61 Score=484.46 Aligned_cols=319 Identities=43% Similarity=0.816 Sum_probs=283.6
Q ss_pred EeceeccCceEEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCcccccCCcccCCCCcccccc-ceeEEEeeceeEEE
Q 010696 70 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKI-VPCKIHYGSGQISG 148 (503)
Q Consensus 70 ~~l~~~~~~~Y~~~i~iGtPpQ~~~v~~DTGSs~~wV~~~~C~~~~~C~~~~~y~p~~SsT~~~~-~~~~~~Yg~gs~~G 148 (503)
+||.|+.|..|+++|+||||+|++.|++||||+++||+|..|. ...|..++.|+|++|+|++.. +.+.+.|++|++.|
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~-~~~C~~~~~y~~~~Sst~~~~~~~~~~~y~~g~~~G 79 (320)
T cd05488 1 VPLTNYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCG-SIACFLHSKYDSSASSTYKANGTEFKIQYGSGSLEG 79 (320)
T ss_pred CcccccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCC-CcccCCcceECCCCCcceeeCCCEEEEEECCceEEE
Confidence 5889999999999999999999999999999999999999997 557998899999999999988 99999999999999
Q ss_pred EEEEEEEEECCeEeeeeEEEEEEeeCCccccccccceeeecccccccCCCCCchHHHHHHcCCCCccEEEEEecCCCCCC
Q 010696 149 FFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSE 228 (503)
Q Consensus 149 ~~~~D~v~lg~~~i~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~ 228 (503)
.+++|++++++..++++.|+++....+..+.....|||||||++..+.....|.+.+|++||+|.+++||+||++.. .
T Consensus 80 ~~~~D~v~ig~~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~--~ 157 (320)
T cd05488 80 FVSQDTLSIGDLTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMINQGLLDEPVFSFYLGSSE--E 157 (320)
T ss_pred EEEEeEEEECCEEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEecCCC--C
Confidence 99999999999999999999998776654555678999999998877666778889999999999999999999853 2
Q ss_pred CccEEEeCcccCCCcccCeeEEecccccceEEEEeeEEEcCeEeeeccCCceEEEccCccCcccCHHHHHHHHHHhCCcc
Q 010696 229 VGGEIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAEG 308 (503)
Q Consensus 229 ~~G~l~fGgiD~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~l~~~~ 308 (503)
..|.|+|||+|++++.|+++|+|+...++|.|.+++++||++.+. ..+..++|||||+++++|++++++|.+++++..
T Consensus 158 ~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~--~~~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~ 235 (320)
T cd05488 158 DGGEATFGGIDESRFTGKITWLPVRRKAYWEVELEKIGLGDEELE--LENTGAAIDTGTSLIALPSDLAEMLNAEIGAKK 235 (320)
T ss_pred CCcEEEECCcCHHHcCCceEEEeCCcCcEEEEEeCeEEECCEEec--cCCCeEEEcCCcccccCCHHHHHHHHHHhCCcc
Confidence 379999999999999999999999988999999999999998764 345679999999999999999999998886540
Q ss_pred ccccccceeeeecchhhhhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCccccchhhhHHHHHHH
Q 010696 309 IVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVFWIQ 388 (503)
Q Consensus 309 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (503)
T Consensus 236 -------------------------------------------------------------------------------- 235 (320)
T cd05488 236 -------------------------------------------------------------------------------- 235 (320)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhhhHHHHHHHHhhhhccCCCCCCceEEeCCCCCCCCeEEEEECCEEEEeCcccceEeeccCcceeEEEeeEeccC
Q 010696 389 MQLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDV 468 (503)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~~g~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~ 468 (503)
...+.|.+||+....+|.|+|+|+|+++.|+|++|+++. .+.|++.+...+.
T Consensus 236 ------------------------~~~~~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~----~g~C~~~~~~~~~ 287 (320)
T cd05488 236 ------------------------SWNGQYTVDCSKVDSLPDLTFNFDGYNFTLGPFDYTLEV----SGSCISAFTGMDF 287 (320)
T ss_pred ------------------------ccCCcEEeeccccccCCCEEEEECCEEEEECHHHheecC----CCeEEEEEEECcC
Confidence 124568899998888999999999999999999999853 2479999987665
Q ss_pred CCCCCCeEEeCHhhhcceEEEEeCCCCeEEEEe
Q 010696 469 PPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAE 501 (503)
Q Consensus 469 ~~~~~~~~ILG~~Fl~~~y~vfD~~~~riGfa~ 501 (503)
+...++.||||++|||++|+|||++++|||||+
T Consensus 288 ~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 288 PEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred CCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 433456899999999999999999999999996
No 9
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=1.4e-60 Score=482.02 Aligned_cols=316 Identities=43% Similarity=0.847 Sum_probs=280.4
Q ss_pred CceEEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCcccccCCcccCCCCcccccc-ceeEEEeeceeEEEEEEEEEE
Q 010696 77 DAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKI-VPCKIHYGSGQISGFFSQDNV 155 (503)
Q Consensus 77 ~~~Y~~~i~iGtPpQ~~~v~~DTGSs~~wV~~~~C~~~~~C~~~~~y~p~~SsT~~~~-~~~~~~Yg~gs~~G~~~~D~v 155 (503)
|..|+++|+||||||++.|++||||+++||++..|. ...|..++.|||++|+||+.. +.+.+.|++|++.|.+++|++
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~-~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs~~G~~~~D~i 79 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQ-SQACTNHTKFNPSQSSTYSTNGETFSLQYGSGSLTGIFGYDTV 79 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCC-CccccccCCCCcccCCCceECCcEEEEEECCcEEEEEEEeeEE
Confidence 468999999999999999999999999999999997 457998999999999999988 999999999999999999999
Q ss_pred EECCeEeeeeEEEEEEeeCCccccccccceeeecccccccCCCCCchHHHHHHcCCCCccEEEEEecCCCCCCCccEEEe
Q 010696 156 KIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIF 235 (503)
Q Consensus 156 ~lg~~~i~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~~G~l~f 235 (503)
++|+..++++.||++....+..+.....+||||||++..+.....+++++|+++|.|.+++||+||.+.. ....|+|+|
T Consensus 80 ~~g~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~-~~~~g~l~f 158 (318)
T cd05477 80 TVQGIIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQAPIFSFYLSGQQ-GQQGGELVF 158 (318)
T ss_pred EECCEEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCcCCCEEEEEEcCCC-CCCCCEEEE
Confidence 9999999999999998866544545667999999998887777789999999999999999999998752 223799999
Q ss_pred CcccCCCcccCeeEEecccccceEEEEeeEEEcCeEeeeccCCceEEEccCccCcccCHHHHHHHHHHhCCccccccccc
Q 010696 236 GGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAEGIVSMQCK 315 (503)
Q Consensus 236 GgiD~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~l~~~~~~~~~c~ 315 (503)
||+|++++.|++.|+|+...++|.|.++++.|+++.+..+..+..++|||||+++++|++++++|++.+++.
T Consensus 159 Gg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~-------- 230 (318)
T cd05477 159 GGVDNNLYTGQIYWTPVTSETYWQIGIQGFQINGQATGWCSQGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQ-------- 230 (318)
T ss_pred cccCHHHcCCceEEEecCCceEEEEEeeEEEECCEEecccCCCceeeECCCCccEECCHHHHHHHHHHhCCc--------
Confidence 999999999999999999999999999999999988765566778999999999999999999999988654
Q ss_pred eeeeecchhhhhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCccccchhhhHHHHHHHHHHhhhh
Q 010696 316 TVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVFWIQMQLKQQK 395 (503)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (503)
T Consensus 231 -------------------------------------------------------------------------------- 230 (318)
T cd05477 231 -------------------------------------------------------------------------------- 230 (318)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhhhhccCCCCCCceEEeCCCCCCCCeEEEEECCEEEEeCcccceEeeccCcceeEEEeeEeccCCCCCC-C
Q 010696 396 TKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQG-P 474 (503)
Q Consensus 396 ~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~~g~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~-~ 474 (503)
....+.|.+||+....+|.|+|+|+|+++.|+|++|+... ...|+++|.....+...+ +
T Consensus 231 ----------------~~~~~~~~~~C~~~~~~p~l~~~f~g~~~~v~~~~y~~~~----~~~C~~~i~~~~~~~~~~~~ 290 (318)
T cd05477 231 ----------------QDQYGQYVVNCNNIQNLPTLTFTINGVSFPLPPSAYILQN----NGYCTVGIEPTYLPSQNGQP 290 (318)
T ss_pred ----------------cccCCCEEEeCCccccCCcEEEEECCEEEEECHHHeEecC----CCeEEEEEEecccCCCCCCc
Confidence 0124668999998888999999999999999999999863 358998887654333222 4
Q ss_pred eEEeCHhhhcceEEEEeCCCCeEEEEec
Q 010696 475 LWVLGDMFLRAYHTVFDFGNLQIGFAEA 502 (503)
Q Consensus 475 ~~ILG~~Fl~~~y~vfD~~~~riGfa~~ 502 (503)
.||||++|||++|++||++++|||||+|
T Consensus 291 ~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 291 LWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred eEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 7999999999999999999999999986
No 10
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=5.3e-60 Score=492.60 Aligned_cols=326 Identities=33% Similarity=0.637 Sum_probs=282.0
Q ss_pred cCCCCceeEeceeccCceEEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCcccccCCcccCCCCcccccc-ceeEEE
Q 010696 62 FNHPKADVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKI-VPCKIH 140 (503)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~Y~~~i~iGtPpQ~~~v~~DTGSs~~wV~~~~C~~~~~C~~~~~y~p~~SsT~~~~-~~~~~~ 140 (503)
+..+....+||.|+.+.+|+++|+||||||+++|++||||+++||+|..|. ...|..++.|||++|+||+.. +.+.+.
T Consensus 122 ~~~~~~~~v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~-~~~C~~~~~yd~s~SsT~~~~~~~f~i~ 200 (453)
T PTZ00147 122 YLGSEFDNVELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCT-TEGCETKNLYDSSKSKTYEKDGTKVEMN 200 (453)
T ss_pred cccCCCCeeeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCC-cccccCCCccCCccCcceEECCCEEEEE
Confidence 334577899999999999999999999999999999999999999999997 568999999999999999988 999999
Q ss_pred eeceeEEEEEEEEEEEECCeEeeeeEEEEEEeeCCc--cccccccceeeecccccccCCCCCchHHHHHHcCCCCccEEE
Q 010696 141 YGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLL--PFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFS 218 (503)
Q Consensus 141 Yg~gs~~G~~~~D~v~lg~~~i~~~~Fg~~~~~~~~--~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS 218 (503)
|++|++.|.+++|+|++|+.+++ ..|+++....+. .+....+|||||||++..+.....|++.+|++||+|++++||
T Consensus 201 Yg~GsvsG~~~~DtVtiG~~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~~L~~qg~I~~~vFS 279 (453)
T PTZ00147 201 YVSGTVSGFFSKDLVTIGNLSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVVELKNQNKIEQAVFT 279 (453)
T ss_pred eCCCCEEEEEEEEEEEECCEEEE-EEEEEEEeccCcccccccccccceecccCCccccccCCCHHHHHHHcCCCCccEEE
Confidence 99999999999999999999998 468888765442 234457899999999988777788999999999999999999
Q ss_pred EEecCCCCCCCccEEEeCcccCCCcccCeeEEecccccceEEEEeeEEEcCeEeeeccCCceEEEccCccCcccCHHHHH
Q 010696 219 LWLNQDPNSEVGGEIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVA 298 (503)
Q Consensus 219 l~l~~~~~~~~~G~l~fGgiD~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~ 298 (503)
+||++.+. ..|.|+|||+|+++|.|++.|+|+.+..+|.|.++ +.+++.. .....++|||||+++++|+++++
T Consensus 280 ~~L~~~~~--~~G~L~fGGiD~~ky~G~l~y~pl~~~~~W~V~l~-~~vg~~~----~~~~~aIiDSGTsli~lP~~~~~ 352 (453)
T PTZ00147 280 FYLPPEDK--HKGYLTIGGIEERFYEGPLTYEKLNHDLYWQVDLD-VHFGNVS----SEKANVIVDSGTSVITVPTEFLN 352 (453)
T ss_pred EEecCCCC--CCeEEEECCcChhhcCCceEEEEcCCCceEEEEEE-EEECCEe----cCceeEEECCCCchhcCCHHHHH
Confidence 99987432 37999999999999999999999998899999998 4776643 24678999999999999999999
Q ss_pred HHHHHhCCccccccccceeeeecchhhhhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCccccch
Q 010696 299 QINHAIGAEGIVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCA 378 (503)
Q Consensus 299 ~l~~~l~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (503)
++.+++++..
T Consensus 353 ai~~~l~~~~---------------------------------------------------------------------- 362 (453)
T PTZ00147 353 KFVESLDVFK---------------------------------------------------------------------- 362 (453)
T ss_pred HHHHHhCCee----------------------------------------------------------------------
Confidence 9999886440
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHhhhhccCCCCCCceEEeCCCCCCCCeEEEEECCEEEEeCcccceEeeccCccee
Q 010696 379 FCEMIVFWIQMQLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTI 458 (503)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~~g~~~~l~p~~yi~~~~~~~~~~ 458 (503)
. ...+.|.++|+. ..+|+|+|.|+|..++|+|++|+.+..+.....
T Consensus 363 --------------------------------~-~~~~~y~~~C~~-~~lP~~~f~f~g~~~~L~p~~yi~~~~~~~~~~ 408 (453)
T PTZ00147 363 --------------------------------V-PFLPLYVTTCNN-TKLPTLEFRSPNKVYTLEPEYYLQPIEDIGSAL 408 (453)
T ss_pred --------------------------------c-CCCCeEEEeCCC-CCCCeEEEEECCEEEEECHHHheeccccCCCcE
Confidence 0 113457889996 579999999999999999999998655445568
Q ss_pred EEEeeEeccCCCCCCCeEEeCHhhhcceEEEEeCCCCeEEEEecC
Q 010696 459 CISGFIALDVPPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEAA 503 (503)
Q Consensus 459 C~~~~~~~~~~~~~~~~~ILG~~Fl~~~y~vfD~~~~riGfa~~~ 503 (503)
|+++|...+. ..+.||||++|||++|+|||++++|||||+++
T Consensus 409 C~~~i~~~~~---~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 409 CMLNIIPIDL---EKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred EEEEEEECCC---CCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 9998886542 23579999999999999999999999999985
No 11
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=2.4e-59 Score=486.78 Aligned_cols=326 Identities=31% Similarity=0.638 Sum_probs=279.9
Q ss_pred cCCCCceeEeceeccCceEEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCcccccCCcccCCCCcccccc-ceeEEE
Q 010696 62 FNHPKADVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKI-VPCKIH 140 (503)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~Y~~~i~iGtPpQ~~~v~~DTGSs~~wV~~~~C~~~~~C~~~~~y~p~~SsT~~~~-~~~~~~ 140 (503)
+..+....++|.|+.+.+|+++|+||||||+++|+|||||+++||++..|. ...|..++.|||++|+|++.. +.+.+.
T Consensus 121 ~~~~~~~~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~-~~~C~~~~~yd~s~SsT~~~~~~~~~i~ 199 (450)
T PTZ00013 121 YLGSENDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCD-SIGCSIKNLYDSSKSKSYEKDGTKVDIT 199 (450)
T ss_pred ccccCCCceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCC-ccccccCCCccCccCcccccCCcEEEEE
Confidence 445678889999999999999999999999999999999999999999997 568999999999999999998 999999
Q ss_pred eeceeEEEEEEEEEEEECCeEeeeeEEEEEEeeCC--ccccccccceeeecccccccCCCCCchHHHHHHcCCCCccEEE
Q 010696 141 YGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGL--LPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFS 218 (503)
Q Consensus 141 Yg~gs~~G~~~~D~v~lg~~~i~~~~Fg~~~~~~~--~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS 218 (503)
|++|++.|.+++|+|++|+.+++ ..|+++..... ..+....+|||||||++..+.....|++++|++||+|++++||
T Consensus 200 YG~Gsv~G~~~~Dtv~iG~~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~~~~L~~qg~I~~~vFS 278 (450)
T PTZ00013 200 YGSGTVKGFFSKDLVTLGHLSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFT 278 (450)
T ss_pred ECCceEEEEEEEEEEEECCEEEc-cEEEEEEeccccccceecccccceecccCCccccccCCCHHHHHHhccCcCCcEEE
Confidence 99999999999999999999987 57887765432 2244557899999999988776788999999999999999999
Q ss_pred EEecCCCCCCCccEEEeCcccCCCcccCeeEEecccccceEEEEeeEEEcCeEeeeccCCceEEEccCccCcccCHHHHH
Q 010696 219 LWLNQDPNSEVGGEIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVA 298 (503)
Q Consensus 219 l~l~~~~~~~~~G~l~fGgiD~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~ 298 (503)
+||++.+ ...|+|+|||+|+++|.|++.|+|+.+..+|.|.++ +.++.... ....+++||||+++++|+++++
T Consensus 279 ~~L~~~~--~~~G~L~fGGiD~~~y~G~L~y~pv~~~~yW~I~l~-v~~G~~~~----~~~~aIlDSGTSli~lP~~~~~ 351 (450)
T PTZ00013 279 FYLPVHD--VHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLD-VHFGKQTM----QKANVIVDSGTTTITAPSEFLN 351 (450)
T ss_pred EEecCCC--CCCCEEEECCcCccccccceEEEEcCcCceEEEEEE-EEECceec----cccceEECCCCccccCCHHHHH
Confidence 9998643 237999999999999999999999998899999998 66654332 4567999999999999999999
Q ss_pred HHHHHhCCccccccccceeeeecchhhhhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCccccch
Q 010696 299 QINHAIGAEGIVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCA 378 (503)
Q Consensus 299 ~l~~~l~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (503)
++.+++++..
T Consensus 352 ~i~~~l~~~~---------------------------------------------------------------------- 361 (450)
T PTZ00013 352 KFFANLNVIK---------------------------------------------------------------------- 361 (450)
T ss_pred HHHHHhCCee----------------------------------------------------------------------
Confidence 9998886541
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHhhhhccCCCCCCceEEeCCCCCCCCeEEEEECCEEEEeCcccceEeeccCccee
Q 010696 379 FCEMIVFWIQMQLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTI 458 (503)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~~g~~~~l~p~~yi~~~~~~~~~~ 458 (503)
....+.|.++|+. ..+|+|+|.|+|.+++|+|++|+.+..+.....
T Consensus 362 ---------------------------------~~~~~~y~~~C~~-~~lP~i~F~~~g~~~~L~p~~Yi~~~~~~~~~~ 407 (450)
T PTZ00013 362 ---------------------------------VPFLPFYVTTCDN-KEMPTLEFKSANNTYTLEPEYYMNPLLDVDDTL 407 (450)
T ss_pred ---------------------------------cCCCCeEEeecCC-CCCCeEEEEECCEEEEECHHHheehhccCCCCe
Confidence 0123458889985 578999999999999999999997644333468
Q ss_pred EEEeeEeccCCCCCCCeEEeCHhhhcceEEEEeCCCCeEEEEecC
Q 010696 459 CISGFIALDVPPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEAA 503 (503)
Q Consensus 459 C~~~~~~~~~~~~~~~~~ILG~~Fl~~~y~vfD~~~~riGfa~~~ 503 (503)
|++++...+. ..+.||||++|||++|+|||++++|||||+++
T Consensus 408 C~~~i~~~~~---~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 408 CMITMLPVDI---DDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred eEEEEEECCC---CCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 9998876542 23579999999999999999999999999985
No 12
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=4e-56 Score=448.78 Aligned_cols=315 Identities=39% Similarity=0.732 Sum_probs=279.8
Q ss_pred eEEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCcccccCCcccCCCCcccccc-ceeEEEeeceeEEEEEEEEEEEE
Q 010696 79 QYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKI-VPCKIHYGSGQISGFFSQDNVKI 157 (503)
Q Consensus 79 ~Y~~~i~iGtPpQ~~~v~~DTGSs~~wV~~~~C~~~~~C~~~~~y~p~~SsT~~~~-~~~~~~Yg~gs~~G~~~~D~v~l 157 (503)
+|+++|+||||||+++|++||||+++||++..|..+..|..+..|++.+|+|++.. +.+.+.|++|+++|.+++|+|+|
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~~~~~~~y~~g~~~G~~~~D~v~i 80 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQGKPFSISYGDGSVSGNLVSDTVSI 80 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccceeeeeeeccCcccccccccceEee
Confidence 59999999999999999999999999999999973336788899999999999998 88999999999999999999999
Q ss_pred CCeEeeeeEEEEEEeeCCccccccccceeeecccccccCCC-CCchHHHHHHcCCCCccEEEEEecCCCCCCCccEEEeC
Q 010696 158 GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGN-ATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFG 236 (503)
Q Consensus 158 g~~~i~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~-~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~~G~l~fG 236 (503)
++..+.++.||++....+..+....++||||||++..+... ..+++++|+++|+|.+++||++|++.. ...|.|+||
T Consensus 81 g~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~~~~fsl~l~~~~--~~~g~l~~G 158 (317)
T PF00026_consen 81 GGLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLISSNVFSLYLNPSD--SQNGSLTFG 158 (317)
T ss_dssp TTEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSSSSEEEEEEESTT--SSEEEEEES
T ss_pred eeccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhccccccccceeeeecc--cccchheee
Confidence 99999999999999976655667888999999988766554 788999999999999999999999874 347999999
Q ss_pred cccCCCcccCeeEEecccccceEEEEeeEEEcCeEeeeccCCceEEEccCccCcccCHHHHHHHHHHhCCccccccccce
Q 010696 237 GFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAEGIVSMQCKT 316 (503)
Q Consensus 237 giD~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~l~~~~~~~~~c~~ 316 (503)
|+|+++++|+++|+|+...++|.+.+++|.+++... ....+..++||||++++++|.+++++|++++++..
T Consensus 159 g~d~~~~~g~~~~~~~~~~~~w~v~~~~i~i~~~~~-~~~~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~-------- 229 (317)
T PF00026_consen 159 GYDPSKYDGDLVWVPLVSSGYWSVPLDSISIGGESV-FSSSGQQAILDTGTSYIYLPRSIFDAIIKALGGSY-------- 229 (317)
T ss_dssp SEEGGGEESEEEEEEBSSTTTTEEEEEEEEETTEEE-EEEEEEEEEEETTBSSEEEEHHHHHHHHHHHTTEE--------
T ss_pred ccccccccCceeccCccccccccccccccccccccc-ccccceeeecccccccccccchhhHHHHhhhcccc--------
Confidence 999999999999999999999999999999999832 24556789999999999999999999999997661
Q ss_pred eeeecchhhhhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCccccchhhhHHHHHHHHHHhhhhh
Q 010696 317 VVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVFWIQMQLKQQKT 396 (503)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (503)
T Consensus 230 -------------------------------------------------------------------------------- 229 (317)
T PF00026_consen 230 -------------------------------------------------------------------------------- 229 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhhhccCCCCCCceEEeCCCCCCCCeEEEEECCEEEEeCcccceEeeccCcceeEEEeeEeccCCCCCCCeE
Q 010696 397 KEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPLW 476 (503)
Q Consensus 397 ~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~~g~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ 476 (503)
..+.|.+||+....+|.|+|.|++.+++|+|++|+.+..+.....|+..|...+. ....+.|
T Consensus 230 -----------------~~~~~~~~c~~~~~~p~l~f~~~~~~~~i~~~~~~~~~~~~~~~~C~~~i~~~~~-~~~~~~~ 291 (317)
T PF00026_consen 230 -----------------SDGVYSVPCNSTDSLPDLTFTFGGVTFTIPPSDYIFKIEDGNGGYCYLGIQPMDS-SDDSDDW 291 (317)
T ss_dssp -----------------ECSEEEEETTGGGGSEEEEEEETTEEEEEEHHHHEEEESSTTSSEEEESEEEESS-TTSSSEE
T ss_pred -----------------cceeEEEecccccccceEEEeeCCEEEEecchHhcccccccccceeEeeeecccc-cccCCce
Confidence 0156899999888899999999999999999999998877655699999998654 3455789
Q ss_pred EeCHhhhcceEEEEeCCCCeEEEEec
Q 010696 477 VLGDMFLRAYHTVFDFGNLQIGFAEA 502 (503)
Q Consensus 477 ILG~~Fl~~~y~vfD~~~~riGfa~~ 502 (503)
|||.+|||++|++||++++|||||+|
T Consensus 292 iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 292 ILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp EEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred EecHHHhhceEEEEeCCCCEEEEecC
Confidence 99999999999999999999999997
No 13
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=6.3e-53 Score=418.18 Aligned_cols=271 Identities=29% Similarity=0.496 Sum_probs=235.8
Q ss_pred EEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCcccccCCcccCCCCcccccc--ceeEEEeecee-EEEEEEEEEEE
Q 010696 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKI--VPCKIHYGSGQ-ISGFFSQDNVK 156 (503)
Q Consensus 80 Y~~~i~iGtPpQ~~~v~~DTGSs~~wV~~~~C~~~~~C~~~~~y~p~~SsT~~~~--~~~~~~Yg~gs-~~G~~~~D~v~ 156 (503)
|+++|+||||||++.|++||||+++||++..|. ...|..+..|++++|+|++.. +.+.+.|++|+ +.|.+++|+|+
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~-~~~~~~~~~y~~~~Sst~~~~~~~~~~i~Y~~G~~~~G~~~~D~v~ 79 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETP-AAQQGGHKLYDPSKSSTAKLLPGATWSISYGDGSSASGIVYTDTVS 79 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCC-chhhccCCcCCCccCccceecCCcEEEEEeCCCCeEEEEEEEEEEE
Confidence 789999999999999999999999999999997 334556778999999999875 89999999997 89999999999
Q ss_pred ECCeEeeeeEEEEEEeeCCccccccccceeeecccccccCC---CCCchHHHHHHcCCCCccEEEEEecCCCCCCCccEE
Q 010696 157 IGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAG---NATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEI 233 (503)
Q Consensus 157 lg~~~i~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~---~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~~G~l 233 (503)
+|+.+++++.||+++...+..+....++||||||++..+.. ...+++++|++++. +++||+||.+. ..|+|
T Consensus 80 ig~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~--~~~Fs~~l~~~----~~G~l 153 (278)
T cd06097 80 IGGVEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLD--APLFTADLRKA----APGFY 153 (278)
T ss_pred ECCEEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhcc--CceEEEEecCC----CCcEE
Confidence 99999999999999887654455678899999999876542 35678999999975 79999999863 27999
Q ss_pred EeCcccCCCcccCeeEEeccc-ccceEEEEeeEEEcCeEeeeccCCceEEEccCccCcccCHHHHHHHHHHhCCcccccc
Q 010696 234 IFGGFDWRHFRGSHIYVPITE-KGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAEGIVSM 312 (503)
Q Consensus 234 ~fGgiD~~~~~g~l~~~p~~~-~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~l~~~~~~~~ 312 (503)
+|||+|++++.|+++|+|+.. .++|.|+++++.|+++... ...+..++|||||+++++|.+++++|.+++.+..
T Consensus 154 ~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~-~~~~~~~iiDSGTs~~~lP~~~~~~l~~~l~g~~---- 228 (278)
T cd06097 154 TFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPW-SRSGFSAIADTGTTLILLPDAIVEAYYSQVPGAY---- 228 (278)
T ss_pred EEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCccee-ecCCceEEeecCCchhcCCHHHHHHHHHhCcCCc----
Confidence 999999999999999999986 7899999999999998432 3567889999999999999999999999884320
Q ss_pred ccceeeeecchhhhhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCccccchhhhHHHHHHHHHHh
Q 010696 313 QCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVFWIQMQLK 392 (503)
Q Consensus 313 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (503)
T Consensus 229 -------------------------------------------------------------------------------- 228 (278)
T cd06097 229 -------------------------------------------------------------------------------- 228 (278)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhHHHHHHHHhhhhccCCCCCCceEEeCCCCCCCCeEEEEECCEEEEeCcccceEeeccCcceeEEEeeEeccCCCCC
Q 010696 393 QQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQ 472 (503)
Q Consensus 393 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~~g~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~ 472 (503)
.....+.|.+||+. .+|+|+|+|
T Consensus 229 ------------------~~~~~~~~~~~C~~--~~P~i~f~~------------------------------------- 251 (278)
T cd06097 229 ------------------YDSEYGGWVFPCDT--TLPDLSFAV------------------------------------- 251 (278)
T ss_pred ------------------ccCCCCEEEEECCC--CCCCEEEEE-------------------------------------
Confidence 01235679999996 399999999
Q ss_pred CCeEEeCHhhhcceEEEEeCCCCeEEEEe
Q 010696 473 GPLWVLGDMFLRAYHTVFDFGNLQIGFAE 501 (503)
Q Consensus 473 ~~~~ILG~~Fl~~~y~vfD~~~~riGfa~ 501 (503)
.||||++|||++|+|||++|+|||||+
T Consensus 252 --~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 --FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred --EEEEcchhhCceeEEEcCCCceeeecC
Confidence 589999999999999999999999996
No 14
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=2.4e-51 Score=421.92 Aligned_cols=315 Identities=27% Similarity=0.466 Sum_probs=246.1
Q ss_pred ceEEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCcccccCCcccCCCCcccccc-ceeEEEeeceeEEEEEEEEEEE
Q 010696 78 AQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKI-VPCKIHYGSGQISGFFSQDNVK 156 (503)
Q Consensus 78 ~~Y~~~i~iGtPpQ~~~v~~DTGSs~~wV~~~~C~~~~~C~~~~~y~p~~SsT~~~~-~~~~~~Yg~gs~~G~~~~D~v~ 156 (503)
..|+++|.||||||+|.|+|||||+++||+|..|. ..++.|+|++|+||+.. +.+.+.|++|++.|.+++|+|+
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~-----~~~~~f~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~D~v~ 76 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHP-----FIHTYFHRELSSTYRDLGKGVTVPYTQGSWEGELGTDLVS 76 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCc-----cccccCCchhCcCcccCCceEEEEECcceEEEEEEEEEEE
Confidence 47999999999999999999999999999998773 34678999999999999 9999999999999999999999
Q ss_pred ECCeEeeeeE----EEEEEeeCCccccccccceeeecccccccC--CCCCchHHHHHHcCCCCccEEEEEecCCC-----
Q 010696 157 IGDMIIKDQE----FVEVTKEGLLPFLALQFDGILGLGFRDIAA--GNATPLWYNMVRQGHISQKIFSLWLNQDP----- 225 (503)
Q Consensus 157 lg~~~i~~~~----Fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~--~~~~~~~~~l~~qg~i~~~~FSl~l~~~~----- 225 (503)
|++. .++. |+++....+.......+|||||||++.++. ....|++++|++|+.+ .++||+||+...
T Consensus 77 ig~~--~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~-~~~FS~~l~~~~~~~~~ 153 (364)
T cd05473 77 IPKG--PNVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGI-PDVFSLQMCGAGLPVNG 153 (364)
T ss_pred ECCC--CccceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCC-ccceEEEeccccccccc
Confidence 9863 2233 344443332212234679999999987764 2467899999999987 579999986421
Q ss_pred --CCCCccEEEeCcccCCCcccCeeEEecccccceEEEEeeEEEcCeEeeeccC---CceEEEccCccCcccCHHHHHHH
Q 010696 226 --NSEVGGEIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCED---GCTAILDSGTSVLAGPTTVVAQI 300 (503)
Q Consensus 226 --~~~~~G~l~fGgiD~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~---~~~aiiDTGTt~i~lP~~~~~~l 300 (503)
.....|.|+|||+|++++.|++.|+|+....+|.|.+++|.|+++.+..... ...+||||||+++++|++++++|
T Consensus 154 ~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTs~~~lp~~~~~~l 233 (364)
T cd05473 154 SASGTVGGSMVIGGIDPSLYKGDIWYTPIREEWYYEVIILKLEVGGQSLNLDCKEYNYDKAIVDSGTTNLRLPVKVFNAA 233 (364)
T ss_pred ccccCCCcEEEeCCcCHhhcCCCceEEecCcceeEEEEEEEEEECCEecccccccccCccEEEeCCCcceeCCHHHHHHH
Confidence 1224799999999999999999999999889999999999999987753221 24699999999999999999999
Q ss_pred HHHhCCccccccccceeeeecchhhhhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCccccchhh
Q 010696 301 NHAIGAEGIVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFC 380 (503)
Q Consensus 301 ~~~l~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (503)
.+++++... ..
T Consensus 234 ~~~l~~~~~--------------------~~------------------------------------------------- 244 (364)
T cd05473 234 VDAIKAASL--------------------IE------------------------------------------------- 244 (364)
T ss_pred HHHHHhhcc--------------------cc-------------------------------------------------
Confidence 999876510 00
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHhhhhccCCCC-CCceEEeCCCCC-----CCCeEEEEECC------EEEEeCcccce
Q 010696 381 EMIVFWIQMQLKQQKTKEAIFKYADKLCEVLPNP-MGKSFINCDDIA-----SMPYVSFTIGN------RSFPLSPEQYI 448 (503)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~-~~~~~~~C~~~~-----~~P~i~f~~~g------~~~~l~p~~yi 448 (503)
..+.. .+.+.++|.... .+|+|+|+|+| .++.|+|++|+
T Consensus 245 -----------------------------~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~~l~l~p~~Y~ 295 (364)
T cd05473 245 -----------------------------DFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQSFRITILPQLYL 295 (364)
T ss_pred -----------------------------cCCccccCcceeecccccCchHhhCCcEEEEEccCCCCceEEEEECHHHhh
Confidence 00000 122356786543 58999999964 47899999999
Q ss_pred Eeecc-CcceeEEEeeEeccCCCCCCCeEEeCHhhhcceEEEEeCCCCeEEEEecC
Q 010696 449 FKIEE-GHSTICISGFIALDVPPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEAA 503 (503)
Q Consensus 449 ~~~~~-~~~~~C~~~~~~~~~~~~~~~~~ILG~~Fl~~~y~vfD~~~~riGfa~~~ 503 (503)
..... .....|+. +... ...+.||||+.|||++|+|||++++|||||+++
T Consensus 296 ~~~~~~~~~~~C~~-~~~~----~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~ 346 (364)
T cd05473 296 RPVEDHGTQLDCYK-FAIS----QSTNGTVIGAVIMEGFYVVFDRANKRVGFAVST 346 (364)
T ss_pred hhhccCCCcceeeE-Eeee----cCCCceEEeeeeEcceEEEEECCCCEEeeEecc
Confidence 86432 23457985 2111 123479999999999999999999999999874
No 15
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-50 Score=420.56 Aligned_cols=320 Identities=38% Similarity=0.745 Sum_probs=265.1
Q ss_pred ceeEeceeccCceEEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCccccc-CCc-ccCCCCcccccc--ce------
Q 010696 67 ADVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYL-HSR-YRARLSRTYTKI--VP------ 136 (503)
Q Consensus 67 ~~~~~l~~~~~~~Y~~~i~iGtPpQ~~~v~~DTGSs~~wV~~~~C~~~~~C~~-~~~-y~p~~SsT~~~~--~~------ 136 (503)
....++..+.+++|+++|.||||||+|.|++||||+++||+|..|.. .|.. +.. |+|++|+||+.. ..
T Consensus 34 ~~~~~~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~--~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~ 111 (398)
T KOG1339|consen 34 PLPESLSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSS--ACYSQHNPIFDPSASSTYKSVGCSSPRCKSL 111 (398)
T ss_pred ccccccccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccc--cccccCCCccCccccccccccCCCCcccccc
Confidence 34456677778899999999999999999999999999999999962 6874 444 999999999987 33
Q ss_pred -----------eEEEeece-eEEEEEEEEEEEECC---eEeeeeEEEEEEeeCCccccc-cccceeeecccccccCCCCC
Q 010696 137 -----------CKIHYGSG-QISGFFSQDNVKIGD---MIIKDQEFVEVTKEGLLPFLA-LQFDGILGLGFRDIAAGNAT 200 (503)
Q Consensus 137 -----------~~~~Yg~g-s~~G~~~~D~v~lg~---~~i~~~~Fg~~~~~~~~~~~~-~~~dGIlGLg~~~~s~~~~~ 200 (503)
|.+.|++| ++.|.+++|+|++++ ..++++.|||+....+. +.. .++|||||||+...+...+.
T Consensus 112 ~~~~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~-~~~~~~~dGIlGLg~~~~S~~~q~ 190 (398)
T KOG1339|consen 112 PQSCSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGS-FGLFAAFDGILGLGRGSLSVPSQL 190 (398)
T ss_pred ccCcccCCcCceEEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCccc-cccccccceEeecCCCCccceeec
Confidence 99999995 589999999999998 78888999999998765 444 67899999999988865554
Q ss_pred chHHHHHHcCCCCccEEEEEecCCCCC-CCccEEEeCcccCCCcccCeeEEeccccc--ceEEEEeeEEEcCeE----ee
Q 010696 201 PLWYNMVRQGHISQKIFSLWLNQDPNS-EVGGEIIFGGFDWRHFRGSHIYVPITEKG--YWQIKVGDILIENSS----TG 273 (503)
Q Consensus 201 ~~~~~l~~qg~i~~~~FSl~l~~~~~~-~~~G~l~fGgiD~~~~~g~l~~~p~~~~~--~w~v~l~~i~v~~~~----~~ 273 (503)
+.+.++. ++||+||.+.... ..+|.|+||++|+.++.+.+.|+|+.... +|.+.+++|.|+++. ..
T Consensus 191 ~~~~~~~-------~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~~~~~~~ 263 (398)
T KOG1339|consen 191 PSFYNAI-------NVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKRPIGSSL 263 (398)
T ss_pred ccccCCc-------eeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCccCCCcce
Confidence 4332222 3899999987433 25899999999999999999999998877 999999999999842 22
Q ss_pred eccCCceEEEccCccCcccCHHHHHHHHHHhCCccccccccceeeeecchhhhhhhhcCCCCCcccccCcceeeCCCccc
Q 010696 274 FCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAEGIVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYM 353 (503)
Q Consensus 274 ~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~l~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 353 (503)
++.+...+|+||||++++||.++|++|.+++++.- +
T Consensus 264 ~~~~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~--------------~------------------------------ 299 (398)
T KOG1339|consen 264 FCTDGGGAIIDSGTSLTYLPTSAYNALREAIGAEV--------------S------------------------------ 299 (398)
T ss_pred EecCCCCEEEECCcceeeccHHHHHHHHHHHHhhe--------------e------------------------------
Confidence 33346889999999999999999999999997650 0
Q ss_pred ccceeeeeecccCCCCCCCccccchhhhHHHHHHHHHHhhhhhHHHHHHHHhhhhccCCCCCCceEEeCCCCCC----CC
Q 010696 354 STGIETVVQHKTSNGSSINESTLCAFCEMIVFWIQMQLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIAS----MP 429 (503)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~----~P 429 (503)
.+...+.+.++|..... +|
T Consensus 300 ---------------------------------------------------------~~~~~~~~~~~C~~~~~~~~~~P 322 (398)
T KOG1339|consen 300 ---------------------------------------------------------VVGTDGEYFVPCFSISTSGVKLP 322 (398)
T ss_pred ---------------------------------------------------------ccccCCceeeecccCCCCcccCC
Confidence 01235667888987776 99
Q ss_pred eEEEEEC-CEEEEeCcccceEeeccCcceeEEEeeEeccCCCCCCCeEEeCHhhhcceEEEEeCC-CCeEEEEec
Q 010696 430 YVSFTIG-NRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPLWVLGDMFLRAYHTVFDFG-NLQIGFAEA 502 (503)
Q Consensus 430 ~i~f~~~-g~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILG~~Fl~~~y~vfD~~-~~riGfa~~ 502 (503)
.|+|+|+ |+.|.+++++|++...+.... |.+.+...+.+ +.||||+.|+|+++++||.. ++|||||++
T Consensus 323 ~i~~~f~~g~~~~l~~~~y~~~~~~~~~~-Cl~~~~~~~~~----~~~ilG~~~~~~~~~~~D~~~~~riGfa~~ 392 (398)
T KOG1339|consen 323 DITFHFGGGAVFSLPPKNYLVEVSDGGGV-CLAFFNGMDSG----PLWILGDVFQQNYLVVFDLGENSRVGFAPA 392 (398)
T ss_pred cEEEEECCCcEEEeCccceEEEECCCCCc-eeeEEecCCCC----ceEEEchHHhCCEEEEEeCCCCCEEEeccc
Confidence 9999998 899999999999987654322 99988754421 68999999999999999999 999999985
No 16
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=3.4e-50 Score=407.36 Aligned_cols=281 Identities=30% Similarity=0.480 Sum_probs=234.3
Q ss_pred ceEEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCccccc--CCcccCCCCccccc----------------c-ceeE
Q 010696 78 AQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYL--HSRYRARLSRTYTK----------------I-VPCK 138 (503)
Q Consensus 78 ~~Y~~~i~iGtPpQ~~~v~~DTGSs~~wV~~~~C~~~~~C~~--~~~y~p~~SsT~~~----------------~-~~~~ 138 (503)
+.|+++|+||||||++.|+|||||+++||+|..|. .|.. ++.|+|++|+|++. . +.+.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~---~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~~~~~~~~~~~~~ 78 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCK---NCGIHMEPPYNLNNSITSSILYCDCNKCCYCLSCLNNKCEYS 78 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCC---CcCCCCCCCcCcccccccccccCCCccccccCcCCCCcCcEE
Confidence 47999999999999999999999999999999997 5653 47899999999975 2 6899
Q ss_pred EEeecee-EEEEEEEEEEEECCeEee-------eeEEEEEEeeCCccccccccceeeecccccccCCCCCchHHHHHHcC
Q 010696 139 IHYGSGQ-ISGFFSQDNVKIGDMIIK-------DQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQG 210 (503)
Q Consensus 139 ~~Yg~gs-~~G~~~~D~v~lg~~~i~-------~~~Fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg 210 (503)
+.|++|+ +.|.+++|+|+||+..+. ++.|||+....+ .|.....+||||||+...+. ..+.+..|++++
T Consensus 79 i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~--~~~~~~~l~~~~ 155 (326)
T cd06096 79 ISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETN-LFLTQQATGILGLSLTKNNG--LPTPIILLFTKR 155 (326)
T ss_pred EEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccC-cccccccceEEEccCCcccc--cCchhHHHHHhc
Confidence 9999997 799999999999986653 467999987654 34556789999999986542 223445577777
Q ss_pred CCCc--cEEEEEecCCCCCCCccEEEeCcccCCCcc----------cCeeEEecccccceEEEEeeEEEcCeE-eeeccC
Q 010696 211 HISQ--KIFSLWLNQDPNSEVGGEIIFGGFDWRHFR----------GSHIYVPITEKGYWQIKVGDILIENSS-TGFCED 277 (503)
Q Consensus 211 ~i~~--~~FSl~l~~~~~~~~~G~l~fGgiD~~~~~----------g~l~~~p~~~~~~w~v~l~~i~v~~~~-~~~~~~ 277 (503)
.+.. ++||+||++. .|.|+|||+|++++. +++.|+|+..+.+|.|.+++|+++++. ......
T Consensus 156 ~~~~~~~~FS~~l~~~-----~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~~~y~v~l~~i~vg~~~~~~~~~~ 230 (326)
T cd06096 156 PKLKKDKIFSICLSED-----GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRKYYYYVKLEGLSVYGTTSNSGNTK 230 (326)
T ss_pred ccccCCceEEEEEcCC-----CeEEEECccChhhhcccccccccccCCceEEeccCCceEEEEEEEEEEcccccceeccc
Confidence 7654 9999999864 799999999999987 789999999889999999999999886 112346
Q ss_pred CceEEEccCccCcccCHHHHHHHHHHhCCccccccccceeeeecchhhhhhhhcCCCCCcccccCcceeeCCCcccccce
Q 010696 278 GCTAILDSGTSVLAGPTTVVAQINHAIGAEGIVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGI 357 (503)
Q Consensus 278 ~~~aiiDTGTt~i~lP~~~~~~l~~~l~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 357 (503)
...++|||||++++||++++++|.++
T Consensus 231 ~~~aivDSGTs~~~lp~~~~~~l~~~------------------------------------------------------ 256 (326)
T cd06096 231 GLGMLVDSGSTLSHFPEDLYNKINNF------------------------------------------------------ 256 (326)
T ss_pred CCCEEEeCCCCcccCCHHHHHHHHhh------------------------------------------------------
Confidence 77899999999999999999877431
Q ss_pred eeeeecccCCCCCCCccccchhhhHHHHHHHHHHhhhhhHHHHHHHHhhhhccCCCCCCceEEeCCCCCCCCeEEEEEC-
Q 010696 358 ETVVQHKTSNGSSINESTLCAFCEMIVFWIQMQLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIG- 436 (503)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~~- 436 (503)
+|+|+|.|+
T Consensus 257 ----------------------------------------------------------------------~P~i~~~f~~ 266 (326)
T cd06096 257 ----------------------------------------------------------------------FPTITIIFEN 266 (326)
T ss_pred ----------------------------------------------------------------------cCcEEEEEcC
Confidence 289999998
Q ss_pred CEEEEeCcccceEeeccCcceeEEEeeEeccCCCCCCCeEEeCHhhhcceEEEEeCCCCeEEEEec
Q 010696 437 NRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEA 502 (503)
Q Consensus 437 g~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILG~~Fl~~~y~vfD~~~~riGfa~~ 502 (503)
|++++++|++|++...+. .|...+.. ..+.||||++|||++|+|||++++|||||++
T Consensus 267 g~~~~i~p~~y~~~~~~~---~c~~~~~~------~~~~~ILG~~flr~~y~vFD~~~~riGfa~~ 323 (326)
T cd06096 267 NLKIDWKPSSYLYKKESF---WCKGGEKS------VSNKPILGASFFKNKQIIFDLDNNRIGFVES 323 (326)
T ss_pred CcEEEECHHHhccccCCc---eEEEEEec------CCCceEEChHHhcCcEEEEECcCCEEeeEcC
Confidence 899999999999875433 36655542 2257999999999999999999999999986
No 17
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=2.1e-49 Score=396.19 Aligned_cols=278 Identities=30% Similarity=0.540 Sum_probs=239.7
Q ss_pred eEEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCcccccCCcccCCCCccccccceeEEEeece-eEEEEEEEEEEEE
Q 010696 79 QYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVPCKIHYGSG-QISGFFSQDNVKI 157 (503)
Q Consensus 79 ~Y~~~i~iGtPpQ~~~v~~DTGSs~~wV~~~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~Yg~g-s~~G~~~~D~v~l 157 (503)
.|+++|.||||||++.|++||||+++||+ .+.+.|++| ++.|.+++|+|++
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~----------------------------~~~~~Y~~g~~~~G~~~~D~v~~ 53 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP----------------------------DFSISYGDGTSASGTWGTDTVSI 53 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee----------------------------eeEEEeccCCcEEEEEEEEEEEE
Confidence 69999999999999999999999999997 467899995 5899999999999
Q ss_pred CCeEeeeeEEEEEEeeCCccccccccceeeecccccccC-----CCCCchHHHHHHcCCCCccEEEEEecCCCCCCCccE
Q 010696 158 GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA-----GNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGE 232 (503)
Q Consensus 158 g~~~i~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~-----~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~~G~ 232 (503)
++..++++.||++.... ..+||||||+...+. ...++++++|++||+|.+++||+||.+.+ ...|.
T Consensus 54 g~~~~~~~~fg~~~~~~-------~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~i~~~~Fsl~l~~~~--~~~g~ 124 (295)
T cd05474 54 GGATVKNLQFAVANSTS-------SDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGLIKKNAYSLYLNDLD--ASTGS 124 (295)
T ss_pred CCeEecceEEEEEecCC-------CCcceeeECCCCCcccccCCCcCCCHHHHHHHCCcccceEEEEEeCCCC--CCcee
Confidence 99999999999998732 358999999987643 23567999999999999999999998753 23799
Q ss_pred EEeCcccCCCcccCeeEEecccc------cceEEEEeeEEEcCeEee--eccCCceEEEccCccCcccCHHHHHHHHHHh
Q 010696 233 IIFGGFDWRHFRGSHIYVPITEK------GYWQIKVGDILIENSSTG--FCEDGCTAILDSGTSVLAGPTTVVAQINHAI 304 (503)
Q Consensus 233 l~fGgiD~~~~~g~l~~~p~~~~------~~w~v~l~~i~v~~~~~~--~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~l 304 (503)
|+|||+|++++.|++.|+|+... .+|.|.+++|++++.... .......++|||||+++++|.+++++|.+++
T Consensus 125 l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~iiDSGt~~~~lP~~~~~~l~~~~ 204 (295)
T cd05474 125 ILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPALLDSGTTLTYLPSDIVDAIAKQL 204 (295)
T ss_pred EEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccEEECCCCccEeCCHHHHHHHHHHh
Confidence 99999999999999999999765 789999999999998753 2345678999999999999999999999998
Q ss_pred CCccccccccceeeeecchhhhhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCccccchhhhHHH
Q 010696 305 GAEGIVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIV 384 (503)
Q Consensus 305 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (503)
++..
T Consensus 205 ~~~~---------------------------------------------------------------------------- 208 (295)
T cd05474 205 GATY---------------------------------------------------------------------------- 208 (295)
T ss_pred CCEE----------------------------------------------------------------------------
Confidence 7551
Q ss_pred HHHHHHHhhhhhHHHHHHHHhhhhccCCCCCCceEEeCCCCCCCCeEEEEECCEEEEeCcccceEeecc--CcceeEEEe
Q 010696 385 FWIQMQLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEE--GHSTICISG 462 (503)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~~g~~~~l~p~~yi~~~~~--~~~~~C~~~ 462 (503)
....+.|.++|+.... |+|+|+|+|.+++|++++|+++... .....|++.
T Consensus 209 ---------------------------~~~~~~~~~~C~~~~~-p~i~f~f~g~~~~i~~~~~~~~~~~~~~~~~~C~~~ 260 (295)
T cd05474 209 ---------------------------DSDEGLYVVDCDAKDD-GSLTFNFGGATISVPLSDLVLPASTDDGGDGACYLG 260 (295)
T ss_pred ---------------------------cCCCcEEEEeCCCCCC-CEEEEEECCeEEEEEHHHhEeccccCCCCCCCeEEE
Confidence 0113568899998766 9999999999999999999987542 345789988
Q ss_pred eEeccCCCCCCCeEEeCHhhhcceEEEEeCCCCeEEEEec
Q 010696 463 FIALDVPPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEA 502 (503)
Q Consensus 463 ~~~~~~~~~~~~~~ILG~~Fl~~~y~vfD~~~~riGfa~~ 502 (503)
|+..+ .+.||||++|||++|++||.+++|||||+|
T Consensus 261 i~~~~-----~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 261 IQPST-----SDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred EEeCC-----CCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 87543 158999999999999999999999999986
No 18
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=2.2e-49 Score=413.76 Aligned_cols=303 Identities=20% Similarity=0.385 Sum_probs=234.9
Q ss_pred cCceEEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCcccc--cCCcccCCCCcccccc-------------------
Q 010696 76 LDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCY--LHSRYRARLSRTYTKI------------------- 134 (503)
Q Consensus 76 ~~~~Y~~~i~iGtPpQ~~~v~~DTGSs~~wV~~~~C~~~~~C~--~~~~y~p~~SsT~~~~------------------- 134 (503)
.+.+|+++|.||||||++.|++||||+++||+|.+|. .|. .++.|||++|+||+..
T Consensus 81 ~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~---~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~ 157 (431)
T PLN03146 81 NGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCD---DCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDE 157 (431)
T ss_pred CCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCc---ccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCC
Confidence 4679999999999999999999999999999999997 676 4579999999999863
Q ss_pred --ceeEEEeecee-EEEEEEEEEEEECC-----eEeeeeEEEEEEeeCCccccccccceeeecccccccCCCCCchHHHH
Q 010696 135 --VPCKIHYGSGQ-ISGFFSQDNVKIGD-----MIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNM 206 (503)
Q Consensus 135 --~~~~~~Yg~gs-~~G~~~~D~v~lg~-----~~i~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l 206 (503)
+.|.+.|++|+ ..|.+++|+|+|++ ..++++.|||+....+. |. ...+||||||+...+ ++.+|
T Consensus 158 ~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~-f~-~~~~GilGLG~~~~S------l~sql 229 (431)
T PLN03146 158 NTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGT-FD-EKGSGIVGLGGGPLS------LISQL 229 (431)
T ss_pred CCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCC-cc-CCCceeEecCCCCcc------HHHHh
Confidence 57999999998 58999999999997 46889999999876552 32 357999999998665 45555
Q ss_pred HHcCCCCccEEEEEecCCC-CCCCccEEEeCcccCCCccc-CeeEEeccc---ccceEEEEeeEEEcCeEeeeccC----
Q 010696 207 VRQGHISQKIFSLWLNQDP-NSEVGGEIIFGGFDWRHFRG-SHIYVPITE---KGYWQIKVGDILIENSSTGFCED---- 277 (503)
Q Consensus 207 ~~qg~i~~~~FSl~l~~~~-~~~~~G~l~fGgiD~~~~~g-~l~~~p~~~---~~~w~v~l~~i~v~~~~~~~~~~---- 277 (503)
..+ +. ++||+||.+.. +....|.|+||+. .++.+ .+.|+|+.. ..+|.|.+++|+||++.+.....
T Consensus 230 ~~~--~~-~~FSycL~~~~~~~~~~g~l~fG~~--~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~ 304 (431)
T PLN03146 230 GSS--IG-GKFSYCLVPLSSDSNGTSKINFGTN--AIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNG 304 (431)
T ss_pred hHh--hC-CcEEEECCCCCCCCCCcceEEeCCc--cccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCcccccc
Confidence 432 44 59999997532 2234799999984 45554 489999974 46899999999999988754221
Q ss_pred --CceEEEccCccCcccCHHHHHHHHHHhCCccccccccceeeeecchhhhhhhhcCCCCCcccccCcceeeCCCccccc
Q 010696 278 --GCTAILDSGTSVLAGPTTVVAQINHAIGAEGIVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMST 355 (503)
Q Consensus 278 --~~~aiiDTGTt~i~lP~~~~~~l~~~l~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 355 (503)
...+||||||++++||+++|++|.+++... +....
T Consensus 305 ~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~----------------------~~~~~--------------------- 341 (431)
T PLN03146 305 VEEGNIIIDSGTTLTLLPSDFYSELESAVEEA----------------------IGGER--------------------- 341 (431)
T ss_pred CCCCcEEEeCCccceecCHHHHHHHHHHHHHH----------------------hcccc---------------------
Confidence 246999999999999999999998887433 00000
Q ss_pred ceeeeeecccCCCCCCCccccchhhhHHHHHHHHHHhhhhhHHHHHHHHhhhhccCCCCCCceEEeCCCC---CCCCeEE
Q 010696 356 GIETVVQHKTSNGSSINESTLCAFCEMIVFWIQMQLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDI---ASMPYVS 432 (503)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~---~~~P~i~ 432 (503)
... ......+|... ..+|.|+
T Consensus 342 -------------------------------------------------------~~~-~~~~~~~C~~~~~~~~~P~i~ 365 (431)
T PLN03146 342 -------------------------------------------------------VSD-PQGLLSLCYSSTSDIKLPIIT 365 (431)
T ss_pred -------------------------------------------------------CCC-CCCCCCccccCCCCCCCCeEE
Confidence 000 00011234321 3689999
Q ss_pred EEECCEEEEeCcccceEeeccCcceeEEEeeEeccCCCCCCCeEEeCHhhhcceEEEEeCCCCeEEEEec
Q 010696 433 FTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEA 502 (503)
Q Consensus 433 f~~~g~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILG~~Fl~~~y~vfD~~~~riGfa~~ 502 (503)
|+|+|.++.|+|++|++...+ ...|+..+ . ..+.||||+.|||++|++||++++|||||++
T Consensus 366 ~~F~Ga~~~l~~~~~~~~~~~--~~~Cl~~~-~------~~~~~IlG~~~q~~~~vvyDl~~~~igFa~~ 426 (431)
T PLN03146 366 AHFTGADVKLQPLNTFVKVSE--DLVCFAMI-P------TSSIAIFGNLAQMNFLVGYDLESKTVSFKPT 426 (431)
T ss_pred EEECCCeeecCcceeEEEcCC--CcEEEEEe-c------CCCceEECeeeEeeEEEEEECCCCEEeeecC
Confidence 999999999999999997643 35798633 2 1236999999999999999999999999986
No 19
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=1.6e-48 Score=390.65 Aligned_cols=287 Identities=23% Similarity=0.405 Sum_probs=222.4
Q ss_pred eEEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCcccccCCcccCCCCccccccceeEEEeecee-EEEEEEEEEEEE
Q 010696 79 QYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVPCKIHYGSGQ-ISGFFSQDNVKI 157 (503)
Q Consensus 79 ~Y~~~i~iGtPpQ~~~v~~DTGSs~~wV~~~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~Yg~gs-~~G~~~~D~v~l 157 (503)
+|+++|.||||||++.|++||||+++||+|.+| +.|.+.|++|+ +.|.+++|+|+|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c-----------------------~~~~i~Yg~Gs~~~G~~~~D~v~i 57 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC-----------------------CLYQVSYGDGSYTTGDLATDTLTL 57 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC-----------------------CeeeeEeCCCceEEEEEEEEEEEe
Confidence 599999999999999999999999999987654 56889999998 589999999999
Q ss_pred CCe-EeeeeEEEEEEeeCCccccccccceeeecccccccCCCCCchHHHHHHcCCCCccEEEEEecCCCCCCCccEEEeC
Q 010696 158 GDM-IIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFG 236 (503)
Q Consensus 158 g~~-~i~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~~G~l~fG 236 (503)
++. .++++.||++...++. + ...+||||||++..+ +..++..+ .+++||+||.+.. ...+|+|+||
T Consensus 58 g~~~~~~~~~Fg~~~~~~~~-~--~~~~GilGLg~~~~s------~~~ql~~~---~~~~FS~~L~~~~-~~~~G~l~fG 124 (299)
T cd05472 58 GSSDVVPGFAFGCGHDNEGL-F--GGAAGLLGLGRGKLS------LPSQTASS---YGGVFSYCLPDRS-SSSSGYLSFG 124 (299)
T ss_pred CCCCccCCEEEECCccCCCc-c--CCCCEEEECCCCcch------HHHHhhHh---hcCceEEEccCCC-CCCCceEEeC
Confidence 998 8999999999876542 2 267999999987654 34445443 3589999998743 1348999999
Q ss_pred cccCCCcccCeeEEecccc----cceEEEEeeEEEcCeEeeec---cCCceEEEccCccCcccCHHHHHHHHHHhCCccc
Q 010696 237 GFDWRHFRGSHIYVPITEK----GYWQIKVGDILIENSSTGFC---EDGCTAILDSGTSVLAGPTTVVAQINHAIGAEGI 309 (503)
Q Consensus 237 giD~~~~~g~l~~~p~~~~----~~w~v~l~~i~v~~~~~~~~---~~~~~aiiDTGTt~i~lP~~~~~~l~~~l~~~~~ 309 (503)
|+|++ .|++.|+|+... .+|.|++++|+|+++.+... .....++|||||+++++|++++++|.+++.+...
T Consensus 125 g~d~~--~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~~~l~~~l~~~~~ 202 (299)
T cd05472 125 AAASV--PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYAALRDAFRAAMA 202 (299)
T ss_pred Ccccc--CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHHHHHHHHHHHHhc
Confidence 99998 899999999753 68999999999999887532 2356799999999999999999999998865400
Q ss_pred cccccceeeeecchhhhhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCccccchhhhHHHHHHHH
Q 010696 310 VSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVFWIQM 389 (503)
Q Consensus 310 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (503)
.+. . .+. .
T Consensus 203 ----------~~~---------~-~~~-~--------------------------------------------------- 210 (299)
T cd05472 203 ----------AYP---------R-APG-F--------------------------------------------------- 210 (299)
T ss_pred ----------cCC---------C-CCC-C---------------------------------------------------
Confidence 000 0 000 0
Q ss_pred HHhhhhhHHHHHHHHhhhhccCCCCCCceEEeCCCCCCCCeEEEEEC-CEEEEeCcccceEeeccCcceeEEEeeEeccC
Q 010696 390 QLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIG-NRSFPLSPEQYIFKIEEGHSTICISGFIALDV 468 (503)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~~-g~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~ 468 (503)
..-..|+. ++|.....+|+|+|+|+ +.++.|+|++|++... .....|+. +...+
T Consensus 211 -------------~~~~~C~~---------~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~-~~~~~C~~-~~~~~- 265 (299)
T cd05472 211 -------------SILDTCYD---------LSGFRSVSVPTVSLHFQGGADVELDASGVLYPVD-DSSQVCLA-FAGTS- 265 (299)
T ss_pred -------------CCCCccCc---------CCCCcCCccCCEEEEECCCCEEEeCcccEEEEec-CCCCEEEE-EeCCC-
Confidence 00001221 22333457999999997 8999999999998432 23468974 54321
Q ss_pred CCCCCCeEEeCHhhhcceEEEEeCCCCeEEEEec
Q 010696 469 PPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEA 502 (503)
Q Consensus 469 ~~~~~~~~ILG~~Fl~~~y~vfD~~~~riGfa~~ 502 (503)
..++.||||+.|||++|+|||++++|||||++
T Consensus 266 --~~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~ 297 (299)
T cd05472 266 --DDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPG 297 (299)
T ss_pred --CCCCCEEEchHHccceEEEEECCCCEEeEecC
Confidence 13457999999999999999999999999986
No 20
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=1.5e-46 Score=372.66 Aligned_cols=226 Identities=43% Similarity=0.752 Sum_probs=198.6
Q ss_pred EEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCcccccCCc--ccCCCCcccccc-ceeEEEeeceeEEEEEEEEEEE
Q 010696 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSR--YRARLSRTYTKI-VPCKIHYGSGQISGFFSQDNVK 156 (503)
Q Consensus 80 Y~~~i~iGtPpQ~~~v~~DTGSs~~wV~~~~C~~~~~C~~~~~--y~p~~SsT~~~~-~~~~~~Yg~gs~~G~~~~D~v~ 156 (503)
|+++|.||+|||++.|++||||+++||+|..|. ...|..... |++..|+++.+. +.+.+.|++|++.|.+++|+|+
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~Y~~g~~~g~~~~D~v~ 79 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCT-SCSCQKHPRFKYDSSKSSTYKDTGCTFSITYGDGSVTGGLGTDTVT 79 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCC-ccccccCCCCccCccCCceeecCCCEEEEEECCCeEEEEEEEeEEE
Confidence 789999999999999999999999999999997 223333333 889999999888 9999999999999999999999
Q ss_pred ECCeEeeeeEEEEEEeeCCccccccccceeeecccccccCCCCCchHHHHHHcCCCCccEEEEEecCCCCCCCccEEEeC
Q 010696 157 IGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFG 236 (503)
Q Consensus 157 lg~~~i~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~~G~l~fG 236 (503)
+++..++++.||++..... .+.....+||||||+...+.....+++++|.+++.|.+++||+||.+.......|.|+||
T Consensus 80 ~~~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~G 158 (283)
T cd05471 80 IGGLTIPNQTFGCATSESG-DFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFG 158 (283)
T ss_pred ECCEEEeceEEEEEeccCC-cccccccceEeecCCcccccccCCCHHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEc
Confidence 9999999999999998765 345567899999999887666678899999999999999999999985322348999999
Q ss_pred cccCCCcccCeeEEeccc--ccceEEEEeeEEEcCeEeeeccCCceEEEccCccCcccCHHHHHHHHHHhCCc
Q 010696 237 GFDWRHFRGSHIYVPITE--KGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAE 307 (503)
Q Consensus 237 giD~~~~~g~l~~~p~~~--~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~l~~~ 307 (503)
|+|++++.+++.|+|+.. ..+|.|.+++|.+++...........++|||||+++++|.+++++|.+++.+.
T Consensus 159 g~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~ 231 (283)
T cd05471 159 GIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSVYDAILKALGAA 231 (283)
T ss_pred ccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHHHHHHHHHhCCc
Confidence 999999999999999987 78999999999999974223456788999999999999999999999999765
No 21
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=5.2e-46 Score=366.05 Aligned_cols=248 Identities=25% Similarity=0.457 Sum_probs=209.8
Q ss_pred eEEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCcccccCCcccCCCCccccccceeEEEeecee-EEEEEEEEEEEE
Q 010696 79 QYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVPCKIHYGSGQ-ISGFFSQDNVKI 157 (503)
Q Consensus 79 ~Y~~~i~iGtPpQ~~~v~~DTGSs~~wV~~~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~Yg~gs-~~G~~~~D~v~l 157 (503)
+|+++|+||||||++.|+|||||+++||+| +.+.+.|++|+ +.|.+++|+|+|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~--------------------------~~~~~~Y~dg~~~~G~~~~D~v~~ 54 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC--------------------------CSYEYSYGDGSSTSGVLATETFTF 54 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC--------------------------CceEeEeCCCceeeeeEEEEEEEe
Confidence 599999999999999999999999999985 34678999765 899999999999
Q ss_pred CCe--EeeeeEEEEEEeeCCccccccccceeeecccccccCCCCCchHHHHHHcCCCCccEEEEEecCCCCCCCccEEEe
Q 010696 158 GDM--IIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIF 235 (503)
Q Consensus 158 g~~--~i~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~~G~l~f 235 (503)
++. .++++.||++....+ +.....+||||||++..+ ++.+|..++ ++||+||.+..+....|+|+|
T Consensus 55 g~~~~~~~~~~Fg~~~~~~~--~~~~~~~GIlGLg~~~~s------~~~ql~~~~----~~Fs~~l~~~~~~~~~G~l~f 122 (265)
T cd05476 55 GDSSVSVPNVAFGCGTDNEG--GSFGGADGILGLGRGPLS------LVSQLGSTG----NKFSYCLVPHDDTGGSSPLIL 122 (265)
T ss_pred cCCCCccCCEEEEecccccC--CccCCCCEEEECCCCccc------HHHHhhccc----CeeEEEccCCCCCCCCCeEEE
Confidence 998 899999999998765 456778999999987543 567777776 799999987532345899999
Q ss_pred CcccCCCcccCeeEEeccc----ccceEEEEeeEEEcCeEeee--------ccCCceEEEccCccCcccCHHHHHHHHHH
Q 010696 236 GGFDWRHFRGSHIYVPITE----KGYWQIKVGDILIENSSTGF--------CEDGCTAILDSGTSVLAGPTTVVAQINHA 303 (503)
Q Consensus 236 GgiD~~~~~g~l~~~p~~~----~~~w~v~l~~i~v~~~~~~~--------~~~~~~aiiDTGTt~i~lP~~~~~~l~~~ 303 (503)
||+|++ +.+++.|+|+.. ..+|.+++++|+|+++.+.+ ......+++||||+++++|+++
T Consensus 123 Gg~d~~-~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~~------- 194 (265)
T cd05476 123 GDAADL-GGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDPA------- 194 (265)
T ss_pred CCcccc-cCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCccc-------
Confidence 999999 999999999976 57999999999999987642 3456789999999999999641
Q ss_pred hCCccccccccceeeeecchhhhhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCccccchhhhHH
Q 010696 304 IGAEGIVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMI 383 (503)
Q Consensus 304 l~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (503)
T Consensus 195 -------------------------------------------------------------------------------- 194 (265)
T cd05476 195 -------------------------------------------------------------------------------- 194 (265)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhhhhHHHHHHHHhhhhccCCCCCCceEEeCCCCCCCCeEEEEEC-CEEEEeCcccceEeeccCcceeEEEe
Q 010696 384 VFWIQMQLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIG-NRSFPLSPEQYIFKIEEGHSTICISG 462 (503)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~~-g~~~~l~p~~yi~~~~~~~~~~C~~~ 462 (503)
+|.|+|+|+ ++++.+++++|+.... ....|+.
T Consensus 195 --------------------------------------------~P~i~~~f~~~~~~~i~~~~y~~~~~--~~~~C~~- 227 (265)
T cd05476 195 --------------------------------------------YPDLTLHFDGGADLELPPENYFVDVG--EGVVCLA- 227 (265)
T ss_pred --------------------------------------------cCCEEEEECCCCEEEeCcccEEEECC--CCCEEEE-
Confidence 188999998 8999999999998543 3468975
Q ss_pred eEeccCCCCCCCeEEeCHhhhcceEEEEeCCCCeEEEEecC
Q 010696 463 FIALDVPPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEAA 503 (503)
Q Consensus 463 ~~~~~~~~~~~~~~ILG~~Fl~~~y~vfD~~~~riGfa~~~ 503 (503)
+... ...+.||||++|||++|++||.+++|||||++.
T Consensus 228 ~~~~----~~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~ 264 (265)
T cd05476 228 ILSS----SSGGVSILGNIQQQNFLVEYDLENSRLGFAPAD 264 (265)
T ss_pred EecC----CCCCcEEEChhhcccEEEEEECCCCEEeeecCC
Confidence 4322 134689999999999999999999999999873
No 22
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=2e-45 Score=363.33 Aligned_cols=258 Identities=24% Similarity=0.408 Sum_probs=213.3
Q ss_pred ceEEEEEEecCCCceEEEEEcCCCCCeeEeCC-CCCCCcccccCCcccCCCCccccccceeEEEeece-eEEEEEEEEEE
Q 010696 78 AQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSS-KCLFSISCYLHSRYRARLSRTYTKIVPCKIHYGSG-QISGFFSQDNV 155 (503)
Q Consensus 78 ~~Y~~~i~iGtPpQ~~~v~~DTGSs~~wV~~~-~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~Yg~g-s~~G~~~~D~v 155 (503)
++|+++|.||||||++.|++||||+++||+|. .|. .|. +.|.+.|++| ++.|.+++|+|
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~---~c~----------------c~~~i~Ygd~~~~~G~~~~D~v 61 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCT---GCQ----------------CDYEIEYADGGSSMGVLVTDIF 61 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCC---CCc----------------CccEeEeCCCCceEEEEEEEEE
Confidence 47999999999999999999999999999984 675 561 6789999965 58999999999
Q ss_pred EECC----eEeeeeEEEEEEeeCCcc-ccccccceeeecccccccCCCCCchHHHHHHcCCCCccEEEEEecCCCCCCCc
Q 010696 156 KIGD----MIIKDQEFVEVTKEGLLP-FLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVG 230 (503)
Q Consensus 156 ~lg~----~~i~~~~Fg~~~~~~~~~-~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~~ 230 (503)
++++ ..++++.|||+....+.. +.....|||||||+... +++.+|.++++| +++||+||.+. .+
T Consensus 62 ~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~------s~~~ql~~~~~i-~~~Fs~~l~~~----~~ 130 (273)
T cd05475 62 SLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKI------SLPSQLASQGII-KNVIGHCLSSN----GG 130 (273)
T ss_pred EEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCC------CHHHHHHhcCCc-CceEEEEccCC----CC
Confidence 9953 577899999997765421 23457899999998754 478899999999 89999999873 26
Q ss_pred cEEEeCcccCCCcccCeeEEecccc---cceEEEEeeEEEcCeEeeeccCCceEEEccCccCcccCHHHHHHHHHHhCCc
Q 010696 231 GEIIFGGFDWRHFRGSHIYVPITEK---GYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAE 307 (503)
Q Consensus 231 G~l~fGgiD~~~~~g~l~~~p~~~~---~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~l~~~ 307 (503)
|.|+|| |..++.|++.|+|+.++ .+|.|++.+|+||++... ..+..++|||||+++++|+++|
T Consensus 131 g~l~~G--~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~--~~~~~~ivDTGTt~t~lp~~~y---------- 196 (273)
T cd05475 131 GFLFFG--DDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTG--GKGLEVVFDSGSSYTYFNAQAY---------- 196 (273)
T ss_pred eEEEEC--CCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEECc--CCCceEEEECCCceEEcCCccc----------
Confidence 899998 55667899999999864 799999999999998543 4567899999999999997521
Q ss_pred cccccccceeeeecchhhhhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCccccchhhhHHHHHH
Q 010696 308 GIVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVFWI 387 (503)
Q Consensus 308 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (503)
T Consensus 197 -------------------------------------------------------------------------------- 196 (273)
T cd05475 197 -------------------------------------------------------------------------------- 196 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhhhHHHHHHHHhhhhccCCCCCCceEEeCCCCCCCCeEEEEECC----EEEEeCcccceEeeccCcceeEEEee
Q 010696 388 QMQLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGN----RSFPLSPEQYIFKIEEGHSTICISGF 463 (503)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~~g----~~~~l~p~~yi~~~~~~~~~~C~~~~ 463 (503)
+|+|+|.|++ ++++|+|++|++...+ ...|+..+
T Consensus 197 ----------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~--~~~Cl~~~ 234 (273)
T cd05475 197 ----------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEK--GNVCLGIL 234 (273)
T ss_pred ----------------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCC--CCEEEEEe
Confidence 5889999976 7999999999987443 35798866
Q ss_pred EeccCCCCCCCeEEeCHhhhcceEEEEeCCCCeEEEEecC
Q 010696 464 IALDVPPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEAA 503 (503)
Q Consensus 464 ~~~~~~~~~~~~~ILG~~Fl~~~y~vfD~~~~riGfa~~~ 503 (503)
...+. ..++.||||+.|||++|++||++++|||||++.
T Consensus 235 ~~~~~--~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~ 272 (273)
T cd05475 235 NGSEI--GLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSD 272 (273)
T ss_pred cCCCc--CCCceEEECceEEEeeEEEEECcCCEeCcccCC
Confidence 54321 224589999999999999999999999999874
No 23
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=2.4e-41 Score=345.79 Aligned_cols=312 Identities=18% Similarity=0.258 Sum_probs=228.1
Q ss_pred ecCCCce-EEEEEcCCCCCeeEeCCC----------CCCCcccccCCcccCCC------Ccccccc-ceeEEE-eecee-
Q 010696 86 IGSPPQS-FSVVFDTGSSNLWVPSSK----------CLFSISCYLHSRYRARL------SRTYTKI-VPCKIH-YGSGQ- 145 (503)
Q Consensus 86 iGtPpQ~-~~v~~DTGSs~~wV~~~~----------C~~~~~C~~~~~y~p~~------SsT~~~~-~~~~~~-Yg~gs- 145 (503)
+|||-.+ +.|++||||+++||+|.+ |. +..|..+..|++.+ ++...+. |.+... |++|+
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~~~sst~~~~~C~-s~~C~~~~~~~~~~~~~~~~~~~c~~~~C~y~~~~y~~gs~ 80 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDAGHSSTYQTVPCS-SSVCSLANRYHCPGTCGGAPGPGCGNNTCTAHPYNPVTGEC 80 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCCCCcCCCCccCcC-ChhhccccccCCCccccCCCCCCCCCCcCeeEccccccCcE
Confidence 5788777 999999999999997764 44 45677666776543 2223222 556544 77885
Q ss_pred EEEEEEEEEEEECC--------eEeeeeEEEEEEeeCCccccccccceeeecccccccCCCCCchHHHHHHcCCCCccEE
Q 010696 146 ISGFFSQDNVKIGD--------MIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIF 217 (503)
Q Consensus 146 ~~G~~~~D~v~lg~--------~~i~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~F 217 (503)
..|++++|+|+|+. ..++++.|||+.......+ ...+|||||||+..++ +..+|..++. .+++|
T Consensus 81 t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~-~~~~dGIlGLg~~~lS------l~sql~~~~~-~~~~F 152 (362)
T cd05489 81 ATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGL-PPGAQGVAGLGRSPLS------LPAQLASAFG-VARKF 152 (362)
T ss_pred eeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCC-ccccccccccCCCccc------hHHHhhhhcC-CCcce
Confidence 78999999999973 3788999999977532222 2347999999999876 3456666554 46899
Q ss_pred EEEecCCCCCCCccEEEeCcccCCCcc------cCeeEEecccc----cceEEEEeeEEEcCeEeeec--------cCCc
Q 010696 218 SLWLNQDPNSEVGGEIIFGGFDWRHFR------GSHIYVPITEK----GYWQIKVGDILIENSSTGFC--------EDGC 279 (503)
Q Consensus 218 Sl~l~~~~~~~~~G~l~fGgiD~~~~~------g~l~~~p~~~~----~~w~v~l~~i~v~~~~~~~~--------~~~~ 279 (503)
|+||.+.. ...|.|+||+.++.++. +.+.|+|+..+ .+|.|+|++|+||++.+.+. .++.
T Consensus 153 S~CL~~~~--~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~~ 230 (362)
T cd05489 153 ALCLPSSP--GGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGPG 230 (362)
T ss_pred EEEeCCCC--CCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccccCCC
Confidence 99998753 23799999999988774 78999999754 79999999999999877532 2345
Q ss_pred eEEEccCccCcccCHHHHHHHHHHhCCccccccccceeeeecchhhhhhhhcCCCCCcccccCcceeeCCCcccccceee
Q 010696 280 TAILDSGTSVLAGPTTVVAQINHAIGAEGIVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIET 359 (503)
Q Consensus 280 ~aiiDTGTt~i~lP~~~~~~l~~~l~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~ 359 (503)
.+||||||++++||+++|++|.+++.+.- ..+... .+.
T Consensus 231 g~iiDSGTs~t~lp~~~y~~l~~a~~~~~----------~~~~~~---------~~~----------------------- 268 (362)
T cd05489 231 GVKLSTVVPYTVLRSDIYRAFTQAFAKAT----------ARIPRV---------PAA----------------------- 268 (362)
T ss_pred cEEEecCCceEEECHHHHHHHHHHHHHHh----------cccCcC---------CCC-----------------------
Confidence 79999999999999999999999986430 000000 000
Q ss_pred eeecccCCCCCCCccccchhhhHHHHHHHHHHhhhhhHHHHHHHHhhhhccCCCCCCceEEeCCCCCCCCeEEEEECC--
Q 010696 360 VVQHKTSNGSSINESTLCAFCEMIVFWIQMQLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGN-- 437 (503)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~~g-- 437 (503)
..+.++|+.... ...|+....+|+|+|+|+|
T Consensus 269 ------------------------------------------~~~~~~C~~~~~-----~~~~~~~~~~P~it~~f~g~g 301 (362)
T cd05489 269 ------------------------------------------AVFPELCYPASA-----LGNTRLGYAVPAIDLVLDGGG 301 (362)
T ss_pred ------------------------------------------CCCcCccccCCC-----cCCcccccccceEEEEEeCCC
Confidence 000024444321 1234434689999999975
Q ss_pred EEEEeCcccceEeeccCcceeEEEeeEeccCCCCCCCeEEeCHhhhcceEEEEeCCCCeEEEEec
Q 010696 438 RSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEA 502 (503)
Q Consensus 438 ~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILG~~Fl~~~y~vfD~~~~riGfa~~ 502 (503)
.+|.|+|++|+++..+ ...|+ +|...+.. .++.||||+.|||++|++||.+++|||||++
T Consensus 302 ~~~~l~~~ny~~~~~~--~~~Cl-~f~~~~~~--~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 302 VNWTIFGANSMVQVKG--GVACL-AFVDGGSE--PRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred eEEEEcCCceEEEcCC--CcEEE-EEeeCCCC--CCceEEEeeheecceEEEEECCCCEeecccC
Confidence 9999999999998653 35896 57654321 2458999999999999999999999999975
No 24
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.89 E-value=1.5e-22 Score=171.60 Aligned_cols=107 Identities=51% Similarity=0.828 Sum_probs=94.8
Q ss_pred EEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCcccccCCcc-cCCCCcccccc-ceeEEEeeceeEEEEEEEEEEEECC
Q 010696 82 GEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRY-RARLSRTYTKI-VPCKIHYGSGQISGFFSQDNVKIGD 159 (503)
Q Consensus 82 ~~i~iGtPpQ~~~v~~DTGSs~~wV~~~~C~~~~~C~~~~~y-~p~~SsT~~~~-~~~~~~Yg~gs~~G~~~~D~v~lg~ 159 (503)
++|.||||||++.|+|||||+++||+++.|. ...|..+..| +|++|++++.. +.+.+.|++|++.|.+++|+|+|++
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~-~~~~~~~~~~~~~~~sst~~~~~~~~~~~Y~~g~~~g~~~~D~v~ig~ 79 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQ-SLAIYSHSSYDDPSASSTYSDNGCTFSITYGTGSLSGGLSTDTVSIGD 79 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCC-CcccccccccCCcCCCCCCCCCCcEEEEEeCCCeEEEEEEEEEEEECC
Confidence 4799999999999999999999999999997 3334455666 99999999988 9999999999999999999999999
Q ss_pred eEeeeeEEEEEEeeCCccccccccceeeec
Q 010696 160 MIIKDQEFVEVTKEGLLPFLALQFDGILGL 189 (503)
Q Consensus 160 ~~i~~~~Fg~~~~~~~~~~~~~~~dGIlGL 189 (503)
..++++.||++....+..+.....+|||||
T Consensus 80 ~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 80 IEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred EEECCEEEEEEEecCCccccccccccccCC
Confidence 999999999999887654555678999998
No 25
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.86 E-value=9e-21 Score=172.65 Aligned_cols=135 Identities=35% Similarity=0.559 Sum_probs=104.4
Q ss_pred EEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCcccccCCcccCCCCcccccc-----------------------ce
Q 010696 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKI-----------------------VP 136 (503)
Q Consensus 80 Y~~~i~iGtPpQ~~~v~~DTGSs~~wV~~~~C~~~~~C~~~~~y~p~~SsT~~~~-----------------------~~ 136 (503)
|+++|.||||+|++.|++||||+.+|++| ..+.|+|.+|+||+.. +.
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C----------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~ 70 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC----------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCP 70 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET--------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC----------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCccc
Confidence 89999999999999999999999999986 2567777777777643 47
Q ss_pred eEEEeecee-EEEEEEEEEEEECC-----eEeeeeEEEEEEeeCCccccccccceeeecccccccCCCCCchHHHHHHcC
Q 010696 137 CKIHYGSGQ-ISGFFSQDNVKIGD-----MIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQG 210 (503)
Q Consensus 137 ~~~~Yg~gs-~~G~~~~D~v~lg~-----~~i~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg 210 (503)
+.+.|++++ ..|.+++|+++++. ..+.++.|||+....+.. ...+||||||+...+ ++.+|.++
T Consensus 71 y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~---~~~~GilGLg~~~~S------l~sQl~~~- 140 (164)
T PF14543_consen 71 YSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLF---YGADGILGLGRGPLS------LPSQLASS- 140 (164)
T ss_dssp EEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSS---TTEEEEEE-SSSTTS------HHHHHHHH-
T ss_pred ceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccCC---cCCCcccccCCCccc------HHHHHHHh-
Confidence 899999887 69999999999975 568899999999877532 277999999988776 77888877
Q ss_pred CCCccEEEEEecCCCCCCCccEEEeCc
Q 010696 211 HISQKIFSLWLNQDPNSEVGGEIIFGG 237 (503)
Q Consensus 211 ~i~~~~FSl~l~~~~~~~~~G~l~fGg 237 (503)
..++||+||.+ .+....|.|+||+
T Consensus 141 --~~~~FSyCL~~-~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 141 --SGNKFSYCLPS-SSPSSSGFLSFGD 164 (164)
T ss_dssp ----SEEEEEB-S--SSSSEEEEEECS
T ss_pred --cCCeEEEECCC-CCCCCCEEEEeCc
Confidence 56899999998 2234589999995
No 26
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.73 E-value=4.2e-17 Score=148.23 Aligned_cols=153 Identities=23% Similarity=0.359 Sum_probs=103.3
Q ss_pred ceEEEEeeEEEcCeEeeeccC-------CceEEEccCccCcccCHHHHHHHHHHhCCccccccccceeeeecchhhhhhh
Q 010696 257 YWQIKVGDILIENSSTGFCED-------GCTAILDSGTSVLAGPTTVVAQINHAIGAEGIVSMQCKTVVFEYGNMIWEFL 329 (503)
Q Consensus 257 ~w~v~l~~i~v~~~~~~~~~~-------~~~aiiDTGTt~i~lP~~~~~~l~~~l~~~~~~~~~c~~~~~~~~~~~~~~~ 329 (503)
+|.|++.+|+||++.+.+... ...++|||||++++||+++|+++.+++.+.-
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~--------------------- 59 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQM--------------------- 59 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHH---------------------
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHh---------------------
Confidence 488999999999999876543 4679999999999999999999999985440
Q ss_pred hcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCccccchhhhHHHHHHHHHHhhhhhHHHHHHHHhhhhc
Q 010696 330 ISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVFWIQMQLKQQKTKEAIFKYADKLCE 409 (503)
Q Consensus 330 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 409 (503)
..... .... -...-.++|+
T Consensus 60 -~~~~~----------------------~~~~--------------------------------------~~~~~~~~Cy 78 (161)
T PF14541_consen 60 -GAPGV----------------------SREA--------------------------------------PPFSGFDLCY 78 (161)
T ss_dssp -HTCT------------------------CEE-----------------------------------------TT-S-EE
T ss_pred -hhccc----------------------cccc--------------------------------------ccCCCCCcee
Confidence 00000 0000 0000123566
Q ss_pred cCCCCCCceEEeCCCCCCCCeEEEEEC-CEEEEeCcccceEeeccCcceeEEEeeEeccCCCCCCCeEEeCHhhhcceEE
Q 010696 410 VLPNPMGKSFINCDDIASMPYVSFTIG-NRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPLWVLGDMFLRAYHT 488 (503)
Q Consensus 410 ~~~~~~~~~~~~C~~~~~~P~i~f~~~-g~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILG~~Fl~~~y~ 488 (503)
..+... .+ .....+|+|+|+|. |.+++|+|++|++...+ ...|+..... + ....+..|||..+|+++++
T Consensus 79 ~~~~~~----~~-~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~--~~~Cla~~~~-~--~~~~~~~viG~~~~~~~~v 148 (161)
T PF14541_consen 79 NLSSFG----VN-RDWAKFPTITLHFEGGADLTLPPENYFVQVSP--GVFCLAFVPS-D--ADDDGVSVIGNFQQQNYHV 148 (161)
T ss_dssp EGGCS-----EE-TTEESS--EEEEETTSEEEEE-HHHHEEEECT--TEEEESEEEE-T--STTSSSEEE-HHHCCTEEE
T ss_pred eccccc----cc-cccccCCeEEEEEeCCcceeeeccceeeeccC--CCEEEEEEcc-C--CCCCCcEEECHHHhcCcEE
Confidence 665421 01 12358999999996 89999999999998763 4789975543 1 2244688999999999999
Q ss_pred EEeCCCCeEEEEe
Q 010696 489 VFDFGNLQIGFAE 501 (503)
Q Consensus 489 vfD~~~~riGfa~ 501 (503)
+||++++||||+|
T Consensus 149 ~fDl~~~~igF~~ 161 (161)
T PF14541_consen 149 VFDLENGRIGFAP 161 (161)
T ss_dssp EEETTTTEEEEEE
T ss_pred EEECCCCEEEEeC
Confidence 9999999999996
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.12 E-value=9.4e-06 Score=66.29 Aligned_cols=92 Identities=21% Similarity=0.359 Sum_probs=65.7
Q ss_pred eEEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCcccccCCcccCCCCccccccceeEEEeeceeE-EEEEEEEEEEE
Q 010696 79 QYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVPCKIHYGSGQI-SGFFSQDNVKI 157 (503)
Q Consensus 79 ~Y~~~i~iGtPpQ~~~v~~DTGSs~~wV~~~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~Yg~gs~-~G~~~~D~v~l 157 (503)
.|++++.|+. +++++++|||++.+|+...... .+.. .........+...+|.. ......+.+++
T Consensus 2 ~~~v~v~i~~--~~~~~llDTGa~~s~i~~~~~~---~l~~----------~~~~~~~~~~~~~~G~~~~~~~~~~~i~i 66 (96)
T cd05483 2 HFVVPVTING--QPVRFLLDTGASTTVISEELAE---RLGL----------PLTLGGKVTVQTANGRVRAARVRLDSLQI 66 (96)
T ss_pred cEEEEEEECC--EEEEEEEECCCCcEEcCHHHHH---HcCC----------CccCCCcEEEEecCCCccceEEEcceEEE
Confidence 5899999994 9999999999999999764321 1110 01111445666777763 45556899999
Q ss_pred CCeEeeeeEEEEEEeeCCccccccccceeeeccc
Q 010696 158 GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGF 191 (503)
Q Consensus 158 g~~~i~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~ 191 (503)
|+..++++.+..+..... ..+||||+.+
T Consensus 67 g~~~~~~~~~~v~d~~~~------~~~gIlG~d~ 94 (96)
T cd05483 67 GGITLRNVPAVVLPGDAL------GVDGLLGMDF 94 (96)
T ss_pred CCcEEeccEEEEeCCccc------CCceEeChHH
Confidence 999999998887755321 4699999864
No 28
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=97.45 E-value=0.00019 Score=48.47 Aligned_cols=37 Identities=41% Similarity=0.648 Sum_probs=35.3
Q ss_pred cchhhhHHHHHHHHHHhhhhhHHHHHHHHhhhhccCC
Q 010696 376 LCAFCEMIVFWIQMQLKQQKTKEAIFKYADKLCEVLP 412 (503)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 412 (503)
.|..|++++.++++.++.+.|+++|.+.+++.|..+|
T Consensus 3 ~C~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~~lP 39 (39)
T PF05184_consen 3 ECDICKFVVKEIEKLLKNNKTEEEIKKALEKACNKLP 39 (39)
T ss_dssp HHHHHHHHHHHHHHHHHSTCHHHHHHHHHHHHHTTSC
T ss_pred cchHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhhCc
Confidence 6999999999999999999999999999999998775
No 29
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=97.23 E-value=0.0019 Score=55.47 Aligned_cols=101 Identities=18% Similarity=0.300 Sum_probs=66.5
Q ss_pred EeceeccCceEEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCcccccCCcccCCCCccccccceeEEEeeceeE-EE
Q 010696 70 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVPCKIHYGSGQI-SG 148 (503)
Q Consensus 70 ~~l~~~~~~~Y~~~i~iGtPpQ~~~v~~DTGSs~~wV~~~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~Yg~gs~-~G 148 (503)
+++....++.|++++.|.. +++.+++|||++.+-++...-. .. ..++..- .....+.=..|.. ..
T Consensus 2 ~~i~~~~~g~~~v~~~InG--~~~~flVDTGAs~t~is~~~A~---~L----gl~~~~~-----~~~~~~~ta~G~~~~~ 67 (121)
T TIGR02281 2 VQLAKDGDGHFYATGRVNG--RNVRFLVDTGATSVALNEEDAQ---RL----GLDLNRL-----GYTVTVSTANGQIKAA 67 (121)
T ss_pred EEEEEcCCCeEEEEEEECC--EEEEEEEECCCCcEEcCHHHHH---Hc----CCCcccC-----CceEEEEeCCCcEEEE
Confidence 4555566899999999986 7999999999999988643211 00 0111100 0223333345554 34
Q ss_pred EEEEEEEEECCeEeeeeEEEEEEeeCCccccccccceeeeccc
Q 010696 149 FFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGF 191 (503)
Q Consensus 149 ~~~~D~v~lg~~~i~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~ 191 (503)
.+.-|.+++|+..++|....++.... ..+|+||+.+
T Consensus 68 ~~~l~~l~iG~~~~~nv~~~v~~~~~-------~~~~LLGm~f 103 (121)
T TIGR02281 68 RVTLDRVAIGGIVVNDVDAMVAEGGA-------LSESLLGMSF 103 (121)
T ss_pred EEEeCEEEECCEEEeCcEEEEeCCCc-------CCceEcCHHH
Confidence 56889999999999999977664321 1279999985
No 30
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.55 E-value=0.018 Score=45.99 Aligned_cols=88 Identities=24% Similarity=0.331 Sum_probs=53.8
Q ss_pred EEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCcccccCCcccCCCCccccccceeEEEeecee-EEEEEEEEEEEECCe
Q 010696 82 GEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVPCKIHYGSGQ-ISGFFSQDNVKIGDM 160 (503)
Q Consensus 82 ~~i~iGtPpQ~~~v~~DTGSs~~wV~~~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~Yg~gs-~~G~~~~D~v~lg~~ 160 (503)
+++.|+. +++++++|||++.+.+...-+. ... ..+.... ....+.-.+|. .......+.+++|+.
T Consensus 1 V~v~vng--~~~~~liDTGa~~~~i~~~~~~---~l~----~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~i~ig~~ 66 (90)
T PF13650_consen 1 VPVKVNG--KPVRFLIDTGASISVISRSLAK---KLG----LKPRPKS-----VPISVSGAGGSVTVYRGRVDSITIGGI 66 (90)
T ss_pred CEEEECC--EEEEEEEcCCCCcEEECHHHHH---HcC----CCCcCCc-----eeEEEEeCCCCEEEEEEEEEEEEECCE
Confidence 3567775 8999999999998887644332 000 0111000 12233333444 234556678999999
Q ss_pred EeeeeEEEEEEeeCCccccccccceeeecc
Q 010696 161 IIKDQEFVEVTKEGLLPFLALQFDGILGLG 190 (503)
Q Consensus 161 ~i~~~~Fg~~~~~~~~~~~~~~~dGIlGLg 190 (503)
.+.+..|-... .....+||||+-
T Consensus 67 ~~~~~~~~v~~-------~~~~~~~iLG~d 89 (90)
T PF13650_consen 67 TLKNVPFLVVD-------LGDPIDGILGMD 89 (90)
T ss_pred EEEeEEEEEEC-------CCCCCEEEeCCc
Confidence 99888876665 134558999974
No 31
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.84 E-value=0.061 Score=46.37 Aligned_cols=92 Identities=21% Similarity=0.312 Sum_probs=59.0
Q ss_pred cCceEEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCcccccCCcccCCCCccccccceeE-EEeece--eEEEEEEE
Q 010696 76 LDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVPCK-IHYGSG--QISGFFSQ 152 (503)
Q Consensus 76 ~~~~Y~~~i~iGtPpQ~~~v~~DTGSs~~wV~~~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~-~~Yg~g--s~~G~~~~ 152 (503)
....+++++.|+. +++++++|||++..++...-+. .+.-.. ... ..+. ...+.| ...|....
T Consensus 13 ~~~~~~v~~~Ing--~~~~~LvDTGAs~s~Is~~~a~---~lgl~~----~~~------~~~~~~~~g~g~~~~~g~~~~ 77 (124)
T cd05479 13 KVPMLYINVEING--VPVKAFVDSGAQMTIMSKACAE---KCGLMR----LID------KRFQGIAKGVGTQKILGRIHL 77 (124)
T ss_pred eeeEEEEEEEECC--EEEEEEEeCCCceEEeCHHHHH---HcCCcc----ccC------cceEEEEecCCCcEEEeEEEE
Confidence 4567999999997 8899999999999988644332 121110 000 1111 222323 24677778
Q ss_pred EEEEECCeEeeeeEEEEEEeeCCccccccccceeeeccc
Q 010696 153 DNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGF 191 (503)
Q Consensus 153 D~v~lg~~~i~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~ 191 (503)
+.+.+++...+ ..|.+... ...|+|||+-+
T Consensus 78 ~~l~i~~~~~~-~~~~Vl~~--------~~~d~ILG~d~ 107 (124)
T cd05479 78 AQVKIGNLFLP-CSFTVLED--------DDVDFLIGLDM 107 (124)
T ss_pred EEEEECCEEee-eEEEEECC--------CCcCEEecHHH
Confidence 89999998865 66655522 24599999874
No 32
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=95.47 E-value=0.084 Score=53.13 Aligned_cols=197 Identities=17% Similarity=0.199 Sum_probs=104.0
Q ss_pred eEEEEEEecCCC----ceE-EEEEcCCCCCeeEeCCCCCCCcccccCCcccCCCCccccccceeEEEeeceeEEEEEEEE
Q 010696 79 QYYGEIGIGSPP----QSF-SVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVPCKIHYGSGQISGFFSQD 153 (503)
Q Consensus 79 ~Y~~~i~iGtPp----Q~~-~v~~DTGSs~~wV~~~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~Yg~gs~~G~~~~D 153 (503)
.-++.|+|=-|. |++ .|++||||.-+=|..+.-.. ...+..-.. +..-.+ -.--..|++|..-|-+.+-
T Consensus 23 ~p~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~sAl~~----~l~~~Lp~~-t~~g~~-laEC~~F~sgytWGsVr~A 96 (370)
T PF11925_consen 23 IPTVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFASALPS----SLAGSLPQQ-TGGGAP-LAECAQFASGYTWGSVRTA 96 (370)
T ss_pred ceeeEEEEeCCCCCCceeeCcEEEeccchhhhHHHhhhch----hhhccCCcc-cCCCcc-hhhhhhccCcccccceEEE
Confidence 344555554442 566 49999999887765442210 000001111 110011 1122567777778999999
Q ss_pred EEEECCeEeeeeEEEEEEeeC-----------C---ccccccccceeeecccccccC----------------CCC---C
Q 010696 154 NVKIGDMIIKDQEFVEVTKEG-----------L---LPFLALQFDGILGLGFRDIAA----------------GNA---T 200 (503)
Q Consensus 154 ~v~lg~~~i~~~~Fg~~~~~~-----------~---~~~~~~~~dGIlGLg~~~~s~----------------~~~---~ 200 (503)
.|+|++....+.++.++.+.. + ........+||||+|.-.... ... +
T Consensus 97 dV~igge~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~~~DcG~~C~~sa~~~~YY~C~~~~sCt 176 (370)
T PF11925_consen 97 DVTIGGETASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPFPYDCGAACAQSALPGNYYSCPSGGSCT 176 (370)
T ss_pred EEEEcCeeccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCCccccCchhhcccCCCceEECCCCCCee
Confidence 999999877676666664321 0 112245679999999643221 000 0
Q ss_pred chHHHHHHcCCCCccEEEEEecCCC------------CCCCccEEEeCcccCCC---cccCeeEEecccccceEEEEeeE
Q 010696 201 PLWYNMVRQGHISQKIFSLWLNQDP------------NSEVGGEIIFGGFDWRH---FRGSHIYVPITEKGYWQIKVGDI 265 (503)
Q Consensus 201 ~~~~~l~~qg~i~~~~FSl~l~~~~------------~~~~~G~l~fGgiD~~~---~~g~l~~~p~~~~~~w~v~l~~i 265 (503)
+.-..+-+| +..|+..|-.+.+. .....|.|+||= ++.- ..+.....+....++...
T Consensus 177 ~t~v~~~~Q--V~NPV~~Fa~DNNGvii~lP~v~~~Ga~SatG~LiFGI-gTQsNN~l~~~~~~~~~~~~G~~tt----- 248 (370)
T PF11925_consen 177 STTVPLAQQ--VANPVARFATDNNGVIIQLPAVSASGAASATGTLIFGI-GTQSNNALPSGATVLTTDSNGDFTT----- 248 (370)
T ss_pred cccchhhhc--ccCcccccCccCCeEEEecCCCCCCCCccceEEEEEec-CCcccCcccccceEEeecCCceEEE-----
Confidence 111112223 45566555333221 234589999983 3222 222245556666655332
Q ss_pred EEcCeEeeeccCCceEEEccCccCcccCHH
Q 010696 266 LIENSSTGFCEDGCTAILDSGTSVLAGPTT 295 (503)
Q Consensus 266 ~v~~~~~~~~~~~~~aiiDTGTt~i~lP~~ 295 (503)
.++|.... ...||||+.-.++|+.
T Consensus 249 ~~~G~t~~------~sf~DSGSNg~fF~d~ 272 (370)
T PF11925_consen 249 TFNGQTYS------ASFFDSGSNGYFFPDS 272 (370)
T ss_pred EecCceee------eeeEecCCceeeccCC
Confidence 23444332 2499999999999864
No 33
>PF03489 SapB_2: Saposin-like type B, region 2; InterPro: IPR008138 Saposins are small lysosomal proteins that serve as activators of various lysosomal lipid-degrading enzymes []. They probably act by isolating the lipid substrate from the membrane surroundings, thus making it more accessible to the soluble degradative enzymes. All mammalian saposins are synthesized as a single precursor molecule (prosaposin) which contains four Saposin-B domains, yielding the active saposins after proteolytic cleavage, and two Saposin-A domains that are removed in the activation reaction. The Saposin-B domains also occur in other proteins, many of them active in the lysis of membranes [, ].; PDB: 3BQQ_A 2RB3_B 2R0R_A 3BQP_A 2R1Q_A 1NKL_A 1L9L_A 1QDM_C 3RFI_A 4DDJ_A ....
Probab=94.35 E-value=0.0046 Score=40.56 Aligned_cols=34 Identities=38% Similarity=0.863 Sum_probs=31.8
Q ss_pred cccceeeeecchhhhhhhhcCCCCCcccccCcce
Q 010696 312 MQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLC 345 (503)
Q Consensus 312 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 345 (503)
..|+.++++|+..|++.+.+.+.|+.+|..+++|
T Consensus 2 ~~C~~~V~~y~~~ii~~l~~~~~p~~iC~~i~~C 35 (35)
T PF03489_consen 2 DECKNFVDQYGPQIIQLLEKQLDPQQICTKIGLC 35 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTHHHHHHHTTSS
T ss_pred cHHHHHHHHHHHHHHHHHHhcCChHHHHHHcCCC
Confidence 3589999999999999999999999999999987
No 34
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=94.11 E-value=0.26 Score=45.58 Aligned_cols=92 Identities=13% Similarity=0.178 Sum_probs=65.1
Q ss_pred CCceeEeceeccCceEEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCcccccCCcccCCCCccccccceeEEEeece
Q 010696 65 PKADVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVPCKIHYGSG 144 (503)
Q Consensus 65 ~~~~~~~l~~~~~~~Y~~~i~iGtPpQ~~~v~~DTGSs~~wV~~~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~Yg~g 144 (503)
.+...+.|....++.|.++..|-. |+++.++|||-+.+.+....-. .--+|..... .+..+.=.+|
T Consensus 91 ~g~~~v~Lak~~~GHF~a~~~VNG--k~v~fLVDTGATsVal~~~dA~-------RlGid~~~l~-----y~~~v~TANG 156 (215)
T COG3577 91 DGYQEVSLAKSRDGHFEANGRVNG--KKVDFLVDTGATSVALNEEDAR-------RLGIDLNSLD-----YTITVSTANG 156 (215)
T ss_pred CCceEEEEEecCCCcEEEEEEECC--EEEEEEEecCcceeecCHHHHH-------HhCCCccccC-----CceEEEccCC
Confidence 345578888888999999999986 9999999999999988754321 1123332111 3344555667
Q ss_pred eEE-EEEEEEEEEECCeEeeeeEEEEE
Q 010696 145 QIS-GFFSQDNVKIGDMIIKDQEFVEV 170 (503)
Q Consensus 145 s~~-G~~~~D~v~lg~~~i~~~~Fg~~ 170 (503)
... -.+-.|.|.||++.+.|+.=-++
T Consensus 157 ~~~AA~V~Ld~v~IG~I~~~nV~A~V~ 183 (215)
T COG3577 157 RARAAPVTLDRVQIGGIRVKNVDAMVA 183 (215)
T ss_pred ccccceEEeeeEEEccEEEcCchhhee
Confidence 754 45778999999999988764433
No 35
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=93.98 E-value=0.29 Score=39.46 Aligned_cols=75 Identities=13% Similarity=0.139 Sum_probs=47.3
Q ss_pred EEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCcccccCCcccCCCCccccccceeEEEeecee---EEEEEEEEEEE
Q 010696 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVPCKIHYGSGQ---ISGFFSQDNVK 156 (503)
Q Consensus 80 Y~~~i~iGtPpQ~~~v~~DTGSs~~wV~~~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~Yg~gs---~~G~~~~D~v~ 156 (503)
|++++.|+. +++++++||||+..++....+. ...+ .+ ..+ ....+.-.+|. ..|.+ .+.++
T Consensus 1 ~~~~~~Ing--~~i~~lvDTGA~~svis~~~~~-~lg~------~~-----~~~-~~~~v~~a~G~~~~~~G~~-~~~v~ 64 (91)
T cd05484 1 KTVTLLVNG--KPLKFQLDTGSAITVISEKTWR-KLGS------PP-----LKP-TKKRLRTATGTKLSVLGQI-LVTVK 64 (91)
T ss_pred CEEEEEECC--EEEEEEEcCCcceEEeCHHHHH-HhCC------Cc-----ccc-ccEEEEecCCCEeeEeEEE-EEEEE
Confidence 578899987 8999999999999999755432 0000 00 111 22333334443 36776 89999
Q ss_pred ECCeEeeeeEEEEEE
Q 010696 157 IGDMIIKDQEFVEVT 171 (503)
Q Consensus 157 lg~~~i~~~~Fg~~~ 171 (503)
+++.+. ...|-+..
T Consensus 65 ~~~~~~-~~~~~v~~ 78 (91)
T cd05484 65 YGGKTK-VLTLYVVK 78 (91)
T ss_pred ECCEEE-EEEEEEEE
Confidence 999773 35554443
No 36
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=93.24 E-value=1.2 Score=38.23 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=21.9
Q ss_pred eEEeCHhhhcceEEEEeCCCCeEE
Q 010696 475 LWVLGDMFLRAYHTVFDFGNLQIG 498 (503)
Q Consensus 475 ~~ILG~~Fl~~~y~vfD~~~~riG 498 (503)
..|||..||+.+-.+.|+.+++|-
T Consensus 100 d~ILG~d~L~~~~~~ID~~~~~i~ 123 (124)
T cd05479 100 DFLIGLDMLKRHQCVIDLKENVLR 123 (124)
T ss_pred CEEecHHHHHhCCeEEECCCCEEE
Confidence 469999999999999999999874
No 37
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=92.02 E-value=2.5 Score=36.14 Aligned_cols=36 Identities=11% Similarity=0.184 Sum_probs=26.9
Q ss_pred ccceEEEEeeEEEcCeEeeeccCCceEEEccCccCcccCHHHHHHH
Q 010696 255 KGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQI 300 (503)
Q Consensus 255 ~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l 300 (503)
.+++.+. +.|||+++. ++||||++.+.++.++.+++
T Consensus 9 ~g~~~v~---~~InG~~~~-------flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYAT---GRVNGRNVR-------FLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEEE---EEECCEEEE-------EEEECCCCcEEcCHHHHHHc
Confidence 4445443 567787553 89999999999999987664
No 38
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=91.18 E-value=1.3 Score=35.24 Aligned_cols=81 Identities=20% Similarity=0.181 Sum_probs=46.5
Q ss_pred EEEecCCCceEEEEEcCCCCCeeEeCCCCCCCcccccCCcccCCCCccccccceeEEEeeceeEEEEE-EEE-EEEECCe
Q 010696 83 EIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVPCKIHYGSGQISGFF-SQD-NVKIGDM 160 (503)
Q Consensus 83 ~i~iGtPpQ~~~v~~DTGSs~~wV~~~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~Yg~gs~~G~~-~~D-~v~lg~~ 160 (503)
.+.|.. +++++++|||++.+-+....+. .. ... .....+.=.+|...-.+ ..+ .+.+|+.
T Consensus 2 ~v~InG--~~~~fLvDTGA~~tii~~~~a~---~~-----~~~--------~~~~~v~gagG~~~~~v~~~~~~v~vg~~ 63 (86)
T cd06095 2 TITVEG--VPIVFLVDTGATHSVLKSDLGP---KQ-----ELS--------TTSVLIRGVSGQSQQPVTTYRTLVDLGGH 63 (86)
T ss_pred EEEECC--EEEEEEEECCCCeEEECHHHhh---hc-----cCC--------CCcEEEEeCCCcccccEEEeeeEEEECCE
Confidence 345554 8999999999999999765543 11 000 02223333333321111 123 6999999
Q ss_pred EeeeeEEEEEEeeCCccccccccceeeeccc
Q 010696 161 IIKDQEFVEVTKEGLLPFLALQFDGILGLGF 191 (503)
Q Consensus 161 ~i~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~ 191 (503)
...++ |...... .++|||+.+
T Consensus 64 ~~~~~-~~v~~~~---------~~~lLG~df 84 (86)
T cd06095 64 TVSHS-FLVVPNC---------PDPLLGRDL 84 (86)
T ss_pred EEEEE-EEEEcCC---------CCcEechhh
Confidence 98864 4444221 278999864
No 39
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=91.15 E-value=0.65 Score=40.64 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=24.6
Q ss_pred eEEeCHhhhcceEEEEeCCCCeEEEEe
Q 010696 475 LWVLGDMFLRAYHTVFDFGNLQIGFAE 501 (503)
Q Consensus 475 ~~ILG~~Fl~~~y~vfD~~~~riGfa~ 501 (503)
..|||.++|+.+...-|..+++|-|-.
T Consensus 105 DvILGm~WL~~~~~~IDw~~k~v~f~~ 131 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWATKTVTFNS 131 (135)
T ss_pred eeEeccchHHhCCCEEEccCCEEEEeC
Confidence 469999999999999999999998854
No 40
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=86.04 E-value=1.1 Score=34.10 Aligned_cols=37 Identities=43% Similarity=0.729 Sum_probs=35.3
Q ss_pred cchhhhHHHHHHHHHHhhhhhHHHHHHHHhhhhccCC
Q 010696 376 LCAFCEMIVFWIQMQLKQQKTKEAIFKYADKLCEVLP 412 (503)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 412 (503)
.|..|+.++..++..+..+.+++.+.+.+.++|..++
T Consensus 2 ~C~~C~~~v~~~~~~~~~~~~~~~i~~~~~~~C~~~~ 38 (76)
T smart00741 2 LCELCEDVVKQLENLLKDNKTEEEIKKALEKVCKKLP 38 (76)
T ss_pred cChHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcC
Confidence 5999999999999999999999999999999999987
No 41
>PF07966 A1_Propeptide: A1 Propeptide ; InterPro: IPR012848 Most eukaryotic endopeptidases (MEROPS peptidase family A1) are synthesised with signal and propeptides. The animal pepsin-like endopeptidase propeptides form a distinct family of propeptides, which contain a conserved motif approximately 30 residues long. In pepsinogen A, the first 11 residues of the mature pepsin sequence are displaced by residues of the propeptide. The propeptide contains two helices that block the active site cleft, in particular the conserved Asp11 residue, in pepsin, hydrogen bonds to a conserved Arg residue in the propeptide. This hydrogen bond stabilises the propeptide conformation and is probably responsible for triggering the conversion of pepsinogen to pepsin under acidic conditions [, ]. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1AVF_Q 1HTR_P 3PSG_A 2PSG_A 3VCM_Q 1TZS_P.
Probab=85.03 E-value=0.8 Score=28.59 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=15.4
Q ss_pred eEEEeeeeeccchhhHHHhcccc
Q 010696 32 LLRIQLKKRQLGINTINAARLIT 54 (503)
Q Consensus 32 ~~~ipL~~~~~~~~~~~~~~~~~ 54 (503)
++||||+|.++.|+.+++.+.+.
T Consensus 1 l~rIPL~K~kS~R~~L~e~g~~~ 23 (29)
T PF07966_consen 1 LVRIPLKKFKSMRETLREKGTLE 23 (29)
T ss_dssp -EEEEEEE---HHHHHHHTT-HH
T ss_pred CEEEeccCCchHHHHHHHcCchH
Confidence 47999999999999998877553
No 42
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=84.55 E-value=5.4 Score=33.29 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.2
Q ss_pred eEEeCHhhhcceEEEEeCCCCeE
Q 010696 475 LWVLGDMFLRAYHTVFDFGNLQI 497 (503)
Q Consensus 475 ~~ILG~~Fl~~~y~vfD~~~~ri 497 (503)
..+||..||+++-.+.|+.++++
T Consensus 85 ~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 85 EPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred ccEecHHHHhhCCEEEehhhCcC
Confidence 56999999999999999988753
No 43
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=82.92 E-value=1.9 Score=33.09 Aligned_cols=34 Identities=21% Similarity=0.353 Sum_probs=29.6
Q ss_pred cCceEEEEEEecCCCceEEEEEcCCCCCeeEeCCCC
Q 010696 76 LDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKC 111 (503)
Q Consensus 76 ~~~~Y~~~i~iGtPpQ~~~v~~DTGSs~~wV~~~~C 111 (503)
..+.+++++.||. +.+..++|||++...|+...+
T Consensus 5 ~~g~~~v~~~I~g--~~~~alvDtGat~~fis~~~a 38 (72)
T PF13975_consen 5 DPGLMYVPVSIGG--VQVKALVDTGATHNFISESLA 38 (72)
T ss_pred cCCEEEEEEEECC--EEEEEEEeCCCcceecCHHHH
Confidence 3678999999998 999999999999999876544
No 44
>PF13650 Asp_protease_2: Aspartyl protease
Probab=80.92 E-value=2.1 Score=33.68 Aligned_cols=29 Identities=10% Similarity=0.331 Sum_probs=23.8
Q ss_pred EEEcCeEeeeccCCceEEEccCccCcccCHHHHHHH
Q 010696 265 ILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQI 300 (503)
Q Consensus 265 i~v~~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l 300 (503)
+.|||+++ .+++|||++.+.++++.++++
T Consensus 3 v~vng~~~-------~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPV-------RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEE-------EEEEcCCCCcEEECHHHHHHc
Confidence 56777655 399999999999999888766
No 45
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=78.46 E-value=3.6 Score=31.55 Aligned_cols=29 Identities=14% Similarity=0.236 Sum_probs=24.5
Q ss_pred EEEcCeEeeeccCCceEEEccCccCcccCHHHHHHH
Q 010696 265 ILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQI 300 (503)
Q Consensus 265 i~v~~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l 300 (503)
+.|++..+. +++|||++-.+++.+..+.+
T Consensus 13 ~~I~g~~~~-------alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQVK-------ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEEE-------EEEeCCCcceecCHHHHHHh
Confidence 567776653 99999999999999988877
No 46
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=77.41 E-value=3.3 Score=33.19 Aligned_cols=30 Identities=13% Similarity=0.262 Sum_probs=25.3
Q ss_pred eEEEcCeEeeeccCCceEEEccCccCcccCHHHHHHH
Q 010696 264 DILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQI 300 (503)
Q Consensus 264 ~i~v~~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l 300 (503)
.+.|||+.+. +++|||++...++.+.+.++
T Consensus 4 ~~~Ing~~i~-------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPLK-------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEEE-------EEEcCCcceEEeCHHHHHHh
Confidence 3677888764 89999999999999988765
No 47
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=76.32 E-value=11 Score=32.45 Aligned_cols=91 Identities=22% Similarity=0.308 Sum_probs=50.5
Q ss_pred CceEEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCcccccCCcccCCCCccccccceeEEEeecee--EEEEEEEEE
Q 010696 77 DAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIVPCKIHYGSGQ--ISGFFSQDN 154 (503)
Q Consensus 77 ~~~Y~~~i~iGtPpQ~~~v~~DTGSs~~wV~~~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~Yg~gs--~~G~~~~D~ 154 (503)
...+|++++|+. ++++..+|||...+-+.. .|. ..|+-...-|. ..-...+|-|. ..|.+..=.
T Consensus 22 v~mLyI~~~ing--~~vkA~VDtGAQ~tims~-~~a--~r~gL~~lid~---------r~~g~a~GvG~~~i~G~Ih~~~ 87 (124)
T PF09668_consen 22 VSMLYINCKING--VPVKAFVDTGAQSTIMSK-SCA--ERCGLMRLIDK---------RFAGVAKGVGTQKILGRIHSVQ 87 (124)
T ss_dssp ----EEEEEETT--EEEEEEEETT-SS-EEEH-HHH--HHTTGGGGEEG---------GG-EE-------EEEEEEEEEE
T ss_pred cceEEEEEEECC--EEEEEEEeCCCCccccCH-HHH--HHcCChhhccc---------cccccccCCCcCceeEEEEEEE
Confidence 458999999998 999999999999988753 332 25553222221 11123444454 679888889
Q ss_pred EEECCeEeeeeEEEEEEeeCCccccccccceeeecc
Q 010696 155 VKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLG 190 (503)
Q Consensus 155 v~lg~~~i~~~~Fg~~~~~~~~~~~~~~~dGIlGLg 190 (503)
+.+|+..++ ..|-+.. ....+=+|||-
T Consensus 88 l~ig~~~~~-~s~~Vle--------~~~~d~llGld 114 (124)
T PF09668_consen 88 LKIGGLFFP-CSFTVLE--------DQDVDLLLGLD 114 (124)
T ss_dssp EEETTEEEE-EEEEEET--------TSSSSEEEEHH
T ss_pred EEECCEEEE-EEEEEeC--------CCCcceeeeHH
Confidence 999986665 3443332 12235577764
No 48
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=75.26 E-value=4.1 Score=33.12 Aligned_cols=29 Identities=17% Similarity=0.337 Sum_probs=23.4
Q ss_pred EEEEEecCCCceEEEEEcCCCCCeeEeCCCC
Q 010696 81 YGEIGIGSPPQSFSVVFDTGSSNLWVPSSKC 111 (503)
Q Consensus 81 ~~~i~iGtPpQ~~~v~~DTGSs~~wV~~~~C 111 (503)
+.+|.|.. +++++++||||+.+-++...+
T Consensus 7 ~i~v~i~g--~~i~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 7 YITVKING--KKIKALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEEEETT--EEEEEEEETTBSSEEESSGGS
T ss_pred eEEEeECC--EEEEEEEecCCCcceeccccc
Confidence 45677776 799999999999998876544
No 49
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=71.57 E-value=5.9 Score=31.47 Aligned_cols=30 Identities=17% Similarity=0.308 Sum_probs=23.5
Q ss_pred eEEEcCeEeeeccCCceEEEccCccCcccCHHHHHHH
Q 010696 264 DILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQI 300 (503)
Q Consensus 264 ~i~v~~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l 300 (503)
.+.+|++.+ .+++|||++.++++.+..+++
T Consensus 6 ~v~i~~~~~-------~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 6 PVTINGQPV-------RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCEEE-------EEEEECCCCcEEcCHHHHHHc
Confidence 356676655 389999999999999877655
No 50
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=71.41 E-value=27 Score=31.46 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=20.8
Q ss_pred CCceEEEccCccCcccCHHHHHHHH
Q 010696 277 DGCTAILDSGTSVLAGPTTVVAQIN 301 (503)
Q Consensus 277 ~~~~aiiDTGTt~i~lP~~~~~~l~ 301 (503)
....+++|||++..++..++.+.|.
T Consensus 44 t~i~vLfDSGSPTSfIr~di~~kL~ 68 (177)
T PF12384_consen 44 TPIKVLFDSGSPTSFIRSDIVEKLE 68 (177)
T ss_pred cEEEEEEeCCCccceeehhhHHhhC
Confidence 3456999999999999999887763
No 51
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=69.76 E-value=5.5 Score=31.64 Aligned_cols=29 Identities=14% Similarity=0.156 Sum_probs=24.4
Q ss_pred EEEcCeEeeeccCCceEEEccCccCcccCHHHHHHH
Q 010696 265 ILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQI 300 (503)
Q Consensus 265 i~v~~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l 300 (503)
+.|||..+. +++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~~-------fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV-------FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE-------EEEECCCCeEEECHHHhhhc
Confidence 567787664 89999999999999988775
No 52
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=68.81 E-value=2.7 Score=39.73 Aligned_cols=88 Identities=31% Similarity=0.464 Sum_probs=65.2
Q ss_pred ccceeeeecchhhhhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCccccchhhhHHHHHHHHHHh
Q 010696 313 QCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVFWIQMQLK 392 (503)
Q Consensus 313 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (503)
.|+..++.|...|...+.++.+|..+|...++|+-. ......+... .-....|.-|...+.++..-+.
T Consensus 78 ~C~~fv~~y~~~ii~~l~~~~~P~~vC~~l~lC~~~------~~~~~~~~~~------~~~~~~C~~C~~~V~~~~~~l~ 145 (218)
T KOG1340|consen 78 ECLSFVDSYLDPIIKELESGTAPEDVCKKLNLCSAS------AGPVSEVFAS------QPAAGECELCRETVTEADTKLQ 145 (218)
T ss_pred HHHHHHHHhhhHHHHHHHhccCHHHHHHHhccCCcc------cchhhhhhhh------cccccccHHHHHHHHHHHHhcc
Confidence 799999999999999999999999999999999741 0111111111 1125679999999999999998
Q ss_pred h-hhhHHHHHHHHhhhhccCC
Q 010696 393 Q-QKTKEAIFKYADKLCEVLP 412 (503)
Q Consensus 393 ~-~~~~~~~~~~~~~~c~~~~ 412 (503)
. +.++..+-....+.|..++
T Consensus 146 d~~~~k~~~~~~~~~~ck~l~ 166 (218)
T KOG1340|consen 146 DKPKTKGKIVSLLLKSCKSLP 166 (218)
T ss_pred cchhHHHHHHHHHHhhccCCc
Confidence 8 6666666666666665444
No 53
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=62.85 E-value=49 Score=27.47 Aligned_cols=66 Identities=15% Similarity=0.236 Sum_probs=39.2
Q ss_pred EEEEecCCCc----eEEEEEcCCCCCee-EeCCCCCCCcccccCCcccCCCCccccccceeEEEeecee-EEEEEEEEEE
Q 010696 82 GEIGIGSPPQ----SFSVVFDTGSSNLW-VPSSKCLFSISCYLHSRYRARLSRTYTKIVPCKIHYGSGQ-ISGFFSQDNV 155 (503)
Q Consensus 82 ~~i~iGtPpQ----~~~v~~DTGSs~~w-V~~~~C~~~~~C~~~~~y~p~~SsT~~~~~~~~~~Yg~gs-~~G~~~~D~v 155 (503)
+++.|+.|.| ++++++|||.+..- ++...-. .-...+. ......-++|. ..-....+++
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~~~a~-------~lgl~~~--------~~~~~~tA~G~~~~~~v~~~~v 66 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPPDIVN-------KLGLPEL--------DQRRVYLADGREVLTDVAKASI 66 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCHHHHH-------HcCCCcc--------cCcEEEecCCcEEEEEEEEEEE
Confidence 5788888733 67899999998765 5422111 0011111 11234445664 4555778999
Q ss_pred EECCeEe
Q 010696 156 KIGDMII 162 (503)
Q Consensus 156 ~lg~~~i 162 (503)
.+++...
T Consensus 67 ~igg~~~ 73 (107)
T TIGR03698 67 IINGLEI 73 (107)
T ss_pred EECCEEE
Confidence 9998765
No 54
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=58.76 E-value=20 Score=33.52 Aligned_cols=50 Identities=22% Similarity=0.331 Sum_probs=30.9
Q ss_pred CCCeEEEEECCEEEEeCcccceEeeccCcceeEEEeeEeccCCCCCCCeEEeCHhhhcceEEEEeCCCCeEEE
Q 010696 427 SMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPLWVLGDMFLRAYHTVFDFGNLQIGF 499 (503)
Q Consensus 427 ~~P~i~f~~~g~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILG~~Fl~~~y~vfD~~~~riGf 499 (503)
..+.+.+.++|..|.+|- ++ .. ..+-..|||.+|+|.|+=....+ .+|-|
T Consensus 66 ~~~~~~i~I~~~~F~IP~--------------iY----q~----~~g~d~IlG~NF~r~y~Pfiq~~-~~I~f 115 (201)
T PF02160_consen 66 KAKNGKIQIADKIFRIPT--------------IY----QQ----ESGIDIILGNNFLRLYEPFIQTE-DRIQF 115 (201)
T ss_pred EecCceEEEccEEEeccE--------------EE----Ee----cCCCCEEecchHHHhcCCcEEEc-cEEEE
Confidence 345677777777777742 22 11 12346899999999887555543 34555
No 55
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=57.66 E-value=8.5 Score=31.18 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=21.6
Q ss_pred eEEEcCeEeeeccCCceEEEccCccCcccCHHHH
Q 010696 264 DILIENSSTGFCEDGCTAILDSGTSVLAGPTTVV 297 (503)
Q Consensus 264 ~i~v~~~~~~~~~~~~~aiiDTGTt~i~lP~~~~ 297 (503)
.+.++++.+. ++||||+..+.+|...+
T Consensus 9 ~v~i~g~~i~-------~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 9 TVKINGKKIK-------ALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEETTEEEE-------EEEETTBSSEEESSGGS
T ss_pred EEeECCEEEE-------EEEecCCCcceeccccc
Confidence 4566777664 99999999999998754
No 56
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=57.00 E-value=14 Score=29.66 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=21.6
Q ss_pred EEEecCCCceEEEEEcCCCCCeeEeCCCC
Q 010696 83 EIGIGSPPQSFSVVFDTGSSNLWVPSSKC 111 (503)
Q Consensus 83 ~i~iGtPpQ~~~v~~DTGSs~~wV~~~~C 111 (503)
.+.|+. |.+++++|||++++-+.....
T Consensus 2 ~~~i~g--~~~~~llDTGAd~Tvi~~~~~ 28 (87)
T cd05482 2 TLYING--KLFEGLLDTGADVSIIAENDW 28 (87)
T ss_pred EEEECC--EEEEEEEccCCCCeEEccccc
Confidence 356664 999999999999999975443
No 57
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=55.84 E-value=84 Score=25.32 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=17.7
Q ss_pred cCCceEEEccCccCcccCHHHH
Q 010696 276 EDGCTAILDSGTSVLAGPTTVV 297 (503)
Q Consensus 276 ~~~~~aiiDTGTt~i~lP~~~~ 297 (503)
.++...+||||+....+|....
T Consensus 7 ~s~~~fLVDTGA~vSviP~~~~ 28 (89)
T cd06094 7 TSGLRFLVDTGAAVSVLPASST 28 (89)
T ss_pred CCCcEEEEeCCCceEeeccccc
Confidence 3566789999999999997643
No 58
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=51.77 E-value=11 Score=30.88 Aligned_cols=13 Identities=23% Similarity=0.094 Sum_probs=6.5
Q ss_pred CCchhhHHHHHHH
Q 010696 1 MGIKFLLAAICMW 13 (503)
Q Consensus 1 M~~~~~~~~~~~~ 13 (503)
|+.+.++|+.+++
T Consensus 1 MaSK~~llL~l~L 13 (95)
T PF07172_consen 1 MASKAFLLLGLLL 13 (95)
T ss_pred CchhHHHHHHHHH
Confidence 8855544443333
No 59
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=51.75 E-value=2.8 Score=31.76 Aligned_cols=36 Identities=44% Similarity=0.902 Sum_probs=32.5
Q ss_pred cccccceeeeecchhhhhhhhcCCCCCcccccCcce
Q 010696 310 VSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLC 345 (503)
Q Consensus 310 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 345 (503)
....|+.+++.|...+.+.+.....|..+|..++.|
T Consensus 41 ~~~~C~~~v~~~~~~ii~~i~~~~~p~~iC~~l~~C 76 (76)
T smart00741 41 LSDQCKEFVDQYGPEIIDLLEQGLDPKDVCQKLGLC 76 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCC
Confidence 456699999999999999999999999999998877
No 60
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=48.88 E-value=20 Score=30.76 Aligned_cols=29 Identities=14% Similarity=0.176 Sum_probs=22.7
Q ss_pred EEEcCeEeeeccCCceEEEccCccCcccCHHHHHHH
Q 010696 265 ILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQI 300 (503)
Q Consensus 265 i~v~~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l 300 (503)
+++||..+. |+||||+..+.++....+++
T Consensus 29 ~~ing~~vk-------A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 29 CKINGVPVK-------AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEETTEEEE-------EEEETT-SS-EEEHHHHHHT
T ss_pred EEECCEEEE-------EEEeCCCCccccCHHHHHHc
Confidence 567888764 99999999999999988774
No 61
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=48.26 E-value=19 Score=29.10 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=19.3
Q ss_pred eEEEccCccCcccCHHHHHHHH
Q 010696 280 TAILDSGTSVLAGPTTVVAQIN 301 (503)
Q Consensus 280 ~aiiDTGTt~i~lP~~~~~~l~ 301 (503)
.+.+|||++...+|...+.++-
T Consensus 12 ~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 12 KFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEecCCEEEeccHHHHhhhc
Confidence 4899999999999999887764
No 62
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=46.58 E-value=45 Score=31.20 Aligned_cols=30 Identities=10% Similarity=0.180 Sum_probs=25.5
Q ss_pred eEEEcCeEeeeccCCceEEEccCccCcccCHHHHHHH
Q 010696 264 DILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQI 300 (503)
Q Consensus 264 ~i~v~~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l 300 (503)
...|||+.+. .++|||.|.+.++.+..+.+
T Consensus 109 ~~~VNGk~v~-------fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 109 NGRVNGKKVD-------FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred EEEECCEEEE-------EEEecCcceeecCHHHHHHh
Confidence 3578888875 89999999999999987765
No 63
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=43.69 E-value=29 Score=31.21 Aligned_cols=43 Identities=16% Similarity=0.337 Sum_probs=27.3
Q ss_pred ceeEeceecc---CceEEEEEEecCCCceEEEEEcCCCCCeeEeCC
Q 010696 67 ADVVYLNNYL---DAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSS 109 (503)
Q Consensus 67 ~~~~~l~~~~---~~~Y~~~i~iGtPpQ~~~v~~DTGSs~~wV~~~ 109 (503)
....|+..+. ...=...+.++.-..+++++|||||..-++...
T Consensus 17 ~~~~PIV~~~~~Pevg~T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 17 ITTCPIVHYIAIPEVGKTAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred eeeeeeEEEeeccccCcEEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 3445555531 122233445555558999999999999888754
No 64
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=33.00 E-value=27 Score=29.86 Aligned_cols=21 Identities=24% Similarity=0.512 Sum_probs=18.7
Q ss_pred EEEccCcc-CcccCHHHHHHHH
Q 010696 281 AILDSGTS-VLAGPTTVVAQIN 301 (503)
Q Consensus 281 aiiDTGTt-~i~lP~~~~~~l~ 301 (503)
.++|||.+ ++.+|..+++++.
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~~ 50 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKLG 50 (125)
T ss_pred eEEecCCceeEEeCHHHHHhcC
Confidence 58999999 9999999998764
No 65
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=32.40 E-value=10 Score=35.97 Aligned_cols=44 Identities=30% Similarity=0.624 Sum_probs=38.5
Q ss_pred HhCCccccccccceeeeecchhhhhhhhcCCCCCcccccCccee
Q 010696 303 AIGAEGIVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCV 346 (503)
Q Consensus 303 ~l~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 346 (503)
..+..+++...|+.++.+|...|...+...+.|..+|.+++.|+
T Consensus 161 ~ck~l~~~~~~Ck~fV~~y~p~~i~~l~~~~~p~~vC~~l~~C~ 204 (218)
T KOG1340|consen 161 SCKSLPNYEQKCKQFVHEYGPQLITLLEEGLDPHDVCTALGACP 204 (218)
T ss_pred hccCCccchhHHHHHHHHhccHHHHHHHHhhCchhHHHHhhcCC
Confidence 33445566667999999999999999999999999999999998
No 66
>PRK02710 plastocyanin; Provisional
Probab=24.12 E-value=1.1e+02 Score=25.88 Aligned_cols=21 Identities=10% Similarity=0.028 Sum_probs=10.8
Q ss_pred CCchhhHHHHHHHHHHHHHhc
Q 010696 1 MGIKFLLAAICMWVCPCILAS 21 (503)
Q Consensus 1 M~~~~~~~~~~~~~~~~~~~~ 21 (503)
|..++++++..++++++.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (119)
T PRK02710 1 MAKRLRSIAAALVAVVSSFGL 21 (119)
T ss_pred CchhHHHHHHHHHHHHHHHHh
Confidence 555555555555554444443
No 67
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=21.65 E-value=1.1e+02 Score=26.53 Aligned_cols=30 Identities=27% Similarity=0.368 Sum_probs=25.3
Q ss_pred CceEEEEEEecCCCceEEEEEcCCCCCeeEeC
Q 010696 77 DAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPS 108 (503)
Q Consensus 77 ~~~Y~~~i~iGtPpQ~~~v~~DTGSs~~wV~~ 108 (503)
+..-.+.+.|.+ ++..+++|+|++..+|..
T Consensus 19 ~~vi~g~~~I~~--~~~~vLiDSGAThsFIs~ 48 (135)
T PF08284_consen 19 PDVITGTFLINS--IPASVLIDSGATHSFISS 48 (135)
T ss_pred CCeEEEEEEecc--EEEEEEEecCCCcEEccH
Confidence 346778888988 999999999999998854
No 68
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=20.86 E-value=1.6e+02 Score=21.33 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=17.8
Q ss_pred eEEEccCccCcccCHHHHHHH
Q 010696 280 TAILDSGTSVLAGPTTVVAQI 300 (503)
Q Consensus 280 ~aiiDTGTt~i~lP~~~~~~l 300 (503)
.+++|||++...+..+.++..
T Consensus 11 ~~liDtgs~~~~~~~~~~~~~ 31 (92)
T cd00303 11 RALVDSGASVNFISESLAKKL 31 (92)
T ss_pred EEEEcCCCcccccCHHHHHHc
Confidence 489999999999998877653
No 69
>cd05480 NRIP_C NRIP_C; putative nuclear receptor interacting protein. Proteins in this family have been described as probable nuclear receptor interacting proteins. The C-terminal domain of this family is homologous to the retroviral aspartyl protease domain. The domain is structurally related to one lobe of the pepsin molecule. The conserved active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=20.62 E-value=1.3e+02 Score=24.89 Aligned_cols=28 Identities=11% Similarity=0.154 Sum_probs=22.3
Q ss_pred EEcCeEeeeccCCceEEEccCccCcccCHHHHHHH
Q 010696 266 LIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQI 300 (503)
Q Consensus 266 ~v~~~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l 300 (503)
++||..+. |.+|||+..+.++..-.++.
T Consensus 4 k~nG~~vk-------AfVDsGaQ~timS~~caerc 31 (103)
T cd05480 4 QCAGKELR-------ALVDTGCQYNLISAACLDRL 31 (103)
T ss_pred eECCEEEE-------EEEecCCchhhcCHHHHHHc
Confidence 45666654 99999999999998877654
Done!