Query 010700
Match_columns 503
No_of_seqs 215 out of 1981
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 03:34:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010700.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010700hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00044 multi-copper oxidase- 100.0 2E-100 4E-105 802.7 54.7 491 12-502 12-505 (596)
2 PLN02991 oxidoreductase 100.0 1.2E-99 3E-104 792.6 55.3 471 10-502 11-482 (543)
3 PLN02354 copper ion binding / 100.0 4.9E-98 1E-102 785.4 54.1 465 22-502 22-490 (552)
4 PLN02835 oxidoreductase 100.0 1.7E-97 4E-102 780.3 54.8 462 19-502 21-483 (539)
5 PLN02792 oxidoreductase 100.0 1.4E-97 3E-102 778.2 53.1 462 22-502 11-475 (536)
6 PLN02168 copper ion binding / 100.0 1.1E-96 2E-101 771.9 54.6 460 25-502 24-487 (545)
7 KOG1263 Multicopper oxidases [ 100.0 7.2E-91 1.6E-95 722.1 51.2 481 11-502 12-507 (563)
8 PLN02191 L-ascorbate oxidase 100.0 1.8E-88 4E-93 718.0 53.6 460 25-502 21-518 (574)
9 TIGR03389 laccase laccase, pla 100.0 2.6E-88 5.7E-93 717.2 54.2 465 25-502 1-491 (539)
10 PLN02604 oxidoreductase 100.0 3.9E-87 8.4E-92 709.6 55.6 474 12-502 9-518 (566)
11 TIGR03388 ascorbase L-ascorbat 100.0 1.7E-86 3.7E-91 702.8 52.4 459 27-503 1-496 (541)
12 TIGR03390 ascorbOXfungal L-asc 100.0 2.4E-85 5.2E-90 692.1 51.4 457 29-502 10-503 (538)
13 TIGR01480 copper_res_A copper- 100.0 2E-67 4.2E-72 554.9 46.3 262 28-314 46-352 (587)
14 PRK10965 multicopper oxidase; 100.0 2.6E-63 5.6E-68 520.1 42.2 246 27-293 45-301 (523)
15 PRK10883 FtsI repressor; Provi 100.0 7.1E-61 1.5E-65 497.6 40.4 240 29-290 47-295 (471)
16 TIGR02376 Cu_nitrite_red nitri 100.0 1.3E-48 2.9E-53 385.3 27.2 265 22-315 22-299 (311)
17 COG2132 SufI Putative multicop 100.0 2.5E-47 5.4E-52 398.2 37.3 370 40-502 46-420 (451)
18 PF07732 Cu-oxidase_3: Multico 100.0 1.5E-36 3.4E-41 256.1 11.8 116 33-148 1-117 (117)
19 PF00394 Cu-oxidase: Multicopp 100.0 2E-28 4.4E-33 219.7 16.0 154 159-314 1-159 (159)
20 TIGR03095 rusti_cyanin rusticy 99.8 3.4E-18 7.3E-23 149.8 13.0 103 41-145 36-148 (148)
21 PF07731 Cu-oxidase_2: Multico 99.7 2.3E-17 5E-22 144.7 4.6 79 424-502 28-106 (138)
22 TIGR01480 copper_res_A copper- 99.7 2.9E-16 6.4E-21 166.8 12.2 100 44-145 483-587 (587)
23 TIGR03096 nitroso_cyanin nitro 99.4 1.5E-12 3.3E-17 110.1 11.4 105 12-131 9-121 (135)
24 PRK10965 multicopper oxidase; 99.4 4.1E-11 8.9E-16 126.6 22.1 233 45-293 211-509 (523)
25 PRK10883 FtsI repressor; Provi 99.3 1.1E-10 2.4E-15 122.2 19.7 222 44-293 207-454 (471)
26 PLN02835 oxidoreductase 99.2 1.4E-09 3.1E-14 115.4 23.1 243 46-293 191-498 (539)
27 TIGR03389 laccase laccase, pla 99.2 4.2E-09 9.2E-14 112.6 23.3 246 47-295 167-508 (539)
28 COG2132 SufI Putative multicop 99.1 4.5E-09 9.7E-14 110.4 17.0 232 43-294 186-436 (451)
29 PLN02354 copper ion binding / 99.0 8E-08 1.7E-12 102.4 23.0 242 47-292 190-504 (552)
30 PLN02168 copper ion binding / 99.0 1.1E-07 2.3E-12 101.0 23.1 240 47-292 189-501 (545)
31 PLN02792 oxidoreductase 99.0 2E-07 4.3E-12 99.0 24.8 242 46-293 179-490 (536)
32 PF07731 Cu-oxidase_2: Multico 99.0 7.8E-10 1.7E-14 96.8 5.7 89 57-146 33-136 (138)
33 PLN02991 oxidoreductase 98.9 2.7E-07 5.8E-12 97.9 24.8 242 46-292 190-496 (543)
34 TIGR03388 ascorbase L-ascorbat 98.9 2.6E-08 5.7E-13 106.5 15.8 233 59-294 204-511 (541)
35 TIGR02376 Cu_nitrite_red nitri 98.9 7.3E-08 1.6E-12 95.7 16.6 80 189-293 47-127 (311)
36 PLN02604 oxidoreductase 98.8 1.1E-07 2.3E-12 102.2 17.9 232 58-294 224-534 (566)
37 TIGR03390 ascorbOXfungal L-asc 98.8 1.1E-07 2.4E-12 101.5 16.4 244 47-294 172-519 (538)
38 PRK02710 plastocyanin; Provisi 98.7 1.9E-07 4.1E-12 79.2 12.9 74 57-145 46-119 (119)
39 PF13473 Cupredoxin_1: Cupredo 98.7 6.8E-08 1.5E-12 80.0 7.3 99 13-144 6-104 (104)
40 PLN02191 L-ascorbate oxidase 98.6 1.4E-06 3.1E-11 93.5 18.5 241 50-294 218-534 (574)
41 PLN00044 multi-copper oxidase- 98.4 6.4E-06 1.4E-10 88.2 16.4 84 190-293 49-133 (596)
42 TIGR02656 cyanin_plasto plasto 98.4 1.7E-06 3.7E-11 70.9 8.2 82 57-145 16-99 (99)
43 PF00127 Copper-bind: Copper b 98.1 5E-06 1.1E-10 68.1 5.4 82 57-145 16-99 (99)
44 PRK02888 nitrous-oxide reducta 98.0 2E-05 4.3E-10 83.3 9.5 99 39-147 534-635 (635)
45 PF00394 Cu-oxidase: Multicopp 98.0 1.3E-05 2.8E-10 71.8 6.8 83 46-129 36-136 (159)
46 TIGR02657 amicyanin amicyanin. 97.9 5.2E-05 1.1E-09 59.9 7.9 74 57-145 10-83 (83)
47 PF06525 SoxE: Sulfocyanin (So 97.8 0.00026 5.6E-09 63.9 11.2 102 47-149 74-190 (196)
48 KOG1263 Multicopper oxidases [ 97.7 0.0018 3.9E-08 69.0 17.7 85 190-294 48-133 (563)
49 TIGR02375 pseudoazurin pseudoa 97.7 0.00033 7.1E-09 58.7 9.0 76 57-148 14-90 (116)
50 TIGR03094 sulfo_cyanin sulfocy 97.6 0.00047 1E-08 60.9 10.0 100 49-149 75-189 (195)
51 PF07732 Cu-oxidase_3: Multico 97.6 0.00011 2.5E-09 61.9 5.8 86 190-294 15-101 (117)
52 COG3794 PetE Plastocyanin [Ene 97.4 0.00088 1.9E-08 56.8 8.2 75 58-146 54-128 (128)
53 TIGR03102 halo_cynanin halocya 97.1 0.0026 5.7E-08 53.2 8.3 74 57-145 41-115 (115)
54 TIGR03095 rusti_cyanin rusticy 96.2 0.028 6.1E-07 49.4 8.4 86 188-292 40-133 (148)
55 TIGR03096 nitroso_cyanin nitro 95.8 0.038 8.3E-07 47.3 7.4 62 213-293 60-121 (135)
56 COG4454 Uncharacterized copper 95.8 0.068 1.5E-06 46.4 8.6 89 54-146 59-158 (158)
57 PRK10378 inactive ferrous ion 94.8 0.28 6E-06 49.7 11.0 78 54-148 40-119 (375)
58 PF13473 Cupredoxin_1: Cupredo 94.8 0.11 2.4E-06 42.6 6.9 61 213-292 34-94 (104)
59 PF00116 COX2: Cytochrome C ox 94.7 0.17 3.7E-06 42.8 7.9 74 57-144 45-119 (120)
60 TIGR02695 azurin azurin. Azuri 94.7 0.14 3.1E-06 43.0 7.1 86 57-143 15-124 (125)
61 TIGR02656 cyanin_plasto plasto 92.5 0.35 7.6E-06 39.3 5.9 70 213-291 16-85 (99)
62 PF06525 SoxE: Sulfocyanin (So 91.0 3.4 7.5E-05 37.7 10.9 90 190-294 74-173 (196)
63 COG1622 CyoA Heme/copper-type 89.1 1.4 3E-05 42.2 7.3 79 57-149 136-215 (247)
64 TIGR02866 CoxB cytochrome c ox 86.8 1.9 4.1E-05 40.1 6.5 78 57-148 116-194 (201)
65 COG4454 Uncharacterized copper 85.9 3.4 7.4E-05 36.1 7.1 77 213-294 62-144 (158)
66 PF00116 COX2: Cytochrome C ox 85.9 7.6 0.00017 32.7 9.2 61 213-293 45-105 (120)
67 PF12690 BsuPI: Intracellular 84.4 11 0.00025 29.3 8.9 66 224-290 4-82 (82)
68 TIGR03079 CH4_NH3mon_ox_B meth 82.7 11 0.00024 37.6 9.9 22 97-118 331-353 (399)
69 PRK02710 plastocyanin; Provisi 81.5 4.8 0.0001 33.9 6.2 60 213-291 46-105 (119)
70 PRK02888 nitrous-oxide reducta 80.4 5.1 0.00011 43.3 7.3 63 213-293 554-618 (635)
71 COG4263 NosZ Nitrous oxide red 77.7 3.4 7.4E-05 42.3 4.7 77 59-145 559-636 (637)
72 COG2967 ApaG Uncharacterized p 77.0 3.2 7E-05 34.3 3.5 55 69-123 33-95 (126)
73 PF00127 Copper-bind: Copper b 75.2 15 0.00032 29.7 7.1 66 212-292 15-86 (99)
74 TIGR02695 azurin azurin. Azuri 73.6 26 0.00057 29.6 8.2 80 213-292 15-112 (125)
75 PF12690 BsuPI: Intracellular 70.6 22 0.00048 27.7 6.8 57 59-126 17-80 (82)
76 COG1470 Predicted membrane pro 62.8 2E+02 0.0044 30.1 16.2 173 60-293 278-468 (513)
77 PF10633 NPCBM_assoc: NPCBM-as 62.7 55 0.0012 24.9 7.6 65 219-293 2-76 (78)
78 PRK10378 inactive ferrous ion 61.6 36 0.00079 34.7 8.1 65 211-292 41-105 (375)
79 PRK05461 apaG CO2+/MG2+ efflux 59.7 13 0.00028 31.7 3.8 21 95-115 66-86 (127)
80 PF05938 Self-incomp_S1: Plant 58.1 46 0.00099 27.3 6.9 71 69-148 2-72 (110)
81 PF05506 DUF756: Domain of unk 55.7 56 0.0012 25.7 6.8 63 57-127 8-73 (89)
82 PF01835 A2M_N: MG2 domain; I 54.8 46 0.001 26.5 6.3 69 218-293 11-86 (99)
83 PF07705 CARDB: CARDB; InterP 53.7 1.1E+02 0.0023 24.0 9.4 67 217-293 14-84 (101)
84 PF04744 Monooxygenase_B: Mono 50.8 17 0.00036 36.5 3.5 77 67-143 266-377 (381)
85 COG3794 PetE Plastocyanin [Ene 49.7 69 0.0015 27.3 6.6 63 213-293 53-115 (128)
86 PF07691 PA14: PA14 domain; I 49.2 1.1E+02 0.0023 26.0 8.2 64 215-283 53-123 (145)
87 PF11142 DUF2917: Protein of u 49.2 57 0.0012 24.0 5.3 46 216-273 2-47 (63)
88 PF04379 DUF525: Protein of un 48.3 9.7 0.00021 30.3 1.2 23 95-117 49-71 (90)
89 TIGR02866 CoxB cytochrome c ox 47.4 74 0.0016 29.4 7.2 60 214-293 117-176 (201)
90 MTH00047 COX2 cytochrome c oxi 44.9 1.2E+02 0.0027 27.8 8.1 76 59-148 117-193 (194)
91 MTH00140 COX2 cytochrome c oxi 44.6 82 0.0018 29.8 7.1 77 57-147 139-216 (228)
92 COG4633 Plastocyanin domain co 44.1 1.3E+02 0.0029 28.1 7.9 90 39-149 78-172 (272)
93 COG1188 Ribosome-associated he 42.9 18 0.00039 29.3 1.9 31 49-79 36-66 (100)
94 PRK13202 ureB urease subunit b 42.7 61 0.0013 26.3 4.9 63 59-123 12-88 (104)
95 PF14344 DUF4397: Domain of un 42.2 2E+02 0.0043 23.8 10.5 21 225-245 3-24 (122)
96 PF14481 Fimbrial_PilY2: Type 40.3 32 0.0007 27.9 3.0 82 1-86 1-96 (118)
97 PF04151 PPC: Bacterial pre-pe 36.0 1.6E+02 0.0035 21.7 6.3 34 214-256 5-38 (70)
98 COG1622 CyoA Heme/copper-type 35.3 1.5E+02 0.0032 28.5 7.3 60 214-293 137-196 (247)
99 PF10989 DUF2808: Protein of u 34.1 46 0.00099 29.1 3.4 28 102-129 96-126 (146)
100 smart00758 PA14 domain in bact 33.4 2.9E+02 0.0063 23.1 8.4 63 216-283 52-115 (136)
101 PF11614 FixG_C: IG-like fold 32.7 2E+02 0.0044 23.7 7.0 48 223-279 34-83 (118)
102 TIGR03094 sulfo_cyanin sulfocy 32.6 1.2E+02 0.0027 27.4 5.7 23 430-452 85-107 (195)
103 TIGR00192 urease_beta urease, 32.2 1.2E+02 0.0026 24.6 5.0 59 59-117 12-83 (101)
104 PF04379 DUF525: Protein of un 32.1 95 0.0021 24.7 4.5 49 223-274 15-67 (90)
105 PRK13203 ureB urease subunit b 31.6 1.2E+02 0.0026 24.6 5.0 64 59-124 12-88 (102)
106 cd00918 Der-p2_like Several gr 31.4 1.9E+02 0.0042 24.2 6.6 61 58-118 20-88 (120)
107 TIGR02375 pseudoazurin pseudoa 31.1 1.3E+02 0.0029 25.1 5.5 19 213-231 14-32 (116)
108 TIGR03102 halo_cynanin halocya 30.3 2.1E+02 0.0045 23.9 6.5 63 213-293 41-103 (115)
109 PRK05461 apaG CO2+/MG2+ efflux 30.0 1.2E+02 0.0026 25.8 5.1 48 223-273 32-83 (127)
110 cd00407 Urease_beta Urease bet 28.7 1.6E+02 0.0034 24.0 5.2 63 59-123 12-87 (101)
111 PF14478 DUF4430: Domain of un 28.4 44 0.00096 24.8 2.0 27 44-70 38-67 (68)
112 PF14451 Ub-Mut7C: Mut7-C ubiq 28.3 47 0.001 25.9 2.1 27 45-71 48-74 (81)
113 TIGR02657 amicyanin amicyanin. 27.9 1.9E+02 0.0041 22.2 5.6 63 213-292 10-72 (83)
114 MTH00047 COX2 cytochrome c oxi 25.0 2.9E+02 0.0064 25.4 7.1 59 214-292 116-174 (194)
115 TIGR02988 YaaA_near_RecF S4 do 24.3 42 0.00091 24.0 1.2 22 49-70 36-58 (59)
116 cd00916 Npc2_like Niemann-Pick 23.9 3.1E+02 0.0067 23.0 6.6 60 59-118 23-92 (123)
117 PRK13205 ureB urease subunit b 23.5 1.9E+02 0.0041 25.3 5.0 63 59-123 12-87 (162)
118 COG3354 FlaG Putative archaeal 23.4 2.9E+02 0.0063 24.0 6.1 54 222-279 70-131 (154)
119 PRK13201 ureB urease subunit b 23.4 2E+02 0.0043 24.6 5.0 64 59-124 12-88 (136)
120 PRK13198 ureB urease subunit b 22.9 1.9E+02 0.0041 25.3 5.0 63 59-123 40-115 (158)
121 PRK13204 ureB urease subunit b 22.7 1.9E+02 0.0042 25.3 5.0 64 59-124 35-111 (159)
122 KOG4680 Uncharacterized conser 22.2 5.2E+02 0.011 22.4 9.0 82 28-124 34-121 (153)
123 PTZ00047 cytochrome c oxidase 21.9 4.4E+02 0.0094 23.5 7.2 42 105-147 107-149 (162)
124 KOG1554 COP9 signalosome, subu 21.5 63 0.0014 31.3 2.0 27 123-149 134-175 (347)
125 PF09394 Inhibitor_I42: Chagas 20.9 1.5E+02 0.0033 23.1 3.9 57 60-124 1-67 (92)
126 PRK15249 fimbrial chaperone pr 20.6 6.3E+02 0.014 24.2 8.8 18 57-74 85-102 (253)
127 PF07172 GRP: Glycine rich pro 20.5 80 0.0017 25.4 2.2 23 1-24 1-25 (95)
128 PRK15188 fimbrial chaperone pr 20.2 6.3E+02 0.014 23.9 8.5 18 57-74 79-96 (228)
No 1
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=1.9e-100 Score=802.71 Aligned_cols=491 Identities=66% Similarity=1.154 Sum_probs=388.1
Q ss_pred HHHHHHHhhhhcCCceEEEEEEEEEEEeCCCC--ceeEEEEEcCCCCCceEEEecCCEEEEEEEeCCCCCeeEEEccCCC
Q 010700 12 IHIALLASLCSAADLFVYFDFEVSYITASPLG--VPQQVIAINGKFPGPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQ 89 (503)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~dG--~~~~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~ 89 (503)
+.+++.-+.+.|++++++|+|+|++..+++|| .++.+++|||++|||+|++++||+|+|+|+|+|+++++|||||++|
T Consensus 12 ~~~~~~~~~~~~~~~~~~y~~~v~~~~~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~~~ttIHWHGl~q 91 (596)
T PLN00044 12 AALALAPAPAGAGDPYAYYDWEVSYVSAAPLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNALDEPLLLTWHGVQQ 91 (596)
T ss_pred HHHhcCCCccccCCceEEEEEEEEEEEEccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeCCCCCccEEECCccC
Confidence 33333334466778899999999999999999 5568999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEEEEeCCCceeeEEccCchhhhhcCceeeEEEEeCCCCCCCCCCCC-CceEEEEeee
Q 010700 90 RRSSWQDGLLGTNCPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFIINNRAIIPIPFDTPD-GDITILIGDW 168 (503)
Q Consensus 90 ~~~~~~DG~~~~q~~i~PG~~~~y~f~~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d-~e~~l~l~d~ 168 (503)
+.++|+||++++||||+||++|+|+|++++++||||||||.+.|+++||+|+|||++++..+.|+...+ +|.+|+|+||
T Consensus 92 ~~t~w~DGv~~TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~~~~~P~~~~~~~e~~i~l~DW 171 (596)
T PLN00044 92 RKSAWQDGVGGTNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVIPIPFGFPDGGDITLFIADW 171 (596)
T ss_pred CCCccccCCCCCcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcccccccccCCcccceEEEeccc
Confidence 999999999889999999999999999977899999999999999999999999999876666665444 7999999999
Q ss_pred eeCCHHHHHHHhhcCCCCCCCCeEEECCcCCCCCCCCCCCCCCCceeEEEeCCcEEEEEEeEeCCCCeeeEEEeCCcEEE
Q 010700 169 YTRNHTALRKTLDAGKGLGMPDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLL 248 (503)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~v 248 (503)
++....++...+..+...+.++.++|||++.+.++|+.....+..++++|++||+|||||||++..+.+.|+|+||+|+|
T Consensus 172 ~~~~~~~~~~~l~~g~~~~~~d~~lING~g~~~~n~~~~~~~~~~~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtV 251 (596)
T PLN00044 172 YARDHRALRRALDAGDLLGAPDGVLINAFGPYQYNDSLVPPGITYERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLL 251 (596)
T ss_pred ccCCHHHHHHHHhcCCCCCCCCceEEcccCccccCCccccCCCccceEEECCCCEEEEEEEEccCCceEEEEECCCEEEE
Confidence 99987776655666655567899999999876544432222344578999999999999999999999999999999999
Q ss_pred EEecCCccceeeecEEEEcCCceEEEEEEeCCCCCcceEEEEeeeccccccCCCcceEEEEEecCCCCCCCCCCCCCCCC
Q 010700 249 AETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASARFVNESQWKRVTGVAILHYTNSKGKARGPLPEGPND 328 (503)
Q Consensus 249 ia~DG~~~~p~~~d~v~l~pGeR~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~p~~ 328 (503)
|++||.+++|..+|.|.|++||||||+|+++++++++|||++...+..........+.|||+|.++....+.+.|..|..
T Consensus 252 Ia~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~~~~~~~~~~~~~~~AIl~Y~~~~~~~~~~~P~~p~~ 331 (596)
T PLN00044 252 VEAEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASARFVDAAVVDKLTGVAILHYSNSQGPASGPLPDAPDD 331 (596)
T ss_pred EEeCCcccCceeeeeEEEcCCceEEEEEECCCCCCCceEEEEecccccCccccCcceeEEEEECCCCCCCCCCCCCCCcc
Confidence 99999999999999999999999999999999765489999875422111123467889999988653222223332321
Q ss_pred CCCccccccccccccccCCCCCCCCCCCCCCCcCccceeEEEEEecCCCCccCCeEEEEecCccCCCCCCchhccccccc
Q 010700 329 EFDKTFSMNQARSIRWNVSASGARPNPQGSFRYGSINVTEVYVLRNKPPEMIDGKRRATLSGISFVNPSTPIRLADWFKV 408 (503)
Q Consensus 329 ~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~iN~~s~~~~~~P~l~~~~~~~ 408 (503)
.++..++.++...++.++.+....++|+.........+++++.+.........++.+|+|||++|..|++|+|++.+++.
T Consensus 332 ~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~Nnvsf~~p~~p~L~a~~~~~ 411 (596)
T PLN00044 332 QYDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLLQSMAPELIDGKLRATLNEISYIAPSTPLMLAQIFNV 411 (596)
T ss_pred cCCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeeeccccccccCCeEEEEECcccCCCCCCcchhhhhccC
Confidence 11333333333444444443333444443332222233333322211010112568899999999999999998887777
Q ss_pred cCccccCCCCCCCCCCCCcceEEEecCCCcEEEEEEeCCCCCCCceeecCCceEEEeeccCCCCCCCCCCCCCCCCCccc
Q 010700 409 KGAYKLDFPTKPVTGPPRMETSVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIART 488 (503)
Q Consensus 409 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~vdivi~N~~~~~HP~HLHGh~F~Vl~~g~g~~~~~~~~~~n~~~p~~RD 488 (503)
.+++..++++.|........+.++.++.|+||||||+|.....||||||||+||||++|.|.|++.....||++||++||
T Consensus 412 ~gv~~~~fp~~pp~~~~~~~t~v~~~~~n~~VeiV~qn~~~~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nPp~Rd 491 (596)
T PLN00044 412 PGVFKLDFPNHPMNRLPKLDTSIINGTYKGFMEIIFQNNATNVQSYHLDGYAFFVVGMDYGLWTDNSRGTYNKWDGVARS 491 (596)
T ss_pred CCcccCCCCCCCCccccccCceEEEcCCCCEEEEEEeCCCCCCCCeeEcCccEEEEeecCCCCCCCcccccccCCCCccc
Confidence 88887777665544334457888999999999999999877899999999999999999999998777789999999999
Q ss_pred eEEeCCCCcccCcc
Q 010700 489 TTQARRHLCSNRNY 502 (503)
Q Consensus 489 Tv~v~~~g~~~~~~ 502 (503)
||.||++||++|||
T Consensus 492 Tv~vp~~gW~aIRF 505 (596)
T PLN00044 492 TIQVFPGAWTAILV 505 (596)
T ss_pred eEEeCCCCeEEEEE
Confidence 99999999999998
No 2
>PLN02991 oxidoreductase
Probab=100.00 E-value=1.2e-99 Score=792.56 Aligned_cols=471 Identities=49% Similarity=0.902 Sum_probs=386.9
Q ss_pred HHHHHHHHHhhhhcCCceEEEEEEEEEEEeCCCCceeEEEEEcCCCCCceEEEecCCEEEEEEEeCCCCCeeEEEccCCC
Q 010700 10 LAIHIALLASLCSAADLFVYFDFEVSYITASPLGVPQQVIAINGKFPGPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQ 89 (503)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~dG~~~~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~ 89 (503)
+++.|.+|+++..+.+++++|+|+|++..+++||+++.+++|||++|||+|++++||+|+|+|+|+|+++++|||||++|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~vt~~~~~pdG~~r~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q 90 (543)
T PLN02991 11 MILGLLFLISFVAAEDPYRFFEWHVTYGNISPLGVAQQGILINGKFPGPDIISVTNDNLIINVFNHLDEPFLISWSGIRN 90 (543)
T ss_pred HHHHHHHHHhhhhccCceEEEEEEEEEEEeCCCCEEEEEEEEcCCCCCCcEEEECCCEEEEEecCCCCCCccEEECCccc
Confidence 34667777788888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEEEEeCCCceeeEEccCchhhhhcCceeeEEEEeCCCCCCCCCCCCCceEEEEeeee
Q 010700 90 RRSSWQDGLLGTNCPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFIINNRAIIPIPFDTPDGDITILIGDWY 169 (503)
Q Consensus 90 ~~~~~~DG~~~~q~~i~PG~~~~y~f~~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~ 169 (503)
..++|+||++++||||+||++|+|+|++++++||||||||.+.|+.+||+|+|||++++..+.|+..+|+|++|+|+||+
T Consensus 91 ~~~~~~DGv~~tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~d~~i~l~DW~ 170 (543)
T PLN02991 91 WRNSYQDGVYGTTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIPVPFPAPADDYTVLIGDWY 170 (543)
T ss_pred CCCccccCCCCCCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCcccCcccccccceeEEEeccee
Confidence 99999999988999999999999999997689999999999999999999999999987666667677899999999999
Q ss_pred eCCHHHHHHHhhcCCCCCCCCeEEECCcCCCCCCCCCCCCCCCceeEEEeCCcEEEEEEeEeCCCCeeeEEEeCCcEEEE
Q 010700 170 TRNHTALRKTLDAGKGLGMPDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLA 249 (503)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~vi 249 (503)
++....+...+..+...+++|.+||||++. .+++++++||+|||||||+|....+.|+|+||+|+||
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~d~~liNG~~~-------------~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVI 237 (543)
T PLN02991 171 KTNHKDLRAQLDNGGKLPLPDGILINGRGS-------------GATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLV 237 (543)
T ss_pred cCCHHHHHHHhhcCCCCCCCCEEEEccCCC-------------CceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEE
Confidence 998766655555555566889999999975 2679999999999999999999999999999999999
Q ss_pred EecCCccceeeecEEEEcCCceEEEEEEeCCCCCcceEEEEeeeccccccCCCcceEEEEEecCCCCCCCCCCCCCCCCC
Q 010700 250 ETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASARFVNESQWKRVTGVAILHYTNSKGKARGPLPEGPNDE 329 (503)
Q Consensus 250 a~DG~~~~p~~~d~v~l~pGeR~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~p~~~ 329 (503)
++||.+++|..++++.|++||||||+|+++++++ +|||++...+... ...+.|||+|+++....+.+.|..|.
T Consensus 238 a~DG~~~~p~~~~~l~i~~GQRydvlv~a~~~~~-~y~i~~~~~~~~~----~~~~~AIl~Y~g~~~~~~~~~p~~p~-- 310 (543)
T PLN02991 238 EVEGTHTIQTPFSSLDVHVGQSYSVLITADQPAK-DYYIVVSSRFTSK----ILITTGVLHYSNSAGPVSGPIPDGPI-- 310 (543)
T ss_pred EeCCccccceeeeEEEEcCCcEEEEEEECCCCCC-cEEEEEeeccCCC----CcceEEEEEeCCCCCCCCCCCCCCCc--
Confidence 9999999999999999999999999999999888 9999998754332 25678999999875322222332222
Q ss_pred CCccccccccccccccCCCCCCCCCCCCCCCcCccceeEEEEEecCCCCccCCeEEEEecCccCCCCCCchhcccccccc
Q 010700 330 FDKTFSMNQARSIRWNVSASGARPNPQGSFRYGSINVTEVYVLRNKPPEMIDGKRRATLSGISFVNPSTPIRLADWFKVK 409 (503)
Q Consensus 330 ~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~iN~~s~~~~~~P~l~~~~~~~~ 409 (503)
+..+..++....+..+.+....+.|..+.......+++++.+..... ..++..+|+|||.+|..|++|+|.+.+++++
T Consensus 311 -~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~iN~~s~~~p~~p~L~~~~~~~~ 388 (543)
T PLN02991 311 -QLSWSFDQARAIKTNLTASGPRPNPQGSYHYGKINITRTIRLANSAG-NIEGKQRYAVNSASFYPADTPLKLADYFKIA 388 (543)
T ss_pred -cccccccchhhhhhcccCCCCCCCCCccccccccccceeEEEeeccc-ccCceEEEEECCCccCCCCCChhhhhhhccc
Confidence 12222222222233444444444444333333334555555543211 1235678999999999999999988777677
Q ss_pred CccccC-CCCCCCCCCCCcceEEEecCCCcEEEEEEeCCCCCCCceeecCCceEEEeeccCCCCCCCCCCCCCCCCCccc
Q 010700 410 GAYKLD-FPTKPVTGPPRMETSVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIART 488 (503)
Q Consensus 410 ~~~~~~-~~~~p~~~~~~~~~~~~~~~~g~~vdivi~N~~~~~HP~HLHGh~F~Vl~~g~g~~~~~~~~~~n~~~p~~RD 488 (503)
+.+..+ +++.|.........+++.++.|++|||||+|.+...||||||||+||||++|.|.|++.....||++||++||
T Consensus 389 g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~nP~rRD 468 (543)
T PLN02991 389 GVYNPGSIPDQPTNGAIFPVTSVMQTDYKAFVEIVFENWEDIVQTWHLDGYSFYVVGMELGKWSAASRKVYNLNDAVSRC 468 (543)
T ss_pred CccccccccccCCCCccccCCcEEEcCCCCEEEEEEeCCCCCCCCeeeCCcceEEEEeCCCCCCcccccccCCCCCCccc
Confidence 777654 4554443333345678889999999999999988899999999999999999999987666789999999999
Q ss_pred eEEeCCCCcccCcc
Q 010700 489 TTQARRHLCSNRNY 502 (503)
Q Consensus 489 Tv~v~~~g~~~~~~ 502 (503)
|+.||++||++|||
T Consensus 469 Tv~vp~~Gw~vIRF 482 (543)
T PLN02991 469 TVQVYPRSWTAIYV 482 (543)
T ss_pred EEEECCCCEEEEEE
Confidence 99999999999998
No 3
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=4.9e-98 Score=785.43 Aligned_cols=465 Identities=51% Similarity=0.922 Sum_probs=373.2
Q ss_pred hcCCceEEEEEEEEEEEeCCCCceeEEEEEcCCCCCceEEEecCCEEEEEEEeCCCCCeeEEEccCCCCCCCCCCCCCCC
Q 010700 22 SAADLFVYFDFEVSYITASPLGVPQQVIAINGKFPGPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLGT 101 (503)
Q Consensus 22 ~~~~~~~~~~l~i~~~~~~~dG~~~~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DG~~~~ 101 (503)
.+.+.+++|+|+|++...++||+++.+++|||++|||+|++++||+|+|+|+|+|+++++|||||++|++++|+||+++|
T Consensus 22 ~~~~~~~~y~~~v~~~~~~pdG~~r~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~T 101 (552)
T PLN02354 22 RAEDPYFFFTWNVTYGTASPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPGT 101 (552)
T ss_pred hccccEEEEEEEEEEEEecCCCeEEEEEEECCCCcCCcEEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcCC
Confidence 33457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceEEEEEeCCCceeeEEccCchhhhhcCceeeEEEEeCCCCCCCCCCCCCceEEEEeeeeeCCHHHHHHHhh
Q 010700 102 NCPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFIINNRAIIPIPFDTPDGDITILIGDWYTRNHTALRKTLD 181 (503)
Q Consensus 102 q~~i~PG~~~~y~f~~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~~~~ 181 (503)
||||+||++|+|+|++.+++||||||||.+.|+++||+|+|||++++..+.+|+.+|+|++|+|+||+++....+...+.
T Consensus 102 QcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~ 181 (552)
T PLN02354 102 NCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLIPVPYADPEDDYTVLIGDWYTKSHTALKKFLD 181 (552)
T ss_pred cCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEEEcCCcCCCCCCCCcCceEEEEeeeeccCCHHHHHHHHh
Confidence 99999999999999986689999999999999999999999999987666677777899999999999998777666666
Q ss_pred cCCCCCCCCeEEECCcCCCCCCCCCCCCCCCceeEEEeCCcEEEEEEeEeCCCCeeeEEEeCCcEEEEEecCCccceeee
Q 010700 182 AGKGLGMPDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNY 261 (503)
Q Consensus 182 ~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~via~DG~~~~p~~~ 261 (503)
.+...+.++++||||+....| ....+.+++++||+|||||||+|....+.|+|+||+|+||++||.+++|..+
T Consensus 182 ~g~~~~~~d~~liNG~~~~~~-------~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa~DG~~v~p~~~ 254 (552)
T PLN02354 182 SGRTLGRPDGVLINGKSGKGD-------GKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVEMEGSHVLQNDY 254 (552)
T ss_pred cCCCCCCCCeEEEeCCcCCCC-------CCCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEEEeCCcccCCcce
Confidence 665556789999999975332 1234789999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCceEEEEEEeCCCCCcceEEEEeeeccccccCCCcceEEEEEecCCCCCCCCCCCCCCCCCCCcccccccccc
Q 010700 262 TSLDIHVGQSYSFLVTMDQNASTDYYIVASARFVNESQWKRVTGVAILHYTNSKGKARGPLPEGPNDEFDKTFSMNQARS 341 (503)
Q Consensus 262 d~v~l~pGeR~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~ 341 (503)
+.+.|++||||||+|++++++| +|||++...+... .....|||+|+++....+.+.|..+. +..+....+..
T Consensus 255 ~~l~i~~GqRydVlv~a~~~~g-~Y~i~a~~~~~~~----~~~~~ail~Y~g~~~~~~~~~p~~~~---~~~~~~~~~~~ 326 (552)
T PLN02354 255 DSLDVHVGQCFSVLVTANQAPK-DYYMVASTRFLKK----VLTTTGIIRYEGGKGPASPELPEAPV---GWAWSLNQFRS 326 (552)
T ss_pred eEEEEccCceEEEEEECCCCCC-cEEEEEeccccCC----CccEEEEEEECCCCCCCCCCCCCCCc---ccccchhhhhh
Confidence 9999999999999999998888 9999997543322 25678999998865322222222221 11112222223
Q ss_pred ccccCCCCCCCCCCCCCCCcCccceeEEEEEecCCCCccCCeEEEEecCccCCCCCCchhcccccccc-CccccC-CCCC
Q 010700 342 IRWNVSASGARPNPQGSFRYGSINVTEVYVLRNKPPEMIDGKRRATLSGISFVNPSTPIRLADWFKVK-GAYKLD-FPTK 419 (503)
Q Consensus 342 ~~~~l~~~~~~~~p~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~iN~~s~~~~~~P~l~~~~~~~~-~~~~~~-~~~~ 419 (503)
.+.++.+....+.|.........++++++.+...+. ..++..+|+|||++|..|++|+|.+.++++. +.++.+ +++.
T Consensus 327 ~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~~ 405 (552)
T PLN02354 327 FRWNLTASAARPNPQGSYHYGKINITRTIKLVNSAS-KVDGKLRYALNGVSHVDPETPLKLAEYFGVADKVFKYDTIKDN 405 (552)
T ss_pred hhhcccccccCCCCCCccccccccccceEEEecccc-cCCceEEEEECCccCCCCCCChHHhhhhcccCCccccCccccC
Confidence 333344333333332222222234555555543221 1235678999999999999999987654432 555433 2222
Q ss_pred C-C-CCCCCcceEEEecCCCcEEEEEEeCCCCCCCceeecCCceEEEeeccCCCCCCCCCCCCCCCCCccceEEeCCCCc
Q 010700 420 P-V-TGPPRMETSVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQARRHLC 497 (503)
Q Consensus 420 p-~-~~~~~~~~~~~~~~~g~~vdivi~N~~~~~HP~HLHGh~F~Vl~~g~g~~~~~~~~~~n~~~p~~RDTv~v~~~g~ 497 (503)
| . ....+.+.+++.++.|++|||+|+|.+...||||||||+||||++|.|.|++.....+|+.||++|||+.||++||
T Consensus 406 pp~~~~~~~~~~~v~~~~~~~~VeiVi~n~~~~~HP~HLHGh~F~Vlg~G~G~~~~~~~~~~nl~nP~rRDTv~vp~~Gw 485 (552)
T PLN02354 406 PPAKITKIKIQPNVLNITFRTFVEIIFENHEKSMQSWHLDGYSFFAVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKSW 485 (552)
T ss_pred CccccCccccCCeeEEcCCCCEEEEEEeCCCCCCCCCcCCCccEEEEeecCCCCCccccccCCcCCCCccceEEeCCCCe
Confidence 2 1 1234556788999999999999999988899999999999999999999987666689999999999999999999
Q ss_pred ccCcc
Q 010700 498 SNRNY 502 (503)
Q Consensus 498 ~~~~~ 502 (503)
++|||
T Consensus 486 ~vIRF 490 (552)
T PLN02354 486 AAILL 490 (552)
T ss_pred EEEEE
Confidence 99998
No 4
>PLN02835 oxidoreductase
Probab=100.00 E-value=1.7e-97 Score=780.33 Aligned_cols=462 Identities=51% Similarity=0.936 Sum_probs=374.8
Q ss_pred hhhhcCCceEEEEEEEEEEEeCCCCceeEEEEEcCCCCCceEEEecCCEEEEEEEeCCCCCeeEEEccCCCCCCCCCCCC
Q 010700 19 SLCSAADLFVYFDFEVSYITASPLGVPQQVIAINGKFPGPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGL 98 (503)
Q Consensus 19 ~~~~~~~~~~~~~l~i~~~~~~~dG~~~~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DG~ 98 (503)
+...+.+++|+|+|+|++...++||+++.+|+|||++|||+|++++||+|+|+|+|+|+++++|||||++|..++++||+
T Consensus 21 ~~~~~~~~~~~y~~~v~~~~~~~dg~~~~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv 100 (539)
T PLN02835 21 SLVNGEDPYKYYTWTVTYGTISPLGVPQQVILINGQFPGPRLDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGV 100 (539)
T ss_pred hhhhccCcEEEEEEEEEEEEeccCCeEEEEEEECCcCCCCCEEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCC
Confidence 33444568999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCceEEEEEeCCCceeeEEccCchhhhhcCceeeEEEEeCCCCCCCCCCCCCceEEEEeeeeeCCHHHHHH
Q 010700 99 LGTNCPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFIINNRAIIPIPFDTPDGDITILIGDWYTRNHTALRK 178 (503)
Q Consensus 99 ~~~q~~i~PG~~~~y~f~~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~ 178 (503)
+++||||+||++|+|+|++++++||||||||.+.|+++||+|+|||++++..+.++..+|+|++|+++||+++....+..
T Consensus 101 ~~tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~ 180 (539)
T PLN02835 101 LGTNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRIPIPFPLPDGDFTLLVGDWYKTSHKTLQQ 180 (539)
T ss_pred ccCcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeCCCCCCcCCCCCCceEEEEeeccccCCHHHHHH
Confidence 99999999999999999987789999999999999999999999998765545566678999999999999998777666
Q ss_pred HhhcCCCCCCCCeEEECCcCCCCCCCCCCCCCCCceeEEEeCCcEEEEEEeEeCCCCeeeEEEeCCcEEEEEecCCccce
Q 010700 179 TLDAGKGLGMPDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQ 258 (503)
Q Consensus 179 ~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~via~DG~~~~p 258 (503)
.+..+...+.++.+||||+.. +.+++++||+|||||||+|..+.+.|+|+||+|+||++||.+++|
T Consensus 181 ~~~~g~~~~~~d~~liNG~~~--------------~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~~DG~~v~p 246 (539)
T PLN02835 181 RLDSGKVLPFPDGVLINGQTQ--------------STFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVEVEGSHTIQ 246 (539)
T ss_pred HhhcCCCCCCCceEEEccccC--------------ceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEEECCccCCC
Confidence 666666667889999999987 789999999999999999999999999999999999999999999
Q ss_pred eeecEEEEcCCceEEEEEEeCCCCCcceEEEEeeeccccccCCCcceEEEEEecCCCCCCCCCCCCCCCCCCCccccccc
Q 010700 259 QNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASARFVNESQWKRVTGVAILHYTNSKGKARGPLPEGPNDEFDKTFSMNQ 338 (503)
Q Consensus 259 ~~~d~v~l~pGeR~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~ 338 (503)
..++.+.|++||||||+|++++++| +|||++...+... .....|||+|.++..+.+.++|..|.. +...+...
T Consensus 247 ~~~~~l~i~~GqRydvlv~~~~~~g-~y~i~a~~~~~~~----~~~~~ail~Y~~~~~~~~~~~p~~p~~--~~~~~~~~ 319 (539)
T PLN02835 247 NIYDSLDVHVGQSVAVLVTLNQSPK-DYYIVASTRFTRQ----ILTATAVLHYSNSRTPASGPLPALPSG--ELHWSMRQ 319 (539)
T ss_pred ceeeEEEECcCceEEEEEEcCCCCC-cEEEEEEccccCC----CcceEEEEEECCCCCCCCCCCCCCCcc--ccccccch
Confidence 9999999999999999999998877 9999986543222 256789999988643222233332221 11112222
Q ss_pred cccccccCCCCCCCCCCCCCCCcCccceeEEEEEecCCCCccCCeEEEEecCccCCCCCCchhccccccccCccccC-CC
Q 010700 339 ARSIRWNVSASGARPNPQGSFRYGSINVTEVYVLRNKPPEMIDGKRRATLSGISFVNPSTPIRLADWFKVKGAYKLD-FP 417 (503)
Q Consensus 339 ~~~~~~~l~~~~~~~~p~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~iN~~s~~~~~~P~l~~~~~~~~~~~~~~-~~ 417 (503)
+......+.+....+.+..+........++++.+..... ..++..+|++||++|..|++|+|++.+.+.++.++.+ +.
T Consensus 320 ~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~~ 398 (539)
T PLN02835 320 ARTYRWNLTASAARPNPQGSFHYGKITPTKTIVLANSAP-LINGKQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSIQ 398 (539)
T ss_pred hhccccccCccccCCCCCccccccccCCCceEEEecccc-ccCCeEEEEECCcccCCCCCChhhhhhhcCCCccccCccc
Confidence 222233344333334433222222233455555543221 2345678999999999999999887766556666644 22
Q ss_pred CCCCCCCCCcceEEEecCCCcEEEEEEeCCCCCCCceeecCCceEEEeeccCCCCCCCCCCCCCCCCCccceEEeCCCCc
Q 010700 418 TKPVTGPPRMETSVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQARRHLC 497 (503)
Q Consensus 418 ~~p~~~~~~~~~~~~~~~~g~~vdivi~N~~~~~HP~HLHGh~F~Vl~~g~g~~~~~~~~~~n~~~p~~RDTv~v~~~g~ 497 (503)
..+.+...+.+++++.++.|+||||+|+|.+...||||||||+||||++|.|.|++.....+|+.||++||||.||++||
T Consensus 399 ~~~~~~~~~~~t~~~~~~~~~~Veivi~N~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw 478 (539)
T PLN02835 399 SLPSGGPAFVATSVMQTSLHDFLEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPKSW 478 (539)
T ss_pred cCCCCCccccCCeEEEcCCCCEEEEEEECCCCCCCCCCCCCccEEEEeccCCCCCcccccccCCCCCCccceEEeCCCCE
Confidence 23333334557889999999999999999988899999999999999999999987655678999999999999999999
Q ss_pred ccCcc
Q 010700 498 SNRNY 502 (503)
Q Consensus 498 ~~~~~ 502 (503)
++|||
T Consensus 479 ~~IrF 483 (539)
T PLN02835 479 TTILV 483 (539)
T ss_pred EEEEE
Confidence 99998
No 5
>PLN02792 oxidoreductase
Probab=100.00 E-value=1.4e-97 Score=778.24 Aligned_cols=462 Identities=49% Similarity=0.860 Sum_probs=377.9
Q ss_pred hcCCceEEEEEEEEEEEeCCCCceeEEEEEcCCCCCceEEEecCCEEEEEEEeCCCCCeeEEEccCCCCCCCCCCCCCCC
Q 010700 22 SAADLFVYFDFEVSYITASPLGVPQQVIAINGKFPGPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLGT 101 (503)
Q Consensus 22 ~~~~~~~~~~l~i~~~~~~~dG~~~~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DG~~~~ 101 (503)
...+++++|+|+|++...++||+.+.+++|||++|||+|++++||+|+|+|+|+|+++++|||||++|.+++|+||++++
T Consensus 11 ~~~~~~~~~~~~vt~~~~~pdg~~~~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~t 90 (536)
T PLN02792 11 VKADDTLFYNWRVTYGNISLLTLPRRGILINGQFPGPEIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYGT 90 (536)
T ss_pred hhcCCeEEEEEEEEEEEeCCCCeEEEEEEECCCCCCCcEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCCC
Confidence 56667789999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred CCCCCCCCceEEEEEeCCCceeeEEccCchhhhhcCceeeEEEEeCCCCCCCCCCCCCceEEEEeeeeeCCHHHHHHHhh
Q 010700 102 NCPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFIINNRAIIPIPFDTPDGDITILIGDWYTRNHTALRKTLD 181 (503)
Q Consensus 102 q~~i~PG~~~~y~f~~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~~~~ 181 (503)
||||+||++|+|+|++++++||||||||.+.|+.+||+|+|||++++..+.+++.+|+|++++|+||+++....+...+.
T Consensus 91 qcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~~~~~p~~~~d~e~~i~l~Dw~~~~~~~~~~~~~ 170 (536)
T PLN02792 91 TCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRIPVPFPEPAGDFTFLIGDWYRRNHTTLKKILD 170 (536)
T ss_pred cCccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceEEeCCcccCcCCCcccceeEEEecccccCCHHHHHHHhh
Confidence 99999999999999997789999999999999999999999999866555666678999999999999998766655555
Q ss_pred cCCCCC-CCCeEEECCcCCCCCCCCCCCCCCCceeEEEeCCcEEEEEEeEeCCCCeeeEEEeCCcEEEEEecCCccceee
Q 010700 182 AGKGLG-MPDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQN 260 (503)
Q Consensus 182 ~~~~~~-~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~via~DG~~~~p~~ 260 (503)
.+...+ ++|.+||||++...+ +.+++++||+|||||||+|..+.+.|+|+||+|+||++||.+++|..
T Consensus 171 ~g~~~~~~~d~~liNG~~~~~~-----------~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~~v~p~~ 239 (536)
T PLN02792 171 GGRKLPLMPDGVMINGQGVSYV-----------YSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGTHTVQSM 239 (536)
T ss_pred ccCcCCCCCCEEEEeccCCCCc-----------ceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCccCCCcc
Confidence 554434 789999999987433 78999999999999999999999999999999999999999999999
Q ss_pred ecEEEEcCCceEEEEEEeCCCCCcceEEEEeeeccccccCCCcceEEEEEecCCCCCCCCCCCCCCCCCCCccccccccc
Q 010700 261 YTSLDIHVGQSYSFLVTMDQNASTDYYIVASARFVNESQWKRVTGVAILHYTNSKGKARGPLPEGPNDEFDKTFSMNQAR 340 (503)
Q Consensus 261 ~d~v~l~pGeR~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~ 340 (503)
+++|.|++||||||+|++++++| +|||++...+.+. ...+.|||+|.++..... ..|..|.. .+..++.....
T Consensus 240 ~~~l~i~~GqRydVlV~a~~~~g-~Y~i~a~~~~~~~----~~~~~ail~Y~g~~~~~~-~~p~~p~~-~~~~~~~~~~~ 312 (536)
T PLN02792 240 YTSLDIHVGQTYSVLVTMDQPPQ-NYSIVVSTRFIAA----KVLVSSTLHYSNSKGHKI-IHARQPDP-DDLEWSIKQAQ 312 (536)
T ss_pred eeEEEEccCceEEEEEEcCCCCc-eEEEEEEeccCCC----CCceEEEEEECCCCCCCC-CCCCCCCc-CCccccccchh
Confidence 99999999999999999998877 9999998765432 257789999988653211 11112211 12233333333
Q ss_pred cccccCCCCCCCCCCCCCCCcCccceeEEEEEecCCCCccCCeEEEEecCccCCCCCCchhccccccccCccccC-CCCC
Q 010700 341 SIRWNVSASGARPNPQGSFRYGSINVTEVYVLRNKPPEMIDGKRRATLSGISFVNPSTPIRLADWFKVKGAYKLD-FPTK 419 (503)
Q Consensus 341 ~~~~~l~~~~~~~~p~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~iN~~s~~~~~~P~l~~~~~~~~~~~~~~-~~~~ 419 (503)
.++..+.+..+.++|+.........+++++.+..... ...+..+|+|||++|..|++|+|++.++++.+++..+ +++.
T Consensus 313 ~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~ 391 (536)
T PLN02792 313 SIRTNLTASGPRTNPQGSYHYGKMKISRTLILESSAA-LVKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIPDK 391 (536)
T ss_pred hhhhccCCCCCCCCCCcccccceeccceeEEeccccc-ccCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCccC
Confidence 3344444433445555444333344555555443221 2235678999999999999999988776666776553 4544
Q ss_pred CCC-CCCCcceEEEecCCCcEEEEEEeCCCCCCCceeecCCceEEEeeccCCCCCCCCCCCCCCCCCccceEEeCCCCcc
Q 010700 420 PVT-GPPRMETSVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQARRHLCS 498 (503)
Q Consensus 420 p~~-~~~~~~~~~~~~~~g~~vdivi~N~~~~~HP~HLHGh~F~Vl~~g~g~~~~~~~~~~n~~~p~~RDTv~v~~~g~~ 498 (503)
|.. .....+++++.++.|++|||||+|.+...||||||||+||||++|.|.|++.....||++||++||||.||++||+
T Consensus 392 p~~~~~~~~~~~v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~ 471 (536)
T PLN02792 392 PRRGGGMRLDTSVMGAHHNAFLEIIFQNREKIVQSYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWT 471 (536)
T ss_pred CcccCCCccCceEEEcCCCCEEEEEEECCCCCCCCeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEE
Confidence 332 2233467889999999999999998888999999999999999999999987667899999999999999999999
Q ss_pred cCcc
Q 010700 499 NRNY 502 (503)
Q Consensus 499 ~~~~ 502 (503)
+|||
T Consensus 472 aIRf 475 (536)
T PLN02792 472 AVYV 475 (536)
T ss_pred EEEE
Confidence 9998
No 6
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=1.1e-96 Score=771.94 Aligned_cols=460 Identities=47% Similarity=0.841 Sum_probs=367.0
Q ss_pred CceEEEEEEEEEEEeCCCCceeEEEEEcCCCCCceEEEecCCEEEEEEEeCCCCCeeEEEccCCCCCCCCCCCCCCCCCC
Q 010700 25 DLFVYFDFEVSYITASPLGVPQQVIAINGKFPGPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLGTNCP 104 (503)
Q Consensus 25 ~~~~~~~l~i~~~~~~~dG~~~~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DG~~~~q~~ 104 (503)
+++|+|+|+|++...++||+.+.+++|||++|||+|++++||+|+|+|+|+|+++++|||||++|..++|+||++++|||
T Consensus 24 a~~~~~~~~vt~~~~~pdG~~~~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQcp 103 (545)
T PLN02168 24 APIVSYQWVVSYSQRFILGGNKQVIVINDMFPGPLLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTNCP 103 (545)
T ss_pred ccEEEEEEEEEEEEecCCCeEEEEEEECCcCCCCcEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCCCcCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEEEeCCCceeeEEccCchhhhhcCceeeEEEEeCCCCCCCCCCCCCceEEEEeeeeeCCHHHHHHHhhcCC
Q 010700 105 IPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFIINNRAIIPIPFDTPDGDITILIGDWYTRNHTALRKTLDAGK 184 (503)
Q Consensus 105 i~PG~~~~y~f~~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~~~~~~~ 184 (503)
|+||++|+|+|++++++||||||||.+.|+++||+|+|||++++..+.|+..+|+|++|+|+||++.+...+......+.
T Consensus 104 I~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~g~ 183 (545)
T PLN02168 104 ILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVPFPKPDEEYDILIGDWFYADHTVMRASLDNGH 183 (545)
T ss_pred CCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEcCCcccCcCcCcccceeeEEEEecCCCCHHHHHhhhhcCC
Confidence 99999999999997689999999999999999999999999987666676678999999999999987655544444444
Q ss_pred CCCCCCeEEECCcCCCCCCCCCCCCCCCceeEEEeCCcEEEEEEeEeCCCCeeeEEEeCCcEEEEEecCCccceeeecEE
Q 010700 185 GLGMPDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTSL 264 (503)
Q Consensus 185 ~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v 264 (503)
..+.++.+||||++.. .+++++++||+|||||||++....+.|+|+||+|+||++||.+++|..++++
T Consensus 184 ~~~~~d~~liNG~~~~------------~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa~DG~~v~p~~~~~l 251 (545)
T PLN02168 184 SLPNPDGILFNGRGPE------------ETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVETEGTYVQKRVYSSL 251 (545)
T ss_pred CCCCCCEEEEeccCCC------------cceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEEECCeECCCceeeEE
Confidence 4557899999999852 2789999999999999999999999999999999999999999999999999
Q ss_pred EEcCCceEEEEEEeCCCC-C--cceEEEEeeeccccccCCCcceEEEEEecCCCCCCCCCCCCCCCCCCCcccccccccc
Q 010700 265 DIHVGQSYSFLVTMDQNA-S--TDYYIVASARFVNESQWKRVTGVAILHYTNSKGKARGPLPEGPNDEFDKTFSMNQARS 341 (503)
Q Consensus 265 ~l~pGeR~dvlv~~~~~~-g--~~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~ 341 (503)
.|++||||||+|++++++ | ++|||++.....+. ...+.|||+|+++......|++..|.. .+...+.+....
T Consensus 252 ~i~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~~~~~----~~~~~ail~Y~~~~~~~~~p~p~~p~~-~~~~~~~~~~~~ 326 (545)
T PLN02168 252 DIHVGQSYSVLVTAKTDPVGIYRSYYIVATARFTDA----YLGGVALIRYPNSPLDPVGPLPLAPAL-HDYFSSVEQALS 326 (545)
T ss_pred EEcCCceEEEEEEcCCCCCCCcceEEEEEEecccCC----CcceEEEEEECCCCCCCCCCCCCCCcc-cccccccchhhh
Confidence 999999999999998654 3 38999998754332 266789999987653222233332321 011111122222
Q ss_pred ccccCCCCCCCCCCCCCCCcCccceeEEEEEecCCCCccCCeEEEEecCccCCCCCCchhccccccccCccccC-CCCCC
Q 010700 342 IRWNVSASGARPNPQGSFRYGSINVTEVYVLRNKPPEMIDGKRRATLSGISFVNPSTPIRLADWFKVKGAYKLD-FPTKP 420 (503)
Q Consensus 342 ~~~~l~~~~~~~~p~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~iN~~s~~~~~~P~l~~~~~~~~~~~~~~-~~~~p 420 (503)
++..+.+....+.|...+......+++++.+..... ..++..+|+|||++|..|++|+|++.++++++.+..+ ++..|
T Consensus 327 ~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~p 405 (545)
T PLN02168 327 IRMDLNVGAARSNPQGSYHYGRINVTRTIILHNDVM-LSSGKLRYTINGVSFVYPGTPLKLVDHFQLNDTIIPGMFPVYP 405 (545)
T ss_pred hhhcCCCCCCCCCCcccccccccccceeEEeccccc-ccCceEEEEECCCccCCCCCchhhhhhcccccccccCCCccCC
Confidence 222333333333443333222334455555443211 1245678999999999999999876655444433332 33333
Q ss_pred CCCCCCcceEEEecCCCcEEEEEEeCCCCCCCceeecCCceEEEeeccCCCCCCCCCCCCCCCCCccceEEeCCCCcccC
Q 010700 421 VTGPPRMETSVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQARRHLCSNR 500 (503)
Q Consensus 421 ~~~~~~~~~~~~~~~~g~~vdivi~N~~~~~HP~HLHGh~F~Vl~~g~g~~~~~~~~~~n~~~p~~RDTv~v~~~g~~~~ 500 (503)
.+.....+++++.++.|+||||||+|.....||||||||+||||++|.|.|++.....||++||++|||+.||++||++|
T Consensus 406 ~~~~~~~~~~v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vI 485 (545)
T PLN02168 406 SNKTPTLGTSVVDIHYKDFYHIVFQNPLFSLESYHIDGYNFFVVGYGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAI 485 (545)
T ss_pred CcCccccCceEEEecCCCEEEEEEeCCCCCCCCeeeCCCceEEEECCCCCCCccccccCCCCCCCccceEEeCCCCEEEE
Confidence 22222335788899999999999999988899999999999999999999997766679999999999999999999999
Q ss_pred cc
Q 010700 501 NY 502 (503)
Q Consensus 501 ~~ 502 (503)
||
T Consensus 486 RF 487 (545)
T PLN02168 486 LI 487 (545)
T ss_pred EE
Confidence 98
No 7
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.2e-91 Score=722.08 Aligned_cols=481 Identities=45% Similarity=0.748 Sum_probs=417.7
Q ss_pred HHHHHHHHhhhhcCCceEEEEEEEEEEEeCCCCceeEEEEEcCCCCCceEEEecCCEEEEEEEeCCCCCeeEEEccCCCC
Q 010700 11 AIHIALLASLCSAADLFVYFDFEVSYITASPLGVPQQVIAINGKFPGPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQR 90 (503)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~dG~~~~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~ 90 (503)
.+.+.++.+...+.++++.++|++++..+.++|.++.++++||++|||+|+|++||+|.|+|.|+++++++|||||++|+
T Consensus 12 ~~~~~~~~~~~~a~~~~~~~~~~v~~~~~s~l~~~~~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~ 91 (563)
T KOG1263|consen 12 LCGSLLLVFFSQAEAPIRFHTWKVTYGTASPLCVEKQVITINGQFPGPTINAEEGDTIVVNVVNRLDEPFSIHWHGVRQR 91 (563)
T ss_pred HHHHHHHHHHhhhcCceEEEEeeEEeeeeccCCccceeEeecCCCCCCeEEEEeCCEEEEEEEeCCCCceEEEecccccc
Confidence 35555667778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEEEEeCCCceeeEEccCchhhhhcCceeeEEEEeCCCCCCCCCCCCCceEEEEeeeee
Q 010700 91 RSSWQDGLLGTNCPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFIINNRAIIPIPFDTPDGDITILIGDWYT 170 (503)
Q Consensus 91 ~~~~~DG~~~~q~~i~PG~~~~y~f~~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~ 170 (503)
.++|+||+.+|||||+||++|+|+|+++++.||||||+|++.|+++|++|+|||+++...+.|++++|+|++|+++|||.
T Consensus 92 kn~w~DG~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p~pf~~pd~E~~ill~dW~~ 171 (563)
T KOG1263|consen 92 KNPWQDGVYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLPVPFPKPDKEFTILLGDWYK 171 (563)
T ss_pred CCccccCCccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCCCCCCCCCceeEEEeEeecc
Confidence 99999994349999999999999999988999999999999999999999999999988788888999999999999999
Q ss_pred C-CHHHHHHHhhcCCCCCC-CCeEEECCcCCCCCCCCCCCCCCCceeEEEeCCcEEEEEEeEeCCCCeeeEEEeCCcEEE
Q 010700 171 R-NHTALRKTLDAGKGLGM-PDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLL 248 (503)
Q Consensus 171 ~-~~~~~~~~~~~~~~~~~-~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~v 248 (503)
+ ....+...++.+...+. +|..+|||+..+..+| .+++++++||+|||||+|+|....+.|+|+||+|+|
T Consensus 172 ~~~~~~l~~~~~~~~~~p~~~D~~~iNg~~g~~~~~--------~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltv 243 (563)
T KOG1263|consen 172 NLNHKNLKNFLDRTGALPNPSDGVLINGRSGFLYNC--------TPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTV 243 (563)
T ss_pred ccCHHHHHHhhccCCCCCCCCCceEECCCCCcccCc--------eeEEEEcCCCEEEEEEEccccccceEEEECCeEEEE
Confidence 6 77778777777665554 8999999998644323 489999999999999999999999999999999999
Q ss_pred EEecCCccceeeecEEEEcCCceEEEEEEeCCCCCcceEEEEeeeccccccCCCcceEEEEEecCCCCCCCCCCC---CC
Q 010700 249 AETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASARFVNESQWKRVTGVAILHYTNSKGKARGPLP---EG 325 (503)
Q Consensus 249 ia~DG~~~~p~~~d~v~l~pGeR~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p---~~ 325 (503)
|++||.+++|..++++.|+||||+||+|+++|.++ +|||.+...+.+...+.+....++++|.++..+.+...+ ..
T Consensus 244 Ve~Dg~y~~p~~~~~l~i~~GQ~~~vLvtadq~~~-~Y~i~~~~~~~~~~~~~~~t~~~~l~y~~~~~~~s~~~~~~~~~ 322 (563)
T KOG1263|consen 244 VEVDGAYTKPFTTDSLDIHPGQTYSVLLTADQSPG-DYYIAASPYFDASNVPFNLTTTGILRYSGSTHPASEKLPIYPFL 322 (563)
T ss_pred EEecceEEeeeeeceEEEcCCcEEEEEEeCCCCCC-cEEEEEEeeeccCCcceeeeEEEEEEEeCCcccCcccCcccccC
Confidence 99999999999999999999999999999999999 999999987765422225889999999985544333322 11
Q ss_pred CCCCCCccccccccccccccCCCCCCCCCCCCCCCcCccceeEEEEEecCCCCccCCeEEEEecCccCCCCCCchhcccc
Q 010700 326 PNDEFDKTFSMNQARSIRWNVSASGARPNPQGSFRYGSINVTEVYVLRNKPPEMIDGKRRATLSGISFVNPSTPIRLADW 405 (503)
Q Consensus 326 p~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~iN~~s~~~~~~P~l~~~~ 405 (503)
|. .++..++..+.+.++..++...+.++|+++.......+++++.+.+... ..+++.+++||+.+|..|++|.+++.+
T Consensus 323 ~~-~~~~~~s~~~~~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~siN~isf~~P~tp~~l~~~ 400 (563)
T KOG1263|consen 323 PP-GNDTAWSTYQARSIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSDN-KNNGKLRASINNISFVTPKTPSLLAAY 400 (563)
T ss_pred Cc-ccCchhhhhhhhcccccccccCcccCCCccccccceeeeccEEeccCCC-CCCcEEEEEEcceEEECCCCchhhhhh
Confidence 11 1255678888888888888888899999988888888888888887543 456789999999999999999998887
Q ss_pred cccc-CccccCCCCCC--CCC--CCCcceEEEecCCCcEEEEEEeCCCC---CCCceeecCCceEEEeeccCCCCC--CC
Q 010700 406 FKVK-GAYKLDFPTKP--VTG--PPRMETSVINGTYRGFMEVILQNNDT---KMHAYHMSGYAFFVVGMDYGEWTD--NS 475 (503)
Q Consensus 406 ~~~~-~~~~~~~~~~p--~~~--~~~~~~~~~~~~~g~~vdivi~N~~~---~~HP~HLHGh~F~Vl~~g~g~~~~--~~ 475 (503)
+... +.+..+++..| ... +.+.+++++.+++++.||||++|.+. ..||||||||.||||++|.|.|++ +.
T Consensus 401 ~~~~~~~~~~d~p~~P~~~~~~~~~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~~~d~ 480 (563)
T KOG1263|consen 401 FKNIPGYFTNDFPDKPPIKFDYTGPTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDPAKDP 480 (563)
T ss_pred hccCCccccCccCCCCccccCCccccccceEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccCcCcCh
Confidence 7654 45555577766 211 23789999999999999999999874 468999999999999999999998 44
Q ss_pred CCCCCCCCCCccceEEeCCCCcccCcc
Q 010700 476 RGTYNKWDGIARTTTQARRHLCSNRNY 502 (503)
Q Consensus 476 ~~~~n~~~p~~RDTv~v~~~g~~~~~~ 502 (503)
...||++||++||||.|||+||++|||
T Consensus 481 ~~~yNl~dp~~R~Tv~V~pggw~aIrf 507 (563)
T KOG1263|consen 481 RKKYNLVDPVSRDTVQVPPGGWTAIRF 507 (563)
T ss_pred hhhcccCCCcccceEEeCCCCEEEEEE
Confidence 578999999999999999999999998
No 8
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=1.8e-88 Score=718.00 Aligned_cols=460 Identities=28% Similarity=0.507 Sum_probs=348.5
Q ss_pred CceEEEEEEEEEEEeCCCCceeEEEEEcCCCCCceEEEecCCEEEEEEEeCCC-CCeeEEEccCCCCCCCCCCCCCC-CC
Q 010700 25 DLFVYFDFEVSYITASPLGVPQQVIAINGKFPGPTINVTTNNNVVVNVRNKLD-ESLLIHWSGIQQRRSSWQDGLLG-TN 102 (503)
Q Consensus 25 ~~~~~~~l~i~~~~~~~dG~~~~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DG~~~-~q 102 (503)
+++++|+|+|++..+++||+++.+++|||++|||+|++++||+|+|+|+|+|+ ++++|||||+++.+++++||+++ +|
T Consensus 21 ~~~~~~~~~vt~~~~~pdG~~~~v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvtq 100 (574)
T PLN02191 21 AAVREYTWEVEYKYWWPDCKEGAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVTQ 100 (574)
T ss_pred cceEEEEEEEEEEEeccCCceeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCcccc
Confidence 57899999999999999999999999999999999999999999999999998 78999999999999999999999 99
Q ss_pred CCCCCCCceEEEEEeCCCceeeEEccCchhhhhcCceeeEEEEeCCCCCCCCCCCCCceEEEEeeeeeCCHHHHHHHhhc
Q 010700 103 CPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFIINNRAIIPIPFDTPDGDITILIGDWYTRNHTALRKTLDA 182 (503)
Q Consensus 103 ~~i~PG~~~~y~f~~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~~~~~ 182 (503)
|||+||++|+|+|++ +++||||||||.+.|+++||+|+|||+++.+...++ .+|+|++|+|+||++............
T Consensus 101 ~pI~PG~s~~Y~f~~-~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~~~~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~ 178 (574)
T PLN02191 101 CAINPGETFTYKFTV-EKPGTHFYHGHYGMQRSAGLYGSLIVDVAKGPKERL-RYDGEFNLLLSDWWHESIPSQELGLSS 178 (574)
T ss_pred CCcCCCCeEEEEEEC-CCCeEEEEeeCcHHHHhCCCEEEEEEccCCCCCCCC-CCCeeEEEeeeccccCChHHHHHhhcc
Confidence 999999999999999 589999999999999999999999999765432233 469999999999999864432211211
Q ss_pred --CCCCCCCCeEEECCcCCCCCCCCCC--------------CCCCCceeEEEeCCcEEEEEEeEeCCCCeeeEEEeCCcE
Q 010700 183 --GKGLGMPDGVLINGKGPYQYNTTLV--------------PDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNL 246 (503)
Q Consensus 183 --~~~~~~~~~~liNG~~~~~~~~~~~--------------~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~ 246 (503)
.....+++++||||++.+.|..... ...+...++++++||+|||||||+|+.+.+.|+|+||+|
T Consensus 179 ~~~~~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~ 258 (574)
T PLN02191 179 KPMRWIGEAQSILINGRGQFNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQGHKL 258 (574)
T ss_pred CCCCcCCCCCceEECCCCCCCCcccccccCCcccccceeccCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECCCeE
Confidence 1123568999999999988853210 112344579999999999999999999999999999999
Q ss_pred EEEEecCCccceeeecEEEEcCCceEEEEEEeCCCCCcceEEEEeeeccccccCCCcceEEEEEecCCCCCC--CCCCCC
Q 010700 247 LLAETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASARFVNESQWKRVTGVAILHYTNSKGKA--RGPLPE 324 (503)
Q Consensus 247 ~via~DG~~~~p~~~d~v~l~pGeR~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~--~~~~p~ 324 (503)
+|||+||.+++|..++++.|++||||||+|+++++++++||||+.....+. ......|||+|.+..... +.+.+.
T Consensus 259 tVIa~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~~~~~~---~~~~~~ail~Y~~~~~~~~p~~~~~~ 335 (574)
T PLN02191 259 VVVEADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGVRGRKP---NTTQALTILNYVTAPASKLPSSPPPV 335 (574)
T ss_pred EEEEcCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEccccCC---CCCCceEEEEECCCCCCCCCCCCCCC
Confidence 999999999999999999999999999999999876548999997654321 123457999998754321 111111
Q ss_pred CCCCCCCccccccccccccccCCCCCCCCCCCCCCCcCccceeEEEEEecCCCCccCCeEEEEecCccCCCCCCchhccc
Q 010700 325 GPNDEFDKTFSMNQARSIRWNVSASGARPNPQGSFRYGSINVTEVYVLRNKPPEMIDGKRRATLSGISFVNPSTPIRLAD 404 (503)
Q Consensus 325 ~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~iN~~s~~~~~~P~l~~~ 404 (503)
.|... +.... ......+......+.++ ....+.++.+.... ...+..+|++||.+|..|++|+|++.
T Consensus 336 ~p~~~-~~~~~----~~~~~~~~~~~~~~~~p------~~~~~~~~~~~~~~--~~~~~~~~~~n~~s~~~p~~P~L~~~ 402 (574)
T PLN02191 336 TPRWD-DFERS----KNFSKKIFSAMGSPSPP------KKYRKRLILLNTQN--LIDGYTKWAINNVSLVTPATPYLGSV 402 (574)
T ss_pred CCccc-ccchh----hcccccccccccCCCCC------CcccceEEEecccc--eeCCeEEEEECcccCcCCCcchHHHH
Confidence 11110 00000 11111110000001111 01123344333211 22345789999999999999998887
Q ss_pred cccccCccccCCCCC--CC---------CCCCCcceEEEecCCCcEEEEEEeCCC------CCCCceeecCCceEEEeec
Q 010700 405 WFKVKGAYKLDFPTK--PV---------TGPPRMETSVINGTYRGFMEVILQNND------TKMHAYHMSGYAFFVVGMD 467 (503)
Q Consensus 405 ~~~~~~~~~~~~~~~--p~---------~~~~~~~~~~~~~~~g~~vdivi~N~~------~~~HP~HLHGh~F~Vl~~g 467 (503)
+.+..+.++.+.+.. +. ....+.+.+++.++.|+||||+|+|.+ ...||||||||+||||++|
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~Vlg~G 482 (574)
T PLN02191 403 KYNLKLGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNVTVDVIIQNANVLKGVVSEIHPWHLHGHDFWVLGYG 482 (574)
T ss_pred hhccCcccccCCCcccccccccccCCCccccccccceeEEecCCCEEEEEEECCCcccCCCCCCCCEEeCCCCeEEEEec
Confidence 654444433221110 00 012345677889999999999999985 5789999999999999999
Q ss_pred cCCCCCCC-CCCCCCCCCCccceEEeCCCCcccCcc
Q 010700 468 YGEWTDNS-RGTYNKWDGIARTTTQARRHLCSNRNY 502 (503)
Q Consensus 468 ~g~~~~~~-~~~~n~~~p~~RDTv~v~~~g~~~~~~ 502 (503)
.|.|++.. ...+|+.||++|||++||++||++|||
T Consensus 483 ~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf 518 (574)
T PLN02191 483 DGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRF 518 (574)
T ss_pred CCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEE
Confidence 99998632 246899999999999999999999998
No 9
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=2.6e-88 Score=717.19 Aligned_cols=465 Identities=28% Similarity=0.505 Sum_probs=348.4
Q ss_pred CceEEEEEEEEEEEeCCCCceeEEEEEcCCCCCceEEEecCCEEEEEEEeCCCCCeeEEEccCCCCCCCCCCCCCC-CCC
Q 010700 25 DLFVYFDFEVSYITASPLGVPQQVIAINGKFPGPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLG-TNC 103 (503)
Q Consensus 25 ~~~~~~~l~i~~~~~~~dG~~~~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DG~~~-~q~ 103 (503)
+++|+|+|+|++..+++||+++.+++|||++|||+|++++||+|+|+|+|+|+++++|||||++|.+++++||+++ |||
T Consensus 1 ~~~r~y~~~it~~~~~pdG~~~~~~~~NG~~PGP~i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~ 80 (539)
T TIGR03389 1 AEVRHYTFDVQEKNVTRLCSTKSILTVNGKFPGPTLYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQC 80 (539)
T ss_pred CceEEEEEEEEEEEeccCCcEeEEEEECCcccCCEEEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccC
Confidence 3589999999999999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred CCCCCCceEEEEEeCCCceeeEEccCchhhhhcCceeeEEEEeCCCCCCCCCCCCCceEEEEeeeeeCCHHHHHH-Hhhc
Q 010700 104 PIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFIINNRAIIPIPFDTPDGDITILIGDWYTRNHTALRK-TLDA 182 (503)
Q Consensus 104 ~i~PG~~~~y~f~~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~-~~~~ 182 (503)
||+||++|+|+|++++++||||||||...|+ +||+|+|||+++...+.++..+|+|++|+|+||+++....+.. ....
T Consensus 81 pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~-~Gl~G~lIV~~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~ 159 (539)
T TIGR03389 81 PIQPGQSYVYNFTITGQRGTLWWHAHISWLR-ATVYGAIVILPKPGVPYPFPKPDREVPIILGEWWNADVEAVINQANQT 159 (539)
T ss_pred CcCCCCeEEEEEEecCCCeeEEEecCchhhh-ccceEEEEEcCCCCCCCCCCCCCceEEEEecccccCCHHHHHHHHHhc
Confidence 9999999999999966899999999998665 5999999999987655666678999999999999987665432 3333
Q ss_pred CCCCCCCCeEEECCcCCCCCCCCCCCCCCCceeEEEeCCcEEEEEEeEeCCCCeeeEEEeCCcEEEEEecCCccceeeec
Q 010700 183 GKGLGMPDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYT 262 (503)
Q Consensus 183 ~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~via~DG~~~~p~~~d 262 (503)
+....+++.++|||+......|. ....+.+++++||+|||||||+|....+.|+|+||+|+||++||.+++|+.++
T Consensus 160 ~~~~~~~d~~liNG~~~~~~~~~----~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~~~~P~~~~ 235 (539)
T TIGR03389 160 GGAPNVSDAYTINGHPGPLYNCS----SKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVDATYTKPFKTK 235 (539)
T ss_pred CCCCCccceEEECCCcCCCCCCC----CCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeCCcccCceEeC
Confidence 44445679999999975321111 12357899999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCceEEEEEEeCCCCCcceEEEEeeeccccccCCCcceEEEEEecCCCCCCCCCCCCCCCCCCCccccccccccc
Q 010700 263 SLDIHVGQSYSFLVTMDQNASTDYYIVASARFVNESQWKRVTGVAILHYTNSKGKARGPLPEGPNDEFDKTFSMNQARSI 342 (503)
Q Consensus 263 ~v~l~pGeR~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~ 342 (503)
++.|++||||||+|++++++| +||||+.....+........+.|||+|++.........+..+.. .+...+......+
T Consensus 236 ~l~i~~GqRydVlv~a~~~~g-~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~l 313 (539)
T TIGR03389 236 TIVIGPGQTTNVLLTADQSPG-RYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPILPTLPAY-NDTAAATNFSNKL 313 (539)
T ss_pred eEEecCCCEEEEEEECCCCCc-eEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCCCCCCCC-CchhhhhHHHhhc
Confidence 999999999999999998888 99999976543321123356899999987643111111111111 0100011100011
Q ss_pred cccCCCCCCCCCCCCCCCcCccceeEEEEEecCCCC-------c-cCCeEEEEecCccCCCCCCchhccccccccCcccc
Q 010700 343 RWNVSASGARPNPQGSFRYGSINVTEVYVLRNKPPE-------M-IDGKRRATLSGISFVNPSTPIRLADWFKVKGAYKL 414 (503)
Q Consensus 343 ~~~l~~~~~~~~p~~~~~~~~~~~t~~~~l~~~~~~-------~-~~~~~~~~iN~~s~~~~~~P~l~~~~~~~~~~~~~ 414 (503)
.....+..+...|. ..+.+..+.+...... . .....+|+|||++|..|++|+|.+...++.+.+..
T Consensus 314 ~~~~~~~~~~~~p~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~ 387 (539)
T TIGR03389 314 RSLNSAQYPANVPV------TIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTT 387 (539)
T ss_pred ccccccCCCCCCCC------CCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCcccc
Confidence 10000110111111 1111112222211000 0 12246899999999999999986665544444333
Q ss_pred CCCCC-C-----------CCCCCCcceEEEecCCCcEEEEEEeCCC---CCCCceeecCCceEEEeeccCCCCCCC-CCC
Q 010700 415 DFPTK-P-----------VTGPPRMETSVINGTYRGFMEVILQNND---TKMHAYHMSGYAFFVVGMDYGEWTDNS-RGT 478 (503)
Q Consensus 415 ~~~~~-p-----------~~~~~~~~~~~~~~~~g~~vdivi~N~~---~~~HP~HLHGh~F~Vl~~g~g~~~~~~-~~~ 478 (503)
++++. | .+...+.+++++.++.|++|||+|+|.+ ...||||||||+||||++|.|.|+... ...
T Consensus 388 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~ 467 (539)
T TIGR03389 388 DFPANPPTKFNYTGTNLPNNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAK 467 (539)
T ss_pred CCccCCCccccCCCCCcccccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccc
Confidence 22211 1 0011233678899999999999999985 448999999999999999999987542 236
Q ss_pred CCCCCCCccceEEeCCCCcccCcc
Q 010700 479 YNKWDGIARTTTQARRHLCSNRNY 502 (503)
Q Consensus 479 ~n~~~p~~RDTv~v~~~g~~~~~~ 502 (503)
+|+.||+||||++||++||++|||
T Consensus 468 ~nl~nP~rRDTv~vp~~g~vvirf 491 (539)
T TIGR03389 468 FNLVDPPERNTVGVPTGGWAAIRF 491 (539)
T ss_pred cccCCCCeeeeEEcCCCceEEEEE
Confidence 899999999999999999999998
No 10
>PLN02604 oxidoreductase
Probab=100.00 E-value=3.9e-87 Score=709.63 Aligned_cols=474 Identities=30% Similarity=0.500 Sum_probs=359.8
Q ss_pred HHHHHHHhhhhcCCceEEEEEEEEEEEeCCCCceeEEEEEcCCCCCceEEEecCCEEEEEEEeCC-CCCeeEEEccCCCC
Q 010700 12 IHIALLASLCSAADLFVYFDFEVSYITASPLGVPQQVIAINGKFPGPTINVTTNNNVVVNVRNKL-DESLLIHWSGIQQR 90 (503)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~dG~~~~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l-~~~~siH~HG~~~~ 90 (503)
+.++.-++...+.+.+|+|+|+|++..+++||+++.+|+|||++|||+|++++||+|+|+|+|++ .++++|||||+++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~y~~~vt~~~~~pdG~~r~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~ 88 (566)
T PLN02604 9 FLLFSVLNFPAAEARIRRYKWEVKYEYKSPDCFKKLVITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWHGIRQI 88 (566)
T ss_pred HHHHHHHHhhhccCcEEEEEEEEEEEEECCCCceeeEEEECCccCCCcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCC
Confidence 33444445566677899999999999999999999999999999999999999999999999998 58999999999999
Q ss_pred CCCCCCCCCC-CCCCCCCCCceEEEEEeCCCceeeEEccCchhhhhcCceeeEEEEeCCCCCCCCCCCCCceEEEEeeee
Q 010700 91 RSSWQDGLLG-TNCPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFIINNRAIIPIPFDTPDGDITILIGDWY 169 (503)
Q Consensus 91 ~~~~~DG~~~-~q~~i~PG~~~~y~f~~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~ 169 (503)
+++++||+++ +||+|+||++++|+|++ +++||||||||...|+.+||+|+|||+++...+.|+ .+|+|.+|+|+||+
T Consensus 89 ~~~~~DG~~~~tq~~i~pg~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~d~~l~l~Dw~ 166 (566)
T PLN02604 89 GTPWFDGTEGVTQCPILPGETFTYEFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPRGKSEPF-SYDYDRSIILTDWY 166 (566)
T ss_pred CCccccCCCccccCccCCCCeEEEEEEc-CCCEEEEEeeCcHHHHhCCCeEEEEEEecCCCCCcc-ccCcceEEEeeccc
Confidence 9899999998 99999999999999999 689999999999999999999999999986544555 46899999999999
Q ss_pred eCCHHHHHHHhhcC--CCCCCCCeEEECCcCCCCCCCCCC-----------CCCCCceeEEEeCCcEEEEEEeEeCCCCe
Q 010700 170 TRNHTALRKTLDAG--KGLGMPDGVLINGKGPYQYNTTLV-----------PDGIDYETIEVHPGKTYRIRVHNVGISTS 236 (503)
Q Consensus 170 ~~~~~~~~~~~~~~--~~~~~~~~~liNG~~~~~~~~~~~-----------~~~~~~~~~~v~~G~~~rlRliN~g~~~~ 236 (503)
++...++....... ....+++..+|||++.+.|..... ...+..+++++++||+|||||||++..+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~d~~liNG~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRlINa~~~~~ 246 (566)
T PLN02604 167 HKSTYEQALGLSSIPFDWVGEPQSLLIQGKGRYNCSLVSSPYLKAGVCNATNPECSPYVLTVVPGKTYRLRISSLTALSA 246 (566)
T ss_pred cCCHHHHHHhhccCCCccCCCCCceEEcCCCCCCCccccCccccccccccCCCCCCceEEEecCCCEEEEEEEeccccce
Confidence 98775543322211 122467999999999988853210 11235568999999999999999999999
Q ss_pred eeEEEeCCcEEEEEecCCccceeeecEEEEcCCceEEEEEEeCCCCCcceEEEEeeeccccccCCCcceEEEEEecCCCC
Q 010700 237 LNFRIQNHNLLLAETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASARFVNESQWKRVTGVAILHYTNSKG 316 (503)
Q Consensus 237 ~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~ 316 (503)
+.|+|+||+|+|||+||.+++|.+++.|.|++||||||+|++++.+|++||||+.....+. ....++|||+|++...
T Consensus 247 ~~~sidgH~~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~~~~~~---~~~~~~aIL~Y~~~~~ 323 (566)
T PLN02604 247 LSFQIEGHNMTVVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSVVSRNN---TTPPGLAIFNYYPNHP 323 (566)
T ss_pred EEEEECCCEEEEEEeCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEecccCCC---CCcceeEEEEECCCCC
Confidence 9999999999999999999999999999999999999999999876558999987543321 2367799999986432
Q ss_pred CCCCCC--CCCCCCCCCccccccccccccccCCCCCCCCCCCCCCCcCccceeEEEEEecCCCCccCCeEEEEecCccCC
Q 010700 317 KARGPL--PEGPNDEFDKTFSMNQARSIRWNVSASGARPNPQGSFRYGSINVTEVYVLRNKPPEMIDGKRRATLSGISFV 394 (503)
Q Consensus 317 ~~~~~~--p~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~iN~~s~~ 394 (503)
....+. +..+.. .+....+++...+.. +... ... .....++++.+..... ..++..+|+||+.+|.
T Consensus 324 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~-~~~--------~~~~~d~~~~~~~~~~-~~~~~~~w~in~~~~~ 391 (566)
T PLN02604 324 RRSPPTVPPSGPLW-NDVEPRLNQSLAIKA-RHGY-IHP--------PPLTSDRVIVLLNTQN-EVNGYRRWSVNNVSFN 391 (566)
T ss_pred CCCCCCCCCCCCcc-cccchhhcchhcccc-cccC-cCC--------CCCCCCeEEEEecccc-ccCCeEEEEECcccCC
Confidence 111110 101110 000001111000000 0000 000 0112344554433211 2234678999999999
Q ss_pred CCCCchhccccccccCccccCC-CC-----------CCCCCCCCcceEEEecCCCcEEEEEEeCCC------CCCCceee
Q 010700 395 NPSTPIRLADWFKVKGAYKLDF-PT-----------KPVTGPPRMETSVINGTYRGFMEVILQNND------TKMHAYHM 456 (503)
Q Consensus 395 ~~~~P~l~~~~~~~~~~~~~~~-~~-----------~p~~~~~~~~~~~~~~~~g~~vdivi~N~~------~~~HP~HL 456 (503)
.|++|+|++......+.++.+. +. .......+.+.+++.++.|++|||+|+|.. ...|||||
T Consensus 392 ~p~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HL 471 (566)
T PLN02604 392 LPHTPYLIALKENLTGAFDQTPPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTMNANNSETHPWHL 471 (566)
T ss_pred CCCCchhHhhhhcCCCcccCCCCCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCccccCCCCCCCCEEe
Confidence 8999998776654555554221 10 001112344677899999999999999985 45799999
Q ss_pred cCCceEEEeeccCCCCCCC-CCCCCCCCCCccceEEeCCCCcccCcc
Q 010700 457 SGYAFFVVGMDYGEWTDNS-RGTYNKWDGIARTTTQARRHLCSNRNY 502 (503)
Q Consensus 457 HGh~F~Vl~~g~g~~~~~~-~~~~n~~~p~~RDTv~v~~~g~~~~~~ 502 (503)
|||+||||++|.|.|++.. ...+|+.||++|||++||++||++|||
T Consensus 472 HGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF 518 (566)
T PLN02604 472 HGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRF 518 (566)
T ss_pred cCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEE
Confidence 9999999999999997643 346899999999999999999999998
No 11
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=1.7e-86 Score=702.85 Aligned_cols=459 Identities=29% Similarity=0.514 Sum_probs=348.3
Q ss_pred eEEEEEEEEEEEeCCCCceeEEEEEcCCCCCceEEEecCCEEEEEEEeCCC-CCeeEEEccCCCCCCCCCCCCCC-CCCC
Q 010700 27 FVYFDFEVSYITASPLGVPQQVIAINGKFPGPTINVTTNNNVVVNVRNKLD-ESLLIHWSGIQQRRSSWQDGLLG-TNCP 104 (503)
Q Consensus 27 ~~~~~l~i~~~~~~~dG~~~~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DG~~~-~q~~ 104 (503)
+|+|+|+|++..+++||+.+.+++|||++|||+|++++||+|+|+|+|++. ++++|||||++|.+++|+||+++ +||+
T Consensus 1 ~~~y~~~vt~~~~~pdG~~~~~~~~Ng~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~ 80 (541)
T TIGR03388 1 IRHYKWEVEYEFWSPDCFEKLVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCA 80 (541)
T ss_pred CEEEEEEEEEEEecCCCeEeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCC
Confidence 489999999999999999999999999999999999999999999999985 78999999999999999999998 9999
Q ss_pred CCCCCceEEEEEeCCCceeeEEccCchhhhhcCceeeEEEEeCCCCCCCCCCCCCceEEEEeeeeeCCHHHHHHHhhc--
Q 010700 105 IPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFIINNRAIIPIPFDTPDGDITILIGDWYTRNHTALRKTLDA-- 182 (503)
Q Consensus 105 i~PG~~~~y~f~~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~~~~~-- 182 (503)
|+||++|+|+|++ +++||||||||.+.|+++||+|+|||+++...+.++ .+|+|++|+|+||+++...........
T Consensus 81 I~PG~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 158 (541)
T TIGR03388 81 INPGETFIYNFVV-DRPGTYFYHGHYGMQRSAGLYGSLIVDVPDGEKEPF-HYDGEFNLLLSDWWHKSIHEQEVGLSSKP 158 (541)
T ss_pred cCCCCEEEEEEEc-CCCEEEEEEecchHHhhccceEEEEEecCCCCCCCc-cccceEEEEeecccCCCHHHHHhhcccCC
Confidence 9999999999999 589999999999999999999999999986544454 468999999999999876543322221
Q ss_pred CCCCCCCCeEEECCcCCCCCCCCCC-------------CCCCCceeEEEeCCcEEEEEEeEeCCCCeeeEEEeCCcEEEE
Q 010700 183 GKGLGMPDGVLINGKGPYQYNTTLV-------------PDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLA 249 (503)
Q Consensus 183 ~~~~~~~~~~liNG~~~~~~~~~~~-------------~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~vi 249 (503)
.....+++.++|||++++.|..... ...+....+++++|++|||||||++..+.+.|+|+||+|+||
T Consensus 159 ~~~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VI 238 (541)
T TIGR03388 159 MRWIGEPQSLLINGRGQFNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVV 238 (541)
T ss_pred CcCCCCCcceEECCCCCCCCccccccCccccchhhccCCCCCCceEEEECCCCEEEEEEEcccccceEEEEECCCEEEEE
Confidence 1122467999999999888754311 112334569999999999999999999999999999999999
Q ss_pred EecCCccceeeecEEEEcCCceEEEEEEeCCCCCcceEEEEeeeccccccCCCcceEEEEEecCCCCCCC--CCCCCCCC
Q 010700 250 ETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASARFVNESQWKRVTGVAILHYTNSKGKAR--GPLPEGPN 327 (503)
Q Consensus 250 a~DG~~~~p~~~d~v~l~pGeR~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~--~~~p~~p~ 327 (503)
|+||.+++|..++.+.|++||||||+|++++.++++||||+....... ....++|||+|.+...... .+.+..|.
T Consensus 239 a~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~~~~~---~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~ 315 (541)
T TIGR03388 239 EADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVRGRKP---NTPPGLTVLNYYPNSPSRLPPTPPPVTPA 315 (541)
T ss_pred EeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecccCCC---CCccEEEEEEECCCCCCCCCCCCCCCCCC
Confidence 999999999999999999999999999999866548999997654321 2346789999987542111 11111121
Q ss_pred CCCCccccccccccccccCCCCCCCCCCCCCCCcCccceeEEEEEecCCCCccCCeEEEEecCccCCCCCCchhcccccc
Q 010700 328 DEFDKTFSMNQARSIRWNVSASGARPNPQGSFRYGSINVTEVYVLRNKPPEMIDGKRRATLSGISFVNPSTPIRLADWFK 407 (503)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~iN~~s~~~~~~P~l~~~~~~ 407 (503)
.. +..... .....+......+.|. ...++++.+..... ..++..+|++||.+|..|+.|+|.+...+
T Consensus 316 ~~-~~~~~~----~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~~n~~s~~~p~~p~l~~~~~~ 382 (541)
T TIGR03388 316 WD-DFDRSK----AFSLAIKAAMGSPKPP-------ETSDRRIVLLNTQN-KINGYTKWAINNVSLTLPHTPYLGSLKYN 382 (541)
T ss_pred cc-ccchhh----ccchhhhccccCCCCC-------CCCCcEEEEeccCc-ccCceEEEEECcccCCCCCccHHHHHhhc
Confidence 10 000000 0000000000011111 11234433322211 12345779999999998999998877554
Q ss_pred ccCccccCCC-----------CCCCCCCCCcceEEEecCCCcEEEEEEeCCC------CCCCceeecCCceEEEeeccCC
Q 010700 408 VKGAYKLDFP-----------TKPVTGPPRMETSVINGTYRGFMEVILQNND------TKMHAYHMSGYAFFVVGMDYGE 470 (503)
Q Consensus 408 ~~~~~~~~~~-----------~~p~~~~~~~~~~~~~~~~g~~vdivi~N~~------~~~HP~HLHGh~F~Vl~~g~g~ 470 (503)
..+.++.+.+ ..+.....+.+++++.++.|++|||||+|.. ...||||||||+||||++|.|.
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~vlg~g~g~ 462 (541)
T TIGR03388 383 LLNAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSETHPWHLHGHDFWVLGYGEGK 462 (541)
T ss_pred CCccccCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCCCCCCCcEEecCCceEEEeeccCC
Confidence 4333322100 0111223455778899999999999999974 4589999999999999999999
Q ss_pred CCCC-CCCCCCCCCCCccceEEeCCCCcccCccC
Q 010700 471 WTDN-SRGTYNKWDGIARTTTQARRHLCSNRNYW 503 (503)
Q Consensus 471 ~~~~-~~~~~n~~~p~~RDTv~v~~~g~~~~~~~ 503 (503)
|++. ....+|+.||++|||++||++||++|||.
T Consensus 463 ~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~ 496 (541)
T TIGR03388 463 FRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFV 496 (541)
T ss_pred CCcccCcccccCCCCCEeceEEeCCCceEEEEEE
Confidence 9754 23469999999999999999999999993
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=2.4e-85 Score=692.05 Aligned_cols=457 Identities=22% Similarity=0.356 Sum_probs=341.7
Q ss_pred EEEEEEEEEEeCCCCceeEEEEEcCCCCCceEEEecCCEEEEEEEeCCC-CCeeEEEccCCCCCCCCCCCCCC-CCCCCC
Q 010700 29 YFDFEVSYITASPLGVPQQVIAINGKFPGPTINVTTNNNVVVNVRNKLD-ESLLIHWSGIQQRRSSWQDGLLG-TNCPIP 106 (503)
Q Consensus 29 ~~~l~i~~~~~~~dG~~~~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DG~~~-~q~~i~ 106 (503)
.|+|+|++..+++||+.+.+++|||++|||+|++++||+|+|+|+|+|+ ++++|||||++|..++++||+|+ |||||+
T Consensus 10 ~~~l~v~~~~~~~~g~~r~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI~ 89 (538)
T TIGR03390 10 DHILRVTSDNIKIACSSRYSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPIP 89 (538)
T ss_pred cEEEEEEEeEeccCCeEEEEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCCC
Confidence 7899999999999999999999999999999999999999999999997 89999999999999999999999 999999
Q ss_pred CCCceEEEEEeC-CCceeeEEccCchhhhhcCceeeEEEEeCCCCCCCCCCCCCceEEEEeeeeeCCHHHHHHHhhcCC-
Q 010700 107 PKWNWTYQFQVK-DQVGSFFYFPSLHFQRASGGFGGFIINNRAIIPIPFDTPDGDITILIGDWYTRNHTALRKTLDAGK- 184 (503)
Q Consensus 107 PG~~~~y~f~~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~~~~~~~- 184 (503)
||++|+|+|+++ +++||||||||.+.|+. ||+|+|||+++... ++ .+|+|++|+|+||+++...++...+....
T Consensus 90 PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~~-~l~G~lIV~~~~~~--~~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~ 165 (538)
T TIGR03390 90 PGHFFDYEIKPEPGDAGSYFYHSHVGFQAV-TAFGPLIVEDCEPP--PY-KYDDERILLVSDFFSATDEEIEQGLLSTPF 165 (538)
T ss_pred CCCcEEEEEEecCCCCeeeEEecCCchhhh-cceeEEEEccCCcc--CC-CccCcEEEEEeCCCCCCHHHHHhhhhccCC
Confidence 999999999985 57999999999999986 59999999987543 33 45899999999999998776544332221
Q ss_pred -CCCCCCeEEECCcCCCCCCCCC--CCCCCCceeEEEeCCcEEEEEEeEeCCCCeeeEEEeCCc-EEEEEecCCccceee
Q 010700 185 -GLGMPDGVLINGKGPYQYNTTL--VPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHN-LLLAETEGSYTVQQN 260 (503)
Q Consensus 185 -~~~~~~~~liNG~~~~~~~~~~--~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~-~~via~DG~~~~p~~ 260 (503)
...+++.+||||+..+.|.... ....|..+.+++++||+|||||||+|..+.+.|+|+||+ |+|||+||.+++|..
T Consensus 166 ~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~~~~P~~ 245 (538)
T TIGR03390 166 TWSGETEAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGSYTKPAK 245 (538)
T ss_pred ccCCCCceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCCCCCceE
Confidence 2346789999999765542211 112355789999999999999999999999999999999 999999999999999
Q ss_pred ecEEEEcCCceEEEEEEeCCC-------CCcceEEEEeeeccccccCCCcceEEEEEecCCCCCCCCCCCCCCCCCCCcc
Q 010700 261 YTSLDIHVGQSYSFLVTMDQN-------ASTDYYIVASARFVNESQWKRVTGVAILHYTNSKGKARGPLPEGPNDEFDKT 333 (503)
Q Consensus 261 ~d~v~l~pGeR~dvlv~~~~~-------~g~~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~ 333 (503)
++.+.|++||||||+|+++++ ++ +||||+.....++ ...+.|||+|.+.........|..+.. ...
T Consensus 246 v~~l~l~~GqRydVlv~~~~~~~~~~~~~~-~Y~ir~~~~~~~~----~~~~~aiL~Y~~~~~~~~~~~p~~~~~--~~~ 318 (538)
T TIGR03390 246 IDHLQLGGGQRYSVLFKAKTEDELCGGDKR-QYFIQFETRDRPK----VYRGYAVLRYRSDKASKLPSVPETPPL--PLP 318 (538)
T ss_pred eCeEEEccCCEEEEEEECCCccccccCCCC-cEEEEEeecCCCC----cceEEEEEEeCCCCCCCCCCCCCCCCC--Ccc
Confidence 999999999999999999975 35 9999997654333 245789999976542211111111110 000
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCcCccceeEEEEEecCCCCc-cCCeEEEEecCccCCC--CCCchhccccccccC
Q 010700 334 FSMNQARSIRWNVSASGARPNPQGSFRYGSINVTEVYVLRNKPPEM-IDGKRRATLSGISFVN--PSTPIRLADWFKVKG 410 (503)
Q Consensus 334 ~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~t~~~~l~~~~~~~-~~~~~~~~iN~~s~~~--~~~P~l~~~~~~~~~ 410 (503)
....... +..+.+......+.-+ ....+++++.+...+... .++..+|++||++|.. |++|+|.....+...
T Consensus 319 ~~~~~~~--~~~l~pl~~~~~~~~~---~~~~~d~~~~l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~~~ 393 (538)
T TIGR03390 319 NSTYDWL--EYELEPLSEENNQDFP---TLDEVTRRVVIDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENGLP 393 (538)
T ss_pred Ccchhhh--heeeEecCccccCCCC---CCCcCceEEEEEccccccccCCeEEEEECCcccCCCCCCCchHHHHhcCCCC
Confidence 0000000 0112222111000000 012345666665543211 2456889999999985 789998765432110
Q ss_pred ccccCCCCCCCCCCCCcceEEEecCCCcEEEEEEeCCC--------CCCCceeecCCceEEEeeccCCCCCCC-CCCCCC
Q 010700 411 AYKLDFPTKPVTGPPRMETSVINGTYRGFMEVILQNND--------TKMHAYHMSGYAFFVVGMDYGEWTDNS-RGTYNK 481 (503)
Q Consensus 411 ~~~~~~~~~p~~~~~~~~~~~~~~~~g~~vdivi~N~~--------~~~HP~HLHGh~F~Vl~~g~g~~~~~~-~~~~n~ 481 (503)
... .+...+.......+++++.++.|++|||+|+|.+ ...||||||||+||||++|.|.|++.. ...+|+
T Consensus 394 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl 472 (538)
T TIGR03390 394 ATP-NYTAALANYGFDPETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLEN 472 (538)
T ss_pred cCC-CcccccccCCcCcCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhcc
Confidence 000 0000000111223556788899999999999974 478999999999999999999998643 236899
Q ss_pred CCCCccceEEeC----------CCCcccCcc
Q 010700 482 WDGIARTTTQAR----------RHLCSNRNY 502 (503)
Q Consensus 482 ~~p~~RDTv~v~----------~~g~~~~~~ 502 (503)
.||++|||++|| ++||.+|||
T Consensus 473 ~nP~rRDTv~vp~~~~~~~~~~~~~~~~ir~ 503 (538)
T TIGR03390 473 YTPVLRDTTMLYRYAVKVVPGAPAGWRAWRI 503 (538)
T ss_pred CCCCeecceeeccccccccccCCCceEEEEE
Confidence 999999999996 889999998
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=2e-67 Score=554.94 Aligned_cols=262 Identities=26% Similarity=0.410 Sum_probs=223.2
Q ss_pred EEEEEEEEEEEeCCCCceeEEEEEcCCCCCceEEEecCCEEEEEEEeCCCCCeeEEEccCCCCCCCCCCCCCC-CCCCCC
Q 010700 28 VYFDFEVSYITASPLGVPQQVIAINGKFPGPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLG-TNCPIP 106 (503)
Q Consensus 28 ~~~~l~i~~~~~~~dG~~~~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DG~~~-~q~~i~ 106 (503)
++|+|+|++..+.+||+.+.+|+|||++|||+|++++||+|+|+|+|+++++++|||||+++. +.+||+|+ +||+|+
T Consensus 46 ~~~~L~v~~~~~~~~G~~~~~~~~Ng~~PGP~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~--~~~DGvP~vt~~~I~ 123 (587)
T TIGR01480 46 TEFDLTIGETMVNFTGRARPAITVNGSIPGPLLRWREGDTVRLRVTNTLPEDTSIHWHGILLP--FQMDGVPGVSFAGIA 123 (587)
T ss_pred ceEEEEEEEEEEecCCeEEEEEEECCccCCceEEEECCCEEEEEEEcCCCCCceEEcCCCcCC--ccccCCCcccccccC
Confidence 799999999999999999999999999999999999999999999999999999999999764 57999998 999999
Q ss_pred CCCceEEEEEeCCCceeeEEccCchhhhhcCceeeEEEEeCCCCCCCCCCCCCceEEEEeeeeeCCHHHHHHHhh-----
Q 010700 107 PKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFIINNRAIIPIPFDTPDGDITILIGDWYTRNHTALRKTLD----- 181 (503)
Q Consensus 107 PG~~~~y~f~~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~~~~----- 181 (503)
||++|+|+|++ .++||||||||...|+++||+|+|||+++...+. .+|+|++|+|+||++.....+...+.
T Consensus 124 PG~s~~Y~f~~-~~~GTyWYHsH~~~q~~~GL~G~lIV~~~~~~p~---~~D~E~vl~L~Dw~~~~p~~i~~~l~~~~~~ 199 (587)
T TIGR01480 124 PGETFTYRFPV-RQSGTYWYHSHSGFQEQAGLYGPLIIDPAEPDPV---RADREHVVLLSDWTDLDPAALFRKLKVMAGH 199 (587)
T ss_pred CCCeEEEEEEC-CCCeeEEEecCchhHhhccceEEEEECCCccccC---CCCceEEEEeeecccCCHHHHHHhhhccccc
Confidence 99999999999 4899999999999999999999999998654333 45999999999999875544322110
Q ss_pred -----------------cCC---------C-------C------CCCCeEEECCcCCCCCCCCCCCCCCCceeEEEeCCc
Q 010700 182 -----------------AGK---------G-------L------GMPDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGK 222 (503)
Q Consensus 182 -----------------~~~---------~-------~------~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~ 222 (503)
.|. . . +....+||||+.. ...+++.+++|+
T Consensus 200 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~d~~dv~G~~~~~LiNG~~~-----------~~~~~~~v~~G~ 268 (587)
T TIGR01480 200 DNYYKRTVADFFRDVRNDGLKQTLADRKMWGQMRMTPTDLADVNGSTYTYLMNGTTP-----------AGNWTGLFRPGE 268 (587)
T ss_pred ccccccchhhhhhhhccccccccccccccccccccCCcccccccCccceEEEcCccC-----------CCCceEEECCCC
Confidence 010 0 0 0112478999875 224678999999
Q ss_pred EEEEEEeEeCCCCeeeEEEeCCcEEEEEecCCccceeeecEEEEcCCceEEEEEEeCCCCCcceEEEEeeeccccccCCC
Q 010700 223 TYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASARFVNESQWKR 302 (503)
Q Consensus 223 ~~rlRliN~g~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~ 302 (503)
+|||||||+|+.+.+.|+|+||+|+||++||++++|..++.+.|+|||||||+|++++ .| .|+|++....+.
T Consensus 269 rvRLR~INas~~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDVlV~~~~-~g-~~~i~a~~~~~~------ 340 (587)
T TIGR01480 269 KVRLRFINGSAMTYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVIVEPTG-DD-AFTIFAQDSDRT------ 340 (587)
T ss_pred EEEEEEEecCCCceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEEEEecCC-Cc-eEEEEEEecCCC------
Confidence 9999999999999999999999999999999999999999999999999999999873 45 899998765432
Q ss_pred cceEEEEEecCC
Q 010700 303 VTGVAILHYTNS 314 (503)
Q Consensus 303 ~~~~~il~y~~~ 314 (503)
....++|++.+.
T Consensus 341 ~~~~~~l~~~~~ 352 (587)
T TIGR01480 341 GYARGTLAVRLG 352 (587)
T ss_pred ceEEEEEecCCC
Confidence 356778887653
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=2.6e-63 Score=520.13 Aligned_cols=246 Identities=20% Similarity=0.254 Sum_probs=208.4
Q ss_pred eEEEEEEEEEEEeCCCCc-eeEEEEEcCCCCCceEEEecCCEEEEEEEeCCCCCeeEEEccCCCCCCCCCCCCCCCCCCC
Q 010700 27 FVYFDFEVSYITASPLGV-PQQVIAINGKFPGPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLGTNCPI 105 (503)
Q Consensus 27 ~~~~~l~i~~~~~~~dG~-~~~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DG~~~~q~~i 105 (503)
...|+|++++...+++|. ...+|+|||++|||+|++++||+|+|+|+|+|+++++|||||+++.+ .+||+| ||+|
T Consensus 45 ~~~~~L~~~~~~~~~~~~~~t~~~~yNg~~PGPtIr~~~Gd~v~v~~~N~L~~~ttiHwHGl~~~~--~~DG~p--q~~I 120 (523)
T PRK10965 45 RGRIQLTIQAGQSSFAGKTATATWGYNGNLLGPAVRLQRGKAVTVDITNQLPEETTLHWHGLEVPG--EVDGGP--QGII 120 (523)
T ss_pred CccEEEEEEEEEEEecCCceeEEEEECCCCCCceEEEECCCEEEEEEEECCCCCccEEcccccCCC--ccCCCC--CCCC
Confidence 346999999999999854 45699999999999999999999999999999999999999998864 599987 8999
Q ss_pred CCCCceEEEEEeCCCceeeEEccCc----hhhhhcCceeeEEEEeCCCCCCCCC--CCCCceEEEEeeeeeCCHHHHHHH
Q 010700 106 PPKWNWTYQFQVKDQVGSFFYFPSL----HFQRASGGFGGFIINNRAIIPIPFD--TPDGDITILIGDWYTRNHTALRKT 179 (503)
Q Consensus 106 ~PG~~~~y~f~~~~~~Gt~wyH~H~----~~q~~~Gl~G~liV~~~~~~~~~~~--~~d~e~~l~l~d~~~~~~~~~~~~ 179 (503)
+||++|+|+|++.+++||||||||. +.|+++||+|+|||+++.+.+.+.+ ...+|++|+|+||+++.+.++...
T Consensus 121 ~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~~~~~lp~~~~~~d~~lvlqD~~~~~~g~~~~~ 200 (523)
T PRK10965 121 APGGKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESLKLGLPKQWGVDDIPVILQDKRFSADGQIDYQ 200 (523)
T ss_pred CCCCEEEEEeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcCccccccCCcccCCCceeeEEEEeeeeCCCCceecc
Confidence 9999999999996568999999995 6999999999999999865433332 234689999999999766554322
Q ss_pred hhcC--CCCCCCCeEEECCcCCCCCCCCCCCCCCCceeEEEeCCcEEEEEEeEeCCCCeeeEEE-eCCcEEEEEecCCcc
Q 010700 180 LDAG--KGLGMPDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRI-QNHNLLLAETEGSYT 256 (503)
Q Consensus 180 ~~~~--~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~i-~gh~~~via~DG~~~ 256 (503)
.+.. .....++.++|||+.. |.+.++ +++|||||||+|..+.+.|++ +||+|+||+.||+++
T Consensus 201 ~~~~~~~~g~~gd~~lVNG~~~--------------p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa~DG~~l 265 (523)
T PRK10965 201 LDVMTAAVGWFGDTLLTNGAIY--------------PQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIASDGGLL 265 (523)
T ss_pred ccccccccCccCCeEEECCccc--------------ceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEEeCCCcc
Confidence 2211 1123578999999987 777775 679999999999999999998 899999999999986
Q ss_pred -ceeeecEEEEcCCceEEEEEEeCCCCCcceEEEEeee
Q 010700 257 -VQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASAR 293 (503)
Q Consensus 257 -~p~~~d~v~l~pGeR~dvlv~~~~~~g~~y~i~~~~~ 293 (503)
+|..++.+.|+|||||||+|++++ ++ +|++.+...
T Consensus 266 ~~P~~v~~l~lapGeR~dvlv~~~~-~~-~~~l~~~~~ 301 (523)
T PRK10965 266 AEPVKVSELPILMGERFEVLVDTSD-GK-AFDLVTLPV 301 (523)
T ss_pred cCccEeCeEEECccceEEEEEEcCC-Cc-eEEEEEecc
Confidence 799999999999999999999985 45 888887543
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=7.1e-61 Score=497.64 Aligned_cols=240 Identities=20% Similarity=0.312 Sum_probs=201.7
Q ss_pred EEEEEEEEEEeCCC-CceeEEEEEcCCCCCceEEEecCCEEEEEEEeCCCCCeeEEEccCCCCCCCCCCCCCCCCCCCCC
Q 010700 29 YFDFEVSYITASPL-GVPQQVIAINGKFPGPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLGTNCPIPP 107 (503)
Q Consensus 29 ~~~l~i~~~~~~~d-G~~~~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DG~~~~q~~i~P 107 (503)
.++|+++.....++ |.++.+|+|||++|||+||+++||+|+|+|+|+|+++++|||||+++... .+||++ ++|+|
T Consensus 47 ~~~l~~~~~~~~~~~g~~~~v~~~ng~~pGPtir~~~Gd~v~v~v~N~L~~~ttiHwHGl~~~~~-~~~g~~---~~I~P 122 (471)
T PRK10883 47 PLFLTLQRAHWSFTGGTKASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTEPVSMTVSGLQVPGP-LMGGPA---RMMSP 122 (471)
T ss_pred cEEEEEEEeEEEecCCceeeEEEECCcccCCeEEEECCCEEEEEEEeCCCCCCceeECCccCCCC-CCCCcc---ccCCC
Confidence 37999999999888 57889999999999999999999999999999999999999999998764 466654 88999
Q ss_pred CCceEEEEEeCCCceeeEEccCch----hhhhcCceeeEEEEeCCCCCCCCC-C-CCCceEEEEeeeeeCCHHHHHHHhh
Q 010700 108 KWNWTYQFQVKDQVGSFFYFPSLH----FQRASGGFGGFIINNRAIIPIPFD-T-PDGDITILIGDWYTRNHTALRKTLD 181 (503)
Q Consensus 108 G~~~~y~f~~~~~~Gt~wyH~H~~----~q~~~Gl~G~liV~~~~~~~~~~~-~-~d~e~~l~l~d~~~~~~~~~~~~~~ 181 (503)
|++|+|+|.+.+++||||||||.+ .|+++||+|+|||+++.+.+.+++ . ..+|++|+|+||.++....... ..
T Consensus 123 G~~~~y~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~~~~~~~p~~~~~~d~~l~l~D~~~~~~g~~~~-~~ 201 (471)
T PRK10883 123 NADWAPVLPIRQNAATCWYHANTPNRMAQHVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEY-NE 201 (471)
T ss_pred CCeEEEEEecCCCceeeEEccCCCCchhhhHhcCCeEEEEEeCCcccccCCcccCCCcceeEEeeeeeeccCCCccc-cc
Confidence 999999999866799999999954 599999999999999765433332 2 3458999999999976543221 11
Q ss_pred cCCCCCCCCeEEECCcCCCCCCCCCCCCCCCceeEEEeCCcEEEEEEeEeCCCCeeeEEE-eCCcEEEEEecCCcc-cee
Q 010700 182 AGKGLGMPDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRI-QNHNLLLAETEGSYT-VQQ 259 (503)
Q Consensus 182 ~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~i-~gh~~~via~DG~~~-~p~ 259 (503)
.......++.++|||+.. |.+++++| +|||||||+|..+.+.|++ +||+|+||+.||+++ +|.
T Consensus 202 ~~~~g~~gd~~lvNG~~~--------------p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~~~P~ 266 (471)
T PRK10883 202 PGSGGFVGDTLLVNGVQS--------------PYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLPAPV 266 (471)
T ss_pred cccCCccCCeeEECCccC--------------CeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEEeCCCcccCCc
Confidence 111234678999999987 88999875 7999999999999999999 899999999998775 799
Q ss_pred eecEEEEcCCceEEEEEEeCCCCCcceEEEE
Q 010700 260 NYTSLDIHVGQSYSFLVTMDQNASTDYYIVA 290 (503)
Q Consensus 260 ~~d~v~l~pGeR~dvlv~~~~~~g~~y~i~~ 290 (503)
.++.+.|+|||||||+|++++ ++ .+.+.+
T Consensus 267 ~~~~l~l~pGeR~dvlVd~~~-~~-~~~l~~ 295 (471)
T PRK10883 267 SVKQLSLAPGERREILVDMSN-GD-EVSITA 295 (471)
T ss_pred EeCeEEECCCCeEEEEEECCC-Cc-eEEEEC
Confidence 999999999999999999975 34 666655
No 16
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=1.3e-48 Score=385.31 Aligned_cols=265 Identities=17% Similarity=0.164 Sum_probs=217.5
Q ss_pred hcCCceEEEEEEEEEEEeC-CCCceeEEEEEcCCCCCceEEEecCCEEEEEEEeCCC--CCeeEEEccCCCCCCCCCCCC
Q 010700 22 SAADLFVYFDFEVSYITAS-PLGVPQQVIAINGKFPGPTINVTTNNNVVVNVRNKLD--ESLLIHWSGIQQRRSSWQDGL 98 (503)
Q Consensus 22 ~~~~~~~~~~l~i~~~~~~-~dG~~~~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~--~~~siH~HG~~~~~~~~~DG~ 98 (503)
.+...+++|+|++++.+++ .+|..+.+|+|||++|||+|++++||+|+|+|+|++. .++++||||. .++||+
T Consensus 22 ~~~~~~~~~~l~a~~~~~~~~~G~~~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~-----~~~dg~ 96 (311)
T TIGR02376 22 RSGPKVVEVTMTIEEKKMVIDDGVTYQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAA-----TGALGG 96 (311)
T ss_pred cCCCcEEEEEEEEEEEEEEeCCCeEEEEEEECCcccCceEEEECCCEEEEEEEeCCCCCCceeeeecCC-----CccCCC
Confidence 3455789999999999987 4699999999999999999999999999999999986 5899999996 247887
Q ss_pred CC-CCCCCCCCCceEEEEEeCCCceeeEEccC----chhhhhcCceeeEEEEeCCCCCCCCCCCCCceEEEEeeeeeCCH
Q 010700 99 LG-TNCPIPPKWNWTYQFQVKDQVGSFFYFPS----LHFQRASGGFGGFIINNRAIIPIPFDTPDGDITILIGDWYTRNH 173 (503)
Q Consensus 99 ~~-~q~~i~PG~~~~y~f~~~~~~Gt~wyH~H----~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~ 173 (503)
+. +| |+||++++|+|++ +++|||||||| +..|+.+||+|+|||++++..+ ..|+|++|+++||+++..
T Consensus 97 ~~~~~--I~PG~t~ty~F~~-~~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~~~----~~d~e~~l~l~d~~~~~~ 169 (311)
T TIGR02376 97 AALTQ--VNPGETATLRFKA-TRPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLP----EYDKEYYIGESDLYTPKD 169 (311)
T ss_pred Cccee--ECCCCeEEEEEEc-CCCEEEEEEcCCCCchhHHhhcCcceEEEeeccCCCc----CcceeEEEeeeeEecccc
Confidence 76 55 9999999999998 58999999999 4679999999999999975422 458999999999999754
Q ss_pred HHHHHHhh-c-C-CCCCCCCeEEECCcCCCCCCCCCCCCCCCceeEEEeCCcEEEEEEeEeCCCCeeeEEEeCCcEEEEE
Q 010700 174 TALRKTLD-A-G-KGLGMPDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAE 250 (503)
Q Consensus 174 ~~~~~~~~-~-~-~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~via 250 (503)
........ . . .....++.++|||+.... .+.+++++|+++||||+|++..+.+.||++||.+++|+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~iNG~~~~~-----------~~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~ 238 (311)
T TIGR02376 170 EGEGGAYEDDVAAMRTLTPTHVVFNGAVGAL-----------TGDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVW 238 (311)
T ss_pred ccccccccchHHHHhcCCCCEEEECCccCCC-----------CCCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEE
Confidence 32110000 0 0 012457899999996422 15678999999999999999988999999999999999
Q ss_pred ecCCccceee--ecEEEEcCCceEEEEEEeCCCCCcceEEEEeeeccccccCCCcceEEEEEecCCC
Q 010700 251 TEGSYTVQQN--YTSLDIHVGQSYSFLVTMDQNASTDYYIVASARFVNESQWKRVTGVAILHYTNSK 315 (503)
Q Consensus 251 ~DG~~~~p~~--~d~v~l~pGeR~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~ 315 (503)
.||.++.+.. ++++.|+||||+||+|++++ +| .|+++++...... +....|+|.|++..
T Consensus 239 ~DG~~~~~~~~~~~~~~i~PG~R~dv~v~~~~-pG-~y~~~~~~~~~~~----~~g~~~~i~~~g~~ 299 (311)
T TIGR02376 239 VTGKFANPPNRDVETWFIPGGSAAAALYTFEQ-PG-VYAYVDHNLIEAF----EKGAAAQVKVEGAW 299 (311)
T ss_pred ECCcccCCCCCCcceEEECCCceEEEEEEeCC-Ce-EEEEECcHHHHHH----hCCCEEEEEECCCC
Confidence 9999997644 89999999999999999996 57 8999887653321 13467999998754
No 17
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.5e-47 Score=398.19 Aligned_cols=370 Identities=21% Similarity=0.247 Sum_probs=259.0
Q ss_pred CCCCceeEEEEEcCCCCCceEEEecCCEEEEEEEeCCCCCeeEEEccCCCCCCCCCCCCCC-CCCCCCCCCceEEEEEeC
Q 010700 40 SPLGVPQQVIAINGKFPGPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLG-TNCPIPPKWNWTYQFQVK 118 (503)
Q Consensus 40 ~~dG~~~~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DG~~~-~q~~i~PG~~~~y~f~~~ 118 (503)
..++.....+.+||++|||+|++++||+|+|+++|++.+.+++||||+..+ +.+||++. +++++.||++++|.|+.+
T Consensus 46 ~~~~~~~~~~~~~g~~~gP~i~~~~Gd~v~l~~~N~l~~~t~vh~HG~~~p--~~~dG~~~~~~~~~~~~~~~~y~f~~~ 123 (451)
T COG2132 46 FAPGTGATVWGYNGALPGPTIRVKKGDTVTLDLTNRLLVDTSVHWHGLPVP--GEMDGVPPLTQIPPGPGETPTYTFTQD 123 (451)
T ss_pred eecCCCceeEEecccccCceEEEecCCEEEEEEEeCCCCCceEEEcCcccC--ccccCCCcccccCCCCCCcEEEeecCC
Confidence 345677889999999999999999999999999999988899999998665 68999887 999999999999999994
Q ss_pred CCceeeEEccCchhhhhcCceeeEEEEeCCCCCCCCCCCCCceEEEEeeeeeCCHHHHHHHhhcCCCCCCCCeEEECCcC
Q 010700 119 DQVGSFFYFPSLHFQRASGGFGGFIINNRAIIPIPFDTPDGDITILIGDWYTRNHTALRKTLDAGKGLGMPDGVLINGKG 198 (503)
Q Consensus 119 ~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~ 198 (503)
.+||||||+|.+.|+++||+|++||+++...+. .+|++.+++..+|........... .........+..+|||+.
T Consensus 124 -~~gT~wyh~H~~~Q~~~Gl~G~~II~~~~~~~~---~~d~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~vnG~~ 198 (451)
T COG2132 124 -VPGTYWYHPHTHGQVYDGLAGALIIEDENSEPL---GVDDEPVILQDDWLDEDGTDLYQE-GPAMGGFPGDTLLVNGAI 198 (451)
T ss_pred -CCcceEeccCCCchhhcccceeEEEeCCCCCCC---CCCceEEEEEeeeecCCCCccccC-CccccCCCCCeEEECCCc
Confidence 688999999999999999999999999865443 448888888888876544332211 011123356899999976
Q ss_pred CCCCCCCCCCCCCCceeEEEeCCcEEEEEEeEeCCCCeeeEEEeCCcEEEEEecCCccceeeecEEEEcCCceEEEEEEe
Q 010700 199 PYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTSLDIHVGQSYSFLVTM 278 (503)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dvlv~~ 278 (503)
. +.+.++. ++|||||+|++..+.+.+++.+++|+||+.||.++++..+|.+.|+||||+||++++
T Consensus 199 ~--------------p~~~~~~-g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~er~~v~v~~ 263 (451)
T COG2132 199 L--------------PFKAVPG-GVVRLRLLNAGNARTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPGERYEVLVDM 263 (451)
T ss_pred c--------------ceeecCC-CeEEEEEEecCCceEEEEEecCceEEEEEeCCcCcCceeeeeEEecCcceEEEEEEc
Confidence 5 5565554 569999999998778999999999999999999998888999999999999999999
Q ss_pred CCCCCcceEEEEeeeccccccCCCcceEEEEEecCCCCCCCCCC----CCCCCCCCCccccccccccccccCCCCCCCCC
Q 010700 279 DQNASTDYYIVASARFVNESQWKRVTGVAILHYTNSKGKARGPL----PEGPNDEFDKTFSMNQARSIRWNVSASGARPN 354 (503)
Q Consensus 279 ~~~~g~~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~----p~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 354 (503)
++ ++ .+.+.+....... ...+........ ..+.+. ...+.. +. .......... ... ..
T Consensus 264 ~~-~~-~~~l~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--d~-~~~~~~~~~~----~~~--~~ 325 (451)
T COG2132 264 ND-GG-AVTLTALGEDMPD------TLKGFRAPNPIL-TPSYPVLNGRVGAPTG--DM-ADHAPVGLLV----TIL--VE 325 (451)
T ss_pred CC-CC-eEEEEeccccCCc------eeeeeecccccc-ccccccccccccCCCc--ch-hhccccccch----hhc--CC
Confidence 85 34 6777665421111 111111111100 000000 001110 00 0000000000 000 00
Q ss_pred CCCCCCcCccceeEEEEEecCCCCccCCeEEEEecCccCCCCCCchhccccccccCccccCCCCCCCCCCCCcceEEEec
Q 010700 355 PQGSFRYGSINVTEVYVLRNKPPEMIDGKRRATLSGISFVNPSTPIRLADWFKVKGAYKLDFPTKPVTGPPRMETSVING 434 (503)
Q Consensus 355 p~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~iN~~s~~~~~~P~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 434 (503)
+. ......+.+. ...+...|.+|++.|... ...+.+
T Consensus 326 ~~-------~~~~~~~~l~-----~~~~~~~~~~n~~~~~~~--------------------------------~~~~~~ 361 (451)
T COG2132 326 PG-------PNRDTDFHLI-----GGIGGYVWAINGKAFDDN--------------------------------RVTLIA 361 (451)
T ss_pred Cc-------ccccccchhh-----cccccccccccCccCCCC--------------------------------cCceee
Confidence 00 0000011111 111245577777776421 123456
Q ss_pred CCCcEEEEEEeCCCCCCCceeecCCceEEEeeccCCCCCCCCCCCCCCCCCccceEEeCCCCcccCcc
Q 010700 435 TYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQARRHLCSNRNY 502 (503)
Q Consensus 435 ~~g~~vdivi~N~~~~~HP~HLHGh~F~Vl~~g~g~~~~~~~~~~n~~~p~~RDTv~v~~~g~~~~~~ 502 (503)
+.|++++|+|.|.+.+.|||||||+.|+|++.+ . .+-...+.||||+.+.++....+||
T Consensus 362 ~~G~~~~~~i~n~~~~~HP~HlHg~~F~v~~~~-~--------~~~~~~~~~kDTv~v~~~~~~~v~~ 420 (451)
T COG2132 362 KAGTRERWVLTNDTPMPHPFHLHGHFFQVLSGD-A--------PAPGAAPGWKDTVLVAPGERLLVRF 420 (451)
T ss_pred cCCCEEEEEEECCCCCccCeEEcCceEEEEecC-C--------CcccccCccceEEEeCCCeEEEEEE
Confidence 889999999999999999999999999999986 1 1222357899999999998888876
No 18
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=100.00 E-value=1.5e-36 Score=256.09 Aligned_cols=116 Identities=41% Similarity=0.782 Sum_probs=108.4
Q ss_pred EEEEEEeCCCCceeEEEEEcCCCCCceEEEecCCEEEEEEEeCCCCCeeEEEccCCCCCCCCCCCCCC-CCCCCCCCCce
Q 010700 33 EVSYITASPLGVPQQVIAINGKFPGPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLG-TNCPIPPKWNW 111 (503)
Q Consensus 33 ~i~~~~~~~dG~~~~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DG~~~-~q~~i~PG~~~ 111 (503)
+|++.++.++|..+.+|+|||++|||+|++++||+|+|+|+|+++++++|||||+++...+++||+++ +||+|+||+++
T Consensus 1 ~v~~~~~~~~~~~~~~~~~ng~~pGPtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~ 80 (117)
T PF07732_consen 1 NVTETTVSPDGGTRKVWTYNGQFPGPTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESF 80 (117)
T ss_dssp -EEEEEEETTSTEEEEEEETTBSSEEEEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEE
T ss_pred CeeEEEEEeCCcEEEEEEECCCCCCCEEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecce
Confidence 47899999998889999999999999999999999999999999999999999999988888999998 99999999999
Q ss_pred EEEEEeCCCceeeEEccCchhhhhcCceeeEEEEeCC
Q 010700 112 TYQFQVKDQVGSFFYFPSLHFQRASGGFGGFIINNRA 148 (503)
Q Consensus 112 ~y~f~~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~ 148 (503)
+|+|++++++||||||||...|..+||+|+|||++++
T Consensus 81 ~Y~~~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~~ 117 (117)
T PF07732_consen 81 TYEFTANQQAGTYWYHSHVHGQQVMGLYGAIIVEPPE 117 (117)
T ss_dssp EEEEEESSCSEEEEEEECSTTHHHTTEEEEEEEE-TT
T ss_pred eeeEeeeccccceeEeeCCCchhcCcCEEEEEEcCCC
Confidence 9999997559999999999888889999999999863
No 19
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.96 E-value=2e-28 Score=219.66 Aligned_cols=154 Identities=32% Similarity=0.539 Sum_probs=124.3
Q ss_pred CceEEEEeeeeeCCHHHHHH-HhhcC----CCCCCCCeEEECCcCCCCCCCCCCCCCCCceeEEEeCCcEEEEEEeEeCC
Q 010700 159 GDITILIGDWYTRNHTALRK-TLDAG----KGLGMPDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGI 233 (503)
Q Consensus 159 ~e~~l~l~d~~~~~~~~~~~-~~~~~----~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~ 233 (503)
+|++|+++||+++....+.. .+..+ ...+++++++|||++.+.|..+.. ..+..+.+++++|++|||||||+|+
T Consensus 1 ~e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~-~~~~~~~~~v~~g~~~rlRliNa~~ 79 (159)
T PF00394_consen 1 EEYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGRFDCSSADY-TGGEPPVIKVKPGERYRLRLINAGA 79 (159)
T ss_dssp GGGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTCBTTCTTGS-TTSTSGEEEEETTTEEEEEEEEESS
T ss_pred CeEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCccccccccccc-cccccceEEEcCCcEEEEEEEeccC
Confidence 58899999999987765543 32221 235689999999999988865432 3345799999999999999999999
Q ss_pred CCeeeEEEeCCcEEEEEecCCccceeeecEEEEcCCceEEEEEEeCCCCCcceEEEEeeeccccccCCCcceEEEEEecC
Q 010700 234 STSLNFRIQNHNLLLAETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASARFVNESQWKRVTGVAILHYTN 313 (503)
Q Consensus 234 ~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dvlv~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~~il~y~~ 313 (503)
...+.|+|+||+|+|||+||.+++|..++++.|+|||||||+|++++++| +|||++..............+.|||+|++
T Consensus 80 ~~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~g-~y~i~~~~~~~~~~~~~~~~~~aiL~Y~~ 158 (159)
T PF00394_consen 80 STSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPPG-NYWIRASYQHDSINDPQNGNALAILRYDG 158 (159)
T ss_dssp S-BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCSS-EEEEEEEESSSSSHSHGGGTTEEEEEETT
T ss_pred CeeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCCC-eEEEEEecccCCCccCCCcEEEEEEEECC
Confidence 99999999999999999999999999999999999999999999998667 99999963222222234477899999986
Q ss_pred C
Q 010700 314 S 314 (503)
Q Consensus 314 ~ 314 (503)
+
T Consensus 159 ~ 159 (159)
T PF00394_consen 159 A 159 (159)
T ss_dssp S
T ss_pred C
Confidence 3
No 20
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.77 E-value=3.4e-18 Score=149.76 Aligned_cols=103 Identities=17% Similarity=0.222 Sum_probs=82.8
Q ss_pred CCCceeEEEEEcCCCCCceEEEecCCEEEEEEEeCCC---CCeeEEEccCCCCCCCCCCCCCC-CCCCCCCC----Cc--
Q 010700 41 PLGVPQQVIAINGKFPGPTINVTTNNNVVVNVRNKLD---ESLLIHWSGIQQRRSSWQDGLLG-TNCPIPPK----WN-- 110 (503)
Q Consensus 41 ~dG~~~~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~---~~~siH~HG~~~~~~~~~DG~~~-~q~~i~PG----~~-- 110 (503)
..+....-+.++| .++|+|++++||+|+|+|+|.+. ....||+||......+.+||++. ++|+|.|+ +.
T Consensus 36 ~~~~~~~~f~~~~-~~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~ 114 (148)
T TIGR03095 36 MPGPSMYSFEIHD-LKNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGY 114 (148)
T ss_pred CCCCCceeEEecC-CCCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccce
Confidence 3456666788888 45899999999999999999954 44677777776555566999997 99988874 22
Q ss_pred eEEEEEeCCCceeeEEccCchhhhhcCceeeEEEE
Q 010700 111 WTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFIIN 145 (503)
Q Consensus 111 ~~y~f~~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~ 145 (503)
.++.|+++ ++||||||||...|+.+||+|+|||+
T Consensus 115 ~~~tf~f~-~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 115 TDFTYHFS-TAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred eEEEEECC-CCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 35566664 79999999999999999999999995
No 21
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.68 E-value=2.3e-17 Score=144.66 Aligned_cols=79 Identities=27% Similarity=0.350 Sum_probs=71.2
Q ss_pred CCCcceEEEecCCCcEEEEEEeCCCCCCCceeecCCceEEEeeccCCCCCCCCCCCCCCCCCccceEEeCCCCcccCcc
Q 010700 424 PPRMETSVINGTYRGFMEVILQNNDTKMHAYHMSGYAFFVVGMDYGEWTDNSRGTYNKWDGIARTTTQARRHLCSNRNY 502 (503)
Q Consensus 424 ~~~~~~~~~~~~~g~~vdivi~N~~~~~HP~HLHGh~F~Vl~~g~g~~~~~~~~~~n~~~p~~RDTv~v~~~g~~~~~~ 502 (503)
..+.+..++.++.|++|||+|+|.+...||||||||+|+|++++.+.++......+++.+|.+|||+.|+++||.+|||
T Consensus 28 ~~~~~~~~~~~~~g~~v~~~l~N~~~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~ 106 (138)
T PF07731_consen 28 PFFGNTPVIEVKNGDVVEIVLQNNGSMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRF 106 (138)
T ss_dssp TSSSTTSEEEEETTSEEEEEEEECTTSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEE
T ss_pred ccCCCcceEEEeCCCEEEEEEECCCCCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEE
Confidence 4455778899999999999999999999999999999999999988776555567899999999999999999999998
No 22
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.67 E-value=2.9e-16 Score=166.75 Aligned_cols=100 Identities=15% Similarity=0.250 Sum_probs=86.2
Q ss_pred ceeEEEEEcCCCCCc--eEEEecCCEEEEEEEeCCCCCeeEEEccCCCCCCCCCCCCC---CCCCCCCCCCceEEEEEeC
Q 010700 44 VPQQVIAINGKFPGP--TINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLL---GTNCPIPPKWNWTYQFQVK 118 (503)
Q Consensus 44 ~~~~~~~~Ng~~pgP--~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DG~~---~~q~~i~PG~~~~y~f~~~ 118 (503)
..+.+|+|||+.+++ .|++++||+|+|+|.|.+..++.|||||+.+... ..||.. .....|.||++++|+|.+
T Consensus 483 m~~~~wtiNG~~~~~~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~-~~~G~~~~~~dTv~V~Pg~t~~~~f~a- 560 (587)
T TIGR01480 483 MERFAWSFDGEAFGLKTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELE-DGQGEFQVRKHTVDVPPGGKRSFRVTA- 560 (587)
T ss_pred CceeEEEECCccCCCCCceEecCCCEEEEEEECCCCCCcceeEcCceeeee-cCCCcccccCCceeeCCCCEEEEEEEC-
Confidence 457789999998874 7999999999999999999999999999976432 346642 234789999999999999
Q ss_pred CCceeeEEccCchhhhhcCceeeEEEE
Q 010700 119 DQVGSFFYFPSLHFQRASGGFGGFIIN 145 (503)
Q Consensus 119 ~~~Gt~wyH~H~~~q~~~Gl~G~liV~ 145 (503)
+++|+||||||...|...||++.|.|.
T Consensus 561 d~pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 561 DALGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred CCCeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 689999999999999999999999873
No 23
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=99.42 E-value=1.5e-12 Score=110.09 Aligned_cols=105 Identities=26% Similarity=0.162 Sum_probs=82.3
Q ss_pred HHHHHHHhhhhcCCceEEEEEEEE--EEEe---CCCCceeEEE-EEcCCCCCceEEEecCCEEEEEEEeCCCCCe--eEE
Q 010700 12 IHIALLASLCSAADLFVYFDFEVS--YITA---SPLGVPQQVI-AINGKFPGPTINVTTNNNVVVNVRNKLDESL--LIH 83 (503)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~l~i~--~~~~---~~dG~~~~~~-~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~--siH 83 (503)
+..+.|+.+..+.++.++|+++|. +..+ ...|+....+ ++|+++..+.|+|++||+|++++.|..+.++ .++
T Consensus 9 ~~~~~~~~~~~~~~~~~~f~~~i~~~~~~~~~~~~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vtN~d~~~H~f~i~ 88 (135)
T TIGR03096 9 GFALGLLLMGTAQAAEQSFTVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVENKSPISEGFSID 88 (135)
T ss_pred HHHHHHhhccchhhccceeEEEEeccccEeeEEEeCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEEeCCCCccceEEC
Confidence 334445556666667889999999 6655 3568777666 9999999999999999999999999876544 444
Q ss_pred EccCCCCCCCCCCCCCCCCCCCCCCCceEEEEEeCCCceeeEEccCch
Q 010700 84 WSGIQQRRSSWQDGLLGTNCPIPPKWNWTYQFQVKDQVGSFFYFPSLH 131 (503)
Q Consensus 84 ~HG~~~~~~~~~DG~~~~q~~i~PG~~~~y~f~~~~~~Gt~wyH~H~~ 131 (503)
+||+ +..|+||++.+|+|++ +++|+|||||-.+
T Consensus 89 ~~gi--------------s~~I~pGet~TitF~a-dKpG~Y~y~C~~H 121 (135)
T TIGR03096 89 AYGI--------------SEVIKAGETKTISFKA-DKAGAFTIWCQLH 121 (135)
T ss_pred CCCc--------------ceEECCCCeEEEEEEC-CCCEEEEEeCCCC
Confidence 4443 2448999999999998 6999999999765
No 24
>PRK10965 multicopper oxidase; Provisional
Probab=99.39 E-value=4.1e-11 Score=126.62 Aligned_cols=233 Identities=15% Similarity=0.115 Sum_probs=142.0
Q ss_pred eeEEEEEcCCCCCceEEEecCCEEEEEEEeCCC-CCeeEEE-ccCCCCCCCCCCCCCC------CCCCCCCCCceEEEEE
Q 010700 45 PQQVIAINGKFPGPTINVTTNNNVVVNVRNKLD-ESLLIHW-SGIQQRRSSWQDGLLG------TNCPIPPKWNWTYQFQ 116 (503)
Q Consensus 45 ~~~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~-~~~siH~-HG~~~~~~~~~DG~~~------~q~~i~PG~~~~y~f~ 116 (503)
....+++||+. .|.+.++ |.++|+|+.|... +...+.+ .|..+.. .+.||.+. ....|.|||+++..++
T Consensus 211 ~gd~~lVNG~~-~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~v-Ia~DG~~l~~P~~v~~l~lapGeR~dvlv~ 287 (523)
T PRK10965 211 FGDTLLTNGAI-YPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYV-IASDGGLLAEPVKVSELPILMGERFEVLVD 287 (523)
T ss_pred cCCeEEECCcc-cceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEE-EEeCCCcccCccEeCeEEECccceEEEEEE
Confidence 34678999996 6888885 6799999999965 5567776 4543322 57999542 2355899999999999
Q ss_pred eCCCceeeEEccCchhhhh------cCceeeEEEEeC--C-CCCCC--------CCC----CCCceEEEEeeeee-----
Q 010700 117 VKDQVGSFFYFPSLHFQRA------SGGFGGFIINNR--A-IIPIP--------FDT----PDGDITILIGDWYT----- 170 (503)
Q Consensus 117 ~~~~~Gt~wyH~H~~~q~~------~Gl~G~liV~~~--~-~~~~~--------~~~----~d~e~~l~l~d~~~----- 170 (503)
+. +.|.++...-...+.. +.-+-.+.|... . ....| .+. ..+.+.+.+..+..
T Consensus 288 ~~-~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~m~ 366 (523)
T PRK10965 288 TS-DGKAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLISASGTLPDSLASLPALPSLEGLTVRRLQLSMDPRLDMMGMQ 366 (523)
T ss_pred cC-CCceEEEEEecccCcccccccCCCceeEEEEeccCcCCCCcCChhhccCCCCCcccccceeEEEEeeccccchhhhh
Confidence 85 4666666543111110 001112333311 1 00111 000 01222333321100
Q ss_pred ----C-CHHHHHH--------Hh--------hcCC--CCC---CCCeEEECCcCCCCCCCCCCCCCCCceeEEEeCCcEE
Q 010700 171 ----R-NHTALRK--------TL--------DAGK--GLG---MPDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTY 224 (503)
Q Consensus 171 ----~-~~~~~~~--------~~--------~~~~--~~~---~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~ 224 (503)
. ....... .+ ..+. ... ....++|||+.+. .+.+.++++.|++.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~----------~~~~~~~~~~G~~e 436 (523)
T PRK10965 367 MLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAFD----------MNKPMFAAKKGQYE 436 (523)
T ss_pred hccccccccccccccccccccccccccccccccccccccccccccccccCCCeECC----------CCCcceecCCCCEE
Confidence 0 0000000 00 0000 000 0112589999872 23477899999999
Q ss_pred EEEEeEeCCCCeeeEEEeCCcEEEEEecCCccc---eeeecEEEEcCCceEEEEEEeCCCC---CcceEEEEeee
Q 010700 225 RIRVHNVGISTSLNFRIQNHNLLLAETEGSYTV---QQNYTSLDIHVGQSYSFLVTMDQNA---STDYYIVASAR 293 (503)
Q Consensus 225 rlRliN~g~~~~~~~~i~gh~~~via~DG~~~~---p~~~d~v~l~pGeR~dvlv~~~~~~---g~~y~i~~~~~ 293 (503)
+|+|+|.+....|+|||||+.|+|++.||.+.. +.+.|+|.+.+ +++++++++++++ | .|.++|+..
T Consensus 437 ~w~i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g-~~~~HCHiL 509 (523)
T PRK10965 437 RWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEH-AYMAHCHLL 509 (523)
T ss_pred EEEEEeCCCCCccCeEEeCcEEEEEEecCCCCCccccccccEEEECC-cEEEEEEEecCCCCCCC-CEEEEeCch
Confidence 999999986558999999999999999998765 35689999976 8899999998543 4 677777764
No 25
>PRK10883 FtsI repressor; Provisional
Probab=99.31 E-value=1.1e-10 Score=122.19 Aligned_cols=222 Identities=12% Similarity=0.092 Sum_probs=134.8
Q ss_pred ceeEEEEEcCCCCCceEEEecCCEEEEEEEeCCC-CCeeEEE-ccCCCCCCCCCCCCCC------CCCCCCCCCceEEEE
Q 010700 44 VPQQVIAINGKFPGPTINVTTNNNVVVNVRNKLD-ESLLIHW-SGIQQRRSSWQDGLLG------TNCPIPPKWNWTYQF 115 (503)
Q Consensus 44 ~~~~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~-~~~siH~-HG~~~~~~~~~DG~~~------~q~~i~PG~~~~y~f 115 (503)
.....+++||+. .|.|.++.| ++|+|+.|... ....+++ .|..... .+.||... .+..|.|||+++..+
T Consensus 207 ~~gd~~lvNG~~-~p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~v-Ia~DGg~~~~P~~~~~l~l~pGeR~dvlV 283 (471)
T PRK10883 207 FVGDTLLVNGVQ-SPYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHV-IAGDQGFLPAPVSVKQLSLAPGERREILV 283 (471)
T ss_pred ccCCeeEECCcc-CCeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEE-EEeCCCcccCCcEeCeEEECCCCeEEEEE
Confidence 345679999996 699999875 89999999976 5678888 6654332 57896432 245589999999999
Q ss_pred EeCCCceeeEEccCchhhhhcCcee------------eEEEEeCCCCCCCCCCCCCceEEEEeeeeeCCHHHHHH-Hhhc
Q 010700 116 QVKDQVGSFFYFPSLHFQRASGGFG------------GFIINNRAIIPIPFDTPDGDITILIGDWYTRNHTALRK-TLDA 182 (503)
Q Consensus 116 ~~~~~~Gt~wyH~H~~~q~~~Gl~G------------~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~-~~~~ 182 (503)
++. +.+.+..++-.......++.+ .+-++...... +. ...++..+............. .+..
T Consensus 284 d~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~p~~l~~~~~~~~~~~~~~~~~l 358 (471)
T PRK10883 284 DMS-NGDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLP-LV---TDNLPMRLLPDEIMEGSPIRSREISL 358 (471)
T ss_pred ECC-CCceEEEECCCccccccccccccCCccccccceeEEEEcccccc-CC---CCcCChhhcCCCCCCCCCcceEEEEe
Confidence 984 456666665311111011111 11111111000 00 000000000000000000000 0000
Q ss_pred CCCCCCCCeEEECCcCCCCCCCCCCCCCCCceeEEEeCCcEEEEEEeEeCCCCeeeEEEeCCcEEEEEecCCccce---e
Q 010700 183 GKGLGMPDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQ---Q 259 (503)
Q Consensus 183 ~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~via~DG~~~~p---~ 259 (503)
+ .+.+.|||+.+. ...+.++++.|++++|+|.|. + .|+||||||.|+|++.||....+ .
T Consensus 359 ~-----~~~~~INg~~~~----------~~~~~~~~~~g~~e~W~~~n~--~-~HP~HlHg~~FqVl~~~G~~~~~~~~g 420 (471)
T PRK10883 359 G-----DDLPGINGALWD----------MNRIDVTAQQGTWERWTVRAD--M-PQAFHIEGVMFLIRNVNGAMPFPEDRG 420 (471)
T ss_pred c-----CCcCccCCcccC----------CCcceeecCCCCEEEEEEECC--C-CcCEeECCccEEEEEecCCCCCccccC
Confidence 0 123479999872 123457899999999999885 2 79999999999999999986543 4
Q ss_pred eecEEEEcCCceEEEEEEeCCCCCc--ceEEEEeee
Q 010700 260 NYTSLDIHVGQSYSFLVTMDQNAST--DYYIVASAR 293 (503)
Q Consensus 260 ~~d~v~l~pGeR~dvlv~~~~~~g~--~y~i~~~~~ 293 (503)
+.|+|.+ + +++.+++++++.++. .|..+|+..
T Consensus 421 wkDTV~v-~-~~v~i~~~f~~~~~~~~~~m~HCHiL 454 (471)
T PRK10883 421 WKDTVWV-D-GQVELLVYFGQPSWAHFPFLFYSQTL 454 (471)
T ss_pred cCcEEEc-C-CeEEEEEEecCCCCCCCcEEeecccc
Confidence 5799999 4 469999999976642 476777664
No 26
>PLN02835 oxidoreductase
Probab=99.23 E-value=1.4e-09 Score=115.40 Aligned_cols=243 Identities=12% Similarity=0.110 Sum_probs=147.6
Q ss_pred eEEEEEcCCCCCceEEEecCCEEEEEEEeCCC-CCeeEEEccCCCCCCCCCCCCCC-----CCCCCCCCCceEEEEEeCC
Q 010700 46 QQVIAINGKFPGPTINVTTNNNVVVNVRNKLD-ESLLIHWSGIQQRRSSWQDGLLG-----TNCPIPPKWNWTYQFQVKD 119 (503)
Q Consensus 46 ~~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DG~~~-----~q~~i~PG~~~~y~f~~~~ 119 (503)
...+++||+. .+++++++|+++|+|+.|... ....+|+.|..+.. .+.||.+. ....|.||||++..+++.+
T Consensus 191 ~d~~liNG~~-~~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~V-I~~DG~~v~p~~~~~l~i~~GqRydvlv~~~~ 268 (539)
T PLN02835 191 PDGVLINGQT-QSTFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKL-VEVEGSHTIQNIYDSLDVHVGQSVAVLVTLNQ 268 (539)
T ss_pred CceEEEcccc-CceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEE-EEECCccCCCceeeEEEECcCceEEEEEEcCC
Confidence 3578999997 489999999999999999965 57889999987654 68999874 2345999999999999965
Q ss_pred CceeeEEccCchhh-hhcCceeeEEEEeCCC---CCCCC-CCCCC--c------eEEEEeeeeeCCHH---H-H-HH---
Q 010700 120 QVGSFFYFPSLHFQ-RASGGFGGFIINNRAI---IPIPF-DTPDG--D------ITILIGDWYTRNHT---A-L-RK--- 178 (503)
Q Consensus 120 ~~Gt~wyH~H~~~q-~~~Gl~G~liV~~~~~---~~~~~-~~~d~--e------~~l~l~d~~~~~~~---~-~-~~--- 178 (503)
.+|.||.+.-.... ......+.|-.+.... .+.|. +..+. + ....+......... . . ..
T Consensus 269 ~~g~y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~ 348 (539)
T PLN02835 269 SPKDYYIVASTRFTRQILTATAVLHYSNSRTPASGPLPALPSGELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPT 348 (539)
T ss_pred CCCcEEEEEEccccCCCcceEEEEEECCCCCCCCCCCCCCCccccccccchhhccccccCccccCCCCCccccccccCCC
Confidence 58999998532111 1111233333322111 01111 00000 0 00001110000000 0 0 00
Q ss_pred -H--hhc-CCCCCCCCeEEECCcCCCCCCCCC-------------------CCCCC----CceeEEEeCCcEEEEEEeEe
Q 010700 179 -T--LDA-GKGLGMPDGVLINGKGPYQYNTTL-------------------VPDGI----DYETIEVHPGKTYRIRVHNV 231 (503)
Q Consensus 179 -~--~~~-~~~~~~~~~~liNG~~~~~~~~~~-------------------~~~~~----~~~~~~v~~G~~~rlRliN~ 231 (503)
. ... .........|.+||..+..-.... .+.++ ..-.+.++.|+.+.|-|-|.
T Consensus 349 ~~~~~~~~~~~~~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~Veivi~N~ 428 (539)
T PLN02835 349 KTIVLANSAPLINGKQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSIQSLPSGGPAFVATSVMQTSLHDFLEVVFQNN 428 (539)
T ss_pred ceEEEeccccccCCeEEEEECCcccCCCCCChhhhhhhcCCCccccCccccCCCCCccccCCeEEEcCCCCEEEEEEECC
Confidence 0 000 000000136788988764210000 00110 12346778899999999997
Q ss_pred CCCCeeeEEEeCCcEEEEEe-cCCc----------cceeeecEEEEcCCceEEEEEEeCCCCCcceEEEEeee
Q 010700 232 GISTSLNFRIQNHNLLLAET-EGSY----------TVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASAR 293 (503)
Q Consensus 232 g~~~~~~~~i~gh~~~via~-DG~~----------~~p~~~d~v~l~pGeR~dvlv~~~~~~g~~y~i~~~~~ 293 (503)
+.. .|+||+|||.|+|++. +|.+ ..|...|++.+.++...-+-+++++| | .+-++++..
T Consensus 429 ~~~-~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNP-G-~Wl~HCHi~ 498 (539)
T PLN02835 429 EKT-MQSWHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPKSWTTILVSLDNQ-G-MWNMRSAIW 498 (539)
T ss_pred CCC-CCCCCCCCccEEEEeccCCCCCcccccccCCCCCCccceEEeCCCCEEEEEEECcCC-E-Eeeeeecch
Confidence 654 8999999999999987 5522 23888999999999999999999965 6 455677664
No 27
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=99.17 E-value=4.2e-09 Score=112.58 Aligned_cols=246 Identities=11% Similarity=0.084 Sum_probs=144.7
Q ss_pred EEEEEcCCCC---------CceEEEecCCEEEEEEEeCCC-CCeeEEEccCCCCCCCCCCCCCC-----CCCCCCCCCce
Q 010700 47 QVIAINGKFP---------GPTINVTTNNNVVVNVRNKLD-ESLLIHWSGIQQRRSSWQDGLLG-----TNCPIPPKWNW 111 (503)
Q Consensus 47 ~~~~~Ng~~p---------gP~i~~~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DG~~~-----~q~~i~PG~~~ 111 (503)
..+++||+.. -++|++++|+++++||.|... ....+|.+|..+.. .+.||.+. ....|.|||++
T Consensus 167 d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~V-Ia~DG~~~~P~~~~~l~i~~GqRy 245 (539)
T TIGR03389 167 DAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTV-VEVDATYTKPFKTKTIVIGPGQTT 245 (539)
T ss_pred ceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEE-EEeCCcccCceEeCeEEecCCCEE
Confidence 5689999841 148999999999999999964 55788999987654 67999863 23559999999
Q ss_pred EEEEEeCCCceeeEEccCch--hh--hh-cCceeeEEEEeCCCCCCCC----CCCCCc---------eE-EEEee--eee
Q 010700 112 TYQFQVKDQVGSFFYFPSLH--FQ--RA-SGGFGGFIINNRAIIPIPF----DTPDGD---------IT-ILIGD--WYT 170 (503)
Q Consensus 112 ~y~f~~~~~~Gt~wyH~H~~--~q--~~-~Gl~G~liV~~~~~~~~~~----~~~d~e---------~~-l~l~d--~~~ 170 (503)
+..+++.+.+|.||.+.+.. .+ .. ....+.|...+......+. +..+.. +. +.... ...
T Consensus 246 dVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 325 (539)
T TIGR03389 246 NVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLRSLNSAQYPANV 325 (539)
T ss_pred EEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhcccccccCCCCCC
Confidence 99999954489999998742 11 11 1122333332221111110 000000 00 00000 000
Q ss_pred -C-CHH----HHHHHhhcCC-----C-CCCCCeEEECCcCCCCCCC--------------------C-C---C--CC---
Q 010700 171 -R-NHT----ALRKTLDAGK-----G-LGMPDGVLINGKGPYQYNT--------------------T-L---V--PD--- 209 (503)
Q Consensus 171 -~-~~~----~~~~~~~~~~-----~-~~~~~~~liNG~~~~~~~~--------------------~-~---~--~~--- 209 (503)
. .+. .+........ . ....-.|.|||..+..-.. . . . ..
T Consensus 326 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 405 (539)
T TIGR03389 326 PVTIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPTKFNYTGTNLP 405 (539)
T ss_pred CCCCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCCccCCCccccCCCCCcc
Confidence 0 000 0000000000 0 0011246788876421000 0 0 0 00
Q ss_pred -C----CCceeEEEeCCcEEEEEEeEeCC--CCeeeEEEeCCcEEEEEec-CCc-----------cceeeecEEEEcCCc
Q 010700 210 -G----IDYETIEVHPGKTYRIRVHNVGI--STSLNFRIQNHNLLLAETE-GSY-----------TVQQNYTSLDIHVGQ 270 (503)
Q Consensus 210 -~----~~~~~~~v~~G~~~rlRliN~g~--~~~~~~~i~gh~~~via~D-G~~-----------~~p~~~d~v~l~pGe 270 (503)
+ .....+.++.|+++.|.|.|.+. ...|+||+|||.|+|++.. |.+ ..|...|++.+.++.
T Consensus 406 ~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~~g 485 (539)
T TIGR03389 406 NNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVGVPTGG 485 (539)
T ss_pred cccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEEcCCCc
Confidence 0 01245789999999999999753 3379999999999999886 321 237778999999999
Q ss_pred eEEEEEEeCCCCCcceEEEEeeecc
Q 010700 271 SYSFLVTMDQNASTDYYIVASARFV 295 (503)
Q Consensus 271 R~dvlv~~~~~~g~~y~i~~~~~~~ 295 (503)
.+-+-+++++| | -+.++++...-
T Consensus 486 ~vvirf~adNP-G-~W~~HCHi~~H 508 (539)
T TIGR03389 486 WAAIRFVADNP-G-VWFMHCHLEVH 508 (539)
T ss_pred eEEEEEecCCC-e-EEEEEecccch
Confidence 99999999965 6 44467776543
No 28
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.06 E-value=4.5e-09 Score=110.37 Aligned_cols=232 Identities=14% Similarity=0.064 Sum_probs=147.0
Q ss_pred CceeEEEEEcCCCCCceEEEecCCEEEEEEEeCC-CCCeeEEEccCCCCCCCCCCCCCC-----CCCCCCCCCceEEEEE
Q 010700 43 GVPQQVIAINGKFPGPTINVTTNNNVVVNVRNKL-DESLLIHWSGIQQRRSSWQDGLLG-----TNCPIPPKWNWTYQFQ 116 (503)
Q Consensus 43 G~~~~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l-~~~~siH~HG~~~~~~~~~DG~~~-----~q~~i~PG~~~~y~f~ 116 (503)
|..+....+||+. .| +.+.++..+++|+.|.. .....+++.|.++.. ...||.+. .+..+.|||+++...+
T Consensus 186 ~~~g~~~~vnG~~-~p-~~~~~~g~~rlRl~n~~~~~~~~~~~~~~~~~V-i~~DG~~v~~~~~d~~~l~p~er~~v~v~ 262 (451)
T COG2132 186 GFPGDTLLVNGAI-LP-FKAVPGGVVRLRLLNAGNARTYHLALGGGPLTV-IAVDGGPLPPVSVDELYLAPGERYEVLVD 262 (451)
T ss_pred CCCCCeEEECCCc-cc-eeecCCCeEEEEEEecCCceEEEEEecCceEEE-EEeCCcCcCceeeeeEEecCcceEEEEEE
Confidence 4566777888854 24 45556666999999997 677788888766554 56888762 4567999999999999
Q ss_pred eCCCceeeEEccCchhhhhcCceeeEEEEeCCCCCCCCCCCCCceEEEEeee-eeCCHHHHHHHh-hcCC---------C
Q 010700 117 VKDQVGSFFYFPSLHFQRASGGFGGFIINNRAIIPIPFDTPDGDITILIGDW-YTRNHTALRKTL-DAGK---------G 185 (503)
Q Consensus 117 ~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~-~~~~~~~~~~~~-~~~~---------~ 185 (503)
.. ..|++-+.|.. .+..+-+.+..-...... .++...+........|- ............ +.+. .
T Consensus 263 ~~-~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 338 (451)
T COG2132 263 MN-DGGAVTLTALG-EDMPDTLKGFRAPNPILT--PSYPVLNGRVGAPTGDMADHAPVGLLVTILVEPGPNRDTDFHLIG 338 (451)
T ss_pred cC-CCCeEEEEecc-ccCCceeeeeeccccccc--cccccccccccCCCcchhhccccccchhhcCCCcccccccchhhc
Confidence 85 47888888876 222222222222111110 00111111111111110 000000000000 0000 0
Q ss_pred CCCCCeEEECCcCCCCCCCCCCCCCCCceeEEEeCCcEEEEEEeEeCCCCeeeEEEeCCcEEEEEecCCcc--ceeeecE
Q 010700 186 LGMPDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYT--VQQNYTS 263 (503)
Q Consensus 186 ~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~via~DG~~~--~p~~~d~ 263 (503)
......+.+||+.+.. ....+.++.|+++||+|.|-+. -.|+||+||+.|.|++.|.... .+...|+
T Consensus 339 ~~~~~~~~~n~~~~~~----------~~~~~~~~~G~~~~~~i~n~~~-~~HP~HlHg~~F~v~~~~~~~~~~~~~~kDT 407 (451)
T COG2132 339 GIGGYVWAINGKAFDD----------NRVTLIAKAGTRERWVLTNDTP-MPHPFHLHGHFFQVLSGDAPAPGAAPGWKDT 407 (451)
T ss_pred ccccccccccCccCCC----------CcCceeecCCCEEEEEEECCCC-CccCeEEcCceEEEEecCCCcccccCccceE
Confidence 0113568899988721 2477899999999999999998 4999999999999999982221 2567899
Q ss_pred EEEcCCceEEEEEEeCCCCCcceEEEEeeec
Q 010700 264 LDIHVGQSYSFLVTMDQNASTDYYIVASARF 294 (503)
Q Consensus 264 v~l~pGeR~dvlv~~~~~~g~~y~i~~~~~~ 294 (503)
+.+.|++++.+.++++. +| .|.+.++...
T Consensus 408 v~v~~~~~~~v~~~a~~-~g-~~~~HCH~l~ 436 (451)
T COG2132 408 VLVAPGERLLVRFDADY-PG-PWMFHCHILE 436 (451)
T ss_pred EEeCCCeEEEEEEeCCC-CC-ceEEeccchh
Confidence 99999999999999995 45 7888887653
No 29
>PLN02354 copper ion binding / oxidoreductase
Probab=98.99 E-value=8e-08 Score=102.38 Aligned_cols=242 Identities=12% Similarity=0.076 Sum_probs=144.0
Q ss_pred EEEEEcCCCC------CceEEEecCCEEEEEEEeCCC-CCeeEEEccCCCCCCCCCCCCCC-----CCCCCCCCCceEEE
Q 010700 47 QVIAINGKFP------GPTINVTTNNNVVVNVRNKLD-ESLLIHWSGIQQRRSSWQDGLLG-----TNCPIPPKWNWTYQ 114 (503)
Q Consensus 47 ~~~~~Ng~~p------gP~i~~~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DG~~~-----~q~~i~PG~~~~y~ 114 (503)
..++|||+.. -|+|.+++|++.++||.|... ....+|..|..+.. .+.||++. ....|.||||++..
T Consensus 190 d~~liNG~~~~~~~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tV-Ia~DG~~v~p~~~~~l~i~~GqRydVl 268 (552)
T PLN02354 190 DGVLINGKSGKGDGKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKL-VEMEGSHVLQNDYDSLDVHVGQCFSVL 268 (552)
T ss_pred CeEEEeCCcCCCCCCCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEE-EEeCCcccCCcceeEEEEccCceEEEE
Confidence 4689999842 379999999999999999964 56789999987654 68999874 23459999999999
Q ss_pred EEeCCCceeeEEccCchhh-hhcCceeeEEEEeCCCCC---CCCCCCCC--------ceEEEEeeeeeCC---HH-H---
Q 010700 115 FQVKDQVGSFFYFPSLHFQ-RASGGFGGFIINNRAIIP---IPFDTPDG--------DITILIGDWYTRN---HT-A--- 175 (503)
Q Consensus 115 f~~~~~~Gt~wyH~H~~~q-~~~Gl~G~liV~~~~~~~---~~~~~~d~--------e~~l~l~d~~~~~---~~-~--- 175 (503)
+++.+.+|.||........ ......|.|......... .|....+. +...-+.-..... .. .
T Consensus 269 v~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~ 348 (552)
T PLN02354 269 VTANQAPKDYYMVASTRFLKKVLTTTGIIRYEGGKGPASPELPEAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYHYGK 348 (552)
T ss_pred EECCCCCCcEEEEEeccccCCCccEEEEEEECCCCCCCCCCCCCCCcccccchhhhhhhhhcccccccCCCCCCcccccc
Confidence 9996558999998774211 111123333333221100 11100000 0000000000000 00 0
Q ss_pred --HHHH--hhcC-CCCCCCCeEEECCcCCCCCCCC-C-------C-CC-----------------CCCceeEEEeCCcEE
Q 010700 176 --LRKT--LDAG-KGLGMPDGVLINGKGPYQYNTT-L-------V-PD-----------------GIDYETIEVHPGKTY 224 (503)
Q Consensus 176 --~~~~--~~~~-~~~~~~~~~liNG~~~~~~~~~-~-------~-~~-----------------~~~~~~~~v~~G~~~ 224 (503)
+... +... ........+.|||..+..-... + . +. ......+.++.|+.+
T Consensus 349 ~~~~~~~~~~~~~~~~~g~~~~~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~~~~~~~~~v~~~~~~~~V 428 (552)
T PLN02354 349 INITRTIKLVNSASKVDGKLRYALNGVSHVDPETPLKLAEYFGVADKVFKYDTIKDNPPAKITKIKIQPNVLNITFRTFV 428 (552)
T ss_pred ccccceEEEecccccCCceEEEEECCccCCCCCCChHHhhhhcccCCccccCccccCCccccCccccCCeeEEcCCCCEE
Confidence 0000 0000 0000013577888875321000 0 0 00 011235678889999
Q ss_pred EEEEeEeCCCCeeeEEEeCCcEEEEEec-C----------CccceeeecEEEEcCCceEEEEEEeCCCCCcceEEEEee
Q 010700 225 RIRVHNVGISTSLNFRIQNHNLLLAETE-G----------SYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASA 292 (503)
Q Consensus 225 rlRliN~g~~~~~~~~i~gh~~~via~D-G----------~~~~p~~~d~v~l~pGeR~dvlv~~~~~~g~~y~i~~~~ 292 (503)
.+-|.|.... .|+||+|||.|+|++.- | +...|...|++.+.++.-.-+-+++++| | -+.|+++.
T Consensus 429 eiVi~n~~~~-~HP~HLHGh~F~Vlg~G~G~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNP-G-vW~~HCHi 504 (552)
T PLN02354 429 EIIFENHEKS-MQSWHLDGYSFFAVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKSWAAILLTFDNA-G-MWNIRSEN 504 (552)
T ss_pred EEEEeCCCCC-CCCCcCCCccEEEEeecCCCCCccccccCCcCCCCccceEEeCCCCeEEEEEEecCC-e-EEeeeccc
Confidence 9999987544 89999999999999653 2 1235888999999999999999999965 6 45466766
No 30
>PLN02168 copper ion binding / pectinesterase
Probab=98.97 E-value=1.1e-07 Score=101.01 Aligned_cols=240 Identities=14% Similarity=0.156 Sum_probs=143.3
Q ss_pred EEEEEcCCCC-CceEEEecCCEEEEEEEeCCC-CCeeEEEccCCCCCCCCCCCCCC-----CCCCCCCCCceEEEEEeCC
Q 010700 47 QVIAINGKFP-GPTINVTTNNNVVVNVRNKLD-ESLLIHWSGIQQRRSSWQDGLLG-----TNCPIPPKWNWTYQFQVKD 119 (503)
Q Consensus 47 ~~~~~Ng~~p-gP~i~~~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DG~~~-----~q~~i~PG~~~~y~f~~~~ 119 (503)
..+++||+.+ .|+|.+++|+++++|+.|... ....+++.|..+.. .+.||.+. .+..|.||||++..+++.+
T Consensus 189 d~~liNG~~~~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tV-Ia~DG~~v~p~~~~~l~i~~GqRydvlv~a~~ 267 (545)
T PLN02168 189 DGILFNGRGPEETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLL-VETEGTYVQKRVYSSLDIHVGQSYSVLVTAKT 267 (545)
T ss_pred CEEEEeccCCCcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEE-EEECCeECCCceeeEEEEcCCceEEEEEEcCC
Confidence 5689999852 579999999999999999965 45788888877655 67999764 2455999999999999953
Q ss_pred Cc-e---eeEEccCch--hhhhcCceeeEEEEeCCCC----CCCC-CCC-CC----ceEEEEe-eee---eCCHH-----
Q 010700 120 QV-G---SFFYFPSLH--FQRASGGFGGFIINNRAII----PIPF-DTP-DG----DITILIG-DWY---TRNHT----- 174 (503)
Q Consensus 120 ~~-G---t~wyH~H~~--~q~~~Gl~G~liV~~~~~~----~~~~-~~~-d~----e~~l~l~-d~~---~~~~~----- 174 (503)
++ | .||.+.-.. .+...+ . +++..+.+.. +.+. +.. +. +....+. ... .....
T Consensus 268 ~~~g~~~~Y~i~a~~~~~~~~~~~-~-ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~ 345 (545)
T PLN02168 268 DPVGIYRSYYIVATARFTDAYLGG-V-ALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALSIRMDLNVGAARSNPQGSYH 345 (545)
T ss_pred CCCCCcceEEEEEEecccCCCcce-E-EEEEECCCCCCCCCCCCCCCcccccccccchhhhhhhcCCCCCCCCCCccccc
Confidence 43 4 799886532 122122 2 3444432211 1110 000 00 1000000 000 00000
Q ss_pred ----HHHHHhhcCCC---CCCCCeEEECCcCCCCCCCC-C-----------C----CCC-------CCceeEEEeCCcEE
Q 010700 175 ----ALRKTLDAGKG---LGMPDGVLINGKGPYQYNTT-L-----------V----PDG-------IDYETIEVHPGKTY 224 (503)
Q Consensus 175 ----~~~~~~~~~~~---~~~~~~~liNG~~~~~~~~~-~-----------~----~~~-------~~~~~~~v~~G~~~ 224 (503)
.+......... ......+.+||..+..-... + . +.. .....+.++.|+.|
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~V 425 (545)
T PLN02168 346 YGRINVTRTIILHNDVMLSSGKLRYTINGVSFVYPGTPLKLVDHFQLNDTIIPGMFPVYPSNKTPTLGTSVVDIHYKDFY 425 (545)
T ss_pred ccccccceeEEecccccccCceEEEEECCCccCCCCCchhhhhhcccccccccCCCccCCCcCccccCceEEEecCCCEE
Confidence 00000000000 00013578898886321000 0 0 000 01234678889999
Q ss_pred EEEEeEeCCCCeeeEEEeCCcEEEEEe-----cC------CccceeeecEEEEcCCceEEEEEEeCCCCCcceEEEEee
Q 010700 225 RIRVHNVGISTSLNFRIQNHNLLLAET-----EG------SYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASA 292 (503)
Q Consensus 225 rlRliN~g~~~~~~~~i~gh~~~via~-----DG------~~~~p~~~d~v~l~pGeR~dvlv~~~~~~g~~y~i~~~~ 292 (503)
-+=|-|... ..|+||+|||.|+|++. |+ ++..|...|++.+.++.-+-+-+++++| | -+-++++.
T Consensus 426 eiViqn~~~-~~HP~HLHGh~F~Vvg~g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNP-G-~Wl~HCHi 501 (545)
T PLN02168 426 HIVFQNPLF-SLESYHIDGYNFFVVGYGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQ-G-MWNVRSQK 501 (545)
T ss_pred EEEEeCCCC-CCCCeeeCCCceEEEECCCCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEccCC-e-EEeeeecC
Confidence 888888654 48999999999999966 21 2245888999999999999999999965 5 45567765
No 31
>PLN02792 oxidoreductase
Probab=98.96 E-value=2e-07 Score=98.98 Aligned_cols=242 Identities=14% Similarity=0.081 Sum_probs=143.7
Q ss_pred eEEEEEcCCCC--CceEEEecCCEEEEEEEeCCC-CCeeEEEccCCCCCCCCCCCCCC-----CCCCCCCCCceEEEEEe
Q 010700 46 QQVIAINGKFP--GPTINVTTNNNVVVNVRNKLD-ESLLIHWSGIQQRRSSWQDGLLG-----TNCPIPPKWNWTYQFQV 117 (503)
Q Consensus 46 ~~~~~~Ng~~p--gP~i~~~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DG~~~-----~q~~i~PG~~~~y~f~~ 117 (503)
...+++||+-. .++|.+++|+++++|+.|... ....+++.|..+.. .+.||.+. ....|.||||++..+++
T Consensus 179 ~d~~liNG~~~~~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tV-I~~DG~~v~p~~~~~l~i~~GqRydVlV~a 257 (536)
T PLN02792 179 PDGVMINGQGVSYVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKL-IEVEGTHTVQSMYTSLDIHVGQTYSVLVTM 257 (536)
T ss_pred CCEEEEeccCCCCcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEE-EEeCCccCCCcceeEEEEccCceEEEEEEc
Confidence 46789999832 478999999999999999965 56788998887654 67999763 23559999999999999
Q ss_pred CCCceeeEEccCchh--hhhcCceeeEEEEeCCCCCC---C-CC-CCCCceEE---EEeeeeeCC-----HH--------
Q 010700 118 KDQVGSFFYFPSLHF--QRASGGFGGFIINNRAIIPI---P-FD-TPDGDITI---LIGDWYTRN-----HT-------- 174 (503)
Q Consensus 118 ~~~~Gt~wyH~H~~~--q~~~Gl~G~liV~~~~~~~~---~-~~-~~d~e~~l---~l~d~~~~~-----~~-------- 174 (503)
.+.+|.||....... ....+ . +++-...+.... + .+ ..+.+... ...++.... ..
T Consensus 258 ~~~~g~Y~i~a~~~~~~~~~~~-~-ail~Y~g~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~ 335 (536)
T PLN02792 258 DQPPQNYSIVVSTRFIAAKVLV-S-STLHYSNSKGHKIIHARQPDPDDLEWSIKQAQSIRTNLTASGPRTNPQGSYHYGK 335 (536)
T ss_pred CCCCceEEEEEEeccCCCCCce-E-EEEEECCCCCCCCCCCCCCCcCCccccccchhhhhhccCCCCCCCCCCcccccce
Confidence 545799998865321 11111 1 333333221110 0 00 00111000 000000000 00
Q ss_pred -HHHHHh--hcC-CCCCCCCeEEECCcCCCCCCCC-C---------C------CC--------CCCceeEEEeCCcEEEE
Q 010700 175 -ALRKTL--DAG-KGLGMPDGVLINGKGPYQYNTT-L---------V------PD--------GIDYETIEVHPGKTYRI 226 (503)
Q Consensus 175 -~~~~~~--~~~-~~~~~~~~~liNG~~~~~~~~~-~---------~------~~--------~~~~~~~~v~~G~~~rl 226 (503)
.+...+ ... ......-.+.+||..+..-... + . +. .....++.++.|+.|-+
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~Vei 415 (536)
T PLN02792 336 MKISRTLILESSAALVKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIPDKPRRGGGMRLDTSVMGAHHNAFLEI 415 (536)
T ss_pred eccceeEEecccccccCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCccCCcccCCCccCceEEEcCCCCEEEE
Confidence 000000 000 0000012467888876421000 0 0 00 00134567888999999
Q ss_pred EEeEeCCCCeeeEEEeCCcEEEEEec-C----------CccceeeecEEEEcCCceEEEEEEeCCCCCcceEEEEeee
Q 010700 227 RVHNVGISTSLNFRIQNHNLLLAETE-G----------SYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASAR 293 (503)
Q Consensus 227 RliN~g~~~~~~~~i~gh~~~via~D-G----------~~~~p~~~d~v~l~pGeR~dvlv~~~~~~g~~y~i~~~~~ 293 (503)
-|-|.... .|+||+|||.|+||+.- | ++..|...|++.+.++.-.-+-+++++| | -+.++++..
T Consensus 416 Viqn~~~~-~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNP-G-vW~~HCh~~ 490 (536)
T PLN02792 416 IFQNREKI-VQSYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALDNV-G-MWNLRSQFW 490 (536)
T ss_pred EEECCCCC-CCCeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEeeCC-E-EEeeeEcch
Confidence 88886544 79999999999999742 2 2235888999999999999999999965 5 455666543
No 32
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.96 E-value=7.8e-10 Score=96.76 Aligned_cols=89 Identities=18% Similarity=0.281 Sum_probs=72.8
Q ss_pred CceEEEecCCEEEEEEEeCCCCCeeEEEccCCCCCCCCCCCC-------------CC--CCCCCCCCCceEEEEEeCCCc
Q 010700 57 GPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGL-------------LG--TNCPIPPKWNWTYQFQVKDQV 121 (503)
Q Consensus 57 gP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DG~-------------~~--~q~~i~PG~~~~y~f~~~~~~ 121 (503)
.+.+.++.|+.+++++.|....++.+|+||..+......++. +. ....|.||+..+.+|.+ +.+
T Consensus 33 ~~~~~~~~g~~v~~~l~N~~~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~-~~~ 111 (138)
T PF07731_consen 33 TPVIEVKNGDVVEIVLQNNGSMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRA-DNP 111 (138)
T ss_dssp TSEEEEETTSEEEEEEEECTTSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEE-TST
T ss_pred cceEEEeCCCEEEEEEECCCCCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEe-ecc
Confidence 579999999999999999999999999999876421111111 11 12448899999999999 689
Q ss_pred eeeEEccCchhhhhcCceeeEEEEe
Q 010700 122 GSFFYFPSLHFQRASGGFGGFIINN 146 (503)
Q Consensus 122 Gt~wyH~H~~~q~~~Gl~G~liV~~ 146 (503)
|.|.||||...+...||.+.+.|.+
T Consensus 112 G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 112 GPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEEEEEESSHHHHHTT-EEEEEECH
T ss_pred eEEEEEEchHHHHhCCCeEEEEEcC
Confidence 9999999999999999999999976
No 33
>PLN02991 oxidoreductase
Probab=98.94 E-value=2.7e-07 Score=97.90 Aligned_cols=242 Identities=12% Similarity=0.094 Sum_probs=143.0
Q ss_pred eEEEEEcCCCCCceEEEecCCEEEEEEEeCCC-CCeeEEEccCCCCCCCCCCCCCC-----CCCCCCCCCceEEEEEeCC
Q 010700 46 QQVIAINGKFPGPTINVTTNNNVVVNVRNKLD-ESLLIHWSGIQQRRSSWQDGLLG-----TNCPIPPKWNWTYQFQVKD 119 (503)
Q Consensus 46 ~~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DG~~~-----~q~~i~PG~~~~y~f~~~~ 119 (503)
...+++||+...+++.+++|+++++|+.|... ....+++.|..+.. .+.||.+. .+..|.||||++...++.+
T Consensus 190 ~d~~liNG~~~~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tV-Ia~DG~~~~p~~~~~l~i~~GQRydvlv~a~~ 268 (543)
T PLN02991 190 PDGILINGRGSGATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKL-VEVEGTHTIQTPFSSLDVHVGQSYSVLITADQ 268 (543)
T ss_pred CCEEEEccCCCCceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEE-EEeCCccccceeeeEEEEcCCcEEEEEEECCC
Confidence 46789999965689999999999999999965 45788888887654 67999763 2455999999999999965
Q ss_pred CceeeEEccCch--hhhhcCceeeEEEEeCCC-C--CCCCCCCCCceEEE---EeeeeeC-----C--HH-------HHH
Q 010700 120 QVGSFFYFPSLH--FQRASGGFGGFIINNRAI-I--PIPFDTPDGDITIL---IGDWYTR-----N--HT-------ALR 177 (503)
Q Consensus 120 ~~Gt~wyH~H~~--~q~~~Gl~G~liV~~~~~-~--~~~~~~~d~e~~l~---l~d~~~~-----~--~~-------~~~ 177 (503)
..|.||.-.... .+... -.+.|-.+.... . +.|....+.+...- ..++... . .. .+.
T Consensus 269 ~~~~y~i~~~~~~~~~~~~-~~AIl~Y~g~~~~~~~~~p~~p~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~ 347 (543)
T PLN02991 269 PAKDYYIVVSSRFTSKILI-TTGVLHYSNSAGPVSGPIPDGPIQLSWSFDQARAIKTNLTASGPRPNPQGSYHYGKINIT 347 (543)
T ss_pred CCCcEEEEEeeccCCCCcc-eEEEEEeCCCCCCCCCCCCCCCccccccccchhhhhhcccCCCCCCCCCccccccccccc
Confidence 578899764421 11111 123333322211 0 11100000000000 0000000 0 00 000
Q ss_pred HHh--hcC-CCCCCCCeEEECCcCCCCCCCCC-------------------CCC----CCCceeEEEeCCcEEEEEEeEe
Q 010700 178 KTL--DAG-KGLGMPDGVLINGKGPYQYNTTL-------------------VPD----GIDYETIEVHPGKTYRIRVHNV 231 (503)
Q Consensus 178 ~~~--~~~-~~~~~~~~~liNG~~~~~~~~~~-------------------~~~----~~~~~~~~v~~G~~~rlRliN~ 231 (503)
... ... ........+.|||..+..-.... .+. ....-.+.++.|+.+.+=|-|.
T Consensus 348 ~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~p~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~VeiViqn~ 427 (543)
T PLN02991 348 RTIRLANSAGNIEGKQRYAVNSASFYPADTPLKLADYFKIAGVYNPGSIPDQPTNGAIFPVTSVMQTDYKAFVEIVFENW 427 (543)
T ss_pred eeEEEeecccccCceEEEEECCCccCCCCCChhhhhhhcccCccccccccccCCCCccccCCcEEEcCCCCEEEEEEeCC
Confidence 000 000 00000125778888764210000 000 0112345678888888888886
Q ss_pred CCCCeeeEEEeCCcEEEEEec-C----------CccceeeecEEEEcCCceEEEEEEeCCCCCcceEEEEee
Q 010700 232 GISTSLNFRIQNHNLLLAETE-G----------SYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASA 292 (503)
Q Consensus 232 g~~~~~~~~i~gh~~~via~D-G----------~~~~p~~~d~v~l~pGeR~dvlv~~~~~~g~~y~i~~~~ 292 (503)
... .|+||+|||.|+|++.. | ++..|...|++.+.++.-.-+-+++++| | -+.++++.
T Consensus 428 ~~~-~HP~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNP-G-~W~~HCHi 496 (543)
T PLN02991 428 EDI-VQTWHLDGYSFYVVGMELGKWSAASRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDNV-G-MWNLRSEL 496 (543)
T ss_pred CCC-CCCeeeCCcceEEEEeCCCCCCcccccccCCCCCCcccEEEECCCCEEEEEEECCCC-E-EeeeeeCc
Confidence 554 89999999999999753 1 1235788999999999999999999965 6 45567776
No 34
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=98.90 E-value=2.6e-08 Score=106.52 Aligned_cols=233 Identities=9% Similarity=0.021 Sum_probs=133.9
Q ss_pred eEEEecCCEEEEEEEeCC-CCCeeEEEccCCCCCCCCCCCCCC-----CCCCCCCCCceEEEEEeCCCc-eeeEEccCch
Q 010700 59 TINVTTNNNVVVNVRNKL-DESLLIHWSGIQQRRSSWQDGLLG-----TNCPIPPKWNWTYQFQVKDQV-GSFFYFPSLH 131 (503)
Q Consensus 59 ~i~~~~Gd~v~v~v~N~l-~~~~siH~HG~~~~~~~~~DG~~~-----~q~~i~PG~~~~y~f~~~~~~-Gt~wyH~H~~ 131 (503)
.|.+++|+++++||.|.. .....+++.|..+.. .+.||.+. ....|.||||++..+++.+.+ |.||.+.-..
T Consensus 204 ~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~V-Ia~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~ 282 (541)
T TIGR03388 204 ILHVEPGKTYRLRIASTTALAALNFAIEGHKLTV-VEADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVR 282 (541)
T ss_pred EEEECCCCEEEEEEEcccccceEEEEECCCEEEE-EEeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecc
Confidence 589999999999999986 467788888877654 67999764 234599999999999984334 5899986533
Q ss_pred hhhh-cCceeeEEEEeCCCC-C-----CCC-CCCCC-----ceEEE-EeeeeeC-CHH--HHHHHh-hcCCCCCCCCeEE
Q 010700 132 FQRA-SGGFGGFIINNRAII-P-----IPF-DTPDG-----DITIL-IGDWYTR-NHT--ALRKTL-DAGKGLGMPDGVL 193 (503)
Q Consensus 132 ~q~~-~Gl~G~liV~~~~~~-~-----~~~-~~~d~-----e~~l~-l~d~~~~-~~~--~~~~~~-~~~~~~~~~~~~l 193 (503)
.+.. .....+++....... . .+. +..+. +..+. +...... ... ...... ...........|.
T Consensus 283 ~~~~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (541)
T TIGR03388 283 GRKPNTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDDFDRSKAFSLAIKAAMGSPKPPETSDRRIVLLNTQNKINGYTKWA 362 (541)
T ss_pred cCCCCCccEEEEEEECCCCCCCCCCCCCCCCCCccccchhhccchhhhccccCCCCCCCCCcEEEEeccCcccCceEEEE
Confidence 2211 111123444332111 0 000 00000 00000 0000000 000 000000 0000001123477
Q ss_pred ECCcCCCCCCCC-----------------C------------CCCC----CCceeEEEeCCcEEEEEEeEeCC-----CC
Q 010700 194 INGKGPYQYNTT-----------------L------------VPDG----IDYETIEVHPGKTYRIRVHNVGI-----ST 235 (503)
Q Consensus 194 iNG~~~~~~~~~-----------------~------------~~~~----~~~~~~~v~~G~~~rlRliN~g~-----~~ 235 (503)
+||..+..-... . .... ...-++.++.|++|.|.|.|... ..
T Consensus 363 ~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~ 442 (541)
T TIGR03388 363 INNVSLTLPHTPYLGSLKYNLLNAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSE 442 (541)
T ss_pred ECcccCCCCCccHHHHHhhcCCccccCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCCCCC
Confidence 888775310000 0 0000 01235788999999999999653 34
Q ss_pred eeeEEEeCCcEEEEEec-CCc-----------cceeeecEEEEcCCceEEEEEEeCCCCCcceEEEEeeec
Q 010700 236 SLNFRIQNHNLLLAETE-GSY-----------TVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASARF 294 (503)
Q Consensus 236 ~~~~~i~gh~~~via~D-G~~-----------~~p~~~d~v~l~pGeR~dvlv~~~~~~g~~y~i~~~~~~ 294 (503)
.|+||+|||+|+|++.. |.+ ..|...|++.+.++.-+-+-+++++| | -+.++++...
T Consensus 443 ~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNP-G-~W~~HCHi~~ 511 (541)
T TIGR03388 443 THPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADNP-G-VWAFHCHIEP 511 (541)
T ss_pred CCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECCCC-e-Eeeeeccchh
Confidence 79999999999999886 332 13777899999999999999999965 6 3445666653
No 35
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=98.87 E-value=7.3e-08 Score=95.71 Aligned_cols=80 Identities=13% Similarity=0.193 Sum_probs=63.3
Q ss_pred CCeEEECCcCCCCCCCCCCCCCCCceeEEEeCCcEEEEEEeEeCCC-CeeeEEEeCCcEEEEEecCCccceeeecEEEEc
Q 010700 189 PDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGIS-TSLNFRIQNHNLLLAETEGSYTVQQNYTSLDIH 267 (503)
Q Consensus 189 ~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~-~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~ 267 (503)
.+.|++||+.. .|.+++++|+++++++.|.... ..|.+|+|++. +.||... ...|.
T Consensus 47 ~~~~~~nG~~p-------------GP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~----~~dg~~~------~~~I~ 103 (311)
T TIGR02376 47 YQAMTFDGSVP-------------GPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT----GALGGAA------LTQVN 103 (311)
T ss_pred EEEEEECCccc-------------CceEEEECCCEEEEEEEeCCCCCCceeeeecCCC----ccCCCCc------ceeEC
Confidence 35799999864 3899999999999999997532 47889999874 4576431 23489
Q ss_pred CCceEEEEEEeCCCCCcceEEEEeee
Q 010700 268 VGQSYSFLVTMDQNASTDYYIVASAR 293 (503)
Q Consensus 268 pGeR~dvlv~~~~~~g~~y~i~~~~~ 293 (503)
||+++.+.+.+++ +| .||.+++..
T Consensus 104 PG~t~ty~F~~~~-~G-ty~YH~H~~ 127 (311)
T TIGR02376 104 PGETATLRFKATR-PG-AFVYHCAPP 127 (311)
T ss_pred CCCeEEEEEEcCC-CE-EEEEEcCCC
Confidence 9999999999874 67 999999853
No 36
>PLN02604 oxidoreductase
Probab=98.84 E-value=1.1e-07 Score=102.19 Aligned_cols=232 Identities=11% Similarity=0.065 Sum_probs=135.4
Q ss_pred ceEEEecCCEEEEEEEeCCC-CCeeEEEccCCCCCCCCCCCCCC-----CCCCCCCCCceEEEEEeCCCce-eeEEccCc
Q 010700 58 PTINVTTNNNVVVNVRNKLD-ESLLIHWSGIQQRRSSWQDGLLG-----TNCPIPPKWNWTYQFQVKDQVG-SFFYFPSL 130 (503)
Q Consensus 58 P~i~~~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DG~~~-----~q~~i~PG~~~~y~f~~~~~~G-t~wyH~H~ 130 (503)
++|.+++|+++++|+.|... ....+++.|..+.. .+.||.+. ....|.||||++..+++.+.+| .||.+...
T Consensus 224 ~~~~v~~g~~~RlRlINa~~~~~~~~sidgH~~~V-Ia~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~ 302 (566)
T PLN02604 224 YVLTVVPGKTYRLRISSLTALSALSFQIEGHNMTV-VEADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSV 302 (566)
T ss_pred eEEEecCCCEEEEEEEeccccceEEEEECCCEEEE-EEeCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEec
Confidence 48999999999999999965 56778888876654 67999774 2345899999999999854445 79998543
Q ss_pred hh---hhhcCceeeEEEEeCCC--CCCCCCCCC----CceEEEEeeee---------eCCHHHHH---HHhhcCCCCCCC
Q 010700 131 HF---QRASGGFGGFIINNRAI--IPIPFDTPD----GDITILIGDWY---------TRNHTALR---KTLDAGKGLGMP 189 (503)
Q Consensus 131 ~~---q~~~Gl~G~liV~~~~~--~~~~~~~~d----~e~~l~l~d~~---------~~~~~~~~---~~~~~~~~~~~~ 189 (503)
.. |...| . +++...... ...+..... .+....+.... ........ ............
T Consensus 303 ~~~~~~~~~~-~-aIL~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 380 (566)
T PLN02604 303 VSRNNTTPPG-L-AIFNYYPNHPRRSPPTVPPSGPLWNDVEPRLNQSLAIKARHGYIHPPPLTSDRVIVLLNTQNEVNGY 380 (566)
T ss_pred ccCCCCCcce-e-EEEEECCCCCCCCCCCCCCCCCcccccchhhcchhcccccccCcCCCCCCCCeEEEEeccccccCCe
Confidence 21 22222 2 333332211 111110000 00000000000 00000000 000000000012
Q ss_pred CeEEECCcCCCCCCC----------------CCCC------------------CCCCceeEEEeCCcEEEEEEeEeCC--
Q 010700 190 DGVLINGKGPYQYNT----------------TLVP------------------DGIDYETIEVHPGKTYRIRVHNVGI-- 233 (503)
Q Consensus 190 ~~~liNG~~~~~~~~----------------~~~~------------------~~~~~~~~~v~~G~~~rlRliN~g~-- 233 (503)
..|.|||..+..-.. ...+ ..+...++.++.|++|.+.|.|...
T Consensus 381 ~~w~in~~~~~~p~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~ 460 (566)
T PLN02604 381 RRWSVNNVSFNLPHTPYLIALKENLTGAFDQTPPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTMN 460 (566)
T ss_pred EEEEECcccCCCCCCchhHhhhhcCCCcccCCCCCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCcccc
Confidence 368888886532000 0000 0011234788999999999999752
Q ss_pred ---CCeeeEEEeCCcEEEEEec-CCc-----------cceeeecEEEEcCCceEEEEEEeCCCCCcceEEEEeeec
Q 010700 234 ---STSLNFRIQNHNLLLAETE-GSY-----------TVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASARF 294 (503)
Q Consensus 234 ---~~~~~~~i~gh~~~via~D-G~~-----------~~p~~~d~v~l~pGeR~dvlv~~~~~~g~~y~i~~~~~~ 294 (503)
...|+||+|||+|+|++.. |.+ ..|...|++.+.++.-+-+-+++++| | -+-++++...
T Consensus 461 ~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDNP-G-~WlfHCHI~~ 534 (566)
T PLN02604 461 ANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADNP-G-VWAFHCHIES 534 (566)
T ss_pred CCCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECCCC-e-EeeEeecchh
Confidence 3479999999999999886 432 13777899999999999999999964 6 4445676653
No 37
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=98.81 E-value=1.1e-07 Score=101.49 Aligned_cols=244 Identities=11% Similarity=0.081 Sum_probs=141.8
Q ss_pred EEEEEcCCC---------------CCceEEEecCCEEEEEEEeCCC-CCeeEEEccCC-CCCCCCCCCCCC-----CCCC
Q 010700 47 QVIAINGKF---------------PGPTINVTTNNNVVVNVRNKLD-ESLLIHWSGIQ-QRRSSWQDGLLG-----TNCP 104 (503)
Q Consensus 47 ~~~~~Ng~~---------------pgP~i~~~~Gd~v~v~v~N~l~-~~~siH~HG~~-~~~~~~~DG~~~-----~q~~ 104 (503)
..+++||+. ..|+|++++|+++++|+.|... ....+++.|.. +.. .+.||.+. ....
T Consensus 172 d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~V-Ia~DG~~~~P~~v~~l~ 250 (538)
T TIGR03390 172 EAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTI-IEADGSYTKPAKIDHLQ 250 (538)
T ss_pred ceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEE-EEeCCCCCCceEeCeEE
Confidence 467899983 1378999999999999999965 45688888876 544 67999863 2345
Q ss_pred CCCCCceEEEEEeCCC-------ceeeEEccCch--hhhhcCceeeEEEEeCCCCCCC---C-C--CCC------CceEE
Q 010700 105 IPPKWNWTYQFQVKDQ-------VGSFFYFPSLH--FQRASGGFGGFIINNRAIIPIP---F-D--TPD------GDITI 163 (503)
Q Consensus 105 i~PG~~~~y~f~~~~~-------~Gt~wyH~H~~--~q~~~Gl~G~liV~~~~~~~~~---~-~--~~d------~e~~l 163 (503)
|.||||++..+++.+. +|-||...-.. .+... ..+.|..+.......+ . . ... .|.-+
T Consensus 251 l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~~~~~-~~aiL~Y~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l 329 (538)
T TIGR03390 251 LGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRPKVYR-GYAVLRYRSDKASKLPSVPETPPLPLPNSTYDWLEYEL 329 (538)
T ss_pred EccCCEEEEEEECCCccccccCCCCcEEEEEeecCCCCcce-EEEEEEeCCCCCCCCCCCCCCCCCCccCcchhhhheee
Confidence 9999999999999432 38899875421 12211 2333333222111111 1 0 000 11101
Q ss_pred E-Eeeeee---CCHHHHHH--HhhcCCCC---CCCCeEEECCcCCCCC-CCC------CCC----------------CCC
Q 010700 164 L-IGDWYT---RNHTALRK--TLDAGKGL---GMPDGVLINGKGPYQY-NTT------LVP----------------DGI 211 (503)
Q Consensus 164 ~-l~d~~~---~~~~~~~~--~~~~~~~~---~~~~~~liNG~~~~~~-~~~------~~~----------------~~~ 211 (503)
. +..-.. ........ .+...... .....|++||..+... ... ... ...
T Consensus 330 ~pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (538)
T TIGR03390 330 EPLSEENNQDFPTLDEVTRRVVIDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENGLPATPNYTAALANYGFDP 409 (538)
T ss_pred EecCccccCCCCCCCcCceEEEEEccccccccCCeEEEEECCcccCCCCCCCchHHHHhcCCCCcCCCcccccccCCcCc
Confidence 1 100000 00000000 00001000 1124688999876421 110 000 000
Q ss_pred CceeEEEeCCcEEEEEEeEeC-------CCCeeeEEEeCCcEEEEEe-cCCc-----------cceeeecEEEEc-----
Q 010700 212 DYETIEVHPGKTYRIRVHNVG-------ISTSLNFRIQNHNLLLAET-EGSY-----------TVQQNYTSLDIH----- 267 (503)
Q Consensus 212 ~~~~~~v~~G~~~rlRliN~g-------~~~~~~~~i~gh~~~via~-DG~~-----------~~p~~~d~v~l~----- 267 (503)
..-.+.++.|+++.|.|.|.. ....|+||+|||+|+||+. +|.+ ..|...|++.+.
T Consensus 410 ~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~ 489 (538)
T TIGR03390 410 ETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAVK 489 (538)
T ss_pred CceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhccCCCCeecceeecccccc
Confidence 112567889999999999974 2458999999999999985 4532 247788999883
Q ss_pred -----CCceEEEEEEeCCCCCcceEEEEeeec
Q 010700 268 -----VGQSYSFLVTMDQNASTDYYIVASARF 294 (503)
Q Consensus 268 -----pGeR~dvlv~~~~~~g~~y~i~~~~~~ 294 (503)
++.-+-+.+++++| | .+.++++...
T Consensus 490 ~~~~~~~~~~~ir~~~dNP-G-~W~~HCHi~~ 519 (538)
T TIGR03390 490 VVPGAPAGWRAWRIRVTNP-G-VWMMHCHILQ 519 (538)
T ss_pred ccccCCCceEEEEEEcCCC-e-eEEEeccchh
Confidence 77788888889865 6 5666777653
No 38
>PRK02710 plastocyanin; Provisional
Probab=98.75 E-value=1.9e-07 Score=79.19 Aligned_cols=74 Identities=18% Similarity=0.344 Sum_probs=55.7
Q ss_pred CceEEEecCCEEEEEEEeCCCCCeeEEEccCCCCCCCCCCCCCCCCCCCCCCCceEEEEEeCCCceeeEEccCchhhhhc
Q 010700 57 GPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLGTNCPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRAS 136 (503)
Q Consensus 57 gP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DG~~~~q~~i~PG~~~~y~f~~~~~~Gt~wyH~H~~~q~~~ 136 (503)
-+.|++++||+| +++|....++++.+.|... ...+...+.||++++|.|+. +|+|-|+|- .+...
T Consensus 46 P~~i~v~~Gd~V--~~~N~~~~~H~v~~~~~~~--------~~~~~~~~~pg~t~~~tF~~---~G~y~y~C~--~H~~~ 110 (119)
T PRK02710 46 PSTLTIKAGDTV--KWVNNKLAPHNAVFDGAKE--------LSHKDLAFAPGESWEETFSE---AGTYTYYCE--PHRGA 110 (119)
T ss_pred CCEEEEcCCCEE--EEEECCCCCceEEecCCcc--------ccccccccCCCCEEEEEecC---CEEEEEEcC--CCccC
Confidence 378999999985 5678877788887765311 00122347899999999874 799999997 45568
Q ss_pred CceeeEEEE
Q 010700 137 GGFGGFIIN 145 (503)
Q Consensus 137 Gl~G~liV~ 145 (503)
||.|.|+|+
T Consensus 111 gM~G~I~V~ 119 (119)
T PRK02710 111 GMVGKITVE 119 (119)
T ss_pred CcEEEEEEC
Confidence 999999984
No 39
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=98.66 E-value=6.8e-08 Score=80.03 Aligned_cols=99 Identities=19% Similarity=0.198 Sum_probs=48.8
Q ss_pred HHHHHHhhhhcCCceEEEEEEEEEEEeCCCCceeEEEEEcCCCCCceEEEecCCEEEEEEEeCCCCCeeEEEccCCCCCC
Q 010700 13 HIALLASLCSAADLFVYFDFEVSYITASPLGVPQQVIAINGKFPGPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRS 92 (503)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~~dG~~~~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~ 92 (503)
.+++.+++.+..+.....++++++. +|-...|++++|+.|+|+++|.....+.+...++...
T Consensus 6 ~~~~~~~~~~~~~~~~~v~I~~~~~----------------~f~P~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~~~~-- 67 (104)
T PF13473_consen 6 AAALALSSSASAAAAQTVTITVTDF----------------GFSPSTITVKAGQPVTLTFTNNDSRPHEFVIPDLGIS-- 67 (104)
T ss_dssp ------------------------E----------------EEES-EEEEETTCEEEEEEEE-SSS-EEEEEGGGTEE--
T ss_pred cccccccccccccccccccccccCC----------------eEecCEEEEcCCCeEEEEEEECCCCcEEEEECCCceE--
Confidence 3344444444455555555555544 3323599999999999999999888877777775321
Q ss_pred CCCCCCCCCCCCCCCCCceEEEEEeCCCceeeEEccCchhhhhcCceeeEEE
Q 010700 93 SWQDGLLGTNCPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFII 144 (503)
Q Consensus 93 ~~~DG~~~~q~~i~PG~~~~y~f~~~~~~Gt~wyH~H~~~q~~~Gl~G~liV 144 (503)
..|.||++.++.|+. +++|+|=|+|..+. . |.|.|+|
T Consensus 68 ----------~~l~~g~~~~~~f~~-~~~G~y~~~C~~~~---~-m~G~liV 104 (104)
T PF13473_consen 68 ----------KVLPPGETATVTFTP-LKPGEYEFYCTMHP---N-MKGTLIV 104 (104)
T ss_dssp ----------EEE-TT-EEEEEEEE--S-EEEEEB-SSS----T-TB-----
T ss_pred ----------EEECCCCEEEEEEcC-CCCEEEEEEcCCCC---c-ceecccC
Confidence 458999999999987 68999999999665 2 7777775
No 40
>PLN02191 L-ascorbate oxidase
Probab=98.64 E-value=1.4e-06 Score=93.54 Aligned_cols=241 Identities=9% Similarity=0.014 Sum_probs=135.6
Q ss_pred EEcCCCCCceEEEecCCEEEEEEEeCCC-CCeeEEEccCCCCCCCCCCCCCC-----CCCCCCCCCceEEEEEeCCCc-e
Q 010700 50 AINGKFPGPTINVTTNNNVVVNVRNKLD-ESLLIHWSGIQQRRSSWQDGLLG-----TNCPIPPKWNWTYQFQVKDQV-G 122 (503)
Q Consensus 50 ~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DG~~~-----~q~~i~PG~~~~y~f~~~~~~-G 122 (503)
.+||+.-.++|.+++|++.++|+.|... ....+++.|..+.. .+.||.+. ....|.||||++..+++.+.+ +
T Consensus 218 ~~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tV-Ia~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~ 296 (574)
T PLN02191 218 KEGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQGHKLVV-VEADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQ 296 (574)
T ss_pred ccCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECCCeEEE-EEcCCeeccceEeeeEEEcCCCeEEEEEECCCCCCC
Confidence 3444432237999999999999999954 56778888877654 68999874 235599999999999995445 4
Q ss_pred eeEEccCchhhh---hcCceeeEEEEeCCCCCCCC------CCCCC-----ceEE-EEeeee-eCCHHHHHH---HhhcC
Q 010700 123 SFFYFPSLHFQR---ASGGFGGFIINNRAIIPIPF------DTPDG-----DITI-LIGDWY-TRNHTALRK---TLDAG 183 (503)
Q Consensus 123 t~wyH~H~~~q~---~~Gl~G~liV~~~~~~~~~~------~~~d~-----e~~l-~l~d~~-~~~~~~~~~---~~~~~ 183 (503)
.||.+.-...+. ..++ +.|-.........|. +..+. .... .+.... .+....... .+...
T Consensus 297 ~y~ira~~~~~~~~~~~~~-ail~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 375 (574)
T PLN02191 297 NYYISVGVRGRKPNTTQAL-TILNYVTAPASKLPSSPPPVTPRWDDFERSKNFSKKIFSAMGSPSPPKKYRKRLILLNTQ 375 (574)
T ss_pred CEEEEEEccccCCCCCCce-EEEEECCCCCCCCCCCCCCCCCcccccchhhcccccccccccCCCCCCcccceEEEeccc
Confidence 899875432211 1122 333332221110010 00000 0000 000000 000000000 00000
Q ss_pred CCCCCCCeEEECCcCCCCCCCC-----C----------C-----C-------------CCCCceeEEEeCCcEEEEEEeE
Q 010700 184 KGLGMPDGVLINGKGPYQYNTT-----L----------V-----P-------------DGIDYETIEVHPGKTYRIRVHN 230 (503)
Q Consensus 184 ~~~~~~~~~liNG~~~~~~~~~-----~----------~-----~-------------~~~~~~~~~v~~G~~~rlRliN 230 (503)
........+.+||..+..-... . . + .....-.+.++.|+.+.+=|.|
T Consensus 376 ~~~~~~~~~~~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n 455 (574)
T PLN02191 376 NLIDGYTKWAINNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNVTVDVIIQN 455 (574)
T ss_pred ceeCCeEEEEECcccCcCCCcchHHHHhhccCcccccCCCcccccccccccCCCccccccccceeEEecCCCEEEEEEEC
Confidence 0000112577888765311000 0 0 0 0011235677789999998888
Q ss_pred eC-----CCCeeeEEEeCCcEEEEEecC-C-----------ccceeeecEEEEcCCceEEEEEEeCCCCCcceEEEEeee
Q 010700 231 VG-----ISTSLNFRIQNHNLLLAETEG-S-----------YTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASAR 293 (503)
Q Consensus 231 ~g-----~~~~~~~~i~gh~~~via~DG-~-----------~~~p~~~d~v~l~pGeR~dvlv~~~~~~g~~y~i~~~~~ 293 (503)
.. ....|+||+|||+|+|++..- . +..|...|++.+.++.-.-+-+++++| | -+-++++..
T Consensus 456 ~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNP-G-~Wl~HCHi~ 533 (574)
T PLN02191 456 ANVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNP-G-VWFFHCHIE 533 (574)
T ss_pred CCcccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCCC-E-EEEEecCch
Confidence 65 245899999999999996542 2 124778999999999999999999865 6 444567665
Q ss_pred c
Q 010700 294 F 294 (503)
Q Consensus 294 ~ 294 (503)
.
T Consensus 534 ~ 534 (574)
T PLN02191 534 P 534 (574)
T ss_pred h
Confidence 4
No 41
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=98.42 E-value=6.4e-06 Score=88.18 Aligned_cols=84 Identities=15% Similarity=0.213 Sum_probs=66.8
Q ss_pred CeEEECCcCCCCCCCCCCCCCCCceeEEEeCCcEEEEEEeEeCCCCeeeEEEeCCcEEEE-EecCCccceeeecEEEEcC
Q 010700 190 DGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLA-ETEGSYTVQQNYTSLDIHV 268 (503)
Q Consensus 190 ~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~vi-a~DG~~~~p~~~d~v~l~p 268 (503)
..++|||+.. .|+|+++.|+++++++.|-... ...+|.||..+.-- ..||... ..-.|.|
T Consensus 49 ~vi~vNGq~P-------------GPtI~~~~GD~v~V~V~N~L~~-~ttIHWHGl~q~~t~w~DGv~~-----TQcPI~P 109 (596)
T PLN00044 49 EAIGINGQFP-------------GPALNVTTNWNLVVNVRNALDE-PLLLTWHGVQQRKSAWQDGVGG-----TNCAIPA 109 (596)
T ss_pred EEEEEcCcCC-------------CCcEEEECCCEEEEEEEeCCCC-CccEEECCccCCCCccccCCCC-----CcCCcCC
Confidence 4799999975 4999999999999999998754 66777777665433 5798642 3358999
Q ss_pred CceEEEEEEeCCCCCcceEEEEeee
Q 010700 269 GQSYSFLVTMDQNASTDYYIVASAR 293 (503)
Q Consensus 269 GeR~dvlv~~~~~~g~~y~i~~~~~ 293 (503)
|+++...+++++..| +||.+++..
T Consensus 110 G~sftY~F~~~dq~G-T~WYHsH~~ 133 (596)
T PLN00044 110 GWNWTYQFQVKDQVG-SFFYAPSTA 133 (596)
T ss_pred CCcEEEEEEeCCCCc-eeEeeccch
Confidence 999999999965578 999998764
No 42
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.37 E-value=1.7e-06 Score=70.88 Aligned_cols=82 Identities=12% Similarity=0.174 Sum_probs=57.0
Q ss_pred CceEEEecCCEEEEEEEeCCCCCeeEEEccCCCCC-CCCCCCCCC-CCCCCCCCCceEEEEEeCCCceeeEEccCchhhh
Q 010700 57 GPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRR-SSWQDGLLG-TNCPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQR 134 (503)
Q Consensus 57 gP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~-~~~~DG~~~-~q~~i~PG~~~~y~f~~~~~~Gt~wyH~H~~~q~ 134 (503)
...|++++||+| +++|....++++.++...... .....+... +...+.||+++++.|.. +|+|.|+|. .+.
T Consensus 16 P~~i~v~~G~~V--~~~N~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~~---~G~y~y~C~--~H~ 88 (99)
T TIGR02656 16 PAKISIAAGDTV--EWVNNKGGPHNVVFDEDAVPAGVKELAKSLSHKDLLNSPGESYEVTFST---PGTYTFYCE--PHR 88 (99)
T ss_pred CCEEEECCCCEE--EEEECCCCCceEEECCCCCccchhhhcccccccccccCCCCEEEEEeCC---CEEEEEEcC--Ccc
Confidence 468999999985 566887777887776432110 000001001 22347899999998874 899999998 677
Q ss_pred hcCceeeEEEE
Q 010700 135 ASGGFGGFIIN 145 (503)
Q Consensus 135 ~~Gl~G~liV~ 145 (503)
.+||.|.|+|+
T Consensus 89 ~aGM~G~I~V~ 99 (99)
T TIGR02656 89 GAGMVGKITVE 99 (99)
T ss_pred ccCCEEEEEEC
Confidence 78999999985
No 43
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.10 E-value=5e-06 Score=68.12 Aligned_cols=82 Identities=16% Similarity=0.227 Sum_probs=54.8
Q ss_pred CceEEEecCCEEEEEEEeCCCCCeeEEEccCCCCCCCCCC-CCCC-CCCCCCCCCceEEEEEeCCCceeeEEccCchhhh
Q 010700 57 GPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQD-GLLG-TNCPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQR 134 (503)
Q Consensus 57 gP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~D-G~~~-~q~~i~PG~~~~y~f~~~~~~Gt~wyH~H~~~q~ 134 (503)
-+.|++++||+| ++.|....++++.+=--........+ ..+. ....+.||+++++.|+ .+|+|.|+|- - +.
T Consensus 16 P~~i~V~~G~tV--~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~---~~G~y~y~C~-P-H~ 88 (99)
T PF00127_consen 16 PSEITVKAGDTV--TFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFT---KPGTYEYYCT-P-HY 88 (99)
T ss_dssp SSEEEEETTEEE--EEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE---SSEEEEEEET-T-TG
T ss_pred CCEEEECCCCEE--EEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeC---CCeEEEEEcC-C-Cc
Confidence 479999999985 57776666777665321000000000 0000 1234789999999998 5899999998 3 88
Q ss_pred hcCceeeEEEE
Q 010700 135 ASGGFGGFIIN 145 (503)
Q Consensus 135 ~~Gl~G~liV~ 145 (503)
.+||.|.|+|+
T Consensus 89 ~~GM~G~i~V~ 99 (99)
T PF00127_consen 89 EAGMVGTIIVE 99 (99)
T ss_dssp GTTSEEEEEEE
T ss_pred ccCCEEEEEEC
Confidence 88999999996
No 44
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.03 E-value=2e-05 Score=83.35 Aligned_cols=99 Identities=18% Similarity=0.228 Sum_probs=67.8
Q ss_pred eCCCCceeEE--EEEcCCCCCceEEEecCCEEEEEEEeCCCCCeeEEEccCCCCCCCCCCCCCCCCCCCCCCCceEEEEE
Q 010700 39 ASPLGVPQQV--IAINGKFPGPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLGTNCPIPPKWNWTYQFQ 116 (503)
Q Consensus 39 ~~~dG~~~~~--~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DG~~~~q~~i~PG~~~~y~f~ 116 (503)
+..||.+..+ ....-.|--..|+|++||+|+++|+|.-...-.+ ||+.... -|+ ..-+.||++.+..|+
T Consensus 534 v~R~G~kv~Vym~a~a~~f~p~~i~Vk~GDeVt~~lTN~d~~~DVi--HGF~Ip~----~nI---~~dv~PG~t~svtF~ 604 (635)
T PRK02888 534 VIRDGNKVRVYMTSQAPAFGLREFTVKQGDEVTVIVTNLDKVEDLT--HGFAIPN----YGV---NMEVAPQATASVTFT 604 (635)
T ss_pred eEEeCCEEEEEEEEEecccCCceEEecCCCEEEEEEEeCCcccccc--cceeecc----cCc---cEEEcCCceEEEEEE
Confidence 5567765544 4555566557899999999999999953211111 4543321 011 133789999999999
Q ss_pred eCCCceeeEEccCch-hhhhcCceeeEEEEeC
Q 010700 117 VKDQVGSFFYFPSLH-FQRASGGFGGFIINNR 147 (503)
Q Consensus 117 ~~~~~Gt~wyH~H~~-~q~~~Gl~G~liV~~~ 147 (503)
+ +++|+|||||..- .....+|.|.|+|+++
T Consensus 605 a-dkPGvy~~~CtefCGa~H~~M~G~~iVep~ 635 (635)
T PRK02888 605 A-DKPGVYWYYCTWFCHALHMEMRGRMLVEPK 635 (635)
T ss_pred c-CCCEEEEEECCcccccCcccceEEEEEEeC
Confidence 8 7899999999842 1122479999999874
No 45
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=98.01 E-value=1.3e-05 Score=71.82 Aligned_cols=83 Identities=19% Similarity=0.207 Sum_probs=65.9
Q ss_pred eEEEEEcCC------------CCCceEEEecCCEEEEEEEeCCC-CCeeEEEccCCCCCCCCCCCCCC-----CCCCCCC
Q 010700 46 QQVIAINGK------------FPGPTINVTTNNNVVVNVRNKLD-ESLLIHWSGIQQRRSSWQDGLLG-----TNCPIPP 107 (503)
Q Consensus 46 ~~~~~~Ng~------------~pgP~i~~~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DG~~~-----~q~~i~P 107 (503)
...+++||+ -.-|+|.+++|+++++||.|... ....+++.|..+.. .+.||.+. ....|.|
T Consensus 36 ~d~~liNG~~~~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~~~~~~~~~i~gh~~~V-ia~DG~~v~p~~~~~l~l~~ 114 (159)
T PF00394_consen 36 PDSILINGKGRFDCSSADYTGGEPPVIKVKPGERYRLRLINAGASTSFNFSIDGHPMTV-IAADGVPVEPYKVDTLVLAP 114 (159)
T ss_dssp CSEEEETTBTCBTTCTTGSTTSTSGEEEEETTTEEEEEEEEESSS-BEEEEETTBCEEE-EEETTEEEEEEEESBEEE-T
T ss_pred CcEEEECCccccccccccccccccceEEEcCCcEEEEEEEeccCCeeEEEEeeccceeE-eeeccccccccccceEEeeC
Confidence 456899994 12489999999999999999966 46789999986654 67899874 2455999
Q ss_pred CCceEEEEEeCCCceeeEEccC
Q 010700 108 KWNWTYQFQVKDQVGSFFYFPS 129 (503)
Q Consensus 108 G~~~~y~f~~~~~~Gt~wyH~H 129 (503)
||+++..+++.+.+|.||.++.
T Consensus 115 G~R~dvlv~~~~~~g~y~i~~~ 136 (159)
T PF00394_consen 115 GQRYDVLVTADQPPGNYWIRAS 136 (159)
T ss_dssp TEEEEEEEEECSCSSEEEEEEE
T ss_pred CeEEEEEEEeCCCCCeEEEEEe
Confidence 9999999999544999999993
No 46
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.92 E-value=5.2e-05 Score=59.89 Aligned_cols=74 Identities=14% Similarity=0.144 Sum_probs=52.0
Q ss_pred CceEEEecCCEEEEEEEeCCCCCeeEEEccCCCCCCCCCCCCCCCCCCCCCCCceEEEEEeCCCceeeEEccCchhhhhc
Q 010700 57 GPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLGTNCPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRAS 136 (503)
Q Consensus 57 gP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DG~~~~q~~i~PG~~~~y~f~~~~~~Gt~wyH~H~~~q~~~ 136 (503)
.+.|++++||+| ++.|+...++++++...... ..+ .....+.||+++++.|+ ++|+|-|||-.+.
T Consensus 10 P~~i~v~~GdtV--t~~N~d~~~Hnv~~~~g~~~---~~~---~~~~~~~~g~~~~~tf~---~~G~y~y~C~~Hp---- 74 (83)
T TIGR02657 10 TPELHVKVGDTV--TWINREAMPHNVHFVAGVLG---EAA---LKGPMMKKEQAYSLTFT---EAGTYDYHCTPHP---- 74 (83)
T ss_pred CCEEEECCCCEE--EEEECCCCCccEEecCCCCc---ccc---ccccccCCCCEEEEECC---CCEEEEEEcCCCC----
Confidence 478999999996 56888778888887653110 011 01123578888887764 5899999997654
Q ss_pred CceeeEEEE
Q 010700 137 GGFGGFIIN 145 (503)
Q Consensus 137 Gl~G~liV~ 145 (503)
+|.|.++|+
T Consensus 75 ~M~G~v~V~ 83 (83)
T TIGR02657 75 FMRGKVVVE 83 (83)
T ss_pred CCeEEEEEC
Confidence 499999985
No 47
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=97.80 E-value=0.00026 Score=63.93 Aligned_cols=102 Identities=19% Similarity=0.201 Sum_probs=74.1
Q ss_pred EEEEEcCCCCC-ceEEEecCCEEEEEEEeCCCCCeeEEE--ccCCC--CCCCCCCCCC----C------CCCCCCCCCce
Q 010700 47 QVIAINGKFPG-PTINVTTNNNVVVNVRNKLDESLLIHW--SGIQQ--RRSSWQDGLL----G------TNCPIPPKWNW 111 (503)
Q Consensus 47 ~~~~~Ng~~pg-P~i~~~~Gd~v~v~v~N~l~~~~siH~--HG~~~--~~~~~~DG~~----~------~q~~i~PG~~~ 111 (503)
+.+-|||..-| ++|.+..|-+|.|+|+|.-..+|++-. -+-.+ ......||.. | +...|.+|++.
T Consensus 74 ~~~nfnGts~G~m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~ 153 (196)
T PF06525_consen 74 NPFNFNGTSNGQMTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSA 153 (196)
T ss_pred CceeeecccCCcEEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCcee
Confidence 36778887554 799999999999999998655554332 22111 1234456632 2 12358899999
Q ss_pred EEEEEeCCCceeeEEccCchhhhhcCceeeEEEEeCCC
Q 010700 112 TYQFQVKDQVGSFFYFPSLHFQRASGGFGGFIINNRAI 149 (503)
Q Consensus 112 ~y~f~~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~ 149 (503)
.-.|... ++|.||+-|-...|...||++-|+|.+.-.
T Consensus 154 ~~~~~~l-~aG~YwlvC~ipGHA~sGMw~~LiVs~~vt 190 (196)
T PF06525_consen 154 SGVYNDL-PAGYYWLVCGIPGHAESGMWGVLIVSSNVT 190 (196)
T ss_pred eEEEccC-CCceEEEEccCCChhhcCCEEEEEEecCcc
Confidence 8777553 699999999999999999999999998653
No 48
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.71 E-value=0.0018 Score=68.98 Aligned_cols=85 Identities=19% Similarity=0.267 Sum_probs=66.4
Q ss_pred CeEEECCcCCCCCCCCCCCCCCCceeEEEeCCcEEEEEEeEeCCCCeeeEEEeCCcEE-EEEecCCccceeeecEEEEcC
Q 010700 190 DGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLL-LAETEGSYTVQQNYTSLDIHV 268 (503)
Q Consensus 190 ~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~-via~DG~~~~p~~~d~v~l~p 268 (503)
..++|||+.. .|.|.++.|+++.++++|-.. ..+.+|.||-+.. --..||.+ ...=.|.|
T Consensus 48 ~vi~iNG~fP-------------GP~I~~~~gD~ivV~v~N~~~-~~~sihWhGv~q~kn~w~DG~~-----~TqCPI~P 108 (563)
T KOG1263|consen 48 QVITINGQFP-------------GPTINAEEGDTIVVNVVNRLD-EPFSIHWHGVRQRKNPWQDGVY-----ITQCPIQP 108 (563)
T ss_pred eeEeecCCCC-------------CCeEEEEeCCEEEEEEEeCCC-CceEEEeccccccCCccccCCc-----cccCCcCC
Confidence 4799999975 499999999999999999854 4677777776543 23569944 33446899
Q ss_pred CceEEEEEEeCCCCCcceEEEEeeec
Q 010700 269 GQSYSFLVTMDQNASTDYYIVASARF 294 (503)
Q Consensus 269 GeR~dvlv~~~~~~g~~y~i~~~~~~ 294 (503)
||.+---++.++..| +||-.++...
T Consensus 109 g~~~tY~F~v~~q~G-T~~yh~h~~~ 133 (563)
T KOG1263|consen 109 GENFTYRFTVKDQIG-TLWYHSHVSW 133 (563)
T ss_pred CCeEEEEEEeCCcce-eEEEeecccc
Confidence 999999999996677 8998887764
No 49
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.65 E-value=0.00033 Score=58.74 Aligned_cols=76 Identities=11% Similarity=0.056 Sum_probs=49.1
Q ss_pred CceEEEecCCEEEEEEEeCCCCCeeEEE-ccCCCCCCCCCCCCCCCCCCCCCCCceEEEEEeCCCceeeEEccCchhhhh
Q 010700 57 GPTINVTTNNNVVVNVRNKLDESLLIHW-SGIQQRRSSWQDGLLGTNCPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRA 135 (503)
Q Consensus 57 gP~i~~~~Gd~v~v~v~N~l~~~~siH~-HG~~~~~~~~~DG~~~~q~~i~PG~~~~y~f~~~~~~Gt~wyH~H~~~q~~ 135 (503)
...|++++||+|+....|. ++++.+ .+. .-+|... ..-.+|+++++.|+ ++|+|-|+|- .+..
T Consensus 14 P~~v~V~~GdTV~f~n~d~---~Hnv~~~~~~------~p~g~~~--~~s~~g~~~~~tF~---~~G~Y~Y~C~--pH~~ 77 (116)
T TIGR02375 14 PAYIRAAPGDTVTFVPTDK---GHNVETIKGM------IPEGAEA--FKSKINEEYTVTVT---EEGVYGVKCT--PHYG 77 (116)
T ss_pred CCEEEECCCCEEEEEECCC---CeeEEEccCC------CcCCccc--ccCCCCCEEEEEeC---CCEEEEEEcC--CCcc
Confidence 4689999999965554443 455554 221 1122111 11235666666553 6899999998 5677
Q ss_pred cCceeeEEEEeCC
Q 010700 136 SGGFGGFIINNRA 148 (503)
Q Consensus 136 ~Gl~G~liV~~~~ 148 (503)
+||.|.|+|.++.
T Consensus 78 ~GM~G~V~Vg~~~ 90 (116)
T TIGR02375 78 MGMVALIQVGDPP 90 (116)
T ss_pred CCCEEEEEECCCC
Confidence 8999999998853
No 50
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=97.64 E-value=0.00047 Score=60.87 Aligned_cols=100 Identities=16% Similarity=0.135 Sum_probs=71.6
Q ss_pred EEEcCCCCC-ceEEEecCCEEEEEEEeCCCCCeeEEEccCCC----CCCCCCCCCC----CCC------CCCCCCCceEE
Q 010700 49 IAINGKFPG-PTINVTTNNNVVVNVRNKLDESLLIHWSGIQQ----RRSSWQDGLL----GTN------CPIPPKWNWTY 113 (503)
Q Consensus 49 ~~~Ng~~pg-P~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~----~~~~~~DG~~----~~q------~~i~PG~~~~y 113 (503)
+-|||+..| ++|.+..|-+|.|+|.|.-..++++-.==-.- ......||.. |.. .-|.+|++..=
T Consensus 75 fNfnGts~G~mtIyiPaGw~V~V~f~N~e~~pHnl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~sg 154 (195)
T TIGR03094 75 FNFNGTSYGAMTIYLPAGWNVYVTFTNYESLPHNLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRSG 154 (195)
T ss_pred ccccCccCCceEEEEeCCCEEEEEEEcCCCCCccEEEecCCCCCCCccccccCceeEeecccccCccccccccccceeEE
Confidence 566787665 79999999999999999977666654411100 0113456643 311 22568888665
Q ss_pred EEEeCCCceeeEEccCchhhhhcCceeeEEEEeCCC
Q 010700 114 QFQVKDQVGSFFYFPSLHFQRASGGFGGFIINNRAI 149 (503)
Q Consensus 114 ~f~~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~ 149 (503)
.|+. -++|+|||-|-.-.+..+||+|-+||-....
T Consensus 155 ~~~~-~~~G~YwlvCgipGHAesGMw~~lIVSs~vt 189 (195)
T TIGR03094 155 WWND-TSAGKYWLVCGITGHAESGMWAVVIVSSNVT 189 (195)
T ss_pred Eecc-CCCeeEEEEcccCChhhcCcEEEEEEecCcc
Confidence 5665 4899999999999999999999999987653
No 51
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=97.61 E-value=0.00011 Score=61.95 Aligned_cols=86 Identities=24% Similarity=0.232 Sum_probs=67.2
Q ss_pred CeEEECCcCCCCCCCCCCCCCCCceeEEEeCCcEEEEEEeEeCCCCeeeEEEeCCcEEEE-EecCCccceeeecEEEEcC
Q 010700 190 DGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLA-ETEGSYTVQQNYTSLDIHV 268 (503)
Q Consensus 190 ~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~vi-a~DG~~~~p~~~d~v~l~p 268 (503)
..+++||+.. .|+|+++.|+++++++.|.... ...+|+||....-- ..||..-.+ .-.|.|
T Consensus 15 ~~~~~ng~~p-------------GPtI~v~~Gd~v~i~~~N~l~~-~~siH~HG~~~~~~~~~DG~~~~~----~~~i~p 76 (117)
T PF07732_consen 15 KVWTYNGQFP-------------GPTIRVREGDTVRITVTNNLDE-PTSIHWHGLHQPPSPWMDGVPGVT----QCPIAP 76 (117)
T ss_dssp EEEEETTBSS-------------EEEEEEETTEEEEEEEEEESSS-GBSEEEETSBSTTGGGGSGGTTTS----GSSBST
T ss_pred EEEEECCCCC-------------CCEEEEEcCCeeEEEEEecccc-ccccccceeeeeeeeecCCccccc----ceeEEe
Confidence 5799999975 4999999999999999999854 78899988653211 256654211 235899
Q ss_pred CceEEEEEEeCCCCCcceEEEEeeec
Q 010700 269 GQSYSFLVTMDQNASTDYYIVASARF 294 (503)
Q Consensus 269 GeR~dvlv~~~~~~g~~y~i~~~~~~ 294 (503)
|+++...+++++.+| .||.+++...
T Consensus 77 G~~~~Y~~~~~~~~G-t~wYH~H~~~ 101 (117)
T PF07732_consen 77 GESFTYEFTANQQAG-TYWYHSHVHG 101 (117)
T ss_dssp TEEEEEEEEESSCSE-EEEEEECSTT
T ss_pred ecceeeeEeeecccc-ceeEeeCCCc
Confidence 999999999998678 9999988764
No 52
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.39 E-value=0.00088 Score=56.76 Aligned_cols=75 Identities=15% Similarity=0.195 Sum_probs=54.5
Q ss_pred ceEEEecCCEEEEEEEeCCCCCeeEEEccCCCCCCCCCCCCCCCCCCCCCCCceEEEEEeCCCceeeEEccCchhhhhcC
Q 010700 58 PTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLGTNCPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASG 137 (503)
Q Consensus 58 P~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DG~~~~q~~i~PG~~~~y~f~~~~~~Gt~wyH~H~~~q~~~G 137 (503)
-.|++++||+ |++.|.....++++.-+... .+|. ......+|++|++.|.. +|+|-|.|-. +..+|
T Consensus 54 A~v~v~pGDT--Vtw~~~d~~~Hnv~~~~~~~-----~~g~--~~~~~~~~~s~~~Tfe~---~G~Y~Y~C~P--H~~~g 119 (128)
T COG3794 54 AEVTVKPGDT--VTWVNTDSVGHNVTAVGGMD-----PEGS--GTLKAGINESFTHTFET---PGEYTYYCTP--HPGMG 119 (128)
T ss_pred cEEEECCCCE--EEEEECCCCCceEEEeCCCC-----cccc--cccccCCCcceEEEecc---cceEEEEecc--CCCCC
Confidence 5899999999 78899988788888766521 1221 12334456777777764 8999999954 35589
Q ss_pred ceeeEEEEe
Q 010700 138 GFGGFIINN 146 (503)
Q Consensus 138 l~G~liV~~ 146 (503)
|.|.|+|++
T Consensus 120 M~G~IvV~~ 128 (128)
T COG3794 120 MKGKIVVGE 128 (128)
T ss_pred cEEEEEeCC
Confidence 999999974
No 53
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=97.13 E-value=0.0026 Score=53.20 Aligned_cols=74 Identities=16% Similarity=0.144 Sum_probs=50.3
Q ss_pred CceEEEecCCEEEEEEEeCC-CCCeeEEEccCCCCCCCCCCCCCCCCCCCCCCCceEEEEEeCCCceeeEEccCchhhhh
Q 010700 57 GPTINVTTNNNVVVNVRNKL-DESLLIHWSGIQQRRSSWQDGLLGTNCPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRA 135 (503)
Q Consensus 57 gP~i~~~~Gd~v~v~v~N~l-~~~~siH~HG~~~~~~~~~DG~~~~q~~i~PG~~~~y~f~~~~~~Gt~wyH~H~~~q~~ 135 (503)
.+.|++++||+| +++|+. ..++++..-+- ...|- ......||++|+|.|. ++|+|-|+|-. +..
T Consensus 41 P~~ltV~~GdTV--tw~~~~d~~~HnV~s~~~-----~~f~s---~~~~~~~G~t~s~Tf~---~~G~Y~Y~C~p--H~~ 105 (115)
T TIGR03102 41 PPAIRVDPGTTV--VWEWTGEGGGHNVVSDGD-----GDLDE---SERVSEEGTTYEHTFE---EPGIYLYVCVP--HEA 105 (115)
T ss_pred CCEEEECCCCEE--EEEECCCCCCEEEEECCC-----CCccc---cccccCCCCEEEEEec---CCcEEEEEccC--CCC
Confidence 468999999995 577653 46666654210 00110 1123578999999995 58999999973 355
Q ss_pred cCceeeEEEE
Q 010700 136 SGGFGGFIIN 145 (503)
Q Consensus 136 ~Gl~G~liV~ 145 (503)
+||.|.|+|+
T Consensus 106 ~gM~G~I~V~ 115 (115)
T TIGR03102 106 LGMKGAVVVE 115 (115)
T ss_pred CCCEEEEEEC
Confidence 7899999984
No 54
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=96.16 E-value=0.028 Score=49.41 Aligned_cols=86 Identities=19% Similarity=0.169 Sum_probs=56.3
Q ss_pred CCCeEEECCcCCCCCCCCCCCCCCCceeEEEeCCcEEEEEEeEeCCCCeeeEEEeCCc--EEEE-EecCCccceeeecEE
Q 010700 188 MPDGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHN--LLLA-ETEGSYTVQQNYTSL 264 (503)
Q Consensus 188 ~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~--~~vi-a~DG~~~~p~~~d~v 264 (503)
....+.+||... |.|++++|+++++++.|......|.|.|+.+. +... ..||.... .+..
T Consensus 40 ~~~~f~~~~~~~--------------P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~---~~~~ 102 (148)
T TIGR03095 40 SMYSFEIHDLKN--------------PTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFV---AGTG 102 (148)
T ss_pred CceeEEecCCCC--------------CEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCcc---ccCc
Confidence 356899999876 99999999999999999876445666665432 2111 34554311 1111
Q ss_pred EEc---CCce--EEEEEEeCCCCCcceEEEEee
Q 010700 265 DIH---VGQS--YSFLVTMDQNASTDYYIVASA 292 (503)
Q Consensus 265 ~l~---pGeR--~dvlv~~~~~~g~~y~i~~~~ 292 (503)
.+. +|+. .++.+++++ +| .||..+..
T Consensus 103 i~p~~~~g~~~~~~~tf~f~~-aG-tywyhC~~ 133 (148)
T TIGR03095 103 FLPPPKSGKFGYTDFTYHFST-AG-TYWYLCTY 133 (148)
T ss_pred ccCCCCCCccceeEEEEECCC-Ce-EEEEEcCC
Confidence 222 2444 588888884 67 99998764
No 55
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=95.84 E-value=0.038 Score=47.27 Aligned_cols=62 Identities=23% Similarity=0.287 Sum_probs=50.0
Q ss_pred ceeEEEeCCcEEEEEEeEeCCCCeeeEEEeCCcEEEEEecCCccceeeecEEEEcCCceEEEEEEeCCCCCcceEEEEee
Q 010700 213 YETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASA 292 (503)
Q Consensus 213 ~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dvlv~~~~~~g~~y~i~~~~ 292 (503)
+..++|++|++++|++.|.... .|.+.++++.+ ...|.|||+..+.+.+++ +| .|+..+..
T Consensus 60 P~~I~VkaGD~Vtl~vtN~d~~-~H~f~i~~~gi----------------s~~I~pGet~TitF~adK-pG-~Y~y~C~~ 120 (135)
T TIGR03096 60 PEALVVKKGTPVKVTVENKSPI-SEGFSIDAYGI----------------SEVIKAGETKTISFKADK-AG-AFTIWCQL 120 (135)
T ss_pred CCEEEECCCCEEEEEEEeCCCC-ccceEECCCCc----------------ceEECCCCeEEEEEECCC-CE-EEEEeCCC
Confidence 4789999999999999998874 77777776521 466899999999999995 57 89987754
Q ss_pred e
Q 010700 293 R 293 (503)
Q Consensus 293 ~ 293 (503)
-
T Consensus 121 H 121 (135)
T TIGR03096 121 H 121 (135)
T ss_pred C
Confidence 3
No 56
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=95.76 E-value=0.068 Score=46.43 Aligned_cols=89 Identities=10% Similarity=0.097 Sum_probs=64.9
Q ss_pred CCCCceEEEecCCEEEEEEEeCCC--CCeeEE---------EccCCCCCCCCCCCCCCCCCCCCCCCceEEEEEeCCCce
Q 010700 54 KFPGPTINVTTNNNVVVNVRNKLD--ESLLIH---------WSGIQQRRSSWQDGLLGTNCPIPPKWNWTYQFQVKDQVG 122 (503)
Q Consensus 54 ~~pgP~i~~~~Gd~v~v~v~N~l~--~~~siH---------~HG~~~~~~~~~DG~~~~q~~i~PG~~~~y~f~~~~~~G 122 (503)
.|++-.+.++.|++++..+.|... ...++- -|.... ..+++-.....-+.||++-+..|..+ .+|
T Consensus 59 ~f~p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~---~Dme~d~~~~v~L~PG~s~elvv~ft-~~g 134 (158)
T COG4454 59 SFKPSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILA---DDMEHDDPNTVTLAPGKSGELVVVFT-GAG 134 (158)
T ss_pred ccCCCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhC---CccccCCcceeEeCCCCcEEEEEEec-CCc
Confidence 456778999999999999999843 222221 122221 12333222235589999999999995 799
Q ss_pred eeEEccCchhhhhcCceeeEEEEe
Q 010700 123 SFFYFPSLHFQRASGGFGGFIINN 146 (503)
Q Consensus 123 t~wyH~H~~~q~~~Gl~G~liV~~ 146 (503)
.|-+-|-...++..||.|-|.|.+
T Consensus 135 ~ye~~C~iPGHy~AGM~g~itV~p 158 (158)
T COG4454 135 KYEFACNIPGHYEAGMVGEITVSP 158 (158)
T ss_pred cEEEEecCCCcccCCcEEEEEeCC
Confidence 999999999999999999998864
No 57
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=94.81 E-value=0.28 Score=49.68 Aligned_cols=78 Identities=17% Similarity=0.218 Sum_probs=54.5
Q ss_pred CCCCceEEEecCCEEEEEEEeCCCCCeeEEEccCCCCCCCCCCCCC--CCCCCCCCCCceEEEEEeCCCceeeEEccCch
Q 010700 54 KFPGPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLL--GTNCPIPPKWNWTYQFQVKDQVGSFFYFPSLH 131 (503)
Q Consensus 54 ~~pgP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DG~~--~~q~~i~PG~~~~y~f~~~~~~Gt~wyH~H~~ 131 (503)
.+--..+.+..|+ +.+.|+|....++..-.- +|+- +....|.||.+..+.+++ .+|+|-|+|-.
T Consensus 40 ~c~p~~~tVpAG~-~~f~V~N~~~~~~Efe~~----------~~~~vv~e~EnIaPG~s~~l~~~L--~pGtY~~~C~~- 105 (375)
T PRK10378 40 QCEPMTLTVNAGK-TQFIIQNHSQKALEWEIL----------KGVMVVEERENIAPGFSQKMTANL--QPGEYDMTCGL- 105 (375)
T ss_pred ccccCceeeCCCC-EEEEEEeCCCCcceEEee----------ccccccccccccCCCCceEEEEec--CCceEEeecCc-
Confidence 4545689999996 899999997766442111 1111 123469999999988877 49999999933
Q ss_pred hhhhcCceeeEEEEeCC
Q 010700 132 FQRASGGFGGFIINNRA 148 (503)
Q Consensus 132 ~q~~~Gl~G~liV~~~~ 148 (503)
+ ..+.|.|+|....
T Consensus 106 -~--~~~~g~l~Vtg~~ 119 (375)
T PRK10378 106 -L--TNPKGKLIVKGEA 119 (375)
T ss_pred -C--CCCCceEEEeCCC
Confidence 2 3358999998753
No 58
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=94.80 E-value=0.11 Score=42.64 Aligned_cols=61 Identities=18% Similarity=0.179 Sum_probs=42.4
Q ss_pred ceeEEEeCCcEEEEEEeEeCCCCeeeEEEeCCcEEEEEecCCccceeeecEEEEcCCceEEEEEEeCCCCCcceEEEEee
Q 010700 213 YETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASA 292 (503)
Q Consensus 213 ~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dvlv~~~~~~g~~y~i~~~~ 292 (503)
+..+++++|+.++|.+.|.+.. .|.|.+++. .....|.||+...+.|.+. .+| .|.+.+..
T Consensus 34 P~~i~v~~G~~v~l~~~N~~~~-~h~~~i~~~----------------~~~~~l~~g~~~~~~f~~~-~~G-~y~~~C~~ 94 (104)
T PF13473_consen 34 PSTITVKAGQPVTLTFTNNDSR-PHEFVIPDL----------------GISKVLPPGETATVTFTPL-KPG-EYEFYCTM 94 (104)
T ss_dssp S-EEEEETTCEEEEEEEE-SSS--EEEEEGGG----------------TEEEEE-TT-EEEEEEEE--S-E-EEEEB-SS
T ss_pred cCEEEEcCCCeEEEEEEECCCC-cEEEEECCC----------------ceEEEECCCCEEEEEEcCC-CCE-EEEEEcCC
Confidence 4789999999999999999876 477777662 1236789999999999777 467 89887654
No 59
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=94.68 E-value=0.17 Score=42.79 Aligned_cols=74 Identities=12% Similarity=0.061 Sum_probs=51.1
Q ss_pred CceEEEecCCEEEEEEEeCCCCCeeEEEccCCCCCCCCCCCCCCCCCCCCCCCceEEEEEeCCCceeeEEccCch-hhhh
Q 010700 57 GPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLGTNCPIPPKWNWTYQFQVKDQVGSFFYFPSLH-FQRA 135 (503)
Q Consensus 57 gP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DG~~~~q~~i~PG~~~~y~f~~~~~~Gt~wyH~H~~-~q~~ 135 (503)
.+.|.+..|+.|++.+++. +.-++....++..+ .-+-||+.....|++ +++|+|++.|..- ....
T Consensus 45 ~~~l~lp~g~~v~~~ltS~-DViHsf~ip~~~~k------------~d~~PG~~~~~~~~~-~~~G~y~~~C~e~CG~gH 110 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSE-DVIHSFWIPELGIK------------MDAIPGRTNSVTFTP-DKPGTYYGQCAEYCGAGH 110 (120)
T ss_dssp SSEEEEETTSEEEEEEEES-SS-EEEEETTCTEE------------EEEBTTCEEEEEEEE-SSSEEEEEEE-SSSSTTG
T ss_pred cceecccccceEeEEEEcC-CccccccccccCcc------------cccccccceeeeeee-ccCCcEEEcCccccCcCc
Confidence 4799999999999999995 55555555544321 236789999999998 6899999999731 1222
Q ss_pred cCceeeEEE
Q 010700 136 SGGFGGFII 144 (503)
Q Consensus 136 ~Gl~G~liV 144 (503)
..|.|.++|
T Consensus 111 ~~M~~~v~V 119 (120)
T PF00116_consen 111 SFMPGKVIV 119 (120)
T ss_dssp GG-EEEEEE
T ss_pred CCCeEEEEE
Confidence 336676665
No 60
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=94.68 E-value=0.14 Score=42.95 Aligned_cols=86 Identities=14% Similarity=0.053 Sum_probs=55.5
Q ss_pred CceEEEec-CCEEEEEEEeCCCCCeeEEEccCCCCC--------------CCCCCCCCC-------CCCCCCCCCceEEE
Q 010700 57 GPTINVTT-NNNVVVNVRNKLDESLLIHWSGIQQRR--------------SSWQDGLLG-------TNCPIPPKWNWTYQ 114 (503)
Q Consensus 57 gP~i~~~~-Gd~v~v~v~N~l~~~~siH~HG~~~~~--------------~~~~DG~~~-------~q~~i~PG~~~~y~ 114 (503)
-..|.|+. |.+|.|+|+|....+...--|.+-... ....|=+|- ....|.|||+.+..
T Consensus 15 ~~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svt 94 (125)
T TIGR02695 15 TKSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVT 94 (125)
T ss_pred ccEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEE
Confidence 36899998 489999999985544333333211000 001111221 22448999999999
Q ss_pred EEeCC-Ccee-eEEccCchhhhhcCceeeEE
Q 010700 115 FQVKD-QVGS-FFYFPSLHFQRASGGFGGFI 143 (503)
Q Consensus 115 f~~~~-~~Gt-~wyH~H~~~q~~~Gl~G~li 143 (503)
|+++. ++|+ |-|-|-.-.+.. .|.|.|.
T Consensus 95 F~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 95 FDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred EECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 99863 5786 999999877766 4888875
No 61
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=92.48 E-value=0.35 Score=39.33 Aligned_cols=70 Identities=16% Similarity=0.108 Sum_probs=42.9
Q ss_pred ceeEEEeCCcEEEEEEeEeCCCCeeeEEEeCCcEEEEEecCCccceeeecEEEEcCCceEEEEEEeCCCCCcceEEEEe
Q 010700 213 YETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVAS 291 (503)
Q Consensus 213 ~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dvlv~~~~~~g~~y~i~~~ 291 (503)
+..+++++|++|+|. |.+.. .|.+.++...+..-+.+. ......+.+.+.||+++++.+.. +| .|...+.
T Consensus 16 P~~i~v~~G~~V~~~--N~~~~-~H~~~~~~~~~~~~~~~~--~~~~~~~~~~~~pG~t~~~tF~~---~G-~y~y~C~ 85 (99)
T TIGR02656 16 PAKISIAAGDTVEWV--NNKGG-PHNVVFDEDAVPAGVKEL--AKSLSHKDLLNSPGESYEVTFST---PG-TYTFYCE 85 (99)
T ss_pred CCEEEECCCCEEEEE--ECCCC-CceEEECCCCCccchhhh--cccccccccccCCCCEEEEEeCC---CE-EEEEEcC
Confidence 467999999998665 76643 666666533211100000 00112256788999999986553 57 8988876
No 62
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=90.96 E-value=3.4 Score=37.68 Aligned_cols=90 Identities=27% Similarity=0.211 Sum_probs=59.3
Q ss_pred CeEEECCcCCCCCCCCCCCCCCCceeEEEeCCcEEEEEEeEeCCCCeeeEEEeCC-----cEEEEEecCCccc-----ee
Q 010700 190 DGVLINGKGPYQYNTTLVPDGIDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNH-----NLLLAETEGSYTV-----QQ 259 (503)
Q Consensus 190 ~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh-----~~~via~DG~~~~-----p~ 259 (503)
+.+-+||... ...++-+..|-+|.++++|.+.+ .|.|-+--- ....++.||..+. +.
T Consensus 74 ~~~nfnGts~------------G~m~i~VPAGw~V~i~f~N~~~l-~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~ 140 (196)
T PF06525_consen 74 NPFNFNGTSN------------GQMTIYVPAGWNVQITFTNQESL-PHNLVIVQNDTPTPNNPPISSDGKILLYVGASPG 140 (196)
T ss_pred CceeeecccC------------CcEEEEEcCCCEEEEEEEcCCCC-CeeEEEEeCCCCCCCccccCCCCceeeeccCCCC
Confidence 4677788765 23889999999999999998876 666555211 1235667776542 11
Q ss_pred eecEEEEcCCceEEEEEEeCCCCCcceEEEEeeec
Q 010700 260 NYTSLDIHVGQSYSFLVTMDQNASTDYYIVASARF 294 (503)
Q Consensus 260 ~~d~v~l~pGeR~dvlv~~~~~~g~~y~i~~~~~~ 294 (503)
.-..--|.+||+....+..- ++| .||+.+....
T Consensus 141 ~~~~~GI~~G~s~~~~~~~l-~aG-~YwlvC~ipG 173 (196)
T PF06525_consen 141 NYTSNGISSGQSASGVYNDL-PAG-YYWLVCGIPG 173 (196)
T ss_pred ccccCCccCCceeeEEEccC-CCc-eEEEEccCCC
Confidence 11122466999998776533 578 9999876543
No 63
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=89.09 E-value=1.4 Score=42.16 Aligned_cols=79 Identities=8% Similarity=-0.087 Sum_probs=59.3
Q ss_pred CceEEEecCCEEEEEEEeCCCCCeeEEEccCCCCCCCCCCCCCCCCCCCCCCCceEEEEEeCCCceeeEEccCc-hhhhh
Q 010700 57 GPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLGTNCPIPPKWNWTYQFQVKDQVGSFFYFPSL-HFQRA 135 (503)
Q Consensus 57 gP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DG~~~~q~~i~PG~~~~y~f~~~~~~Gt~wyH~H~-~~q~~ 135 (503)
...|.+..|.+|+++++-. +.-++....++.. +.-.-||...++.+++ +++|+|.-+|+- .....
T Consensus 136 ~n~l~lPv~~~V~f~ltS~-DViHsF~IP~l~~------------k~d~iPG~~~~~~~~~-~~~G~Y~g~Cae~CG~gH 201 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSA-DVIHSFWIPQLGG------------KIDAIPGMTTELWLTA-NKPGTYRGICAEYCGPGH 201 (247)
T ss_pred cceEEEeCCCeEEEEEEec-hhceeEEecCCCc------------eeeecCCceEEEEEec-CCCeEEEEEcHhhcCCCc
Confidence 3899999999999998876 4444554444422 2336789999999998 789999999983 34555
Q ss_pred cCceeeEEEEeCCC
Q 010700 136 SGGFGGFIINNRAI 149 (503)
Q Consensus 136 ~Gl~G~liV~~~~~ 149 (503)
..|.|.++|.++++
T Consensus 202 ~~M~~~v~vvs~~~ 215 (247)
T COG1622 202 SFMRFKVIVVSQED 215 (247)
T ss_pred ccceEEEEEEcHHH
Confidence 67999999998753
No 64
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=86.81 E-value=1.9 Score=40.08 Aligned_cols=78 Identities=14% Similarity=0.055 Sum_probs=54.5
Q ss_pred CceEEEecCCEEEEEEEeCCCCCeeEEEccCCCCCCCCCCCCCCCCCCCCCCCceEEEEEeCCCceeeEEccCc-hhhhh
Q 010700 57 GPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLGTNCPIPPKWNWTYQFQVKDQVGSFFYFPSL-HFQRA 135 (503)
Q Consensus 57 gP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DG~~~~q~~i~PG~~~~y~f~~~~~~Gt~wyH~H~-~~q~~ 135 (503)
...|.+..|+.|++++++.. .- ||..... . | -+..+-||..-+..|++ +++|+|...|.. -....
T Consensus 116 ~~~l~vp~g~~v~~~~ts~D-V~-----Hsf~ip~---~-~---~k~da~PG~~~~~~~~~-~~~G~y~~~c~e~cG~~h 181 (201)
T TIGR02866 116 VNELVVPAGTPVRLQVTSKD-VI-----HSFWVPE---L-G---GKIDAIPGQYNALWFNA-DEPGVYYGYCAELCGAGH 181 (201)
T ss_pred cCEEEEEcCCEEEEEEEeCc-hh-----hcccccc---c-C---ceEEecCCcEEEEEEEe-CCCEEEEEEehhhCCcCc
Confidence 35899999999999999852 11 5543311 1 1 12346689999999988 689999999973 12223
Q ss_pred cCceeeEEEEeCC
Q 010700 136 SGGFGGFIINNRA 148 (503)
Q Consensus 136 ~Gl~G~liV~~~~ 148 (503)
..|.+.++|.+++
T Consensus 182 ~~M~~~v~v~~~~ 194 (201)
T TIGR02866 182 SLMLFKVVVVERE 194 (201)
T ss_pred cCCeEEEEEECHH
Confidence 5589999988753
No 65
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=85.90 E-value=3.4 Score=36.10 Aligned_cols=77 Identities=17% Similarity=0.247 Sum_probs=52.8
Q ss_pred ceeEEEeCCcEEEEEEeEeCCCCeeeEEEe--C----CcEEEEEecCCccceeeecEEEEcCCceEEEEEEeCCCCCcce
Q 010700 213 YETIEVHPGKTYRIRVHNVGISTSLNFRIQ--N----HNLLLAETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDY 286 (503)
Q Consensus 213 ~~~~~v~~G~~~rlRliN~g~~~~~~~~i~--g----h~~~via~DG~~~~p~~~d~v~l~pGeR~dvlv~~~~~~g~~y 286 (503)
...++++.|+++|+-+-|.+.. .|.|-++ + |.-..+.+| ..+--...++.|.||+...+.+++.++ | .|
T Consensus 62 p~~~~v~aG~tv~~v~~n~~el-~hef~~~~~~~~~~~~~~~~~~~--Dme~d~~~~v~L~PG~s~elvv~ft~~-g-~y 136 (158)
T COG4454 62 PSSFEVKAGETVRFVLKNEGEL-KHEFTMDAPDKNLEHVTHMILAD--DMEHDDPNTVTLAPGKSGELVVVFTGA-G-KY 136 (158)
T ss_pred CCcccccCCcEEeeeecCcccc-eEEEeccCccccchhHHHhhhCC--ccccCCcceeEeCCCCcEEEEEEecCC-c-cE
Confidence 3678999999999999998875 6666655 1 111111112 111123568999999999999999864 6 79
Q ss_pred EEEEeeec
Q 010700 287 YIVASARF 294 (503)
Q Consensus 287 ~i~~~~~~ 294 (503)
.+++....
T Consensus 137 e~~C~iPG 144 (158)
T COG4454 137 EFACNIPG 144 (158)
T ss_pred EEEecCCC
Confidence 88876543
No 66
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=85.90 E-value=7.6 Score=32.75 Aligned_cols=61 Identities=18% Similarity=0.268 Sum_probs=46.2
Q ss_pred ceeEEEeCCcEEEEEEeEeCCCCeeeEEEeCCcEEEEEecCCccceeeecEEEEcCCceEEEEEEeCCCCCcceEEEEee
Q 010700 213 YETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASA 292 (503)
Q Consensus 213 ~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dvlv~~~~~~g~~y~i~~~~ 292 (503)
...+.++.|+.++|++-+.. -.|.|.+.+..++ +.+-||+.-.+-+++++ +| .|+++++-
T Consensus 45 ~~~l~lp~g~~v~~~ltS~D--ViHsf~ip~~~~k----------------~d~~PG~~~~~~~~~~~-~G-~y~~~C~e 104 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSED--VIHSFWIPELGIK----------------MDAIPGRTNSVTFTPDK-PG-TYYGQCAE 104 (120)
T ss_dssp SSEEEEETTSEEEEEEEESS--S-EEEEETTCTEE----------------EEEBTTCEEEEEEEESS-SE-EEEEEE-S
T ss_pred cceecccccceEeEEEEcCC--ccccccccccCcc----------------cccccccceeeeeeecc-CC-cEEEcCcc
Confidence 36899999999999998844 4788888877654 34568888888888884 57 89998865
Q ss_pred e
Q 010700 293 R 293 (503)
Q Consensus 293 ~ 293 (503)
.
T Consensus 105 ~ 105 (120)
T PF00116_consen 105 Y 105 (120)
T ss_dssp S
T ss_pred c
Confidence 3
No 67
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=84.35 E-value=11 Score=29.31 Aligned_cols=66 Identities=17% Similarity=0.278 Sum_probs=36.1
Q ss_pred EEEEEeEeCCCCeeeEEEe-CCcEEE--EEecCCccce--------eeecEEEEcCCceEEEEEEeCCCC--CcceEEEE
Q 010700 224 YRIRVHNVGISTSLNFRIQ-NHNLLL--AETEGSYTVQ--------QNYTSLDIHVGQSYSFLVTMDQNA--STDYYIVA 290 (503)
Q Consensus 224 ~rlRliN~g~~~~~~~~i~-gh~~~v--ia~DG~~~~p--------~~~d~v~l~pGeR~dvlv~~~~~~--g~~y~i~~ 290 (503)
..|.+.|.+.. ...|.+. |+++.+ ...+|..+-. +......|.|||...+-.+.+... ++.|.+.+
T Consensus 4 ~~l~v~N~s~~-~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~a 82 (82)
T PF12690_consen 4 FTLTVTNNSDE-PVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTLEA 82 (82)
T ss_dssp EEEEEEE-SSS--EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEEEE
T ss_pred EEEEEEeCCCC-eEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEEeC
Confidence 46788888765 6666654 555444 4456665521 234578999999999999988653 33888754
No 68
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=82.74 E-value=11 Score=37.60 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=17.7
Q ss_pred CCCC-CCCCCCCCCceEEEEEeC
Q 010700 97 GLLG-TNCPIPPKWNWTYQFQVK 118 (503)
Q Consensus 97 G~~~-~q~~i~PG~~~~y~f~~~ 118 (503)
|... .+.||+|||+.+.+.++.
T Consensus 331 GL~v~d~~pI~PGETr~v~v~aq 353 (399)
T TIGR03079 331 GLEVDDQSAIAPGETVEVKMEAK 353 (399)
T ss_pred cceeCCCCCcCCCcceEEEEEEe
Confidence 4444 467899999999999985
No 69
>PRK02710 plastocyanin; Provisional
Probab=81.45 E-value=4.8 Score=33.90 Aligned_cols=60 Identities=17% Similarity=0.192 Sum_probs=39.4
Q ss_pred ceeEEEeCCcEEEEEEeEeCCCCeeeEEEeCCcEEEEEecCCccceeeecEEEEcCCceEEEEEEeCCCCCcceEEEEe
Q 010700 213 YETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVAS 291 (503)
Q Consensus 213 ~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dvlv~~~~~~g~~y~i~~~ 291 (503)
+..+++++|++++| +|.+.. .|.+.+++.. + .....+.+.||+++++.++. +| .|...+.
T Consensus 46 P~~i~v~~Gd~V~~--~N~~~~-~H~v~~~~~~-------~-----~~~~~~~~~pg~t~~~tF~~---~G-~y~y~C~ 105 (119)
T PRK02710 46 PSTLTIKAGDTVKW--VNNKLA-PHNAVFDGAK-------E-----LSHKDLAFAPGESWEETFSE---AG-TYTYYCE 105 (119)
T ss_pred CCEEEEcCCCEEEE--EECCCC-CceEEecCCc-------c-----ccccccccCCCCEEEEEecC---CE-EEEEEcC
Confidence 47899999998766 576543 5666555321 1 11223568999999976654 57 8888775
No 70
>PRK02888 nitrous-oxide reductase; Validated
Probab=80.39 E-value=5.1 Score=43.32 Aligned_cols=63 Identities=17% Similarity=0.258 Sum_probs=40.8
Q ss_pred ceeEEEeCCcEEEEEEeEeCC--CCeeeEEEeCCcEEEEEecCCccceeeecEEEEcCCceEEEEEEeCCCCCcceEEEE
Q 010700 213 YETIEVHPGKTYRIRVHNVGI--STSLNFRIQNHNLLLAETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVA 290 (503)
Q Consensus 213 ~~~~~v~~G~~~rlRliN~g~--~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dvlv~~~~~~g~~y~i~~ 290 (503)
...++|+.|+.|+|+|-|.-. --.|.|.|.++.+ .+.+.||+...+.+++++ +| .||+.+
T Consensus 554 p~~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI----------------~~dv~PG~t~svtF~adk-PG-vy~~~C 615 (635)
T PRK02888 554 LREFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGV----------------NMEVAPQATASVTFTADK-PG-VYWYYC 615 (635)
T ss_pred CceEEecCCCEEEEEEEeCCcccccccceeecccCc----------------cEEEcCCceEEEEEEcCC-CE-EEEEEC
Confidence 345666667777777766422 1244455544432 246779999999999995 57 899977
Q ss_pred eee
Q 010700 291 SAR 293 (503)
Q Consensus 291 ~~~ 293 (503)
+-.
T Consensus 616 tef 618 (635)
T PRK02888 616 TWF 618 (635)
T ss_pred Ccc
Confidence 643
No 71
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=77.65 E-value=3.4 Score=42.27 Aligned_cols=77 Identities=19% Similarity=0.262 Sum_probs=48.8
Q ss_pred eEEEecCCEEEEEEEeCCCCCeeEEEccCCCCCCCCCCCCCCCCCCCCCCCceEEEEEeCCCceeeEEccCch-hhhhcC
Q 010700 59 TINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLGTNCPIPPKWNWTYQFQVKDQVGSFFYFPSLH-FQRASG 137 (503)
Q Consensus 59 ~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DG~~~~q~~i~PG~~~~y~f~~~~~~Gt~wyH~H~~-~q~~~G 137 (503)
++.|++||.|++.++|-.....-+ ||.-.. .-|+ ..-+.|.++-.|.|.+ +.+|.+||-|--. .-+-+-
T Consensus 559 ef~Vkq~DEVt~l~tnld~Ved~t--hgfv~p----~~~v---~~~v~pq~tasvtf~a-~kpgv~w~ycs~fchalh~e 628 (637)
T COG4263 559 EFKVKQGDEVTVLTTNLDEVEDLT--HGFVIP----NYGV---NMEVKPQRTASVTFYA-DKPGVAWYYCSWFCHALHME 628 (637)
T ss_pred EEEEecCcEEEEEecccceecccc--ceeeec----cCce---EEEEccCCceEEEEEc-cCCeeeehhhhhHHHHHHHh
Confidence 677888888888777765433332 232111 1111 1337888999999999 6899999987532 233344
Q ss_pred ceeeEEEE
Q 010700 138 GFGGFIIN 145 (503)
Q Consensus 138 l~G~liV~ 145 (503)
|.|-++|+
T Consensus 629 m~~rmlve 636 (637)
T COG4263 629 MAGRMLVE 636 (637)
T ss_pred hccceeec
Confidence 77777776
No 72
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=76.96 E-value=3.2 Score=34.34 Aligned_cols=55 Identities=18% Similarity=0.262 Sum_probs=34.5
Q ss_pred EEEEEeCCCCC---eeEEEccCCCCC---CCCCCCCCCCCCCCCCCCceEEEEEeC--CCcee
Q 010700 69 VVNVRNKLDES---LLIHWSGIQQRR---SSWQDGLLGTNCPIPPKWNWTYQFQVK--DQVGS 123 (503)
Q Consensus 69 ~v~v~N~l~~~---~siH~HG~~~~~---~~~~DG~~~~q~~i~PG~~~~y~f~~~--~~~Gt 123 (503)
.|++.|....+ .+=|||=-...+ .-.-+||-|.|..|+||++|+|.=-.+ ...|+
T Consensus 33 titI~N~g~~~vqLlsR~W~ITd~~g~v~eV~G~GVVGeQP~l~PG~~y~YtSg~~l~Tp~G~ 95 (126)
T COG2967 33 TVTIRNLGEVPVQLLSRYWLITDGNGRVTEVEGEGVVGEQPLLAPGEEYQYTSGCPLDTPSGT 95 (126)
T ss_pred EEEEecCCCccceeeeeEEEEecCCCcEEEEEcCceeccccccCCCCceEEcCCcCccCCcce
Confidence 36667776544 356898332211 123566666788899999999975443 23565
No 73
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=75.21 E-value=15 Score=29.68 Aligned_cols=66 Identities=21% Similarity=0.204 Sum_probs=42.1
Q ss_pred CceeEEEeCCcEEEEEEeEeCCCCeeeEEEeCCcEEEEEecCCc--cc----eeeecEEEEcCCceEEEEEEeCCCCCcc
Q 010700 212 DYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSY--TV----QQNYTSLDIHVGQSYSFLVTMDQNASTD 285 (503)
Q Consensus 212 ~~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~via~DG~~--~~----p~~~d~v~l~pGeR~dvlv~~~~~~g~~ 285 (503)
.+..+++++|++++ ++|.+.. .|.+.+.. |+.. .+ +....+..+.+|+.+++-++ .+| .
T Consensus 15 ~P~~i~V~~G~tV~--~~n~~~~-~Hnv~~~~--------~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~---~~G-~ 79 (99)
T PF00127_consen 15 DPSEITVKAGDTVT--FVNNDSM-PHNVVFVA--------DGMPAGADSDYVPPGDSSPLLAPGETYSVTFT---KPG-T 79 (99)
T ss_dssp ESSEEEEETTEEEE--EEEESSS-SBEEEEET--------TSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE---SSE-E
T ss_pred eCCEEEECCCCEEE--EEECCCC-CceEEEec--------ccccccccccccCccccceecCCCCEEEEEeC---CCe-E
Confidence 35789999999875 5665443 44444433 2221 11 11115678999999999887 457 7
Q ss_pred eEEEEee
Q 010700 286 YYIVASA 292 (503)
Q Consensus 286 y~i~~~~ 292 (503)
|...+.+
T Consensus 80 y~y~C~P 86 (99)
T PF00127_consen 80 YEYYCTP 86 (99)
T ss_dssp EEEEETT
T ss_pred EEEEcCC
Confidence 9888764
No 74
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=73.64 E-value=26 Score=29.62 Aligned_cols=80 Identities=16% Similarity=0.243 Sum_probs=50.0
Q ss_pred ceeEEEeC-CcEEEEEEeEeCCCC----eeeEEEe-CCcEEEEE-------ecCCcccee----eecEEEEcCCceEEEE
Q 010700 213 YETIEVHP-GKTYRIRVHNVGIST----SLNFRIQ-NHNLLLAE-------TEGSYTVQQ----NYTSLDIHVGQSYSFL 275 (503)
Q Consensus 213 ~~~~~v~~-G~~~rlRliN~g~~~----~~~~~i~-gh~~~via-------~DG~~~~p~----~~d~v~l~pGeR~dvl 275 (503)
...|+|++ ++.+.+.|-|.|... .|.+-|- .-.+.-|+ .|-+|+.+- ...+=.|++||..+|-
T Consensus 15 ~~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svt 94 (125)
T TIGR02695 15 TKSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVT 94 (125)
T ss_pred ccEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEE
Confidence 37899998 489999999998642 2333331 11122222 234555331 2346689999999999
Q ss_pred EEeCC-CCCcceEEEEee
Q 010700 276 VTMDQ-NASTDYYIVASA 292 (503)
Q Consensus 276 v~~~~-~~g~~y~i~~~~ 292 (503)
|+++. .+|++|...++.
T Consensus 95 F~~~~l~~g~~Y~f~CSF 112 (125)
T TIGR02695 95 FDVSKLSAGEDYTFFCSF 112 (125)
T ss_pred EECCCCCCCCcceEEEcC
Confidence 99874 345379886654
No 75
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=70.63 E-value=22 Score=27.68 Aligned_cols=57 Identities=19% Similarity=0.279 Sum_probs=28.6
Q ss_pred eEEEecCCEEEEEEEeCCCCCeeEEEccCCCCCCCCCCCCCCCC----CCCCCCCceEEEEEeCCC---ceeeEE
Q 010700 59 TINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLGTN----CPIPPKWNWTYQFQVKDQ---VGSFFY 126 (503)
Q Consensus 59 ~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DG~~~~q----~~i~PG~~~~y~f~~~~~---~Gt~wy 126 (503)
+|+..-|++..+.|.|.-.+. +. -|++|..-+| ..|+||++.+|++..+.. +|+|..
T Consensus 17 ~l~f~sgq~~D~~v~d~~g~~---------vw--rwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 17 TLQFPSGQRYDFVVKDKEGKE---------VW--RWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp EEEESSS--EEEEEE-TT--E---------EE--ETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred EEEeCCCCEEEEEEECCCCCE---------EE--EecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 555555555555555442111 11 3677765333 559999999999999632 688853
No 76
>COG1470 Predicted membrane protein [Function unknown]
Probab=62.80 E-value=2e+02 Score=30.11 Aligned_cols=173 Identities=19% Similarity=0.291 Sum_probs=95.0
Q ss_pred EEEecCCE--EEEEEEeCCC--CCeeEEEccCCC-CCCCCCCCCCC-CCCCCCCCCceEEEEEeC-C---CceeeEEccC
Q 010700 60 INVTTNNN--VVVNVRNKLD--ESLLIHWSGIQQ-RRSSWQDGLLG-TNCPIPPKWNWTYQFQVK-D---QVGSFFYFPS 129 (503)
Q Consensus 60 i~~~~Gd~--v~v~v~N~l~--~~~siH~HG~~~-~~~~~~DG~~~-~q~~i~PG~~~~y~f~~~-~---~~Gt~wyH~H 129 (503)
+.+.++++ +.|++.|+-. ....+-.-|+.- ....+.+|--- +...+.||++.+....+. . .+|+|
T Consensus 278 ~~i~~~~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~gE~kdvtleV~ps~na~pG~Y----- 352 (513)
T COG1470 278 LEISPSTTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLKPGEEKDVTLEVYPSLNATPGTY----- 352 (513)
T ss_pred eEEccCCceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEecCCCceEEEEEEecCCCCCCCce-----
Confidence 55556665 6677788854 445666666531 11122344332 556689999998888872 1 25555
Q ss_pred chhhhhcCceeeEEEEeCCCCCCCCCCCCCceEEEEeeeeeCCHHHHHHHhhcCCCCCCCCeEEECCcCCCCCCCCCCCC
Q 010700 130 LHFQRASGGFGGFIINNRAIIPIPFDTPDGDITILIGDWYTRNHTALRKTLDAGKGLGMPDGVLINGKGPYQYNTTLVPD 209 (503)
Q Consensus 130 ~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~ 209 (503)
-..|+-.... ...++.++-+.---. .....-+-||.
T Consensus 353 ----------nv~I~A~s~s------~v~~e~~lki~~~g~----------------~~~~v~l~~g~------------ 388 (513)
T COG1470 353 ----------NVTITASSSS------GVTRELPLKIKNTGS----------------YNELVKLDNGP------------ 388 (513)
T ss_pred ----------eEEEEEeccc------cceeeeeEEEEeccc----------------cceeEEccCCc------------
Confidence 2223332211 123444444421100 00112222333
Q ss_pred CCCceeEEEeCC--cEEEEEEeEeCCC--CeeeEEEeCCcEEEEEecCCccceeeecEEEEcCCceEEEEEE--eCCC--
Q 010700 210 GIDYETIEVHPG--KTYRIRVHNVGIS--TSLNFRIQNHNLLLAETEGSYTVQQNYTSLDIHVGQSYSFLVT--MDQN-- 281 (503)
Q Consensus 210 ~~~~~~~~v~~G--~~~rlRliN~g~~--~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dvlv~--~~~~-- 281 (503)
..+++.+| +..+++|-|.|.. ....+.+++-.-|-+.+|+..+ + .|.||+|-.|-++ ++..
T Consensus 389 ----~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I-----~--sL~pge~~tV~ltI~vP~~a~ 457 (513)
T COG1470 389 ----YRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTI-----P--SLEPGESKTVSLTITVPEDAG 457 (513)
T ss_pred ----EEEEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECcccc-----c--ccCCCCcceEEEEEEcCCCCC
Confidence 55788888 5679999999975 3456677766667777776532 2 4566766555544 4432
Q ss_pred CCcceEEEEeee
Q 010700 282 ASTDYYIVASAR 293 (503)
Q Consensus 282 ~g~~y~i~~~~~ 293 (503)
+| +|.+.....
T Consensus 458 aG-dY~i~i~~k 468 (513)
T COG1470 458 AG-DYRITITAK 468 (513)
T ss_pred CC-cEEEEEEEe
Confidence 45 898866544
No 77
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=62.70 E-value=55 Score=24.90 Aligned_cols=65 Identities=22% Similarity=0.376 Sum_probs=30.6
Q ss_pred eCCcEE--EEEEeEeCCCC--eeeEEEeCCcEEEEEecCCcc--ceeeecEEEEcCCceEEEEEEeCC----CCCcceEE
Q 010700 219 HPGKTY--RIRVHNVGIST--SLNFRIQNHNLLLAETEGSYT--VQQNYTSLDIHVGQSYSFLVTMDQ----NASTDYYI 288 (503)
Q Consensus 219 ~~G~~~--rlRliN~g~~~--~~~~~i~gh~~~via~DG~~~--~p~~~d~v~l~pGeR~dvlv~~~~----~~g~~y~i 288 (503)
.+|+.. .+.+-|.+... ...+++. .-+|=.+ .+.... .|.||+...+-++..- .+| +|.|
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~-------~P~GW~~~~~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G-~y~v 71 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPLTNVSLSLS-------LPEGWTVSASPASVP--SLPPGESVTVTFTVTVPADAAPG-TYTV 71 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-BSS-EEEEE---------TTSE---EEEEE----B-TTSEEEEEEEEEE-TT--SE-EEEE
T ss_pred CCCCEEEEEEEEEECCCCceeeEEEEEe-------CCCCccccCCccccc--cCCCCCEEEEEEEEECCCCCCCc-eEEE
Confidence 466554 67788988652 2333333 2222221 233333 7899987777666542 245 8988
Q ss_pred EEeee
Q 010700 289 VASAR 293 (503)
Q Consensus 289 ~~~~~ 293 (503)
.+...
T Consensus 72 ~~~a~ 76 (78)
T PF10633_consen 72 TVTAR 76 (78)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 76543
No 78
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=61.65 E-value=36 Score=34.70 Aligned_cols=65 Identities=17% Similarity=0.233 Sum_probs=43.7
Q ss_pred CCceeEEEeCCcEEEEEEeEeCCCCeeeEEEeCCcEEEEEecCCccceeeecEEEEcCCceEEEEEEeCCCCCcceEEEE
Q 010700 211 IDYETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVA 290 (503)
Q Consensus 211 ~~~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dvlv~~~~~~g~~y~i~~ 290 (503)
|....++++.|+ ++|.+.|.+.. . +.|.++. |..+. ...=.|.||.+..+.+.+. +| .|.+.+
T Consensus 41 c~p~~~tVpAG~-~~f~V~N~~~~-~-------~Efe~~~--~~~vv---~e~EnIaPG~s~~l~~~L~--pG-tY~~~C 103 (375)
T PRK10378 41 CEPMTLTVNAGK-TQFIIQNHSQK-A-------LEWEILK--GVMVV---EERENIAPGFSQKMTANLQ--PG-EYDMTC 103 (375)
T ss_pred cccCceeeCCCC-EEEEEEeCCCC-c-------ceEEeec--ccccc---ccccccCCCCceEEEEecC--Cc-eEEeec
Confidence 456889999996 89999999876 2 3344442 22110 0112789998888877773 68 899987
Q ss_pred ee
Q 010700 291 SA 292 (503)
Q Consensus 291 ~~ 292 (503)
.+
T Consensus 104 ~~ 105 (375)
T PRK10378 104 GL 105 (375)
T ss_pred Cc
Confidence 43
No 79
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=59.73 E-value=13 Score=31.74 Aligned_cols=21 Identities=19% Similarity=0.460 Sum_probs=16.0
Q ss_pred CCCCCCCCCCCCCCCceEEEE
Q 010700 95 QDGLLGTNCPIPPKWNWTYQF 115 (503)
Q Consensus 95 ~DG~~~~q~~i~PG~~~~y~f 115 (503)
.+||-|.|..|.||++|.|.=
T Consensus 66 G~GVVG~qP~L~PGe~F~Y~S 86 (127)
T PRK05461 66 GEGVVGEQPVLAPGESFEYTS 86 (127)
T ss_pred CCceecCCceECCCCCeEEeC
Confidence 456666677799999998853
No 80
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=58.07 E-value=46 Score=27.30 Aligned_cols=71 Identities=14% Similarity=0.258 Sum_probs=45.3
Q ss_pred EEEEEeCCCCCeeEEEccCCCCCCCCCCCCCCCCCCCCCCCceEEEEEeCCCceeeEEccCchhhhhcCceeeEEEEeCC
Q 010700 69 VVNVRNKLDESLLIHWSGIQQRRSSWQDGLLGTNCPIPPKWNWTYQFQVKDQVGSFFYFPSLHFQRASGGFGGFIINNRA 148 (503)
Q Consensus 69 ~v~v~N~l~~~~siH~HG~~~~~~~~~DG~~~~q~~i~PG~~~~y~f~~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~ 148 (503)
.|+++|.|.....|..|=-. . ..| .+ ...+.||+++.++|.. +-.|+-.|.|+... .......-|.|....
T Consensus 2 ~V~I~N~L~~~~~L~vhC~S--~--d~D--lg-~~~l~~g~~~~~~F~~-~~~~~t~f~C~~~~-~~~~~~~~f~vy~~~ 72 (110)
T PF05938_consen 2 HVVIINNLGPGKILTVHCKS--K--DDD--LG-WHVLKPGQSYSFSFRD-NFFGTTLFWCHFRW-PGGKYHHSFDVYRSS 72 (110)
T ss_pred EEEEEECCCCCCeEEEEeeC--C--Ccc--CC-CEECCCCCEEEEEEec-CcCCceeEEEEEEE-CCccEEEEEEEEecc
Confidence 58999999766556665431 1 112 11 2348999999999986 45677778899776 111136666676543
No 81
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=55.72 E-value=56 Score=25.67 Aligned_cols=63 Identities=8% Similarity=0.083 Sum_probs=41.0
Q ss_pred CceEEEe---cCCEEEEEEEeCCCCCeeEEEccCCCCCCCCCCCCCCCCCCCCCCCceEEEEEeCCCceeeEEc
Q 010700 57 GPTINVT---TNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLGTNCPIPPKWNWTYQFQVKDQVGSFFYF 127 (503)
Q Consensus 57 gP~i~~~---~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DG~~~~q~~i~PG~~~~y~f~~~~~~Gt~wyH 127 (503)
.|.+.++ ....|+|+|.|....+..+....... ..+.+ .+..|+||++.+..|.+. ..--||.
T Consensus 8 ~~~v~~~~~~~~g~l~l~l~N~g~~~~~~~v~~~~y-----~~~~~-~~~~v~ag~~~~~~w~l~--~s~gwYD 73 (89)
T PF05506_consen 8 APEVTARYDPATGNLRLTLSNPGSAAVTFTVYDNAY-----GGGGP-WTYTVAAGQTVSLTWPLA--ASGGWYD 73 (89)
T ss_pred CCEEEEEEECCCCEEEEEEEeCCCCcEEEEEEeCCc-----CCCCC-EEEEECCCCEEEEEEeec--CCCCcEE
Confidence 4555554 23489999999988887777766311 11111 345689999999999883 3334553
No 82
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=54.82 E-value=46 Score=26.49 Aligned_cols=69 Identities=14% Similarity=0.169 Sum_probs=39.5
Q ss_pred EeCCcEEEEEEe--EeCCCCeeeEEEeCC--cEEEEEecCCccceeeecEE-EEcCCceEEEEEEeCCC--CCcceEEEE
Q 010700 218 VHPGKTYRIRVH--NVGISTSLNFRIQNH--NLLLAETEGSYTVQQNYTSL-DIHVGQSYSFLVTMDQN--ASTDYYIVA 290 (503)
Q Consensus 218 v~~G~~~rlRli--N~g~~~~~~~~i~gh--~~~via~DG~~~~p~~~d~v-~l~pGeR~dvlv~~~~~--~g~~y~i~~ 290 (503)
.+|||++.||++ +... . .-...+. .++|..-+|..+. .... .......++.-+..++. .| .|.|++
T Consensus 11 YrPGetV~~~~~~~~~~~-~--~~~~~~~~~~v~i~dp~g~~v~---~~~~~~~~~~G~~~~~~~lp~~~~~G-~y~i~~ 83 (99)
T PF01835_consen 11 YRPGETVHFRAIVRDLDN-D--FKPPANSPVTVTIKDPSGNEVF---RWSVNTTNENGIFSGSFQLPDDAPLG-TYTIRV 83 (99)
T ss_dssp E-TTSEEEEEEEEEEECT-T--CSCESSEEEEEEEEETTSEEEE---EEEEEETTCTTEEEEEEE--SS---E-EEEEEE
T ss_pred cCCCCEEEEEEEEecccc-c--cccccCCceEEEEECCCCCEEE---EEEeeeeCCCCEEEEEEECCCCCCCE-eEEEEE
Confidence 689999999998 6652 1 1112223 3555565665542 1222 34567788888887654 35 899988
Q ss_pred eee
Q 010700 291 SAR 293 (503)
Q Consensus 291 ~~~ 293 (503)
...
T Consensus 84 ~~~ 86 (99)
T PF01835_consen 84 KTD 86 (99)
T ss_dssp EET
T ss_pred EEc
Confidence 763
No 83
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=53.69 E-value=1.1e+02 Score=24.00 Aligned_cols=67 Identities=19% Similarity=0.316 Sum_probs=40.5
Q ss_pred EEeCCcEE--EEEEeEeCCCCeeeEEEeCCcEEEEEecCCccceeeecEE-EEcCCceEEEEEEeCC-CCCcceEEEEee
Q 010700 217 EVHPGKTY--RIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTSL-DIHVGQSYSFLVTMDQ-NASTDYYIVASA 292 (503)
Q Consensus 217 ~v~~G~~~--rlRliN~g~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v-~l~pGeR~dvlv~~~~-~~g~~y~i~~~~ 292 (503)
.+.+|+.+ .+.+-|.|....-.+.+. +-.||..+ ....| .|.||+...+-+.... .+| .|.+++..
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~~G-~~~i~~~i 83 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPSPG-SYTIRVVI 83 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS-C-EEEEEEEE
T ss_pred cccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCCCC-eEEEEEEE
Confidence 45667766 567899988744444333 33455443 33445 7899999999888764 346 88887765
Q ss_pred e
Q 010700 293 R 293 (503)
Q Consensus 293 ~ 293 (503)
.
T Consensus 84 D 84 (101)
T PF07705_consen 84 D 84 (101)
T ss_dssp S
T ss_pred e
Confidence 4
No 84
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=50.85 E-value=17 Score=36.54 Aligned_cols=77 Identities=22% Similarity=0.264 Sum_probs=0.0
Q ss_pred EEEEEEEeCCCCCee---EEEccCCCCCCC-------------CCCCCCC-CCCCCCCCCceEEEEEeCC----------
Q 010700 67 NVVVNVRNKLDESLL---IHWSGIQQRRSS-------------WQDGLLG-TNCPIPPKWNWTYQFQVKD---------- 119 (503)
Q Consensus 67 ~v~v~v~N~l~~~~s---iH~HG~~~~~~~-------------~~DG~~~-~q~~i~PG~~~~y~f~~~~---------- 119 (503)
++.++|+|+.+.+.. .-.-|+++.... +.+|... ...||+|||+.+.+.++.|
T Consensus 266 ~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~~pI~PGETrtl~V~a~dA~WeveRL~~ 345 (381)
T PF04744_consen 266 TMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDNSPIAPGETRTLTVEAQDAAWEVERLSD 345 (381)
T ss_dssp EEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES--S-B-TT-EEEEEEEEE-HHHHHTTGGG
T ss_pred EEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCCCCcCCCceEEEEEEeehhHHHHhhhhh
Q ss_pred --------CceeeEEccCchhhhhcCceeeEE
Q 010700 120 --------QVGSFFYFPSLHFQRASGGFGGFI 143 (503)
Q Consensus 120 --------~~Gt~wyH~H~~~q~~~Gl~G~li 143 (503)
-.|..++.+-.+..+..-+.|++|
T Consensus 346 l~~D~dsrfgGLLff~d~~G~r~i~~I~gpvI 377 (381)
T PF04744_consen 346 LIYDPDSRFGGLLFFFDASGNRYISEIAGPVI 377 (381)
T ss_dssp GGGSSS-EEEEEEEEEETTS-EEEEEEEEE-E
T ss_pred hhcCcccceeEEEEEEcCCCCEEEEeccCccc
No 85
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=49.74 E-value=69 Score=27.34 Aligned_cols=63 Identities=14% Similarity=0.188 Sum_probs=40.1
Q ss_pred ceeEEEeCCcEEEEEEeEeCCCCeeeEEEeCCcEEEEEecCCccceeeecEEEEcCCceEEEEEEeCCCCCcceEEEEee
Q 010700 213 YETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASA 292 (503)
Q Consensus 213 ~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dvlv~~~~~~g~~y~i~~~~ 292 (503)
+..+++++|++|+ ++|.+.. .|++...+.. .+...+.+.-.+++.+.+-|+. +| .|...+.+
T Consensus 53 PA~v~v~pGDTVt--w~~~d~~-~Hnv~~~~~~-----------~~~g~~~~~~~~~~s~~~Tfe~---~G-~Y~Y~C~P 114 (128)
T COG3794 53 PAEVTVKPGDTVT--WVNTDSV-GHNVTAVGGM-----------DPEGSGTLKAGINESFTHTFET---PG-EYTYYCTP 114 (128)
T ss_pred CcEEEECCCCEEE--EEECCCC-CceEEEeCCC-----------CcccccccccCCCcceEEEecc---cc-eEEEEecc
Confidence 4789999999875 5676654 4444433222 2223445666677888877755 57 88887766
Q ss_pred e
Q 010700 293 R 293 (503)
Q Consensus 293 ~ 293 (503)
.
T Consensus 115 H 115 (128)
T COG3794 115 H 115 (128)
T ss_pred C
Confidence 5
No 86
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=49.16 E-value=1.1e+02 Score=26.05 Aligned_cols=64 Identities=11% Similarity=0.185 Sum_probs=43.3
Q ss_pred eEEEeCCcEEEEEEeEeCCCCeeeEEEeCCcEEEEEecCCcc-------ceeeecEEEEcCCceEEEEEEeCCCCC
Q 010700 215 TIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYT-------VQQNYTSLDIHVGQSYSFLVTMDQNAS 283 (503)
Q Consensus 215 ~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~via~DG~~~-------~p~~~d~v~l~pGeR~dvlv~~~~~~g 283 (503)
.|++.....|+|++-..+ ...|.|+|. .|+..++..- ......++.|..|++|+|-|...+..+
T Consensus 53 ~~~~~~~G~y~f~~~~~d---~~~l~idg~--~vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~~~~ 123 (145)
T PF07691_consen 53 YFKPPETGTYTFSLTSDD---GARLWIDGK--LVIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFNRGG 123 (145)
T ss_dssp EEEESSSEEEEEEEEESS---EEEEEETTE--EEEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEECSC
T ss_pred EEecccCceEEEEEEecc---cEEEEECCE--EEEcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEECCC
Confidence 356666678999998433 577889887 4566666443 345567889999999999998765433
No 87
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=49.15 E-value=57 Score=23.99 Aligned_cols=46 Identities=24% Similarity=0.456 Sum_probs=30.0
Q ss_pred EEEeCCcEEEEEEeEeCCCCeeeEEEeCCcEEEEEecCCccceeeecEEEEcCCceEE
Q 010700 216 IEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTSLDIHVGQSYS 273 (503)
Q Consensus 216 ~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~d 273 (503)
+++.+|+..+||.-. ...+.+.+-.++|.. +|. .+-+.|.+||++.
T Consensus 2 ~~L~~g~~~~lr~~~-----~~~l~v~~G~vWlT~-~g~------~~D~~L~~G~~l~ 47 (63)
T PF11142_consen 2 FELAPGETLSLRAAA-----GQRLRVESGRVWLTR-EGD------PDDYWLQAGDSLR 47 (63)
T ss_pred EEeCCCceEEeEcCC-----CcEEEEccccEEEEC-CCC------CCCEEECCCCEEE
Confidence 577899999999654 223677777787764 442 2335566676665
No 88
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=48.33 E-value=9.7 Score=30.34 Aligned_cols=23 Identities=17% Similarity=0.407 Sum_probs=14.3
Q ss_pred CCCCCCCCCCCCCCCceEEEEEe
Q 010700 95 QDGLLGTNCPIPPKWNWTYQFQV 117 (503)
Q Consensus 95 ~DG~~~~q~~i~PG~~~~y~f~~ 117 (503)
.+||-|.+.-|.||++|+|.=-.
T Consensus 49 G~GVVG~~P~L~pGe~f~Y~S~~ 71 (90)
T PF04379_consen 49 GEGVVGQQPVLAPGESFEYTSGC 71 (90)
T ss_dssp EESBTTB--EE-TTEEEEEEEEE
T ss_pred CCceEccCceECCCCcEEEcCCC
Confidence 45665566779999998886544
No 89
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=47.40 E-value=74 Score=29.39 Aligned_cols=60 Identities=18% Similarity=0.278 Sum_probs=43.1
Q ss_pred eeEEEeCCcEEEEEEeEeCCCCeeeEEEeCCcEEEEEecCCccceeeecEEEEcCCceEEEEEEeCCCCCcceEEEEeee
Q 010700 214 ETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASAR 293 (503)
Q Consensus 214 ~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dvlv~~~~~~g~~y~i~~~~~ 293 (503)
..+.++.|+.+||++-+... .|.|.+.+... ....-||..-.+.+++++ +| .|..+++-.
T Consensus 117 ~~l~vp~g~~v~~~~ts~DV--~Hsf~ip~~~~----------------k~da~PG~~~~~~~~~~~-~G-~y~~~c~e~ 176 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKDV--IHSFWVPELGG----------------KIDAIPGQYNALWFNADE-PG-VYYGYCAEL 176 (201)
T ss_pred CEEEEEcCCEEEEEEEeCch--hhcccccccCc----------------eEEecCCcEEEEEEEeCC-CE-EEEEEehhh
Confidence 67899999999999877543 45555554432 234568888888888885 57 898887653
No 90
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=44.89 E-value=1.2e+02 Score=27.82 Aligned_cols=76 Identities=13% Similarity=-0.088 Sum_probs=48.9
Q ss_pred eEEEecCCEEEEEEEeCCCCCeeEEEccCCCCCCCCCCCCCCCCCCCCCCCceEEEEEeCCCceeeEEccCch-hhhhcC
Q 010700 59 TINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLGTNCPIPPKWNWTYQFQVKDQVGSFFYFPSLH-FQRASG 137 (503)
Q Consensus 59 ~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DG~~~~q~~i~PG~~~~y~f~~~~~~Gt~wyH~H~~-~q~~~G 137 (503)
.+.+..|..|+++++-. +.-++....++.. .+| .-||..-...|++ +++|+|.--|.-- ......
T Consensus 117 ~l~lp~g~~v~~~ltS~-DViHsf~vp~l~~----k~d--------~~PG~~~~~~~~~-~~~G~y~g~C~e~CG~~H~~ 182 (194)
T MTH00047 117 PLRLVYGVPYHLLVTSS-DVIHSFSVPDLNL----KMD--------AIPGRINHLFFCP-DRHGVFVGYCSELCGVGHSY 182 (194)
T ss_pred eEEEeCCCEEEeeeecC-ccccceeccccCc----eee--------cCCCceEEEEEEc-CCCEEEEEEeehhhCcCccc
Confidence 47888888888887755 2333333333211 122 4589988888887 6899999988732 222344
Q ss_pred ceeeEEEEeCC
Q 010700 138 GFGGFIINNRA 148 (503)
Q Consensus 138 l~G~liV~~~~ 148 (503)
|.+.+.|.+++
T Consensus 183 M~~~v~v~~~~ 193 (194)
T MTH00047 183 MPIVIEVVDVD 193 (194)
T ss_pred CcEEEEEEcCC
Confidence 77888877653
No 91
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=44.62 E-value=82 Score=29.80 Aligned_cols=77 Identities=13% Similarity=-0.096 Sum_probs=49.9
Q ss_pred CceEEEecCCEEEEEEEeCCCCCeeEEEccCCCCCCCCCCCCCCCCCCCCCCCceEEEEEeCCCceeeEEccCch-hhhh
Q 010700 57 GPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLGTNCPIPPKWNWTYQFQVKDQVGSFFYFPSLH-FQRA 135 (503)
Q Consensus 57 gP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DG~~~~q~~i~PG~~~~y~f~~~~~~Gt~wyH~H~~-~q~~ 135 (503)
...|.+..|..|++.+++. +.- |+.... .-| -+.-.-||..-...|++ +++|+|+-.|..- ....
T Consensus 139 ~n~l~lP~~~~v~~~~ts~-DVi-----Hsf~ip----~~~---~k~d~~Pg~~~~~~~~~-~~~g~y~~~C~e~CG~~H 204 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSA-DVI-----HSWTVP----SLG---VKVDAIPGRLNQLSFEP-KRPGVFYGQCSEICGANH 204 (228)
T ss_pred CCeEEEeeCcEEEEEEEcC-ccc-----cceecc----ccC---ceeECCCCcceeEEEEe-CCCEEEEEECccccCcCc
Confidence 4679999999999999985 222 333221 111 11224589988888988 6899999888731 2223
Q ss_pred cCceeeEEEEeC
Q 010700 136 SGGFGGFIINNR 147 (503)
Q Consensus 136 ~Gl~G~liV~~~ 147 (503)
..|.+.++|.++
T Consensus 205 ~~M~~~v~v~~~ 216 (228)
T MTH00140 205 SFMPIVVEAVPL 216 (228)
T ss_pred CCCeEEEEEECH
Confidence 346777777664
No 92
>COG4633 Plastocyanin domain containing protein [General function prediction only]
Probab=44.12 E-value=1.3e+02 Score=28.11 Aligned_cols=90 Identities=13% Similarity=0.168 Sum_probs=64.8
Q ss_pred eCCCCceeEEEEEcCCCCCceEEEecCCEEEEEEEeCCCCCe-----eEEEccCCCCCCCCCCCCCCCCCCCCCCCceEE
Q 010700 39 ASPLGVPQQVIAINGKFPGPTINVTTNNNVVVNVRNKLDESL-----LIHWSGIQQRRSSWQDGLLGTNCPIPPKWNWTY 113 (503)
Q Consensus 39 ~~~dG~~~~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~-----siH~HG~~~~~~~~~DG~~~~q~~i~PG~~~~y 113 (503)
.+++|.+---+++.|.+---.|.|..|-.+++++.=+.+.+. +--+|+. ..++-+|-...
T Consensus 78 ~a~~g~qeIsitv~gGy~p~~IvV~~~v~~rl~f~Rkdpspcle~i~~pdfgia---------------anlpl~q~ssI 142 (272)
T COG4633 78 FAPNGIQEISITVDGGYIPSRIVVVDGVPVRLTFKRKDPSPCLESIMSPDFGIA---------------ANLPLNQVSSI 142 (272)
T ss_pred cccCCceEEEEEEeCCccceeEEEecCcceEeeeccCCCCcchhhccccccccc---------------ccCCcCceeEE
Confidence 355665555567776665569999999999999998866442 3344443 22566888888
Q ss_pred EEEeCCCceeeEEccCchhhhhcCceeeEEEEeCCC
Q 010700 114 QFQVKDQVGSFFYFPSLHFQRASGGFGGFIINNRAI 149 (503)
Q Consensus 114 ~f~~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~ 149 (503)
+|+- +..|+|-+-|-.. + |.|.++|++-..
T Consensus 143 e~T~-~s~ge~af~cgmn----m-~~G~~~vet~~~ 172 (272)
T COG4633 143 EFTP-ISKGEYAFLCGMN----M-FRGNIQVETLTG 172 (272)
T ss_pred Eecc-ccccchhhhcchh----h-ccCeeEEEecCC
Confidence 8886 6899999988754 2 789999998654
No 93
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=42.89 E-value=18 Score=29.29 Aligned_cols=31 Identities=19% Similarity=0.300 Sum_probs=26.7
Q ss_pred EEEcCCCCCceEEEecCCEEEEEEEeCCCCC
Q 010700 49 IAINGKFPGPTINVTTNNNVVVNVRNKLDES 79 (503)
Q Consensus 49 ~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~ 79 (503)
+.+||+.--|-=.|+.||.|+|++.|..-..
T Consensus 36 V~vNG~~aKpS~~VK~GD~l~i~~~~~~~~v 66 (100)
T COG1188 36 VKVNGQRAKPSKEVKVGDILTIRFGNKEFTV 66 (100)
T ss_pred EEECCEEcccccccCCCCEEEEEeCCcEEEE
Confidence 5799998889999999999999999985433
No 94
>PRK13202 ureB urease subunit beta; Reviewed
Probab=42.73 E-value=61 Score=26.33 Aligned_cols=63 Identities=17% Similarity=0.113 Sum_probs=41.5
Q ss_pred eEEEecC--CEEEEEEEeCCCCCe--eEEEccCCCCCCCCCC-----C----CC-CCCCCCCCCCceEEEEEeCCCcee
Q 010700 59 TINVTTN--NNVVVNVRNKLDESL--LIHWSGIQQRRSSWQD-----G----LL-GTNCPIPPKWNWTYQFQVKDQVGS 123 (503)
Q Consensus 59 ~i~~~~G--d~v~v~v~N~l~~~~--siH~HG~~~~~~~~~D-----G----~~-~~q~~i~PG~~~~y~f~~~~~~Gt 123 (503)
.|++++| +++.|+|+|..++|. .-|+|=.+....-..| | .| +|..-.+||++.+.+... -.|.
T Consensus 12 ~I~ln~grr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~--~gG~ 88 (104)
T PRK13202 12 DIEMNAAALSRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLVP--LGGR 88 (104)
T ss_pred CEEeCCCCCceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEEE--ccCC
Confidence 4899999 699999999998775 4577755433211122 1 23 255557899999887764 3454
No 95
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=42.21 E-value=2e+02 Score=23.78 Aligned_cols=21 Identities=10% Similarity=0.294 Sum_probs=12.6
Q ss_pred EEEEeEeCCC-CeeeEEEeCCc
Q 010700 225 RIRVHNVGIS-TSLNFRIQNHN 245 (503)
Q Consensus 225 rlRliN~g~~-~~~~~~i~gh~ 245 (503)
++|++|++.. ....+.++|..
T Consensus 3 ~Vr~~hasp~~~~vdv~~dg~~ 24 (122)
T PF14344_consen 3 RVRFIHASPDAPAVDVYVDGTK 24 (122)
T ss_pred EEEEEEcCCCCccEEEEECCEE
Confidence 5677777664 44556665443
No 96
>PF14481 Fimbrial_PilY2: Type 4 fimbrial biogenesis protein PilY2; PDB: 3TDQ_A.
Probab=40.32 E-value=32 Score=27.90 Aligned_cols=82 Identities=20% Similarity=0.042 Sum_probs=26.0
Q ss_pred CccchhhHHHHHHHHHHHhh---hhcCCceEEEEEEEEEEE-----eCCCCceeEE---EEEcCCCCCceE-EEecCCEE
Q 010700 1 MALCRGLSLLAIHIALLASL---CSAADLFVYFDFEVSYIT-----ASPLGVPQQV---IAINGKFPGPTI-NVTTNNNV 68 (503)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~-----~~~dG~~~~~---~~~Ng~~pgP~i-~~~~Gd~v 68 (503)
|++++-|+++ +.+.-|+|. .++...+-+-.=.|.+.. +.+||+.... ..=| -||.| .+++|..|
T Consensus 1 Mk~L~~La~~-L~alaLa~p~~~~a~~~~TFE~~GvV~~v~~e~~lv~IDgq~YrLPn~v~q~---~~p~ifqvrpGsvV 76 (118)
T PF14481_consen 1 MKSLRLLATA-LFALALACPGLAWAAEPHTFEGAGVVQEVQPEKNLVDIDGQHYRLPNRVAQQ---GGPVIFQVRPGSVV 76 (118)
T ss_dssp ---------------------------TTEEEEEEEEEEEEGGGTEEEETTEEEE--TT-EET---TEEGGGT--TT-EE
T ss_pred CcchHHhhhh-hhhhhhccccceeccCcceecccceEEEeecccceEEEcCcEEeCCchhhhc---CCceEEEEcCCcEE
Confidence 5666666544 222222222 222233333333444443 4567765543 2223 37887 99999986
Q ss_pred EEEEEeC--CCCCeeEEEcc
Q 010700 69 VVNVRNK--LDESLLIHWSG 86 (503)
Q Consensus 69 ~v~v~N~--l~~~~siH~HG 86 (503)
-..=.=. ++.-.+|.+|-
T Consensus 77 S~sGsvss~~p~I~si~i~r 96 (118)
T PF14481_consen 77 SFSGSVSSPLPTITSIYILR 96 (118)
T ss_dssp EEEEE--SSS-EEEEEEE-H
T ss_pred EEeeeecCCCcccceEEEEe
Confidence 5532222 23334555553
No 97
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=36.00 E-value=1.6e+02 Score=21.66 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=23.1
Q ss_pred eeEEEeCCcEEEEEEeEeCCCCeeeEEEeCCcEEEEEecCCcc
Q 010700 214 ETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYT 256 (503)
Q Consensus 214 ~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~via~DG~~~ 256 (503)
..++++.|+++++.+-+.+. ...+.|...+|..+
T Consensus 5 y~f~v~ag~~l~i~l~~~~~---------d~dl~l~~~~g~~~ 38 (70)
T PF04151_consen 5 YSFTVPAGGTLTIDLSGGSG---------DADLYLYDSNGNSL 38 (70)
T ss_dssp EEEEESTTEEEEEEECETTS---------SEEEEEEETTSSSC
T ss_pred EEEEEcCCCEEEEEEcCCCC---------CeEEEEEcCCCCch
Confidence 67899999999988866554 22355666665443
No 98
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=35.27 E-value=1.5e+02 Score=28.47 Aligned_cols=60 Identities=13% Similarity=0.228 Sum_probs=44.8
Q ss_pred eeEEEeCCcEEEEEEeEeCCCCeeeEEEeCCcEEEEEecCCccceeeecEEEEcCCceEEEEEEeCCCCCcceEEEEeee
Q 010700 214 ETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASAR 293 (503)
Q Consensus 214 ~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dvlv~~~~~~g~~y~i~~~~~ 293 (503)
..+.+..|++|+|++-... -.|.|.+.+-..+ +..-||...+..+++++ +| .|..+++..
T Consensus 137 n~l~lPv~~~V~f~ltS~D--ViHsF~IP~l~~k----------------~d~iPG~~~~~~~~~~~-~G-~Y~g~Cae~ 196 (247)
T COG1622 137 NELVLPVGRPVRFKLTSAD--VIHSFWIPQLGGK----------------IDAIPGMTTELWLTANK-PG-TYRGICAEY 196 (247)
T ss_pred ceEEEeCCCeEEEEEEech--hceeEEecCCCce----------------eeecCCceEEEEEecCC-Ce-EEEEEcHhh
Confidence 6789999999999996654 3667777666444 34457888888898885 57 899887654
No 99
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=34.11 E-value=46 Score=29.07 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=22.6
Q ss_pred CCCCCCCCceEEEEEe---CCCceeeEEccC
Q 010700 102 NCPIPPKWNWTYQFQV---KDQVGSFFYFPS 129 (503)
Q Consensus 102 q~~i~PG~~~~y~f~~---~~~~Gt~wyH~H 129 (503)
..||+||++++..+.. |...|+|.|++-
T Consensus 96 ~~PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~ 126 (146)
T PF10989_consen 96 DEPVPPGTTVTVVLSPVRNPRSGGTYQFNVT 126 (146)
T ss_pred CCCCCCCCEEEEEEEeeeCCCCCCeEEEEEE
Confidence 5789999999999843 445699999875
No 100
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=33.35 E-value=2.9e+02 Score=23.14 Aligned_cols=63 Identities=11% Similarity=0.216 Sum_probs=37.0
Q ss_pred EEEeCCcEEEEEEeEeCCCCeeeEEEeCCcEEEEEecCCcc-ceeeecEEEEcCCceEEEEEEeCCCCC
Q 010700 216 IEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYT-VQQNYTSLDIHVGQSYSFLVTMDQNAS 283 (503)
Q Consensus 216 ~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~via~DG~~~-~p~~~d~v~l~pGeR~dvlv~~~~~~g 283 (503)
+++.....|+|.+... ....+.|+|. .|+..++..- .......+.|..|++|.+.|...+..+
T Consensus 52 i~~~~~G~y~f~~~~~---~~~~l~Idg~--~vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~~~~ 115 (136)
T smart00758 52 LKPPEDGEYTFSITSD---DGARLWIDGK--LVIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFEAGT 115 (136)
T ss_pred EECCCCccEEEEEEcC---CcEEEEECCc--EEEcCCccCCCccccceeEEEeCCcEEEEEEEEEeCCC
Confidence 4444445688888543 3567788876 4454443221 122344678888888888887654433
No 101
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=32.72 E-value=2e+02 Score=23.68 Aligned_cols=48 Identities=10% Similarity=0.200 Sum_probs=28.2
Q ss_pred EEEEEEeEeCCC-CeeeEEEeCC-cEEEEEecCCccceeeecEEEEcCCceEEEEEEeC
Q 010700 223 TYRIRVHNVGIS-TSLNFRIQNH-NLLLAETEGSYTVQQNYTSLDIHVGQSYSFLVTMD 279 (503)
Q Consensus 223 ~~rlRliN~g~~-~~~~~~i~gh-~~~via~DG~~~~p~~~d~v~l~pGeR~dvlv~~~ 279 (503)
.|+++|+|-+.. ..+.+.++|. .+++.. ....+.|.||+..++-|...
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~---------~~~~i~v~~g~~~~~~v~v~ 83 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQG---------PENTITVPPGETREVPVFVT 83 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE-E---------S--EEEE-TT-EEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEEC---------CCcceEECCCCEEEEEEEEE
Confidence 589999999886 4466667764 233311 24678899999888777653
No 102
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=32.55 E-value=1.2e+02 Score=27.43 Aligned_cols=23 Identities=17% Similarity=-0.021 Sum_probs=18.9
Q ss_pred EEEecCCCcEEEEEEeCCCCCCC
Q 010700 430 SVINGTYRGFMEVILQNNDTKMH 452 (503)
Q Consensus 430 ~~~~~~~g~~vdivi~N~~~~~H 452 (503)
-.+.+|.|-.|.+++.|.+..+|
T Consensus 85 mtIyiPaGw~V~V~f~N~e~~pH 107 (195)
T TIGR03094 85 MTIYLPAGWNVYVTFTNYESLPH 107 (195)
T ss_pred eEEEEeCCCEEEEEEEcCCCCCc
Confidence 45667899999999999986664
No 103
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=32.19 E-value=1.2e+02 Score=24.59 Aligned_cols=59 Identities=22% Similarity=0.274 Sum_probs=39.5
Q ss_pred eEEEecC-CEEEEEEEeCCCCCe--eEEEccCCCCCCCCCC-----C----CC-CCCCCCCCCCceEEEEEe
Q 010700 59 TINVTTN-NNVVVNVRNKLDESL--LIHWSGIQQRRSSWQD-----G----LL-GTNCPIPPKWNWTYQFQV 117 (503)
Q Consensus 59 ~i~~~~G-d~v~v~v~N~l~~~~--siH~HG~~~~~~~~~D-----G----~~-~~q~~i~PG~~~~y~f~~ 117 (503)
.|++++| +++.|.|+|..++|. .-|+|=.+....-..| | .| +|..-.+||++.+.+...
T Consensus 12 ~I~ln~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~ 83 (101)
T TIGR00192 12 DITINEGRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELVA 83 (101)
T ss_pred CEEeCCCCcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEEE
Confidence 4888888 899999999998875 4577755443211122 1 23 255557899999887764
No 104
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=32.12 E-value=95 Score=24.69 Aligned_cols=49 Identities=16% Similarity=0.377 Sum_probs=26.3
Q ss_pred EEEEEEeEeCCCCeeeEEEeCCcEEEEEecCCccc---e-eeecEEEEcCCceEEE
Q 010700 223 TYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTV---Q-QNYTSLDIHVGQSYSF 274 (503)
Q Consensus 223 ~~rlRliN~g~~~~~~~~i~gh~~~via~DG~~~~---p-~~~d~v~l~pGeR~dv 274 (503)
.|++||-|.+.. ++.|-...+.+...||...+ + ..-..=.|.|||.+..
T Consensus 15 ~Y~I~I~N~~~~---~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y 67 (90)
T PF04379_consen 15 AYRIRIENHSDE---SVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEY 67 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEE
T ss_pred EEEEEEEECCCC---CEEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEE
Confidence 478999998876 45555666666666664321 1 1123556788886543
No 105
>PRK13203 ureB urease subunit beta; Reviewed
Probab=31.63 E-value=1.2e+02 Score=24.61 Aligned_cols=64 Identities=19% Similarity=0.226 Sum_probs=41.5
Q ss_pred eEEEecC-CEEEEEEEeCCCCCe--eEEEccCCCCCCCCCC-----C----CC-CCCCCCCCCCceEEEEEeCCCceee
Q 010700 59 TINVTTN-NNVVVNVRNKLDESL--LIHWSGIQQRRSSWQD-----G----LL-GTNCPIPPKWNWTYQFQVKDQVGSF 124 (503)
Q Consensus 59 ~i~~~~G-d~v~v~v~N~l~~~~--siH~HG~~~~~~~~~D-----G----~~-~~q~~i~PG~~~~y~f~~~~~~Gt~ 124 (503)
.|++++| +++.|+|+|..++|. .-|+|=.+....-..| | .| ||..-.+||++.+.+... -.|.-
T Consensus 12 ~I~ln~gr~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~--~gG~r 88 (102)
T PRK13203 12 EIELNAGRETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELVP--LAGAR 88 (102)
T ss_pred CEEeCCCCCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEEE--ccCce
Confidence 4788888 899999999998875 4577754433211122 1 23 255557899998887764 34543
No 106
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=31.40 E-value=1.9e+02 Score=24.24 Aligned_cols=61 Identities=10% Similarity=0.175 Sum_probs=34.6
Q ss_pred ceEEEecCCEEEEEEEeCCC---CCeeEEEcc----CCCC-CCCCCCCCCCCCCCCCCCCceEEEEEeC
Q 010700 58 PTINVTTNNNVVVNVRNKLD---ESLLIHWSG----IQQR-RSSWQDGLLGTNCPIPPKWNWTYQFQVK 118 (503)
Q Consensus 58 P~i~~~~Gd~v~v~v~N~l~---~~~siH~HG----~~~~-~~~~~DG~~~~q~~i~PG~~~~y~f~~~ 118 (503)
..=.++.|..+.+.+.=..+ ...+...|| +... .-+..||=-...|||..|+.++|.+.++
T Consensus 20 ~pC~l~rG~~~~~~~~F~~~~~s~~l~~~v~a~~~gv~iP~p~~~~daC~~l~CPl~~G~~~~y~~~~~ 88 (120)
T cd00918 20 DYCVIHRGKPLTLEAKFTANQDTAKAKIKITASIDGLEIDVPGIETDGCKYVKCPIKKGQHYDIKYTWN 88 (120)
T ss_pred CCCEEECCCeEEEEEEEECCCccceEEEEEEEEECCEEcCCCCCCCCCcccEeCCCcCCcEEEEEEeee
Confidence 34566778777776653222 223344444 3221 1123444211479999999999999874
No 107
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=31.10 E-value=1.3e+02 Score=25.12 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=16.3
Q ss_pred ceeEEEeCCcEEEEEEeEe
Q 010700 213 YETIEVHPGKTYRIRVHNV 231 (503)
Q Consensus 213 ~~~~~v~~G~~~rlRliN~ 231 (503)
+..+++++|++|+|...+.
T Consensus 14 P~~v~V~~GdTV~f~n~d~ 32 (116)
T TIGR02375 14 PAYIRAAPGDTVTFVPTDK 32 (116)
T ss_pred CCEEEECCCCEEEEEECCC
Confidence 4789999999999888774
No 108
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=30.32 E-value=2.1e+02 Score=23.91 Aligned_cols=63 Identities=16% Similarity=0.123 Sum_probs=37.3
Q ss_pred ceeEEEeCCcEEEEEEeEeCCCCeeeEEEeCCcEEEEEecCCccceeeecEEEEcCCceEEEEEEeCCCCCcceEEEEee
Q 010700 213 YETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASA 292 (503)
Q Consensus 213 ~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dvlv~~~~~~g~~y~i~~~~ 292 (503)
+..+++++|++|+|.--. ....|.+... ++... ....+.+.+|+++++-|. .+| .|...+..
T Consensus 41 P~~ltV~~GdTVtw~~~~--d~~~HnV~s~---------~~~~f---~s~~~~~~~G~t~s~Tf~---~~G-~Y~Y~C~p 102 (115)
T TIGR03102 41 PPAIRVDPGTTVVWEWTG--EGGGHNVVSD---------GDGDL---DESERVSEEGTTYEHTFE---EPG-IYLYVCVP 102 (115)
T ss_pred CCEEEECCCCEEEEEECC--CCCCEEEEEC---------CCCCc---cccccccCCCCEEEEEec---CCc-EEEEEccC
Confidence 478999999998865432 2223333322 22211 122345678999998884 357 78777654
Q ss_pred e
Q 010700 293 R 293 (503)
Q Consensus 293 ~ 293 (503)
.
T Consensus 103 H 103 (115)
T TIGR03102 103 H 103 (115)
T ss_pred C
Confidence 3
No 109
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=30.02 E-value=1.2e+02 Score=25.84 Aligned_cols=48 Identities=17% Similarity=0.335 Sum_probs=30.3
Q ss_pred EEEEEEeEeCCCCeeeEEEeCCcEEEEEecCCccc---e-eeecEEEEcCCceEE
Q 010700 223 TYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTV---Q-QNYTSLDIHVGQSYS 273 (503)
Q Consensus 223 ~~rlRliN~g~~~~~~~~i~gh~~~via~DG~~~~---p-~~~d~v~l~pGeR~d 273 (503)
.|++||.|.+.. .+.|-...+.+...||...+ + ..-..=.|.|||.+.
T Consensus 32 ~Y~ItI~N~~~~---~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~ 83 (127)
T PRK05461 32 AYTITIENLGRV---PVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFE 83 (127)
T ss_pred EEEEEEEECCCC---CEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeE
Confidence 378999997754 56677777777777775421 1 122344677777554
No 110
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=28.70 E-value=1.6e+02 Score=23.95 Aligned_cols=63 Identities=19% Similarity=0.220 Sum_probs=40.8
Q ss_pred eEEEecC-CEEEEEEEeCCCCCe--eEEEccCCCCCCCCCC-----C----CC-CCCCCCCCCCceEEEEEeCCCcee
Q 010700 59 TINVTTN-NNVVVNVRNKLDESL--LIHWSGIQQRRSSWQD-----G----LL-GTNCPIPPKWNWTYQFQVKDQVGS 123 (503)
Q Consensus 59 ~i~~~~G-d~v~v~v~N~l~~~~--siH~HG~~~~~~~~~D-----G----~~-~~q~~i~PG~~~~y~f~~~~~~Gt 123 (503)
.|++++| ++++|+|+|..+++. .-|+|=.+....-..| | .| ||..-.+||++.+.+... -.|.
T Consensus 12 ~I~lN~gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~--~~G~ 87 (101)
T cd00407 12 DIELNAGREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELVP--IGGK 87 (101)
T ss_pred CeEeCCCCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEEE--ccCc
Confidence 4788888 789999999998775 4577755443221222 1 22 255557889988887764 3454
No 111
>PF14478 DUF4430: Domain of unknown function (DUF4430); PDB: 3U7Z_B 2BB5_A.
Probab=28.40 E-value=44 Score=24.80 Aligned_cols=27 Identities=7% Similarity=0.124 Sum_probs=18.3
Q ss_pred ceeEEEEEcCCCC---CceEEEecCCEEEE
Q 010700 44 VPQQVIAINGKFP---GPTINVTTNNNVVV 70 (503)
Q Consensus 44 ~~~~~~~~Ng~~p---gP~i~~~~Gd~v~v 70 (503)
....++.+||+++ .-.+.++.||.|+.
T Consensus 38 ~~~W~~~vNG~~~~~ga~~~~l~~GD~i~~ 67 (68)
T PF14478_consen 38 GSYWMYYVNGESANVGAGSYKLKDGDKITW 67 (68)
T ss_dssp TEEEEEEETTEE-SS-CCC-B--TTEEEEE
T ss_pred CceeEEEECCEEhhcCcceeEeCCCCEEEe
Confidence 3578899999987 34889999999875
No 112
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=28.34 E-value=47 Score=25.86 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=23.7
Q ss_pred eeEEEEEcCCCCCceEEEecCCEEEEE
Q 010700 45 PQQVIAINGKFPGPTINVTTNNNVVVN 71 (503)
Q Consensus 45 ~~~~~~~Ng~~pgP~i~~~~Gd~v~v~ 71 (503)
+...+.+||+.-++.-+++.||+|.|.
T Consensus 48 EV~~i~vNG~~v~~~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 48 EVGLILVNGRPVDFDYRLKDGDRVAVY 74 (81)
T ss_pred HeEEEEECCEECCCcccCCCCCEEEEE
Confidence 456789999999999999999998874
No 113
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=27.94 E-value=1.9e+02 Score=22.23 Aligned_cols=63 Identities=17% Similarity=0.144 Sum_probs=37.7
Q ss_pred ceeEEEeCCcEEEEEEeEeCCCCeeeEEEeCCcEEEEEecCCccceeeecEEEEcCCceEEEEEEeCCCCCcceEEEEee
Q 010700 213 YETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASA 292 (503)
Q Consensus 213 ~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dvlv~~~~~~g~~y~i~~~~ 292 (503)
++.+++++|+++.| .|.... .|.+.+.... ++. .......+.+|+.+.+.+ + .+| .|...+..
T Consensus 10 P~~i~v~~GdtVt~--~N~d~~-~Hnv~~~~g~------~~~----~~~~~~~~~~g~~~~~tf--~-~~G-~y~y~C~~ 72 (83)
T TIGR02657 10 TPELHVKVGDTVTW--INREAM-PHNVHFVAGV------LGE----AALKGPMMKKEQAYSLTF--T-EAG-TYDYHCTP 72 (83)
T ss_pred CCEEEECCCCEEEE--EECCCC-CccEEecCCC------Ccc----ccccccccCCCCEEEEEC--C-CCE-EEEEEcCC
Confidence 47899999999887 565543 4555443211 111 111233468899998655 4 357 78776654
No 114
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=24.99 E-value=2.9e+02 Score=25.37 Aligned_cols=59 Identities=17% Similarity=0.249 Sum_probs=41.4
Q ss_pred eeEEEeCCcEEEEEEeEeCCCCeeeEEEeCCcEEEEEecCCccceeeecEEEEcCCceEEEEEEeCCCCCcceEEEEee
Q 010700 214 ETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASA 292 (503)
Q Consensus 214 ~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dvlv~~~~~~g~~y~i~~~~ 292 (503)
..+.+..|+.+||++-... -.|.|.+.+...+ +..-||..-.+.+.+++ +| .|..+++-
T Consensus 116 ~~l~lp~g~~v~~~ltS~D--ViHsf~vp~l~~k----------------~d~~PG~~~~~~~~~~~-~G-~y~g~C~e 174 (194)
T MTH00047 116 KPLRLVYGVPYHLLVTSSD--VIHSFSVPDLNLK----------------MDAIPGRINHLFFCPDR-HG-VFVGYCSE 174 (194)
T ss_pred ceEEEeCCCEEEeeeecCc--cccceeccccCce----------------eecCCCceEEEEEEcCC-CE-EEEEEeeh
Confidence 4578999999999996544 3566776655433 23347888888888774 57 78887754
No 115
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=24.28 E-value=42 Score=24.05 Aligned_cols=22 Identities=9% Similarity=0.282 Sum_probs=18.1
Q ss_pred EEEcCCCC-CceEEEecCCEEEE
Q 010700 49 IAINGKFP-GPTINVTTNNNVVV 70 (503)
Q Consensus 49 ~~~Ng~~p-gP~i~~~~Gd~v~v 70 (503)
+.+||+.- -|..+++.||.|.|
T Consensus 36 V~VNg~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 36 VLVNGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred EEECCEEccCCCCCCCCCCEEEe
Confidence 56788864 68899999999886
No 116
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=23.91 E-value=3.1e+02 Score=22.99 Aligned_cols=60 Identities=17% Similarity=0.249 Sum_probs=32.8
Q ss_pred eEEEecCCEEEEEEEeCCCC-----CeeEEEc--cCCCCCC-CCCCCCC--CCCCCCCCCCceEEEEEeC
Q 010700 59 TINVTTNNNVVVNVRNKLDE-----SLLIHWS--GIQQRRS-SWQDGLL--GTNCPIPPKWNWTYQFQVK 118 (503)
Q Consensus 59 ~i~~~~Gd~v~v~v~N~l~~-----~~siH~H--G~~~~~~-~~~DG~~--~~q~~i~PG~~~~y~f~~~ 118 (503)
.=.++.|+.+.+.+.=.... .+.+|+. |+...-. +..|+=. +..|||.+|+.++|.+.++
T Consensus 23 PC~l~rG~~~~~~i~F~~~~~~~~~~~~v~~~~~gv~ip~~~~~~daC~~~~~~CPl~~G~~~~y~~~~~ 92 (123)
T cd00916 23 PCKLKRGSTAKVSIDFTPNFDSTSLKTEVHAILLGVPVPFPLPNPDACKNLGTSCPLSAGEDVTYTLSLP 92 (123)
T ss_pred CCEEECCCEEEEEEEEEcCcccceeEEEEEEEECCEEecCCCCCCccccCCCCCCCCcCCcEEEEEEeee
Confidence 34556677766665522221 1223333 5432211 1234421 2579999999999999774
No 117
>PRK13205 ureB urease subunit beta; Reviewed
Probab=23.54 E-value=1.9e+02 Score=25.30 Aligned_cols=63 Identities=17% Similarity=0.161 Sum_probs=41.1
Q ss_pred eEEEecC-CEEEEEEEeCCCCCe--eEEEccCCCCCCCCCC-----C----CC-CCCCCCCCCCceEEEEEeCCCcee
Q 010700 59 TINVTTN-NNVVVNVRNKLDESL--LIHWSGIQQRRSSWQD-----G----LL-GTNCPIPPKWNWTYQFQVKDQVGS 123 (503)
Q Consensus 59 ~i~~~~G-d~v~v~v~N~l~~~~--siH~HG~~~~~~~~~D-----G----~~-~~q~~i~PG~~~~y~f~~~~~~Gt 123 (503)
.|.+++| +++.|.|+|..++|. .-|+|=.+....-..| | .| +|..-..||++.+.+... -.|.
T Consensus 12 ~IelN~GR~~i~L~V~NtGDRPIQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRFEPGe~ktV~LV~--igG~ 87 (162)
T PRK13205 12 SLTGNVGREAKTIEIINTGDRPVQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRLEPGDARTVNLVA--IGGD 87 (162)
T ss_pred CeEeCCCCcEEEEEEEeCCCCceEeccccchhhcCccccccHHHhcCcccccCCCCeEeECCCCeEEEEEEE--ccCc
Confidence 4888888 899999999998775 4577744432211122 1 23 255557899988887764 3554
No 118
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=23.41 E-value=2.9e+02 Score=24.02 Aligned_cols=54 Identities=19% Similarity=0.278 Sum_probs=37.5
Q ss_pred cEEEEEEeEeCCCCeeeEEEeCCcEEEEEecCCccceee-------ecEEEEcCCceE-EEEEEeC
Q 010700 222 KTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQN-------YTSLDIHVGQSY-SFLVTMD 279 (503)
Q Consensus 222 ~~~rlRliN~g~~~~~~~~i~gh~~~via~DG~~~~p~~-------~d~v~l~pGeR~-dvlv~~~ 279 (503)
.+|-|.+-|.|.. .+.++...++|+ +||+.+.+.. .+.+.|.|||-. ++.+.-.
T Consensus 70 ~t~t~yiKNtG~~---~~~fd~~sitVl-iDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~ev~vn~~ 131 (154)
T COG3354 70 YTYTFYIKNTGSD---SIAFDNTSITVL-IDGNIVTPAYVTFTSVNGSSIRLSPGQVGREVTVNEA 131 (154)
T ss_pred eEEEEEEecCCCc---ccccCCCeEEEE-EcCcEeccceEEEEecCCCeeEecCCceeeEEEeccC
Confidence 5788999999975 456677777765 5887765432 246779999987 4444433
No 119
>PRK13201 ureB urease subunit beta; Reviewed
Probab=23.40 E-value=2e+02 Score=24.59 Aligned_cols=64 Identities=16% Similarity=0.183 Sum_probs=41.9
Q ss_pred eEEEecC-CEEEEEEEeCCCCCe--eEEEccCCCCCCCCCC-----C----CC-CCCCCCCCCCceEEEEEeCCCceee
Q 010700 59 TINVTTN-NNVVVNVRNKLDESL--LIHWSGIQQRRSSWQD-----G----LL-GTNCPIPPKWNWTYQFQVKDQVGSF 124 (503)
Q Consensus 59 ~i~~~~G-d~v~v~v~N~l~~~~--siH~HG~~~~~~~~~D-----G----~~-~~q~~i~PG~~~~y~f~~~~~~Gt~ 124 (503)
.|.+++| +++.|.|+|..++|. .-|+|=.+....-..| | .| ||..-..||++.+.+... -.|.-
T Consensus 12 ~I~lN~gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~--igG~r 88 (136)
T PRK13201 12 EVEINNHHPETVIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQLVE--YAGKR 88 (136)
T ss_pred CeEeCCCCCEEEEEEEeCCCcceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeEEEEEEE--ccCce
Confidence 4888888 899999999998775 4577744432211122 1 23 355567899999888764 35654
No 120
>PRK13198 ureB urease subunit beta; Reviewed
Probab=22.89 E-value=1.9e+02 Score=25.31 Aligned_cols=63 Identities=22% Similarity=0.153 Sum_probs=41.4
Q ss_pred eEEEecC-CEEEEEEEeCCCCCe--eEEEccCCCCCCCCCC-----C----CC-CCCCCCCCCCceEEEEEeCCCcee
Q 010700 59 TINVTTN-NNVVVNVRNKLDESL--LIHWSGIQQRRSSWQD-----G----LL-GTNCPIPPKWNWTYQFQVKDQVGS 123 (503)
Q Consensus 59 ~i~~~~G-d~v~v~v~N~l~~~~--siH~HG~~~~~~~~~D-----G----~~-~~q~~i~PG~~~~y~f~~~~~~Gt 123 (503)
.|.+++| +++.|.|.|..+++. .-|+|=.+....-..| | .| ||..-.+||++.+..... -.|.
T Consensus 40 ~I~lN~gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~--~gG~ 115 (158)
T PRK13198 40 PITFNENKPVTKVKVRNTGDRPIQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRFEPGDETEVPLIP--FGGK 115 (158)
T ss_pred CeEeCCCCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeeCCCCeeEEEEEE--ccCc
Confidence 4889999 899999999998775 4577744432211112 1 22 355557899998887764 3555
No 121
>PRK13204 ureB urease subunit beta; Reviewed
Probab=22.68 E-value=1.9e+02 Score=25.31 Aligned_cols=64 Identities=19% Similarity=0.164 Sum_probs=41.7
Q ss_pred eEEEecC-CEEEEEEEeCCCCCe--eEEEccCCCCCCCCCC-----C----CC-CCCCCCCCCCceEEEEEeCCCceee
Q 010700 59 TINVTTN-NNVVVNVRNKLDESL--LIHWSGIQQRRSSWQD-----G----LL-GTNCPIPPKWNWTYQFQVKDQVGSF 124 (503)
Q Consensus 59 ~i~~~~G-d~v~v~v~N~l~~~~--siH~HG~~~~~~~~~D-----G----~~-~~q~~i~PG~~~~y~f~~~~~~Gt~ 124 (503)
.|++++| +++.|.|.|..+++. .-|+|=.+....-..| | .| ||..-.+||++.+.+... -.|.-
T Consensus 35 ~I~lN~gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~--~gG~r 111 (159)
T PRK13204 35 PIEINQGRPRTTLTVRNTGDRPIQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRFEPGDEKEVTLVP--FAGKR 111 (159)
T ss_pred CeEeCCCCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeeEEEEEE--ccCce
Confidence 4889999 899999999998775 4577754433211122 1 22 255557889988887764 35553
No 122
>KOG4680 consensus Uncharacterized conserved protein, contains ML domain [General function prediction only]
Probab=22.16 E-value=5.2e+02 Score=22.36 Aligned_cols=82 Identities=22% Similarity=0.274 Sum_probs=41.8
Q ss_pred EEEEEEEEEEEeCCCCc---eeEEEEEcCCCCCceEEEecCCEEEEEEEeCCCCCeeEEEccCCCCCCCCCCCCCCCCCC
Q 010700 28 VYFDFEVSYITASPLGV---PQQVIAINGKFPGPTINVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLLGTNCP 104 (503)
Q Consensus 28 ~~~~l~i~~~~~~~dG~---~~~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DG~~~~q~~ 104 (503)
-+|...+++.++.|+-. +--.+.++|.. |-+| ..|.-| |+|.= .-+|.|--..-. =| -+.||
T Consensus 34 d~~~VkV~~Vni~PnP~a~Ge~aTf~i~~nt-g~tI--s~Gk~V-IeV~y-----~gi~ihsethDL---Cd---etsCP 98 (153)
T KOG4680|consen 34 DEYEVKVKEVNISPNPPARGENATFSISGNT-GETI--SEGKYV-IEVSY-----GGIRIHSETHDL---CD---ETSCP 98 (153)
T ss_pred ccceEEEEEEecCCCCCCCCCccEEEEeccc-ccEe--eCCeEE-EEEEE-----eeEEEeeccccc---cc---cccCC
Confidence 45688899999988732 12235566654 3332 244444 44432 234444321110 11 14699
Q ss_pred CCCCCceE-EEEEeC--CCceee
Q 010700 105 IPPKWNWT-YQFQVK--DQVGSF 124 (503)
Q Consensus 105 i~PG~~~~-y~f~~~--~~~Gt~ 124 (503)
|+||+-.. ....+| -.+|+|
T Consensus 99 VepG~f~~~hsq~LPg~tPPG~Y 121 (153)
T KOG4680|consen 99 VEPGDFLVAHSQVLPGYTPPGSY 121 (153)
T ss_pred cCcCceeeeeeEeccCcCCCceE
Confidence 99998332 222233 246776
No 123
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=21.95 E-value=4.4e+02 Score=23.52 Aligned_cols=42 Identities=10% Similarity=-0.281 Sum_probs=28.0
Q ss_pred CCCCCceEEEEEeCCCceeeEEccCch-hhhhcCceeeEEEEeC
Q 010700 105 IPPKWNWTYQFQVKDQVGSFFYFPSLH-FQRASGGFGGFIINNR 147 (503)
Q Consensus 105 i~PG~~~~y~f~~~~~~Gt~wyH~H~~-~q~~~Gl~G~liV~~~ 147 (503)
+-||..-...|.+ +++|+|+-.|.-- .-....|.+.+.|.++
T Consensus 107 avPGr~n~l~~~~-~~~G~y~gqCsElCG~gHs~M~~~V~vvs~ 149 (162)
T PTZ00047 107 AIPGRLHKINTFI-LREGVFYGQCSEMCGTLHGFMPIVVEAVSP 149 (162)
T ss_pred ccCCceEEEEEec-CCCeEEEEEcchhcCcCccCceEEEEEeCH
Confidence 4578877788877 6899999999832 1112336666766653
No 124
>KOG1554 consensus COP9 signalosome, subunit CSN5 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.54 E-value=63 Score=31.25 Aligned_cols=27 Identities=19% Similarity=0.159 Sum_probs=16.9
Q ss_pred eeEEccCch---------------hhhhcCceeeEEEEeCCC
Q 010700 123 SFFYFPSLH---------------FQRASGGFGGFIINNRAI 149 (503)
Q Consensus 123 t~wyH~H~~---------------~q~~~Gl~G~liV~~~~~ 149 (503)
.=|||||.+ -|...-.+-+++|.|...
T Consensus 134 VGWyHSHPgYgCWLSgIDVsTQ~lNQ~fQePfvAvViDP~Rt 175 (347)
T KOG1554|consen 134 VGWYHSHPGYGCWLSGIDVSTQMLNQRFQEPFVAVVIDPTRT 175 (347)
T ss_pred eeeeecCCCCCccccCcchhHHHHhhhhcCCeEEEEecCccc
Confidence 469999953 133334667777777543
No 125
>PF09394 Inhibitor_I42: Chagasin family peptidase inhibitor I42; InterPro: IPR018990 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Chagasin reversible inhibitor of papain-like cysteine proteases []. Chagasin has a beta-barrel structure, which is a unique variant of the immunoglobulin fold with homology to human CD8alpha [, ].; PDB: 2NQD_A 2NNR_A 2H7W_B 3E1Z_A 3CBK_B 3CBJ_B 2OUL_B 2FO8_A 2WGN_B 2C34_A ....
Probab=20.94 E-value=1.5e+02 Score=23.08 Aligned_cols=57 Identities=16% Similarity=0.202 Sum_probs=35.8
Q ss_pred EEEecCCEEEEEEEeCCCCCeeEEEccCCCCCCCCCCCCC--------CCCC--CCCCCCceEEEEEeCCCceee
Q 010700 60 INVTTNNNVVVNVRNKLDESLLIHWSGIQQRRSSWQDGLL--------GTNC--PIPPKWNWTYQFQVKDQVGSF 124 (503)
Q Consensus 60 i~~~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DG~~--------~~q~--~i~PG~~~~y~f~~~~~~Gt~ 124 (503)
|.++.||++.|+|.-+-.....-+.... .++.. .... .+.-+....+.|++. .+|+.
T Consensus 1 I~v~~g~~~~I~L~~npstGY~W~~~~~-------~~~l~l~~~~~~~~~~~~~~vG~~g~~~f~f~a~-~~G~~ 67 (92)
T PF09394_consen 1 ITVKVGDTFEIELPENPSTGYSWSLSSD-------SDGLQLVSEEYIPDNSPSGLVGAPGTRTFTFKAL-KPGTT 67 (92)
T ss_dssp -EEETTSEEEEEEEEBCCGTBEEEECTS-------TTTEEEEEEEEEESSTSSTSSTSSEEEEEEEEES-SSEEE
T ss_pred CeecCCCEEEEEECCCCCCCeEEEEecC-------CCeEEEcCCcEEeCCCCcCCCCCCcEEEEEEEEe-cCeeE
Confidence 6899999999999988766655555441 11211 0011 345566778889884 67864
No 126
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=20.60 E-value=6.3e+02 Score=24.24 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=12.5
Q ss_pred CceEEEecCCEEEEEEEe
Q 010700 57 GPTINVTTNNNVVVNVRN 74 (503)
Q Consensus 57 gP~i~~~~Gd~v~v~v~N 74 (503)
.|.+|+++|++-.||+..
T Consensus 85 PPlfrl~p~~~q~lRI~~ 102 (253)
T PRK15249 85 PPVFRIQPKAGQVVRVIY 102 (253)
T ss_pred CCeEEecCCCceEEEEEE
Confidence 367777777777776654
No 127
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=20.53 E-value=80 Score=25.41 Aligned_cols=23 Identities=39% Similarity=0.361 Sum_probs=9.7
Q ss_pred CccchhhHHH--HHHHHHHHhhhhcC
Q 010700 1 MALCRGLSLL--AIHIALLASLCSAA 24 (503)
Q Consensus 1 ~~~~~~~~~~--~~~~~~~~~~~~~~ 24 (503)
|+ ++.++++ ++.++||++|..++
T Consensus 1 Ma-SK~~llL~l~LA~lLlisSevaa 25 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAALLLISSEVAA 25 (95)
T ss_pred Cc-hhHHHHHHHHHHHHHHHHhhhhh
Confidence 44 4444444 23334444444433
No 128
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=20.16 E-value=6.3e+02 Score=23.86 Aligned_cols=18 Identities=6% Similarity=0.228 Sum_probs=12.0
Q ss_pred CceEEEecCCEEEEEEEe
Q 010700 57 GPTINVTTNNNVVVNVRN 74 (503)
Q Consensus 57 gP~i~~~~Gd~v~v~v~N 74 (503)
.|.+|+++|++-.||+.-
T Consensus 79 PPlfrl~~~~~~~lRI~~ 96 (228)
T PRK15188 79 PPLFVIQPKKENILRIMY 96 (228)
T ss_pred CCeEEECCCCceEEEEEE
Confidence 367777777776666553
Done!