Query 010702
Match_columns 503
No_of_seqs 440 out of 4050
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 03:35:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010702.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010702hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0362 Gnd 6-phosphogluconate 100.0 2E-132 5E-137 976.3 46.0 469 6-483 3-471 (473)
2 KOG2653 6-phosphogluconate deh 100.0 6E-124 1E-128 902.0 41.1 479 1-487 1-481 (487)
3 PTZ00142 6-phosphogluconate de 100.0 3E-114 6E-119 909.5 50.9 469 6-480 1-470 (470)
4 PLN02350 phosphogluconate dehy 100.0 3E-113 5E-118 902.2 53.1 481 1-483 1-482 (493)
5 PRK09287 6-phosphogluconate de 100.0 3E-112 6E-117 890.9 49.6 454 17-481 1-457 (459)
6 TIGR00873 gnd 6-phosphoglucona 100.0 2E-111 4E-116 888.0 51.4 463 8-480 1-466 (467)
7 PF00393 6PGD: 6-phosphoglucon 100.0 2.8E-86 6.2E-91 644.4 27.3 291 184-480 1-291 (291)
8 COG1023 Gnd Predicted 6-phosph 100.0 1.1E-60 2.3E-65 441.8 24.9 298 7-469 1-299 (300)
9 TIGR00872 gnd_rel 6-phosphoglu 100.0 2.5E-54 5.4E-59 434.4 33.9 295 7-468 1-297 (298)
10 PRK09599 6-phosphogluconate de 100.0 4E-47 8.6E-52 382.9 35.0 299 7-469 1-300 (301)
11 COG2084 MmsB 3-hydroxyisobutyr 100.0 9.3E-47 2E-51 369.4 29.2 256 7-289 1-261 (286)
12 KOG0409 Predicted dehydrogenas 100.0 3.7E-43 8E-48 337.0 25.9 263 6-296 35-302 (327)
13 PRK12490 6-phosphogluconate de 100.0 1.2E-40 2.6E-45 335.3 32.0 274 7-299 1-276 (299)
14 PRK15059 tartronate semialdehy 100.0 1.2E-40 2.6E-45 333.6 29.2 261 7-296 1-265 (292)
15 PRK15461 NADH-dependent gamma- 100.0 1.6E-39 3.5E-44 326.6 29.2 263 7-297 2-269 (296)
16 TIGR01692 HIBADH 3-hydroxyisob 100.0 3E-38 6.5E-43 316.5 28.7 260 11-297 1-270 (288)
17 PLN02858 fructose-bisphosphate 100.0 2.6E-37 5.6E-42 360.4 30.5 262 7-296 5-273 (1378)
18 PRK11559 garR tartronate semia 100.0 1E-36 2.2E-41 306.7 30.3 265 5-297 1-269 (296)
19 TIGR01505 tartro_sem_red 2-hyd 100.0 1.8E-36 3.9E-41 304.2 29.9 262 8-297 1-266 (291)
20 PLN02858 fructose-bisphosphate 100.0 1.1E-35 2.4E-40 346.8 29.9 270 1-298 319-595 (1378)
21 PF03446 NAD_binding_2: NAD bi 100.0 2.2E-31 4.7E-36 244.6 14.0 159 6-180 1-163 (163)
22 TIGR03026 NDP-sugDHase nucleot 100.0 1.2E-27 2.5E-32 251.5 23.5 251 7-289 1-289 (411)
23 PRK11064 wecC UDP-N-acetyl-D-m 99.9 7.6E-24 1.6E-28 222.1 23.1 206 6-224 3-247 (415)
24 PRK14618 NAD(P)H-dependent gly 99.9 2.5E-24 5.4E-29 219.8 15.7 284 1-309 1-321 (328)
25 PRK15182 Vi polysaccharide bio 99.9 2.9E-23 6.2E-28 217.7 23.7 249 5-289 5-286 (425)
26 PRK00094 gpsA NAD(P)H-dependen 99.9 1.3E-23 2.8E-28 214.1 19.3 283 6-308 1-322 (325)
27 PF00393 6PGD: 6-phosphoglucon 99.9 1.7E-24 3.6E-29 211.7 8.8 118 328-450 1-120 (291)
28 PRK06129 3-hydroxyacyl-CoA deh 99.9 2E-22 4.4E-27 203.9 22.4 251 7-291 3-274 (308)
29 PRK15057 UDP-glucose 6-dehydro 99.9 2.3E-22 4.9E-27 208.6 21.4 200 7-224 1-232 (388)
30 COG0362 Gnd 6-phosphogluconate 99.9 1.5E-23 3.2E-28 207.8 5.9 122 324-450 175-299 (473)
31 PRK14619 NAD(P)H-dependent gly 99.9 3.8E-22 8.3E-27 201.9 16.3 260 6-310 4-300 (308)
32 KOG2653 6-phosphogluconate deh 99.9 3.1E-22 6.8E-27 195.2 6.8 122 324-450 179-302 (487)
33 PRK12557 H(2)-dependent methyl 99.8 2.1E-19 4.6E-24 183.0 23.2 200 7-224 1-236 (342)
34 COG1023 Gnd Predicted 6-phosph 99.8 5E-20 1.1E-24 171.7 13.7 197 64-300 78-277 (300)
35 PRK07531 bifunctional 3-hydrox 99.8 4.7E-19 1E-23 190.1 20.2 195 5-225 3-218 (495)
36 PRK09260 3-hydroxybutyryl-CoA 99.8 1.1E-18 2.3E-23 175.1 20.1 193 7-225 2-218 (288)
37 COG0677 WecC UDP-N-acetyl-D-ma 99.8 4.3E-18 9.4E-23 170.1 20.9 207 5-224 8-250 (436)
38 PLN02688 pyrroline-5-carboxyla 99.8 1.8E-17 4E-22 164.2 24.6 235 7-287 1-251 (266)
39 PRK08268 3-hydroxy-acyl-CoA de 99.8 8.2E-18 1.8E-22 180.4 21.1 188 7-225 8-223 (507)
40 PRK08229 2-dehydropantoate 2-r 99.8 1.5E-17 3.3E-22 170.7 21.8 262 5-289 1-309 (341)
41 PRK07819 3-hydroxybutyryl-CoA 99.8 1.4E-17 3E-22 166.6 20.3 200 1-225 1-223 (286)
42 PRK07679 pyrroline-5-carboxyla 99.8 1.2E-17 2.6E-22 166.7 19.6 184 7-226 4-208 (279)
43 PLN02353 probable UDP-glucose 99.8 1.1E-16 2.4E-21 169.6 26.1 254 6-289 1-299 (473)
44 COG1004 Ugd Predicted UDP-gluc 99.8 1.9E-16 4.2E-21 159.2 26.0 254 7-290 1-288 (414)
45 PRK12490 6-phosphogluconate de 99.8 5E-18 1.1E-22 171.1 14.6 133 325-468 165-298 (299)
46 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.8 3.2E-17 6.9E-22 175.4 19.8 190 6-225 5-221 (503)
47 COG0240 GpsA Glycerol-3-phosph 99.8 2.9E-17 6.2E-22 163.1 17.7 288 6-309 1-322 (329)
48 PRK07417 arogenate dehydrogena 99.8 2.5E-17 5.3E-22 164.5 16.9 175 7-201 1-188 (279)
49 PRK07066 3-hydroxybutyryl-CoA 99.7 1.8E-16 3.9E-21 160.0 19.9 193 7-225 8-221 (321)
50 PRK08507 prephenate dehydrogen 99.7 2E-16 4.3E-21 157.6 19.9 190 7-223 1-205 (275)
51 PRK06130 3-hydroxybutyryl-CoA 99.7 4.7E-16 1E-20 157.7 21.3 195 6-225 4-217 (311)
52 PRK07530 3-hydroxybutyryl-CoA 99.7 7.5E-16 1.6E-20 154.8 20.5 191 7-224 5-219 (292)
53 PLN02545 3-hydroxybutyryl-CoA 99.7 5.2E-16 1.1E-20 156.2 19.1 191 7-224 5-219 (295)
54 PTZ00142 6-phosphogluconate de 99.7 2.9E-17 6.2E-22 173.9 8.8 118 325-450 175-298 (470)
55 PRK06035 3-hydroxyacyl-CoA deh 99.7 8.3E-16 1.8E-20 154.4 18.9 193 7-225 4-222 (291)
56 PRK12439 NAD(P)H-dependent gly 99.7 4.9E-15 1.1E-19 152.0 22.1 290 5-312 6-331 (341)
57 PRK08293 3-hydroxybutyryl-CoA 99.7 6E-15 1.3E-19 147.9 22.2 195 7-224 4-221 (287)
58 PRK11199 tyrA bifunctional cho 99.7 1.8E-15 3.8E-20 156.9 18.2 178 6-222 98-279 (374)
59 PRK08655 prephenate dehydrogen 99.7 6.8E-15 1.5E-19 155.4 22.7 194 7-222 1-200 (437)
60 PRK05808 3-hydroxybutyryl-CoA 99.7 4.2E-15 9E-20 148.7 19.8 193 7-225 4-219 (282)
61 TIGR00873 gnd 6-phosphoglucona 99.7 1.1E-16 2.3E-21 169.6 8.6 120 325-450 172-294 (467)
62 PRK09287 6-phosphogluconate de 99.7 1.6E-16 3.5E-21 167.5 8.4 118 325-450 164-287 (459)
63 PRK07680 late competence prote 99.7 6.5E-14 1.4E-18 139.4 26.3 195 7-226 1-204 (273)
64 PRK07502 cyclohexadienyl dehyd 99.6 9.9E-15 2.1E-19 147.7 18.8 169 1-185 1-184 (307)
65 PTZ00345 glycerol-3-phosphate 99.6 7.5E-15 1.6E-19 150.6 17.4 288 6-310 11-355 (365)
66 PRK11880 pyrroline-5-carboxyla 99.6 1.7E-13 3.7E-18 135.9 25.7 243 5-287 1-252 (267)
67 PRK06476 pyrroline-5-carboxyla 99.6 1.5E-13 3.3E-18 135.6 24.9 234 7-287 1-244 (258)
68 TIGR03376 glycerol3P_DH glycer 99.6 9.7E-15 2.1E-19 148.8 16.7 278 8-303 1-337 (342)
69 PRK12921 2-dehydropantoate 2-r 99.6 5.2E-14 1.1E-18 142.2 21.8 255 7-289 1-293 (305)
70 TIGR01724 hmd_rel H2-forming N 99.6 1.2E-13 2.7E-18 136.1 21.8 192 7-218 1-231 (341)
71 PRK14620 NAD(P)H-dependent gly 99.6 2.3E-13 5E-18 138.9 23.5 276 7-305 1-321 (326)
72 PRK06522 2-dehydropantoate 2-r 99.6 9E-14 1.9E-18 140.2 19.7 255 7-289 1-290 (304)
73 PRK08269 3-hydroxybutyryl-CoA 99.6 5.2E-14 1.1E-18 142.4 17.6 178 17-225 1-216 (314)
74 PRK12491 pyrroline-5-carboxyla 99.6 7.5E-13 1.6E-17 131.5 25.0 194 6-225 2-205 (272)
75 PRK06545 prephenate dehydrogen 99.6 2.2E-13 4.8E-18 140.7 19.5 170 7-190 1-184 (359)
76 PRK06249 2-dehydropantoate 2-r 99.5 1E-12 2.2E-17 133.4 21.4 254 5-289 4-301 (313)
77 COG1250 FadB 3-hydroxyacyl-CoA 99.5 4.1E-13 8.8E-18 133.7 17.0 192 6-225 3-219 (307)
78 PF03721 UDPG_MGDP_dh_N: UDP-g 99.5 3.2E-13 7E-18 126.3 12.9 149 7-160 1-184 (185)
79 COG0287 TyrA Prephenate dehydr 99.5 2.3E-12 5E-17 127.6 17.7 161 5-181 2-172 (279)
80 PLN02256 arogenate dehydrogena 99.5 9.3E-12 2E-16 125.3 21.7 159 6-182 36-206 (304)
81 TIGR01915 npdG NADPH-dependent 99.4 1.9E-12 4.1E-17 124.7 14.1 165 7-184 1-193 (219)
82 COG2085 Predicted dinucleotide 99.4 1.8E-12 4E-17 120.9 13.3 166 6-186 1-186 (211)
83 PRK11730 fadB multifunctional 99.4 4.3E-12 9.2E-17 141.9 18.5 191 6-225 313-528 (715)
84 PLN02712 arogenate dehydrogena 99.4 3.7E-12 8E-17 140.7 17.2 158 5-181 368-538 (667)
85 TIGR02437 FadB fatty oxidation 99.4 5.2E-12 1.1E-16 140.9 18.6 191 6-225 313-528 (714)
86 TIGR02441 fa_ox_alpha_mit fatt 99.4 4.3E-12 9.3E-17 141.9 17.6 191 7-226 336-551 (737)
87 TIGR02440 FadJ fatty oxidation 99.4 7.8E-12 1.7E-16 139.4 19.1 191 6-225 304-520 (699)
88 PLN02350 phosphogluconate dehy 99.4 9.8E-13 2.1E-17 139.7 10.8 118 325-450 181-304 (493)
89 PF02737 3HCDH_N: 3-hydroxyacy 99.4 2.4E-12 5.2E-17 120.0 12.2 153 8-179 1-178 (180)
90 PRK07634 pyrroline-5-carboxyla 99.4 3.6E-11 7.8E-16 117.6 20.8 193 7-226 5-208 (245)
91 COG0345 ProC Pyrroline-5-carbo 99.4 1.7E-10 3.6E-15 112.9 24.9 184 6-225 1-202 (266)
92 PF14833 NAD_binding_11: NAD-b 99.4 1.9E-12 4.2E-17 112.9 10.2 103 182-296 1-104 (122)
93 PRK11154 fadJ multifunctional 99.4 1.5E-11 3.3E-16 137.4 19.8 191 6-225 309-525 (708)
94 PF03807 F420_oxidored: NADP o 99.4 2.3E-12 4.9E-17 107.3 9.8 90 8-108 1-95 (96)
95 PRK05708 2-dehydropantoate 2-r 99.4 1.5E-11 3.3E-16 124.3 17.8 255 6-289 2-289 (305)
96 PRK06928 pyrroline-5-carboxyla 99.4 1.7E-10 3.6E-15 115.2 24.3 147 6-167 1-156 (277)
97 PRK14806 bifunctional cyclohex 99.3 3.6E-11 7.9E-16 135.8 19.4 160 7-181 4-178 (735)
98 PF01210 NAD_Gly3P_dh_N: NAD-d 99.3 6.5E-12 1.4E-16 114.6 10.8 99 8-110 1-106 (157)
99 PRK05479 ketol-acid reductoiso 99.3 7.3E-11 1.6E-15 119.2 18.2 194 6-220 17-224 (330)
100 PTZ00431 pyrroline carboxylate 99.3 6E-10 1.3E-14 110.1 24.1 231 7-285 4-245 (260)
101 PLN02712 arogenate dehydrogena 99.3 1.2E-10 2.6E-15 128.7 20.5 158 6-181 52-221 (667)
102 PRK08818 prephenate dehydrogen 99.3 8.4E-11 1.8E-15 120.9 17.5 145 6-182 4-157 (370)
103 COG1893 ApbA Ketopantoate redu 99.3 3.2E-10 6.8E-15 114.4 20.8 254 7-288 1-291 (307)
104 PF10727 Rossmann-like: Rossma 99.3 6.3E-12 1.4E-16 109.8 5.9 109 6-127 10-121 (127)
105 KOG2304 3-hydroxyacyl-CoA dehy 99.2 5.2E-11 1.1E-15 110.8 10.6 195 6-225 11-233 (298)
106 PRK07574 formate dehydrogenase 99.1 1.5E-09 3.2E-14 112.4 16.1 111 7-127 193-304 (385)
107 KOG2305 3-hydroxyacyl-CoA dehy 99.1 1.3E-09 2.8E-14 101.6 13.3 203 7-235 4-229 (313)
108 PRK12480 D-lactate dehydrogena 99.1 1E-09 2.2E-14 112.0 13.5 115 7-135 147-262 (330)
109 PLN03139 formate dehydrogenase 99.1 2.6E-09 5.6E-14 110.5 16.1 111 7-127 200-311 (386)
110 TIGR00745 apbA_panE 2-dehydrop 99.1 1E-08 2.2E-13 102.8 19.6 244 17-289 2-283 (293)
111 PF02153 PDH: Prephenate dehyd 99.0 7.8E-09 1.7E-13 102.1 16.2 143 21-180 1-158 (258)
112 cd01075 NAD_bind_Leu_Phe_Val_D 99.0 4.6E-09 9.9E-14 99.6 13.9 137 7-161 29-168 (200)
113 PRK13243 glyoxylate reductase; 99.0 2.3E-09 5E-14 109.6 12.4 109 7-127 151-260 (333)
114 TIGR00465 ilvC ketol-acid redu 99.0 1.5E-08 3.2E-13 102.6 16.8 146 7-167 4-160 (314)
115 PF02826 2-Hacid_dh_C: D-isome 99.0 3.1E-09 6.8E-14 99.0 10.6 110 7-127 37-147 (178)
116 cd01065 NAD_bind_Shikimate_DH 99.0 1.8E-09 3.9E-14 97.9 8.4 118 6-131 19-138 (155)
117 PRK15469 ghrA bifunctional gly 99.0 3.3E-09 7.2E-14 107.3 10.8 111 7-129 137-248 (312)
118 PRK08605 D-lactate dehydrogena 99.0 5.2E-09 1.1E-13 107.0 12.2 108 7-127 147-256 (332)
119 PRK06436 glycerate dehydrogena 98.9 4.4E-09 9.4E-14 105.9 11.0 107 7-128 123-230 (303)
120 PRK13302 putative L-aspartate 98.9 1.1E-08 2.3E-13 101.7 12.1 125 1-137 1-129 (271)
121 PRK13403 ketol-acid reductoiso 98.9 1.3E-08 2.8E-13 101.6 11.1 191 7-220 17-222 (335)
122 TIGR01327 PGDH D-3-phosphoglyc 98.8 2.9E-08 6.3E-13 107.5 11.8 111 7-128 139-250 (525)
123 PLN02928 oxidoreductase family 98.8 6.9E-08 1.5E-12 99.2 13.7 114 7-127 160-282 (347)
124 PRK13581 D-3-phosphoglycerate 98.8 4.1E-08 8.9E-13 106.4 11.9 108 7-126 141-249 (526)
125 COG0111 SerA Phosphoglycerate 98.8 4.5E-08 9.7E-13 99.3 10.9 109 7-126 143-252 (324)
126 PF07991 IlvN: Acetohydroxy ac 98.8 5.1E-08 1.1E-12 87.6 10.0 89 7-107 5-95 (165)
127 KOG2380 Prephenate dehydrogena 98.8 1E-07 2.2E-12 94.0 12.8 149 7-167 53-213 (480)
128 PRK00257 erythronate-4-phospha 98.7 4.5E-08 9.7E-13 101.3 9.9 115 7-136 117-236 (381)
129 PRK08410 2-hydroxyacid dehydro 98.7 8.3E-08 1.8E-12 97.2 11.3 106 7-127 146-252 (311)
130 COG1052 LdhA Lactate dehydroge 98.7 1.5E-07 3.2E-12 95.5 12.6 116 7-134 147-263 (324)
131 PRK11790 D-3-phosphoglycerate 98.7 1.1E-07 2.4E-12 99.8 11.5 108 7-128 152-260 (409)
132 PRK15409 bifunctional glyoxyla 98.7 3.6E-07 7.7E-12 93.0 14.6 108 7-126 146-255 (323)
133 PRK06487 glycerate dehydrogena 98.7 3.1E-07 6.7E-12 93.3 13.4 104 7-127 149-253 (317)
134 PRK13304 L-aspartate dehydroge 98.6 2.7E-07 5.9E-12 91.5 12.6 119 6-137 1-126 (265)
135 PRK06932 glycerate dehydrogena 98.6 2.4E-07 5.3E-12 94.0 12.4 105 7-127 148-253 (314)
136 TIGR02853 spore_dpaA dipicolin 98.6 3.2E-07 7E-12 91.8 13.2 111 7-132 152-262 (287)
137 COG4007 Predicted dehydrogenas 98.6 3E-06 6.5E-11 80.8 18.0 201 6-222 1-236 (340)
138 TIGR00112 proC pyrroline-5-car 98.6 7.7E-06 1.7E-10 80.1 21.8 171 29-225 9-185 (245)
139 PRK15438 erythronate-4-phospha 98.6 1.6E-07 3.4E-12 97.0 9.8 105 7-126 117-226 (378)
140 PRK06141 ornithine cyclodeamin 98.5 3.4E-07 7.3E-12 93.0 8.9 115 7-131 126-242 (314)
141 PLN02306 hydroxypyruvate reduc 98.5 1.1E-06 2.3E-11 91.5 12.6 127 7-136 166-301 (386)
142 PRK14194 bifunctional 5,10-met 98.5 3.8E-07 8.2E-12 90.9 8.0 74 7-110 160-234 (301)
143 KOG0069 Glyoxylate/hydroxypyru 98.5 1.3E-06 2.8E-11 88.0 11.5 108 6-124 162-270 (336)
144 KOG2666 UDP-glucose/GDP-mannos 98.4 1.8E-05 4E-10 77.6 18.2 210 6-224 1-251 (481)
145 PF02558 ApbA: Ketopantoate re 98.4 1.1E-06 2.3E-11 79.3 8.8 98 9-111 1-105 (151)
146 PF01408 GFO_IDH_MocA: Oxidore 98.4 9E-06 2E-10 70.1 13.2 112 7-128 1-116 (120)
147 PRK08306 dipicolinate synthase 98.4 2.1E-06 4.5E-11 86.5 10.4 110 7-131 153-262 (296)
148 PRK06444 prephenate dehydrogen 98.3 2.8E-05 6.1E-10 73.4 17.1 116 7-182 1-123 (197)
149 TIGR00507 aroE shikimate 5-deh 98.3 1.7E-06 3.8E-11 86.0 8.9 117 7-131 118-236 (270)
150 COG1748 LYS9 Saccharopine dehy 98.3 7.8E-06 1.7E-10 84.3 13.5 127 6-139 1-131 (389)
151 cd05213 NAD_bind_Glutamyl_tRNA 98.3 4.7E-06 1E-10 84.6 10.6 95 6-108 178-274 (311)
152 PRK14188 bifunctional 5,10-met 98.2 3.2E-06 6.9E-11 84.4 8.1 73 7-110 159-233 (296)
153 PF01488 Shikimate_DH: Shikima 98.2 4.4E-06 9.5E-11 74.2 7.4 97 6-108 12-110 (135)
154 PRK06223 malate dehydrogenase; 98.2 1.3E-05 2.7E-10 81.3 10.9 104 6-114 2-126 (307)
155 TIGR00872 gnd_rel 6-phosphoglu 98.1 1.5E-05 3.2E-10 80.5 9.7 110 178-299 164-275 (298)
156 TIGR02371 ala_DH_arch alanine 98.1 1.6E-05 3.4E-10 81.2 9.7 97 7-112 129-227 (325)
157 COG1712 Predicted dinucleotide 98.1 4.8E-05 1E-09 71.6 11.9 120 7-137 1-125 (255)
158 COG0059 IlvC Ketol-acid reduct 98.1 1.8E-05 3.9E-10 77.6 9.2 87 7-105 19-107 (338)
159 TIGR01763 MalateDH_bact malate 98.0 3.7E-05 8.1E-10 77.7 11.4 104 7-115 2-126 (305)
160 PRK14179 bifunctional 5,10-met 98.0 1.2E-05 2.6E-10 79.7 7.3 74 7-110 159-233 (284)
161 smart00859 Semialdhyde_dh Semi 98.0 2.2E-05 4.7E-10 68.3 7.6 98 8-110 1-102 (122)
162 COG0569 TrkA K+ transport syst 98.0 9.9E-05 2.2E-09 71.3 12.3 99 7-109 1-103 (225)
163 PTZ00082 L-lactate dehydrogena 97.9 0.00012 2.5E-09 74.7 12.4 105 5-114 5-135 (321)
164 PF00670 AdoHcyase_NAD: S-aden 97.9 6.6E-05 1.4E-09 68.0 9.1 91 7-111 24-114 (162)
165 PLN00203 glutamyl-tRNA reducta 97.9 5.2E-05 1.1E-09 81.7 10.0 99 6-108 266-370 (519)
166 PRK05225 ketol-acid reductoiso 97.9 2.4E-05 5.3E-10 81.4 7.1 195 7-222 37-251 (487)
167 PRK08618 ornithine cyclodeamin 97.9 7.9E-05 1.7E-09 76.1 10.6 99 7-114 128-228 (325)
168 PRK06407 ornithine cyclodeamin 97.9 7.6E-05 1.6E-09 75.3 10.2 117 7-131 118-236 (301)
169 PTZ00075 Adenosylhomocysteinas 97.9 6.2E-05 1.3E-09 79.5 9.8 89 7-110 255-344 (476)
170 PRK09310 aroDE bifunctional 3- 97.9 5.4E-05 1.2E-09 81.3 9.6 105 7-130 333-437 (477)
171 cd05292 LDH_2 A subgroup of L- 97.9 0.00018 3.8E-09 73.0 12.7 97 7-108 1-117 (308)
172 TIGR01921 DAP-DH diaminopimela 97.9 0.00011 2.4E-09 74.2 11.0 86 7-108 4-92 (324)
173 PF01113 DapB_N: Dihydrodipico 97.9 6.6E-05 1.4E-09 65.6 8.2 107 7-124 1-115 (124)
174 TIGR00936 ahcY adenosylhomocys 97.8 0.00015 3.3E-09 75.6 12.2 100 7-121 196-297 (406)
175 TIGR00518 alaDH alanine dehydr 97.8 6.3E-05 1.4E-09 78.1 9.1 98 7-108 168-268 (370)
176 TIGR01035 hemA glutamyl-tRNA r 97.8 8.1E-05 1.7E-09 78.7 10.0 95 7-108 181-278 (417)
177 PRK07340 ornithine cyclodeamin 97.8 0.00011 2.5E-09 74.2 10.2 96 7-113 126-223 (304)
178 KOG2711 Glycerol-3-phosphate d 97.8 0.00029 6.2E-09 70.4 12.5 101 7-111 22-143 (372)
179 PRK13301 putative L-aspartate 97.8 0.00024 5.2E-09 69.5 11.5 119 6-138 2-128 (267)
180 cd01339 LDH-like_MDH L-lactate 97.8 0.00013 2.8E-09 73.7 10.1 101 9-114 1-122 (300)
181 cd05297 GH4_alpha_glucosidase_ 97.8 0.00012 2.6E-09 77.4 10.3 73 7-82 1-84 (423)
182 COG0673 MviM Predicted dehydro 97.8 0.00024 5.2E-09 72.7 12.2 112 5-127 2-120 (342)
183 PLN02819 lysine-ketoglutarate 97.8 0.00034 7.3E-09 80.7 14.4 122 6-134 569-706 (1042)
184 PRK00045 hemA glutamyl-tRNA re 97.8 7.3E-05 1.6E-09 79.2 8.4 95 7-108 183-281 (423)
185 PRK06823 ornithine cyclodeamin 97.8 0.00017 3.6E-09 73.3 10.5 97 7-112 129-227 (315)
186 PRK13303 L-aspartate dehydroge 97.7 0.00028 6E-09 70.0 11.6 119 6-138 1-127 (265)
187 PF02254 TrkA_N: TrkA-N domain 97.7 0.00063 1.4E-08 58.2 12.1 111 9-129 1-113 (116)
188 TIGR02992 ectoine_eutC ectoine 97.7 0.00018 3.8E-09 73.6 10.1 96 7-110 130-227 (326)
189 PRK05476 S-adenosyl-L-homocyst 97.7 0.0002 4.2E-09 75.3 10.6 90 7-111 213-303 (425)
190 PRK00258 aroE shikimate 5-dehy 97.7 9.2E-05 2E-09 74.0 7.5 117 7-130 124-242 (278)
191 cd01483 E1_enzyme_family Super 97.7 0.00025 5.3E-09 63.4 9.2 122 8-135 1-124 (143)
192 PRK08291 ectoine utilization p 97.7 0.00029 6.3E-09 72.1 10.8 96 7-110 133-230 (330)
193 PTZ00117 malate dehydrogenase; 97.7 0.00043 9.4E-09 70.5 11.9 104 6-114 5-129 (319)
194 PLN02494 adenosylhomocysteinas 97.6 0.00032 7E-09 74.0 11.0 88 7-109 255-343 (477)
195 COG0373 HemA Glutamyl-tRNA red 97.6 0.00027 5.9E-09 73.5 10.3 96 6-109 178-276 (414)
196 TIGR01809 Shik-DH-AROM shikima 97.6 0.00047 1E-08 69.0 11.7 119 7-129 126-251 (282)
197 cd01078 NAD_bind_H4MPT_DH NADP 97.6 0.00037 8E-09 65.7 10.3 101 7-110 29-132 (194)
198 PRK00048 dihydrodipicolinate r 97.6 0.00038 8.2E-09 68.7 10.5 100 6-119 1-104 (257)
199 COG2423 Predicted ornithine cy 97.6 0.00034 7.3E-09 71.1 10.2 118 7-132 131-250 (330)
200 cd05291 HicDH_like L-2-hydroxy 97.6 0.00063 1.4E-08 68.9 12.2 99 7-110 1-120 (306)
201 PRK12549 shikimate 5-dehydroge 97.6 0.00018 3.9E-09 72.1 7.9 117 7-130 128-248 (284)
202 PF03435 Saccharop_dh: Sacchar 97.6 0.00076 1.6E-08 70.6 12.9 123 9-139 1-130 (386)
203 PRK10669 putative cation:proto 97.6 0.00075 1.6E-08 74.1 13.3 116 7-132 418-535 (558)
204 PRK06270 homoserine dehydrogen 97.6 0.0016 3.4E-08 67.1 14.7 131 6-137 2-157 (341)
205 TIGR01761 thiaz-red thiazoliny 97.6 0.00077 1.7E-08 69.1 12.3 109 7-129 4-119 (343)
206 cd00401 AdoHcyase S-adenosyl-L 97.5 0.00048 1E-08 72.2 10.6 88 7-109 203-291 (413)
207 PRK06046 alanine dehydrogenase 97.5 0.00043 9.4E-09 70.7 10.1 97 7-112 130-228 (326)
208 TIGR00036 dapB dihydrodipicoli 97.5 0.00095 2.1E-08 66.2 12.0 115 7-129 2-122 (266)
209 PRK03562 glutathione-regulated 97.5 0.0014 3E-08 72.8 14.5 116 7-132 401-518 (621)
210 PF02423 OCD_Mu_crystall: Orni 97.5 0.00031 6.7E-09 71.4 8.7 99 7-112 129-229 (313)
211 PF01118 Semialdhyde_dh: Semia 97.5 0.0004 8.7E-09 60.3 8.2 95 8-110 1-100 (121)
212 PF00056 Ldh_1_N: lactate/mala 97.5 0.0009 2E-08 59.8 10.6 99 7-109 1-120 (141)
213 KOG3124 Pyrroline-5-carboxylat 97.5 0.0017 3.7E-08 62.6 12.8 190 7-223 1-201 (267)
214 PRK03659 glutathione-regulated 97.5 0.0014 3E-08 72.6 14.2 113 7-129 401-515 (601)
215 KOG2741 Dimeric dihydrodiol de 97.5 0.0017 3.7E-08 65.3 12.9 123 1-131 1-129 (351)
216 PRK07589 ornithine cyclodeamin 97.4 0.00084 1.8E-08 68.9 10.7 99 7-112 130-230 (346)
217 PRK04148 hypothetical protein; 97.4 0.00097 2.1E-08 58.7 9.5 99 7-112 18-116 (134)
218 cd00650 LDH_MDH_like NAD-depen 97.4 0.00066 1.4E-08 67.2 9.5 102 9-114 1-126 (263)
219 PRK00066 ldh L-lactate dehydro 97.4 0.0019 4.1E-08 65.7 12.8 101 5-110 5-125 (315)
220 cd01080 NAD_bind_m-THF_DH_Cycl 97.4 0.00055 1.2E-08 63.0 8.0 74 7-110 45-119 (168)
221 PRK11579 putative oxidoreducta 97.4 0.0023 5E-08 66.0 13.4 109 7-128 5-118 (346)
222 PRK00436 argC N-acetyl-gamma-g 97.4 0.00059 1.3E-08 70.3 8.8 101 5-112 1-104 (343)
223 PF13380 CoA_binding_2: CoA bi 97.4 0.00032 6.8E-09 60.6 5.7 104 8-132 2-109 (116)
224 KOG0068 D-3-phosphoglycerate d 97.4 0.00087 1.9E-08 66.8 9.2 105 7-123 147-252 (406)
225 PRK09496 trkA potassium transp 97.3 0.0019 4.2E-08 68.9 12.5 98 7-108 1-101 (453)
226 PRK13940 glutamyl-tRNA reducta 97.3 0.00047 1E-08 72.6 7.1 73 7-85 182-255 (414)
227 cd05211 NAD_bind_Glu_Leu_Phe_V 97.3 0.0099 2.2E-07 57.1 15.3 176 6-224 23-211 (217)
228 COG5495 Uncharacterized conser 97.3 0.0011 2.3E-08 62.8 8.2 189 7-219 11-207 (289)
229 cd05293 LDH_1 A subgroup of L- 97.3 0.0032 6.9E-08 63.9 12.2 99 7-110 4-123 (312)
230 PRK06199 ornithine cyclodeamin 97.2 0.0014 3E-08 68.3 9.5 97 7-108 156-260 (379)
231 COG0686 Ald Alanine dehydrogen 97.2 0.0012 2.7E-08 65.2 8.5 97 7-107 169-268 (371)
232 cd00300 LDH_like L-lactate deh 97.2 0.0031 6.7E-08 63.7 11.7 97 9-110 1-118 (300)
233 TIGR02354 thiF_fam2 thiamine b 97.2 0.0027 5.9E-08 60.2 10.4 33 6-38 21-54 (200)
234 PF01262 AlaDh_PNT_C: Alanine 97.2 0.00073 1.6E-08 62.2 6.3 98 7-108 21-140 (168)
235 COG2910 Putative NADH-flavin r 97.2 0.0017 3.7E-08 59.6 8.2 72 7-83 1-73 (211)
236 PF14833 NAD_binding_11: NAD-b 97.2 0.01 2.2E-07 51.5 12.9 102 326-443 1-104 (122)
237 TIGR01850 argC N-acetyl-gamma- 97.1 0.0016 3.6E-08 67.0 9.0 97 7-110 1-102 (346)
238 cd01076 NAD_bind_1_Glu_DH NAD( 97.1 0.0034 7.4E-08 60.7 10.4 115 6-130 31-157 (227)
239 PRK15076 alpha-galactosidase; 97.1 0.0028 6.1E-08 67.2 10.5 75 6-83 1-86 (431)
240 TIGR03215 ac_ald_DH_ac acetald 97.1 0.0045 9.7E-08 61.8 11.1 93 7-110 2-98 (285)
241 cd05294 LDH-like_MDH_nadp A la 97.1 0.0028 6.1E-08 64.3 9.8 103 7-114 1-128 (309)
242 PRK00961 H(2)-dependent methyl 97.1 0.03 6.6E-07 54.5 15.9 147 56-217 128-279 (342)
243 PRK08300 acetaldehyde dehydrog 97.0 0.0056 1.2E-07 61.4 11.3 95 6-110 4-104 (302)
244 PRK09496 trkA potassium transp 97.0 0.0089 1.9E-07 63.7 13.6 114 6-129 231-347 (453)
245 TIGR01723 hmd_TIGR 5,10-methen 97.0 0.031 6.6E-07 54.6 15.5 150 56-217 126-277 (340)
246 TIGR00561 pntA NAD(P) transhyd 97.0 0.0031 6.8E-08 67.7 9.6 100 7-109 165-286 (511)
247 PRK06349 homoserine dehydrogen 97.0 0.0032 7E-08 66.7 9.7 119 7-136 4-135 (426)
248 cd05311 NAD_bind_2_malic_enz N 97.0 0.0048 1E-07 59.7 10.1 106 7-127 26-145 (226)
249 COG0002 ArgC Acetylglutamate s 97.0 0.0027 5.8E-08 64.1 8.0 102 5-112 1-106 (349)
250 PRK10206 putative oxidoreducta 97.0 0.0081 1.7E-07 61.9 11.9 112 7-129 2-119 (344)
251 PRK04207 glyceraldehyde-3-phos 96.9 0.0074 1.6E-07 62.1 11.5 97 6-109 1-111 (341)
252 cd05191 NAD_bind_amino_acid_DH 96.9 0.0043 9.3E-08 50.4 7.7 62 7-107 24-86 (86)
253 PF13460 NAD_binding_10: NADH( 96.9 0.0055 1.2E-07 56.6 9.4 68 9-83 1-71 (183)
254 PRK02318 mannitol-1-phosphate 96.9 0.0029 6.3E-08 66.1 8.3 103 7-110 1-125 (381)
255 COG0169 AroE Shikimate 5-dehyd 96.9 0.0029 6.3E-08 63.0 7.7 117 7-130 127-247 (283)
256 PRK14175 bifunctional 5,10-met 96.9 0.0039 8.4E-08 62.1 8.4 74 7-110 159-233 (286)
257 PRK01710 murD UDP-N-acetylmura 96.8 0.019 4.1E-07 61.5 13.6 114 7-128 15-146 (458)
258 PRK14189 bifunctional 5,10-met 96.8 0.0037 8E-08 62.2 7.4 74 7-110 159-233 (285)
259 PLN02602 lactate dehydrogenase 96.8 0.016 3.5E-07 59.7 12.3 99 7-110 38-157 (350)
260 PF02629 CoA_binding: CoA bind 96.7 0.002 4.3E-08 53.5 4.4 79 7-95 4-84 (96)
261 COG0771 MurD UDP-N-acetylmuram 96.7 0.013 2.9E-07 61.9 11.4 124 5-136 6-147 (448)
262 PLN02968 Probable N-acetyl-gam 96.7 0.0034 7.4E-08 65.4 6.9 97 5-110 37-137 (381)
263 TIGR02717 AcCoA-syn-alpha acet 96.7 0.008 1.7E-07 64.2 9.7 107 7-131 8-127 (447)
264 PRK14106 murD UDP-N-acetylmura 96.7 0.024 5.1E-07 60.5 13.3 116 6-125 5-134 (450)
265 PRK09424 pntA NAD(P) transhydr 96.7 0.011 2.5E-07 63.6 10.7 44 7-50 166-209 (509)
266 PRK12548 shikimate 5-dehydroge 96.7 0.011 2.5E-07 59.3 10.1 120 7-129 127-256 (289)
267 cd01337 MDH_glyoxysomal_mitoch 96.6 0.0091 2E-07 60.5 9.3 97 7-110 1-120 (310)
268 PRK12475 thiamine/molybdopteri 96.6 0.017 3.7E-07 59.3 11.4 124 6-135 24-151 (338)
269 PRK06392 homoserine dehydrogen 96.6 0.0096 2.1E-07 60.7 9.4 129 7-138 1-149 (326)
270 PRK14027 quinate/shikimate deh 96.6 0.01 2.2E-07 59.4 9.2 119 7-130 128-250 (283)
271 PRK06718 precorrin-2 dehydroge 96.6 0.024 5.2E-07 53.9 11.3 79 7-94 11-91 (202)
272 PRK03369 murD UDP-N-acetylmura 96.6 0.041 8.8E-07 59.5 14.5 113 7-127 13-145 (488)
273 TIGR02356 adenyl_thiF thiazole 96.6 0.026 5.7E-07 53.5 11.5 123 7-135 22-146 (202)
274 cd05290 LDH_3 A subgroup of L- 96.6 0.026 5.6E-07 57.2 12.0 98 8-110 1-122 (307)
275 PF03447 NAD_binding_3: Homose 96.5 0.02 4.3E-07 49.1 9.6 104 13-128 1-114 (117)
276 PRK00141 murD UDP-N-acetylmura 96.5 0.038 8.1E-07 59.5 13.8 113 6-127 15-149 (473)
277 TIGR01772 MDH_euk_gproteo mala 96.5 0.0091 2E-07 60.6 8.5 96 8-110 1-119 (312)
278 TIGR01019 sucCoAalpha succinyl 96.5 0.027 5.8E-07 56.3 11.6 116 6-135 6-124 (286)
279 COG1064 AdhP Zn-dependent alco 96.5 0.017 3.6E-07 58.9 10.0 93 7-109 168-261 (339)
280 PRK12749 quinate/shikimate deh 96.5 0.016 3.4E-07 58.2 9.6 120 7-130 125-254 (288)
281 cd01487 E1_ThiF_like E1_ThiF_l 96.5 0.0091 2E-07 55.3 7.4 121 8-134 1-123 (174)
282 PTZ00325 malate dehydrogenase; 96.5 0.026 5.7E-07 57.4 11.3 106 5-114 7-132 (321)
283 PRK14874 aspartate-semialdehyd 96.5 0.0076 1.7E-07 61.8 7.5 92 6-110 1-97 (334)
284 PRK10792 bifunctional 5,10-met 96.4 0.01 2.2E-07 59.1 7.9 74 7-110 160-234 (285)
285 PRK05086 malate dehydrogenase; 96.4 0.025 5.5E-07 57.4 11.1 98 7-111 1-122 (312)
286 PRK00683 murD UDP-N-acetylmura 96.4 0.029 6.2E-07 59.4 12.0 110 7-126 4-129 (418)
287 PF00899 ThiF: ThiF family; I 96.4 0.004 8.7E-08 55.0 4.6 123 7-135 3-127 (135)
288 PRK06719 precorrin-2 dehydroge 96.4 0.027 5.9E-07 51.2 10.0 77 7-94 14-91 (157)
289 PRK08328 hypothetical protein; 96.4 0.022 4.8E-07 55.3 10.0 121 6-135 27-153 (231)
290 PRK00421 murC UDP-N-acetylmura 96.4 0.044 9.5E-07 58.8 13.0 112 5-126 6-134 (461)
291 PRK08374 homoserine dehydrogen 96.4 0.062 1.3E-06 55.2 13.4 128 6-138 2-155 (336)
292 PLN00106 malate dehydrogenase 96.3 0.02 4.2E-07 58.4 9.4 100 7-110 19-138 (323)
293 PRK05678 succinyl-CoA syntheta 96.3 0.041 8.8E-07 55.2 11.3 117 6-135 8-126 (291)
294 PRK14192 bifunctional 5,10-met 96.3 0.012 2.6E-07 58.8 7.4 73 7-109 160-233 (283)
295 PRK01390 murD UDP-N-acetylmura 96.3 0.06 1.3E-06 57.7 13.3 113 7-129 10-144 (460)
296 TIGR01470 cysG_Nterm siroheme 96.2 0.058 1.2E-06 51.4 11.5 73 7-90 10-86 (205)
297 cd01338 MDH_choloroplast_like 96.2 0.029 6.2E-07 57.3 10.0 98 7-109 3-130 (322)
298 PF00984 UDPG_MGDP_dh: UDP-glu 96.2 0.034 7.3E-07 46.2 8.5 88 183-290 3-90 (96)
299 PRK08644 thiamine biosynthesis 96.2 0.02 4.4E-07 54.8 8.2 120 7-132 29-150 (212)
300 PRK11861 bifunctional prephena 96.2 0.038 8.1E-07 62.2 11.5 99 76-181 1-112 (673)
301 PF02882 THF_DHG_CYH_C: Tetrah 96.2 0.017 3.7E-07 52.6 7.2 75 7-111 37-112 (160)
302 PRK15059 tartronate semialdehy 96.2 0.052 1.1E-06 54.6 11.5 105 326-445 163-267 (292)
303 PRK07688 thiamine/molybdopteri 96.1 0.027 5.8E-07 57.9 9.5 124 6-135 24-151 (339)
304 CHL00194 ycf39 Ycf39; Provisio 96.1 0.018 4E-07 58.4 8.2 70 7-81 1-73 (317)
305 PRK05671 aspartate-semialdehyd 96.1 0.014 3E-07 59.9 7.2 93 6-110 4-100 (336)
306 PRK07454 short chain dehydroge 96.1 0.036 7.8E-07 53.4 9.8 92 1-109 1-93 (241)
307 PRK05472 redox-sensing transcr 96.1 0.0083 1.8E-07 57.4 5.1 80 7-94 85-167 (213)
308 PRK03803 murD UDP-N-acetylmura 96.1 0.076 1.6E-06 56.7 13.0 120 8-136 8-145 (448)
309 TIGR01759 MalateDH-SF1 malate 96.1 0.092 2E-06 53.6 12.8 99 7-109 4-131 (323)
310 PRK14982 acyl-ACP reductase; P 96.1 0.018 3.8E-07 59.0 7.6 110 7-134 156-268 (340)
311 cd01485 E1-1_like Ubiquitin ac 96.1 0.029 6.2E-07 53.1 8.5 125 6-135 19-148 (198)
312 PRK05442 malate dehydrogenase; 96.0 0.072 1.6E-06 54.4 12.0 99 6-109 4-132 (326)
313 PLN02477 glutamate dehydrogena 96.0 0.048 1E-06 57.2 10.5 114 7-130 207-332 (410)
314 COG2344 AT-rich DNA-binding pr 96.0 0.018 3.8E-07 53.1 6.3 84 5-96 83-169 (211)
315 COG0460 ThrA Homoserine dehydr 96.0 0.058 1.3E-06 54.7 10.7 125 6-138 3-146 (333)
316 PF03720 UDPG_MGDP_dh_C: UDP-g 96.0 0.034 7.4E-07 47.0 7.7 86 17-110 18-104 (106)
317 PRK14191 bifunctional 5,10-met 95.9 0.031 6.6E-07 55.7 8.4 74 7-110 158-232 (285)
318 TIGR01087 murD UDP-N-acetylmur 95.9 0.093 2E-06 55.7 12.8 120 8-136 1-139 (433)
319 PF05368 NmrA: NmrA-like famil 95.9 0.026 5.6E-07 54.4 7.8 70 9-82 1-74 (233)
320 PRK09599 6-phosphogluconate de 95.9 0.015 3.3E-07 58.7 6.4 77 212-299 199-277 (301)
321 PRK09414 glutamate dehydrogena 95.9 0.05 1.1E-06 57.7 10.4 117 7-130 233-365 (445)
322 PRK11559 garR tartronate semia 95.9 0.074 1.6E-06 53.4 11.3 106 325-445 165-270 (296)
323 PRK02006 murD UDP-N-acetylmura 95.9 0.098 2.1E-06 56.7 13.0 117 6-128 7-150 (498)
324 PRK11863 N-acetyl-gamma-glutam 95.9 0.03 6.5E-07 56.7 8.1 82 5-110 1-84 (313)
325 PLN00112 malate dehydrogenase 95.9 0.083 1.8E-06 56.0 11.7 100 7-109 101-228 (444)
326 PRK02472 murD UDP-N-acetylmura 95.8 0.14 3.1E-06 54.5 13.6 115 7-128 6-137 (447)
327 PLN02383 aspartate semialdehyd 95.8 0.028 6.1E-07 57.8 7.7 91 5-110 6-103 (344)
328 PRK12550 shikimate 5-dehydroge 95.7 0.057 1.2E-06 53.7 9.5 109 7-130 123-237 (272)
329 cd01492 Aos1_SUMO Ubiquitin ac 95.7 0.045 9.6E-07 51.8 8.3 123 6-135 21-145 (197)
330 COG0039 Mdh Malate/lactate deh 95.7 0.054 1.2E-06 54.6 9.3 98 7-110 1-121 (313)
331 cd05212 NAD_bind_m-THF_DH_Cycl 95.7 0.054 1.2E-06 48.3 8.4 74 7-110 29-103 (140)
332 PRK01438 murD UDP-N-acetylmura 95.7 0.13 2.8E-06 55.4 12.9 112 7-127 17-150 (480)
333 PRK14176 bifunctional 5,10-met 95.7 0.037 8E-07 55.1 7.8 73 7-109 165-238 (287)
334 cd01079 NAD_bind_m-THF_DH NAD 95.6 0.032 7E-07 52.2 6.7 89 7-110 63-159 (197)
335 TIGR01082 murC UDP-N-acetylmur 95.6 0.15 3.2E-06 54.5 12.8 109 8-126 1-126 (448)
336 cd00704 MDH Malate dehydrogena 95.6 0.066 1.4E-06 54.6 9.6 99 8-109 2-128 (323)
337 PRK08223 hypothetical protein; 95.6 0.055 1.2E-06 54.0 8.7 125 6-135 27-154 (287)
338 PRK07326 short chain dehydroge 95.6 0.082 1.8E-06 50.7 9.7 42 6-47 6-48 (237)
339 cd01336 MDH_cytoplasmic_cytoso 95.5 0.082 1.8E-06 54.0 10.0 97 7-108 3-129 (325)
340 TIGR02355 moeB molybdopterin s 95.5 0.048 1E-06 53.2 7.9 123 7-135 25-149 (240)
341 PRK14183 bifunctional 5,10-met 95.5 0.043 9.4E-07 54.5 7.6 74 7-110 158-232 (281)
342 PRK13394 3-hydroxybutyrate deh 95.5 0.076 1.7E-06 51.7 9.5 84 7-109 8-94 (262)
343 cd00757 ThiF_MoeB_HesA_family 95.5 0.048 1E-06 52.8 7.8 124 6-135 21-146 (228)
344 cd05313 NAD_bind_2_Glu_DH NAD( 95.5 0.21 4.5E-06 49.1 12.2 117 7-130 39-175 (254)
345 PRK05884 short chain dehydroge 95.5 0.16 3.5E-06 48.6 11.4 42 7-48 1-43 (223)
346 PRK08664 aspartate-semialdehyd 95.5 0.06 1.3E-06 55.6 8.8 97 6-110 3-110 (349)
347 PRK08265 short chain dehydroge 95.4 0.13 2.8E-06 50.4 10.7 88 1-108 1-89 (261)
348 PRK10537 voltage-gated potassi 95.4 0.21 4.6E-06 52.4 12.7 113 7-132 241-356 (393)
349 PRK04308 murD UDP-N-acetylmura 95.4 0.26 5.7E-06 52.5 13.8 114 7-128 6-139 (445)
350 TIGR01757 Malate-DH_plant mala 95.3 0.16 3.5E-06 52.9 11.4 100 7-109 45-172 (387)
351 PRK14173 bifunctional 5,10-met 95.3 0.061 1.3E-06 53.6 8.0 74 7-110 156-230 (287)
352 PF02056 Glyco_hydro_4: Family 95.3 0.089 1.9E-06 49.0 8.5 73 8-83 1-84 (183)
353 TIGR01771 L-LDH-NAD L-lactate 95.3 0.12 2.5E-06 52.3 10.1 95 11-109 1-115 (299)
354 PRK14186 bifunctional 5,10-met 95.3 0.064 1.4E-06 53.8 7.9 74 7-110 159-233 (297)
355 PRK07774 short chain dehydroge 95.3 0.12 2.6E-06 50.0 9.8 87 6-109 6-93 (250)
356 PRK14170 bifunctional 5,10-met 95.3 0.068 1.5E-06 53.2 8.0 74 7-110 158-232 (284)
357 TIGR00978 asd_EA aspartate-sem 95.2 0.071 1.5E-06 54.9 8.5 97 7-110 1-107 (341)
358 PLN02520 bifunctional 3-dehydr 95.2 0.13 2.7E-06 56.3 10.8 113 7-129 380-495 (529)
359 PRK14177 bifunctional 5,10-met 95.2 0.071 1.5E-06 53.1 8.0 74 7-110 160-234 (284)
360 TIGR03649 ergot_EASG ergot alk 95.2 0.075 1.6E-06 52.8 8.4 35 8-42 1-36 (285)
361 PRK10538 malonic semialdehyde 95.2 0.14 3.1E-06 49.6 10.2 82 7-108 1-83 (248)
362 PRK14172 bifunctional 5,10-met 95.2 0.066 1.4E-06 53.1 7.7 74 7-110 159-233 (278)
363 PRK00676 hemA glutamyl-tRNA re 95.2 0.054 1.2E-06 55.3 7.2 35 6-40 174-209 (338)
364 COG2084 MmsB 3-hydroxyisobutyr 95.1 0.23 4.9E-06 49.6 11.3 105 325-445 164-269 (286)
365 PRK14169 bifunctional 5,10-met 95.1 0.071 1.5E-06 53.0 7.7 74 7-110 157-231 (282)
366 PRK05690 molybdopterin biosynt 95.1 0.12 2.6E-06 50.6 9.3 123 6-134 32-156 (245)
367 PRK14178 bifunctional 5,10-met 95.1 0.07 1.5E-06 53.0 7.6 74 7-110 153-227 (279)
368 COG0300 DltE Short-chain dehyd 95.1 0.12 2.6E-06 51.0 9.2 87 5-107 5-92 (265)
369 PRK12939 short chain dehydroge 95.1 0.14 3E-06 49.4 9.7 86 7-109 8-94 (250)
370 PRK02705 murD UDP-N-acetylmura 95.1 0.25 5.3E-06 52.9 12.5 115 8-127 2-137 (459)
371 PF10100 DUF2338: Uncharacteri 95.1 1.3 2.8E-05 45.9 16.7 159 6-169 1-196 (429)
372 PRK11908 NAD-dependent epimera 95.1 0.13 2.9E-06 52.6 10.1 40 6-45 1-42 (347)
373 PRK08762 molybdopterin biosynt 95.1 0.17 3.6E-06 52.9 10.8 124 6-135 135-260 (376)
374 TIGR01546 GAPDH-II_archae glyc 95.1 0.13 2.9E-06 52.4 9.7 39 9-47 1-41 (333)
375 PRK07236 hypothetical protein; 95.1 0.03 6.6E-07 58.4 5.3 40 1-40 1-40 (386)
376 PLN00141 Tic62-NAD(P)-related 95.0 0.06 1.3E-06 52.5 7.0 40 6-45 17-57 (251)
377 PRK14180 bifunctional 5,10-met 95.0 0.079 1.7E-06 52.7 7.7 74 7-110 159-233 (282)
378 PRK14166 bifunctional 5,10-met 95.0 0.082 1.8E-06 52.6 7.8 74 7-110 158-232 (282)
379 PRK08017 oxidoreductase; Provi 95.0 0.17 3.7E-06 49.1 10.1 40 7-46 3-43 (256)
380 TIGR01296 asd_B aspartate-semi 95.0 0.047 1E-06 56.1 6.3 89 8-109 1-94 (339)
381 PRK03806 murD UDP-N-acetylmura 95.0 0.41 8.9E-06 50.9 13.7 114 6-128 6-134 (438)
382 PRK05653 fabG 3-ketoacyl-(acyl 95.0 0.16 3.5E-06 48.6 9.8 84 7-109 6-92 (246)
383 PRK06728 aspartate-semialdehyd 94.9 0.077 1.7E-06 54.5 7.6 94 1-110 1-102 (347)
384 TIGR01851 argC_other N-acetyl- 94.9 0.11 2.3E-06 52.5 8.5 81 7-110 2-83 (310)
385 PRK14190 bifunctional 5,10-met 94.9 0.086 1.9E-06 52.5 7.7 74 7-110 159-233 (284)
386 TIGR01505 tartro_sem_red 2-hyd 94.9 0.25 5.4E-06 49.5 11.3 105 326-445 163-267 (291)
387 TIGR01758 MDH_euk_cyt malate d 94.9 0.12 2.6E-06 52.7 9.1 99 8-109 1-127 (324)
388 PRK14030 glutamate dehydrogena 94.9 0.19 4.2E-06 53.1 10.7 117 7-130 229-365 (445)
389 PRK14187 bifunctional 5,10-met 94.9 0.086 1.9E-06 52.7 7.7 74 7-110 161-235 (294)
390 PRK01368 murD UDP-N-acetylmura 94.9 0.31 6.7E-06 52.2 12.5 122 5-135 5-140 (454)
391 COG0289 DapB Dihydrodipicolina 94.9 0.29 6.3E-06 47.9 11.0 108 6-124 2-117 (266)
392 PRK05597 molybdopterin biosynt 94.9 0.26 5.7E-06 51.0 11.5 124 6-135 28-153 (355)
393 PRK12409 D-amino acid dehydrog 94.9 0.031 6.7E-07 58.8 4.8 33 7-39 2-34 (410)
394 PRK05993 short chain dehydroge 94.9 0.18 3.9E-06 49.9 9.9 41 6-46 4-45 (277)
395 PRK07523 gluconate 5-dehydroge 94.9 0.19 4.1E-06 48.9 10.0 86 7-109 11-97 (255)
396 TIGR03736 PRTRC_ThiF PRTRC sys 94.9 0.19 4E-06 49.1 9.7 34 6-39 11-55 (244)
397 cd05298 GH4_GlvA_pagL_like Gly 94.9 0.22 4.8E-06 52.9 11.1 74 7-83 1-85 (437)
398 PRK12828 short chain dehydroge 94.9 0.26 5.6E-06 47.0 10.8 84 7-109 8-92 (239)
399 PLN02516 methylenetetrahydrofo 94.8 0.096 2.1E-06 52.5 7.8 74 7-110 168-242 (299)
400 TIGR01692 HIBADH 3-hydroxyisob 94.8 0.24 5.1E-06 49.7 10.7 108 325-445 159-271 (288)
401 PRK06180 short chain dehydroge 94.8 0.2 4.4E-06 49.5 10.1 83 7-109 5-88 (277)
402 PRK14573 bifunctional D-alanyl 94.8 0.3 6.5E-06 56.2 12.7 110 7-126 5-131 (809)
403 PLN03209 translocon at the inn 94.8 0.57 1.2E-05 51.2 14.0 74 8-81 82-168 (576)
404 PRK07074 short chain dehydroge 94.7 0.26 5.6E-06 47.9 10.6 84 7-109 3-87 (257)
405 PRK06182 short chain dehydroge 94.7 0.25 5.5E-06 48.6 10.6 80 7-109 4-84 (273)
406 PRK07024 short chain dehydroge 94.7 0.15 3.3E-06 49.7 8.9 86 6-109 2-88 (257)
407 PRK07067 sorbitol dehydrogenas 94.7 0.25 5.5E-06 48.0 10.5 82 7-108 7-89 (257)
408 PRK08163 salicylate hydroxylas 94.7 0.039 8.4E-07 57.6 4.9 35 6-40 4-38 (396)
409 PLN00016 RNA-binding protein; 94.7 0.14 3E-06 53.3 9.1 37 5-41 51-92 (378)
410 PRK14171 bifunctional 5,10-met 94.7 0.1 2.2E-06 52.1 7.5 74 7-110 160-234 (288)
411 PRK12826 3-ketoacyl-(acyl-carr 94.7 0.17 3.7E-06 48.7 9.2 44 3-46 3-47 (251)
412 PRK15461 NADH-dependent gamma- 94.7 0.25 5.3E-06 49.8 10.5 104 325-444 164-269 (296)
413 PRK12936 3-ketoacyl-(acyl-carr 94.7 0.27 5.9E-06 47.2 10.5 89 1-109 1-90 (245)
414 PRK04690 murD UDP-N-acetylmura 94.7 0.44 9.5E-06 51.3 13.0 112 6-126 8-142 (468)
415 PRK14182 bifunctional 5,10-met 94.7 0.11 2.4E-06 51.6 7.7 74 7-110 158-232 (282)
416 PRK14193 bifunctional 5,10-met 94.7 0.12 2.5E-06 51.6 7.8 74 7-110 159-235 (284)
417 PRK14852 hypothetical protein; 94.6 0.12 2.6E-06 59.4 8.9 125 6-135 332-459 (989)
418 PRK07877 hypothetical protein; 94.6 0.11 2.5E-06 58.3 8.6 124 6-136 107-232 (722)
419 PRK06200 2,3-dihydroxy-2,3-dih 94.6 0.31 6.6E-06 47.7 10.8 83 7-109 7-90 (263)
420 PRK14851 hypothetical protein; 94.6 0.13 2.8E-06 57.6 8.9 125 6-135 43-170 (679)
421 PRK05693 short chain dehydroge 94.6 0.27 5.9E-06 48.4 10.5 80 7-109 2-82 (274)
422 PRK08309 short chain dehydroge 94.6 0.43 9.2E-06 44.3 11.0 101 7-127 1-101 (177)
423 PRK06153 hypothetical protein; 94.5 0.25 5.3E-06 51.2 10.1 33 7-39 177-210 (393)
424 PRK12825 fabG 3-ketoacyl-(acyl 94.5 0.23 5E-06 47.5 9.6 91 1-108 1-93 (249)
425 PRK06482 short chain dehydroge 94.5 0.28 6E-06 48.4 10.3 83 7-109 3-86 (276)
426 PRK06500 short chain dehydroge 94.5 0.32 6.9E-06 46.9 10.6 40 7-46 7-47 (249)
427 PRK08340 glucose-1-dehydrogena 94.5 0.3 6.5E-06 47.7 10.5 84 7-108 1-85 (259)
428 PRK06194 hypothetical protein; 94.5 0.3 6.5E-06 48.4 10.5 90 1-109 1-93 (287)
429 TIGR02964 xanthine_xdhC xanthi 94.5 0.41 8.9E-06 46.9 11.1 111 7-126 101-212 (246)
430 PRK07878 molybdopterin biosynt 94.4 0.16 3.5E-06 53.3 8.7 124 6-135 42-167 (392)
431 PRK06079 enoyl-(acyl carrier p 94.4 0.27 5.8E-06 48.0 9.8 88 1-108 1-92 (252)
432 PRK08040 putative semialdehyde 94.4 0.079 1.7E-06 54.3 6.2 92 6-110 4-100 (336)
433 cd05197 GH4_glycoside_hydrolas 94.4 0.49 1.1E-05 50.2 12.3 74 7-83 1-85 (425)
434 PRK12429 3-hydroxybutyrate deh 94.4 0.23 4.9E-06 48.1 9.2 86 7-109 5-91 (258)
435 COG1486 CelF Alpha-galactosida 94.4 0.34 7.3E-06 51.0 10.8 111 6-122 3-161 (442)
436 PRK06139 short chain dehydroge 94.4 0.27 5.8E-06 50.3 10.1 84 7-109 8-94 (330)
437 PRK06505 enoyl-(acyl carrier p 94.4 0.32 6.9E-06 48.1 10.4 90 1-109 1-95 (271)
438 PRK07478 short chain dehydroge 94.4 0.27 5.9E-06 47.7 9.7 86 7-109 7-93 (254)
439 PLN02897 tetrahydrofolate dehy 94.3 0.13 2.9E-06 52.3 7.5 74 7-110 215-289 (345)
440 PLN02616 tetrahydrofolate dehy 94.3 0.14 2.9E-06 52.5 7.6 74 7-110 232-306 (364)
441 PRK08267 short chain dehydroge 94.3 0.37 7.9E-06 47.0 10.6 84 7-109 2-87 (260)
442 PRK08773 2-octaprenyl-3-methyl 94.3 0.056 1.2E-06 56.4 5.1 40 1-40 1-40 (392)
443 PLN02353 probable UDP-glucose 94.3 0.35 7.5E-06 52.0 11.1 116 7-132 325-466 (473)
444 PRK08643 acetoin reductase; Va 94.3 0.27 5.8E-06 47.8 9.5 86 7-109 3-89 (256)
445 cd05296 GH4_P_beta_glucosidase 94.3 0.61 1.3E-05 49.4 12.7 73 7-82 1-85 (419)
446 PRK14181 bifunctional 5,10-met 94.3 0.16 3.4E-06 50.7 7.7 74 7-110 154-232 (287)
447 COG2227 UbiG 2-polyprenyl-3-me 94.2 0.3 6.5E-06 47.1 9.3 94 7-106 61-160 (243)
448 PRK08306 dipicolinate synthase 94.2 0.21 4.6E-06 50.3 8.8 108 7-132 3-121 (296)
449 COG0026 PurK Phosphoribosylami 94.2 0.07 1.5E-06 54.5 5.2 68 6-82 1-75 (375)
450 COG0499 SAM1 S-adenosylhomocys 94.2 0.14 3.1E-06 51.9 7.3 87 7-108 210-297 (420)
451 PRK08589 short chain dehydroge 94.2 0.35 7.6E-06 47.7 10.2 91 1-109 1-92 (272)
452 PRK07063 short chain dehydroge 94.2 0.29 6.3E-06 47.7 9.6 87 8-109 9-96 (260)
453 PRK05866 short chain dehydroge 94.1 0.29 6.3E-06 49.0 9.6 86 7-109 41-127 (293)
454 KOG1502 Flavonol reductase/cin 94.1 0.36 7.8E-06 48.9 10.0 77 1-80 1-86 (327)
455 PRK12829 short chain dehydroge 94.1 0.36 7.8E-06 47.0 10.0 85 7-110 12-97 (264)
456 PRK06124 gluconate 5-dehydroge 94.1 0.36 7.7E-06 46.9 9.9 86 7-109 12-98 (256)
457 KOG1683 Hydroxyacyl-CoA dehydr 94.0 0.2 4.4E-06 51.0 8.1 187 17-227 1-208 (380)
458 PRK00711 D-amino acid dehydrog 94.0 0.06 1.3E-06 56.6 4.7 34 7-40 1-34 (416)
459 PRK06598 aspartate-semialdehyd 94.0 0.14 3E-06 53.1 7.0 94 6-110 1-101 (369)
460 PRK05868 hypothetical protein; 94.0 0.061 1.3E-06 55.9 4.6 35 6-40 1-35 (372)
461 TIGR03325 BphB_TodD cis-2,3-di 93.9 0.46 1E-05 46.4 10.5 40 7-46 6-46 (262)
462 PRK06057 short chain dehydroge 93.9 0.46 1E-05 46.2 10.4 80 7-108 8-88 (255)
463 PF00208 ELFV_dehydrog: Glutam 93.9 0.22 4.9E-06 48.7 8.0 116 7-130 33-168 (244)
464 PRK15116 sulfur acceptor prote 93.9 0.49 1.1E-05 46.9 10.4 122 6-132 30-153 (268)
465 PRK07109 short chain dehydroge 93.9 0.39 8.4E-06 49.2 10.2 84 7-109 9-95 (334)
466 PRK06185 hypothetical protein; 93.9 0.078 1.7E-06 55.6 5.1 40 1-40 1-40 (407)
467 PRK03815 murD UDP-N-acetylmura 93.9 0.39 8.4E-06 50.6 10.3 108 7-126 1-116 (401)
468 PF13450 NAD_binding_8: NAD(P) 93.9 0.09 1.9E-06 40.6 4.1 30 11-40 1-30 (68)
469 PRK06753 hypothetical protein; 93.9 0.069 1.5E-06 55.2 4.6 34 7-40 1-34 (373)
470 PRK07890 short chain dehydroge 93.8 0.33 7.2E-06 47.1 9.2 86 7-109 6-92 (258)
471 PRK05876 short chain dehydroge 93.8 0.36 7.8E-06 47.8 9.5 90 1-109 1-93 (275)
472 PRK04663 murD UDP-N-acetylmura 93.8 0.95 2.1E-05 48.2 13.3 113 7-129 8-138 (438)
473 COG0190 FolD 5,10-methylene-te 93.8 0.18 3.9E-06 49.9 7.0 75 7-111 157-232 (283)
474 PF00070 Pyr_redox: Pyridine n 93.8 0.1 2.3E-06 41.3 4.5 33 8-40 1-33 (80)
475 PRK07453 protochlorophyllide o 93.8 0.37 8.1E-06 48.8 9.7 91 1-108 1-92 (322)
476 PRK14168 bifunctional 5,10-met 93.8 0.22 4.9E-06 49.9 7.8 74 7-110 162-240 (297)
477 COG1648 CysG Siroheme synthase 93.7 1 2.2E-05 43.0 11.8 79 7-93 13-92 (210)
478 PRK05600 thiamine biosynthesis 93.7 0.23 5E-06 51.7 8.1 123 7-135 42-166 (370)
479 PRK14185 bifunctional 5,10-met 93.7 0.23 5E-06 49.7 7.7 74 7-110 158-236 (293)
480 PF03059 NAS: Nicotianamine sy 93.7 0.3 6.6E-06 48.5 8.4 99 7-108 122-231 (276)
481 PRK11728 hydroxyglutarate oxid 93.6 0.081 1.8E-06 55.3 4.7 34 6-39 2-37 (393)
482 PF00289 CPSase_L_chain: Carba 93.6 0.71 1.5E-05 39.3 9.6 99 6-132 2-106 (110)
483 PRK06947 glucose-1-dehydrogena 93.6 0.41 8.8E-06 46.2 9.3 88 5-109 1-90 (248)
484 cd01491 Ube1_repeat1 Ubiquitin 93.6 0.16 3.4E-06 50.9 6.3 120 6-135 19-140 (286)
485 cd00755 YgdL_like Family of ac 93.5 0.42 9.1E-06 46.4 9.1 126 6-136 11-138 (231)
486 PF01494 FAD_binding_3: FAD bi 93.5 0.078 1.7E-06 53.7 4.3 34 7-40 2-35 (356)
487 COG0334 GdhA Glutamate dehydro 93.5 0.41 8.8E-06 49.8 9.3 114 7-130 208-333 (411)
488 TIGR03855 NAD_NadX aspartate d 93.5 0.66 1.4E-05 44.9 10.3 93 32-136 5-101 (229)
489 TIGR03466 HpnA hopanoid-associ 93.5 0.12 2.6E-06 52.0 5.5 71 7-81 1-73 (328)
490 COG4091 Predicted homoserine d 93.5 1.9 4.1E-05 43.9 13.5 42 7-48 18-61 (438)
491 COG1063 Tdh Threonine dehydrog 93.4 0.45 9.8E-06 49.1 9.8 94 8-109 171-271 (350)
492 PRK08213 gluconate 5-dehydroge 93.4 0.45 9.7E-06 46.3 9.3 86 7-109 13-99 (259)
493 TIGR01963 PHB_DH 3-hydroxybuty 93.4 0.43 9.3E-06 46.1 9.1 85 7-108 2-87 (255)
494 TIGR03366 HpnZ_proposed putati 93.4 0.53 1.2E-05 46.7 9.9 43 7-49 122-165 (280)
495 PRK05872 short chain dehydroge 93.4 0.76 1.7E-05 46.0 11.1 83 7-109 10-95 (296)
496 PRK06019 phosphoribosylaminoim 93.4 0.15 3.4E-06 53.0 6.2 36 6-41 2-37 (372)
497 PRK05786 fabG 3-ketoacyl-(acyl 93.3 0.5 1.1E-05 45.2 9.4 41 7-47 6-47 (238)
498 PRK06172 short chain dehydroge 93.3 0.57 1.2E-05 45.3 9.9 41 7-47 8-49 (253)
499 PRK05867 short chain dehydroge 93.3 0.49 1.1E-05 45.9 9.3 41 7-47 10-51 (253)
500 cd01489 Uba2_SUMO Ubiquitin ac 93.3 0.37 7.9E-06 48.9 8.5 123 8-135 1-125 (312)
No 1
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.4e-132 Score=976.28 Aligned_cols=469 Identities=58% Similarity=0.955 Sum_probs=452.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
.+.||+||+|+||++||+|++++||+|.+|||++++++++.++..... ++.++.|++|+++.|++|+.|+++|..+.+
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k--~i~~~~sieefV~~Le~PRkI~lMVkAG~~ 80 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGK--NIVPAYSIEEFVASLEKPRKILLMVKAGTP 80 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCC--CccccCcHHHHHHHhcCCceEEEEEecCCc
Confidence 468999999999999999999999999999999999999998755321 688999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHH
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKV 165 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~~i~~gg~~~a~~~v~~ll~~i 165 (503)
|+.++++|+|+|.+||||||.+|+.+.+|.|+.+.|.++|++|++++||||++||++||+||+||++++|+.++|+|++|
T Consensus 81 VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPSiMpGG~~eay~~v~pil~~I 160 (473)
T COG0362 81 VDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPSIMPGGQKEAYELVAPILTKI 160 (473)
T ss_pred HHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCCcCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhcc
Q 010702 166 AAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFK 245 (503)
Q Consensus 166 g~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~ 245 (503)
++|.++++||.|+|+.|+|||||||||+|||+.||+|+|+|.+++...|++.+++.++|.+||++.++|||++|+.++|+
T Consensus 161 aAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~~WN~geL~SYLIeIT~~IL~ 240 (473)
T COG0362 161 AAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITADILR 240 (473)
T ss_pred HhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccCcchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999997779999999999999999999999999999999
Q ss_pred ccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCccccccccccc
Q 010702 246 VKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHV 325 (503)
Q Consensus 246 ~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 325 (503)
.+|+.++.+++|.|+|.++|||||||+++.|.++|+|+|+|.+||++|++|+.|++|+++++.|++|... .++
T Consensus 241 ~kD~~~~kplvd~ILD~AgQKGTGkWt~~~AldlGvP~t~I~eaVfAR~lSs~K~eR~~Ask~l~~~~~~-------~~~ 313 (473)
T COG0362 241 KKDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITEAVFARYLSSLKDERVAASKVLAGPKLG-------EPG 313 (473)
T ss_pred hcCcccCCchHHHHHHHhcCCCcchhhHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHHHHHhhcCCCCCC-------CCC
Confidence 9887666699999999999999999999999999999999999999999999999999999999888642 367
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcchhh
Q 010702 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPE 405 (503)
Q Consensus 326 ~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~~~~ 405 (503)
++..|+++|++|+|+++|++|||||.+|+++|++|+|++++.+|++|||+||||||.||+.|+++|.++|++.|||++++
T Consensus 314 dk~~fi~~vr~ALy~sKI~sYAQGF~~l~~AS~e~gW~l~~~~iA~iWR~GCIIRs~FL~~I~~af~~~p~l~nLl~~py 393 (473)
T COG0362 314 DKEEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGEIALIWRGGCIIRSKFLDKITDAFDENPELANLLLAPY 393 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhccceehHHHHHHHHHHHhcCcchhhhhcCHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCCcchhHHHhhhhhcCCccccccCCCCcccccccCCC
Q 010702 406 FAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTKLP 483 (503)
Q Consensus 406 ~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~~~~~~~~~iqa~rd~fG~H~~~r~d~~~~~h~~w~~~~ 483 (503)
|...+++.+++||++|..|++.|||+|++|+||+|||+||++++|+|||||||||||||||+|+|++|.||++|++.+
T Consensus 394 F~~~~~~~~~~~R~vV~~a~~~giP~P~~ssalsy~Dsyr~~~lpaNLiQAQRDyFGAHtyeR~D~~~~fHt~W~~~~ 471 (473)
T COG0362 394 FKSILEEYQQSLRRVVAYAVEAGIPVPAFSSALSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTNWTGGG 471 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhhccccHHHHHHHHHhhcccceeecCCCCccccCccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998643
No 2
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.6e-124 Score=902.01 Aligned_cols=479 Identities=61% Similarity=0.998 Sum_probs=453.8
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 1 M~~~~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
|+....++||+|||++||.+|++|++++||.|++|||+..+++++.+..... +.+.++.|+++++..|++|++|++.|
T Consensus 1 m~q~~~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~--~~i~ga~S~ed~v~klk~PR~iillv 78 (487)
T KOG2653|consen 1 MSQTPKADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKG--TKIIGAYSLEDFVSKLKKPRVIILLV 78 (487)
T ss_pred CCCccccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcC--CcccCCCCHHHHHHhcCCCcEEEEEe
Confidence 4444457899999999999999999999999999999999999998765431 35788999999999999999999999
Q ss_pred CCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCCcccCCCCHHHHHHHHH
Q 010702 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRD 160 (503)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~~i~~gg~~~a~~~v~~ 160 (503)
+.+.+|+..+++|.|+|.+||+|||.+|+.+.+|.++.+.+.++|+-|++++||||+++||.||++|+||++++|+.+++
T Consensus 79 kAG~pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPSlMpGg~~~Awp~ik~ 158 (487)
T KOG2653|consen 79 KAGAPVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPSLMPGGSKEAWPHIKD 158 (487)
T ss_pred eCCCcHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCccCCCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccc-CCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhh
Q 010702 161 ILQKVAAQV-DDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEI 239 (503)
Q Consensus 161 ll~~ig~~~-~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~ 239 (503)
+|+.+++++ ++++||.|+|+.|+|||||||||+|+|+.||+|+|+|.++++.+|++.+++.++|.+||.+.+.|||++|
T Consensus 159 ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~vF~~WN~geleSfLieI 238 (487)
T KOG2653|consen 159 IFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDDWNKGELESFLIEI 238 (487)
T ss_pred HHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHHHHhhcccchhHHHHHH
Confidence 999999997 7799999999999999999999999999999999999999997779999999999999999999999999
Q ss_pred hhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCccccc
Q 010702 240 TADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQ 319 (503)
Q Consensus 240 ~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~ 319 (503)
+.+|++-+|+. +.++++.|+|.++|||||+|+++.|.++|+|+|+|.+||++||+|++|++|+.+++.+++|..+.
T Consensus 239 T~dIlk~~d~~-G~~lv~kI~D~aGqKGTGkwt~~~Ale~g~Pv~lI~eavfaRclS~lKdeR~~ask~L~gp~~~~--- 314 (487)
T KOG2653|consen 239 TADILKFKDED-GKPLVDKILDKAGQKGTGKWTVISALELGVPVTLIGEAVFARCLSALKDERVRASKVLKGPGVKR--- 314 (487)
T ss_pred hHHHhheeccC-CChHHHHHHhhhcCCCccHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCch---
Confidence 99999987654 44899999999999999999999999999999999999999999999999999999999986532
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCC
Q 010702 320 NVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLAS 399 (503)
Q Consensus 320 ~~~~~~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ 399 (503)
....+...|++++++|+|+++|++|+|||+||++++++++|++|+.+|+.+||+||||||.||+.|.++|+++|+|.|
T Consensus 315 --~~~~~k~~~~dd~r~alYaskiiSyaQGfmLlr~aa~e~gW~ln~~~iAlmWrgGCIIRsvfL~~I~~a~~~~p~l~n 392 (487)
T KOG2653|consen 315 --DMGDDKKQFLDDIRQALYASKIISYAQGFMLLREAAKEKGWKLNNGGIALMWRGGCIIRSVFLDRIKKAYQRNPDLAN 392 (487)
T ss_pred --hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHcCCeEeeHHHHHHHHHHHhcCccHhh
Confidence 233357889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCCcchhHHHhhhhhcCCccccccCCCC-ccccc
Q 010702 400 LVVDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPG-SFHTE 478 (503)
Q Consensus 400 ll~~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~~~~~~~~~iqa~rd~fG~H~~~r~d~~~-~~h~~ 478 (503)
+|+|+.|.+++.+.+.+||++|..|+++|||+|++|+||.|||+||++++|+||+||||||||||||++++++| .+|++
T Consensus 393 ll~d~fF~~~v~~~q~~wr~vV~~a~~~gIptP~~st~Lafydgyr~e~lpaNllQAqRDYFGAHtye~l~~~~~~~Htn 472 (487)
T KOG2653|consen 393 LLLDPFFAKAVEEAQDSWRRVVALAVEAGIPTPAFSTALAFYDGYRSERLPANLLQAQRDYFGAHTYELLGEPGKAIHTN 472 (487)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhhhhcCcHHHHHHHHHhhccceeeecCCCcceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 79999
Q ss_pred ccCCCCCcc
Q 010702 479 WTKLPARLV 487 (503)
Q Consensus 479 w~~~~~~~~ 487 (503)
|++.+.+.+
T Consensus 473 Wtg~gg~~s 481 (487)
T KOG2653|consen 473 WTGHGGNVS 481 (487)
T ss_pred ecccCCccc
Confidence 998655543
No 3
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=100.00 E-value=2.6e-114 Score=909.52 Aligned_cols=469 Identities=60% Similarity=1.017 Sum_probs=439.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
|++|||||+|.||.+||++|+++||+|++|||++++++++.+.+...| ..+..+.+++++++.++++|+||+|||++.+
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g-~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~ 79 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGN-TRVKGYHTLEELVNSLKKPRKVILLIKAGEA 79 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcC-CcceecCCHHHHHhcCCCCCEEEEEeCChHH
Confidence 358999999999999999999999999999999999999987532211 1255788999999987779999999999999
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHH
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKV 165 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~~i~~gg~~~a~~~v~~ll~~i 165 (503)
++++++++.+.+.+|++|||+||+.+.++.++.+.+.++|++|+++|||||+++|+.|+++|+||+++++++++|+|+.+
T Consensus 80 v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~~lm~GG~~~a~~~~~piL~~i 159 (470)
T PTZ00142 80 VDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGPSLMPGGNKEAYDHVKDILEKC 159 (470)
T ss_pred HHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCCEEEEeCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhc
Q 010702 166 AAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLK-HVGGLSNAELAEIFDEWNKGELESFLVEITADIF 244 (503)
Q Consensus 166 g~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~-~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l 244 (503)
+++.++++|++|+|+.|+||++||+||+++|++|++++|++.|++ +.| ++++++.++|..|+.|.+.||+++++.+++
T Consensus 160 a~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~g-l~~~~l~~v~~~w~~g~~~S~l~ei~~~~~ 238 (470)
T PTZ00142 160 SAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILG-MSNEELSEVFNKWNEGILNSYLIEITAKIL 238 (470)
T ss_pred hhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 988777789999999999999999999999999999999999998 577 999999999999999999999999999999
Q ss_pred cccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCcccccccccc
Q 010702 245 KVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVH 324 (503)
Q Consensus 245 ~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 324 (503)
.++|+.++++.+|.|.|.++|||||+|++++|.++|||+|+|.+||++|++|.+|++|..+++.|.+|..... ...
T Consensus 239 ~~~d~~~~~~~l~~i~d~~~~~gtg~wt~~~a~~~~v~~p~i~~a~~~R~~S~~k~~r~~~~~~~~gp~~~~~----~~~ 314 (470)
T PTZ00142 239 AKKDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVPTMAASVDARNISALKEERTKASSHLAGPNPANK----TET 314 (470)
T ss_pred hcccccCCCcchhhhcCcccCCchHHhHHHHHHHcCCCchHHHHHHHHHHhhhhHHHHHHhccccCCCccccc----ccc
Confidence 9876533258999999999999999999999999999999999999999999999999999999987641100 112
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcchh
Q 010702 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDP 404 (503)
Q Consensus 325 ~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~~~ 404 (503)
.+++||+||||||||||+|++|+|||+||++++++|+|++|+.+|+++||+||||||+||+.|.++|+++|++.|||+++
T Consensus 315 ~~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~y~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~ 394 (470)
T PTZ00142 315 EDKKYFIDDLKNALYCSKIISYTQGFFLIKEASKEFGWNLNLGEIARIWRGGCIIRAVFLDRIKNAFKKNPQLDLLFLDP 394 (470)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHhcCCChhhhcCCH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCCcchhHHHhhhhhcCCccccccCCCCccccccc
Q 010702 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480 (503)
Q Consensus 405 ~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~~~~~~~~~iqa~rd~fG~H~~~r~d~~~~~h~~w~ 480 (503)
.|...+++..++|||+|..|++.|+|+|+||+||+||++++++++|+|+|||||||||+|||+|+|++|.||++|+
T Consensus 395 ~~~~~i~~~~~~~R~vV~~a~~~gip~P~~s~aL~y~~s~~~~~~~anliqaqRd~FGaH~~~r~d~~g~~h~~w~ 470 (470)
T PTZ00142 395 DFNDELKNKQPSWRKVVSMATKNGIPTPAFSASLAYYQMYRSQNLPANLVQAQRDYFGAHTYKRLDRPGAFHTNWE 470 (470)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHHHHHhCCCCcccCCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999994
No 4
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=100.00 E-value=2.5e-113 Score=902.19 Aligned_cols=481 Identities=86% Similarity=1.312 Sum_probs=446.1
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 1 M~~~~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
|++..+++|||||+|.||.+||+||+++||+|++|||++++++++.+.+...|...+..+.|++|+++.|+.||+||+||
T Consensus 1 ~~~~~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v 80 (493)
T PLN02350 1 MASAALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILV 80 (493)
T ss_pred CCCCCCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEEC
Confidence 67777789999999999999999999999999999999999999887421111002346889999999888899999999
Q ss_pred CCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCCcccCCCCHHHHHHHHH
Q 010702 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRD 160 (503)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~~i~~gg~~~a~~~v~~ 160 (503)
|++.++++|++++++.+.+|++|||+||+.|.+++++.+.++++|++|+++|||||+++|+.|+++|+||+++++++++|
T Consensus 81 ~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~~im~GG~~~a~~~v~p 160 (493)
T PLN02350 81 KAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGPSLMPGGSFEAYKNIED 160 (493)
T ss_pred CCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCCeEEecCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHhccCCcchhHHhh
Q 010702 161 ILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHV-GGLSNAELAEIFDEWNKGELESFLVEI 239 (503)
Q Consensus 161 ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~-g~~~~~~i~~~~~~~~~g~~~s~l~~~ 239 (503)
+|+.++++.++++|++|+|+.|+||++||+||++++++|++++|++.++++. | ++++++.++|..|+.+.+.||++++
T Consensus 161 vL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~G-ld~~~l~~vf~~~~~g~~~S~llei 239 (493)
T PLN02350 161 ILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGG-LSNEELAEVFAEWNKGELESFLIEI 239 (493)
T ss_pred HHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHcCCCccchHHHH
Confidence 9999998877778999999999999999999999999999999999999995 7 9999999999999999999999999
Q ss_pred hhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCccccc
Q 010702 240 TADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQ 319 (503)
Q Consensus 240 ~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~ 319 (503)
+.+++..+++|+++|.++.+.||++|||||+|++++|.++|+|+|+|.++|++|+.|+.|++|..+++.+++|..+.. .
T Consensus 240 ~~~~l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~~p~i~~av~~r~~s~~k~~r~~~~~~~~~~~~~~~-~ 318 (493)
T PLN02350 240 TADIFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGLKEERVAAAKVFKEAGLEDI-L 318 (493)
T ss_pred HHHHHhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCCccHHHHHHHHHHHhccHHHHHHHHhhcCCCCcccc-c
Confidence 999987766688889999999999999999999999999999999999999999999999999999999986621100 0
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCC
Q 010702 320 NVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLAS 399 (503)
Q Consensus 320 ~~~~~~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ 399 (503)
......+...|+++|++|+|+++|++|+|||+||++++++|+|++|+.+|+++||+||||||+||+.|.++|+++|++.|
T Consensus 319 ~~~~~~~~~~~~~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~a~~~~~~l~~ 398 (493)
T PLN02350 319 SADSGVDKKQLIDDVRQALYASKICSYAQGMNLIRAKSVEKGWNLNLGELARIWKGGCIIRAVFLDRIKKAYDRNPDLAS 398 (493)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHHcCCChhh
Confidence 00012356789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCCcchhHHHhhhhhcCCccccccCCCCcccccc
Q 010702 400 LVVDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479 (503)
Q Consensus 400 ll~~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~~~~~~~~~iqa~rd~fG~H~~~r~d~~~~~h~~w 479 (503)
||+++.|.+.+.+..++|||+|..|++.|+|+|+||+||+||++++++++|+|+|||||||||+|+|+|+|++|.||++|
T Consensus 399 l~~~~~~~~~~~~~~~~~r~~V~~a~~~gip~P~ls~aL~y~~s~~~~~~~~nliqaqRd~FGaH~~~r~d~~g~~h~~w 478 (493)
T PLN02350 399 LLVDPEFAKEMVERQAAWRRVVSLAINAGISTPGMSASLAYFDTYRRARLPANLVQAQRDYFGAHTYERVDRPGSFHTEW 478 (493)
T ss_pred hcCCHHHHHHHHHhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCCccHHHHHHHHHHhCCCceeeCCCCCCCcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 010702 480 TKLP 483 (503)
Q Consensus 480 ~~~~ 483 (503)
++.+
T Consensus 479 ~~~~ 482 (493)
T PLN02350 479 TKLA 482 (493)
T ss_pred hhhc
Confidence 8643
No 5
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=100.00 E-value=2.6e-112 Score=890.88 Aligned_cols=454 Identities=58% Similarity=0.970 Sum_probs=431.1
Q ss_pred HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh-hcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhHHHHHHHHHh
Q 010702 17 MGQNLALNVAEKGFPISVYNRTTSKVDETLDR-AHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSE 95 (503)
Q Consensus 17 mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~ 95 (503)
||.+||+||+++||+|++|||++++++++.+. +... +++.+.|++++++.++.||+||+|||++.++++|++++++
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~---g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~ 77 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGK---KIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLP 77 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCC---CeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHh
Confidence 89999999999999999999999999999874 3211 3678999999999888899999999999999999999999
Q ss_pred cCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHHhccc-CCCCc
Q 010702 96 HMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQV-DDGPC 174 (503)
Q Consensus 96 ~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~~i~~gg~~~a~~~v~~ll~~ig~~~-~~~~~ 174 (503)
.+.+|++|||+||+.|.+++++.+.++++|++|+++|||||+++|+.|+++|+||+++++++++|+|+.+++++ ++++|
T Consensus 78 ~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~siM~GG~~~a~~~~~piL~~ia~~~~~g~~c 157 (459)
T PRK09287 78 LLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGPSIMPGGQKEAYELVAPILEKIAAKVEDGEPC 157 (459)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCEEEEeCCHHHHHHHHHHHHHHhhhhcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987 78899
Q ss_pred EEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCc
Q 010702 175 VTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKH-VGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEG 253 (503)
Q Consensus 175 v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~-~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~ 253 (503)
+.|+|+.|+||++|||||+|+|++|++++|++.|+++ .| ++++++.++|+.||.+.+.||+++++.+++..+|..++.
T Consensus 158 ~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~G-l~~~~l~~v~~~wn~g~~~S~l~ei~~~~l~~~d~~~~~ 236 (459)
T PRK09287 158 VTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLG-LSAEEIADVFAEWNKGELNSYLIEITADILRQKDEETGK 236 (459)
T ss_pred eeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHhcCCCccChHHHhHhHHHhcCCCCCCC
Confidence 9999999999999999999999999999999999995 77 999999999999999999999999999999875522555
Q ss_pred hhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCcccccccccccchhhHHHH
Q 010702 254 ELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDD 333 (503)
Q Consensus 254 ~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~ 333 (503)
+.+|.|+|.++|||||+|++++|.++|||+|+|..||++|+.|..+++|..+++.|.+|.. ....+.+||+||
T Consensus 237 ~~~d~i~d~~~~~gtg~Wt~~~a~~~~v~~~~i~~AvfaR~~S~~k~~r~~~~~~~~g~~~-------~~~~~~~~~i~~ 309 (459)
T PRK09287 237 PLVDVILDKAGQKGTGKWTSQSALDLGVPLTLITEAVFARYLSSLKDQRVAASKVLSGPAA-------KFEGDKAEFIED 309 (459)
T ss_pred cchHHhcCcccCCcHHHHHHHHHHHhCCChHHHHHHHHHHhccccHHHHHHhhcccCCCCC-------cccccHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999987642 112356899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcchhhHhHHHHhh
Q 010702 334 VRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQR 413 (503)
Q Consensus 334 v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~~~~~~~~~~~~ 413 (503)
||||||||+|++|+|||+||++++++|+|++|+.+|+++||+||||||+||+.|.++|+++|++.|||+++.|...+++.
T Consensus 310 v~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~~~~~~i~~~ 389 (459)
T PRK09287 310 VRQALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWRGGCIIRAQFLQKITDAYEANPDLANLLLDPYFKDILEEY 389 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCEEeHHHHHHHHHHHHhCCCchhhcCCHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCCcchhHHHhhhhhcCCccccccCCCCcccccccC
Q 010702 414 QAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTK 481 (503)
Q Consensus 414 ~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~~~~~~~~~iqa~rd~fG~H~~~r~d~~~~~h~~w~~ 481 (503)
.++|||+|..|++.|+|+|+||+||+||++++++++|+|||||||||||+|||+|+|++|.||++|++
T Consensus 390 ~~~~R~vV~~a~~~gip~P~ls~aL~y~d~~~~~~~~anliqaqRd~FGaH~~~r~d~~g~~h~~w~~ 457 (459)
T PRK09287 390 QDALRRVVALAVQAGIPVPAFSSALSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTEWSE 457 (459)
T ss_pred hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHHHhHhCCCCcccCCCCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999975
No 6
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=100.00 E-value=2e-111 Score=887.99 Aligned_cols=463 Identities=59% Similarity=0.977 Sum_probs=435.9
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhHH
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVD 87 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v~ 87 (503)
+|||||+|.||.+||++|+++||+|++|||++++++++.+.+... .++..+.+++++++.++.||+||+|||++.+++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g--~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~ 78 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKG--KKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVD 78 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCC--CCceecCCHHHHHhhcCCCCEEEEECCCcHHHH
Confidence 599999999999999999999999999999999999988752110 025677899999988888999999999999999
Q ss_pred HHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHHhc
Q 010702 88 QTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAA 167 (503)
Q Consensus 88 ~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~~i~~gg~~~a~~~v~~ll~~ig~ 167 (503)
++++++.+.+.+|++|||+||+.+.++.++.+.+.++|++|+++|||||+++|+.|+++|+||+++++++++|+|+.+++
T Consensus 79 ~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~~im~GG~~~a~~~~~p~L~~ia~ 158 (467)
T TIGR00873 79 AVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGPSIMPGGSAEAWPLVAPIFQKIAA 158 (467)
T ss_pred HHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCCcCCCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccc
Q 010702 168 QVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLK-HVGGLSNAELAEIFDEWNKGELESFLVEITADIFKV 246 (503)
Q Consensus 168 ~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~-~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~ 246 (503)
++++++|++|+|+.|+||++|||||+++|++|++++|++.|++ +.| ++++++.++|+.|+.+.++||+++++.+++.+
T Consensus 159 ~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g-~~~~~l~~v~~~w~~~~~~S~l~~~~~~~~~~ 237 (467)
T TIGR00873 159 KVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLG-LSNEEIAEVFTEWNNGELDSYLIEITADILKK 237 (467)
T ss_pred hcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHhcCCcccchHHHhHHHHHhc
Confidence 8777789999999999999999999999999999999999996 577 99999999999999999999999999999988
Q ss_pred cccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCcccccccccccc
Q 010702 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVD 326 (503)
Q Consensus 247 ~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 326 (503)
+|+ .+.+++|.|.|.++|||||+|++++|.++|||+|+|.+|+++|+.|..|++|..+++.|.+|... ....+
T Consensus 238 ~d~-~~~~~l~~i~~~~~~~gtg~wt~~~a~~~~v~~p~i~~av~~R~~S~~k~~r~~~~~~~~gp~~~------~~~~~ 310 (467)
T TIGR00873 238 KDE-DGKPLVDKILDTAGQKGTGKWTAISALDLGVPVTLITESVFARYLSSLKEERVAASKVLSGPLAP------EPAVD 310 (467)
T ss_pred cCC-CCCccHHhhcCcccCccHHHHHHHHHHHcCCCchHHHHHHHHHhccccHHHHHHhhcccCCCCcc------ccccc
Confidence 664 34589999999999999999999999999999999999999999999999999999999776321 12235
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcchhhH
Q 010702 327 KKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEF 406 (503)
Q Consensus 327 ~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~~~~~ 406 (503)
.+||+||||||||||+|++|+|||+||+++|++|+|++|+.+|++|||+||||||+||+.|.++|+++|++.|||+|+.|
T Consensus 311 ~~~~i~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~a~~~~~~l~~l~~~~~~ 390 (467)
T TIGR00873 311 KEEFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGEIALIWRGGCIIRSGFLDKITKAFAENPDLANLLLAPYF 390 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHHcCCChhhhcCCHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCCcchhHHHhhhhhcCCccccccCCCC--ccccccc
Q 010702 407 AREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPG--SFHTEWT 480 (503)
Q Consensus 407 ~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~~~~~~~~~iqa~rd~fG~H~~~r~d~~~--~~h~~w~ 480 (503)
...+++..++|||+|..|++.|+|+|+||+||+||++|+++++|+|||||||||||+|||+|+|++| .||++|+
T Consensus 391 ~~~i~~~~~~~r~vV~~a~~~gip~P~ls~aL~y~~~~~s~~~~~nliqaqRd~FGaH~~~r~d~~g~~~~h~~w~ 466 (467)
T TIGR00873 391 KDALKDAQSGWRRVVALAIEYGIPVPAFSAALSFYDGYRTARLPANLLQAQRDYFGAHTYERTDKPRGEFFHTNWT 466 (467)
T ss_pred HHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCcccHHHHHHHHHHhccccccccCCCCCCccCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 9999996
No 7
>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....
Probab=100.00 E-value=2.8e-86 Score=644.39 Aligned_cols=291 Identities=62% Similarity=1.029 Sum_probs=248.7
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhc
Q 010702 184 GNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKT 263 (503)
Q Consensus 184 g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~ 263 (503)
|||||||||+|||++||+++|+|.++++..|++++++.++|+.||+|.++|||++++.++++++| .++++++|.|+|.+
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~~ei~~vf~~Wn~g~l~S~Lieit~~il~~~d-~~g~~lld~I~d~a 79 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSNEEIADVFEEWNKGELRSYLIEITADILRKKD-ETGGPLLDKILDKA 79 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHTTTT-BHHHHHHHHHHT-B--TTSSBGGGGB-S--
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHCcCchhhHHHHHHHHHHhhcc-CccCcchhhhCCcc
Confidence 89999999999999999999999999976559999999999999999999999999999999866 56779999999999
Q ss_pred CCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCcccccccccccchhhHHHHHHHHHHHHHH
Q 010702 264 GMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKI 343 (503)
Q Consensus 264 ~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~v~~ai~~~~~ 343 (503)
+|||||+|++++|.++|||+|+|.+||++|++|+.+++|..+++.+++|.... ....+...|+++|++|+++|+|
T Consensus 80 ~~kGtG~Wt~~~a~~~gvp~p~I~~a~~aR~~S~~k~~R~~~s~~~~~~~~~~-----~~~~~~~~~i~~l~~Aly~~~i 154 (291)
T PF00393_consen 80 GQKGTGKWTVQEALELGVPAPTIAAAVFARFLSAQKEERVAASKILPGPQKFD-----ESKEDKEEFIEDLRKALYAAKI 154 (291)
T ss_dssp --BSHHHHHHHHHHHHT---HHHHHHHHHHHHHHTHHHHHHHHHHSTT-S-ST-----TS-SSHHHHHHHHHHHHHHHHH
T ss_pred CCCCccchHHHHHHHhCCCccHHHHHHHHHHHhcCCcHHHHHHhhcccccccc-----cccccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998864110 2345778899999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcchhhHhHHHHhhhhHHHHHHHH
Q 010702 344 CSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGL 423 (503)
Q Consensus 344 ~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~r~~v~~ 423 (503)
++|+|||+||+++|++|+|++|+.+|++|||+||||||.||+.|.++|+++|++.|||+++.|.+.+++..++|||+|..
T Consensus 155 ~~yaQGf~ll~~as~~~~W~lnl~~ia~IWr~GCIIRs~lL~~i~~af~~~p~l~nLll~~~f~~~l~~~~~~lR~vV~~ 234 (291)
T PF00393_consen 155 ISYAQGFALLRAASKEYGWDLNLSEIARIWRGGCIIRSWLLDDIAEAFKENPDLENLLLDPYFAEELKDNQPSLRRVVSL 234 (291)
T ss_dssp HHHHHHHHHHHHHHHHHT----HHHHHHHTSSSSTT-BTHHHHHHHHHHH-TT-STGGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcCcHHHHHHHHhccchHHHHHHHHHHHHHHhCCChhccccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCChHHHHHHHHHHHhhccCCcchhHHHhhhhhcCCccccccCCCCccccccc
Q 010702 424 AISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480 (503)
Q Consensus 424 a~~~gvp~P~~saal~y~~~~~~~~~~~~~iqa~rd~fG~H~~~r~d~~~~~h~~w~ 480 (503)
|++.|+|+|++++||+||++++++++|+|||||||||||+|||+|+|++|.||++|+
T Consensus 235 ai~~gipvPalsaaL~Y~ds~~~~~lpanlIQAqRDyFGaHtyeR~D~~g~fH~~W~ 291 (291)
T PF00393_consen 235 AIEAGIPVPALSAALSYFDSYRSERLPANLIQAQRDYFGAHTYERIDKEGSFHTEWS 291 (291)
T ss_dssp HHHHT---HHHHHHHHHHHHHTTSSHTHHHHHHHHHHHH---EEBSSSSSEE---TT
T ss_pred HHHcCCChHHHHHHHHHHHhcccCCCcHHHHHHHHHHhcCcceeecCCCCCcCCCCC
Confidence 999999999999999999999999999999999999999999999999999999995
No 8
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-60 Score=441.78 Aligned_cols=298 Identities=28% Similarity=0.509 Sum_probs=269.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
|+||+||||.||.+|+++|.+.||+|.+||+|++.++++.+.+ ++.++|++++++.|..+++|+++||.+..+
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~g-------a~~a~sl~el~~~L~~pr~vWlMvPag~it 73 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEG-------ATGAASLDELVAKLSAPRIVWLMVPAGDIT 73 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcC-------CccccCHHHHHHhcCCCcEEEEEccCCCch
Confidence 5899999999999999999999999999999999999998875 467889999999999999999999999899
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHHh
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVA 166 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~~i~~gg~~~a~~~v~~ll~~ig 166 (503)
+.+++.+.+.|++|++|||.+|+.+.++.++.+.++++|+||+|++.|||..+++.|.++|+||+++++++++|+|+.++
T Consensus 74 ~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~~lMiGG~~~a~~~~~pif~~lA 153 (300)
T COG1023 74 DAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGYCLMIGGDEEAVERLEPIFKALA 153 (300)
T ss_pred HHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCceEEecCcHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccc
Q 010702 167 AQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKV 246 (503)
Q Consensus 167 ~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~ 246 (503)
+. .
T Consensus 154 ------~g-----------------------------------------------------------------------e 156 (300)
T COG1023 154 ------PG-----------------------------------------------------------------------E 156 (300)
T ss_pred ------cC-----------------------------------------------------------------------c
Confidence 22 0
Q ss_pred cccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCcccccccccccc
Q 010702 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVD 326 (503)
Q Consensus 247 ~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 326 (503)
+.| .+-+| .+
T Consensus 157 -~Gy---------------------------------------------------------l~~Gp------------~G 166 (300)
T COG1023 157 -DGY---------------------------------------------------------LYCGP------------SG 166 (300)
T ss_pred -Ccc---------------------------------------------------------ccccC------------CC
Confidence 000 01122 27
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcchhhH
Q 010702 327 KKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEF 406 (503)
Q Consensus 327 ~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~~~~~ 406 (503)
+|||+|||||||||++|++|+|||+||+++ .+++|+++|+++||.|+.||||||+.+.++|+++++++.+- ..+
T Consensus 167 sGHfvKMVHNGIEYGmM~a~aEGfelL~~s----~fD~D~~~VA~vW~hGSVIrSWLldLt~~Af~~d~~L~q~~--g~v 240 (300)
T COG1023 167 SGHFVKMVHNGIEYGMMQAIAEGFELLKNS----PFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKDPDLDQIS--GRV 240 (300)
T ss_pred cchhHHHHhccHHHHHHHHHHHHHHHHHhC----CCCCCHHHHHHHHhCcchHHHHHHHHHHHHHhhCCCHHHhc--Cee
Confidence 899999999999999999999999999965 48899999999999999999999999999999988764422 223
Q ss_pred hHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH-HHHhhccCCcchhHHHhhhhhcCCcccccc
Q 010702 407 AREMVQRQAAWRRVVGLAISAGISTPGMCASLS-YFDTYRRARLPANLVQAQRDLFGAHTYERI 469 (503)
Q Consensus 407 ~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~-y~~~~~~~~~~~~~iqa~rd~fG~H~~~r~ 469 (503)
.+ ++++ ||+|++|++.|+|+|+|+.||+ .|.|........+++.|+|+.||+|..++.
T Consensus 241 ~d---SGEG--rWTv~~aldlgvpaPVia~al~~Rf~S~~~d~f~~kvlaalR~~FGgH~vk~k 299 (300)
T COG1023 241 SD---SGEG--RWTVEEALDLGVPAPVIALALMMRFRSRQDDTFAGKVLAALRNEFGGHAVKKK 299 (300)
T ss_pred cc---CCCc--eeehHHHHhcCCCchHHHHHHHHHHhccchhhHHHHHHHHHHHHhCCcccccC
Confidence 33 7888 9999999999999999999999 688888888889999999999999998775
No 9
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=100.00 E-value=2.5e-54 Score=434.42 Aligned_cols=295 Identities=28% Similarity=0.488 Sum_probs=257.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
|+|||||+|.||.+||++|+++||+|.+|||++++++++.+.+ .....+++++++.+..+|+||+|||++ .+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g-------~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~ 72 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDR-------TTGVANLRELSQRLSAPRVVWVMVPHG-IV 72 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcC-------CcccCCHHHHHhhcCCCCEEEEEcCch-HH
Confidence 4899999999999999999999999999999999999888754 344578888887767799999999998 99
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHHh
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVA 166 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~~i~~gg~~~a~~~v~~ll~~ig 166 (503)
+++++++.+.+.+|++|||+||+.|.++.++.+.++++|++|+++|++||+.+++.|.++|+||+++++++++|+|+.++
T Consensus 73 ~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG~~~~~~~~~~~l~~~~ 152 (298)
T TIGR00872 73 DAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGGDGEAFARAEPLFADVA 152 (298)
T ss_pred HHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccc
Q 010702 167 AQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKV 246 (503)
Q Consensus 167 ~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~ 246 (503)
.+. +.++|+|+.
T Consensus 153 ~~~---~~~~~~G~~----------------------------------------------------------------- 164 (298)
T TIGR00872 153 PEE---QGYLYCGPC----------------------------------------------------------------- 164 (298)
T ss_pred CcC---CCEEEECCc-----------------------------------------------------------------
Confidence 100 011111111
Q ss_pred cccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCcccccccccccc
Q 010702 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVD 326 (503)
Q Consensus 247 ~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 326 (503)
+
T Consensus 165 -------------------------------------------------------------------------------G 165 (298)
T TIGR00872 165 -------------------------------------------------------------------------------G 165 (298)
T ss_pred -------------------------------------------------------------------------------c
Confidence 3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcchhhH
Q 010702 327 KKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEF 406 (503)
Q Consensus 327 ~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~~~~~ 406 (503)
++|++|++||++++++|++|+|||.|++++ +|++|+++++++|++||+++|++|+.+.++|++++.+++ |
T Consensus 166 ~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~----g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~~~~~~~~~~------~ 235 (298)
T TIGR00872 166 SGHFVKMVHNGIEYGMMAAIAEGFEILRNS----QFDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDLAE------F 235 (298)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCCcCHHHHHHHHcCCchhHhHHHHHHHHHHhcCCcHHH------H
Confidence 456778888888888888888888888864 799999999999999999999999999999998775432 4
Q ss_pred hHH-HHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccC-CcchhHHHhhhhhcCCccccc
Q 010702 407 ARE-MVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRA-RLPANLVQAQRDLFGAHTYER 468 (503)
Q Consensus 407 ~~~-~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~~~-~~~~~~iqa~rd~fG~H~~~r 468 (503)
... .+++++ ||+|.+|++.|+|+|++++||+|++.++++ ++|+|+|||||||||+|+|++
T Consensus 236 ~~~~~~~~~~--r~~v~~a~~~g~p~P~~~~al~~~~~~~~~~~~~~~~~~~~r~~fg~h~~~~ 297 (298)
T TIGR00872 236 SGRVSDSGEG--RWTVIAAIDLGVPAPVIATSLQSRFASRDLDDFANKVLAALRKEFGGHAEKK 297 (298)
T ss_pred HHHHHhhccH--HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhhCCCCcCC
Confidence 444 355555 999999999999999999999999988888 999999999999999999987
No 10
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=4e-47 Score=382.90 Aligned_cols=299 Identities=33% Similarity=0.571 Sum_probs=243.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
|+|||||+|.||.+||++|+++|++|.+|||++++++++.+.+ +..+.+++++++.++.+|+||+++|++..+
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g-------~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~ 73 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEG-------ATGADSLEELVAKLPAPRVVWLMVPAGEIT 73 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCC-------CeecCCHHHHHhhcCCCCEEEEEecCCcHH
Confidence 4899999999999999999999999999999999998887643 467889999988654579999999998789
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHHh
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVA 166 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~~i~~gg~~~a~~~v~~ll~~ig 166 (503)
+++++++.+.+.+|++|||+||+.|..++++.+.++++|++|+|+||+||+.+++.|.++|+||+++++++++|+|+.++
T Consensus 74 ~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~~~~a~~g~~~~~gG~~~~~~~~~~~l~~~~ 153 (301)
T PRK09599 74 DATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGGVWGLERGYCLMIGGDKEAVERLEPIFKALA 153 (301)
T ss_pred HHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcCHHHHhcCCeEEecCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccc
Q 010702 167 AQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKV 246 (503)
Q Consensus 167 ~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~ 246 (503)
.+.+ .+++|+|+.|+|+++|+++|.+.++.++.+
T Consensus 154 ~~~~--~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~-------------------------------------------- 187 (301)
T PRK09599 154 PRAE--DGYLHAGPVGAGHFVKMVHNGIEYGMMQAY-------------------------------------------- 187 (301)
T ss_pred cccc--CCeEeECCCcHHHHHHHHHHHHHHHHHHHH--------------------------------------------
Confidence 2100 168888887766665555555554444444
Q ss_pred cccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCcccccccccccc
Q 010702 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVD 326 (503)
Q Consensus 247 ~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 326 (503)
T Consensus 188 -------------------------------------------------------------------------------- 187 (301)
T PRK09599 188 -------------------------------------------------------------------------------- 187 (301)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcchhhH
Q 010702 327 KKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEF 406 (503)
Q Consensus 327 ~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~~~~~ 406 (503)
+|+|.|+++ ++|++|+++++++|+.||+++|++++....++.+++.. +.+
T Consensus 188 --------------------aEa~~l~~~----~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~------~~~ 237 (301)
T PRK09599 188 --------------------AEGFELLEA----SRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAEDPKL------DEI 237 (301)
T ss_pred --------------------HHHHHHHHH----cCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHhcCCCH------HHH
Confidence 444444443 34556666667777777777777777777776554321 112
Q ss_pred hHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHH-HHhhccCCcchhHHHhhhhhcCCcccccc
Q 010702 407 AREMVQRQAAWRRVVGLAISAGISTPGMCASLSY-FDTYRRARLPANLVQAQRDLFGAHTYERI 469 (503)
Q Consensus 407 ~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y-~~~~~~~~~~~~~iqa~rd~fG~H~~~r~ 469 (503)
...++. ..++||++..|.+.|+|+|+++++++| +.++....+|.+.+|+||||||+|+|+|.
T Consensus 238 ~~~~kd-~~~~~~~~~~A~~~~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~fg~h~~~~~ 300 (301)
T PRK09599 238 SGYVED-SGEGRWTVEEAIDLAVPAPVIAAALFMRFRSRQEDSFADKVVAALRNGFGGHAVKKK 300 (301)
T ss_pred HHHHHh-hCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhcCCCCccCC
Confidence 112222 333499999999999999999999997 99999999999999999999999999995
No 11
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=9.3e-47 Score=369.44 Aligned_cols=256 Identities=26% Similarity=0.412 Sum_probs=239.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH-HHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK-VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+||||||+|.||.+||.||.++||+|++|||++++ .+.+.+.| ...+.++.|+++. +|+||+|||++.+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~G-------a~~a~s~~eaa~~---aDvVitmv~~~~~ 70 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAG-------ATVAASPAEAAAE---ADVVITMLPDDAA 70 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcC-------CcccCCHHHHHHh---CCEEEEecCCHHH
Confidence 48999999999999999999999999999999999 44444444 4678899999998 9999999999999
Q ss_pred HHHHH---HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-cccCCCCHHHHHHHHHH
Q 010702 86 VDQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDI 161 (503)
Q Consensus 86 v~~vl---~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i~~gg~~~a~~~v~~l 161 (503)
+++|+ +++.+.+++|.++||+||..|..++++.+.++++|++|+|+|||||+.++..|+ +||+||+++++++++|+
T Consensus 71 V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pv 150 (286)
T COG2084 71 VRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPV 150 (286)
T ss_pred HHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHH
Confidence 99999 578899999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhh
Q 010702 162 LQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITA 241 (503)
Q Consensus 162 l~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~ 241 (503)
|+.+| ++++|+|+.|+|+.+|++||.+..+.+++++|++.++++.| +|++.+.+++ +.+..+||.++.+.
T Consensus 151 l~~~g------~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~G-ld~~~~~~vi---~~~~~~s~~~e~~~ 220 (286)
T COG2084 151 LEAMG------KNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAG-LDPDVVLEVI---SGGAAGSWILENYG 220 (286)
T ss_pred HHHhc------CceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hccccCChHHHhhc
Confidence 99999 89999999999999999999999999999999999999999 9999999998 56788999999998
Q ss_pred hhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHH
Q 010702 242 DIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (503)
Q Consensus 242 ~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~A 289 (503)
+.+.. ++|.|+|.++++.||++ ++.++|.++|+|+|+.+.+
T Consensus 221 ~~m~~-~~~~p~F~v~~~~KDl~------la~~~A~~~g~~lP~~~~~ 261 (286)
T COG2084 221 PRMLE-GDFSPGFAVDLMLKDLG------LALDAAKELGAPLPLTALA 261 (286)
T ss_pred chhhc-CCCCcchhHHHHHHHHH------HHHHHHHhcCCCCcHHHHH
Confidence 77765 45999999999999997 9999999999999998865
No 12
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=100.00 E-value=3.7e-43 Score=336.96 Aligned_cols=263 Identities=23% Similarity=0.350 Sum_probs=244.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+++||+||+|.||.+|+.||.++||.|+||||+.+++++|.+.|. +.+++|.|+++. +|+||.|||++.+
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga-------~v~~sPaeVae~---sDvvitmv~~~~~ 104 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGA-------RVANSPAEVAED---SDVVITMVPNPKD 104 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhch-------hhhCCHHHHHhh---cCEEEEEcCChHh
Confidence 468999999999999999999999999999999999999998864 578999999998 9999999999999
Q ss_pred HHHHH---HHHHhcCCCCCEE-EecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-cccCCCCHHHHHHHHH
Q 010702 86 VDQTI---AALSEHMSPGDCI-IDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRD 160 (503)
Q Consensus 86 v~~vl---~~l~~~l~~g~iI-Id~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i~~gg~~~a~~~v~~ 160 (503)
+++++ .+++..+++|... ||.||+.|..++++.+.+..++.+|+|+|||||..+|+.|+ +||+|||++.++++.+
T Consensus 105 v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~ 184 (327)
T KOG0409|consen 105 VKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASP 184 (327)
T ss_pred hHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHH
Confidence 99999 4667777788877 99999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhh
Q 010702 161 ILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240 (503)
Q Consensus 161 ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~ 240 (503)
+|+.+| ++++|+|..|.|..+|+++|.+....|..++|++.|+.+.| +|+..+.+++ |.|...|+.+...
T Consensus 185 ~~~~mG------k~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~G-Ld~~~l~eil---n~G~~~S~~~~~~ 254 (327)
T KOG0409|consen 185 VFKLMG------KNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLG-LDAKKLLEIL---NTGRCWSSMFYNP 254 (327)
T ss_pred HHHHhc------ceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCCcccHHHhCc
Confidence 999999 99999999999999999999999999999999999999999 9999999998 5688889999988
Q ss_pred hhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHh
Q 010702 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296 (503)
Q Consensus 241 ~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s 296 (503)
.+.+.+ ++|.|+|.++++.||++ ++..+|.+.++|+|+.+.| .+-|.+
T Consensus 255 ~p~m~k-~dy~p~f~~~~m~KDLg------la~~~a~~~~~~~P~~slA-~qly~~ 302 (327)
T KOG0409|consen 255 VPGMLK-GDYNPGFALKLMVKDLG------LALNAAESVKVPMPLGSLA-HQLYKS 302 (327)
T ss_pred Cchhhc-CCCCCcchHHHHHHHHH------HHHHhhhccCCCCchHHHH-HHHHHH
Confidence 887665 45999999999999997 9999999999999999877 344443
No 13
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=1.2e-40 Score=335.32 Aligned_cols=274 Identities=35% Similarity=0.603 Sum_probs=242.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
|+|||||+|.||.+||.+|+++|++|.+|||++++.+.+.+.+ ...+.+++++++..+.+|+||+|+|++.++
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g-------~~~~~s~~~~~~~~~~advVi~~vp~~~~~ 73 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLG-------ITARHSLEELVSKLEAPRTIWVMVPAGEVT 73 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCC-------CeecCCHHHHHHhCCCCCEEEEEecCchHH
Confidence 4799999999999999999999999999999999988886543 466789999987644469999999998899
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHHh
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVA 166 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~~i~~gg~~~a~~~v~~ll~~ig 166 (503)
+++++++.+.+.+|++|||+||+.|..++++.+.+.++|++|+|+||+|++.+++.|.++|+||+++++++++|+|+.++
T Consensus 74 ~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~~~~~gG~~~~~~~~~~~l~~~~ 153 (299)
T PRK12490 74 ESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGYCLMVGGDKEIYDRLEPVFKALA 153 (299)
T ss_pred HHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCCeEEecCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhcc-CCcchhHHhhhhhhc
Q 010702 167 AQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVG-GLSNAELAEIFDEWNK-GELESFLVEITADIF 244 (503)
Q Consensus 167 ~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g-~~~~~~i~~~~~~~~~-g~~~s~l~~~~~~~l 244 (503)
.+. ++++|+|+.|+|+++|+++|.+.++.+++++|++.++++.| ++|++++.++ |+. +.++|++++...+++
T Consensus 154 ~~~---~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~---~~~~~~~~s~~l~~~~~~~ 227 (299)
T PRK12490 154 PEG---PGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARL---WRNGSVIRSWLLDLTVKAL 227 (299)
T ss_pred CcC---CcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHH---HcCCcHHHHHHHHHHHHHH
Confidence 310 27999999999999999999999999999999999999975 4788888777 565 458999999998888
Q ss_pred cccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhcch
Q 010702 245 KVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK 299 (503)
Q Consensus 245 ~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~~~ 299 (503)
.. +++ .+.++.+.||+ ++++|++++|.+.|+|+|++..+++.|+.+..+
T Consensus 228 ~~-~~~--~~~l~~~~KD~---~~~~l~~~~A~~~g~~~P~~~~a~~~~~~~~~~ 276 (299)
T PRK12490 228 AE-DPK--LAGIKGYVNDS---GEGRWTVEEAIELAVAAPVIAASLFMRFASQED 276 (299)
T ss_pred hh-CCC--hhhhhHHHHhc---CcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcc
Confidence 64 322 25678888875 456799999999999999999987788888765
No 14
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=1.2e-40 Score=333.63 Aligned_cols=261 Identities=22% Similarity=0.337 Sum_probs=235.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
|+|||||+|.||.+||++|.++||+|.+|||++. .+++.+.+ ...+.++.++++. +|+||+|||++.++
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g-------~~~~~s~~~~~~~---advVi~~v~~~~~v 69 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLG-------AVSVETARQVTEA---SDIIFIMVPDTPQV 69 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcC-------CeecCCHHHHHhc---CCEEEEeCCChHHH
Confidence 4799999999999999999999999999999975 56665433 4567889998887 99999999998889
Q ss_pred HHHHH---HHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-cccCCCCHHHHHHHHHHH
Q 010702 87 DQTIA---ALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDIL 162 (503)
Q Consensus 87 ~~vl~---~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i~~gg~~~a~~~v~~ll 162 (503)
++++. ++.+.+.+|++|||+||..|..++++.+.+.++|+.|+++||+|++.+++.|+ .+|+||+++++++++|+|
T Consensus 70 ~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l 149 (292)
T PRK15059 70 EEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLF 149 (292)
T ss_pred HHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHH
Confidence 99883 46777889999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhh
Q 010702 163 QKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITAD 242 (503)
Q Consensus 163 ~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~ 242 (503)
+.++ ++++|+|+.|+|+.+|+++|.+..+.+++++|++.++++.| +|++++.+++ +.+.+.|++++.+.+
T Consensus 150 ~~~g------~~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~G-ld~~~~~~~l---~~~~~~s~~~~~~~~ 219 (292)
T PRK15059 150 ELLG------KNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAG-ADPVRVRQAL---MGGFASSRILEVHGE 219 (292)
T ss_pred HHHc------CCcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HcCcccCHHHHhhch
Confidence 9999 88999999999999999999999999999999999999999 9999999998 567788999998887
Q ss_pred hccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHh
Q 010702 243 IFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296 (503)
Q Consensus 243 ~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s 296 (503)
.+.. ++|+++|.++.+.||+. ++++.|++.|+|+|+...+ .+.|..
T Consensus 220 ~~~~-~~~~~~f~l~~~~KDl~------l~~~~a~~~g~~~p~~~~~-~~~~~~ 265 (292)
T PRK15059 220 RMIK-RTFNPGFKIALHQKDLN------LALQSAKALALNLPNTATC-QELFNT 265 (292)
T ss_pred hhhc-CCCCCCCchHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHH
Confidence 6654 56889999999999996 9999999999999988754 444443
No 15
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-39 Score=326.57 Aligned_cols=263 Identities=22% Similarity=0.275 Sum_probs=233.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||.+||.+|+++||+|++|||++++.+++.+.+ +..+.++.+++++ +|+||+|+|+...+
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g-------~~~~~s~~~~~~~---aDvVi~~vp~~~~~ 71 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKG-------ATPAASPAQAAAG---AEFVITMLPNGDLV 71 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcC-------CcccCCHHHHHhc---CCEEEEecCCHHHH
Confidence 5899999999999999999999999999999999999887654 3457788888887 99999999998778
Q ss_pred HHHH---HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-cccCCCCHHHHHHHHHHH
Q 010702 87 DQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDIL 162 (503)
Q Consensus 87 ~~vl---~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i~~gg~~~a~~~v~~ll 162 (503)
+.++ +++.+.+++|.+|||+||..|..++++.+.+.++|+.|+|+||+|++..+..|. ++|+||+++++++++|+|
T Consensus 72 ~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~l 151 (296)
T PRK15461 72 RSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPIL 151 (296)
T ss_pred HHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHHH
Confidence 8887 357777889999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred HHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhh
Q 010702 163 QKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITAD 242 (503)
Q Consensus 163 ~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~ 242 (503)
+.+| +.++|+|+.|+|+.+|+++|.+....+++++|++.++++.| +|++.+.+++. .+...++.+....+
T Consensus 152 ~~~g------~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G-ld~~~~~~~l~---~~~~~~~~~~~~~~ 221 (296)
T PRK15461 152 MAMG------NELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALG-LSFDVALKVMS---GTAAGKGHFTTTWP 221 (296)
T ss_pred HHHc------CCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHh---cCcccChHHHcccc
Confidence 9999 78999999999999999999999999999999999999999 99999999984 44445555554433
Q ss_pred -hccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 010702 243 -IFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSG 297 (503)
Q Consensus 243 -~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~ 297 (503)
.+.. ++|+++|.++.+.||+. ++.++|.+.|+|+|+...+ .++|..+
T Consensus 222 ~~~~~-~~~~~~f~~~~~~KD~~------l~~~~a~~~g~~~p~~~~~-~~~~~~a 269 (296)
T PRK15461 222 NKVLK-GDLSPAFMIDLAHKDLG------IALDVANQLHVPMPLGAAS-REVYSQA 269 (296)
T ss_pred chhcc-CCCCCCcchHHHHhhHH------HHHHHHHHcCCCChHHHHH-HHHHHHH
Confidence 4443 56899999999999996 9999999999999998765 5555544
No 16
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=100.00 E-value=3e-38 Score=316.45 Aligned_cols=260 Identities=22% Similarity=0.288 Sum_probs=232.8
Q ss_pred EEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhHHHHH
Q 010702 11 LAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTI 90 (503)
Q Consensus 11 IIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v~~vl 90 (503)
|||+|.||.+||++|+++||+|.+|||++++.+.+.+.+ +..+.++.+++++ +|+||+|||++.++++++
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g-------~~~~~s~~~~~~~---advVil~vp~~~~~~~v~ 70 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAG-------AQAAASPAEAAEG---ADRVITMLPAGQHVISVY 70 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcC-------CeecCCHHHHHhc---CCEEEEeCCChHHHHHHH
Confidence 689999999999999999999999999999998887654 4567789998887 999999999987889998
Q ss_pred ---HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-cccCCCCHHHHHHHHHHHHHHh
Q 010702 91 ---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVA 166 (503)
Q Consensus 91 ---~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i~~gg~~~a~~~v~~ll~~ig 166 (503)
+++.+.+.+|++|||+||..|..++++.+.+.++|++|+++||+||+.++..|+ .+|+||+++.+++++++|+.++
T Consensus 71 ~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g 150 (288)
T TIGR01692 71 SGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMG 150 (288)
T ss_pred cCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhc
Confidence 788888899999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred cccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhh---
Q 010702 167 AQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADI--- 243 (503)
Q Consensus 167 ~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~--- 243 (503)
++++|+|+.|+|+.+|+++|.+.++.+++++|++.++++.| +|++++.+++ +.+.+.||..+.+.+.
T Consensus 151 ------~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~G-ld~~~~~~~~---~~~~~~s~~~~~~~~~~~~ 220 (288)
T TIGR01692 151 ------RNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLG-LDPKVLFEIA---NTSSGRCWSSDTYNPVPGV 220 (288)
T ss_pred ------CCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCCccCcHHHHhCCCccc
Confidence 88999999999999999999999999999999999999999 9999999998 5667778877765442
Q ss_pred ---ccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 010702 244 ---FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSG 297 (503)
Q Consensus 244 ---l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~ 297 (503)
....++|+++|.++.+.||++ ++.+.|.+.|+|+|+...+ .+.|..+
T Consensus 221 ~~~~~~~~~~~~~f~~~~~~KDl~------~~~~~a~~~g~~~p~~~~~-~~~~~~a 270 (288)
T TIGR01692 221 MPQAPASNGYQGGFGTALMLKDLG------LAQDAAKSAGAPTPLGALA-RQLYSLF 270 (288)
T ss_pred cccccccCCCCCCcchHHHHhhHH------HHHHHHHHcCCCChHHHHH-HHHHHHH
Confidence 112256889999999999996 9999999999999988765 4555443
No 17
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=2.6e-37 Score=360.39 Aligned_cols=262 Identities=17% Similarity=0.282 Sum_probs=241.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
.+|||||+|.||.+||.||+++||+|.+|||++++++++.+.| ...++|+.|++++ +|+||+|||++.++
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~G-------a~~~~s~~e~a~~---advVi~~l~~~~~v 74 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELG-------GHRCDSPAEAAKD---AAALVVVLSHPDQV 74 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcC-------CeecCCHHHHHhc---CCEEEEEcCChHHH
Confidence 5799999999999999999999999999999999999998765 4678999999998 99999999999999
Q ss_pred HHHH---HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcC--ccEecccCCCChhhhhcCC-cccCCCCHHHHHHHHH
Q 010702 87 DQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKG--LLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRD 160 (503)
Q Consensus 87 ~~vl---~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~g--i~~i~~pvsgg~~~a~~G~-~i~~gg~~~a~~~v~~ 160 (503)
++|+ +++++.+.+|++|||+||..|..++++.+.++++| +.|+|+||+||+.+++.|. ++|+||+++++++++|
T Consensus 75 ~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p 154 (1378)
T PLN02858 75 DDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQP 154 (1378)
T ss_pred HHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHHH
Confidence 9998 57888899999999999999999999999999999 9999999999999999999 9999999999999999
Q ss_pred HHHHHhcccCCCCcEEEe-CCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhh
Q 010702 161 ILQKVAAQVDDGPCVTYI-GEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEI 239 (503)
Q Consensus 161 ll~~ig~~~~~~~~v~~~-G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~ 239 (503)
+|+.+| +.++++ |+.|+|+.+|+++|.+.++.+++++|++.++++.| ++++.+.+++ +.+.+.|++++.
T Consensus 155 ~l~~~g------~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~G-ld~~~l~~vl---~~s~g~s~~~~~ 224 (1378)
T PLN02858 155 FLSAMC------QKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAG-IHPWIIYDII---SNAAGSSWIFKN 224 (1378)
T ss_pred HHHHhc------CceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCCccCHHHHh
Confidence 999999 778764 99999999999999999999999999999999999 9999999998 567788999998
Q ss_pred hhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHh
Q 010702 240 TADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296 (503)
Q Consensus 240 ~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s 296 (503)
+.+.+.. ++|.++|.++++.||++ +++++|.++|+|+|+...+ .++|..
T Consensus 225 ~~~~~~~-~d~~~~F~l~l~~KDl~------la~~~A~~~g~~lpl~~~a-~~~~~~ 273 (1378)
T PLN02858 225 HVPLLLK-DDYIEGRFLNVLVQNLG------IVLDMAKSLPFPLPLLAVA-HQQLIS 273 (1378)
T ss_pred hhhHhhc-CCCCCCchhHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHH
Confidence 8876655 56899999999999997 9999999999999998765 455543
No 18
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=1e-36 Score=306.71 Aligned_cols=265 Identities=21% Similarity=0.308 Sum_probs=237.0
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
|+|+|||||+|.||..+|.+|+++|++|.+|||++++.+++.+.+ +..+.++++++++ +|+||+|+|+..
T Consensus 1 ~~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g-------~~~~~~~~e~~~~---~d~vi~~vp~~~ 70 (296)
T PRK11559 1 MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAG-------AETASTAKAVAEQ---CDVIITMLPNSP 70 (296)
T ss_pred CCceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCC-------CeecCCHHHHHhc---CCEEEEeCCCHH
Confidence 357899999999999999999999999999999999988876643 4567788998877 999999999888
Q ss_pred hHHHHH---HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-cccCCCCHHHHHHHHH
Q 010702 85 PVDQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRD 160 (503)
Q Consensus 85 ~v~~vl---~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i~~gg~~~a~~~v~~ 160 (503)
.++.++ +++.+.+.+|++|+|+||..|..++++.+.+.++|++|+++|++|++..+..|. .+|+||++++++++++
T Consensus 71 ~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ 150 (296)
T PRK11559 71 HVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYD 150 (296)
T ss_pred HHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHH
Confidence 888887 567888899999999999999999999999999999999999999999999998 9999999999999999
Q ss_pred HHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhh
Q 010702 161 ILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240 (503)
Q Consensus 161 ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~ 240 (503)
+|+.++ ..++++|+.|+|+.+|+++|.+.++.+++++|++.++++.| ++++++.+++ ..+.+.|++++..
T Consensus 151 ~l~~~~------~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G-i~~~~~~~~l---~~~~~~s~~~~~~ 220 (296)
T PRK11559 151 LMKAMA------GSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAG-VNPDLVYQAI---RGGLAGSTVLDAK 220 (296)
T ss_pred HHHHhc------CCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCcccCHHHHhh
Confidence 999999 78999999999999999999999999999999999999999 9999999887 5677788888887
Q ss_pred hhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 010702 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSG 297 (503)
Q Consensus 241 ~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~ 297 (503)
.+.+.. ++|.++|.++...||+. .+++.|++.|+|+|+...+ ..+|..+
T Consensus 221 ~~~~~~-~d~~~~f~~~~~~KDl~------~~~~~a~~~g~~~p~~~~~-~~~~~~~ 269 (296)
T PRK11559 221 APMVMD-RNFKPGFRIDLHIKDLA------NALDTSHGVGAPLPLTAAV-MEMMQAL 269 (296)
T ss_pred chHhhc-CCCCCCcchHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHHH
Confidence 766544 46888999999999986 8999999999999998865 4555443
No 19
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=100.00 E-value=1.8e-36 Score=304.16 Aligned_cols=262 Identities=21% Similarity=0.354 Sum_probs=235.7
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhHH
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVD 87 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v~ 87 (503)
+|||||+|.||.+||.+|+++||+|++|||++++.+.+.+.+ ...+.++.+++++ +|+||+|+|+..+++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~~~~~~---aDivi~~vp~~~~~~ 70 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAG-------AVTAETARQVTEQ---ADVIFTMVPDSPQVE 70 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCC-------CcccCCHHHHHhc---CCEEEEecCCHHHHH
Confidence 599999999999999999999999999999999998887654 3456788888887 999999999988888
Q ss_pred HHH---HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-cccCCCCHHHHHHHHHHHH
Q 010702 88 QTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQ 163 (503)
Q Consensus 88 ~vl---~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i~~gg~~~a~~~v~~ll~ 163 (503)
.++ .++.+.+.+|.+|||+||..|.+++++.+.++++|++|+++|++|++..+..|. .+|+||+++++++++++|+
T Consensus 71 ~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~ 150 (291)
T TIGR01505 71 EVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFE 150 (291)
T ss_pred HHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHH
Confidence 887 457777889999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred HHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhh
Q 010702 164 KVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADI 243 (503)
Q Consensus 164 ~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~ 243 (503)
.++ ++++++|+.|.|+.+|+++|.+....+++++|++.++++.| ++++++.+++ ..+.+.|++++.+.+.
T Consensus 151 ~lg------~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G-id~~~~~~~l---~~~~~~s~~~~~~~~~ 220 (291)
T TIGR01505 151 ALG------KNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAG-VDPVRVRQAL---RGGLAGSTVLEVKGER 220 (291)
T ss_pred Hhc------CCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCcccCHHHHhhChh
Confidence 999 78999999999999999999999999999999999999999 9999999998 4566789998888776
Q ss_pred ccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 010702 244 FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSG 297 (503)
Q Consensus 244 l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~ 297 (503)
+.. ++|.++|.++.+.||+. ++++.|.+.|+|+|+...+ .++|..+
T Consensus 221 ~~~-~~~~~~f~~~~~~KDl~------~~~~~a~~~g~~~~~~~~~-~~~~~~a 266 (291)
T TIGR01505 221 VID-RTFKPGFRIDLHQKDLN------LALDSAKAVGANLPNTATV-QELFNTL 266 (291)
T ss_pred hhc-CCCCCCcchHHHHHHHH------HHHHHHHHcCCCChhHHHH-HHHHHHH
Confidence 654 56889999999999996 8999999999999998875 4555443
No 20
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=1.1e-35 Score=346.80 Aligned_cols=270 Identities=18% Similarity=0.254 Sum_probs=242.0
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 1 M~~~~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
|+..++++|||||+|.||.+||.+|+++||+|.+|||++++.+.+.+.+ ...+.++.+++++ +|+||+||
T Consensus 319 ~~~~~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G-------a~~~~s~~e~~~~---aDvVi~~V 388 (1378)
T PLN02858 319 MQAKPVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAG-------GLAGNSPAEVAKD---VDVLVIMV 388 (1378)
T ss_pred ccccCCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-------CeecCCHHHHHhc---CCEEEEec
Confidence 4444557899999999999999999999999999999999999887764 3457899999988 99999999
Q ss_pred CCChhHHHHH---HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHh--cCccEecccCCCChhhhhcCC-cccCCCCHHH
Q 010702 81 KAGSPVDQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ--KGLLYLGMGVSGGEEGARHGP-SLMPGGSFEA 154 (503)
Q Consensus 81 p~~~~v~~vl---~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~--~gi~~i~~pvsgg~~~a~~G~-~i~~gg~~~a 154 (503)
|++.++++++ .++++.+.+|++|||+||+.|..++++.+.+++ +|++|+++||+||+.++..|+ ++|+||++++
T Consensus 389 ~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~ 468 (1378)
T PLN02858 389 ANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGTDEA 468 (1378)
T ss_pred CChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEECCHHH
Confidence 9988999998 467788889999999999999999999999998 899999999999999999999 9999999999
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEe-CCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcc
Q 010702 155 YNNIRDILQKVAAQVDDGPCVTYI-GEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELE 233 (503)
Q Consensus 155 ~~~v~~ll~~ig~~~~~~~~v~~~-G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~ 233 (503)
+++++|+|+.++ +.++++ |+.|+|+.+|+++|.+.+..+++++|++.++++.| +|++.+.+++ +.+.+.
T Consensus 469 ~~~~~plL~~lg------~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~G-ld~~~l~evl---~~s~g~ 538 (1378)
T PLN02858 469 LKSAGSVLSALS------EKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLG-LNTRKLFDII---SNAGGT 538 (1378)
T ss_pred HHHHHHHHHHHh------CcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---Hhhccc
Confidence 999999999999 778875 67999999999999999999999999999999999 9999999998 456678
Q ss_pred hhHHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhcc
Q 010702 234 SFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGL 298 (503)
Q Consensus 234 s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~~ 298 (503)
||.++.+.+.+.. ++|+++|.++.+.||+. ++++.|.++|+|+|+...+ .++|..+.
T Consensus 539 s~~~~~~~~~~l~-~d~~~~f~l~l~~KDl~------l~~~~a~~~g~~~pl~~~~-~~~~~~a~ 595 (1378)
T PLN02858 539 SWMFENRVPHMLD-NDYTPYSALDIFVKDLG------IVSREGSSRKIPLHLSTVA-HQLFLAGS 595 (1378)
T ss_pred Chhhhhccchhhc-CCCCCCchhHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHHHH
Confidence 8988877766654 56889999999999996 9999999999999988764 55665543
No 21
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.97 E-value=2.2e-31 Score=244.62 Aligned_cols=159 Identities=27% Similarity=0.468 Sum_probs=142.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
|++|||||+|.||.+||++|+++||+|++|||++++.+++.+.+ ++.++|++|++++ +|+||+|||++.+
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g-------~~~~~s~~e~~~~---~dvvi~~v~~~~~ 70 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAG-------AEVADSPAEAAEQ---ADVVILCVPDDDA 70 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTT-------EEEESSHHHHHHH---BSEEEE-SSSHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhh-------hhhhhhhhhHhhc---ccceEeecccchh
Confidence 57999999999999999999999999999999999999998864 5789999999998 9999999999999
Q ss_pred HHHHHHH--HHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-cccCCCCHHHHHHHHHHH
Q 010702 86 VDQTIAA--LSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDIL 162 (503)
Q Consensus 86 v~~vl~~--l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i~~gg~~~a~~~v~~ll 162 (503)
+++++.+ +.+.+.+|++|||+||..|..++++.+.+.++|++|+|+||+||+.+++.|+ ++|+||+++++++++|+|
T Consensus 71 v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l 150 (163)
T PF03446_consen 71 VEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLL 150 (163)
T ss_dssp HHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHH
T ss_pred hhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccCCHHHHHHHHHHH
Confidence 9999988 9999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHhcccCCCCcEEE-eCC
Q 010702 163 QKVAAQVDDGPCVTY-IGE 180 (503)
Q Consensus 163 ~~ig~~~~~~~~v~~-~G~ 180 (503)
+.++ .+++| +|+
T Consensus 151 ~~~~------~~v~~~~G~ 163 (163)
T PF03446_consen 151 EAMG------KNVYHYVGP 163 (163)
T ss_dssp HHHE------EEEEEE-ES
T ss_pred HHHh------CCceeeeCc
Confidence 9999 77884 475
No 22
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.96 E-value=1.2e-27 Score=251.45 Aligned_cols=251 Identities=18% Similarity=0.170 Sum_probs=206.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh---------------cccCCCCeeeeCCHHHHHhccC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA---------------HREGQLPLTGHYTPRDFVLSIQ 71 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~---------------~~~g~~~i~~~~s~~e~~~~l~ 71 (503)
|+|+|||+|.||.++|.+|+++||+|++||+++++++.+.+.. ...| +++.+.++.++++.
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g--~l~~~~~~~~~~~~-- 76 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAG--RLRATTDYEDAIRD-- 76 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcC--CeEEECCHHHHHhh--
Confidence 4899999999999999999999999999999999988776421 0011 35677788887776
Q ss_pred CCcEEEEecCCCh---------hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc--Ccc-EecccCCCChhh
Q 010702 72 RPRSVIILVKAGS---------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK--GLL-YLGMGVSGGEEG 139 (503)
Q Consensus 72 ~~dvIil~vp~~~---------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~--gi~-~i~~pvsgg~~~ 139 (503)
+|+||+|||++. .+..+++++.+.+++|++||++||..|.+++++...+.++ |.. +.+.|++++|+.
T Consensus 77 -advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~ 155 (411)
T TIGR03026 77 -ADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEF 155 (411)
T ss_pred -CCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCc
Confidence 999999999874 3778888999999999999999999999999887666544 443 667888888888
Q ss_pred hhcCC---------cccCCCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 010702 140 ARHGP---------SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLK 210 (503)
Q Consensus 140 a~~G~---------~i~~gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~ 210 (503)
+..|. .+++|+++++.++++++|+.++. ..++++++.+.|+.+|+++|.+.+..+++++|+..+++
T Consensus 156 ~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la~ 230 (411)
T TIGR03026 156 LREGNAVHDLLNPDRIVGGETEEAGEAVAELYAPIIE-----DGPVLVTSIETAEMIKLAENTFRAVKIAFANELARICE 230 (411)
T ss_pred CCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhcc-----CCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87776 57899999999999999999971 25888999999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCch--hHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHH
Q 010702 211 HVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGE--LVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAA 288 (503)
Q Consensus 211 ~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~--~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~ 288 (503)
+.| +|.+++.+++. .+. .+.. ..|.|+| ....+.||+. +.+..|.++|+++|++.+
T Consensus 231 ~~G-iD~~~v~~~~~---~~~----------~i~~--~~~~pg~g~gg~c~~KD~~------~l~~~a~~~g~~~~l~~~ 288 (411)
T TIGR03026 231 ALG-IDVYEVIEAAG---TDP----------RIGF--NFLNPGPGVGGHCIPKDPL------ALIYKAKELGYNPELIEA 288 (411)
T ss_pred HhC-CCHHHHHHHhC---CCC----------CCCC--CcCCCCCCCCCCchhhhHH------HHHHHHHhcCCCcHHHHH
Confidence 999 99999999872 221 1111 2355554 4566888885 888999999999999887
Q ss_pred H
Q 010702 289 S 289 (503)
Q Consensus 289 A 289 (503)
+
T Consensus 289 ~ 289 (411)
T TIGR03026 289 A 289 (411)
T ss_pred H
Confidence 6
No 23
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.92 E-value=7.6e-24 Score=222.10 Aligned_cols=206 Identities=13% Similarity=0.078 Sum_probs=169.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh------------ccCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL------------SIQRP 73 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~------------~l~~~ 73 (503)
+++|+|||+|.||.++|.+|+++||+|++||+++++++.+.... .. + ....+++++. .++.+
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~-~~----~-~e~~l~~~l~~~~~~g~l~~~~~~~~a 76 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGE-IH----I-VEPDLDMVVKTAVEGGYLRATTTPEPA 76 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCC-CC----c-CCCCHHHHHHHHhhcCceeeecccccC
Confidence 36899999999999999999999999999999999998754321 10 0 0112222211 02249
Q ss_pred cEEEEecCCC---------hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCcc--------------Eec
Q 010702 74 RSVIILVKAG---------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL--------------YLG 130 (503)
Q Consensus 74 dvIil~vp~~---------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~--------------~i~ 130 (503)
|+||+|||++ ..+..+++++.+.+++|++||+.||+.|..++++...+.+++.. ++.
T Consensus 77 Dvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~ 156 (415)
T PRK11064 77 DAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAY 156 (415)
T ss_pred CEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEE
Confidence 9999999987 57888889999999999999999999999999998888765432 355
Q ss_pred cc--CCCChhhhhcCC-cccCCC-CHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHH
Q 010702 131 MG--VSGGEEGARHGP-SLMPGG-SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAY 206 (503)
Q Consensus 131 ~p--vsgg~~~a~~G~-~i~~gg-~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~ 206 (503)
+| +.+|...+..+. ..++|| +++++++++++|+.++ +.++++++.++|+.+|+++|.+.+..+++++|+.
T Consensus 157 ~PE~~~~G~~~~~~~~~~~vvgG~~~~~~~~~~~ly~~~~------~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~ 230 (415)
T PRK11064 157 CPERVLPGQVMVELIKNDRVIGGMTPVCSARASELYKIFL------EGECVVTNSRTAEMCKLTENSFRDVNIAFANELS 230 (415)
T ss_pred CCCccCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhc------CCCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56 666665555555 567788 9999999999999999 6778999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHH
Q 010702 207 DVLKHVGGLSNAELAEIF 224 (503)
Q Consensus 207 ~l~~~~g~~~~~~i~~~~ 224 (503)
.++++.| +|..++.+.+
T Consensus 231 ~lae~~G-iD~~~v~~~~ 247 (415)
T PRK11064 231 LICADQG-INVWELIRLA 247 (415)
T ss_pred HHHHHhC-CCHHHHHHHh
Confidence 9999999 9999999886
No 24
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.92 E-value=2.5e-24 Score=219.81 Aligned_cols=284 Identities=13% Similarity=0.053 Sum_probs=205.0
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhccc----C-CC--CeeeeCCHHHHHhccCCC
Q 010702 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE----G-QL--PLTGHYTPRDFVLSIQRP 73 (503)
Q Consensus 1 M~~~~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~----g-~~--~i~~~~s~~e~~~~l~~~ 73 (503)
|++ +|+|+|||+|.||..+|.+|+++||+|++|+|++++.+.+...+... + .+ ++..+++++++++. +
T Consensus 1 ~~~--~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~---a 75 (328)
T PRK14618 1 MHH--GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAG---A 75 (328)
T ss_pred CCC--CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcC---C
Confidence 555 35899999999999999999999999999999999888877542110 0 00 14567788887776 9
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCC-Chhh--HHHHHHHHHh---cCccEecccCCCChhhhhcCC-cc
Q 010702 74 RSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNE-WYLN--TERRIHEASQ---KGLLYLGMGVSGGEEGARHGP-SL 146 (503)
Q Consensus 74 dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~-~~~~--t~~~~~~l~~---~gi~~i~~pvsgg~~~a~~G~-~i 146 (503)
|+||+++|+. ++++++ +.+.++.++|+++++ .+.. .+.+.+.+.+ +++.+++.|......+...+. .+
T Consensus 76 D~Vi~~v~~~-~~~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~ 150 (328)
T PRK14618 76 DFAVVAVPSK-ALRETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATV 150 (328)
T ss_pred CEEEEECchH-HHHHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEE
Confidence 9999999996 566665 445678899999995 4443 5566666655 566666666554443333455 77
Q ss_pred cCCCCHHHHHHHHHHHHHHhcccCCCCcEE--------EeCC---------cchhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 010702 147 MPGGSFEAYNNIRDILQKVAAQVDDGPCVT--------YIGE---------GGSGNFVKMVHNGIEYGDMQLISEAYDVL 209 (503)
Q Consensus 147 ~~gg~~~a~~~v~~ll~~ig~~~~~~~~v~--------~~G~---------~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~ 209 (503)
+.|++++.+++++++|+..+. .++ +++. .|.+..+|+.+|......++.++|++.++
T Consensus 151 ~~~~~~~~~~~v~~ll~~~~~------~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la 224 (328)
T PRK14618 151 VASPEPGLARRVQAAFSGPSF------RVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFG 224 (328)
T ss_pred EEeCCHHHHHHHHHHhCCCcE------EEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence 899999999999999998883 343 3443 58999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHhcc-CCcchhHHhhhh--hhcccc---ccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCc
Q 010702 210 KHVGGLSNAELAEIFDEWNK-GELESFLVEITA--DIFKVK---DEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAA 283 (503)
Q Consensus 210 ~~~g~~~~~~i~~~~~~~~~-g~~~s~l~~~~~--~~l~~~---~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~ 283 (503)
++.| ++++++.++....+- ++..|+..+.+. ..+.+. +++.++|.+....||+. .+.+.+.++++++
T Consensus 225 ~~~G-~~~~~~~~~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~~~~~~~~~~~~g~kd~~------~~~~la~~~~~~~ 297 (328)
T PRK14618 225 VALG-AEEATFYGLSGLGDLIATATSPHSRNRAAGEAIVRGVDREHLEAGGKVVEGLYTVK------ALDAWAKAHGHDL 297 (328)
T ss_pred HHhC-CCccchhcCcchhheeeEeccCCCccHHHHHHHhCCCCHHHHHHcCCEEecHHHHH------HHHHHHHHhCCCC
Confidence 9999 999999887521000 233455555542 123322 12344566667777774 8999999999999
Q ss_pred chHHHHHHHHHHhcchHHHHHHHHHh
Q 010702 284 PTIAASLDCRYLSGLKEEREKAAKVL 309 (503)
Q Consensus 284 p~~~~Av~~r~~s~~~~~r~~~~~~~ 309 (503)
|++..+ .+.+...+++.......+
T Consensus 298 Pl~~~~--~~~~~~~~~~~~~~~~~~ 321 (328)
T PRK14618 298 PIVEAV--ARVARGGWDPLAGLRSLM 321 (328)
T ss_pred CHHHHH--HHHHhCCCCHHHHHHHHh
Confidence 998754 355555556666665555
No 25
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.91 E-value=2.9e-23 Score=217.74 Aligned_cols=249 Identities=12% Similarity=0.115 Sum_probs=185.0
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhccc------------CCCCeeeeCCHHHHHhccCC
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE------------GQLPLTGHYTPRDFVLSIQR 72 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~------------g~~~i~~~~s~~e~~~~l~~ 72 (503)
..|||||||+|.||.++|.+|++ ||+|++||+++++++.+. .|... + ++...++. +.+++
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g--~l~~t~~~-~~~~~--- 76 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREAR--YLKFTSEI-EKIKE--- 76 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhC--CeeEEeCH-HHHcC---
Confidence 34799999999999999999887 699999999999999987 33210 0 12333333 45555
Q ss_pred CcEEEEecCCC---------hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHh--cCccEec--------ccC
Q 010702 73 PRSVIILVKAG---------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ--KGLLYLG--------MGV 133 (503)
Q Consensus 73 ~dvIil~vp~~---------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~--~gi~~i~--------~pv 133 (503)
+|++|+|||++ ..+....+.+.+.+++|++||+.||+.|.+++++.+...+ .|..+.+ .++
T Consensus 77 advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v 156 (425)
T PRK15182 77 CNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERI 156 (425)
T ss_pred CCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcC
Confidence 99999999987 3445555788899999999999999999999976554433 3655544 356
Q ss_pred CCChhhhhcCC--cccCCCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 010702 134 SGGEEGARHGP--SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKH 211 (503)
Q Consensus 134 sgg~~~a~~G~--~i~~gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~ 211 (503)
.+|......+. .++.|++++..+.++++++.+.. ..++++++.++|+++|+++|.+.+..+++++|+..++++
T Consensus 157 ~~G~a~~~~~~~~riv~G~~~~~~~~~~~ly~~~~~-----~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~ 231 (425)
T PRK15182 157 NPGDKKHRLTNIKKITSGSTAQIAELIDEVYQQIIS-----AGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNR 231 (425)
T ss_pred CCCcccccccCCCeEEECCCHHHHHHHHHHHHHHhh-----cCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665554443 57778888888999999999872 246788999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHH
Q 010702 212 VGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (503)
Q Consensus 212 ~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~A 289 (503)
.| +|..++.+++ +.. |.+....+ +.+++ .-+-+|.. ..+..|.++|++.+++.+|
T Consensus 232 ~G-iD~~~v~~a~---~~~----~~~~~~~p-----G~vGG----~ClpkD~~------~L~~~a~~~g~~~~l~~~a 286 (425)
T PRK15182 232 LN-IDTEAVLRAA---GSK----WNFLPFRP-----GLVGG----HCIGVDPY------YLTHKSQGIGYYPEIILAG 286 (425)
T ss_pred hC-cCHHHHHHHh---cCC----CCcccCCC-----Ccccc----ccccccHH------HHHHHHHhcCCCcHHHHHH
Confidence 99 9999999885 111 21111100 11222 23444542 4456788999998888766
No 26
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.91 E-value=1.3e-23 Score=214.05 Aligned_cols=283 Identities=12% Similarity=0.068 Sum_probs=192.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccC---C----CCeeeeCCHHHHHhccCCCcEEEE
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREG---Q----LPLTGHYTPRDFVLSIQRPRSVII 78 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g---~----~~i~~~~s~~e~~~~l~~~dvIil 78 (503)
||||+|||+|.||..+|.+|+++|++|++|+|++++++.+.+.+.... . .++....+++++++. +|+||+
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~D~vi~ 77 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALAD---ADLILV 77 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhC---CCEEEE
Confidence 468999999999999999999999999999999999888876531100 0 024566788877776 999999
Q ss_pred ecCCChhHHHHHHHHHhcCCCCCEEEecCCC-ChhhHHHHHHHHHhc-----CccEecccCCCChhhhhcCC-cccCCCC
Q 010702 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNE-WYLNTERRIHEASQK-----GLLYLGMGVSGGEEGARHGP-SLMPGGS 151 (503)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~-~~~~t~~~~~~l~~~-----gi~~i~~pvsgg~~~a~~G~-~i~~gg~ 151 (503)
|||+ ..++++++++.+.+.++++||+++++ .+...+++.+.+.+. ...++..|..+....+..+. .++.|++
T Consensus 78 ~v~~-~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~~~ 156 (325)
T PRK00094 78 AVPS-QALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIASTD 156 (325)
T ss_pred eCCH-HHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEEeCC
Confidence 9999 58999999999988899999999844 443344444555443 23345556554443333334 5667789
Q ss_pred HHHHHHHHHHHHHHhcccCCCCcEEEeCC-----------------cchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCC
Q 010702 152 FEAYNNIRDILQKVAAQVDDGPCVTYIGE-----------------GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGG 214 (503)
Q Consensus 152 ~~a~~~v~~ll~~ig~~~~~~~~v~~~G~-----------------~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~ 214 (503)
.+.++++.++|+..+ ..+.+..+ .|.+..+|+.+|.+....++.++|++.++++.|
T Consensus 157 ~~~~~~~~~~l~~~~------~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G- 229 (325)
T PRK00094 157 EELAERVQELFHSPY------FRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALG- 229 (325)
T ss_pred HHHHHHHHHHhCCCC------EEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhC-
Confidence 999999999999887 33433322 378888999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhcc-CCcchhHHhhhh--hhccccccC-----CCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchH
Q 010702 215 LSNAELAEIFDEWNK-GELESFLVEITA--DIFKVKDEY-----GEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTI 286 (503)
Q Consensus 215 ~~~~~i~~~~~~~~~-g~~~s~l~~~~~--~~l~~~~~~-----~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~ 286 (503)
++++.+.++...-+. ....|+..+.+. ..+.....+ ..+ .+....||+. .++++|.++|+|+|+.
T Consensus 230 ~d~~~~~~~~~~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~kd~~------~~~~~a~~~~~~~P~~ 302 (325)
T PRK00094 230 ANPETFLGLAGLGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIG-MVAEGVRTAK------AVYELAKKLGVEMPIT 302 (325)
T ss_pred CChhhhhcccHhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcC-CEeecHHHHH------HHHHHHHHhCCCCCHH
Confidence 999998776421000 001111111111 111110100 000 1223345553 7889999999999998
Q ss_pred HHHHHHHHHhcchHHHHHHHHH
Q 010702 287 AASLDCRYLSGLKEEREKAAKV 308 (503)
Q Consensus 287 ~~Av~~r~~s~~~~~r~~~~~~ 308 (503)
.++ . +.+...++.+..+..+
T Consensus 303 ~~~-~-~~~~~~~~~~~~~~~~ 322 (325)
T PRK00094 303 EAV-Y-AVLYEGKDPREAVEDL 322 (325)
T ss_pred HHH-H-HHHcCCCCHHHHHHHH
Confidence 864 3 4455556566555444
No 27
>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....
Probab=99.91 E-value=1.7e-24 Score=211.67 Aligned_cols=118 Identities=14% Similarity=0.290 Sum_probs=94.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcchhhHh
Q 010702 328 KRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFA 407 (503)
Q Consensus 328 ~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~~~~~~ 407 (503)
||||||||||||||+||.|+|+|++|+...+..+ .++.+|++.||.| .|+||||+++.++|++++..+..|+|.+.+
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~--~ei~~vf~~Wn~g-~l~S~Lieit~~il~~~d~~g~~lld~I~d 77 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSN--EEIADVFEEWNKG-ELRSYLIEITADILRKKDETGGPLLDKILD 77 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--H--HHHHHHHHHHHTT-TT-BHHHHHHHHHHT-B-TTSSBGGGGB-S
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccch--hHHHHHHHHHCcC-chhhHHHHHHHHHHhhccCccCcchhhhCC
Confidence 7999999999999999999999999997643222 4677778889988 699999999999999877666789999999
Q ss_pred HHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCCcc
Q 010702 408 REMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLP 450 (503)
Q Consensus 408 ~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~--y~~~~~~~~~~ 450 (503)
...++|+| +|++++|++.|||+|+|++||+ ++++++.+|..
T Consensus 78 ~a~~kGtG--~Wt~~~a~~~gvp~p~I~~a~~aR~~S~~k~~R~~ 120 (291)
T PF00393_consen 78 KAGQKGTG--KWTVQEALELGVPAPTIAAAVFARFLSAQKEERVA 120 (291)
T ss_dssp ----BSHH--HHHHHHHHHHT---HHHHHHHHHHHHHHTHHHHHH
T ss_pred ccCCCCcc--chHHHHHHHhCCCccHHHHHHHHHHHhcCCcHHHH
Confidence 99999999 9999999999999999999999 78888888764
No 28
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.90 E-value=2e-22 Score=203.87 Aligned_cols=251 Identities=12% Similarity=0.080 Sum_probs=185.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH-----------HhhcccC------CCCeeeeCCHHHHHhc
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETL-----------DRAHREG------QLPLTGHYTPRDFVLS 69 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~~~~~g------~~~i~~~~s~~e~~~~ 69 (503)
++|+|||+|.||.+||.+|+++|++|++||++++..+... +.+...+ .-++....++++++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 5899999999999999999999999999999998776543 2211000 0024677888887776
Q ss_pred cCCCcEEEEecCCChhHHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCCcccC
Q 010702 70 IQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMP 148 (503)
Q Consensus 70 l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~~i~~ 148 (503)
+|+|++|+|+..+++..+ ..+.+.. ++++++.+|++ .....++.+.+...+..+.++|+++.... ....++
T Consensus 83 ---ad~Vi~avpe~~~~k~~~~~~l~~~~-~~~~ii~ssts-~~~~~~la~~~~~~~~~~~~hp~~p~~~~---~lveiv 154 (308)
T PRK06129 83 ---ADYVQESAPENLELKRALFAELDALA-PPHAILASSTS-ALLASAFTEHLAGRERCLVAHPINPPYLI---PVVEVV 154 (308)
T ss_pred ---CCEEEECCcCCHHHHHHHHHHHHHhC-CCcceEEEeCC-CCCHHHHHHhcCCcccEEEEecCCCcccC---ceEEEe
Confidence 999999999976666554 5555544 45566665554 44566777777767778888999763211 123455
Q ss_pred ---CCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010702 149 ---GGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFD 225 (503)
Q Consensus 149 ---gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~ 225 (503)
+++++++++++++++.+| +.++++++.+.|+ +.|.+ .+++++|++.++++.| +|++++++++.
T Consensus 155 ~~~~t~~~~~~~~~~~~~~lG------~~~v~v~~~~~G~----i~nrl---~~a~~~EA~~l~~~g~-~~~~~id~~~~ 220 (308)
T PRK06129 155 PAPWTAPATLARAEALYRAAG------QSPVRLRREIDGF----VLNRL---QGALLREAFRLVADGV-ASVDDIDAVIR 220 (308)
T ss_pred CCCCCCHHHHHHHHHHHHHcC------CEEEEecCCCccH----HHHHH---HHHHHHHHHHHHHcCC-CCHHHHHHHHH
Confidence 489999999999999999 8899999888887 33444 4478899999999998 99999999973
Q ss_pred HhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHH
Q 010702 226 EWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLD 291 (503)
Q Consensus 226 ~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~ 291 (503)
.+.+.+|.+ ..+.... |.+++++....+.++.. +..+.+.+.+.|.|++..-+.
T Consensus 221 ---~~~g~~~~~--~gp~~~~-d~~~~~g~~~~~~k~~~------l~~~~~~~~~~~~~~~~~~~~ 274 (308)
T PRK06129 221 ---DGLGLRWSF--MGPFETI-DLNAPGGVADYAQRYGP------MYRRMAAERGQPVPWDGELVA 274 (308)
T ss_pred ---hccCCCccC--cCHHHHH-hccccccHHHHHHHHHH------HHHhhccccCCCchhhHHHHH
Confidence 555566554 3343332 45667788888888875 777888889999998876543
No 29
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.90 E-value=2.3e-22 Score=208.60 Aligned_cols=200 Identities=16% Similarity=0.193 Sum_probs=162.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcc-----------cCCCCeeeeCCHHHHHhccCCCcE
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR-----------EGQLPLTGHYTPRDFVLSIQRPRS 75 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~-----------~g~~~i~~~~s~~e~~~~l~~~dv 75 (503)
|||+|||+|.||.++|..|+. ||+|++||+++++++.+.+.... ....+++...++.+++.+ +|+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~---ad~ 76 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRD---ADY 76 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcC---CCE
Confidence 489999999999999987775 99999999999999888752100 000134445557777766 999
Q ss_pred EEEecCCC----------hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-
Q 010702 76 VIILVKAG----------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP- 144 (503)
Q Consensus 76 Iil~vp~~----------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~- 144 (503)
||+|||++ ..++++++++.+ +++|++||+.||+.|.+++++.+.+.+.++.| +|+.++.|.
T Consensus 77 vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~-------~PE~l~~G~a 148 (388)
T PRK15057 77 VIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENIIF-------SPEFLREGKA 148 (388)
T ss_pred EEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEEE-------CcccccCCcc
Confidence 99999987 577888888887 68999999999999999999998887766555 344555553
Q ss_pred --------cccCCCCHHHHHHHHHHHHH--HhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCC
Q 010702 145 --------SLMPGGSFEAYNNIRDILQK--VAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGG 214 (503)
Q Consensus 145 --------~i~~gg~~~a~~~v~~ll~~--ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~ 214 (503)
.++.|++++..+++.++|.. ++. ...+++++.++|.++|+++|.+.+..+++++|+..++++.|
T Consensus 149 ~~d~~~p~rvv~G~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~G- 222 (388)
T PRK15057 149 LYDNLHPSRIVIGERSERAERFAALLQEGAIKQ-----NIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLG- 222 (388)
T ss_pred cccccCCCEEEEEcCcHHHHHHHHHHHhhhhcC-----CCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 57889988888999898854 441 23347899999999999999999999999999999999999
Q ss_pred CCHHHHHHHH
Q 010702 215 LSNAELAEIF 224 (503)
Q Consensus 215 ~~~~~i~~~~ 224 (503)
+|.+++.+++
T Consensus 223 iD~~eV~~a~ 232 (388)
T PRK15057 223 LNTRQIIEGV 232 (388)
T ss_pred cCHHHHHHHh
Confidence 9999999987
No 30
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.88 E-value=1.5e-23 Score=207.83 Aligned_cols=122 Identities=11% Similarity=0.197 Sum_probs=109.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCC-CCCCcc
Q 010702 324 HVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPN-LASLVV 402 (503)
Q Consensus 324 ~~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~-~~~ll~ 402 (503)
++++||||||||||||||+||.++|.|++||..-.... .++.+|+.-||.| .+.|||+++++++|+.+++ ..+.|+
T Consensus 175 ~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~--~ei~~vF~~WN~g-eL~SYLIeIT~~IL~~kD~~~~kplv 251 (473)
T COG0362 175 PDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSA--EEIAEVFEEWNKG-ELDSYLIEITADILRKKDEEGGKPLV 251 (473)
T ss_pred CCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCH--HHHHHHHHHhccC-cchHHHHHHHHHHHhhcCcccCCchH
Confidence 46899999999999999999999999999997654443 5566667779999 9999999999999997654 456999
Q ss_pred hhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCCcc
Q 010702 403 DPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLP 450 (503)
Q Consensus 403 ~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~--y~~~~~~~~~~ 450 (503)
|.+++.+.||+|| ||+++.|+++|+|+|.|++|++ |+++++.+|..
T Consensus 252 d~ILD~AgQKGTG--kWt~~~AldlGvP~t~I~eaVfAR~lSs~K~eR~~ 299 (473)
T COG0362 252 DKILDKAGQKGTG--KWTVISALDLGVPLTLITEAVFARYLSSLKDERVA 299 (473)
T ss_pred HHHHHHhcCCCcc--hhhHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999999 9999999999999999999999 89999988864
No 31
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.88 E-value=3.8e-22 Score=201.86 Aligned_cols=260 Identities=15% Similarity=0.164 Sum_probs=185.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
.|||+|||+|.||++||.+|+++||+|.+|+|++. .++++++++ +|+||+++|+ ..
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~--------------------~~~~~~~~~---advvi~~vp~-~~ 59 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG--------------------LSLAAVLAD---ADVIVSAVSM-KG 59 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC--------------------CCHHHHHhc---CCEEEEECCh-HH
Confidence 36899999999999999999999999999999853 256677776 9999999999 48
Q ss_pred HHHHHHHHHhc-CCCCCEEEecCC-CChhhHHHHHHHHHhcCccEecccCC--CChhhhh---c--CC-cccCCCCHHHH
Q 010702 86 VDQTIAALSEH-MSPGDCIIDGGN-EWYLNTERRIHEASQKGLLYLGMGVS--GGEEGAR---H--GP-SLMPGGSFEAY 155 (503)
Q Consensus 86 v~~vl~~l~~~-l~~g~iIId~st-~~~~~t~~~~~~l~~~gi~~i~~pvs--gg~~~a~---~--G~-~i~~gg~~~a~ 155 (503)
++++++++.++ +.++.+||++++ ..|.......+.+.. +|.+.|+. +|+..+. . +. .+++|++.+++
T Consensus 60 ~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~---~~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~ 136 (308)
T PRK14619 60 VRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQA---AFPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAA 136 (308)
T ss_pred HHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHH---HcCCCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHH
Confidence 99999888774 778999999987 444433334444433 35566763 4443332 2 23 78889999999
Q ss_pred HHHHHHHHHHhcccCCCCcEEEeCC-----------------cchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 010702 156 NNIRDILQKVAAQVDDGPCVTYIGE-----------------GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNA 218 (503)
Q Consensus 156 ~~v~~ll~~ig~~~~~~~~v~~~G~-----------------~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~ 218 (503)
++++++|+..+ ..+++.++ .|.+...|+.+|......++++.|++.++++.| ++++
T Consensus 137 ~~v~~ll~~~~------~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G-~~~~ 209 (308)
T PRK14619 137 ETVQQIFSSER------FRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLG-AQTE 209 (308)
T ss_pred HHHHHHhCCCc------EEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhC-CCcc
Confidence 99999999888 45664444 233455669999999999999999999999999 9998
Q ss_pred HHHHHHHHhccCCcchhHHhhhhhhccccccCCCchh------HHHHHhhcCCcchH----HHHHHHHHHcCCCcchHHH
Q 010702 219 ELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGEL------VDKILDKTGMKGTG----KWTVQQAAELSVAAPTIAA 288 (503)
Q Consensus 219 ~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~------ld~i~~~~~~kgtG----~~~~~~A~~~gvp~p~~~~ 288 (503)
.+.++ .|.+++++. ...... ++|..+|. ++.+.+.+.+..+| +.+.+.+.++|+++|++.+
T Consensus 210 t~~~~-----~g~gd~~~t---~~~~~~-rn~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~Pl~~~ 280 (308)
T PRK14619 210 TFYGL-----SGLGDLLAT---CTSPLS-RNYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQNIAVPITEQ 280 (308)
T ss_pred ccccc-----cchhhhhee---ecCCCC-ccHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHcCCCCCHHHH
Confidence 88764 245554441 111111 22333333 33334444433333 3677899999999999986
Q ss_pred HHHHHHHhcchHHHHHHHHHhc
Q 010702 289 SLDCRYLSGLKEEREKAAKVLK 310 (503)
Q Consensus 289 Av~~r~~s~~~~~r~~~~~~~~ 310 (503)
+ .+.+...++.+.....++.
T Consensus 281 v--~~i~~~~~~~~~~~~~l~~ 300 (308)
T PRK14619 281 V--YRLLQGEITPQQALEELME 300 (308)
T ss_pred H--HHHHcCCCCHHHHHHHHHc
Confidence 4 4556666677777777664
No 32
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.86 E-value=3.1e-22 Score=195.22 Aligned_cols=122 Identities=10% Similarity=0.147 Sum_probs=112.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcch
Q 010702 324 HVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVD 403 (503)
Q Consensus 324 ~~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~~ 403 (503)
++++|||||||||||||++||.++|.|++|+.+.+..+ .++++++.-||.| ++.|+|+++++++|+-+++....|+|
T Consensus 179 ~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~--~eia~vF~~WN~g-eleSfLieIT~dIlk~~d~~G~~lv~ 255 (487)
T KOG2653|consen 179 EGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSN--DEIAEVFDDWNKG-ELESFLIEITADILKFKDEDGKPLVD 255 (487)
T ss_pred CCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcH--HHHHHHHHhhccc-chhHHHHHHhHHHhheeccCCChHHH
Confidence 56899999999999999999999999999998776665 7888888889999 99999999999999876666678999
Q ss_pred hhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCCcc
Q 010702 404 PEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLP 450 (503)
Q Consensus 404 ~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~--y~~~~~~~~~~ 450 (503)
.+.+.+.||++| +|+|+.|+++|+|+|+|.+|++ ++++.+.+|..
T Consensus 256 kI~D~aGqKGTG--kwt~~~Ale~g~Pv~lI~eavfaRclS~lKdeR~~ 302 (487)
T KOG2653|consen 256 KILDKAGQKGTG--KWTVISALELGVPVTLIGEAVFARCLSALKDERVR 302 (487)
T ss_pred HHHhhhcCCCcc--HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 9999999999999999999999 89999988864
No 33
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.84 E-value=2.1e-19 Score=183.01 Aligned_cols=200 Identities=11% Similarity=0.059 Sum_probs=159.2
Q ss_pred CcEEEEcccHH--------------------HHHHHHHHHhCCCcEEEEeCChhHH-----HHHHHhhcccCCCCeeeeC
Q 010702 7 SRIGLAGLAVM--------------------GQNLALNVAEKGFPISVYNRTTSKV-----DETLDRAHREGQLPLTGHY 61 (503)
Q Consensus 7 ~~IgIIGlG~m--------------------G~~lA~~L~~~G~~V~v~dr~~~~~-----~~l~~~~~~~g~~~i~~~~ 61 (503)
|||.|+|+|+- |.+||.+|+++||+|++|||+++.. +.+.+. ++..+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~-------Gi~~as 73 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDA-------GVKVVS 73 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHC-------CCEEeC
Confidence 57888888864 7889999999999999999998743 333332 356778
Q ss_pred CHHHHHhccCCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhH-HHHHHHHH----hcCccEec-ccCCC
Q 010702 62 TPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNT-ERRIHEAS----QKGLLYLG-MGVSG 135 (503)
Q Consensus 62 s~~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t-~~~~~~l~----~~gi~~i~-~pvsg 135 (503)
++.+++++ +|+||+|+|.+..+++++.++.+.++++.+|||+||+.+... +.+.+.+. ..|+++.+ +++.|
T Consensus 74 d~~eaa~~---ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~G 150 (342)
T PRK12557 74 DDAEAAKH---GEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPG 150 (342)
T ss_pred CHHHHHhC---CCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCccccc
Confidence 88888877 999999999976689999999999999999999999988876 45555554 33665653 45555
Q ss_pred Chhhhh----cCC-cccCCCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 010702 136 GEEGAR----HGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLK 210 (503)
Q Consensus 136 g~~~a~----~G~-~i~~gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~ 210 (503)
++.+.. .|+ +...+++++.+++++++|+.+| .++++++ .|.++.+|+++|.+....++.++|++.+++
T Consensus 151 ae~g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G------~~v~~~~-~g~~~~vk~~~n~l~av~~a~~aE~~~l~~ 223 (342)
T PRK12557 151 TPQHGHYVIAGKTTNGTELATEEQIEKCVELAESIG------KEPYVVP-ADVVSAVADMGSLVTAVALSGVLDYYSVGT 223 (342)
T ss_pred cccchheEEeCCCcccccCCCHHHHHHHHHHHHHcC------CEEEEeC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543322 112 2333459999999999999999 7787777 599999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHH
Q 010702 211 HVGGLSNAELAEIF 224 (503)
Q Consensus 211 ~~g~~~~~~i~~~~ 224 (503)
+.| .+++++.+-+
T Consensus 224 ~~~-~~p~~~~~~~ 236 (342)
T PRK12557 224 KII-KAPKEMIEKQ 236 (342)
T ss_pred HhC-CCHHHHHHHH
Confidence 999 8888876654
No 34
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.83 E-value=5e-20 Score=171.69 Aligned_cols=197 Identities=32% Similarity=0.505 Sum_probs=144.2
Q ss_pred HHHHhccCCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcC
Q 010702 64 RDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHG 143 (503)
Q Consensus 64 ~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G 143 (503)
+++..-|+.-|+||---.+ .-++.+..-.....+|--++|++|+--..- .++|..| +.||++.+...
T Consensus 78 ~~la~~L~~GDivIDGGNS--~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G-------~~~G~~l----MiGG~~~a~~~ 144 (300)
T COG1023 78 DDLAPLLSAGDIVIDGGNS--NYKDSLRRAKLLAEKGIHFLDVGTSGGVWG-------AERGYCL----MIGGDEEAVER 144 (300)
T ss_pred HHHHhhcCCCCEEEECCcc--chHHHHHHHHHHHhcCCeEEeccCCCCchh-------hhcCceE----EecCcHHHHHH
Confidence 4455555667988876543 456666555555568889999998753221 2335443 45666554332
Q ss_pred CcccCCCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCC--HHHHH
Q 010702 144 PSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLS--NAELA 221 (503)
Q Consensus 144 ~~i~~gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~--~~~i~ 221 (503)
- +..++.+.+ ..-| ..|+|+.|+|||+|||||+|+|++||+++|.+.++++.- .| .+++.
T Consensus 145 ~-------~pif~~lA~--ge~G--------yl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~-fD~D~~~VA 206 (300)
T COG1023 145 L-------EPIFKALAP--GEDG--------YLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSP-FDYDLEAVA 206 (300)
T ss_pred H-------HHHHHhhCc--CcCc--------cccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCC-CCCCHHHHH
Confidence 1 111221111 0334 789999999999999999999999999999999999865 54 55555
Q ss_pred HHHHHhccCC-cchhHHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchH
Q 010702 222 EIFDEWNKGE-LESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300 (503)
Q Consensus 222 ~~~~~~~~g~-~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~~~~ 300 (503)
++ ||.|+ .+|||++.+...+++ + .-++.+.+.+...|+|||++++|.++|||+|+|+.|+..||.|...+
T Consensus 207 ~v---W~hGSVIrSWLldLt~~Af~~-d-----~~L~q~~g~v~dSGEGrWTv~~aldlgvpaPVia~al~~Rf~S~~~d 277 (300)
T COG1023 207 EV---WNHGSVIRSWLLDLTAEAFKK-D-----PDLDQISGRVSDSGEGRWTVEEALDLGVPAPVIALALMMRFRSRQDD 277 (300)
T ss_pred HH---HhCcchHHHHHHHHHHHHHhh-C-----CCHHHhcCeeccCCCceeehHHHHhcCCCchHHHHHHHHHHhccchh
Confidence 54 88865 689999999988874 2 26789999999999999999999999999999999999999997553
No 35
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.82 E-value=4.7e-19 Score=190.10 Aligned_cols=195 Identities=14% Similarity=0.143 Sum_probs=151.0
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh---------------cccCCCCeeeeCCHHHHHhc
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA---------------HREGQLPLTGHYTPRDFVLS 69 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~---------------~~~g~~~i~~~~s~~e~~~~ 69 (503)
+.++|||||+|.||.+||.+|+++|++|++||+++++.+.+.+.. ...+ +++.++++++++++
T Consensus 3 ~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g--~i~~~~~~~ea~~~ 80 (495)
T PRK07531 3 MIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEG--RLTFCASLAEAVAG 80 (495)
T ss_pred CcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhh--ceEeeCCHHHHhcC
Confidence 346899999999999999999999999999999999877653210 0000 36778889888877
Q ss_pred cCCCcEEEEecCCChhHHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-ccc
Q 010702 70 IQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLM 147 (503)
Q Consensus 70 l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i~ 147 (503)
+|+|++++|+..++++.+ .++.+.++++ .||++||+.+..+ .+.+.+..++..++++|+... ..++ ..+
T Consensus 81 ---aD~Vieavpe~~~vk~~l~~~l~~~~~~~-~iI~SsTsgi~~s-~l~~~~~~~~r~~~~hP~nP~----~~~~Lvev 151 (495)
T PRK07531 81 ---ADWIQESVPERLDLKRRVLAEIDAAARPD-ALIGSSTSGFLPS-DLQEGMTHPERLFVAHPYNPV----YLLPLVEL 151 (495)
T ss_pred ---CCEEEEcCcCCHHHHHHHHHHHHhhCCCC-cEEEEcCCCCCHH-HHHhhcCCcceEEEEecCCCc----ccCceEEE
Confidence 999999999988777754 6777766665 4667777766544 566667777778888887632 3445 667
Q ss_pred CCCC---HHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHH
Q 010702 148 PGGS---FEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQL-ISEAYDVLKHVGGLSNAELAEI 223 (503)
Q Consensus 148 ~gg~---~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~-~~Ea~~l~~~~g~~~~~~i~~~ 223 (503)
++|+ ++++++++++|+.+| +.+++++. .++|.+...+++. ++|++.|+++.| +++++++++
T Consensus 152 v~g~~t~~e~~~~~~~~~~~lG------~~~v~~~k--------~~~gfi~nrl~~a~~~EA~~L~~~g~-~s~~~id~~ 216 (495)
T PRK07531 152 VGGGKTSPETIRRAKEILREIG------MKPVHIAK--------EIDAFVGDRLLEALWREALWLVKDGI-ATTEEIDDV 216 (495)
T ss_pred cCCCCCCHHHHHHHHHHHHHcC------CEEEeecC--------CCcchhHHHHHHHHHHHHHHHHHcCC-CCHHHHHHH
Confidence 7775 799999999999999 88999874 4555555555666 499999999998 999999999
Q ss_pred HH
Q 010702 224 FD 225 (503)
Q Consensus 224 ~~ 225 (503)
+.
T Consensus 217 ~~ 218 (495)
T PRK07531 217 IR 218 (495)
T ss_pred Hh
Confidence 84
No 36
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.81 E-value=1.1e-18 Score=175.09 Aligned_cols=193 Identities=15% Similarity=0.165 Sum_probs=146.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh-------hcccCCC----------CeeeeCCHHHHHhc
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-------AHREGQL----------PLTGHYTPRDFVLS 69 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-------~~~~g~~----------~i~~~~s~~e~~~~ 69 (503)
++|+|||+|.||.++|.+|+++|++|++||+++++++++.+. +...+.. +++.+.++++.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 479999999999999999999999999999999988776431 1110000 25567788887776
Q ss_pred cCCCcEEEEecCCChhHHHH-HHHHHhcCCCCCEE-EecCCCChhhHHHHHHHHH-hcCccEecccCCCChhhhhcCC-c
Q 010702 70 IQRPRSVIILVKAGSPVDQT-IAALSEHMSPGDCI-IDGGNEWYLNTERRIHEAS-QKGLLYLGMGVSGGEEGARHGP-S 145 (503)
Q Consensus 70 l~~~dvIil~vp~~~~v~~v-l~~l~~~l~~g~iI-Id~st~~~~~t~~~~~~l~-~~gi~~i~~pvsgg~~~a~~G~-~ 145 (503)
+|+||+|+|++.+++.. +.++.+.++++.+| +++||..+....+...... ..|+||+ .|++++ + .
T Consensus 82 ---aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~-~Pv~~~-------~Lv 150 (288)
T PRK09260 82 ---ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFF-NPVHKM-------KLV 150 (288)
T ss_pred ---CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecC-CCcccC-------ceE
Confidence 99999999998777655 47788888888876 6888877654433322211 2488899 788764 4 6
Q ss_pred ccCCC---CHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 010702 146 LMPGG---SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAE 222 (503)
Q Consensus 146 i~~gg---~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~ 222 (503)
.|++| +++++++++++++.++ +.++++++ ..|. +.|.+.+ .+++|++.++++.. .++++++.
T Consensus 151 e~v~g~~t~~~~~~~~~~~l~~lg------~~~v~v~d-~~Gf----~~nRl~~---~~~~ea~~~~~~gv-~~~~~iD~ 215 (288)
T PRK09260 151 ELIRGLETSDETVQVAKEVAEQMG------KETVVVNE-FPGF----VTSRISA---LVGNEAFYMLQEGV-ATAEDIDK 215 (288)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcC------CeEEEecC-cccH----HHHHHHH---HHHHHHHHHHHcCC-CCHHHHHH
Confidence 67777 9999999999999999 88999985 3444 4466544 45699999999876 78999998
Q ss_pred HHH
Q 010702 223 IFD 225 (503)
Q Consensus 223 ~~~ 225 (503)
++.
T Consensus 216 ~~~ 218 (288)
T PRK09260 216 AIR 218 (288)
T ss_pred HHH
Confidence 863
No 37
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.80 E-value=4.3e-18 Score=170.14 Aligned_cols=207 Identities=19% Similarity=0.211 Sum_probs=165.4
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh---------------cccCCCCeeeeCCHHHHHhc
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA---------------HREGQLPLTGHYTPRDFVLS 69 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~---------------~~~g~~~i~~~~s~~e~~~~ 69 (503)
+.++|||||||.+|.++|..++++|++|.++|.++.+++.+.... ...| +++.+++++++..
T Consensus 8 ~~~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g--~lraTtd~~~l~~- 84 (436)
T COG0677 8 MSATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESG--KLRATTDPEELKE- 84 (436)
T ss_pred CceEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcC--CceEecChhhccc-
Confidence 447899999999999999999999999999999999988765321 1111 4566667766553
Q ss_pred cCCCcEEEEecCCCh---------hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc--CccE-ecccCCCCh
Q 010702 70 IQRPRSVIILVKAGS---------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK--GLLY-LGMGVSGGE 137 (503)
Q Consensus 70 l~~~dvIil~vp~~~---------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~--gi~~-i~~pvsgg~ 137 (503)
||++|+|||++. .+.+..+.+.+.|++|++||--||+.|.+|+++...+.+. |..| .|..+.-.|
T Consensus 85 ---~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysP 161 (436)
T COG0677 85 ---CDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSP 161 (436)
T ss_pred ---CCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCc
Confidence 999999998752 4667778999999999999999999999999999987664 3433 233233333
Q ss_pred hhhhcCC---------cccCCCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHH
Q 010702 138 EGARHGP---------SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDV 208 (503)
Q Consensus 138 ~~a~~G~---------~i~~gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l 208 (503)
+....|. -++.|-++++.+.+..+++.+- ..+..+.+.-.+.++|+..|.+...++++++|..-+
T Consensus 162 ERv~PG~~~~el~~~~kVIgG~tp~~~e~a~~lY~~iv------~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali 235 (436)
T COG0677 162 ERVLPGNVLKELVNNPKVIGGVTPKCAELAAALYKTIV------EGVIPVTSARTAEMVKLTENTFRDVNIALANELALI 235 (436)
T ss_pred cccCCCchhhhhhcCCceeecCCHHHHHHHHHHHHHhe------EEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 3333332 3445557888899999999998 668888889999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHH
Q 010702 209 LKHVGGLSNAELAEIF 224 (503)
Q Consensus 209 ~~~~g~~~~~~i~~~~ 224 (503)
+++.| ++..++.++.
T Consensus 236 ~~~~G-IdvwevIeaA 250 (436)
T COG0677 236 CNAMG-IDVWEVIEAA 250 (436)
T ss_pred HHHhC-CcHHHHHHHh
Confidence 99999 9999888875
No 38
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.79 E-value=1.8e-17 Score=164.20 Aligned_cols=235 Identities=15% Similarity=0.120 Sum_probs=165.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC----cEEEE-eCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF----PISVY-NRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~----~V~v~-dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
|||||||+|.||.+|+++|.++|+ +|++| ||++++.+.+.+.+ +..+.++.+++++ +|+||+|+|
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g-------~~~~~~~~e~~~~---aDvVil~v~ 70 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLG-------VKTAASNTEVVKS---SDVIILAVK 70 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcC-------CEEeCChHHHHhc---CCEEEEEEC
Confidence 589999999999999999999998 89999 99999988776543 5667888888877 999999997
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec-ccCCCChhhhhcCC-cccCCCCHHHHHHHH
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEGARHGP-SLMPGGSFEAYNNIR 159 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsgg~~~a~~G~-~i~~gg~~~a~~~v~ 159 (503)
+ ..+++++.++.+.+.++++||+..++.... .+.+.+.. . +++. +|..+...+..... +...+++++.++.++
T Consensus 71 ~-~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~--~l~~~~~~-~-~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 145 (266)
T PLN02688 71 P-QVVKDVLTELRPLLSKDKLLVSVAAGITLA--DLQEWAGG-R-RVVRVMPNTPCLVGEAASVMSLGPAATADDRDLVA 145 (266)
T ss_pred c-HHHHHHHHHHHhhcCCCCEEEEecCCCcHH--HHHHHcCC-C-CEEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHH
Confidence 5 689999999988888899988875554332 22232222 1 5664 67666554433333 334556899999999
Q ss_pred HHHHHHhcccCCCCcEEEeC---------CcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccC
Q 010702 160 DILQKVAAQVDDGPCVTYIG---------EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKG 230 (503)
Q Consensus 160 ~ll~~ig~~~~~~~~v~~~G---------~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g 230 (503)
++|+.+| . +++++ ..|+|.. +.+.+++.+.|+ +.+.| +++++..+++.+ +
T Consensus 146 ~l~~~~G------~-~~~~~e~~~d~~~~~~g~g~a-------~~~~~~~a~~ea---~~~~G-l~~~~a~~~~~~---~ 204 (266)
T PLN02688 146 TLFGAVG------K-IWVVDEKLLDAVTGLSGSGPA-------YIFLAIEALADG---GVAAG-LPRDVALSLAAQ---T 204 (266)
T ss_pred HHHHhCC------C-EEEeCHHHcchhHhhhcCHHH-------HHHHHHHHHHHH---HHHcC-CCHHHHHHHHHH---H
Confidence 9999999 6 77764 3466554 356678888888 67788 999999998743 2
Q ss_pred CcchhHHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHH
Q 010702 231 ELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIA 287 (503)
Q Consensus 231 ~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~ 287 (503)
...++.+ +...+ ..+ -+.+......-||..-.+....+.|++-.++.
T Consensus 205 ~~gs~~l------~~~~~-~~~---~~l~~~v~spgG~t~~~l~~l~~~g~~~~~~~ 251 (266)
T PLN02688 205 VLGAAKM------VLETG-KHP---GQLKDMVTSPGGTTIAGVHELEKGGFRAALMN 251 (266)
T ss_pred HHHHHHH------HHhcC-CCH---HHHHHhCCCCchHHHHHHHHHHHCChHHHHHH
Confidence 2222221 22111 222 22333344455676667777778888866555
No 39
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.78 E-value=8.2e-18 Score=180.38 Aligned_cols=188 Identities=14% Similarity=0.159 Sum_probs=145.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHH-----------HHhhcccC------CCCeeeeCCHHHHHhc
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDET-----------LDRAHREG------QLPLTGHYTPRDFVLS 69 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l-----------~~~~~~~g------~~~i~~~~s~~e~~~~ 69 (503)
.+|||||+|.||.+||.+|+.+||+|++||++++.+++. .+.+.-.. --+++.+.+++++. +
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~~~-~ 86 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALADLA-D 86 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhC-C
Confidence 579999999999999999999999999999999988774 22221000 00367788887654 4
Q ss_pred cCCCcEEEEecCCChhHHHHH-HHHHhcCCCCCEEE-ecCCCChhhHHHHHHHHH--h--cCccEec-ccCCCChhhhhc
Q 010702 70 IQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCII-DGGNEWYLNTERRIHEAS--Q--KGLLYLG-MGVSGGEEGARH 142 (503)
Q Consensus 70 l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iII-d~st~~~~~t~~~~~~l~--~--~gi~~i~-~pvsgg~~~a~~ 142 (503)
||+||.|||++.++++.+ .++...++++.++. ++||..+. +++..+. + .|+||++ +|++.
T Consensus 87 ---aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~---~la~~~~~p~r~~G~hff~Pa~v~~------- 153 (507)
T PRK08268 87 ---CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSIT---AIAAALKHPERVAGLHFFNPVPLMK------- 153 (507)
T ss_pred ---CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---HHHhhcCCcccEEEEeecCCcccCe-------
Confidence 999999999999999887 56666677888884 77777664 3444433 2 3899999 77772
Q ss_pred CCcccCC---CCHHHHHHHHHHHHHHhcccCCCCcEEEeCC-cchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 010702 143 GPSLMPG---GSFEAYNNIRDILQKVAAQVDDGPCVTYIGE-GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNA 218 (503)
Q Consensus 143 G~~i~~g---g~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~-~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~ 218 (503)
-..+++ +++++++++.++++.++ +.++++++ .| ++.|.+.. ..++|++.++++.+ ++++
T Consensus 154 -LvEvv~g~~Ts~~~~~~~~~l~~~lg------k~pv~v~d~pG------fi~Nrll~---~~~~Ea~~l~~~g~-~~~~ 216 (507)
T PRK08268 154 -LVEVVSGLATDPAVADALYALARAWG------KTPVRAKDTPG------FIVNRAAR---PYYTEALRVLEEGV-ADPA 216 (507)
T ss_pred -eEEEeCCCCCCHHHHHHHHHHHHHcC------CceEEecCCCC------hHHHHHHH---HHHHHHHHHHHcCC-CCHH
Confidence 234454 59999999999999999 88999986 45 46676654 47799999999988 9999
Q ss_pred HHHHHHH
Q 010702 219 ELAEIFD 225 (503)
Q Consensus 219 ~i~~~~~ 225 (503)
++++++.
T Consensus 217 ~iD~al~ 223 (507)
T PRK08268 217 TIDAILR 223 (507)
T ss_pred HHHHHHH
Confidence 9999984
No 40
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.78 E-value=1.5e-17 Score=170.66 Aligned_cols=262 Identities=19% Similarity=0.168 Sum_probs=165.4
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCC---C-------CeeeeCCHHHHHhccCCCc
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQ---L-------PLTGHYTPRDFVLSIQRPR 74 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~---~-------~i~~~~s~~e~~~~l~~~d 74 (503)
|||||+|||+|.||..+|..|+++||+|++|+|++. .+.+.+.+..... . ++....+. +.+. .+|
T Consensus 1 ~~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~D 75 (341)
T PRK08229 1 MMARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALA---TAD 75 (341)
T ss_pred CCceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhcc---CCC
Confidence 567999999999999999999999999999999754 4555543321000 0 11223344 3334 399
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecc--c---CCCChhhhh---cCCcc
Q 010702 75 SVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM--G---VSGGEEGAR---HGPSL 146 (503)
Q Consensus 75 vIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~--p---vsgg~~~a~---~G~~i 146 (503)
+||++||.. .+.++++.+.+.+.++++|++++|+.. ..+.+.+.+.+. +++++ + +++++..+. .|+ +
T Consensus 76 ~vil~vk~~-~~~~~~~~l~~~~~~~~iii~~~nG~~-~~~~l~~~~~~~--~~~~g~~~~~~~~~~pg~~~~~~~g~-l 150 (341)
T PRK08229 76 LVLVTVKSA-ATADAAAALAGHARPGAVVVSFQNGVR-NADVLRAALPGA--TVLAGMVPFNVISRGPGAFHQGTSGA-L 150 (341)
T ss_pred EEEEEecCc-chHHHHHHHHhhCCCCCEEEEeCCCCC-cHHHHHHhCCCC--cEEEEEEEEEEEecCCceEEecCCCc-e
Confidence 999999986 678899999999999999999987653 344455554432 23332 2 233332222 333 2
Q ss_pred cCCCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHH--------------------HHHHHHHH
Q 010702 147 MPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGD--------------------MQLISEAY 206 (503)
Q Consensus 147 ~~gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~--------------------~~~~~Ea~ 206 (503)
..+ +.+.++++.++|+..+ ..+.+.++.+.+.+.|++.|.+.... ..++.|++
T Consensus 151 ~~~-~~~~~~~~~~~l~~~g------~~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~ 223 (341)
T PRK08229 151 AIE-ASPALRPFAAAFARAG------LPLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQREAL 223 (341)
T ss_pred Eec-CCchHHHHHHHHHhcC------CCceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHHHH
Confidence 222 2355688999999888 67889999999999999999643333 37899999
Q ss_pred HHHHHhCCCCHHHHHHHHHHhccC--CcchhHHhhhhhhccccccCCCchhHHHHHhhcCCc-------chHHHHHHHHH
Q 010702 207 DVLKHVGGLSNAELAEIFDEWNKG--ELESFLVEITADIFKVKDEYGEGELVDKILDKTGMK-------GTGKWTVQQAA 277 (503)
Q Consensus 207 ~l~~~~g~~~~~~i~~~~~~~~~g--~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~k-------gtG~~~~~~A~ 277 (503)
.++++.| ++++.+.++..++... .+.+++++.....+...+ +... ..+.+|.... =.| +.++.|+
T Consensus 224 ~va~a~G-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~Sm~~D~~~~r~tEi~~i~G-~i~~~a~ 297 (341)
T PRK08229 224 RVLKAAG-IRPARLTPLPPAWIPRLLRLPDPLFRRLAGRMLAID-PLAR---SSMSDDLAAGRATEIDWING-EIVRLAG 297 (341)
T ss_pred HHHHHcC-CCccccCCCChhhhhhhhcCChHHHHHHHHHhhccC-CccC---chHHHHHHcCCcchHHHHhh-HHHHHHH
Confidence 9999999 9876543332211100 122333333222221111 1110 1122222100 012 6889999
Q ss_pred HcCCCcchHHHH
Q 010702 278 ELSVAAPTIAAS 289 (503)
Q Consensus 278 ~~gvp~p~~~~A 289 (503)
++|+|+|+...+
T Consensus 298 ~~gv~~P~~~~~ 309 (341)
T PRK08229 298 RLGAPAPVNARL 309 (341)
T ss_pred HcCCCCcHHHHH
Confidence 999999998865
No 41
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.78 E-value=1.4e-17 Score=166.58 Aligned_cols=200 Identities=16% Similarity=0.153 Sum_probs=149.6
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHH-----------HHHhhcccCC------CCeeeeCCH
Q 010702 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDE-----------TLDRAHREGQ------LPLTGHYTP 63 (503)
Q Consensus 1 M~~~~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~-----------l~~~~~~~g~------~~i~~~~s~ 63 (503)
|+..+ .+|||||+|.||.+||..|+.+|++|++||++++.++. +.+.+..... -+++.++++
T Consensus 1 ~~~~~-~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~ 79 (286)
T PRK07819 1 MSDAI-QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL 79 (286)
T ss_pred CCCCc-cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH
Confidence 44443 48999999999999999999999999999999998776 2222211000 045577787
Q ss_pred HHHHhccCCCcEEEEecCCChhHHHHH-HHHHhcC-CCCCEEEecCCCChhhHHHHHHHHHhc--CccEec-ccCCCChh
Q 010702 64 RDFVLSIQRPRSVIILVKAGSPVDQTI-AALSEHM-SPGDCIIDGGNEWYLNTERRIHEASQK--GLLYLG-MGVSGGEE 138 (503)
Q Consensus 64 ~e~~~~l~~~dvIil~vp~~~~v~~vl-~~l~~~l-~~g~iIId~st~~~~~t~~~~~~l~~~--gi~~i~-~pvsgg~~ 138 (503)
++ +++ +|+||.|+|++.+++..+ ..+...+ +++.++++.|++.+..........+++ |+||++ +|+++..+
T Consensus 80 ~~-~~~---~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvE 155 (286)
T PRK07819 80 GD-FAD---RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVE 155 (286)
T ss_pred HH-hCC---CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEE
Confidence 54 455 999999999999999887 4455555 789999998888877666554444555 889998 56776553
Q ss_pred hhhcCCcccCCCCHHHHHHHHHHHH-HHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 010702 139 GARHGPSLMPGGSFEAYNNIRDILQ-KVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSN 217 (503)
Q Consensus 139 ~a~~G~~i~~gg~~~a~~~v~~ll~-~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~ 217 (503)
- ....++++++++++.+++. .++ +.++.+++ ..|.. -|.+ ....++|++.++++.. .++
T Consensus 156 l-----v~~~~T~~~~~~~~~~~~~~~lg------k~pv~v~d-~pGfi----~nRi---~~~~~~Ea~~ll~eGv-~~~ 215 (286)
T PRK07819 156 L-----VPTLVTSEATVARAEEFASDVLG------KQVVRAQD-RSGFV----VNAL---LVPYLLSAIRMVESGF-ATA 215 (286)
T ss_pred E-----eCCCCCCHHHHHHHHHHHHHhCC------CCceEecC-CCChH----HHHH---HHHHHHHHHHHHHhCC-CCH
Confidence 2 3446789999999999988 599 78888865 44544 4555 4455699999999876 789
Q ss_pred HHHHHHHH
Q 010702 218 AELAEIFD 225 (503)
Q Consensus 218 ~~i~~~~~ 225 (503)
++++.++.
T Consensus 216 ~dID~~~~ 223 (286)
T PRK07819 216 EDIDKAMV 223 (286)
T ss_pred HHHHHHHH
Confidence 99999873
No 42
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.78 E-value=1.2e-17 Score=166.73 Aligned_cols=184 Identities=14% Similarity=0.190 Sum_probs=132.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC----CcEEEEeCChh-HHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKG----FPISVYNRTTS-KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G----~~V~v~dr~~~-~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
|||+|||+|.||.+|+.+|.++| ++|.+|||+++ +.+.+.... ++....++.++++. +|+||+|||
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~------g~~~~~~~~e~~~~---aDvVilav~ 74 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKY------GVKGTHNKKELLTD---ANILFLAMK 74 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhc------CceEeCCHHHHHhc---CCEEEEEeC
Confidence 58999999999999999999998 78999999864 556665431 24567788888776 999999999
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEec-CCCChhhHHHHHHHHHhcCccEecccCCCC---hhhhhcC-CcccCCCC---HH
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDG-GNEWYLNTERRIHEASQKGLLYLGMGVSGG---EEGARHG-PSLMPGGS---FE 153 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~-st~~~~~t~~~~~~l~~~gi~~i~~pvsgg---~~~a~~G-~~i~~gg~---~~ 153 (503)
+. .+.+++.++.+.+.++++||++ ++..+...++ .+ ..+ +|++++ ...+..+ .+++++++ ++
T Consensus 75 p~-~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~---~~-~~~-----~~v~r~mPn~~~~~~~~~t~~~~~~~~~~~ 144 (279)
T PRK07679 75 PK-DVAEALIPFKEYIHNNQLIISLLAGVSTHSIRN---LL-QKD-----VPIIRAMPNTSAAILKSATAISPSKHATAE 144 (279)
T ss_pred HH-HHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---Hc-CCC-----CeEEEECCCHHHHHhcccEEEeeCCCCCHH
Confidence 85 7888899998888889999997 5554443333 22 222 344444 2344433 47776765 67
Q ss_pred HHHHHHHHHHHHhcccCCCCcEE------E--eCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010702 154 AYNNIRDILQKVAAQVDDGPCVT------Y--IGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFD 225 (503)
Q Consensus 154 a~~~v~~ll~~ig~~~~~~~~v~------~--~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~ 225 (503)
.++.++++|+.+| .++. + ++..|+|... .+..+..+.|+ +.+.| ++.++..+++.
T Consensus 145 ~~~~v~~l~~~~G------~~~~v~e~~~~~~~a~~Gsgpa~-------~~~~~eal~e~---~~~~G-l~~~~a~~~~~ 207 (279)
T PRK07679 145 HIQTAKALFETIG------LVSVVEEEDMHAVTALSGSGPAY-------IYYVVEAMEKA---AKKIG-LKEDVAKSLIL 207 (279)
T ss_pred HHHHHHHHHHhCC------cEEEeCHHHhhhHHHhhcCHHHH-------HHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 8899999999999 5444 4 5666666552 23334444444 77888 99999999985
Q ss_pred H
Q 010702 226 E 226 (503)
Q Consensus 226 ~ 226 (503)
+
T Consensus 208 ~ 208 (279)
T PRK07679 208 Q 208 (279)
T ss_pred H
Confidence 4
No 43
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.77 E-value=1.1e-16 Score=169.56 Aligned_cols=254 Identities=12% Similarity=0.072 Sum_probs=181.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHhhcc---cC---------CCCeeeeCCHHHHHhccC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDETLDRAHR---EG---------QLPLTGHYTPRDFVLSIQ 71 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~---~g---------~~~i~~~~s~~e~~~~l~ 71 (503)
||+|+|||+|.+|..+|..|+++| ++|+++|+++++++.+.+.... .+ ..++..+++..+.+..
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~-- 78 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAE-- 78 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhc--
Confidence 479999999999999999999885 7899999999999887643210 00 0025667777777766
Q ss_pred CCcEEEEecCCCh--------------hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc--C--ccEecccC
Q 010702 72 RPRSVIILVKAGS--------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK--G--LLYLGMGV 133 (503)
Q Consensus 72 ~~dvIil~vp~~~--------------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~--g--i~~i~~pv 133 (503)
+|++|+|||++. .++++++.+.+.++++++||..||..+.+++++...+.+. | ++..-+|-
T Consensus 79 -advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PE 157 (473)
T PLN02353 79 -ADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPE 157 (473)
T ss_pred -CCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCC
Confidence 999999997543 5778889999999999999999999999999998877753 3 33444553
Q ss_pred CCChhhhh----cCCcccCCCC-----HHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHH
Q 010702 134 SGGEEGAR----HGPSLMPGGS-----FEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISE 204 (503)
Q Consensus 134 sgg~~~a~----~G~~i~~gg~-----~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~E 204 (503)
.=.+-.+. +-+.+++||. +++.+++++++..+.. ..++.+.+.-.+.++|++.|.+.+..+++++|
T Consensus 158 rl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~-----~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~NE 232 (473)
T PLN02353 158 FLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVP-----EERIITTNLWSAELSKLAANAFLAQRISSVNA 232 (473)
T ss_pred ccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhc-----CCCEEecCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32221111 2225666873 3467888889888861 13555667789999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHhccCC--cchhHHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCC
Q 010702 205 AYDVLKHVGGLSNAELAEIFDEWNKGE--LESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVA 282 (503)
Q Consensus 205 a~~l~~~~g~~~~~~i~~~~~~~~~g~--~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp 282 (503)
...+|++.| +|..++.+.+. ... +..|+ ...-.+++. -+-+|.. ..+..|.++|++
T Consensus 233 la~lce~~g-iD~~eV~~~~~---~d~rig~~~l--------~PG~G~GG~----ClpkD~~------~L~~~a~~~g~~ 290 (473)
T PLN02353 233 MSALCEATG-ADVSQVSHAVG---KDSRIGPKFL--------NASVGFGGS----CFQKDIL------NLVYICECNGLP 290 (473)
T ss_pred HHHHHHHhC-CCHHHHHHHhC---CCCcCCCCCC--------CCCCCCCCc----chhhhHH------HHHHHHHHcCCc
Confidence 999999999 99999888862 211 11222 111113232 3345542 455678889988
Q ss_pred --cchHHHH
Q 010702 283 --APTIAAS 289 (503)
Q Consensus 283 --~p~~~~A 289 (503)
.+++.++
T Consensus 291 ~~~~l~~~~ 299 (473)
T PLN02353 291 EVAEYWKQV 299 (473)
T ss_pred hHHHHHHHH
Confidence 6666654
No 44
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.77 E-value=1.9e-16 Score=159.17 Aligned_cols=254 Identities=17% Similarity=0.153 Sum_probs=187.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh---------------hcccCCCCeeeeCCHHHHHhccC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR---------------AHREGQLPLTGHYTPRDFVLSIQ 71 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~---------------~~~~g~~~i~~~~s~~e~~~~l~ 71 (503)
|||+|||+|++|...+..|++.||+|..+|.++++++.+.+. ....| +++.+++.++++++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~g--Rl~fTtd~~~a~~~-- 76 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASG--RLRFTTDYEEAVKD-- 76 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccC--cEEEEcCHHHHHhc--
Confidence 689999999999999999999999999999999998776532 11111 48888999998887
Q ss_pred CCcEEEEecCCCh---------hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhc
Q 010702 72 RPRSVIILVKAGS---------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARH 142 (503)
Q Consensus 72 ~~dvIil~vp~~~---------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~ 142 (503)
+|++|+|||++. .++.+++.+.+.++...+||.-||+.+.+++++.+.+.+....- +..|...|+-.|+
T Consensus 77 -adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLRE 154 (414)
T COG1004 77 -ADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLRE 154 (414)
T ss_pred -CCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcC
Confidence 999999998763 47788899999998879999999999999999988776542110 3334445555555
Q ss_pred C--------C-cccCCCCH-HHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 010702 143 G--------P-SLMPGGSF-EAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHV 212 (503)
Q Consensus 143 G--------~-~i~~gg~~-~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~ 212 (503)
| | .+++|... ++.+.+++++..+..+ ...+..-..-.+.++|+..|++.+.-+..++|.-.+|++.
T Consensus 155 G~Av~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~----~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice~~ 230 (414)
T COG1004 155 GSAVYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQ----DVPILFTDLREAELIKYAANAFLATKISFINEIANICEKV 230 (414)
T ss_pred cchhhhccCCCeEEEccCChhHHHHHHHHHhhhhhc----CCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5 3 56778755 4678888888776431 3344444558899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHH
Q 010702 213 GGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASL 290 (503)
Q Consensus 213 g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av 290 (503)
| +|.+++.+.+. ....-+..| +...-.|++... -||.. ..+..|.++|.+.+++.+.+
T Consensus 231 g-~D~~~V~~gIG-lD~RIG~~f--------l~aG~GyGGsCf----PKD~~------AL~~~a~~~~~~~~ll~avv 288 (414)
T COG1004 231 G-ADVKQVAEGIG-LDPRIGNHF--------LNAGFGYGGSCF----PKDTK------ALIANAEELGYDPNLLEAVV 288 (414)
T ss_pred C-CCHHHHHHHcC-CCchhhHhh--------CCCCCCCCCcCC----cHhHH------HHHHHHHhcCCchHHHHHHH
Confidence 9 99999988862 111111222 222112443322 23332 45678899999988888654
No 45
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.76 E-value=5e-18 Score=171.09 Aligned_cols=133 Identities=26% Similarity=0.437 Sum_probs=113.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcchh
Q 010702 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDP 404 (503)
Q Consensus 325 ~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~~~ 404 (503)
.+.++++|+++|.+.++.+++++|++.|.+++. |++|+++++++|+.||+++|++++...+.+.+++...
T Consensus 165 ~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g----~~ld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~------ 234 (299)
T PRK12490 165 VGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSD----FDFDVEDVARLWRNGSVIRSWLLDLTVKALAEDPKLA------ 234 (299)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----cCCCHHHHHHHHcCCcHHHHHHHHHHHHHHhhCCChh------
Confidence 378999999999999999999999999999764 9999999999999999999999999888886543211
Q ss_pred hHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCCcc-hhHHHhhhhhcCCccccc
Q 010702 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLP-ANLVQAQRDLFGAHTYER 468 (503)
Q Consensus 405 ~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~~~~~~-~~~iqa~rd~fG~H~~~r 468 (503)
.+ +...|-.+..+|++..|.+.|+|+|.++++++|+.....+++| .+.+|+||||||+|+|+.
T Consensus 235 ~l-~~~~KD~~~~~l~~~~A~~~g~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f~~~~~~~ 298 (299)
T PRK12490 235 GI-KGYVNDSGEGRWTVEEAIELAVAAPVIAASLFMRFASQEDDSFHMKVVSALRNQFGGHAVKT 298 (299)
T ss_pred hh-hHHHHhcCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCccCChHHHHHHHHHHhhCCCCCCC
Confidence 12 2222333334889999999999999999999998889999999 999999999999999974
No 46
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.76 E-value=3.2e-17 Score=175.40 Aligned_cols=190 Identities=16% Similarity=0.163 Sum_probs=142.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh-------hcccCCC----------CeeeeCCHHHHHh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-------AHREGQL----------PLTGHYTPRDFVL 68 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-------~~~~g~~----------~i~~~~s~~e~~~ 68 (503)
.++|||||+|.||.+||.+|+.+||+|++||++++.+++..+. ....|.+ +++.+.+++++.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~- 83 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA- 83 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC-
Confidence 3589999999999999999999999999999999987653211 0111100 366788887653
Q ss_pred ccCCCcEEEEecCCChhHHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHH----hcCccEec-ccCCCChhhhhc
Q 010702 69 SIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEAS----QKGLLYLG-MGVSGGEEGARH 142 (503)
Q Consensus 69 ~l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~----~~gi~~i~-~pvsgg~~~a~~ 142 (503)
+ ||+||.|||++.++++.+ .++...++++.+|. ++|+....+ ++++.+. ..|.||++ +|++.
T Consensus 84 ~---aDlVIEav~E~~~vK~~vf~~l~~~~~~~~Ila-snTStl~i~-~iA~~~~~p~r~~G~HFf~Papv~~------- 151 (503)
T TIGR02279 84 D---AGLVIEAIVENLEVKKALFAQLEELCPADTIIA-SNTSSLSIT-AIAAGLARPERVAGLHFFNPAPVMA------- 151 (503)
T ss_pred C---CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEE-ECCCCCCHH-HHHHhcCcccceEEEeccCccccCc-------
Confidence 4 999999999999998886 55666666665554 333333333 3444443 35899999 67773
Q ss_pred CCcccCCC---CHHHHHHHHHHHHHHhcccCCCCcEEEeCC-cchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 010702 143 GPSLMPGG---SFEAYNNIRDILQKVAAQVDDGPCVTYIGE-GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNA 218 (503)
Q Consensus 143 G~~i~~gg---~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~-~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~ 218 (503)
-..+++| ++++++.+.++++.+| +.++++|+ +| ++.|.+. ...++|++.++++.+ ++++
T Consensus 152 -LvEvv~g~~Ts~e~~~~~~~l~~~lg------k~pv~v~d~pG------fi~Nrl~---~~~~~EA~~l~e~g~-a~~~ 214 (503)
T TIGR02279 152 -LVEVVSGLATAAEVAEQLYETALAWG------KQPVHCHSTPG------FIVNRVA---RPYYAEALRALEEQV-AAPA 214 (503)
T ss_pred -eEEEeCCCCCCHHHHHHHHHHHHHcC------CeeeEeCCCCC------cHHHHHH---HHHHHHHHHHHHcCC-CCHH
Confidence 2456777 9999999999999999 88999986 44 2556665 357899999999988 9999
Q ss_pred HHHHHHH
Q 010702 219 ELAEIFD 225 (503)
Q Consensus 219 ~i~~~~~ 225 (503)
++++++.
T Consensus 215 ~ID~al~ 221 (503)
T TIGR02279 215 VLDAALR 221 (503)
T ss_pred HHHHHHH
Confidence 9999985
No 47
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.75 E-value=2.9e-17 Score=163.06 Aligned_cols=288 Identities=16% Similarity=0.188 Sum_probs=195.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCC-------CeeeeCCHHHHHhccCCCcEEEE
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQL-------PLTGHYTPRDFVLSIQRPRSVII 78 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~-------~i~~~~s~~e~~~~l~~~dvIil 78 (503)
+++|+|||.|.+|++||..|+++||+|.+|.|+++.++++.....+..++ ++...++++++++. +|+|++
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~---ad~iv~ 77 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDG---ADIIVI 77 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhc---CCEEEE
Confidence 36899999999999999999999999999999999998887653222112 46678889999887 999999
Q ss_pred ecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHH-HHHhc-C---ccEecccCCCChhhhhcCC--cccCCCC
Q 010702 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIH-EASQK-G---LLYLGMGVSGGEEGARHGP--SLMPGGS 151 (503)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~-~l~~~-g---i~~i~~pvsgg~~~a~~G~--~i~~gg~ 151 (503)
+||. ..+++++.++.+.+.++.+|+.++.+.-..+.++.. .+++. + +.++..|-. ..+-+..-| ..+.+-|
T Consensus 78 avPs-~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~-A~EVa~g~pta~~vas~d 155 (329)
T COG0240 78 AVPS-QALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSF-AKEVAQGLPTAVVVASND 155 (329)
T ss_pred ECCh-HHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccH-HHHHhcCCCcEEEEecCC
Confidence 9999 589999999988999999999999987665554433 33332 3 223333322 234444445 3445568
Q ss_pred HHHHHHHHHHHHHHhccc-----------CC-CCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 010702 152 FEAYNNIRDILQKVAAQV-----------DD-GPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAE 219 (503)
Q Consensus 152 ~~a~~~v~~ll~~ig~~~-----------~~-~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~ 219 (503)
++..++++.+|..=.-++ .+ -|+++.++. |....+.+..|+-...+...++|+.++....| -.+++
T Consensus 156 ~~~a~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~-Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG-~~~~T 233 (329)
T COG0240 156 QEAAEKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAA-GIADGLGLGDNAKAALITRGLAEMTRLGVALG-AKPET 233 (329)
T ss_pred HHHHHHHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHHH-HHHHHhhcChhHHHHHHHhHHHHHHHHHHHhC-CCcch
Confidence 888888888886522110 00 044444433 66666788899999999999999999999999 66775
Q ss_pred HHHHHHHhccCCcchhHHhhhhhhccccccC----CCchhHHHHHhhcCCcchHHHHH----HHHHHcCCCcchHHHHHH
Q 010702 220 LAEIFDEWNKGELESFLVEITADIFKVKDEY----GEGELVDKILDKTGMKGTGKWTV----QQAAELSVAAPTIAASLD 291 (503)
Q Consensus 220 i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~----~~~~~ld~i~~~~~~kgtG~~~~----~~A~~~gvp~p~~~~Av~ 291 (503)
+..+ .|.++ |+-++.....++..| ..+..++..+...+|..+|..++ +.|.++++++|++.+ |.
T Consensus 234 ~~gL-----sGlGD--LilTCts~~SRN~r~G~~lg~g~~~~e~l~~~g~vvEGv~t~k~v~~la~~~~i~mPI~~~-Vy 305 (329)
T COG0240 234 FMGL-----SGLGD--LILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYELAKKLGIEMPITEA-VY 305 (329)
T ss_pred hccc-----ccccc--eeEecCCCccccHHHHHHHhCCCCHHHHHHhcCCeeecHHHHHHHHHHHHHcCCCCCHHHH-HH
Confidence 5433 23323 222222221211111 22345667777778888886655 578889999999875 55
Q ss_pred HHHHhcchHHHHHHHHHh
Q 010702 292 CRYLSGLKEEREKAAKVL 309 (503)
Q Consensus 292 ~r~~s~~~~~r~~~~~~~ 309 (503)
|.+-..++.......++
T Consensus 306 -~vl~~~~~~~~~~~~L~ 322 (329)
T COG0240 306 -RVLYEGLDPKEAIEELM 322 (329)
T ss_pred -HHHhCCCCHHHHHHHHh
Confidence 44444455555554444
No 48
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.75 E-value=2.5e-17 Score=164.48 Aligned_cols=175 Identities=16% Similarity=0.223 Sum_probs=135.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
|+|+|||+|.||.++|..|.++|++|.+||++++..+.+.+.+. +....+..+.+.+ +|+||+|+|.. .+
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~------~~~~~~~~~~~~~---aDlVilavp~~-~~ 70 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGL------VDEASTDLSLLKD---CDLVILALPIG-LL 70 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCC------cccccCCHhHhcC---CCEEEEcCCHH-HH
Confidence 48999999999999999999999999999999998888776542 1222233344555 99999999985 67
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec-ccCCCCh-hhhhcCC-cccC----------CCCHH
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGE-EGARHGP-SLMP----------GGSFE 153 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsgg~-~~a~~G~-~i~~----------gg~~~ 153 (503)
.++++++.+.+.++.+|+|+++......+... +....|++ .|+.|++ .+...+. .++. +++++
T Consensus 71 ~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~~~----~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~ 146 (279)
T PRK07417 71 LPPSEQLIPALPPEAIVTDVGSVKAPIVEAWE----KLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLN 146 (279)
T ss_pred HHHHHHHHHhCCCCcEEEeCcchHHHHHHHHH----HhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHH
Confidence 78889999999899999999988765443332 22345887 6999876 4444333 2222 36889
Q ss_pred HHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHH
Q 010702 154 AYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQL 201 (503)
Q Consensus 154 a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~ 201 (503)
.++.++++++.+| .+++++++.+....++++.+...+....+
T Consensus 147 ~~~~v~~l~~~lG------~~~v~~~~~~hD~~~a~~shlp~~~a~~l 188 (279)
T PRK07417 147 ALAIVEELAVSLG------SKIYTADPEEHDRAVALISHLPVMVSAAL 188 (279)
T ss_pred HHHHHHHHHHHcC------CEEEEcCHHHHHHHHHHHcchHHHHHHHH
Confidence 9999999999999 78999999999999999988876555433
No 49
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.73 E-value=1.8e-16 Score=159.96 Aligned_cols=193 Identities=11% Similarity=0.061 Sum_probs=141.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH-----------hhcccCC--CCeeeeCCHHHHHhccCCC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD-----------RAHREGQ--LPLTGHYTPRDFVLSIQRP 73 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~~~~~g~--~~i~~~~s~~e~~~~l~~~ 73 (503)
.+|||||+|.||.+||.+|+.+|++|.+||++++..+.+.+ .+...+. -+++..+++++++++ |
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~---a 84 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVAD---A 84 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcC---C
Confidence 57999999999999999999999999999999987655432 1100000 045677888888777 9
Q ss_pred cEEEEecCCChhHHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc----CccEecccC-CCChhhhhcCCccc
Q 010702 74 RSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGV-SGGEEGARHGPSLM 147 (503)
Q Consensus 74 dvIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pv-sgg~~~a~~G~~i~ 147 (503)
|+|+.++|+..+++..+ .++.+.++++. ||.+||+.. ...++.+.+... |.||+..|- ..-. -++
T Consensus 85 DlViEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~l-~~s~la~~~~~p~R~~g~HffnP~~~~pLV-------EVv 155 (321)
T PRK07066 85 DFIQESAPEREALKLELHERISRAAKPDA-IIASSTSGL-LPTDFYARATHPERCVVGHPFNPVYLLPLV-------EVL 155 (321)
T ss_pred CEEEECCcCCHHHHHHHHHHHHHhCCCCe-EEEECCCcc-CHHHHHHhcCCcccEEEEecCCccccCceE-------EEe
Confidence 99999999998888776 77878887776 666666643 444555555432 567776542 2111 133
Q ss_pred CC--CCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010702 148 PG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFD 225 (503)
Q Consensus 148 ~g--g~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~ 225 (503)
+| .++++++.+..+++.+| +.++.+..+-.|+. .|.+.+. ++.|++.++++.. .++++|+.++.
T Consensus 156 ~g~~T~~e~~~~~~~f~~~lG------k~pV~v~kd~pGFi----~NRl~~a---~~~EA~~lv~eGv-as~edID~a~~ 221 (321)
T PRK07066 156 GGERTAPEAVDAAMGIYRALG------MRPLHVRKEVPGFI----ADRLLEA---LWREALHLVNEGV-ATTGEIDDAIR 221 (321)
T ss_pred CCCCCCHHHHHHHHHHHHHcC------CEeEecCCCCccHH----HHHHHHH---HHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 33 48999999999999999 88888865555654 4666544 5599999999987 89999999974
No 50
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.73 E-value=2e-16 Score=157.63 Aligned_cols=190 Identities=13% Similarity=0.185 Sum_probs=142.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
|+|+|||+|.||.+||.+|.++|+ +|++|||++++.+.+.+.+. +..+.+++++. + +|+||+|+|+.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~------~~~~~~~~~~~-~---aD~Vilavp~~- 69 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGL------VDEIVSFEELK-K---CDVIFLAIPVD- 69 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCC------CcccCCHHHHh-c---CCEEEEeCcHH-
Confidence 479999999999999999999996 78999999998887765442 12345666654 3 99999999995
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecc-cCCCC----hhhhh----cCC-cccCC---CC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGG----EEGAR----HGP-SLMPG---GS 151 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsgg----~~~a~----~G~-~i~~g---g~ 151 (503)
.+.+++.++.+ +.++++|+|++++.....+.+.+. .+..|+++ |++|+ +..+. .|. .++++ ++
T Consensus 70 ~~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~---~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~ 145 (275)
T PRK08507 70 AIIEILPKLLD-IKENTTIIDLGSTKAKIIESVPKH---IRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSG 145 (275)
T ss_pred HHHHHHHHHhc-cCCCCEEEECccchHHHHHHHHHh---cCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCC
Confidence 67888899999 889999999988765544433322 23568886 99875 44332 455 45553 57
Q ss_pred HHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010702 152 FEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEI 223 (503)
Q Consensus 152 ~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~ 223 (503)
++.++.++++|+.+| .+++++++.+....++++++.- +....+++++.. .+ .+.+++.++
T Consensus 146 ~~~~~~v~~l~~~~G------~~~~~~~~~~hD~~~a~vs~lp-h~~a~~l~~~~~----~~-~~~~~~~~~ 205 (275)
T PRK08507 146 EKHQERAKEIFSGLG------MRIVYMDAKEHDLHAAYISHLP-HIISFALANTVL----KE-EDERNIFDL 205 (275)
T ss_pred HHHHHHHHHHHHHhC------CEEEEeCHHHHHHHHHHHhHHH-HHHHHHHHHHHH----hc-CChHHHHhh
Confidence 788999999999999 7899999999999999998875 455555555541 24 566655444
No 51
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.72 E-value=4.7e-16 Score=157.67 Aligned_cols=195 Identities=13% Similarity=0.102 Sum_probs=139.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh-----hcc-cCC------CCeeeeCCHHHHHhccCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-----AHR-EGQ------LPLTGHYTPRDFVLSIQRP 73 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-----~~~-~g~------~~i~~~~s~~e~~~~l~~~ 73 (503)
+++|+|||+|.||.+||..|+++|++|++||+++++++.+.+. +.. ... .++..+.++++++++ +
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---a 80 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSG---A 80 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhcc---C
Confidence 4689999999999999999999999999999999988776542 100 000 024556777777766 9
Q ss_pred cEEEEecCCChh-HHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHh----cCccEecccCCCChhhhhcCCcccC
Q 010702 74 RSVIILVKAGSP-VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ----KGLLYLGMGVSGGEEGARHGPSLMP 148 (503)
Q Consensus 74 dvIil~vp~~~~-v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~----~gi~~i~~pvsgg~~~a~~G~~i~~ 148 (503)
|+||+|||+..+ ...++.++.+.++++.+|+..+++. . ..++.+.+.. .++||.++|..+. ...+++
T Consensus 81 DlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~-~-~~~l~~~~~~~~~~ig~h~~~p~~~~~------l~~i~~ 152 (311)
T PRK06130 81 DLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGL-P-ITAIAQAVTRPERFVGTHFFTPADVIP------LVEVVR 152 (311)
T ss_pred CEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCC-C-HHHHHhhcCCcccEEEEccCCCCccCc------eEEEeC
Confidence 999999999754 4566777877776666665444433 2 3355555533 1455555443221 113444
Q ss_pred CC--CHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010702 149 GG--SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFD 225 (503)
Q Consensus 149 gg--~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~ 225 (503)
|. ++++++.+.++|+.+| ++++++++...|. +++|. ....++|++.++++.| ++++++.+++.
T Consensus 153 g~~t~~~~~~~v~~l~~~~G------~~~v~~~~d~~G~---i~nr~----~~~~~~Ea~~l~~~g~-~~~~~id~~~~ 217 (311)
T PRK06130 153 GDKTSPQTVATTMALLRSIG------KRPVLVKKDIPGF---IANRI----QHALAREAISLLEKGV-ASAEDIDEVVK 217 (311)
T ss_pred CCCCCHHHHHHHHHHHHHcC------CEEEEEcCCCCCc---HHHHH----HHHHHHHHHHHHHcCC-CCHHHHHHHHH
Confidence 43 7899999999999999 7889998765666 55555 3467899999999988 99999999973
No 52
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.71 E-value=7.5e-16 Score=154.84 Aligned_cols=191 Identities=16% Similarity=0.202 Sum_probs=136.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc-------ccCCC----------CeeeeCCHHHHHhc
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH-------REGQL----------PLTGHYTPRDFVLS 69 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-------~~g~~----------~i~~~~s~~e~~~~ 69 (503)
++|+|||+|.||.+||.+|+.+|++|.+||++++.++.+.+... ..|.+ +++..+++++ +++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 83 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLED-LAD 83 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHH-hcC
Confidence 58999999999999999999999999999999998776442100 00000 2556667654 444
Q ss_pred cCCCcEEEEecCCChhHHH-HHHHHHhcCCCCCEEE-ecCCCChhhHHHHHHHHHh----cCccEec-ccCCCChhhhhc
Q 010702 70 IQRPRSVIILVKAGSPVDQ-TIAALSEHMSPGDCII-DGGNEWYLNTERRIHEASQ----KGLLYLG-MGVSGGEEGARH 142 (503)
Q Consensus 70 l~~~dvIil~vp~~~~v~~-vl~~l~~~l~~g~iII-d~st~~~~~t~~~~~~l~~----~gi~~i~-~pvsgg~~~a~~ 142 (503)
+|+||+|+|+..+++. ++.++.+.++++.+|+ ++|+..+ + .+++.+.. .|+||++ +|++++.+-
T Consensus 84 ---aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--s-~la~~~~~~~r~~g~h~~~p~~~~~~vei--- 154 (292)
T PRK07530 84 ---CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISI--T-RLASATDRPERFIGIHFMNPVPVMKLVEL--- 154 (292)
T ss_pred ---CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH--H-HHHhhcCCcccEEEeeccCCcccCceEEE---
Confidence 9999999999866654 4578888888999887 4444432 2 45554432 2788888 455544321
Q ss_pred CCcccCCCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 010702 143 GPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAE 222 (503)
Q Consensus 143 G~~i~~gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~ 222 (503)
....+++++.++++.++++.+| +.++++++.+ |. ++ |.+ ...+++|++.++.+.- .++++++.
T Consensus 155 --~~g~~t~~~~~~~~~~~~~~~g------k~~v~~~d~p-g~---i~-nRl---~~~~~~ea~~~~~~g~-~~~~~iD~ 217 (292)
T PRK07530 155 --IRGIATDEATFEAAKEFVTKLG------KTITVAEDFP-AF---IV-NRI---LLPMINEAIYTLYEGV-GSVEAIDT 217 (292)
T ss_pred --eCCCCCCHHHHHHHHHHHHHcC------CeEEEecCcC-Ch---HH-HHH---HHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 1225689999999999999999 8888887633 32 33 443 3455699999999865 68999998
Q ss_pred HH
Q 010702 223 IF 224 (503)
Q Consensus 223 ~~ 224 (503)
++
T Consensus 218 ~~ 219 (292)
T PRK07530 218 AM 219 (292)
T ss_pred HH
Confidence 86
No 53
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.71 E-value=5.2e-16 Score=156.22 Aligned_cols=191 Identities=12% Similarity=0.179 Sum_probs=136.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHH-----------HHhhc--------ccCCCCeeeeCCHHHHH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDET-----------LDRAH--------REGQLPLTGHYTPRDFV 67 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l-----------~~~~~--------~~g~~~i~~~~s~~e~~ 67 (503)
++|+|||+|.||.+||.+|+.+|++|.+||+++++++.. .+.+. ..+ .+...++. +.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~-~~~ 81 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLG--RIRCTTNL-EEL 81 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHh--ceEeeCCH-HHh
Confidence 579999999999999999999999999999999887542 22110 000 13344444 445
Q ss_pred hccCCCcEEEEecCCChhHHHHH-HHHHhcCCCCCEEE-ecCCCChhhHHHHHHH-HHhcCccEecccCCCChhhhhcCC
Q 010702 68 LSIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCII-DGGNEWYLNTERRIHE-ASQKGLLYLGMGVSGGEEGARHGP 144 (503)
Q Consensus 68 ~~l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iII-d~st~~~~~t~~~~~~-l~~~gi~~i~~pvsgg~~~a~~G~ 144 (503)
+. ||+||+|||++.+++..+ .++.+.++++.+|+ ++|+..+....+.... .+-.|+||+++|..+.. .
T Consensus 82 ~~---aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~l------v 152 (295)
T PLN02545 82 RD---ADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKL------V 152 (295)
T ss_pred CC---CCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCce------E
Confidence 55 999999999888877665 67888888888886 6666654433222111 11247888888876422 1
Q ss_pred cccC--CCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 010702 145 SLMP--GGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAE 222 (503)
Q Consensus 145 ~i~~--gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~ 222 (503)
.++. +++++++++++++|+.+| ++++++++ ..|. +.|.+.. ..++|++.++++.. .++++++.
T Consensus 153 eiv~g~~t~~e~~~~~~~ll~~lG------~~~~~~~d-~~g~----i~nri~~---~~~~ea~~~~~~gv-~~~~~iD~ 217 (295)
T PLN02545 153 EIIRGADTSDEVFDATKALAERFG------KTVVCSQD-YPGF----IVNRILM---PMINEAFYALYTGV-ASKEDIDT 217 (295)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcC------CeeEEecC-cccH----HHHHHHH---HHHHHHHHHHHcCC-CCHHHHHH
Confidence 2222 468999999999999999 78888876 2333 4566544 45699999999977 88999998
Q ss_pred HH
Q 010702 223 IF 224 (503)
Q Consensus 223 ~~ 224 (503)
++
T Consensus 218 ~~ 219 (295)
T PLN02545 218 GM 219 (295)
T ss_pred HH
Confidence 76
No 54
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.70 E-value=2.9e-17 Score=173.90 Aligned_cols=118 Identities=17% Similarity=0.290 Sum_probs=102.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCH---HHHHHHHhCCCcchhhhHHHHHHHHhcCCCCC-CC
Q 010702 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNF---GELARIWKGGCIIRAVFLDRIKKAYQRNPNLA-SL 400 (503)
Q Consensus 325 ~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l---~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~-~l 400 (503)
.++|||+||+||+|+|++|++++|+|.|+++.. + +|. .++++.|+.| .++|+++++..++|+++++.+ ..
T Consensus 175 ~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~---g--l~~~~l~~v~~~w~~g-~~~S~l~ei~~~~~~~~d~~~~~~ 248 (470)
T PTZ00142 175 GSSGHYVKMVHNGIEYGDMQLISESYKLMKHIL---G--MSNEELSEVFNKWNEG-ILNSYLIEITAKILAKKDDLGEEH 248 (470)
T ss_pred CCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc---C--CCHHHHHHHHHHHcCC-CccCHHHHHHHHHhhcccccCCCc
Confidence 489999999999999999999999999998432 2 555 4556669998 589999999999999865433 57
Q ss_pred cchhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCCcc
Q 010702 401 VVDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLP 450 (503)
Q Consensus 401 l~~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~--y~~~~~~~~~~ 450 (503)
++|.+.+...++++| ||+|++|+++|||+|+|++||+ ++++++.+|..
T Consensus 249 ~l~~i~d~~~~~gtg--~wt~~~a~~~~v~~p~i~~a~~~R~~S~~k~~r~~ 298 (470)
T PTZ00142 249 LVDKILDIAGSKGTG--KWTVQEALERGIPVPTMAASVDARNISALKEERTK 298 (470)
T ss_pred chhhhcCcccCCchH--HhHHHHHHHcCCCchHHHHHHHHHHhhhhHHHHHH
Confidence 888899999999999 9999999999999999999999 77888887765
No 55
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.69 E-value=8.3e-16 Score=154.40 Aligned_cols=193 Identities=15% Similarity=0.187 Sum_probs=139.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh----------cccCCC----------CeeeeCCHHHH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA----------HREGQL----------PLTGHYTPRDF 66 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~----------~~~g~~----------~i~~~~s~~e~ 66 (503)
.+|+|||+|.||.++|..|+.+|++|++||++++.++...+.. ...+.. ++...++. +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 5899999999999999999999999999999999876533210 000000 13344455 34
Q ss_pred HhccCCCcEEEEecCCChhHH-HHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc----CccEec-ccCCCChhhh
Q 010702 67 VLSIQRPRSVIILVKAGSPVD-QTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLG-MGVSGGEEGA 140 (503)
Q Consensus 67 ~~~l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~-~pvsgg~~~a 140 (503)
+++ +|+||+|+|+...++ .++.++.+.++++.+|+..+++. ...++.+.+... |.||++ ++++++.+.
T Consensus 83 ~~~---aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~--~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv- 156 (291)
T PRK06035 83 LSD---ADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGI--MIAEIATALERKDRFIGMHWFNPAPVMKLIEV- 156 (291)
T ss_pred hCC---CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCC--CHHHHHhhcCCcccEEEEecCCCcccCccEEE-
Confidence 454 999999999976544 45577888888888887655543 444555555432 788888 677776553
Q ss_pred hcCCcccCCCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 010702 141 RHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAEL 220 (503)
Q Consensus 141 ~~G~~i~~gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i 220 (503)
..|+ ..++++++++.++++.+| +.++++++.+.....|+++| +++|++.++++.. .++++|
T Consensus 157 ~~g~----~T~~e~~~~~~~~~~~lg------k~~v~v~d~pgfv~nRl~~~--------~~~ea~~~~~~g~-a~~~~i 217 (291)
T PRK06035 157 VRAA----LTSEETFNTTVELSKKIG------KIPIEVADVPGFFTTRFIEG--------WLLEAIRSFEIGI-ATIKDI 217 (291)
T ss_pred eCCC----CCCHHHHHHHHHHHHHcC------CeEEEeCCCCCeeHHHHHHH--------HHHHHHHHHHcCC-CCHHHH
Confidence 3443 138999999999999999 88999987555555555543 4599999998865 789999
Q ss_pred HHHHH
Q 010702 221 AEIFD 225 (503)
Q Consensus 221 ~~~~~ 225 (503)
+.++.
T Consensus 218 D~~~~ 222 (291)
T PRK06035 218 DEMCK 222 (291)
T ss_pred HHHHh
Confidence 99863
No 56
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.68 E-value=4.9e-15 Score=151.97 Aligned_cols=290 Identities=14% Similarity=0.117 Sum_probs=185.5
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccC----CC----CeeeeCCHHHHHhccCCCcEE
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREG----QL----PLTGHYTPRDFVLSIQRPRSV 76 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g----~~----~i~~~~s~~e~~~~l~~~dvI 76 (503)
.+|||+|||+|.||+.+|..|+++| +|.+|.|+++..+.+.+.+.... .. ++...++++++++. +|+|
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~---aDlV 81 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANC---ADVV 81 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhc---CCEE
Confidence 3579999999999999999999999 78999999999888876532110 00 24566777777766 9999
Q ss_pred EEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHH-HHHHHh----cCccEecccCCCChhhhhcCC--cc-cC
Q 010702 77 IILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERR-IHEASQ----KGLLYLGMGVSGGEEGARHGP--SL-MP 148 (503)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~-~~~l~~----~gi~~i~~pvsgg~~~a~~G~--~i-~~ 148 (503)
|++||. ..++++++++.+.+.++.+||.++++....+.++ .+.+++ ..+..+..|-.- .+. ..|. .+ +.
T Consensus 82 ilavps-~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a-~ev-~~g~~t~~via 158 (341)
T PRK12439 82 VMGVPS-HGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIA-REV-AEGYAAAAVLA 158 (341)
T ss_pred EEEeCH-HHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHH-HHH-HcCCCeEEEEE
Confidence 999998 5899999999999988888998888776532222 222222 111122223111 111 1243 23 33
Q ss_pred CCCHHHHHHHHHHHHHHhccc---CCC---------CcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 010702 149 GGSFEAYNNIRDILQKVAAQV---DDG---------PCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLS 216 (503)
Q Consensus 149 gg~~~a~~~v~~ll~~ig~~~---~~~---------~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~ 216 (503)
+.+++..+.++.+|..-+-++ ++- ++++.++ .|...-+++..|.....+.+.+.|+..+++..| .+
T Consensus 159 ~~~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia-~G~~~g~~~g~n~~aali~~~~~E~~~~~~a~G-~~ 236 (341)
T PRK12439 159 MPDQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIA-VGMGYSLGIGENTRAMVIARALREMTKLGVAMG-GN 236 (341)
T ss_pred eCCHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHH-HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhC-CC
Confidence 446677778888886544221 000 2222222 233334456667766777899999999999998 78
Q ss_pred HHHHHHHHHHhccCCcchhHHhhhhhhccccc----cCCCchhHHHHHhhcCCcchHHHHH----HHHHHcCCCcchHHH
Q 010702 217 NAELAEIFDEWNKGELESFLVEITADIFKVKD----EYGEGELVDKILDKTGMKGTGKWTV----QQAAELSVAAPTIAA 288 (503)
Q Consensus 217 ~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~----~~~~~~~ld~i~~~~~~kgtG~~~~----~~A~~~gvp~p~~~~ 288 (503)
++.+... .|.++ |+-++.....++. .+..+..++.+.+.++|.-+|..++ +.++++++.+|++.+
T Consensus 237 ~~t~~gl-----~G~GD--l~~Tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~EG~~~~~~~~~~~~~~~~~~Pi~~~ 309 (341)
T PRK12439 237 PETFAGL-----AGMGD--LIVTCTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVVMEFADEYGLNMPIARE 309 (341)
T ss_pred ccccccc-----chhhh--hhhhccCCCCccHHHHHHHHCCCCHHHHHHhcCCEEehHHHHHHHHHHHHHhCCCCCHHHH
Confidence 8876543 22222 1111111111111 1123356777777778888886655 578889999999985
Q ss_pred HHHHHHHhcchHHHHHHHHHhccC
Q 010702 289 SLDCRYLSGLKEEREKAAKVLKEA 312 (503)
Q Consensus 289 Av~~r~~s~~~~~r~~~~~~~~~~ 312 (503)
+ .+.+...++....+..++..+
T Consensus 310 -~-~~il~~~~~~~~~~~~l~~~~ 331 (341)
T PRK12439 310 -V-DAVINHGSTVEQAYRGLIAEV 331 (341)
T ss_pred -H-HHHHhCCCCHHHHHHHHhcCC
Confidence 3 466777778888888877543
No 57
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.67 E-value=6e-15 Score=147.90 Aligned_cols=195 Identities=13% Similarity=0.221 Sum_probs=137.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh-------cccCC-----------CCeeeeCCHHHHHh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA-------HREGQ-----------LPLTGHYTPRDFVL 68 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~-----------~~i~~~~s~~e~~~ 68 (503)
++|+|||+|.||.++|..|+.+|++|++||++++.+++..+.. ...+. -+++.+++++++++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 5899999999999999999999999999999998776654320 00000 03567788888777
Q ss_pred ccCCCcEEEEecCCChhH-HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC--c
Q 010702 69 SIQRPRSVIILVKAGSPV-DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP--S 145 (503)
Q Consensus 69 ~l~~~dvIil~vp~~~~v-~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~--~ 145 (503)
. +|+||+|+|+..++ ..++.++.+.++++.+|++.+++.+. .++.+.+.. .-+|++...+..+ ...+ -
T Consensus 84 ~---aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~--~~~~~~~~~-~~r~vg~Hf~~p~---~~~~lve 154 (287)
T PRK08293 84 D---ADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLP--SQFAEATGR-PEKFLALHFANEI---WKNNTAE 154 (287)
T ss_pred C---CCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCH--HHHHhhcCC-cccEEEEcCCCCC---CcCCeEE
Confidence 6 99999999987544 45568888888888888665555433 233333322 2234443222111 1222 3
Q ss_pred cc--CCCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010702 146 LM--PGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEI 223 (503)
Q Consensus 146 i~--~gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~ 223 (503)
++ .+.++++++.+.++++.+| +.++.+.+...|..+ |.+ ...+++|++.++++.. .++++|+.+
T Consensus 155 vv~~~~t~~~~~~~~~~~~~~~G------k~pv~v~~d~pgfi~----nRi---~~~~~~ea~~l~~~g~-a~~~~iD~a 220 (287)
T PRK08293 155 IMGHPGTDPEVFDTVVAFAKAIG------MVPIVLKKEQPGYIL----NSL---LVPFLSAALALWAKGV-ADPETIDKT 220 (287)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcC------CeEEEecCCCCCHhH----HHH---HHHHHHHHHHHHHcCC-CCHHHHHHH
Confidence 33 4578999999999999999 788888765666655 444 3445699999999876 899999988
Q ss_pred H
Q 010702 224 F 224 (503)
Q Consensus 224 ~ 224 (503)
+
T Consensus 221 ~ 221 (287)
T PRK08293 221 W 221 (287)
T ss_pred H
Confidence 6
No 58
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.67 E-value=1.8e-15 Score=156.91 Aligned_cols=178 Identities=14% Similarity=0.150 Sum_probs=142.2
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 6 LSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 6 ~~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
+++|+||| +|.||.++|+.|.++||+|.+|||++. .++++++.+ +|+||+|+|..
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~--------------------~~~~~~~~~---aDlVilavP~~- 153 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW--------------------DRAEDILAD---AGMVIVSVPIH- 153 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc--------------------hhHHHHHhc---CCEEEEeCcHH-
Confidence 46899998 999999999999999999999998631 134556665 99999999996
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEe-cccCCCChhhhhcCC-cccCCC-CHHHHHHHHHH
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGEEGARHGP-SLMPGG-SFEAYNNIRDI 161 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i-~~pvsgg~~~a~~G~-~i~~gg-~~~a~~~v~~l 161 (503)
.+.+++.++.+ +++|.+|+|+|++.......+.+.+. ..|+ ..|++|.+.....|. .+++++ ++++++.+.++
T Consensus 154 ~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~---~~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~~~~~~l 229 (374)
T PRK11199 154 LTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS---GPVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWLLEQ 229 (374)
T ss_pred HHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC---CCEEeeCCCCCCCCcccCCCEEEEcCCCCchHHHHHHHH
Confidence 57888888888 89999999999988766665554332 2588 579999877666666 555555 67889999999
Q ss_pred HHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 010702 162 LQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAE 222 (503)
Q Consensus 162 l~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~ 222 (503)
++.+| .+++++++.+....+++++ .+ ..+..++++..+++ .+ .+.+++.+
T Consensus 230 ~~~lG------~~v~~~~~~~HD~~~a~vs-hL--pH~~a~al~~~l~~-~~-~~~~~~~~ 279 (374)
T PRK11199 230 IQVWG------ARLHRISAVEHDQNMAFIQ-AL--RHFATFAYGLHLAK-EN-VDLEQLLA 279 (374)
T ss_pred HHHCC------CEEEECCHHHHHHHHHHHH-HH--HHHHHHHHHHHHHH-cC-CCHHHHHH
Confidence 99999 7899999999999999997 44 56667788888766 56 77766543
No 59
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.67 E-value=6.8e-15 Score=155.40 Aligned_cols=194 Identities=19% Similarity=0.198 Sum_probs=144.5
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
|+|+||| +|.||.++|..|.++|++|.+|+|++++..++.... ++....++.+++.. +|+||+|+|.. .
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~------gv~~~~~~~e~~~~---aDvVIlavp~~-~ 70 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKEL------GVEYANDNIDAAKD---ADIVIISVPIN-V 70 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHc------CCeeccCHHHHhcc---CCEEEEecCHH-H
Confidence 5899997 899999999999999999999999988765554432 24556677777776 99999999985 7
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecc-cCCCChhhhhcCC-cccCC---CCHHHHHHHHH
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEEGARHGP-SLMPG---GSFEAYNNIRD 160 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsgg~~~a~~G~-~i~~g---g~~~a~~~v~~ 160 (503)
+.+++.++.+.++++.+|+|++++.....+.+.+.+. .+..|+++ |++|.......|. .+++. .+++.++.+++
T Consensus 71 ~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~-~~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ 149 (437)
T PRK08655 71 TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAP-EGVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKN 149 (437)
T ss_pred HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcC-CCCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHH
Confidence 7899999999999999999999988777766665543 47889986 8887655555666 44443 36788999999
Q ss_pred HHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 010702 161 ILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAE 222 (503)
Q Consensus 161 ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~ 222 (503)
+|+.+| ..++++++... -+++.+......+..++.+..+ .+.| ++.++...
T Consensus 150 ll~~~G------~~v~~~~~e~H---D~~~a~vs~lph~~a~al~~~l-~~~g-~~~~~~~~ 200 (437)
T PRK08655 150 FLEKEG------ARVIVTSPEEH---DRIMSVVQGLTHFAYISIASTL-KRLG-VDIKESRK 200 (437)
T ss_pred HHHHcC------CEEEECCHHHH---HHHHHHHHHHHHHHHHHHHHHH-HHcC-CCHHHHHh
Confidence 999999 67888876533 3344333333344444555444 4556 88776543
No 60
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.67 E-value=4.2e-15 Score=148.68 Aligned_cols=193 Identities=19% Similarity=0.228 Sum_probs=136.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHH-----------HHHhhcccC------CCCeeeeCCHHHHHhc
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDE-----------TLDRAHREG------QLPLTGHYTPRDFVLS 69 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~-----------l~~~~~~~g------~~~i~~~~s~~e~~~~ 69 (503)
+||+|||+|.||.++|..|+.+|++|++||+++++++. +.+.+.... .-+++.+++.++ +++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD-LKD 82 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hcc
Confidence 58999999999999999999999999999999998753 222221000 003455666654 444
Q ss_pred cCCCcEEEEecCCChhHH-HHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHh----cCccEec-ccCCCChhhhhcC
Q 010702 70 IQRPRSVIILVKAGSPVD-QTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ----KGLLYLG-MGVSGGEEGARHG 143 (503)
Q Consensus 70 l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~----~gi~~i~-~pvsgg~~~a~~G 143 (503)
||+||+|+|+...++ +++.++.+.++++++|+..+++.+ .+ .+.+.+.. .+.||.. +++.++.+ ...|
T Consensus 83 ---aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~-~~-~la~~~~~~~r~ig~h~~~P~~~~~~ve-v~~g 156 (282)
T PRK05808 83 ---ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLS-IT-ELAAATKRPDKVIGMHFFNPVPVMKLVE-IIRG 156 (282)
T ss_pred ---CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCC-HH-HHHHhhCCCcceEEeeccCCcccCccEE-EeCC
Confidence 999999999876666 677889898988888854444432 22 55555532 2566666 34544443 1111
Q ss_pred CcccCCCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010702 144 PSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEI 223 (503)
Q Consensus 144 ~~i~~gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~ 223 (503)
.+++++.++.+.++++.+| +.++++++ ..|. +.|.+. ..+++|++.++++.- .++++++.+
T Consensus 157 ----~~t~~e~~~~~~~l~~~lG------k~pv~~~d-~~g~----i~~Ri~---~~~~~ea~~~~~~gv-~~~~diD~~ 217 (282)
T PRK05808 157 ----LATSDATHEAVEALAKKIG------KTPVEVKN-APGF----VVNRIL---IPMINEAIFVLAEGV-ATAEDIDEG 217 (282)
T ss_pred ----CCCCHHHHHHHHHHHHHcC------CeeEEecC-ccCh----HHHHHH---HHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 4578999999999999999 88999964 4454 445554 455599999999876 789999988
Q ss_pred HH
Q 010702 224 FD 225 (503)
Q Consensus 224 ~~ 225 (503)
+.
T Consensus 218 ~~ 219 (282)
T PRK05808 218 MK 219 (282)
T ss_pred HH
Confidence 73
No 61
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.66 E-value=1.1e-16 Score=169.61 Aligned_cols=120 Identities=12% Similarity=0.219 Sum_probs=100.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-CCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcch
Q 010702 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGW-NLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVD 403 (503)
Q Consensus 325 ~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w-~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~~ 403 (503)
.++|||+||+||+|+|++|++++|+|.|+++.. +. ..++.++++.|+.| .++|++++....+|+++++....|+|
T Consensus 172 ~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~---g~~~~~l~~v~~~w~~~-~~~S~l~~~~~~~~~~~d~~~~~~l~ 247 (467)
T TIGR00873 172 DGAGHYVKMVHNGIEYGDMQLICEAYDILKDGL---GLSNEEIAEVFTEWNNG-ELDSYLIEITADILKKKDEDGKPLVD 247 (467)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHhcCC-cccchHHHhHHHHHhccCCCCCccHH
Confidence 489999999999999999999999999998433 31 12445566678997 78999999999999985544568889
Q ss_pred hhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCCcc
Q 010702 404 PEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLP 450 (503)
Q Consensus 404 ~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~--y~~~~~~~~~~ 450 (503)
.+.+...++++| ||+|++|+++|||+|+|+++++ +.+.++.+|..
T Consensus 248 ~i~~~~~~~gtg--~wt~~~a~~~~v~~p~i~~av~~R~~S~~k~~r~~ 294 (467)
T TIGR00873 248 KILDTAGQKGTG--KWTAISALDLGVPVTLITESVFARYLSSLKEERVA 294 (467)
T ss_pred hhcCcccCccHH--HHHHHHHHHcCCCchHHHHHHHHHhccccHHHHHH
Confidence 999999999999 9999999999999999999999 55566666654
No 62
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=99.65 E-value=1.6e-16 Score=167.52 Aligned_cols=118 Identities=12% Similarity=0.233 Sum_probs=100.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCH---HHHHHHHhCCCcchhhhHHHHHHHHhcCCC-CCCC
Q 010702 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNF---GELARIWKGGCIIRAVFLDRIKKAYQRNPN-LASL 400 (503)
Q Consensus 325 ~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l---~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~-~~~l 400 (503)
.++|||+||+||+|+|++|+.++|+|.|+++.. + +|. .+|++.|+.| .++|+++++..+++.+++. ....
T Consensus 164 ~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~---G--l~~~~l~~v~~~wn~g-~~~S~l~ei~~~~l~~~d~~~~~~ 237 (459)
T PRK09287 164 DGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGL---G--LSAEEIADVFAEWNKG-ELNSYLIEITADILRQKDEETGKP 237 (459)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C--CCHHHHHHHHHHhcCC-CccChHHHhHhHHHhcCCCCCCCc
Confidence 489999999999999999999999999999422 3 555 4556668998 5899999999999987543 4458
Q ss_pred cchhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCCcc
Q 010702 401 VVDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLP 450 (503)
Q Consensus 401 l~~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~--y~~~~~~~~~~ 450 (503)
++|.+.+...+|++| ||++++|+++|||+|+|++|++ +.+.++.+|..
T Consensus 238 ~~d~i~d~~~~~gtg--~Wt~~~a~~~~v~~~~i~~AvfaR~~S~~k~~r~~ 287 (459)
T PRK09287 238 LVDVILDKAGQKGTG--KWTSQSALDLGVPLTLITEAVFARYLSSLKDQRVA 287 (459)
T ss_pred chHHhcCcccCCcHH--HHHHHHHHHhCCChHHHHHHHHHHhccccHHHHHH
Confidence 889999999999999 9999999999999999999999 56667776654
No 63
>PRK07680 late competence protein ComER; Validated
Probab=99.65 E-value=6.5e-14 Score=139.41 Aligned_cols=195 Identities=17% Similarity=0.158 Sum_probs=133.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC----cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF----PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~----~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
|+|+|||+|.||..++..|.++|+ +|.+|+|++++.+.+.+... ++....+..+++.. +|+||+|+|+
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~-----g~~~~~~~~~~~~~---aDiVilav~p 72 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYP-----GIHVAKTIEEVISQ---SDLIFICVKP 72 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcC-----CeEEECCHHHHHHh---CCEEEEecCH
Confidence 479999999999999999999994 79999999998877765321 25567788888776 9999999987
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-cccCC--CCHHHHHHHH
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPG--GSFEAYNNIR 159 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i~~g--g~~~a~~~v~ 159 (503)
..+.++++++.+.+.++++||+++++. ....+...+..+.++++.. .+..+..|. .++.| .+++.++.++
T Consensus 73 -~~~~~vl~~l~~~l~~~~~iis~~ag~--~~~~L~~~~~~~~~r~~p~----~~~~~~~G~t~~~~g~~~~~~~~~~~~ 145 (273)
T PRK07680 73 -LDIYPLLQKLAPHLTDEHCLVSITSPI--SVEQLETLVPCQVARIIPS----ITNRALSGASLFTFGSRCSEEDQQKLE 145 (273)
T ss_pred -HHHHHHHHHHHhhcCCCCEEEEECCCC--CHHHHHHHcCCCEEEECCC----hHHHHhhccEEEeeCCCCCHHHHHHHH
Confidence 478999999999898899999999865 3445555444333444432 234456777 44555 4677889999
Q ss_pred HHHHHHhcccCCCCcEEEeCCc-chh-HHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010702 160 DILQKVAAQVDDGPCVTYIGEG-GSG-NFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDE 226 (503)
Q Consensus 160 ~ll~~ig~~~~~~~~v~~~G~~-G~g-~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~ 226 (503)
++|+.+| .++++.+. -.. ..+=-+.-++.+..+..+.++. .++.| ++.++..+++.+
T Consensus 146 ~ll~~~G-------~~~~i~e~~~~~~~~l~gs~pa~~~~~~~al~~~~--~~~~G-l~~~~a~~~~~~ 204 (273)
T PRK07680 146 RLFSNIS-------TPLVIEEDITRVSSDIVSCGPAFFSYLLQRFIDAA--VEETN-ISKEEATTLASE 204 (273)
T ss_pred HHHHcCC-------CEEEEChHhcchhhhhccchHHHHHHHHHHHHHHH--HHhcC-CCHHHHHHHHHH
Confidence 9999999 24445432 000 0000011123333334344432 24467 999998888754
No 64
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.64 E-value=9.9e-15 Score=147.75 Aligned_cols=169 Identities=17% Similarity=0.223 Sum_probs=127.9
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEE
Q 010702 1 MEASALSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (503)
Q Consensus 1 M~~~~~~~IgIIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil 78 (503)
|+..+.++|+|||+|.||..+|..|.+.|+ +|.+|||++++.+.+.+.+.. .....++++++++ +|+||+
T Consensus 1 ~~~~~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~-----~~~~~~~~~~~~~---aDvVii 72 (307)
T PRK07502 1 MSAPLFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLG-----DRVTTSAAEAVKG---ADLVIL 72 (307)
T ss_pred CCccCCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCC-----ceecCCHHHHhcC---CCEEEE
Confidence 677666799999999999999999999995 899999999988776654321 2345567777666 999999
Q ss_pred ecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecc-cCCCChh-hhhc-------CC-c---
Q 010702 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEE-GARH-------GP-S--- 145 (503)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsgg~~-~a~~-------G~-~--- 145 (503)
|+|.. ...+++.++.+.++++.+|+|.++......+.....+ ..+++|+++ |+.|++. +... |. .
T Consensus 73 avp~~-~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~-~~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~ 150 (307)
T PRK07502 73 CVPVG-ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHL-PEGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILT 150 (307)
T ss_pred CCCHH-HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhC-CCCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEe
Confidence 99985 6788888888889999999999888765554444433 346789986 8887642 2222 22 2
Q ss_pred ccCCCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhH
Q 010702 146 LMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGN 185 (503)
Q Consensus 146 i~~gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~ 185 (503)
.+.+++++.++.++++++.+| .+++++++.....
T Consensus 151 ~~~~~~~~~~~~~~~l~~~lG------~~~~~~~~~~hD~ 184 (307)
T PRK07502 151 PPEGTDPAAVARLTAFWRALG------ARVEEMDPEHHDL 184 (307)
T ss_pred CCCCCCHHHHHHHHHHHHHcC------CEEEEcCHHHHhH
Confidence 224678899999999999999 6788887644443
No 65
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.63 E-value=7.5e-15 Score=150.64 Aligned_cols=288 Identities=9% Similarity=0.005 Sum_probs=185.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-------CcEEEEeCChh-----HHHHHHHhhcccCCC-------CeeeeCCHHHH
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKG-------FPISVYNRTTS-----KVDETLDRAHREGQL-------PLTGHYTPRDF 66 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G-------~~V~v~dr~~~-----~~~~l~~~~~~~g~~-------~i~~~~s~~e~ 66 (503)
.+||+|||.|.||++||..|+++| ++|.+|.|+++ .++.+.+.+.+..++ ++...++++++
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea 90 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA 90 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence 368999999999999999999998 89999999986 356555443221111 46778888888
Q ss_pred HhccCCCcEEEEecCCChhHHHHHHHHHh--cCCCCCEEEecCCCChhhHH---HHHHHHHhc---CccEecccCCCChh
Q 010702 67 VLSIQRPRSVIILVKAGSPVDQTIAALSE--HMSPGDCIIDGGNEWYLNTE---RRIHEASQK---GLLYLGMGVSGGEE 138 (503)
Q Consensus 67 ~~~l~~~dvIil~vp~~~~v~~vl~~l~~--~l~~g~iIId~st~~~~~t~---~~~~~l~~~---gi~~i~~pvsgg~~ 138 (503)
+++ +|+|+++||+ ..++++++++.+ .+.++.+||.++.+....+. .+.+.+++. .+..+..|-. ..+
T Consensus 91 v~~---aDiIvlAVPs-q~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~~~~~LsGPs~-A~E 165 (365)
T PTZ00345 91 VED---ADLLIFVIPH-QFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGIPCCALSGANV-AND 165 (365)
T ss_pred Hhc---CCEEEEEcCh-HHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCCCeEEEECCCH-HHH
Confidence 887 9999999999 589999999998 78777789988777654332 223333321 2222333322 123
Q ss_pred hhhcCC--cccCCCCHHHHHHHHHHHHHHhccc---CC---------CCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHH
Q 010702 139 GARHGP--SLMPGGSFEAYNNIRDILQKVAAQV---DD---------GPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISE 204 (503)
Q Consensus 139 ~a~~G~--~i~~gg~~~a~~~v~~ll~~ig~~~---~~---------~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~E 204 (503)
-++.-+ ..+++-+.+..+.++.+|..=.-++ ++ -|+++.++. |....+++-.|.-.+.+...+.|
T Consensus 166 va~~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~-Gi~dGl~~G~N~kaalitrgl~E 244 (365)
T PTZ00345 166 VAREEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAA-GFCDGLGLGTNTKSAIIRIGLEE 244 (365)
T ss_pred HHcCCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHH-HHHHhcCCChhHHHHHHHHHHHH
Confidence 344445 4445568888888888886322111 00 033333332 44455667889999999999999
Q ss_pred HHHHHHHhC-CCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccC----C---CchhHHHHHhhc--CCcchHHHHH-
Q 010702 205 AYDVLKHVG-GLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEY----G---EGELVDKILDKT--GMKGTGKWTV- 273 (503)
Q Consensus 205 a~~l~~~~g-~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~----~---~~~~ld~i~~~~--~~kgtG~~~~- 273 (503)
+.++++..| +.+++++... .|.++ |+-++.. .++..| . ++..++.+.+.+ +|..+|..++
T Consensus 245 m~~l~~a~g~~~~~~T~~gl-----aG~GD--Li~Tc~s--SRN~~~G~~l~~g~~~~~~~~~~~~~~~~~~vEG~~t~~ 315 (365)
T PTZ00345 245 MKLFGKIFFPNVMDETFFES-----CGLAD--LITTCLG--GRNVRCAAEFAKRNGKKSWEEIEAELLNGQKLQGTVTLK 315 (365)
T ss_pred HHHHHHHhCCCCCccchhcc-----chHhH--hhhcccC--CCcHHHHHHHhccCCCCCHHHHHHHhhCCcEechHHHHH
Confidence 999999997 2477766543 12222 1111111 111111 1 113566676665 7888887777
Q ss_pred ---HHHHHcCC--CcchHHHHHHHHHHhcchHHHHHHHHHhc
Q 010702 274 ---QQAAELSV--AAPTIAASLDCRYLSGLKEEREKAAKVLK 310 (503)
Q Consensus 274 ---~~A~~~gv--p~p~~~~Av~~r~~s~~~~~r~~~~~~~~ 310 (503)
+.++++++ ++|++.+ + .|.+...++.......++.
T Consensus 316 ~v~~l~~~~~i~~~~Pi~~~-v-y~il~~~~~~~~~~~~l~~ 355 (365)
T PTZ00345 316 EVYEVLESHDLKKEFPLFTV-T-YKIAFEGADPSSLIDVLST 355 (365)
T ss_pred HHHHHHHHcCCCCCCCHHHH-H-HHHHhCCCCHHHHHHHHHc
Confidence 68889999 8999985 4 4566555666666666653
No 66
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.62 E-value=1.7e-13 Score=135.87 Aligned_cols=243 Identities=15% Similarity=0.134 Sum_probs=153.0
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCC---CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKG---FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G---~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
|||+|+|||+|.||..++..|.++| ++|.+|+|++++.+.+.+.. ++....+..+++.. +|+||+|+|
T Consensus 1 ~mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~------g~~~~~~~~~~~~~---advVil~v~ 71 (267)
T PRK11880 1 MMKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY------GVRAATDNQEAAQE---ADVVVLAVK 71 (267)
T ss_pred CCCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc------CCeecCChHHHHhc---CCEEEEEcC
Confidence 4679999999999999999999999 78999999999888776642 24456778887766 999999999
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecc-cCCCChhhhhcCC-cccCC--CCHHHHHH
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEEGARHGP-SLMPG--GSFEAYNN 157 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsgg~~~a~~G~-~i~~g--g~~~a~~~ 157 (503)
+. .++++++.+.+.+ +++||.++++.+.. .+...+. .+.+++.+ | ..+.....|. .++++ +++++++.
T Consensus 72 ~~-~~~~v~~~l~~~~--~~~vvs~~~gi~~~--~l~~~~~-~~~~iv~~~P--~~p~~~~~~~~~i~~~~~~~~~~~~~ 143 (267)
T PRK11880 72 PQ-VMEEVLSELKGQL--DKLVVSIAAGVTLA--RLERLLG-ADLPVVRAMP--NTPALVGAGMTALTANALVSAEDREL 143 (267)
T ss_pred HH-HHHHHHHHHHhhc--CCEEEEecCCCCHH--HHHHhcC-CCCcEEEecC--CchHHHcCceEEEecCCCCCHHHHHH
Confidence 85 7999999998876 57888888876433 3333332 24444442 3 2222333444 44555 48899999
Q ss_pred HHHHHHHHhcccCCCCcEEEeCCcchhHHHH-hHHHHHHHHHHHHHHHHHHH-HHHhCCCCHHHHHHHHHHhccCCcchh
Q 010702 158 IRDILQKVAAQVDDGPCVTYIGEGGSGNFVK-MVHNGIEYGDMQLISEAYDV-LKHVGGLSNAELAEIFDEWNKGELESF 235 (503)
Q Consensus 158 v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK-~v~N~i~~~~~~~~~Ea~~l-~~~~g~~~~~~i~~~~~~~~~g~~~s~ 235 (503)
++.+|+.+| . ++++.++..=+.+- +..++- +.+..+.|++.- +.+.| +++++..+++.++-.|.
T Consensus 144 v~~l~~~lG------~-~~~~~~e~~~d~~~a~~~~~p--a~~~~~~~~~~~~~~~~G-l~~~~a~~~~~~~~~g~---- 209 (267)
T PRK11880 144 VENLLSAFG------K-VVWVDDEKQMDAVTAVSGSGP--AYVFLFIEALADAGVKLG-LPREQARKLAAQTVLGA---- 209 (267)
T ss_pred HHHHHHhCC------e-EEEECChHhcchHHHHhcChH--HHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHH----
Confidence 999999999 4 55665322112211 111111 122223333333 45677 99999888875433332
Q ss_pred HHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHH
Q 010702 236 LVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIA 287 (503)
Q Consensus 236 l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~ 287 (503)
.+.+...+ ..+. +.+.+....-||..-.++...+.|++-.++.
T Consensus 210 -----~~~~~~~~-~~~~---~l~~~v~tpgG~t~~gl~~l~~~g~~~~~~~ 252 (267)
T PRK11880 210 -----AKLLLESG-EHPA---ELRDNVTSPGGTTIAALRVLEEKGLRAAVIE 252 (267)
T ss_pred -----HHHHHhcC-CCHH---HHHHhCCCCcHHHHHHHHHHHHCCHHHHHHH
Confidence 22332211 1222 2223333445666666677777888755544
No 67
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.62 E-value=1.5e-13 Score=135.60 Aligned_cols=234 Identities=11% Similarity=0.085 Sum_probs=150.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCc---EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFP---ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~---V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
|+|||||+|.||.+|++.|.+.|+. +.+|+|++++.+++.+... ++..+.+..+++++ +|+||+|+|+
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~-----~~~~~~~~~~~~~~---aDvVilav~p- 71 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFP-----KVRIAKDNQAVVDR---SDVVFLAVRP- 71 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcC-----CceEeCCHHHHHHh---CCEEEEEeCH-
Confidence 4799999999999999999999865 5799999999888776431 14567788888877 9999999996
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCCcccCCCCHHHHHHHHHHHH
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQ 163 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~~i~~gg~~~a~~~v~~ll~ 163 (503)
..+.+++.++ . +.++++||++..+. ....+...+......+..+|..... ...|.+.+++++ +.++++|+
T Consensus 72 ~~~~~vl~~l-~-~~~~~~vis~~ag~--~~~~l~~~~~~~~~~~r~~P~~~~a--~~~g~t~~~~~~----~~~~~l~~ 141 (258)
T PRK06476 72 QIAEEVLRAL-R-FRPGQTVISVIAAT--DRAALLEWIGHDVKLVRAIPLPFVA--ERKGVTAIYPPD----PFVAALFD 141 (258)
T ss_pred HHHHHHHHHh-c-cCCCCEEEEECCCC--CHHHHHHHhCCCCCEEEECCCChhh--hCCCCeEecCCH----HHHHHHHH
Confidence 5788888876 2 56789999877554 4445555554333445567763322 233555555553 57899999
Q ss_pred HHhcccCCCCcEEEeCCcchhHHHHhHHHH-----HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHh
Q 010702 164 KVAAQVDDGPCVTYIGEGGSGNFVKMVHNG-----IEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVE 238 (503)
Q Consensus 164 ~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~-----i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~ 238 (503)
.+| .++. ++++ |...+. .....+.++.++..++.+.| +++++..+++.+.-.|
T Consensus 142 ~lG------~~~~-~~~e------~~~d~~~a~~s~~a~~~~~~~~~~~~~~~~G-l~~~~a~~~~~~~~~G-------- 199 (258)
T PRK06476 142 ALG------TAVE-CDSE------EEYDLLAAASALMATYFGILETATGWLEEQG-LKRQKARAYLAPLFAS-------- 199 (258)
T ss_pred hcC------CcEE-ECCh------HhccceeehhccHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHH--------
Confidence 999 3333 4322 111111 22223346788888999999 9999998887433222
Q ss_pred hhhhh-ccccccCCCchhHHHHHhh-cCCcchHHHHHHHHHHcCCCcchHH
Q 010702 239 ITADI-FKVKDEYGEGELVDKILDK-TGMKGTGKWTVQQAAELSVAAPTIA 287 (503)
Q Consensus 239 ~~~~~-l~~~~~~~~~~~ld~i~~~-~~~kgtG~~~~~~A~~~gvp~p~~~ 287 (503)
+... +.. .+.++ +.+.|. ...-||..-.+..-.+.|+.-.++.
T Consensus 200 -~~~l~~~~-~~~~~----~~l~~~v~spgGtT~~gl~~le~~~~~~~~~~ 244 (258)
T PRK06476 200 -LAQDAVRS-TKTDF----SALSREFSTKGGLNEQVLNDFSRQGGYAALTD 244 (258)
T ss_pred -HHHHHHhc-CCCCH----HHHHHhCCCCCchHHHHHHHHHHCChHHHHHH
Confidence 2233 222 22222 333333 3445666555566666777644433
No 68
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=99.62 E-value=9.7e-15 Score=148.82 Aligned_cols=278 Identities=13% Similarity=0.047 Sum_probs=175.9
Q ss_pred cEEEEcccHHHHHHHHHHHhCC--------CcEEEEeC-----ChhHHHHHHHhhcccCCC-------CeeeeCCHHHHH
Q 010702 8 RIGLAGLAVMGQNLALNVAEKG--------FPISVYNR-----TTSKVDETLDRAHREGQL-------PLTGHYTPRDFV 67 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G--------~~V~v~dr-----~~~~~~~l~~~~~~~g~~-------~i~~~~s~~e~~ 67 (503)
||+|||.|.||.+||..|+++| ++|.+|.| +++..+.+.+...+..++ +++..+++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 6999999999999999999999 99999999 555555544332211001 356778888888
Q ss_pred hccCCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhh--HHH-HHHHHHhc-C--ccEecccCCCChhhhh
Q 010702 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLN--TER-RIHEASQK-G--LLYLGMGVSGGEEGAR 141 (503)
Q Consensus 68 ~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~--t~~-~~~~l~~~-g--i~~i~~pvsgg~~~a~ 141 (503)
++ +|+||++||+ ..+++++.++.+++.++.++|.++.+.... +.. +.+.+++. + +.++..|-.. .+-++
T Consensus 81 ~~---ADiIIlAVPs-~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~~~~~lsGP~~A-~Eva~ 155 (342)
T TIGR03376 81 KG---ADILVFVIPH-QFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGIPCGVLSGANLA-NEVAK 155 (342)
T ss_pred hc---CCEEEEECCh-HHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCCCeEEeeCcchH-HHHHc
Confidence 87 9999999999 589999999999998889999998876554 322 22333321 2 2223333221 23344
Q ss_pred cCC-cc-cCCCC----HHHHHHHHHHHHHHhccc---CC---------CCcEEEeCCcchhHHHHhHHHHHHHHHHHHHH
Q 010702 142 HGP-SL-MPGGS----FEAYNNIRDILQKVAAQV---DD---------GPCVTYIGEGGSGNFVKMVHNGIEYGDMQLIS 203 (503)
Q Consensus 142 ~G~-~i-~~gg~----~~a~~~v~~ll~~ig~~~---~~---------~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~ 203 (503)
.-| .+ +.+.+ .+..+.++.+|..=--++ ++ -|+++.++. |....+.+-.|.-.+.+.+.+.
T Consensus 156 ~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~-Gi~~Gl~~g~N~~aalitrgl~ 234 (342)
T TIGR03376 156 EKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAA-GFVDGLGWGDNAKAAVMRRGLL 234 (342)
T ss_pred CCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHH-HHHHhcCCCHHHHHHHHHHHHH
Confidence 444 33 34456 688888888885322110 00 033333332 4445556778999999999999
Q ss_pred HHHHHHHHhCCCCHH--HHHHHHHHhccCCcchhHHhhhhhhcccccc----CCC-chhHHHHHhh--cCCcchHHHHHH
Q 010702 204 EAYDVLKHVGGLSNA--ELAEIFDEWNKGELESFLVEITADIFKVKDE----YGE-GELVDKILDK--TGMKGTGKWTVQ 274 (503)
Q Consensus 204 Ea~~l~~~~g~~~~~--~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~----~~~-~~~ld~i~~~--~~~kgtG~~~~~ 274 (503)
|+..+++..| -+++ .+... .|.++ |+-+... .++.. +.. +..++.+.+. .+++.+|..++.
T Consensus 235 Em~~l~~~~g-~~~~~~T~~gl-----~G~GD--L~~Tc~s--sRN~~~G~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~ 304 (342)
T TIGR03376 235 EMIKFARMFF-PTGEVTFTFES-----CGVAD--LITTCLG--GRNFKVGRAFAKTGKSLEELEKELLNGQSLQGVATAK 304 (342)
T ss_pred HHHHHHHHhC-CCCCCCccccc-----chhhh--hhheeec--CccHHHHHHHHhcCCCHHHHHHhhcCCcEEeeHHHHH
Confidence 9999999998 5555 44332 12222 1111111 00011 122 3566777777 678888877764
Q ss_pred ----HHHHcCCC--cchHHHHHHHHHHhcchHHHH
Q 010702 275 ----QAAELSVA--APTIAASLDCRYLSGLKEERE 303 (503)
Q Consensus 275 ----~A~~~gvp--~p~~~~Av~~r~~s~~~~~r~ 303 (503)
.+.++++. +|++.+ ++ +.+...++.+.
T Consensus 305 ~~~~l~~~~~i~~~~Pi~~~-vy-~il~~~~~~~~ 337 (342)
T TIGR03376 305 EVHELLKNKNKDDEFPLFEA-VY-QILYEGLPPKK 337 (342)
T ss_pred HHHHHHHHcCCCcCCCHHHH-HH-HHHhCCCCHHH
Confidence 57889999 999985 44 44444344433
No 69
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.62 E-value=5.2e-14 Score=142.15 Aligned_cols=255 Identities=18% Similarity=0.202 Sum_probs=163.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhccc----CC--CCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE----GQ--LPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~----g~--~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
|||+|||+|.||..+|..|+++|++|++|+| +++.+.+.+.+... +. ......++.++.... +|+||+|+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~vilav 76 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGP---FDLVILAV 76 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCC---CCEEEEEe
Confidence 5899999999999999999999999999999 77777776543210 00 001123445554444 99999999
Q ss_pred CCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc----CccEecccCCCChhhhhcCC-cccCCC----C
Q 010702 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGEEGARHGP-SLMPGG----S 151 (503)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pvsgg~~~a~~G~-~i~~gg----~ 151 (503)
|.. +++++++.+.+.+.++++||...|+.. ..+.+.+.+.+. ++.++++...++..-...+. .+..|. .
T Consensus 77 k~~-~~~~~~~~l~~~~~~~~~ii~~~nG~~-~~~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~ 154 (305)
T PRK12921 77 KAY-QLDAAIPDLKPLVGEDTVIIPLQNGIG-QLEQLEPYFGRERVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQR 154 (305)
T ss_pred ccc-CHHHHHHHHHhhcCCCCEEEEeeCCCC-hHHHHHHhCCcccEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCc
Confidence 985 789999999998888899988888752 233444444332 34455554433211111233 344432 3
Q ss_pred HHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHH---------------------HHHHHHHHHHHHHHH
Q 010702 152 FEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIE---------------------YGDMQLISEAYDVLK 210 (503)
Q Consensus 152 ~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~---------------------~~~~~~~~Ea~~l~~ 210 (503)
.+..+.+..+|...+ ..+....+.-...+.|++.|... .....++.|+..+++
T Consensus 155 ~~~~~~l~~~l~~~g------~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~~ 228 (305)
T PRK12921 155 SERTRAVRDALAGAR------LEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAVAR 228 (305)
T ss_pred CHHHHHHHHHHHhCC------CCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 455566777777766 34445455666778888877543 335567899999999
Q ss_pred HhCCCC--HHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHH
Q 010702 211 HVGGLS--NAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAA 288 (503)
Q Consensus 211 ~~g~~~--~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~ 288 (503)
+.| ++ .+.+.+.+....... ......+..+..+.+. ..+|.+.. ..++.|+++|+|+|....
T Consensus 229 a~G-~~~~~~~~~~~~~~~~~~~-~~~~sSm~~D~~~gr~-----tEid~i~G---------~vv~~a~~~gv~~P~~~~ 292 (305)
T PRK12921 229 AEG-APLRDDVVEEIVKIFAGAP-GDMKTSMLRDMEKGRP-----LEIDHLQG---------VLLRRARAHGIPTPILDT 292 (305)
T ss_pred HcC-CCCChhHHHHHHHHHhccC-CCCCcHHHHHHHcCCc-----ccHHHHHH---------HHHHHHHHhCCCCcHHHH
Confidence 988 76 334444433221111 1122334456554322 47777775 468999999999999885
Q ss_pred H
Q 010702 289 S 289 (503)
Q Consensus 289 A 289 (503)
.
T Consensus 293 l 293 (305)
T PRK12921 293 V 293 (305)
T ss_pred H
Confidence 4
No 70
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.60 E-value=1.2e-13 Score=136.08 Aligned_cols=192 Identities=10% Similarity=0.113 Sum_probs=134.8
Q ss_pred CcEEEEcccHH--------------------HHHHHHHHHhCCCcEEEEeCChhHHH-----HHHHhhcccCCCCeeeeC
Q 010702 7 SRIGLAGLAVM--------------------GQNLALNVAEKGFPISVYNRTTSKVD-----ETLDRAHREGQLPLTGHY 61 (503)
Q Consensus 7 ~~IgIIGlG~m--------------------G~~lA~~L~~~G~~V~v~dr~~~~~~-----~l~~~~~~~g~~~i~~~~ 61 (503)
|||.|.|+|+- |.+||++|+++||+|++|||++++.+ .+.+.| +..++
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaG-------A~~Aa 73 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAG-------VKVVS 73 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCC-------CeecC
Confidence 57889998864 78999999999999999999987653 355443 56788
Q ss_pred CHHHHHhccCCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHH-H--Hhc--Ccc-EecccCCC
Q 010702 62 TPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE-A--SQK--GLL-YLGMGVSG 135 (503)
Q Consensus 62 s~~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~-l--~~~--gi~-~i~~pvsg 135 (503)
++.+++++ +|+||+|+|++.+++++++++.+.+.+|++|||+||+.|....+..+. + ..+ |+. |..+.|-|
T Consensus 74 S~aEAAa~---ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~ 150 (341)
T TIGR01724 74 DDKEAAKH---GEIHVLFTPFGKGTFSIARTIIEHVPENAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPG 150 (341)
T ss_pred CHHHHHhC---CCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCC
Confidence 99999988 999999999999999999999999999999999999999988876654 2 223 322 22223333
Q ss_pred ChhhhhcCCcccCC--------CCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHH
Q 010702 136 GEEGARHGPSLMPG--------GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYD 207 (503)
Q Consensus 136 g~~~a~~G~~i~~g--------g~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~ 207 (503)
.+. ++-.++.| .+++..+++.++.+..+ +..+.+...=.+...-|+ -.+.+...+.+.+-+.
T Consensus 151 ~~~---~~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~------~~~~~~pa~l~~~v~Dm~-s~vta~~~~gil~y~~ 220 (341)
T TIGR01724 151 TPQ---HGHYVIGGKPTAGKEMATEEQISKCVELAKSTG------KKAYVVPADVTSAVADMG-SLVTAVALAGVLDYYY 220 (341)
T ss_pred CCC---CceeeeccccccccccCCHHHHHHHHHHHHHhC------CCeeecchhhcchhhhHH-HHHHHHHHHHHHHHHH
Confidence 221 11122222 27888999999999998 666666443333333343 2333445566667777
Q ss_pred HHHHhCCCCHH
Q 010702 208 VLKHVGGLSNA 218 (503)
Q Consensus 208 l~~~~g~~~~~ 218 (503)
.+.+..|.+.+
T Consensus 221 ~~t~i~~ap~~ 231 (341)
T TIGR01724 221 VGTQIINAPKE 231 (341)
T ss_pred HHHHHhcCcHH
Confidence 77665545443
No 71
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.59 E-value=2.3e-13 Score=138.94 Aligned_cols=276 Identities=12% Similarity=0.102 Sum_probs=156.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhccc----C-C--CCeeeeCCHHHHH-hccCCCcEEEE
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE----G-Q--LPLTGHYTPRDFV-LSIQRPRSVII 78 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~----g-~--~~i~~~~s~~e~~-~~l~~~dvIil 78 (503)
|||+|||+|.||..+|..|+++|++|++|+|+++.++.+.+.+... + . .++....++.+.+ .. +|+||+
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~Dliii 77 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDN---ATCIIL 77 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCC---CCEEEE
Confidence 4799999999999999999999999999999998888777642110 0 0 0244556676665 34 899999
Q ss_pred ecCCChhHHHHHHHHHh-cCCCCCEEEecCCCChhh-----HHHHHHHHHhcCccEecccCCCChhhhhcCC-cc-cCCC
Q 010702 79 LVKAGSPVDQTIAALSE-HMSPGDCIIDGGNEWYLN-----TERRIHEASQKGLLYLGMGVSGGEEGARHGP-SL-MPGG 150 (503)
Q Consensus 79 ~vp~~~~v~~vl~~l~~-~l~~g~iIId~st~~~~~-----t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i-~~gg 150 (503)
+||+ ..++++++++.+ .+.++..|+.++++.... .+.+.+.+....+..+..|-.. .+.+...+ .+ +.|.
T Consensus 78 avks-~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~~a-~~~~~~~~~~~~~~~~ 155 (326)
T PRK14620 78 AVPT-QQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPSFA-KEIAEKLPCSIVLAGQ 155 (326)
T ss_pred EeCH-HHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCcHH-HHHHcCCCcEEEEecC
Confidence 9999 489999999998 888777777777776332 2222222222222222222110 12333334 33 3444
Q ss_pred CHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHH-----------------HHHHHHHHHHHHHHHHHHHHhC
Q 010702 151 SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVH-----------------NGIEYGDMQLISEAYDVLKHVG 213 (503)
Q Consensus 151 ~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~-----------------N~i~~~~~~~~~Ea~~l~~~~g 213 (503)
+.+..+++..+|..-+ ..+....+.-.-.+.|.+- |.....+.+++.|+..+++..|
T Consensus 156 ~~~~~~~l~~~l~~~~------~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a~G 229 (326)
T PRK14620 156 NETLGSSLISKLSNEN------LKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAKN 229 (326)
T ss_pred CHHHHHHHHHHHCCCC------eEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHhC
Confidence 5554455555554433 2222222222223334333 3444556788999999999988
Q ss_pred CC--CHHHHH------HHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhcCCcchH----HHHHHHHHHcCC
Q 010702 214 GL--SNAELA------EIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTG----KWTVQQAAELSV 281 (503)
Q Consensus 214 ~~--~~~~i~------~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG----~~~~~~A~~~gv 281 (503)
. +++++. +.+..-.....+++-+... + ..+..++.+.+...+.-+| +.+.+.++++|+
T Consensus 230 -~~~~~~~~~gl~g~gdl~~t~~~~~~rN~~~G~~---l------~~g~~~~d~~~~~~~~vegi~~~~~v~~~a~~~~i 299 (326)
T PRK14620 230 -GSIDLNTLIGPSCLGDLILTCTTLHSRNMSFGFK---I------GNGFNINQILSEGKSVIEGFSTVKPLISLAKKLNI 299 (326)
T ss_pred -CCCCcchhhccchhhhhhheecCCCCCcHHHHHH---H------HCCCCHHHHHHhCCCEeecHHHHHHHHHHHHHhCC
Confidence 5 777774 3331111011222221111 0 0112233333222211122 367789999999
Q ss_pred CcchHHHHHHHHHHhcchHHHHHH
Q 010702 282 AAPTIAASLDCRYLSGLKEEREKA 305 (503)
Q Consensus 282 p~p~~~~Av~~r~~s~~~~~r~~~ 305 (503)
++|++.. +. +.+...++.....
T Consensus 300 ~~P~~~~-l~-~~~~~~~~~~~~~ 321 (326)
T PRK14620 300 ELPICES-IY-NLLYENISLEKTI 321 (326)
T ss_pred CCCHHHH-HH-HHHhCCCCHHHHH
Confidence 9999885 33 4444333344333
No 72
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.58 E-value=9e-14 Score=140.23 Aligned_cols=255 Identities=16% Similarity=0.200 Sum_probs=151.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcc--cCCC--CeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR--EGQL--PLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~--~g~~--~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
|+|+|||+|.||+.+|..|+++|++|++++|+++..+.+.+.+.. .+.. .+....+++++ . .+|+||+++|.
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~---~~d~vila~k~ 76 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-G---PQDLVILAVKA 76 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-C---CCCEEEEeccc
Confidence 589999999999999999999999999999998888877665421 0100 01223444443 3 49999999998
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc----CccEecccCCCChhhhhcCC-cccCCC---CHHH
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGEEGARHGP-SLMPGG---SFEA 154 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pvsgg~~~a~~G~-~i~~gg---~~~a 154 (503)
. ++++++..+.+.+.++++||...|+.. ..+.+.+.+... |+.++++-..+.......+. .+..|. +.+.
T Consensus 77 ~-~~~~~~~~l~~~l~~~~~iv~~~nG~~-~~~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~~ig~~~~~~~~ 154 (304)
T PRK06522 77 Y-QLPAALPSLAPLLGPDTPVLFLQNGVG-HLEELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRLKIGEPDGESAA 154 (304)
T ss_pred c-cHHHHHHHHhhhcCCCCEEEEecCCCC-cHHHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCEEEeCCCCCcHH
Confidence 5 789999999999888888998888753 223333433322 11222221211111111122 222332 2233
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHH---------------------HHHHHHHHHHHHHHHHHHHhC
Q 010702 155 YNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHN---------------------GIEYGDMQLISEAYDVLKHVG 213 (503)
Q Consensus 155 ~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N---------------------~i~~~~~~~~~Ea~~l~~~~g 213 (503)
.+.+.++|...+ ..+....+.-...+.|++.| ........++.|+..++++.|
T Consensus 155 ~~~l~~~l~~~~------~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G 228 (304)
T PRK06522 155 AEALADLLNAAG------LDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAEG 228 (304)
T ss_pred HHHHHHHHHhcC------CCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHcC
Confidence 566777777666 23322223344444454444 233445677899999999987
Q ss_pred CCC--HHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHH
Q 010702 214 GLS--NAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (503)
Q Consensus 214 ~~~--~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~A 289 (503)
++ .+.+.+.+......... ...++..++...+. ..+|.+.. +.++.|+++|+|+|.....
T Consensus 229 -~~~~~~~~~~~~~~~~~~~~~-~~sSm~~D~~~gr~-----tEid~i~G---------~~v~~a~~~gv~~P~~~~l 290 (304)
T PRK06522 229 -VHLSVEEVREYVRQVIQKTAA-NTSSMLQDLEAGRP-----TEIDAIVG---------YVLRRGRKHGIPTPLNDAL 290 (304)
T ss_pred -CCCChHHHHHHHHHHhhccCC-CCchHHHHHHcCCC-----cccchhcc---------HHHHHHHHcCCCCcHHHHH
Confidence 65 34444443322211111 12334445544322 35666554 5789999999999987643
No 73
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.58 E-value=5.2e-14 Score=142.44 Aligned_cols=178 Identities=14% Similarity=0.133 Sum_probs=133.4
Q ss_pred HHHHHHHHHHhCCCcEEEEeCChhH-------HHHHHH-------hhcccCCC----------CeeeeCC--HHHHHhcc
Q 010702 17 MGQNLALNVAEKGFPISVYNRTTSK-------VDETLD-------RAHREGQL----------PLTGHYT--PRDFVLSI 70 (503)
Q Consensus 17 mG~~lA~~L~~~G~~V~v~dr~~~~-------~~~l~~-------~~~~~g~~----------~i~~~~s--~~e~~~~l 70 (503)
||.+||..++.+|++|.+||++++. ++...+ .....|.+ +++...+ +.+++++
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~- 79 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALAD- 79 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhcc-
Confidence 8999999999999999999999842 111110 00000100 4555544 5566666
Q ss_pred CCCcEEEEecCCChhHHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHH----hcCccEeccc-------CCCChh
Q 010702 71 QRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEAS----QKGLLYLGMG-------VSGGEE 138 (503)
Q Consensus 71 ~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~----~~gi~~i~~p-------vsgg~~ 138 (503)
+|+||.|||++.+++..+ .++.+.++++.|| +||++.....++++.+. ..|+||+++| |++|+
T Consensus 80 --aD~ViEav~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~- 154 (314)
T PRK08269 80 --ADLVFEAVPEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSD- 154 (314)
T ss_pred --CCEEEECCcCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCC-
Confidence 999999999999998877 6787888888888 45555556667777663 3489999988 66554
Q ss_pred hhhcCCcccCCCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 010702 139 GARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNA 218 (503)
Q Consensus 139 ~a~~G~~i~~gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~ 218 (503)
++++++++++.++++.+| +.++++++.+ |+. -|.+ ...+++|++.++++.+ ++++
T Consensus 155 ----------~t~~e~~~~~~~ll~~lG------k~~v~v~d~~-Gfi----~nri---~~~~l~EAl~l~e~g~-~~~e 209 (314)
T PRK08269 155 ----------ATDPAVVDRLAALLERIG------KVPVVCGPSP-GYI----VPRI---QALAMNEAARMVEEGV-ASAE 209 (314)
T ss_pred ----------CCCHHHHHHHHHHHHHcC------CcEEEecCCC-Ccc----hHHH---HHHHHHHHHHHHHhCC-CCHH
Confidence 579999999999999999 8899998754 542 3443 5667799999999988 9999
Q ss_pred HHHHHHH
Q 010702 219 ELAEIFD 225 (503)
Q Consensus 219 ~i~~~~~ 225 (503)
++++++.
T Consensus 210 ~iD~a~~ 216 (314)
T PRK08269 210 DIDKAIR 216 (314)
T ss_pred HHHHHHH
Confidence 9999873
No 74
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.58 E-value=7.5e-13 Score=131.46 Aligned_cols=194 Identities=13% Similarity=0.111 Sum_probs=130.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC----cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF----PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~----~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
.++|||||+|.||.+|+.+|.++|+ +|++|||++++.+.+.+.. ++..+.+..+++.+ +|+||+|||
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~------g~~~~~~~~e~~~~---aDiIiLavk 72 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKY------GITITTNNNEVANS---ADILILSIK 72 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhc------CcEEeCCcHHHHhh---CCEEEEEeC
Confidence 4689999999999999999999885 6999999999988876532 24567788888877 999999999
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEe-cccCCCChhhhhcCC-cccCC--CCHHHHHH
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGEEGARHGP-SLMPG--GSFEAYNN 157 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i-~~pvsgg~~~a~~G~-~i~~g--g~~~a~~~ 157 (503)
+ ..+.++++++.+.+.++.+||+.-.+.. ...+.+.+... .+.+ -+|-. +.....|. .+.++ .+++..+.
T Consensus 73 P-~~~~~vl~~l~~~~~~~~lvISi~AGi~--i~~l~~~l~~~-~~vvR~MPN~--~~~vg~g~t~~~~~~~~~~~~~~~ 146 (272)
T PRK12491 73 P-DLYSSVINQIKDQIKNDVIVVTIAAGKS--IKSTENEFDRK-LKVIRVMPNT--PVLVGEGMSALCFNEMVTEKDIKE 146 (272)
T ss_pred h-HHHHHHHHHHHHhhcCCcEEEEeCCCCc--HHHHHHhcCCC-CcEEEECCCh--HHHHcCceEEEEeCCCCCHHHHHH
Confidence 7 6899999999998888899999877763 33444444321 1222 23422 22334555 33333 35667788
Q ss_pred HHHHHHHHhcccCCCCcEEEeCCc--chhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010702 158 IRDILQKVAAQVDDGPCVTYIGEG--GSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFD 225 (503)
Q Consensus 158 v~~ll~~ig~~~~~~~~v~~~G~~--G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~ 225 (503)
++.+|+.+| . ++.+.+. -....+-=+--++.+.++..+.++ +.+.| ++.++..++..
T Consensus 147 v~~lf~~~G------~-~~~~~E~~~d~~talsgsgPAf~~~~~eal~~a---~v~~G-l~~~~A~~l~~ 205 (272)
T PRK12491 147 VLNIFNIFG------Q-TEVVNEKLMDVVTSISGSSPAYVYMFIEAMADA---AVLGG-MPRKQAYKFAA 205 (272)
T ss_pred HHHHHHcCC------C-EEEEcHHHhhhHHHhccCcHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 999999999 3 3455431 111111011112333444444544 45667 99999888864
No 75
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.55 E-value=2.2e-13 Score=140.74 Aligned_cols=170 Identities=14% Similarity=0.158 Sum_probs=124.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
.+|+|||+|.||.+||+.|.++|++|.+|+++++..+.....+... .-....++++++++ +|+||+|+|.. .+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~~~---aDlVilavP~~-~~ 73 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGV---IDELAADLQRAAAE---ADLIVLAVPVD-AT 73 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCC---CcccccCHHHHhcC---CCEEEEeCCHH-HH
Confidence 3799999999999999999999999999999887654433322110 01234566777766 99999999995 78
Q ss_pred HHHHHHHHh-cCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec-ccCCCChh-hh-------hcCC-cccC---CCCH
Q 010702 87 DQTIAALSE-HMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEE-GA-------RHGP-SLMP---GGSF 152 (503)
Q Consensus 87 ~~vl~~l~~-~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsgg~~-~a-------~~G~-~i~~---gg~~ 152 (503)
.+++.++.+ .+.++.+|+|.+++.........+. ...+.+|++ .|+.|++. |. ..|. .+++ ++++
T Consensus 74 ~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~-~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~ 152 (359)
T PRK06545 74 AALLAELADLELKPGVIVTDVGSVKGAILAEAEAL-LGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDP 152 (359)
T ss_pred HHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHh-cCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCH
Confidence 899999987 4888999999999887666555443 334678998 68888642 22 2343 3333 2588
Q ss_pred HHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhH
Q 010702 153 EAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMV 190 (503)
Q Consensus 153 ~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v 190 (503)
+.++.++++++.+| .+++++.+......+-++
T Consensus 153 ~~~~~v~~l~~~lG------a~~v~~~~~~HD~~~A~v 184 (359)
T PRK06545 153 DAVAELKDLLSGTG------AKFVVLDAEEHDRAVALV 184 (359)
T ss_pred HHHHHHHHHHHHcC------CEEEECCHHHHhHHHhHh
Confidence 99999999999999 678888776555555444
No 76
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=99.52 E-value=1e-12 Score=133.37 Aligned_cols=254 Identities=13% Similarity=0.135 Sum_probs=155.2
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcc----cCCC---CeeeeCCHHHHHhccCCCcEEE
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR----EGQL---PLTGHYTPRDFVLSIQRPRSVI 77 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~----~g~~---~i~~~~s~~e~~~~l~~~dvIi 77 (503)
.+|+|+|||+|.||+.+|..|+++|++|+++.|++. +.+.+.+.. .+.. .+....++++ . ..+|+||
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~---~~~D~vi 77 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAED-M---PPCDWVL 77 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhh-c---CCCCEEE
Confidence 346999999999999999999999999999999863 344443321 0000 0112223322 2 3489999
Q ss_pred EecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc----CccEecccCCCCh-hh-hhcCC-cc--cC
Q 010702 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGE-EG-ARHGP-SL--MP 148 (503)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pvsgg~-~~-a~~G~-~i--~~ 148 (503)
+|||.. ++.+++..+.+.+.++.+|+...|+.. ..+.+.+.+.+. |+.++++...+.. .. ...|. .+ ..
T Consensus 78 lavK~~-~~~~~~~~l~~~~~~~~~iv~lqNG~~-~~e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~ 155 (313)
T PRK06249 78 VGLKTT-ANALLAPLIPQVAAPDAKVLLLQNGLG-VEEQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYHS 155 (313)
T ss_pred EEecCC-ChHhHHHHHhhhcCCCCEEEEecCCCC-cHHHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEecCC
Confidence 999986 678888999998888889998888753 333444444332 3344444333211 11 11222 11 12
Q ss_pred CCC-----HHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHH---------------------HHHHHHHHH
Q 010702 149 GGS-----FEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNG---------------------IEYGDMQLI 202 (503)
Q Consensus 149 gg~-----~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~---------------------i~~~~~~~~ 202 (503)
+.+ .+..+.+..+|+..+ ..+....+.-..-+.|++.|. .......++
T Consensus 156 ~~~~~~~~~~~~~~l~~~l~~ag------~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~~ 229 (313)
T PRK06249 156 GPAADDGITARVEEGAALFRAAG------IDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRALM 229 (313)
T ss_pred CCcccchHHHHHHHHHHHHHhCC------CCceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHHH
Confidence 223 456667778888777 334344444445555555442 234456778
Q ss_pred HHHHHHHHHhCCCC--HHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcC
Q 010702 203 SEAYDVLKHVGGLS--NAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELS 280 (503)
Q Consensus 203 ~Ea~~l~~~~g~~~--~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~g 280 (503)
.|++.++++.| ++ .+.+.+++.. ...... ...++..++.+.+. ..+|.+.. +.++.|+++|
T Consensus 230 ~E~~~va~a~G-i~~~~~~~~~~~~~-~~~~~~-~~sSM~qD~~~gr~-----tEid~i~G---------~vv~~a~~~G 292 (313)
T PRK06249 230 AEVIQGAAACG-HTLPEGYADHMLAV-TERMPD-YRPSMYHDFEEGRP-----LELEAIYA---------NPLAAARAAG 292 (313)
T ss_pred HHHHHHHHhcC-CCCChhHHHHHHHH-hhcCCC-CCChHHHHHHCCCc-----ccHHHHhh---------HHHHHHHHhC
Confidence 99999999988 76 2333333322 222111 22344456654332 47888775 5799999999
Q ss_pred CCcchHHHH
Q 010702 281 VAAPTIAAS 289 (503)
Q Consensus 281 vp~p~~~~A 289 (503)
+|+|.....
T Consensus 293 i~~P~~~~l 301 (313)
T PRK06249 293 CAMPRVEML 301 (313)
T ss_pred CCCcHHHHH
Confidence 999987754
No 77
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.51 E-value=4.1e-13 Score=133.66 Aligned_cols=192 Identities=17% Similarity=0.240 Sum_probs=130.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh-------cccCCC----------CeeeeCCHHHHHh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA-------HREGQL----------PLTGHYTPRDFVL 68 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~~----------~i~~~~s~~e~~~ 68 (503)
.++|||||+|.||.++|..++..||+|.++|++++.+++..... ...|.+ +++...++.+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~--- 79 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAA--- 79 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhH---
Confidence 46899999999999999999998899999999987654433211 111101 3444444442
Q ss_pred ccCCCcEEEEecCCChhHHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHH--hc--CccEecccC-CCChhhhhc
Q 010702 69 SIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEAS--QK--GLLYLGMGV-SGGEEGARH 142 (503)
Q Consensus 69 ~l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~--~~--gi~~i~~pv-sgg~~~a~~ 142 (503)
+++||+||.+|+++..++.-+ .++-..++++.|+-..+++.+.+ ++++.+. ++ |.||++.|. +.-.+
T Consensus 80 -l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it--~ia~~~~rper~iG~HFfNP~~~m~LVE---- 152 (307)
T COG1250 80 -LKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSIT--ELAEALKRPERFIGLHFFNPVPLMPLVE---- 152 (307)
T ss_pred -hccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHH--HHHHHhCCchhEEEEeccCCCCcceeEE----
Confidence 334999999999998887655 66767776766666555444333 3444442 22 778887642 22111
Q ss_pred CCcccCC--CCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 010702 143 GPSLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAEL 220 (503)
Q Consensus 143 G~~i~~g--g~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i 220 (503)
++.| .++++++++.++.+.++ +.+. +...-.|+++ |.+ ....+.|++.++.+.. .+++++
T Consensus 153 ---vI~g~~T~~e~~~~~~~~~~~ig------K~~v-v~~D~pGFi~----NRi---l~~~~~eA~~l~~eGv-a~~e~I 214 (307)
T COG1250 153 ---VIRGEKTSDETVERVVEFAKKIG------KTPV-VVKDVPGFIV----NRL---LAALLNEAIRLLEEGV-ATPEEI 214 (307)
T ss_pred ---EecCCCCCHHHHHHHHHHHHHcC------CCCE-eecCCCceeh----HhH---HHHHHHHHHHHHHhCC-CCHHHH
Confidence 2233 37899999999999999 5553 3334555554 554 4556699999999987 999999
Q ss_pred HHHHH
Q 010702 221 AEIFD 225 (503)
Q Consensus 221 ~~~~~ 225 (503)
+.++.
T Consensus 215 D~~~~ 219 (307)
T COG1250 215 DAAMR 219 (307)
T ss_pred HHHHH
Confidence 99974
No 78
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=99.48 E-value=3.2e-13 Score=126.31 Aligned_cols=149 Identities=21% Similarity=0.252 Sum_probs=98.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh---------------cccCCCCeeeeCCHHHHHhccC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA---------------HREGQLPLTGHYTPRDFVLSIQ 71 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~---------------~~~g~~~i~~~~s~~e~~~~l~ 71 (503)
|||+|||+|.+|..+|..|+++||+|++||.++++++.+.+.. ...+ ++..+.+.++.+.+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~--~l~~t~~~~~ai~~-- 76 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAG--RLRATTDIEEAIKD-- 76 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTT--SEEEESEHHHHHHH--
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccc--cchhhhhhhhhhhc--
Confidence 6899999999999999999999999999999999988766321 1111 57888899988887
Q ss_pred CCcEEEEecCCC---------hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHH-HHhcC-----ccEecccCCC-
Q 010702 72 RPRSVIILVKAG---------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE-ASQKG-----LLYLGMGVSG- 135 (503)
Q Consensus 72 ~~dvIil~vp~~---------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~-l~~~g-----i~~i~~pvsg- 135 (503)
+|++|+|||++ ..++++++.+.+.++++++||--||..|.+++++... +++.+ ++..-+|-.=
T Consensus 77 -adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~ 155 (185)
T PF03721_consen 77 -ADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLR 155 (185)
T ss_dssp --SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------
T ss_pred -cceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccC
Confidence 99999999854 3478888999999999999999999999999966554 44332 3444455221
Q ss_pred -C-h-hhhhcCCcccCCCCHHHHH-HHHH
Q 010702 136 -G-E-EGARHGPSLMPGGSFEAYN-NIRD 160 (503)
Q Consensus 136 -g-~-~~a~~G~~i~~gg~~~a~~-~v~~ 160 (503)
| . ...++-+.++.|.+++..+ ++++
T Consensus 156 ~G~a~~d~~~~~rvV~G~~~~~~~~~~~~ 184 (185)
T PF03721_consen 156 EGRAIEDFRNPPRVVGGCDDESAEERLKE 184 (185)
T ss_dssp TTSHHHHHHSSSEEEEEESSHHHHHHHHH
T ss_pred CCCcchhccCCCEEEEeCCcHHHHHHHhc
Confidence 1 1 1122223556665544333 5544
No 79
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.46 E-value=2.3e-12 Score=127.64 Aligned_cols=161 Identities=18% Similarity=0.243 Sum_probs=116.8
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH--HHHHHHhhcccCCCCeeeeCCH-HHHHhccCCCcEEEEecC
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK--VDETLDRAHREGQLPLTGHYTP-RDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~--~~~l~~~~~~~g~~~i~~~~s~-~e~~~~l~~~dvIil~vp 81 (503)
++++|+|+|+|.||+++|+.|.++|+.|.+++++... .+...+.+.. -....+. .+.+. .+|+||++||
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~-----d~~~~~~~~~~~~---~aD~VivavP 73 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVI-----DELTVAGLAEAAA---EADLVIVAVP 73 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcc-----cccccchhhhhcc---cCCEEEEecc
Confidence 3578999999999999999999999998777666544 3332222211 0111222 33333 3899999999
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecc-cCCCCh--hhhhcCC--cccCCC--CHHH
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGE--EGARHGP--SLMPGG--SFEA 154 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsgg~--~~a~~G~--~i~~gg--~~~a 154 (503)
-. .+.++++++.+.+++|.+|+|.+++.-...+.+.+...+.. +|++. |+.|.+ ..-..+. .++++. +.+.
T Consensus 74 i~-~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~ 151 (279)
T COG0287 74 IE-ATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEW 151 (279)
T ss_pred HH-HHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeEecCCCCCCcccccccCCCEEEEcCCCCCCHHH
Confidence 95 89999999999999999999999998877776666655544 89885 888873 3334455 334443 5678
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEeCCc
Q 010702 155 YNNIRDILQKVAAQVDDGPCVTYIGEG 181 (503)
Q Consensus 155 ~~~v~~ll~~ig~~~~~~~~v~~~G~~ 181 (503)
++++..+++.+| ..++++.+.
T Consensus 152 ~~~~~~~~~~~g------a~~v~~~~e 172 (279)
T COG0287 152 VEEVKRLWEALG------ARLVEMDAE 172 (279)
T ss_pred HHHHHHHHHHcC------CEEEEcChH
Confidence 999999999999 467777664
No 80
>PLN02256 arogenate dehydrogenase
Probab=99.45 E-value=9.3e-12 Score=125.35 Aligned_cols=159 Identities=16% Similarity=0.191 Sum_probs=116.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+++|+|||+|.||..+|..|.+.|++|.+||+++.. +...+. ++....+.++++. ..+|+||+|+|.. .
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~~-------gv~~~~~~~e~~~--~~aDvVilavp~~-~ 104 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAAEL-------GVSFFRDPDDFCE--EHPDVVLLCTSIL-S 104 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHHHc-------CCeeeCCHHHHhh--CCCCEEEEecCHH-H
Confidence 468999999999999999999999999999999642 222222 2445677887753 1289999999985 7
Q ss_pred HHHHHHHH-HhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec-ccCCCChhh--hhcCC-cccC-------CCCHH
Q 010702 86 VDQTIAAL-SEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEG--ARHGP-SLMP-------GGSFE 153 (503)
Q Consensus 86 v~~vl~~l-~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsgg~~~--a~~G~-~i~~-------gg~~~ 153 (503)
+.+++.++ .+.+.++.+|+|.+++.-...+.+.+.+.. +..|+. .|+.|.+.+ ...+. .+.. +.+++
T Consensus 105 ~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~-~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~ 183 (304)
T PLN02256 105 TEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE-EFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREA 183 (304)
T ss_pred HHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCC-CCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHH
Confidence 89999888 677889999999999775555555544433 567887 488776543 22333 2221 33778
Q ss_pred HHHHHHHHHHHHhcccCCCCcEEEeCCcc
Q 010702 154 AYNNIRDILQKVAAQVDDGPCVTYIGEGG 182 (503)
Q Consensus 154 a~~~v~~ll~~ig~~~~~~~~v~~~G~~G 182 (503)
+++.++++++.+| .+++.+.+..
T Consensus 184 ~~~~l~~l~~~lG------a~v~~~~~ee 206 (304)
T PLN02256 184 RCERFLDIFEEEG------CRMVEMSCEE 206 (304)
T ss_pred HHHHHHHHHHHCC------CEEEEeCHHH
Confidence 8999999999999 5677776643
No 81
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.43 E-value=1.9e-12 Score=124.68 Aligned_cols=165 Identities=18% Similarity=0.166 Sum_probs=112.8
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhccc-C--CCCee-eeCCHHHHHhccCCCcEEEEecC
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE-G--QLPLT-GHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~-g--~~~i~-~~~s~~e~~~~l~~~dvIil~vp 81 (503)
|||+||| +|.||+.||..|+++|++|.+++|++++.+.+.+..... + +.... ...+..+.++. +|+||+++|
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~---aDvVilavp 77 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKR---ADVVILAVP 77 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhc---CCEEEEECC
Confidence 5899997 899999999999999999999999999887776532110 0 00011 22355666666 999999999
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCChhh---------------HHHHHHHHHhcCccEec------ccCCCChhhh
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLN---------------TERRIHEASQKGLLYLG------MGVSGGEEGA 140 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~---------------t~~~~~~l~~~gi~~i~------~pvsgg~~~a 140 (503)
.. .+.+++.++.+.+. +++|||+++....+ ++.+++.+.. +.+.+- +.+..+. ..
T Consensus 78 ~~-~~~~~l~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~-~~~VVka~~~~~a~~~~~~-~~ 153 (219)
T TIGR01915 78 WD-HVLKTLESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPE-TSRVVAAFHNLSAVLLQDV-DD 153 (219)
T ss_pred HH-HHHHHHHHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCC-CCeEeeccccCCHHHhcCC-CC
Confidence 84 78888888877664 58999999886531 1334444432 122332 2222221 11
Q ss_pred hcCC-cccCCCCHHHHHHHHHHHHHH-hcccCCCCcEEEeCCcchh
Q 010702 141 RHGP-SLMPGGSFEAYNNIRDILQKV-AAQVDDGPCVTYIGEGGSG 184 (503)
Q Consensus 141 ~~G~-~i~~gg~~~a~~~v~~ll~~i-g~~~~~~~~v~~~G~~G~g 184 (503)
..+. .+++|-++++.+.+..|.+.+ | ..++++|+.-.+
T Consensus 154 ~~~~~~~v~Gdd~~ak~~v~~L~~~~~G------~~~vd~G~l~~a 193 (219)
T TIGR01915 154 EVDCDVLVCGDDEEAKEVVAELAGRIDG------LRALDAGPLENA 193 (219)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHhcCC------CCcccCCchhhH
Confidence 2234 667777788899999999999 8 678888874433
No 82
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.43 E-value=1.8e-12 Score=120.90 Aligned_cols=166 Identities=16% Similarity=0.145 Sum_probs=113.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
||+|+|+|.|.||.+||++|+++||+|.+-+|+.++..+........ .+ ...+++++++. +|+||++||-. .
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~---~i-~~~~~~dA~~~---aDVVvLAVP~~-a 72 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGP---LI-TGGSNEDAAAL---ADVVVLAVPFE-A 72 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhcc---cc-ccCChHHHHhc---CCEEEEeccHH-H
Confidence 57899999999999999999999999999966655443333332211 23 34577777877 99999999985 7
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCCh---------------hhHHHHHHHHHhc----CccEecccCCCChhhhhcCC-c
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEWY---------------LNTERRIHEASQK----GLLYLGMGVSGGEEGARHGP-S 145 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~---------------~~t~~~~~~l~~~----gi~~i~~pvsgg~~~a~~G~-~ 145 (503)
+.+++.++...+. |+||||.+|..+ +.++.+++.++.. .++-+.+...-......... .
T Consensus 73 ~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVkAFn~i~a~~l~~~~~~~~~~~v 151 (211)
T COG2085 73 IPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKAFNTIPAAVLADLAKPGGRRDV 151 (211)
T ss_pred HHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchhhhhcccCHHHhccCCCcCCceeE
Confidence 8889999988775 999999999621 1233333333321 22333322221111111223 6
Q ss_pred ccCCCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHH
Q 010702 146 LMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNF 186 (503)
Q Consensus 146 i~~gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~ 186 (503)
+++|-|.++.+.+.++.+.+| -..+.+|+...++.
T Consensus 152 ~vagDD~~Ak~~v~~L~~~iG------~~~ld~G~L~~a~~ 186 (211)
T COG2085 152 LVAGDDAEAKAVVAELAEDIG------FRPLDAGPLENARI 186 (211)
T ss_pred EEecCcHHHHHHHHHHHHhcC------cceeeccccccccc
Confidence 778888899999999999999 67788888554443
No 83
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.42 E-value=4.3e-12 Score=141.87 Aligned_cols=191 Identities=13% Similarity=0.226 Sum_probs=135.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh-------hcccCCC----------CeeeeCCHHHHHh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-------AHREGQL----------PLTGHYTPRDFVL 68 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-------~~~~g~~----------~i~~~~s~~e~~~ 68 (503)
..+|+|||+|.||..||..++.+|++|++||++++.++...+. ....|.+ ++++..+++++ +
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~ 391 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGF-E 391 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHh-c
Confidence 3579999999999999999999999999999999876543211 0011100 46777777543 4
Q ss_pred ccCCCcEEEEecCCChhHHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc----CccEeccc-CCCChhhhhc
Q 010702 69 SIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMG-VSGGEEGARH 142 (503)
Q Consensus 69 ~l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~p-vsgg~~~a~~ 142 (503)
+ ||+||.++|++..++.-+ .++.+.++++.||...|++.+.+ ++++.+... |.||+..| .+.-.
T Consensus 392 ~---aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~--~la~~~~~p~r~~g~Hff~P~~~~~lV----- 461 (715)
T PRK11730 392 R---VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISIS--LLAKALKRPENFCGMHFFNPVHRMPLV----- 461 (715)
T ss_pred C---CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH--HHHhhcCCCccEEEEecCCcccccceE-----
Confidence 4 999999999998887655 78888888888777666655433 344444332 66777643 22211
Q ss_pred CCcccCC--CCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 010702 143 GPSLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAEL 220 (503)
Q Consensus 143 G~~i~~g--g~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i 220 (503)
-++.| .++++++.+..+++.+| +.++.+.+ ..|.. .|.+.+. .++|++.+.++ | .++++|
T Consensus 462 --Evv~g~~T~~~~~~~~~~~~~~lg------k~pv~v~d-~pGfv----~nRi~~~---~~~ea~~lv~~-G-a~~e~I 523 (715)
T PRK11730 462 --EVIRGEKTSDETIATVVAYASKMG------KTPIVVND-CPGFF----VNRVLFP---YFAGFSQLLRD-G-ADFRQI 523 (715)
T ss_pred --EeeCCCCCCHHHHHHHHHHHHHhC------CceEEecC-cCchh----HHHHHHH---HHHHHHHHHHc-C-CCHHHH
Confidence 23333 48899999999999999 88888854 55554 4666444 45899999875 5 899999
Q ss_pred HHHHH
Q 010702 221 AEIFD 225 (503)
Q Consensus 221 ~~~~~ 225 (503)
+.++.
T Consensus 524 D~a~~ 528 (715)
T PRK11730 524 DKVME 528 (715)
T ss_pred HHHHH
Confidence 99974
No 84
>PLN02712 arogenate dehydrogenase
Probab=99.42 E-value=3.7e-12 Score=140.72 Aligned_cols=158 Identities=15% Similarity=0.208 Sum_probs=114.4
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
+.++|||||+|.||..+|+.|.+.|++|.+|||+... +...+. ++....++++++.. .+|+||+|||. .
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~-------Gv~~~~~~~el~~~--~aDvVILavP~-~ 436 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKL-------GVSYFSDADDLCEE--HPEVILLCTSI-L 436 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHc-------CCeEeCCHHHHHhc--CCCEEEECCCh-H
Confidence 3578999999999999999999999999999999653 333332 24556788887652 28999999997 5
Q ss_pred hHHHHHHHHHh-cCCCCCEEEecCCCChhhHHHHHHHHHhcCccEe-cccCCCChhhhhcC---Cc-----ccCCCCHHH
Q 010702 85 PVDQTIAALSE-HMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGEEGARHG---PS-----LMPGGSFEA 154 (503)
Q Consensus 85 ~v~~vl~~l~~-~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i-~~pvsgg~~~a~~G---~~-----i~~gg~~~a 154 (503)
.+.++++++.. .+++|.+|+|++++..... +....+...++.|+ .+|+.|.+.+ ..| .. .+++++.+.
T Consensus 437 ~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~-~~~~~~l~~~~~~v~~HPm~G~e~~-~~G~~~~~~lf~~~~v~~~~~~ 514 (667)
T PLN02712 437 STEKVLKSLPFQRLKRSTLFVDVLSVKEFPR-NLFLQHLPQDFDILCTHPMFGPESG-KNGWNNLAFVFDKVRIGSDDRR 514 (667)
T ss_pred HHHHHHHHHHHhcCCCCcEEEECCCccHHHH-HHHHHhccCCCceEeeCCCCCcccc-ccchhhhhhhccCcEeCCCcch
Confidence 88999988875 5788999999999874333 33344444577888 5799988754 233 11 334555544
Q ss_pred HH---HHHHHHHHHhcccCCCCcEEEeCCc
Q 010702 155 YN---NIRDILQKVAAQVDDGPCVTYIGEG 181 (503)
Q Consensus 155 ~~---~v~~ll~~ig~~~~~~~~v~~~G~~ 181 (503)
.+ .+..+++.+| .+++.+.+.
T Consensus 515 ~~~~~~l~~l~~~lG------a~vv~ms~e 538 (667)
T PLN02712 515 VSRCDSFLDIFAREG------CRMVEMSCA 538 (667)
T ss_pred HHHHHHHHHHHHHcC------CEEEEeCHH
Confidence 44 4558888898 567777663
No 85
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.42 E-value=5.2e-12 Score=140.89 Aligned_cols=191 Identities=16% Similarity=0.248 Sum_probs=136.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh-------cccCCC----------CeeeeCCHHHHHh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA-------HREGQL----------PLTGHYTPRDFVL 68 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~~----------~i~~~~s~~e~~~ 68 (503)
..+|+|||+|.||..||..++.+|++|+++|++++.+++..+.. ...|.+ +++...+.+++ +
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~ 391 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGF-D 391 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHh-c
Confidence 35799999999999999999999999999999998765433210 111100 46667777543 4
Q ss_pred ccCCCcEEEEecCCChhHHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHh----cCccEeccc-CCCChhhhhc
Q 010702 69 SIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ----KGLLYLGMG-VSGGEEGARH 142 (503)
Q Consensus 69 ~l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~----~gi~~i~~p-vsgg~~~a~~ 142 (503)
+ ||+||.+||++..++.-+ .++.+.++++.|+...|++.+.+ +++..+.. -|.||+..| ++.-.+
T Consensus 392 ~---aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~--~ia~~~~~p~r~ig~Hff~P~~~~~lvE---- 462 (714)
T TIGR02437 392 N---VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISIS--LLAKALKRPENFCGMHFFNPVHRMPLVE---- 462 (714)
T ss_pred C---CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH--HHHhhcCCcccEEEEecCCCcccCceEe----
Confidence 4 999999999998887555 78888888888887666655433 34444432 267777643 222111
Q ss_pred CCcccCC--CCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 010702 143 GPSLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAEL 220 (503)
Q Consensus 143 G~~i~~g--g~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i 220 (503)
++.| .++++++.+..++..++ +.++.+++ ..|.. .|.+.. ..+.|++.++++ | .++++|
T Consensus 463 ---vv~g~~Ts~~~~~~~~~~~~~lg------k~pv~v~d-~pGfi----~NRl~~---~~~~ea~~l~~e-G-~~~~~I 523 (714)
T TIGR02437 463 ---VIRGEKSSDETIATVVAYASKMG------KTPIVVND-CPGFF----VNRVLF---PYFGGFSKLLRD-G-ADFVRI 523 (714)
T ss_pred ---ecCCCCCCHHHHHHHHHHHHHcC------CEEEEeCC-cccch----HHHHHH---HHHHHHHHHHHC-C-CCHHHH
Confidence 2333 47899999999999999 88888864 55654 466644 445999999875 6 899999
Q ss_pred HHHHH
Q 010702 221 AEIFD 225 (503)
Q Consensus 221 ~~~~~ 225 (503)
+.++.
T Consensus 524 D~a~~ 528 (714)
T TIGR02437 524 DKVME 528 (714)
T ss_pred HHHHH
Confidence 99974
No 86
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.41 E-value=4.3e-12 Score=141.93 Aligned_cols=191 Identities=16% Similarity=0.224 Sum_probs=136.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh-------cccCCC----------CeeeeCCHHHHHhc
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA-------HREGQL----------PLTGHYTPRDFVLS 69 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~~----------~i~~~~s~~e~~~~ 69 (503)
.+|+|||+|.||..||..++.+|++|.++|++++.+++..+.. ...|.+ +++.+.+++++ ++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSGF-KN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh-cc
Confidence 5799999999999999999999999999999998766533210 011100 46677777643 44
Q ss_pred cCCCcEEEEecCCChhHHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHh----cCccEeccc-CCCChhhhhcC
Q 010702 70 IQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ----KGLLYLGMG-VSGGEEGARHG 143 (503)
Q Consensus 70 l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~----~gi~~i~~p-vsgg~~~a~~G 143 (503)
||+||.+||++..++.-+ .++.+.++++.|+...|++.+.+ +++..+.. -|.||+..+ ++.-.+
T Consensus 415 ---aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~--~la~~~~~p~r~ig~Hff~P~~~m~LvE----- 484 (737)
T TIGR02441 415 ---ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIK--DIAAVSSRPEKVIGMHYFSPVDKMQLLE----- 484 (737)
T ss_pred ---CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH--HHHhhcCCccceEEEeccCCcccCceEE-----
Confidence 999999999998887655 78888888888887655554433 44444432 267777643 221111
Q ss_pred CcccC--CCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Q 010702 144 PSLMP--GGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELA 221 (503)
Q Consensus 144 ~~i~~--gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~ 221 (503)
++. ..++++++.+..+++.++ +.++.+++ ..|.. -|.+. ...+.|++.++++ | +++++|+
T Consensus 485 --vv~g~~Ts~~~~~~~~~~~~~lg------k~pv~v~d-~pGFi----~NRi~---~~~~~ea~~lv~e-G-v~~~~ID 546 (737)
T TIGR02441 485 --IITHDGTSKDTLASAVAVGLKQG------KVVIVVKD-GPGFY----TTRCL---GPMLAEVIRLLQE-G-VDPKKLD 546 (737)
T ss_pred --EeCCCCCCHHHHHHHHHHHHHCC------CeEEEECC-cCCch----HHHHH---HHHHHHHHHHHHc-C-CCHHHHH
Confidence 233 358899999999999999 88888864 55554 45554 4566999999876 6 8999999
Q ss_pred HHHHH
Q 010702 222 EIFDE 226 (503)
Q Consensus 222 ~~~~~ 226 (503)
.++..
T Consensus 547 ~a~~~ 551 (737)
T TIGR02441 547 KLTTK 551 (737)
T ss_pred HHHHH
Confidence 98643
No 87
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.41 E-value=7.8e-12 Score=139.43 Aligned_cols=191 Identities=17% Similarity=0.243 Sum_probs=134.3
Q ss_pred CCcEEEEcccHHHHHHHHHHH-hCCCcEEEEeCChhHHHHHHHhh-------cccCC----------CCeeeeCCHHHHH
Q 010702 6 LSRIGLAGLAVMGQNLALNVA-EKGFPISVYNRTTSKVDETLDRA-------HREGQ----------LPLTGHYTPRDFV 67 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~-~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~----------~~i~~~~s~~e~~ 67 (503)
.++|+|||+|.||..||..++ .+|++|++||++++.++...+.. ...+. -+++..+++++ +
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~ 382 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRG-F 382 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHH-h
Confidence 357999999999999999998 58999999999998655432110 00000 04667777754 3
Q ss_pred hccCCCcEEEEecCCChhHHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc----CccEecccC-CCChhhhh
Q 010702 68 LSIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGV-SGGEEGAR 141 (503)
Q Consensus 68 ~~l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pv-sgg~~~a~ 141 (503)
++ ||+||.++|++.+++.-+ .++.+.+++++|+...|++.+.+ ++++.+... |.||+..|- +.-.
T Consensus 383 ~~---adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~--~la~~~~~p~r~~g~HffnP~~~~~lV---- 453 (699)
T TIGR02440 383 KD---VDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIG--QIAAAASRPENVIGLHYFSPVEKMPLV---- 453 (699)
T ss_pred cc---CCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHH--HHHHhcCCcccEEEEecCCccccCceE----
Confidence 44 999999999998887654 78888888887777655554433 344444322 667776542 2111
Q ss_pred cCCcccC--CCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 010702 142 HGPSLMP--GGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAE 219 (503)
Q Consensus 142 ~G~~i~~--gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~ 219 (503)
-++. ..++++++.+..+++.+| +.++.+.+ ..|..+ |.+. ...++|++.++++ | +++++
T Consensus 454 ---Evv~g~~T~~~~~~~~~~~~~~~g------k~pv~v~d-~pGfi~----nRl~---~~~~~Ea~~l~~~-G-~~~~d 514 (699)
T TIGR02440 454 ---EVIPHAGTSEQTIATTVALAKKQG------KTPIVVAD-KAGFYV----NRIL---APYMNEAARLLLE-G-EPVEH 514 (699)
T ss_pred ---EEeCCCCCCHHHHHHHHHHHHHcC------CeEEEEcc-ccchHH----HHHH---HHHHHHHHHHHHC-C-CCHHH
Confidence 1333 358899999999999999 88888854 556554 5554 4556999999884 6 79999
Q ss_pred HHHHHH
Q 010702 220 LAEIFD 225 (503)
Q Consensus 220 i~~~~~ 225 (503)
|+.++.
T Consensus 515 ID~a~~ 520 (699)
T TIGR02440 515 IDKALV 520 (699)
T ss_pred HHHHHH
Confidence 999974
No 88
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.40 E-value=9.8e-13 Score=139.72 Aligned_cols=118 Identities=16% Similarity=0.313 Sum_probs=100.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH---HhCCCcchhhhHHHHHHHHhcCC-CCCCC
Q 010702 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARI---WKGGCIIRAVFLDRIKKAYQRNP-NLASL 400 (503)
Q Consensus 325 ~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~i---W~~Gcii~s~lL~~i~~~~~~~~-~~~~l 400 (503)
.++||++||+||+|+|+.|++++|+|.+++++. ++|.+++.++ |+.| .++|+++++...++..++ ..+..
T Consensus 181 ~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~-----Gld~~~l~~vf~~~~~g-~~~S~llei~~~~l~~~d~~~~~f 254 (493)
T PLN02350 181 GGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVG-----GLSNEELAEVFAEWNKG-ELESFLIEITADIFSVKDDKGDGY 254 (493)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHcCC-CccchHHHHHHHHHhhcCCCCCCc
Confidence 489999999999999999999999999999542 3898787777 9988 789999999888876553 22356
Q ss_pred cchhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCCcc
Q 010702 401 VVDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLP 450 (503)
Q Consensus 401 l~~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~--y~~~~~~~~~~ 450 (503)
++|...++..+|+|| ||+++.|.+.|+|+|.|++++. |.++++.+|..
T Consensus 255 ~l~~i~Kd~~~kGTg--~w~~~~A~~lgv~~p~i~~av~~r~~s~~k~~r~~ 304 (493)
T PLN02350 255 LVDKILDKTGMKGTG--KWTVQQAAELSVAAPTIAASLDARYLSGLKEERVA 304 (493)
T ss_pred hHHHHHhhhcccchH--HHHHHHHHHhCCCccHHHHHHHHHHHhccHHHHHH
Confidence 777777788889999 9999999999999999999998 88888888765
No 89
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.40 E-value=2.4e-12 Score=120.03 Aligned_cols=153 Identities=18% Similarity=0.318 Sum_probs=101.4
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc-------ccCCC----------CeeeeCCHHHHHhcc
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH-------REGQL----------PLTGHYTPRDFVLSI 70 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-------~~g~~----------~i~~~~s~~e~~~~l 70 (503)
||+|||+|.||.++|..++.+|++|.+||++++.++...+.-. ..+.+ ++...+++++++ +
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~- 78 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-D- 78 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-T-
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-h-
Confidence 6999999999999999999999999999999987654432210 01111 578888998887 5
Q ss_pred CCCcEEEEecCCChhHHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHh--c--CccEecccCC-CChhhhhcCC
Q 010702 71 QRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ--K--GLLYLGMGVS-GGEEGARHGP 144 (503)
Q Consensus 71 ~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~--~--gi~~i~~pvs-gg~~~a~~G~ 144 (503)
+|+||.++|+...++.-+ .+|.+.++++.+|...|++.+.. +++..+.. + |+||+..|-. .-.
T Consensus 79 --adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~--~la~~~~~p~R~ig~Hf~~P~~~~~lV------- 147 (180)
T PF02737_consen 79 --ADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSIS--ELAAALSRPERFIGMHFFNPPHLMPLV------- 147 (180)
T ss_dssp --ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HH--HHHTTSSTGGGEEEEEE-SSTTT--EE-------
T ss_pred --hheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHH--HHHhccCcCceEEEEecccccccCceE-------
Confidence 999999999998887655 78888888888887776665433 34443322 2 6677764421 111
Q ss_pred cccC--CCCHHHHHHHHHHHHHHhcccCCCCcEEEeC
Q 010702 145 SLMP--GGSFEAYNNIRDILQKVAAQVDDGPCVTYIG 179 (503)
Q Consensus 145 ~i~~--gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G 179 (503)
-++. ..++++++.+..+++.+| +.++.+.
T Consensus 148 Evv~~~~T~~~~~~~~~~~~~~~g------k~pv~v~ 178 (180)
T PF02737_consen 148 EVVPGPKTSPETVDRVRALLRSLG------KTPVVVK 178 (180)
T ss_dssp EEEE-TTS-HHHHHHHHHHHHHTT-------EEEEEE
T ss_pred EEeCCCCCCHHHHHHHHHHHHHCC------CEEEEec
Confidence 1233 358899999999999999 7777663
No 90
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.39 E-value=3.6e-11 Score=117.64 Aligned_cols=193 Identities=15% Similarity=0.091 Sum_probs=126.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC---c-EEEEeC-ChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF---P-ISVYNR-TTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~---~-V~v~dr-~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
+||+|||+|.||.+++..|+++|+ + +.+++| ++++.+.+.+.. ++..+.+.++++++ +|+||+++|
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~---~DiViiavp 75 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARY------NVSTTTDWKQHVTS---VDTIVLAMP 75 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHc------CcEEeCChHHHHhc---CCEEEEecC
Confidence 589999999999999999998873 3 777887 467777766542 24566788888876 999999999
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEe-cccCCCChhhhhcCC-c--ccCCCCHHHHHH
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGEEGARHGP-S--LMPGGSFEAYNN 157 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i-~~pvsgg~~~a~~G~-~--i~~gg~~~a~~~ 157 (503)
+. ..+++++++.+.++ +++||+++.+..... +.+.+.. +...+ -+|-.. .....|. . .-..++++..+.
T Consensus 76 ~~-~~~~v~~~l~~~~~-~~~vis~~~gi~~~~--l~~~~~~-~~~v~r~~Pn~a--~~v~~g~~~~~~~~~~~~~~~~~ 148 (245)
T PRK07634 76 PS-AHEELLAELSPLLS-NQLVVTVAAGIGPSY--LEERLPK-GTPVAWIMPNTA--AEIGKSISLYTMGQSVNETHKET 148 (245)
T ss_pred HH-HHHHHHHHHHhhcc-CCEEEEECCCCCHHH--HHHHcCC-CCeEEEECCcHH--HHHhcCCeEEeeCCCCCHHHHHH
Confidence 85 78999999888775 679999888764443 3333322 22222 234222 2333443 2 223568899999
Q ss_pred HHHHHHHHhcccCCCCcEEEeCCc--chhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010702 158 IRDILQKVAAQVDDGPCVTYIGEG--GSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDE 226 (503)
Q Consensus 158 v~~ll~~ig~~~~~~~~v~~~G~~--G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~ 226 (503)
++.+|+.+| .++ ++.+. -..+.+--..-++.+..+..+.++ +.+.| ++.++..+++.+
T Consensus 149 v~~lf~~~G------~~~-~~~e~~~~~~~a~~gs~pa~~~~~~~a~~~~---~~~~G-l~~~~a~~~~~~ 208 (245)
T PRK07634 149 LQLILKGIG------TSQ-LCTEEEVHQLTAVTGSAPAFLYYFAESLIEA---TKSYG-VDEETAKHLVIQ 208 (245)
T ss_pred HHHHHHhCC------CEE-EECHHHcchHHhhhcchHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHHH
Confidence 999999999 333 45431 111111112222333344444444 56778 999998888743
No 91
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.39 E-value=1.7e-10 Score=112.95 Aligned_cols=184 Identities=21% Similarity=0.216 Sum_probs=130.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC----CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKG----FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G----~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
+++|||||.|+||.+|+..|.++| .+|++.||++++.+.+.+.. ++..+.+..+++.. +|+||++|+
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~------g~~~~~~~~~~~~~---advv~LavK 71 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEY------GVVTTTDNQEAVEE---ADVVFLAVK 71 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHc------CCcccCcHHHHHhh---CCEEEEEeC
Confidence 468999999999999999999999 68999999999988676653 22336777788887 999999999
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec-ccCCCChhhhhcCC-cccCC--CCHHHHHH
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEGARHGP-SLMPG--GSFEAYNN 157 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsgg~~~a~~G~-~i~~g--g~~~a~~~ 157 (503)
+ ..+++++.++.+ ..++++||....+.+ ...+...+. +.+.+- +|-. +.....|. .+..+ .+++..+.
T Consensus 72 P-q~~~~vl~~l~~-~~~~~lvISiaAGv~--~~~l~~~l~--~~~vvR~MPNt--~a~vg~g~t~i~~~~~~~~~~~~~ 143 (266)
T COG0345 72 P-QDLEEVLSKLKP-LTKDKLVISIAAGVS--IETLERLLG--GLRVVRVMPNT--PALVGAGVTAISANANVSEEDKAF 143 (266)
T ss_pred h-HhHHHHHHHhhc-ccCCCEEEEEeCCCC--HHHHHHHcC--CCceEEeCCCh--HHHHcCcceeeecCccCCHHHHHH
Confidence 8 589999999998 778999998877653 334444443 333333 3422 22334555 33333 37788889
Q ss_pred HHHHHHHHhcccCCCCcEEEeCCc---------chhHHHHhHHHHHHHHHHHHHHHHHHHH-HHhCCCCHHHHHHHHH
Q 010702 158 IRDILQKVAAQVDDGPCVTYIGEG---------GSGNFVKMVHNGIEYGDMQLISEAYDVL-KHVGGLSNAELAEIFD 225 (503)
Q Consensus 158 v~~ll~~ig~~~~~~~~v~~~G~~---------G~g~~vK~v~N~i~~~~~~~~~Ea~~l~-~~~g~~~~~~i~~~~~ 225 (503)
+..+|+.+| .++++.+. |+|-. .+..+.|++.-+ .+.| ++.++..++..
T Consensus 144 v~~l~~~~G-------~v~~v~E~~~da~TaisGSgPA-----------yv~~~iEal~~agv~~G-l~~~~A~~l~~ 202 (266)
T COG0345 144 VEALLSAVG-------KVVEVEESLMDAVTALSGSGPA-----------YVFLFIEALADAGVRLG-LPREEARELAA 202 (266)
T ss_pred HHHHHHhcC-------CeEEechHHhhHHHHHhcCCHH-----------HHHHHHHHHHHHHHHcC-CCHHHHHHHHH
Confidence 999999999 46666532 33322 233444554443 4667 99999888764
No 92
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=99.39 E-value=1.9e-12 Score=112.94 Aligned_cols=103 Identities=20% Similarity=0.296 Sum_probs=87.3
Q ss_pred chhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhh-ccccccCCCchhHHHHH
Q 010702 182 GSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADI-FKVKDEYGEGELVDKIL 260 (503)
Q Consensus 182 G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~-l~~~~~~~~~~~ld~i~ 260 (503)
|+|+.+|+++|.+..+.+.+++|++.++++.| +|++++.+++ +.+.+.|+.++.+.+. +.. ++|.++|.++.+.
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~G-ld~~~~~~vl---~~~~~~s~~~~~~~~~~~~~-~~~~~~f~l~~~~ 75 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAG-LDPEQLLDVL---SAGSGGSWMLKNRAPRMILN-GDFDPGFSLDLAR 75 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-S-HHHHHHHH---HTSTTHBHHHHHHHHHHHHT-TTTCSSSBHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHH---ccCCcCchHHHhhhhhhhhc-ccCCccchhHhhc
Confidence 78999999999999999999999999999999 9999999998 5788899999988763 443 6688999999999
Q ss_pred hhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHh
Q 010702 261 DKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296 (503)
Q Consensus 261 ~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s 296 (503)
||+. ++++.|.+.|+|+|+...+ .+.|..
T Consensus 76 KDl~------l~~~~a~~~g~~~p~~~~~-~~~~~~ 104 (122)
T PF14833_consen 76 KDLR------LALDLAKEAGVPLPLGSAA-RQLYQA 104 (122)
T ss_dssp HHHH------HHHHHHHHTT---HHHHHH-HHHHHH
T ss_pred cHHH------HHHHHHHHcCCCCHHHHHH-HHHHHH
Confidence 9996 9999999999999999876 444443
No 93
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.38 E-value=1.5e-11 Score=137.39 Aligned_cols=191 Identities=19% Similarity=0.273 Sum_probs=134.5
Q ss_pred CCcEEEEcccHHHHHHHHHHH-hCCCcEEEEeCChhHHHHHHHh-------hcccCCC----------CeeeeCCHHHHH
Q 010702 6 LSRIGLAGLAVMGQNLALNVA-EKGFPISVYNRTTSKVDETLDR-------AHREGQL----------PLTGHYTPRDFV 67 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~-~~G~~V~v~dr~~~~~~~l~~~-------~~~~g~~----------~i~~~~s~~e~~ 67 (503)
..+|+|||+|.||.+||..++ .+|++|++||++++.++...+. ....+.+ +++.+++.++ +
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~ 387 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRG-F 387 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHH-h
Confidence 357999999999999999999 8899999999999865543211 0000000 4666777643 3
Q ss_pred hccCCCcEEEEecCCChhHHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc----CccEecccC-CCChhhhh
Q 010702 68 LSIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGV-SGGEEGAR 141 (503)
Q Consensus 68 ~~l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pv-sgg~~~a~ 141 (503)
++ ||+||.++|++..++.-+ .++.+.++++.|+...|++.+.+ ++++.+... |.||+..|- +.-.
T Consensus 388 ~~---aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~--~la~~~~~p~r~ig~Hff~P~~~~~lV---- 458 (708)
T PRK11154 388 KH---ADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIG--QIAAAAARPEQVIGLHYFSPVEKMPLV---- 458 (708)
T ss_pred cc---CCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH--HHHHhcCcccceEEEecCCccccCceE----
Confidence 44 999999999998887655 78888888888887666665433 344444322 566665431 1111
Q ss_pred cCCcccC--CCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 010702 142 HGPSLMP--GGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAE 219 (503)
Q Consensus 142 ~G~~i~~--gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~ 219 (503)
-+++ ..++++++.+..+++.++ +.++.+.+ ..|..+ |.+. ..+++|++.++++ | +++++
T Consensus 459 ---Evv~g~~Ts~~~~~~~~~~~~~~g------k~pv~v~d-~pGfi~----nRl~---~~~~~EA~~lv~e-G-v~~~d 519 (708)
T PRK11154 459 ---EVIPHAKTSAETIATTVALAKKQG------KTPIVVRD-GAGFYV----NRIL---APYINEAARLLLE-G-EPIEH 519 (708)
T ss_pred ---EEECCCCCCHHHHHHHHHHHHHcC------CceEEEec-cCcHHH----HHHH---HHHHHHHHHHHHc-C-CCHHH
Confidence 2333 358999999999999999 77888854 556554 5554 4555999999986 6 89999
Q ss_pred HHHHHH
Q 010702 220 LAEIFD 225 (503)
Q Consensus 220 i~~~~~ 225 (503)
|+.++.
T Consensus 520 ID~a~~ 525 (708)
T PRK11154 520 IDAALV 525 (708)
T ss_pred HHHHHH
Confidence 999874
No 94
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.38 E-value=2.3e-12 Score=107.33 Aligned_cols=90 Identities=20% Similarity=0.337 Sum_probs=76.5
Q ss_pred cEEEEcccHHHHHHHHHHHhCC---CcEEEE-eCChhHHHHHHHhhcccCCCCeeeeC-CHHHHHhccCCCcEEEEecCC
Q 010702 8 RIGLAGLAVMGQNLALNVAEKG---FPISVY-NRTTSKVDETLDRAHREGQLPLTGHY-TPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G---~~V~v~-dr~~~~~~~l~~~~~~~g~~~i~~~~-s~~e~~~~l~~~dvIil~vp~ 82 (503)
||||||.|.||.+|++.|.++| ++|.++ +|++++.+++.++.. +.... +..++++. +|+||+|||+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~------~~~~~~~~~~~~~~---advvilav~p 71 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG------VQATADDNEEAAQE---ADVVILAVKP 71 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT------TEEESEEHHHHHHH---TSEEEE-S-G
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc------cccccCChHHhhcc---CCEEEEEECH
Confidence 6999999999999999999999 999955 999999999887642 34445 78999998 9999999999
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCC
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st 108 (503)
..+.+++.++ +...++++|||..+
T Consensus 72 -~~~~~v~~~i-~~~~~~~~vis~~a 95 (96)
T PF03807_consen 72 -QQLPEVLSEI-PHLLKGKLVISIAA 95 (96)
T ss_dssp -GGHHHHHHHH-HHHHTTSEEEEEST
T ss_pred -HHHHHHHHHH-hhccCCCEEEEeCC
Confidence 4899999999 77779999999875
No 95
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=99.38 E-value=1.5e-11 Score=124.30 Aligned_cols=255 Identities=14% Similarity=0.112 Sum_probs=150.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh-cc---cCCC-Ceee-eCCHHHHHhccCCCcEEEEe
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA-HR---EGQL-PLTG-HYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~-~~---~g~~-~i~~-~~s~~e~~~~l~~~dvIil~ 79 (503)
.|||+|||+|.||+-+|..|++.|++|++++|+.+.++.+.+.+ .. .+.. .... ..+. +.++..|+||+|
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~----~~~~~~D~viv~ 77 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETA----DAAEPIHRLLLA 77 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCc----ccccccCEEEEE
Confidence 47999999999999999999999999999999988888776542 11 0100 0000 1111 112348999999
Q ss_pred cCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc----CccEecccCCC-ChhhhhcCC-cccCCC-CH
Q 010702 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSG-GEEGARHGP-SLMPGG-SF 152 (503)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pvsg-g~~~a~~G~-~i~~gg-~~ 152 (503)
++.. ++++++..+.+.+.++++|+-+-|+... .+.+.+.+... |+.++++...+ |.. ...|. .+..|. +.
T Consensus 78 vK~~-~~~~al~~l~~~l~~~t~vv~lQNGv~~-~e~l~~~~~~~~v~~g~~~~ga~~~~pg~v-~~~~~g~~~~G~~~~ 154 (305)
T PRK05708 78 CKAY-DAEPAVASLAHRLAPGAELLLLQNGLGS-QDAVAARVPHARCIFASSTEGAFRDGDWRV-VFAGHGFTWLGDPRN 154 (305)
T ss_pred CCHH-hHHHHHHHHHhhCCCCCEEEEEeCCCCC-HHHHHHhCCCCcEEEEEeeeceecCCCCEE-EEeceEEEEEcCCCC
Confidence 9995 7889999999999999999999888642 22344444321 22233222111 111 11122 122332 22
Q ss_pred HHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHH------------------HHHHHHHHHHHHHHHHhCC
Q 010702 153 EAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIE------------------YGDMQLISEAYDVLKHVGG 214 (503)
Q Consensus 153 ~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~------------------~~~~~~~~Ea~~l~~~~g~ 214 (503)
+..+++.++|...+. .+.+..+.-...+-|++-|... ....+++.|++.++++.|
T Consensus 155 ~~~~~l~~~l~~ag~------~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~G- 227 (305)
T PRK05708 155 PTAPAWLDDLREAGI------PHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRCG- 227 (305)
T ss_pred cchHHHHHHHHhcCC------CCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHcC-
Confidence 334556666665552 2222223334445555544310 134577899999999988
Q ss_pred CC--HHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHH
Q 010702 215 LS--NAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (503)
Q Consensus 215 ~~--~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~A 289 (503)
++ .+.+.+.+.......... -.++..++.+.+. ..+|.+.. ..++.|+++|+|+|.....
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~-~sSM~qD~~~gR~-----tEid~i~G---------~vvr~a~~~Gv~~P~~~~l 289 (305)
T PRK05708 228 QPAAAANLHEEVQRVIQATAAN-YSSMYQDVRAGRR-----TEISYLLG---------YACRAADRHGLPLPRLQHL 289 (305)
T ss_pred CCccHHHHHHHHHHHHHhccCC-CcHHHHHHHcCCc-----eeehhhhh---------HHHHHHHHcCCCCchHHHH
Confidence 75 233433332211111111 2344455554332 46777765 5789999999999988764
No 96
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.37 E-value=1.7e-10 Score=115.17 Aligned_cols=147 Identities=12% Similarity=0.136 Sum_probs=104.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC----CcEEEEeCCh-hHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKG----FPISVYNRTT-SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G----~~V~v~dr~~-~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
|++|+|||+|.||.+++..|.++| ++|.+|+|++ ++.+.+..... .+....+..+++.. +|+||+|+
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~-----~~~~~~~~~e~~~~---aDvVilav 72 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYP-----TVELADNEAEIFTK---CDHSFICV 72 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcC-----CeEEeCCHHHHHhh---CCEEEEec
Confidence 368999999999999999999998 7899999875 44444443221 13456778887776 99999999
Q ss_pred CCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec-ccCCCChhhhhcCC-cccCC--CCHHHHH
Q 010702 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEGARHGP-SLMPG--GSFEAYN 156 (503)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsgg~~~a~~G~-~i~~g--g~~~a~~ 156 (503)
|+ ..+.+++.++.+.+.++.+||...++.... ++.+.+.. ...+- +|-. +.....|. .+..+ -+++..+
T Consensus 73 pp-~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~--~l~~~~~~--~~vvR~MPN~--~~~~g~g~t~~~~~~~~~~~~~~ 145 (277)
T PRK06928 73 PP-LAVLPLLKDCAPVLTPDRHVVSIAAGVSLD--DLLEITPG--LQVSRLIPSL--TSAVGVGTSLVAHAETVNEANKS 145 (277)
T ss_pred CH-HHHHHHHHHHHhhcCCCCEEEEECCCCCHH--HHHHHcCC--CCEEEEeCcc--HHHHhhhcEEEecCCCCCHHHHH
Confidence 97 579999999999888888999988876433 44444432 12222 3322 23345566 33333 3567788
Q ss_pred HHHHHHHHHhc
Q 010702 157 NIRDILQKVAA 167 (503)
Q Consensus 157 ~v~~ll~~ig~ 167 (503)
.++.+|+.+|.
T Consensus 146 ~v~~l~~~~G~ 156 (277)
T PRK06928 146 RLEETLSHFSH 156 (277)
T ss_pred HHHHHHHhCCC
Confidence 99999999994
No 97
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.34 E-value=3.6e-11 Score=135.80 Aligned_cols=160 Identities=14% Similarity=0.170 Sum_probs=121.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.+|+|||+|.||.++++.|.++| ++|.+||+++++.+.+.+.+.. .....+..+++++ +|+||+|+|..
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~-----~~~~~~~~~~~~~---aDvVilavp~~- 74 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVI-----DRGEEDLAEAVSG---ADVIVLAVPVL- 74 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCC-----CcccCCHHHHhcC---CCEEEECCCHH-
Confidence 58999999999999999999999 4799999999987776654321 1134466676665 99999999984
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec-ccCCCChh-hh-------hcCC--ccc--CCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEE-GA-------RHGP--SLM--PGGS 151 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsgg~~-~a-------~~G~--~i~--~gg~ 151 (503)
.+.++++.+.+.++++.+|+|++++.......+.+.+....++|+. .|++|++. +. ..+. .+. .+++
T Consensus 75 ~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~ 154 (735)
T PRK14806 75 AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETD 154 (735)
T ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCC
Confidence 7899999999988899999999998876666666655444567764 68887653 11 1222 223 3467
Q ss_pred HHHHHHHHHHHHHHhcccCCCCcEEEeCCc
Q 010702 152 FEAYNNIRDILQKVAAQVDDGPCVTYIGEG 181 (503)
Q Consensus 152 ~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~ 181 (503)
++.++.++++|+.+| ..++++.+.
T Consensus 155 ~~~~~~~~~l~~~~G------~~~~~~~~~ 178 (735)
T PRK14806 155 PAALARVDRLWRAVG------ADVLHMDVA 178 (735)
T ss_pred HHHHHHHHHHHHHcC------CEEEEcCHH
Confidence 888999999999999 567777653
No 98
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.34 E-value=6.5e-12 Score=114.56 Aligned_cols=99 Identities=17% Similarity=0.323 Sum_probs=81.9
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCC-------CeeeeCCHHHHHhccCCCcEEEEec
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQL-------PLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~-------~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
||+|||.|.||.++|..|+++|++|++|.|+++.++.+.+.+.+...+ ++...+++++++++ +|+|+++|
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~---ad~Iiiav 77 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALED---ADIIIIAV 77 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT----SEEEE-S
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCc---ccEEEecc
Confidence 699999999999999999999999999999999999888765421111 56788899999887 99999999
Q ss_pred CCChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
|. ...+++++++.++++++.+||.++.+.
T Consensus 78 Ps-~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 78 PS-QAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp -G-GGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cH-HHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 99 478999999999999999999988775
No 99
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.32 E-value=7.3e-11 Score=119.15 Aligned_cols=194 Identities=13% Similarity=0.086 Sum_probs=126.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
.++|||||+|.||.++|++|.+.|++|.+++++.++........ ++.. .+++++++. +|+|+++||+. .
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~------G~~~-~s~~eaa~~---ADVVvLaVPd~-~ 85 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEAD------GFEV-LTVAEAAKW---ADVIMILLPDE-V 85 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHC------CCee-CCHHHHHhc---CCEEEEcCCHH-H
Confidence 36899999999999999999999999999988765544443321 2333 388888887 99999999986 5
Q ss_pred HHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec-ccCCCChhh-----hhcCC-ccc-CCCC--HHH
Q 010702 86 VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEG-----ARHGP-SLM-PGGS--FEA 154 (503)
Q Consensus 86 v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsgg~~~-----a~~G~-~i~-~gg~--~~a 154 (503)
...++ +++.+.+++|.+|+.+....... . ......++..+- +|-..+... ...|. .++ +..+ .++
T Consensus 86 ~~~V~~~~I~~~Lk~g~iL~~a~G~~i~~---~-~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a 161 (330)
T PRK05479 86 QAEVYEEEIEPNLKEGAALAFAHGFNIHF---G-QIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNA 161 (330)
T ss_pred HHHHHHHHHHhcCCCCCEEEECCCCChhh---c-eeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHH
Confidence 58888 78999999999986665533211 1 111222343333 354444311 12344 444 5555 889
Q ss_pred HHHHHHHHHHHhcccCCCCcEE--EeCCcc-hhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 010702 155 YNNIRDILQKVAAQVDDGPCVT--YIGEGG-SGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAEL 220 (503)
Q Consensus 155 ~~~v~~ll~~ig~~~~~~~~v~--~~G~~G-~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i 220 (503)
.+.+..++..+|+..-+ ++ .+.++- .--|=- +..+..+...++..++.++...| ++|+..
T Consensus 162 ~~~a~~l~~aiG~~~~g---~~~ttf~~e~~~dl~ge--q~vl~gg~~~l~~~~~e~l~eaG-~~pe~A 224 (330)
T PRK05479 162 KDLALAYAKGIGGTRAG---VIETTFKEETETDLFGE--QAVLCGGLTELIKAGFETLVEAG-YQPEMA 224 (330)
T ss_pred HHHHHHHHHHcCCCccc---eeeeeecccccccchhh--HHHHhhHHHHHHHHHHHHHHHcC-CCHHHH
Confidence 99999999999953110 11 111110 000000 12233456778888999999999 999864
No 100
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.31 E-value=6e-10 Score=110.12 Aligned_cols=231 Identities=12% Similarity=0.084 Sum_probs=136.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC----cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF----PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~----~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
|||+|||+|.||.+|+..|.++|. ++++++|++++. ......++.++++. +|+||+|+|+
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-------------~~~~~~~~~~~~~~---~D~Vilavkp 67 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-------------PFVYLQSNEELAKT---CDIIVLAVKP 67 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-------------CeEEeCChHHHHHh---CCEEEEEeCH
Confidence 689999999999999999999872 499999986541 12345677887776 9999999998
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHh--cCccEecccCCCChhhhhcCC-cccCC--CCHHHHHH
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ--KGLLYLGMGVSGGEEGARHGP-SLMPG--GSFEAYNN 157 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~--~gi~~i~~pvsgg~~~a~~G~-~i~~g--g~~~a~~~ 157 (503)
..+++++.++.+.+.++.+|.++++......+ +.+.. +-++++. +.+.....|. .+.++ .+++..+.
T Consensus 68 -~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~---~~~~~~~~vvr~mP----n~p~~~g~g~t~i~~~~~~~~~~~~~ 139 (260)
T PTZ00431 68 -DLAGKVLLEIKPYLGSKLLISICGGLNLKTLE---EMVGVEAKIVRVMP----NTPSLVGQGSLVFCANNNVDSTDKKK 139 (260)
T ss_pred -HHHHHHHHHHHhhccCCEEEEEeCCccHHHHH---HHcCCCCeEEEECC----CchhHhcceeEEEEeCCCCCHHHHHH
Confidence 58999999999888766666666666533332 22221 1123222 1123334455 33332 35677889
Q ss_pred HHHHHHHHhcccCCCCcEEEeCCc--chhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchh
Q 010702 158 IRDILQKVAAQVDDGPCVTYIGEG--GSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESF 235 (503)
Q Consensus 158 v~~ll~~ig~~~~~~~~v~~~G~~--G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~ 235 (503)
++.+|+.+| .++.+.+. -....+-=+--++.+.++..+.++ +.+.| ++.++..++..+.-.|
T Consensus 140 v~~l~~~~G-------~~~~v~E~~~d~~ta~~gsgPA~~~~~~~al~~~---~v~~G-l~~~~a~~l~~~~~~G----- 203 (260)
T PTZ00431 140 VIDIFSACG-------IIQEIKEKDMDIATAISGCGPAYVFLFIESLIDA---GVKNG-LNRDVSKNLVLQTILG----- 203 (260)
T ss_pred HHHHHHhCC-------cEEEEChHHcchhhhhcCCHHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHHHHHHH-----
Confidence 999999999 34444331 000000001123334444555554 45667 9999988886432222
Q ss_pred HHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcch
Q 010702 236 LVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPT 285 (503)
Q Consensus 236 l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~ 285 (503)
+...+.+ .+.+|. +...+....-||..-.+..-.+.|+.--+
T Consensus 204 ----~a~ll~~-~~~~~~---~l~~~v~spgG~T~~gl~~le~~g~~~~~ 245 (260)
T PTZ00431 204 ----SVHMVKA-SDQPVQ---QLKDDVCSPGGITIVGLYTLEKHAFKYTV 245 (260)
T ss_pred ----HHHHHHh-cCCCHH---HHHHhCCCCChHHHHHHHHHHHCChHHHH
Confidence 2233332 112222 22222333445655555555667776433
No 101
>PLN02712 arogenate dehydrogenase
Probab=99.31 E-value=1.2e-10 Score=128.75 Aligned_cols=158 Identities=10% Similarity=0.144 Sum_probs=111.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+++|||||+|.||..+|..|.+.|++|.+|||+... +...+. ++..+.++++++.. .+|+||+|||. ..
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~-------Gv~~~~d~~e~~~~--~aDvViLavP~-~~ 120 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSL-------GVSFFLDPHDLCER--HPDVILLCTSI-IS 120 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHc-------CCEEeCCHHHHhhc--CCCEEEEcCCH-HH
Confidence 468999999999999999999999999999998553 332222 24557788886531 28999999998 47
Q ss_pred HHHHHHHHH-hcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec-ccCCCChhh--hhcCC-cccC----CCCH---H
Q 010702 86 VDQTIAALS-EHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEG--ARHGP-SLMP----GGSF---E 153 (503)
Q Consensus 86 v~~vl~~l~-~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsgg~~~--a~~G~-~i~~----gg~~---~ 153 (503)
+.++++++. +.++++.+|+|++++.....+.+...+ ..+..|+. .|+.|.+.. ...+. .++. +.++ +
T Consensus 121 ~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l-~~~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~ 199 (667)
T PLN02712 121 TENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYL-PEDFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVS 199 (667)
T ss_pred HHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhc-CCCCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHH
Confidence 899998885 678899999999988754444444433 33667887 488876631 12222 3333 2222 3
Q ss_pred HHHHHHHHHHHHhcccCCCCcEEEeCCc
Q 010702 154 AYNNIRDILQKVAAQVDDGPCVTYIGEG 181 (503)
Q Consensus 154 a~~~v~~ll~~ig~~~~~~~~v~~~G~~ 181 (503)
.++.++++++.+| .+++.+.+.
T Consensus 200 ~~~~l~~l~~~lG------a~v~~ms~e 221 (667)
T PLN02712 200 RCKSFLEVFEREG------CKMVEMSCT 221 (667)
T ss_pred HHHHHHHHHHHcC------CEEEEeCHH
Confidence 4566779999999 456666553
No 102
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.30 E-value=8.4e-11 Score=120.88 Aligned_cols=145 Identities=10% Similarity=0.083 Sum_probs=110.2
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhC-CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEK-GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
.++|+|||+ |.||.++|+.|.+. |++|++||++.+ ...++++++.+ +|+||+|+|..
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~------------------~~~~~~~~v~~---aDlVilavPv~ 62 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP------------------GSLDPATLLQR---ADVLIFSAPIR 62 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc------------------ccCCHHHHhcC---CCEEEEeCCHH
Confidence 368999999 99999999999964 899999998511 13466777776 99999999995
Q ss_pred hhHHHHHHHHHhc---CCCCCEEEecCCCChhhHHHHHHHHHhcCccEecc-cCCCChh-hhhcCC-ccc-CCCCHHHHH
Q 010702 84 SPVDQTIAALSEH---MSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEE-GARHGP-SLM-PGGSFEAYN 156 (503)
Q Consensus 84 ~~v~~vl~~l~~~---l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsgg~~-~a~~G~-~i~-~gg~~~a~~ 156 (503)
.+.+++.++.+. ++++.+|+|.++++....+.. ...+..|++. |+.|.+. +...|. .++ ++...+..+
T Consensus 63 -~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~----~~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~~~~~~~~ 137 (370)
T PRK08818 63 -HTAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM----LASQAEVVGLHPMTAPPKSPTLKGRVMVVCEARLQHWSP 137 (370)
T ss_pred -HHHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH----HhcCCCEEeeCCCCCCCCCcccCCCeEEEeCCCchhHHH
Confidence 788999998875 789999999999885444433 2345679985 8888753 334555 444 455556678
Q ss_pred HHHHHHHHHhcccCCCCcEEEeCCcc
Q 010702 157 NIRDILQKVAAQVDDGPCVTYIGEGG 182 (503)
Q Consensus 157 ~v~~ll~~ig~~~~~~~~v~~~G~~G 182 (503)
.++.+++.+| ..++.+.+.-
T Consensus 138 ~v~~l~~~~G------a~v~~~~aee 157 (370)
T PRK08818 138 WVQSLCSALQ------AECVYATPEH 157 (370)
T ss_pred HHHHHHHHcC------CEEEEcCHHH
Confidence 8999999999 5677776643
No 103
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=99.29 E-value=3.2e-10 Score=114.45 Aligned_cols=254 Identities=16% Similarity=0.167 Sum_probs=158.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccC-CCC----eeeeCCHHHHHhccCCCcEEEEecC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREG-QLP----LTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g-~~~----i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
|||.|+|+|.||+-++..|+++|++|+++.|++. ++++.+.|..-- ..+ .....+..+ .+..+|+||++|+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~---~~~~~Dlviv~vK 76 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAE---ALGPADLVIVTVK 76 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChh---hcCCCCEEEEEec
Confidence 6899999999999999999999999999999876 788887653210 001 011111112 2234999999999
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc----CccEecccCCC--ChhhhhcCC---cccCCCCH
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSG--GEEGARHGP---SLMPGGSF 152 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pvsg--g~~~a~~G~---~i~~gg~~ 152 (503)
+. ++++++..+.+.+.+.+.|+-.-|+.... +.+.+.+... |+.+.++--.| ...-...|. ..+.|+.+
T Consensus 77 a~-q~~~al~~l~~~~~~~t~vl~lqNG~g~~-e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~ 154 (307)
T COG1893 77 AY-QLEEALPSLAPLLGPNTVVLFLQNGLGHE-EELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRD 154 (307)
T ss_pred cc-cHHHHHHHhhhcCCCCcEEEEEeCCCcHH-HHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCch
Confidence 96 89999999999999999999888886433 3444444433 22222222111 111111233 23445566
Q ss_pred HHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHH---------------------HHHHHHHHHHHHHHHHHHH
Q 010702 153 EAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHN---------------------GIEYGDMQLISEAYDVLKH 211 (503)
Q Consensus 153 ~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N---------------------~i~~~~~~~~~Ea~~l~~~ 211 (503)
+.++.+.++|+.-+. .+.+..+.-...+.|++-| .......+++.|+...+.+
T Consensus 155 ~~~~~i~~~~~~a~~------~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~ 228 (307)
T COG1893 155 ELVKALAELFKEAGL------EVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARA 228 (307)
T ss_pred HHHHHHHHHHHhCCC------CeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHh
Confidence 778888888877663 3333334444555555544 2344566788999999998
Q ss_pred hCCCC--HHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHH
Q 010702 212 VGGLS--NAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAA 288 (503)
Q Consensus 212 ~g~~~--~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~ 288 (503)
.| +. .+.+.+++........ ....++..+..+.+ .-.+|.|.. ..++.|+++|+++|+...
T Consensus 229 ~g-~~~~~~~~~~v~~~~~~~~~-~~~sSM~qDl~~gr-----~tEid~i~G---------~vv~~a~~~gi~~P~~~~ 291 (307)
T COG1893 229 EG-VELPEEVVERVLAVIRATDA-ENYSSMLQDLEKGR-----PTEIDAING---------AVVRLAKKHGLATPVNDT 291 (307)
T ss_pred cc-CCCCHHHHHHHHHHHHhccc-ccCchHHHHHHcCC-----cccHHHHhh---------HHHHHHHHhCCCCcHHHH
Confidence 87 54 4334444332222211 11223334444332 147788776 478999999999998875
No 104
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.26 E-value=6.3e-12 Score=109.79 Aligned_cols=109 Identities=17% Similarity=0.271 Sum_probs=74.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEE-EeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISV-YNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v-~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.+||+|||.|++|..|++.|.++||+|.. |+|+++..+++..... -....++.++++. +|++|++||++
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~------~~~~~~~~~~~~~---aDlv~iavpDd- 79 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIG------AGAILDLEEILRD---ADLVFIAVPDD- 79 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--T------T-----TTGGGCC----SEEEE-S-CC-
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccc------ccccccccccccc---CCEEEEEechH-
Confidence 46899999999999999999999999875 5899888777765421 1234566676665 99999999997
Q ss_pred hHHHHHHHHHhc--CCCCCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 85 PVDQTIAALSEH--MSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 85 ~v~~vl~~l~~~--l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
.+.++.++|... ..+|++|+++|.....+.. +-++++|..
T Consensus 80 aI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL---~p~~~~Ga~ 121 (127)
T PF10727_consen 80 AIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVL---APARERGAI 121 (127)
T ss_dssp HHHHHHHHHHCC--S-TT-EEEES-SS--GGGG---HHHHHTT-E
T ss_pred HHHHHHHHHHHhccCCCCcEEEECCCCChHHhh---hhHHHCCCe
Confidence 899999999987 7899999999998765544 334555653
No 105
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=99.23 E-value=5.2e-11 Score=110.81 Aligned_cols=195 Identities=13% Similarity=0.165 Sum_probs=133.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc-------ccC------C---C------CeeeeCCH
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH-------REG------Q---L------PLTGHYTP 63 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-------~~g------~---~------~i~~~~s~ 63 (503)
++.|+|||.|.||++||+..+..|++|+++|++.+.+.+..+... .++ . + ++..+++.
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tnv 90 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTNV 90 (298)
T ss_pred ccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCCH
Confidence 457999999999999999999999999999999987655432110 000 0 0 34455666
Q ss_pred HHHHhccCCCcEEEEecCCChhHHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHh----cCccEecc-cCCCCh
Q 010702 64 RDFVLSIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ----KGLLYLGM-GVSGGE 137 (503)
Q Consensus 64 ~e~~~~l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~----~gi~~i~~-pvsgg~ 137 (503)
.+++.+ +|+||.++-+...++.-+ ..+-...++..+++..++ +...+ ++...++. .|.||+.. ||+.-.
T Consensus 91 ~~~v~d---adliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTS-Sl~lt-~ia~~~~~~srf~GlHFfNPvPvMKLv 165 (298)
T KOG2304|consen 91 SDAVSD---ADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTS-SLSLT-DIASATQRPSRFAGLHFFNPVPVMKLV 165 (298)
T ss_pred HHhhhh---hHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeeccc-ceeHH-HHHhhccChhhhceeeccCCchhHHHh
Confidence 677766 899998887766666544 555555555555554443 33322 33333332 28899885 777655
Q ss_pred hhhhcCCcccCCCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 010702 138 EGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSN 217 (503)
Q Consensus 138 ~~a~~G~~i~~gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~ 217 (503)
+..+. .-.+++.+..+..+-+.+| +..+.+.+ -.|.. .|.+ .+-.+.|+.++.+++- .+.
T Consensus 166 EVir~-----~~TS~eTf~~l~~f~k~~g------KttVackD-tpGFI----VNRl---LiPyl~ea~r~yerGd-Ask 225 (298)
T KOG2304|consen 166 EVIRT-----DDTSDETFNALVDFGKAVG------KTTVACKD-TPGFI----VNRL---LIPYLMEAIRMYERGD-ASK 225 (298)
T ss_pred hhhcC-----CCCCHHHHHHHHHHHHHhC------CCceeecC-CCchh----hhHH---HHHHHHHHHHHHHhcC-CcH
Confidence 54443 2347899999999999999 77777755 44444 4554 5666799999999987 999
Q ss_pred HHHHHHHH
Q 010702 218 AELAEIFD 225 (503)
Q Consensus 218 ~~i~~~~~ 225 (503)
++|+..++
T Consensus 226 eDIDtaMk 233 (298)
T KOG2304|consen 226 EDIDTAMK 233 (298)
T ss_pred hhHHHHHh
Confidence 99999874
No 106
>PRK07574 formate dehydrogenase; Provisional
Probab=99.12 E-value=1.5e-09 Score=112.38 Aligned_cols=111 Identities=13% Similarity=0.147 Sum_probs=93.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+.+|++|...|++|.+|||++...+..... ++....+++++++. +|+|++++|...++
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~-------g~~~~~~l~ell~~---aDvV~l~lPlt~~T 262 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQEL-------GLTYHVSFDSLVSV---CDVVTIHCPLHPET 262 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhc-------CceecCCHHHHhhc---CCEEEEcCCCCHHH
Confidence 579999999999999999999999999999986432222221 24456789999887 99999999999999
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
+.++ ++.+..+++|.++|+++.+..-+...+.+.+++..+.
T Consensus 263 ~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~ 304 (385)
T PRK07574 263 EHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLA 304 (385)
T ss_pred HHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCcc
Confidence 9999 5788889999999999999999999999999876554
No 107
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=99.10 E-value=1.3e-09 Score=101.62 Aligned_cols=203 Identities=15% Similarity=0.237 Sum_probs=135.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH-----------HhhcccCCC-------CeeeeCCHHHHHh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETL-----------DRAHREGQL-------PLTGHYTPRDFVL 68 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~~~~~g~~-------~i~~~~s~~e~~~ 68 (503)
-||||+|.|.+|+++|..|+..||+|.+||..++.+.... +.|.-.|++ .+..++++.|+++
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~vk 83 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELVK 83 (313)
T ss_pred cceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHHh
Confidence 4899999999999999999999999999999998654332 222222222 3567889999998
Q ss_pred ccCCCcEEEEecCCChhHHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC--c
Q 010702 69 SIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP--S 145 (503)
Q Consensus 69 ~l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~--~ 145 (503)
. +=.|-.|+|++-.++.-+ .+|-..+ ...+|+..||+.+..+.- .+-+..+.-..+..|+-... .-| -
T Consensus 84 ~---Ai~iQEcvpE~L~lkk~ly~qlD~i~-d~~tIlaSSTSt~mpS~~-s~gL~~k~q~lvaHPvNPPy----fiPLvE 154 (313)
T KOG2305|consen 84 G---AIHIQECVPEDLNLKKQLYKQLDEIA-DPTTILASSTSTFMPSKF-SAGLINKEQCLVAHPVNPPY----FIPLVE 154 (313)
T ss_pred h---hhhHHhhchHhhHHHHHHHHHHHHhc-CCceEEeccccccChHHH-hhhhhhhhheeEecCCCCCc----ccchhe
Confidence 7 878889999987777665 4444444 445666666665544432 33333332234444543211 011 1
Q ss_pred cc--CCCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010702 146 LM--PGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEI 223 (503)
Q Consensus 146 i~--~gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~ 223 (503)
++ +=.+++.+++.+.+++.+| ..++....+--|.. .|.+.|++. +|.++|+..++ ++..+++.+
T Consensus 155 lVPaPwTsp~tVdrt~~lM~sig------q~pV~l~rei~Gf~----lnriq~Ail---ne~wrLvasGi-l~v~dvD~V 220 (313)
T KOG2305|consen 155 LVPAPWTSPDTVDRTRALMRSIG------QEPVTLKREILGFA----LNRIQYAIL---NETWRLVASGI-LNVNDVDAV 220 (313)
T ss_pred eccCCCCChhHHHHHHHHHHHhC------CCCcccccccccce----eccccHHHH---HHHHHHHHccC-cchhhHHHH
Confidence 22 2357889999999999999 44544444333443 467766665 99999999887 999999888
Q ss_pred HHHhccCCcchh
Q 010702 224 FDEWNKGELESF 235 (503)
Q Consensus 224 ~~~~~~g~~~s~ 235 (503)
+ +.|-+..|
T Consensus 221 m---S~GLG~RY 229 (313)
T KOG2305|consen 221 M---SAGLGPRY 229 (313)
T ss_pred H---hcCCCcch
Confidence 7 34544433
No 108
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=99.09 E-value=1e-09 Score=111.95 Aligned_cols=115 Identities=17% Similarity=0.192 Sum_probs=94.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+++|+.|...|++|.+||++++..... +....+++++++. +|+|++++|...++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~-----------~~~~~~l~ell~~---aDiVil~lP~t~~t 212 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF-----------LTYKDSVKEAIKD---ADIISLHVPANKES 212 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh-----------hhccCCHHHHHhc---CCEEEEeCCCcHHH
Confidence 589999999999999999999999999999998653321 1234588888887 99999999998777
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
..++ .++++.+++|.++|+++.+..-+...+.+.+.+..+.....-|.-
T Consensus 213 ~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~ 262 (330)
T PRK12480 213 YHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYE 262 (330)
T ss_pred HHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccC
Confidence 7777 678888999999999999999999999999987655444333443
No 109
>PLN03139 formate dehydrogenase; Provisional
Probab=99.08 E-value=2.6e-09 Score=110.54 Aligned_cols=111 Identities=11% Similarity=0.056 Sum_probs=93.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+.+|++|...|.+|.+||+++...+...+. ++....++++++.. +|+|++++|....+
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~-------g~~~~~~l~ell~~---sDvV~l~lPlt~~T 269 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKET-------GAKFEEDLDAMLPK---CDVVVINTPLTEKT 269 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhc-------CceecCCHHHHHhh---CCEEEEeCCCCHHH
Confidence 579999999999999999999999999999986433322222 23455689999987 99999999999999
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
+.++ .+++..+++|.++|+++.+..-+...+.+.+++..+.
T Consensus 270 ~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~ 311 (386)
T PLN03139 270 RGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIG 311 (386)
T ss_pred HHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCce
Confidence 9999 5788889999999999999999999999999876554
No 110
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=99.07 E-value=1e-08 Score=102.81 Aligned_cols=244 Identities=17% Similarity=0.172 Sum_probs=141.2
Q ss_pred HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhccc-C-CCCe-----eeeCCHHHHHhccCCCcEEEEecCCChhHHHH
Q 010702 17 MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE-G-QLPL-----TGHYTPRDFVLSIQRPRSVIILVKAGSPVDQT 89 (503)
Q Consensus 17 mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~-g-~~~i-----~~~~s~~e~~~~l~~~dvIil~vp~~~~v~~v 89 (503)
||+.+|..|+++|++|++++|+ +..+.+.+.|..- + ..+. ....++++ +..+|+||++|+.. +++++
T Consensus 2 iG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~----~~~~D~iiv~vKs~-~~~~~ 75 (293)
T TIGR00745 2 VGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE----LPPADLVIITVKAY-QTEEA 75 (293)
T ss_pred chHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh----cCCCCEEEEeccch-hHHHH
Confidence 7999999999999999999997 6666766554210 0 0011 11223333 23489999999996 78999
Q ss_pred HHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc----CccEecccCCCChhhhhcCC-cccCCC---CHHHHHHHHHH
Q 010702 90 IAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGEEGARHGP-SLMPGG---SFEAYNNIRDI 161 (503)
Q Consensus 90 l~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pvsgg~~~a~~G~-~i~~gg---~~~a~~~v~~l 161 (503)
++.+.+.+.++.+|+...|+.-. .+.+.+.+... |+.++++-..+...-...+. .+..|. ..+..+.+.++
T Consensus 76 l~~l~~~l~~~~~iv~~qNG~g~-~~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~~~~~~l~~~ 154 (293)
T TIGR00745 76 AALLLPLIGKNTKVLFLQNGLGH-EERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGENEAVEALAEL 154 (293)
T ss_pred HHHhHhhcCCCCEEEEccCCCCC-HHHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCchHHHHHHHHH
Confidence 99999999998999998887632 33344444322 12222222221101111122 233332 22445566667
Q ss_pred HHHHhcccCCCCcEEEeCCcchhHHHHhHHHH---------------------HHHHHHHHHHHHHHHHHHhCCCC--HH
Q 010702 162 LQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNG---------------------IEYGDMQLISEAYDVLKHVGGLS--NA 218 (503)
Q Consensus 162 l~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~---------------------i~~~~~~~~~Ea~~l~~~~g~~~--~~ 218 (503)
|+..+ ..+....+.-...+.|++.|. .......++.|++.++++.| ++ .+
T Consensus 155 l~~~~------~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G-~~~~~~ 227 (293)
T TIGR00745 155 LNEAG------IPAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEG-VDLPDD 227 (293)
T ss_pred HHhCC------CCCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCC-CCCCHH
Confidence 76655 223333333334444444332 33445677899999999988 75 34
Q ss_pred HHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHH
Q 010702 219 ELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (503)
Q Consensus 219 ~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~A 289 (503)
.+.+.+.........+ ..++..++.+.+. ..+|.+.. +.++.|+++|+|+|.....
T Consensus 228 ~~~~~~~~~~~~~~~~-~sSm~~D~~~gr~-----tEid~i~G---------~~v~~a~~~gv~~P~~~~l 283 (293)
T TIGR00745 228 EVEELVRAVIRMTAEN-TSSMLQDLLRGRR-----TEIDAING---------AVVRLAEKLGIDAPVNRTL 283 (293)
T ss_pred HHHHHHHHHHhcCCCC-CChHHHHHHcCCc-----chHHHhcc---------HHHHHHHHcCCCCChHHHH
Confidence 4444443332211111 1233345543321 36777665 5789999999999988753
No 111
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.03 E-value=7.8e-09 Score=102.06 Aligned_cols=143 Identities=17% Similarity=0.283 Sum_probs=99.0
Q ss_pred HHHHHHhCC--CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhHHHHHHHHHhcCC
Q 010702 21 LALNVAEKG--FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMS 98 (503)
Q Consensus 21 lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~ 98 (503)
+|+.|.++| ++|++||++++..+...+.|... ....+ .+.+.+ +|+||+|+|.. .+.+++.++.+.++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~-----~~~~~-~~~~~~---~DlvvlavP~~-~~~~~l~~~~~~~~ 70 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIID-----EASTD-IEAVED---ADLVVLAVPVS-AIEDVLEEIAPYLK 70 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSS-----EEESH-HHHGGC---CSEEEE-S-HH-HHHHHHHHHHCGS-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCee-----eccCC-HhHhcC---CCEEEEcCCHH-HHHHHHHHhhhhcC
Confidence 688899999 68999999999888776665432 23333 556666 99999999995 78999999999999
Q ss_pred CCCEEEecCCCChhhHHHHHHHHHhcCccEecc-cCCCCh--------hhhhcCC-cc-cCCC--CHHHHHHHHHHHHHH
Q 010702 99 PGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGE--------EGARHGP-SL-MPGG--SFEAYNNIRDILQKV 165 (503)
Q Consensus 99 ~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsgg~--------~~a~~G~-~i-~~gg--~~~a~~~v~~ll~~i 165 (503)
+|.+|+|.+++.......+.+.+. .++.|++. |+.|.+ .....|. .+ .++. +++.++.++.+++.+
T Consensus 71 ~~~iv~Dv~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~ 149 (258)
T PF02153_consen 71 PGAIVTDVGSVKAPIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEAL 149 (258)
T ss_dssp TTSEEEE--S-CHHHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHC
T ss_pred CCcEEEEeCCCCHHHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHC
Confidence 999999999998777766666555 57888885 777762 1222455 33 3333 568899999999999
Q ss_pred hcccCCCCcEEEeCC
Q 010702 166 AAQVDDGPCVTYIGE 180 (503)
Q Consensus 166 g~~~~~~~~v~~~G~ 180 (503)
| .+++.+.+
T Consensus 150 G------a~~~~~~~ 158 (258)
T PF02153_consen 150 G------ARVVEMDA 158 (258)
T ss_dssp T-------EEEE--H
T ss_pred C------CEEEEcCH
Confidence 9 56777754
No 112
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=99.02 E-value=4.6e-09 Score=99.65 Aligned_cols=137 Identities=20% Similarity=0.246 Sum_probs=93.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|+|+|+|.||..+|+.|.+.|++|.++|+++++.+++.+.. +....+ .+++... ++|+++.|...+...
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~------g~~~v~-~~~l~~~--~~Dv~vp~A~~~~I~ 99 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELF------GATVVA-PEEIYSV--DADVFAPCALGGVIN 99 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHc------CCEEEc-chhhccc--cCCEEEecccccccC
Confidence 5799999999999999999999999999999999888876642 123333 3444431 399998776554333
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec-ccC-CCChhhhhcCCcccCCCCH-HHHHHHHHH
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGV-SGGEEGARHGPSLMPGGSF-EAYNNIRDI 161 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pv-sgg~~~a~~G~~i~~gg~~-~a~~~v~~l 161 (503)
++.++ .+ +.++|++.+|....+ .+..+.|+++|+.|++ ... +||. ..+...|.++.+ ++.++++++
T Consensus 100 ~~~~~----~l-~~~~v~~~AN~~~~~-~~~~~~L~~~Gi~~~Pd~~~NaGGv---~~~~~e~~~~~~~~~~~~~~~~ 168 (200)
T cd01075 100 DDTIP----QL-KAKAIAGAANNQLAD-PRHGQMLHERGILYAPDYVVNAGGL---INVADELYGGNEARVLAKVEAI 168 (200)
T ss_pred HHHHH----Hc-CCCEEEECCcCccCC-HhHHHHHHHCCCEEeCceeeeCcCc---eeehhHHhCCcHHHHHHHHHHH
Confidence 33333 34 468999999987654 5778889999999987 555 4432 333345556553 344444333
No 113
>PRK13243 glyoxylate reductase; Reviewed
Probab=99.02 E-value=2.3e-09 Score=109.56 Aligned_cols=109 Identities=16% Similarity=0.181 Sum_probs=91.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+.+|+.|...|++|.+|||++.... .... +.. ..++++++++ +|+|++++|....+
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~-------~~~-~~~l~ell~~---aDiV~l~lP~t~~T 218 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-EKEL-------GAE-YRPLEELLRE---SDFVSLHVPLTKET 218 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-HHHc-------CCE-ecCHHHHHhh---CCEEEEeCCCChHH
Confidence 5899999999999999999999999999999875432 1111 122 4588998887 99999999998888
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
+.++ .+.+..+++|.++|+++.+...+...+.+.+.+..+.
T Consensus 219 ~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~ 260 (333)
T PRK13243 219 YHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIA 260 (333)
T ss_pred hhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeE
Confidence 8888 6788889999999999999999999999998876443
No 114
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.99 E-value=1.5e-08 Score=102.56 Aligned_cols=146 Identities=12% Similarity=0.101 Sum_probs=96.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCC-hhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRT-TSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~-~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|||||+|.||.++|++|.+.|++|.++++. +++.+.+.+.+ +.. .+..++++. +|+|++++|+..+
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~G-------v~~-~s~~ea~~~---ADiVvLaVpp~~~ 72 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDG-------FKV-GTVEEAIPQ---ADLIMNLLPDEVQ 72 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCC-------CEE-CCHHHHHhc---CCEEEEeCCcHhH
Confidence 58999999999999999999999998876554 44455554432 343 467788777 9999999998646
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEe-cccCCCChhh-----hhcCC-ccc-CC--CCHHHH
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGEEG-----ARHGP-SLM-PG--GSFEAY 155 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i-~~pvsgg~~~-----a~~G~-~i~-~g--g~~~a~ 155 (503)
...+++++.+.+.++. +|..+.+... ......+. .++..+ -+|=..+... ...|. +++ ++ -+.+..
T Consensus 73 ~~~v~~ei~~~l~~g~-iVs~aaG~~i--~~~~~~~~-~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~ 148 (314)
T TIGR00465 73 HEVYEAEIQPLLKEGK-TLGFSHGFNI--HFVQIVPP-KDVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAM 148 (314)
T ss_pred HHHHHHHHHhhCCCCc-EEEEeCCccH--hhccccCC-CCCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHH
Confidence 6767778988888776 4454444322 22222232 233333 3454433210 02444 443 33 366788
Q ss_pred HHHHHHHHHHhc
Q 010702 156 NNIRDILQKVAA 167 (503)
Q Consensus 156 ~~v~~ll~~ig~ 167 (503)
+.+..++..+|.
T Consensus 149 ~~~~~~~~~iG~ 160 (314)
T TIGR00465 149 AIALAYAKAIGG 160 (314)
T ss_pred HHHHHHHHHcCC
Confidence 999999999993
No 115
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=98.98 E-value=3.1e-09 Score=98.95 Aligned_cols=110 Identities=12% Similarity=0.230 Sum_probs=89.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.+|+.+|+.|..-|.+|.+|||+..........+ + ...+++++++. +|+|++++|.....
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~-------~-~~~~l~ell~~---aDiv~~~~plt~~T 105 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFG-------V-EYVSLDELLAQ---ADIVSLHLPLTPET 105 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTT-------E-EESSHHHHHHH----SEEEE-SSSSTTT
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhccccc-------c-eeeehhhhcch---hhhhhhhhcccccc
Confidence 5899999999999999999999999999999988655333322 2 46699999998 99999999987777
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
+.++ .+.+..+++|.++|+++.+..-+...+.+.+++..+.
T Consensus 106 ~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ 147 (178)
T PF02826_consen 106 RGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIA 147 (178)
T ss_dssp TTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEE
T ss_pred ceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCc
Confidence 7777 6778889999999999999888888898888876444
No 116
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.97 E-value=1.8e-09 Score=97.86 Aligned_cols=118 Identities=19% Similarity=0.170 Sum_probs=85.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.++|+|||+|.||..++..|++.| ++|.++||++++.+++.+...... ......+..+++++ +|+||+++|.+.
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~Dvvi~~~~~~~ 93 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG--IAIAYLDLEELLAE---ADLIINTTPVGM 93 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc--cceeecchhhcccc---CCEEEeCcCCCC
Confidence 368999999999999999999996 789999999998888766532100 00134466666555 999999999975
Q ss_pred h-HHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecc
Q 010702 85 P-VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (503)
Q Consensus 85 ~-v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~ 131 (503)
. ++.+... ...++++.+++|+++... .+ .+.+.+++.|++|++.
T Consensus 94 ~~~~~~~~~-~~~~~~~~~v~D~~~~~~-~~-~l~~~~~~~g~~~v~g 138 (155)
T cd01065 94 KPGDELPLP-PSLLKPGGVVYDVVYNPL-ET-PLLKEARALGAKTIDG 138 (155)
T ss_pred CCCCCCCCC-HHHcCCCCEEEEcCcCCC-CC-HHHHHHHHCCCceeCC
Confidence 3 2322211 123578999999998754 34 7778888888887764
No 117
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.96 E-value=3.3e-09 Score=107.30 Aligned_cols=111 Identities=17% Similarity=0.266 Sum_probs=90.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+.+|++|...|++|.+||++++....+. ......+++++++. +|+|++++|...++
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~---------~~~~~~~l~e~l~~---aDvvv~~lPlt~~T 204 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQ---------SFAGREELSAFLSQ---TRVLINLLPNTPET 204 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCce---------eecccccHHHHHhc---CCEEEECCCCCHHH
Confidence 5899999999999999999999999999999765421111 01123577888877 99999999999999
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEe
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (503)
+.++ .+.+..+++|.++|+++-+..-+...+.+.|.+..+...
T Consensus 205 ~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~ga 248 (312)
T PRK15469 205 VGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGA 248 (312)
T ss_pred HHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeE
Confidence 9998 467888999999999999998899999999988655433
No 118
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.96 E-value=5.2e-09 Score=107.00 Aligned_cols=108 Identities=14% Similarity=0.126 Sum_probs=88.5
Q ss_pred CcEEEEcccHHHHHHHHHHH-hCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVA-EKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~-~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|||||+|.||+.+|++|+ ..|.+|.+||+++.... ... +....+++++++. +|+|++++|....
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~---~~~-------~~~~~~l~ell~~---aDvIvl~lP~t~~ 213 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA---ATY-------VDYKDTIEEAVEG---ADIVTLHMPATKY 213 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhH---Hhh-------ccccCCHHHHHHh---CCEEEEeCCCCcc
Confidence 58999999999999999994 56889999999875421 111 2345689999887 9999999999877
Q ss_pred HHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 86 VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 86 v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
.+.++ .++.+.+++|.++|++|.+...++..+.+.+.+..+.
T Consensus 214 t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~ 256 (332)
T PRK08605 214 NHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIK 256 (332)
T ss_pred hhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCee
Confidence 77665 5677889999999999999999999999999876544
No 119
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.95 E-value=4.4e-09 Score=105.89 Aligned_cols=107 Identities=17% Similarity=0.218 Sum_probs=89.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+.+|+.+...|++|.+|||+... .+. .....+++++++. +|+|++++|...++
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~------~~~------~~~~~~l~ell~~---aDiv~~~lp~t~~T 187 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN------DGI------SSIYMEPEDIMKK---SDFVLISLPLTDET 187 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc------cCc------ccccCCHHHHHhh---CCEEEECCCCCchh
Confidence 57999999999999999998889999999998432 111 0124689999887 99999999999888
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccE
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (503)
+.++ .+.+..+++|.++|++|.+...+...+.+.+++..+..
T Consensus 188 ~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~ 230 (303)
T PRK06436 188 RGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKY 230 (303)
T ss_pred hcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceE
Confidence 8888 56778899999999999999999999999998764443
No 120
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.91 E-value=1.1e-08 Score=101.72 Aligned_cols=125 Identities=19% Similarity=0.185 Sum_probs=90.3
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhC--CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEE
Q 010702 1 MEASALSRIGLAGLAVMGQNLALNVAEK--GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI 77 (503)
Q Consensus 1 M~~~~~~~IgIIGlG~mG~~lA~~L~~~--G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIi 77 (503)
|++..++||||||+|.||..++.+|.+. +++|. +|||++++.+++.+.... ...+.+++++.++ +|+|+
T Consensus 1 ~~~m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~-----~~~~~~~eell~~---~D~Vv 72 (271)
T PRK13302 1 MSSRPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRR-----PPPVVPLDQLATH---ADIVV 72 (271)
T ss_pred CCCCCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCC-----CcccCCHHHHhcC---CCEEE
Confidence 5654457899999999999999999874 77765 889999988877654211 2356789999776 99999
Q ss_pred EecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccE-ecccCCCCh
Q 010702 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY-LGMGVSGGE 137 (503)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~-i~~pvsgg~ 137 (503)
+|+|.. ...++....+ ..|+.|+..+.......+++.+.+++.|..+ +..+..+|-
T Consensus 73 i~tp~~-~h~e~~~~aL---~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l~v~sGa~~g~ 129 (271)
T PRK13302 73 EAAPAS-VLRAIVEPVL---AAGKKAIVLSVGALLRNEDLIDLARQNGGQIIVPTGALLGL 129 (271)
T ss_pred ECCCcH-HHHHHHHHHH---HcCCcEEEecchhHHhHHHHHHHHHHcCCEEEEcchHHHhH
Confidence 999986 4455554443 4666666666655556777888888888765 544555443
No 121
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.87 E-value=1.3e-08 Score=101.64 Aligned_cols=191 Identities=13% Similarity=0.099 Sum_probs=114.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||.++|++|...|++|.+|+|.....+.....+ +.. .+++++++. +|+|++++|+. ..
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G-------~~v-~sl~Eaak~---ADVV~llLPd~-~t 84 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADG-------FEV-MSVSEAVRT---AQVVQMLLPDE-QQ 84 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcC-------CEE-CCHHHHHhc---CCEEEEeCCCh-HH
Confidence 5799999999999999999999999999987644433333322 333 489999988 99999999985 55
Q ss_pred HHHH-HHHHhcCCCCCEEEecCC--CChhhHHHHHHHHHhcCccEe-cccCCCChhhhh---c--CC-cccC---CCCHH
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGN--EWYLNTERRIHEASQKGLLYL-GMGVSGGEEGAR---H--GP-SLMP---GGSFE 153 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st--~~~~~t~~~~~~l~~~gi~~i-~~pvsgg~~~a~---~--G~-~i~~---gg~~~ 153 (503)
+.++ +++++.+++|.+++-.-. ..+. .....+++..+ -+|=..|....+ . |. ++++ -.+-.
T Consensus 85 ~~V~~~eil~~MK~GaiL~f~hgfni~~~------~i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l~av~qd~sg~ 158 (335)
T PRK13403 85 AHVYKAEVEENLREGQMLLFSHGFNIHFG------QINPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPALVAVHQDATGT 158 (335)
T ss_pred HHHHHHHHHhcCCCCCEEEECCCcceecC------ceeCCCCCeEEEECCCCCChHHHHHHHcCCCceeEEEEEECCCCc
Confidence 7787 579999999998765432 2221 11223344332 345444432211 2 22 3321 12333
Q ss_pred HHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHh-H-HHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 010702 154 AYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKM-V-HNGIEYGDMQLISEAYDVLKHVGGLSNAEL 220 (503)
Q Consensus 154 a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~-v-~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i 220 (503)
+.+.+......||+-- .-++...- -.-...-+ - +..+-.+..+++--.+..+.+.| .+|+..
T Consensus 159 a~~~ala~a~~iG~~r---agv~~ttf-~~EtetDlfgEq~vL~Gg~~~li~~gfe~lveaG-y~pe~A 222 (335)
T PRK13403 159 ALHVALAYAKGVGCTR---AGVIETTF-QEETETDLFGEQAVLCGGVTALVKAGFETLTEGG-YRPEIA 222 (335)
T ss_pred HHHHHHHHHHHcCCCc---eeEEecch-HHHHhhhhcccchhhHHHHHHHHHHHHHHHHHcC-CCHHHH
Confidence 6677777778887421 01111100 00000000 0 11234556667777777788888 888754
No 122
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=98.80 E-value=2.9e-08 Score=107.53 Aligned_cols=111 Identities=12% Similarity=0.117 Sum_probs=91.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+.+|++|...|++|.+||+.... +...+. ++...++++++++. +|+|++++|...++
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~-------g~~~~~~l~ell~~---aDvV~l~lPlt~~T 207 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAEQL-------GVELVDDLDELLAR---ADFITVHTPLTPET 207 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhc-------CCEEcCCHHHHHhh---CCEEEEccCCChhh
Confidence 57999999999999999999999999999986322 112221 23445689999887 99999999998888
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccE
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (503)
+.++ .+.+..+++|.++|+++.+..-+...+.+.+++..+..
T Consensus 208 ~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~g 250 (525)
T TIGR01327 208 RGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRA 250 (525)
T ss_pred ccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeE
Confidence 8888 56777899999999999999999999999998865543
No 123
>PLN02928 oxidoreductase family protein
Probab=98.79 E-value=6.9e-08 Score=99.24 Aligned_cols=114 Identities=15% Similarity=0.149 Sum_probs=89.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH--------HhhcccCCCCeeeeCCHHHHHhccCCCcEEEE
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETL--------DRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~--------~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil 78 (503)
++|||||+|.||+.+|+.|...|.+|.+|||+........ ...... .....++++++.. +|+|++
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~L~ell~~---aDiVvl 232 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDE----KGGHEDIYEFAGE---ADIVVL 232 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccc----cCcccCHHHHHhh---CCEEEE
Confidence 5899999999999999999999999999999743211110 000000 0134588888887 999999
Q ss_pred ecCCChhHHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 79 LVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 79 ~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
++|.....+.++ .+.+..+++|.++|+++.+..-+...+.+.+.+..+.
T Consensus 233 ~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~ 282 (347)
T PLN02928 233 CCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLG 282 (347)
T ss_pred CCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 999888888888 6778889999999999999888998999988876443
No 124
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.77 E-value=4.1e-08 Score=106.42 Aligned_cols=108 Identities=14% Similarity=0.187 Sum_probs=90.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+.+|++|...|++|.+||++... +..... ++... +++++++. +|+|++++|...++
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~-------g~~~~-~l~ell~~---aDiV~l~lP~t~~t 208 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAAQL-------GVELV-SLDELLAR---ADFITLHTPLTPET 208 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhc-------CCEEE-cHHHHHhh---CCEEEEccCCChHh
Confidence 57999999999999999999999999999986432 122222 23444 89999887 99999999998888
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCc
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi 126 (503)
+.++ .+.+..+++|.++|+++.+..-+...+.+.+++..+
T Consensus 209 ~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i 249 (526)
T PRK13581 209 RGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKV 249 (526)
T ss_pred hcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCe
Confidence 9888 678888999999999999999999999999887544
No 125
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=98.76 E-value=4.5e-08 Score=99.32 Aligned_cols=109 Identities=13% Similarity=0.245 Sum_probs=90.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.+|+.+|..+..-|++|.+||+...+..... . ......+++++++. +|+|.+.+|-...+
T Consensus 143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~-~-------~~~~~~~Ld~lL~~---sDiv~lh~PlT~eT 211 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGV-D-------GVVGVDSLDELLAE---ADILTLHLPLTPET 211 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhcc-c-------cceecccHHHHHhh---CCEEEEcCCCCcch
Confidence 5899999999999999999999999999999433211111 1 24556889999998 99999999998889
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCc
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi 126 (503)
+.++ .+.+..+++|.++|+++-+..-+...+.+.+++..+
T Consensus 212 ~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i 252 (324)
T COG0111 212 RGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKI 252 (324)
T ss_pred hcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCc
Confidence 9888 567778999999999999999899999998887533
No 126
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.76 E-value=5.1e-08 Score=87.65 Aligned_cols=89 Identities=17% Similarity=0.264 Sum_probs=65.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh-HHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS-KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|+|||.|..|.+.|+||.+.|++|.+..|..+ ..+...+.| +. ..+.+|+++. +|+|++.+|+. .
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~G-------f~-v~~~~eAv~~---aDvV~~L~PD~-~ 72 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADG-------FE-VMSVAEAVKK---ADVVMLLLPDE-V 72 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT--------E-CCEHHHHHHC----SEEEE-S-HH-H
T ss_pred CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCC-------Ce-eccHHHHHhh---CCEEEEeCChH-H
Confidence 5899999999999999999999999999988877 455555443 33 4588898887 99999999984 5
Q ss_pred HHHHH-HHHHhcCCCCCEEEecC
Q 010702 86 VDQTI-AALSEHMSPGDCIIDGG 107 (503)
Q Consensus 86 v~~vl-~~l~~~l~~g~iIId~s 107 (503)
..+++ +++.|.|++|++++-..
T Consensus 73 q~~vy~~~I~p~l~~G~~L~fah 95 (165)
T PF07991_consen 73 QPEVYEEEIAPNLKPGATLVFAH 95 (165)
T ss_dssp HHHHHHHHHHHHS-TT-EEEESS
T ss_pred HHHHHHHHHHhhCCCCCEEEeCC
Confidence 66777 89999999999887654
No 127
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=98.75 E-value=1e-07 Score=94.02 Aligned_cols=149 Identities=14% Similarity=0.121 Sum_probs=108.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
.+|||||.|.||+-+|.-|.++||.|...||+. .+.+++.. +...++.+.++++. .+|+|++|+.. ..+
T Consensus 53 l~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~y------g~~~ft~lhdlcer--hpDvvLlctsi-lsi 121 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKY------GSAKFTLLHDLCER--HPDVVLLCTSI-LSI 121 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHh------cccccccHHHHHhc--CCCEEEEEehh-hhH
Confidence 369999999999999999999999999999986 44444432 23457788888875 59999999987 478
Q ss_pred HHHHHHHHhc-CCCCCEEEecCCCChhhHHHHHHHHHhcCccEecc-cCCCChhhhhcCC--cccC----CC----CHHH
Q 010702 87 DQTIAALSEH-MSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEEGARHGP--SLMP----GG----SFEA 154 (503)
Q Consensus 87 ~~vl~~l~~~-l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsgg~~~a~~G~--~i~~----gg----~~~a 154 (503)
+.++...-+. ++.|++++|..+..........+.+.+ .+..+-+ |+.|....-..+. .++. .| .++.
T Consensus 122 ekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPk-dfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~er 200 (480)
T KOG2380|consen 122 EKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPK-DFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPER 200 (480)
T ss_pred HHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCcc-ccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHH
Confidence 8888777665 889999999998886666666666654 4666654 5555442322222 2221 23 3678
Q ss_pred HHHHHHHHHHHhc
Q 010702 155 YNNIRDILQKVAA 167 (503)
Q Consensus 155 ~~~v~~ll~~ig~ 167 (503)
++.+.++|...+.
T Consensus 201 cE~fleIf~cegc 213 (480)
T KOG2380|consen 201 CEFFLEIFACEGC 213 (480)
T ss_pred HHHHHHHHHhcCC
Confidence 8888889988883
No 128
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=98.72 E-value=4.5e-08 Score=101.32 Aligned_cols=115 Identities=12% Similarity=0.154 Sum_probs=89.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh--
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS-- 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~-- 84 (503)
++|||||+|.||+.+|+.+...|++|.+||+..... .+ .....+++++++. ||+|++++|-..
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~-----~~-------~~~~~~l~ell~~---aDiV~lh~Plt~~g 181 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA-----EG-------DGDFVSLERILEE---CDVISLHTPLTKEG 181 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc-----cc-------CccccCHHHHHhh---CCEEEEeCcCCCCc
Confidence 579999999999999999999999999999854321 11 1234689999887 999999999754
Q ss_pred --hHHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCC
Q 010702 85 --PVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (503)
Q Consensus 85 --~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg 136 (503)
....++ ++.+..+++|.++|+++.+..-+...+.+.+.+..+.....-|.-.
T Consensus 182 ~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~ 236 (381)
T PRK00257 182 EHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEG 236 (381)
T ss_pred cccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCC
Confidence 356666 5677889999999999999999999999988775443333334433
No 129
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=98.71 E-value=8.3e-08 Score=97.23 Aligned_cols=106 Identities=13% Similarity=0.215 Sum_probs=89.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.+|+.+|+.+..-|.+|.+|||..... .. .+ ...+++++++. +|+|++++|-....
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~----~~-------~~-~~~~l~ell~~---sDvv~lh~Plt~~T 210 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK----NE-------EY-ERVSLEELLKT---SDIISIHAPLNEKT 210 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc----cc-------Cc-eeecHHHHhhc---CCEEEEeCCCCchh
Confidence 579999999999999999999999999999964321 11 12 24589999887 99999999988888
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
+..+ ++.+..+++|.++|+++.+..-+...+.+.|++..+.
T Consensus 211 ~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~ 252 (311)
T PRK08410 211 KNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY 252 (311)
T ss_pred hcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE
Confidence 8888 6777889999999999999999999999999876554
No 130
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=98.70 E-value=1.5e-07 Score=95.52 Aligned_cols=116 Identities=16% Similarity=0.233 Sum_probs=93.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
+++||||+|.+|+.+|+++..-|.+|..|||++. .+..+.. +.... ++++++++ +|+|.+.+|...+.
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~--~~~~~~~------~~~y~-~l~ell~~---sDii~l~~Plt~~T 214 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN--PEAEKEL------GARYV-DLDELLAE---SDIISLHCPLTPET 214 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC--hHHHhhc------Cceec-cHHHHHHh---CCEEEEeCCCChHH
Confidence 6899999999999999999977889999999975 2222221 12333 49999988 99999999999999
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCC
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVS 134 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvs 134 (503)
...+ .+.+..+++|.++|+++-+..-+...+.+.+++..+.-.+.-|.
T Consensus 215 ~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~ 263 (324)
T COG1052 215 RHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVF 263 (324)
T ss_pred hhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeec
Confidence 9988 67788899999999999999999999999998865543333333
No 131
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.68 E-value=1.1e-07 Score=99.79 Aligned_cols=108 Identities=14% Similarity=0.188 Sum_probs=91.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.+|+.+|+.+..-|.+|.+||+++... .+ .+....+++++++. ||+|++.+|.....
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~-----~~------~~~~~~~l~ell~~---sDiVslh~Plt~~T 217 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP-----LG------NARQVGSLEELLAQ---SDVVSLHVPETPST 217 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc-----cC------CceecCCHHHHHhh---CCEEEEcCCCChHH
Confidence 579999999999999999999999999999874311 11 13445689999988 99999999998888
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccE
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (503)
+.++ .+.+..+++|.++|+++.+..-+...+.+.+++..+..
T Consensus 218 ~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~g 260 (409)
T PRK11790 218 KNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAG 260 (409)
T ss_pred hhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceE
Confidence 8888 67788899999999999999999999999998765543
No 132
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=98.67 E-value=3.6e-07 Score=93.02 Aligned_cols=108 Identities=15% Similarity=0.167 Sum_probs=88.5
Q ss_pred CcEEEEcccHHHHHHHHHHH-hCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVA-EKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~-~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|||||+|.+|+.+|+.+. .-|.+|..||+...... .... ++. ..+++++++. ||+|++++|-...
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~-~~~~-------~~~-~~~l~ell~~---sDvv~lh~plt~~ 213 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEA-EERF-------NAR-YCDLDTLLQE---SDFVCIILPLTDE 213 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhh-HHhc-------CcE-ecCHHHHHHh---CCEEEEeCCCChH
Confidence 57999999999999999997 77889999998743211 1111 123 3589999887 9999999999888
Q ss_pred HHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCc
Q 010702 86 VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126 (503)
Q Consensus 86 v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi 126 (503)
.+.++ .+.+..+++|.++|+++-+..-+...+.+.+++..+
T Consensus 214 T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i 255 (323)
T PRK15409 214 THHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEI 255 (323)
T ss_pred HhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCe
Confidence 88888 577888999999999999999899999999887644
No 133
>PRK06487 glycerate dehydrogenase; Provisional
Probab=98.65 E-value=3.1e-07 Score=93.35 Aligned_cols=104 Identities=13% Similarity=0.122 Sum_probs=87.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.+|+.+|+.+..-|.+|.+|||.... .. . ...+++++++. +|+|++++|-....
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~------~~-------~-~~~~l~ell~~---sDiv~l~lPlt~~T 211 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP------AR-------P-DRLPLDELLPQ---VDALTLHCPLTEHT 211 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc------cc-------c-cccCHHHHHHh---CCEEEECCCCChHH
Confidence 57999999999999999999999999999986321 00 1 13478999887 99999999988888
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
+..+ .+.+..+++|.++|+++-+..-+...+.+.+++..+.
T Consensus 212 ~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~ 253 (317)
T PRK06487 212 RHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLG 253 (317)
T ss_pred hcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 8888 6778889999999999999988999999999876443
No 134
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.65 E-value=2.7e-07 Score=91.45 Aligned_cols=119 Identities=14% Similarity=0.145 Sum_probs=82.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC--CCc-EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEK--GFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~--G~~-V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
||||||||+|.||..++..+.+. +++ +.++|+++++.+.+.+.. +...+.++++++.+ +|+|++|+|+
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~------~~~~~~~~~ell~~---~DvVvi~a~~ 71 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKT------GAKACLSIDELVED---VDLVVECASV 71 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhc------CCeeECCHHHHhcC---CCEEEEcCCh
Confidence 36999999999999999999876 355 558999999888876632 24567889998755 9999999987
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCC---ChhhHHHHHHHHHhcCcc-EecccCCCCh
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNE---WYLNTERRIHEASQKGLL-YLGMGVSGGE 137 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~---~~~~t~~~~~~l~~~gi~-~i~~pvsgg~ 137 (503)
. ...+.+..++. .|.-++..|.. .....+++.+.+++.|.. |+..+..+|.
T Consensus 72 ~-~~~~~~~~al~---~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~sga~~g~ 126 (265)
T PRK13304 72 N-AVEEVVPKSLE---NGKDVIIMSVGALADKELFLKLYKLAKENNCKIYLPSGAIVGL 126 (265)
T ss_pred H-HHHHHHHHHHH---cCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEEeCchHHhH
Confidence 4 55666555544 45545555552 334455666666776754 4444444443
No 135
>PRK06932 glycerate dehydrogenase; Provisional
Probab=98.65 E-value=2.4e-07 Score=93.95 Aligned_cols=105 Identities=12% Similarity=0.166 Sum_probs=88.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.+|+.+|+.+..-|.+|..||+.... .. . ....+++++++. +|+|++++|-....
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~~-~----------~~~~~l~ell~~---sDiv~l~~Plt~~T 211 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--VC-R----------EGYTPFEEVLKQ---ADIVTLHCPLTETT 211 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--cc-c----------cccCCHHHHHHh---CCEEEEcCCCChHH
Confidence 58999999999999999999999999999986421 10 0 124588999887 99999999988888
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
+..+ .+.+..+++|.++|+++-+..-+...+.+.+++..+.
T Consensus 212 ~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~ 253 (314)
T PRK06932 212 QNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIA 253 (314)
T ss_pred hcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCcc
Confidence 8888 6777889999999999999988999999999876554
No 136
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.65 E-value=3.2e-07 Score=91.82 Aligned_cols=111 Identities=16% Similarity=0.066 Sum_probs=79.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|+|||+|.||..+|+.|...|.+|++++|++++.+.+.+.+.. .....++.+++.+ +|+||.++|.. .+
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~-----~~~~~~l~~~l~~---aDiVint~P~~-ii 222 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLI-----PFPLNKLEEKVAE---IDIVINTIPAL-VL 222 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCe-----eecHHHHHHHhcc---CCEEEECCChH-Hh
Confidence 579999999999999999999999999999999876665543311 1112234455554 99999999874 11
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEeccc
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (503)
. .+.++.++++.+|||.++..-.+.. +..++.|++.+-+|
T Consensus 223 ~---~~~l~~~k~~aliIDlas~Pg~tdf---~~Ak~~G~~a~~~~ 262 (287)
T TIGR02853 223 T---ADVLSKLPKHAVIIDLASKPGGTDF---EYAKKRGIKALLAP 262 (287)
T ss_pred C---HHHHhcCCCCeEEEEeCcCCCCCCH---HHHHHCCCEEEEeC
Confidence 1 4456678899999999886543322 45567787776554
No 137
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.62 E-value=3e-06 Score=80.78 Aligned_cols=201 Identities=14% Similarity=0.153 Sum_probs=133.7
Q ss_pred CCcEEEEcccHH--------------------HHHHHHHHHhCCCcEEEEeCChhHHHHH-HHhhcccCCCCeeeeCCHH
Q 010702 6 LSRIGLAGLAVM--------------------GQNLALNVAEKGFPISVYNRTTSKVDET-LDRAHREGQLPLTGHYTPR 64 (503)
Q Consensus 6 ~~~IgIIGlG~m--------------------G~~lA~~L~~~G~~V~v~dr~~~~~~~l-~~~~~~~g~~~i~~~~s~~ 64 (503)
+|||+|.|+|+- |..||..++++||+|.+.+.+.+-.+.- .+.-... +++..++-.
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedA---GV~vv~dD~ 77 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDA---GVEVVSDDA 77 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhc---CcEEecCch
Confidence 468999999864 6779999999999999998776543221 2221112 367788888
Q ss_pred HHHhccCCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHH-HHHHHhc----CccE-ecccCCCChh
Q 010702 65 DFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERR-IHEASQK----GLLY-LGMGVSGGEE 138 (503)
Q Consensus 65 e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~-~~~l~~~----gi~~-i~~pvsgg~~ 138 (503)
+.++. +++.++.+|-+...-.+..+|+++++.|.+|.++.|++|...... ...|+-+ |+.- ..++|-|.+.
T Consensus 78 eaa~~---~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~ 154 (340)
T COG4007 78 EAAEH---GEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQ 154 (340)
T ss_pred hhhhc---ceEEEEecccchhhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCC
Confidence 88887 999999999998888899999999999999999999887655432 2333221 4322 2234444332
Q ss_pred hhhcCCcccCC--------CCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 010702 139 GARHGPSLMPG--------GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLK 210 (503)
Q Consensus 139 ~a~~G~~i~~g--------g~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~ 210 (503)
+|-.++.| .+++..+++.++.++.| +.++.+...-.....-| .-.+....++.+.+-|....
T Consensus 155 ---h~~yviagr~t~g~elATeEQi~r~velaes~G------k~~yv~padv~s~VaDm-g~lvtav~l~gvldyy~Vg~ 224 (340)
T COG4007 155 ---HGHYVIAGRSTEGKELATEEQIERCVELAESTG------KEVYVLPADVVSAVADM-GVLVTAVALSGVLDYYYVGT 224 (340)
T ss_pred ---CceEEEeccCCCceeeccHHHHHHHHHHHHhcC------CceEecCHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHH
Confidence 22222222 25777899999999999 66666643222222222 23344556778888888888
Q ss_pred HhCCCCHHHHHH
Q 010702 211 HVGGLSNAELAE 222 (503)
Q Consensus 211 ~~g~~~~~~i~~ 222 (503)
+.-|.+.+-|.+
T Consensus 225 qIi~AP~eMIek 236 (340)
T COG4007 225 QIIGAPKEMIEK 236 (340)
T ss_pred HHhCCcHHHHHH
Confidence 655466554443
No 138
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=98.62 E-value=7.7e-06 Score=80.13 Aligned_cols=171 Identities=13% Similarity=0.110 Sum_probs=112.0
Q ss_pred CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCC
Q 010702 29 GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 29 G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st 108 (503)
.++|.+|+|++++.+.+.+.. ++....+..++++. +|+||+||++ ..+++++.++.+.+.++++||+..+
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~~------g~~~~~~~~e~~~~---aDiIiLaVkP-~~i~~vl~~l~~~~~~~~~ivS~~a 78 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKEL------GIVASSDAQEAVKE---ADVVFLAVKP-QDLEEVLSELKSEKGKDKLLISIAA 78 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHHc------CcEEeCChHHHHhh---CCEEEEEeCH-HHHHHHHHHHhhhccCCCEEEEecC
Confidence 368999999999988876642 24567888888887 9999999995 6899999999887777889999988
Q ss_pred CChhhHHHHHHHHHhcCccEec-ccCCCChhhhhcCC-cccCC--CCHHHHHHHHHHHHHHhcccCCCCcEEEeCCc--c
Q 010702 109 EWYLNTERRIHEASQKGLLYLG-MGVSGGEEGARHGP-SLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEG--G 182 (503)
Q Consensus 109 ~~~~~t~~~~~~l~~~gi~~i~-~pvsgg~~~a~~G~-~i~~g--g~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~--G 182 (503)
+.+.. .+.+.+.. +...+- +|-. +.....|. .+..+ -+++..+.++.+|+.+| .++++.+. -
T Consensus 79 gi~~~--~l~~~~~~-~~~ivR~mPn~--~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G-------~~~~v~E~~~~ 146 (245)
T TIGR00112 79 GVTLE--KLSQLLGG-TRRVVRVMPNT--PAKVGAGVTAIAANANVSEEDRALVLALFKAVG-------EVVELPEALMD 146 (245)
T ss_pred CCCHH--HHHHHcCC-CCeEEEECCCh--HHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCC-------CEEEECHHHcc
Confidence 87543 34444432 112222 3322 23344566 33343 25566788999999999 34445431 1
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010702 183 SGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFD 225 (503)
Q Consensus 183 ~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~ 225 (503)
....+--.-.++.+.++..+.++ +.+.| +++++..++..
T Consensus 147 ~~talsgsgPA~~~~~~~al~~~---~v~~G-l~~~~A~~lv~ 185 (245)
T TIGR00112 147 AVTALSGSGPAYVFLFIEALADA---GVKQG-LPRELALELAA 185 (245)
T ss_pred hHHhhccCcHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 11111112334445555555555 45667 99999888864
No 139
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=98.61 E-value=1.6e-07 Score=97.04 Aligned_cols=105 Identities=10% Similarity=0.160 Sum_probs=84.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh-
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP- 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~- 85 (503)
++|||||+|.||+.+|+.|...|.+|.+||+.... .+. .....++++++++ ||+|++.+|-...
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~------~~~------~~~~~~L~ell~~---sDiI~lh~PLt~~g 181 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRAD------RGD------EGDFRSLDELVQE---ADILTFHTPLFKDG 181 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccc------ccc------ccccCCHHHHHhh---CCEEEEeCCCCCCc
Confidence 58999999999999999999999999999975321 110 0124689999887 9999999986542
Q ss_pred ---HHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCc
Q 010702 86 ---VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126 (503)
Q Consensus 86 ---v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi 126 (503)
....+ ++.+..+++|.++|+++-+..-+...+.+.+++..+
T Consensus 182 ~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~ 226 (378)
T PRK15438 182 PYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQK 226 (378)
T ss_pred ccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCC
Confidence 55666 577788999999999999999999999888877544
No 140
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.50 E-value=3.4e-07 Score=93.03 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=83.9
Q ss_pred CcEEEEcccHHHHHHHHHHHh--CCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAE--KGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~--~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.+|+|||+|.||..++..+.. ...+|.+|||++++.+++.+.....+ ..+..+.++++++.+ +|+|+.+++...
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g-~~~~~~~~~~~av~~---aDIVi~aT~s~~ 201 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQG-FDAEVVTDLEAAVRQ---ADIISCATLSTE 201 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcC-CceEEeCCHHHHHhc---CCEEEEeeCCCC
Confidence 579999999999999986554 44789999999999999887632110 125677899988877 999988888753
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecc
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~ 131 (503)
.++.. ..+++|. +|++.++.+...+++...+.+++..|+|-
T Consensus 202 ---pvl~~--~~l~~g~-~i~~ig~~~~~~~El~~~~~~~a~~~vD~ 242 (314)
T PRK06141 202 ---PLVRG--EWLKPGT-HLDLVGNFTPDMRECDDEAIRRASVYVDT 242 (314)
T ss_pred ---CEecH--HHcCCCC-EEEeeCCCCcccccCCHHHHhcCcEEEcC
Confidence 33321 3567887 66777676667777766666666667774
No 141
>PLN02306 hydroxypyruvate reductase
Probab=98.50 E-value=1.1e-06 Score=91.46 Aligned_cols=127 Identities=9% Similarity=0.139 Sum_probs=92.6
Q ss_pred CcEEEEcccHHHHHHHHHHH-hCCCcEEEEeCChhH-HHHHHHh-hc---ccC--CCCeeeeCCHHHHHhccCCCcEEEE
Q 010702 7 SRIGLAGLAVMGQNLALNVA-EKGFPISVYNRTTSK-VDETLDR-AH---REG--QLPLTGHYTPRDFVLSIQRPRSVII 78 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~-~~G~~V~v~dr~~~~-~~~l~~~-~~---~~g--~~~i~~~~s~~e~~~~l~~~dvIil 78 (503)
++|||||+|.+|+.+|+.|. .-|.+|.+||+.+.. .+.+... +. ..+ ...+....+++++++. +|+|++
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~---sDiV~l 242 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLRE---ADVISL 242 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhh---CCEEEE
Confidence 57999999999999999986 779999999988642 1111111 00 000 0011223588999887 999999
Q ss_pred ecCCChhHHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCC
Q 010702 79 LVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (503)
Q Consensus 79 ~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg 136 (503)
++|-....+.++ .+.+..+++|.++|+++-+..-+...+.+.+++..+.....-|+-.
T Consensus 243 h~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~ 301 (386)
T PLN02306 243 HPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFED 301 (386)
T ss_pred eCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCC
Confidence 999888888888 6777889999999999999888888898988875444333334433
No 142
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.47 E-value=3.8e-07 Score=90.88 Aligned_cols=74 Identities=16% Similarity=0.275 Sum_probs=62.4
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|+|||.| .||.+||.+|.++|++|++|++.. .++++++++ +|+||++++.+..
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t---------------------~~l~e~~~~---ADIVIsavg~~~~ 215 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS---------------------TDAKALCRQ---ADIVVAAVGRPRL 215 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC---------------------CCHHHHHhc---CCEEEEecCChhc
Confidence 579999996 999999999999999999998653 256777777 9999999998766
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
++.+. +++|.+|||+|...
T Consensus 216 v~~~~------ik~GaiVIDvgin~ 234 (301)
T PRK14194 216 IDADW------LKPGAVVIDVGINR 234 (301)
T ss_pred ccHhh------ccCCcEEEEecccc
Confidence 66544 78999999998654
No 143
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=98.46 E-value=1.3e-06 Score=87.98 Aligned_cols=108 Identities=14% Similarity=0.216 Sum_probs=90.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
-++|||+|+|.+|+.+|++|..-|..+.-++|++...+...+... -..+.++++.+ +|+|++++|..+.
T Consensus 162 gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~--------~~~d~~~~~~~---sD~ivv~~pLt~~ 230 (336)
T KOG0069|consen 162 GKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYA--------EFVDIEELLAN---SDVIVVNCPLTKE 230 (336)
T ss_pred CCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcc--------cccCHHHHHhh---CCEEEEecCCCHH
Confidence 468999999999999999999998445555777776666554432 15688888888 9999999999999
Q ss_pred HHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc
Q 010702 86 VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124 (503)
Q Consensus 86 v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~ 124 (503)
+..++ .++...+.+|.+||+++-+..-+-+.+.+.+++-
T Consensus 231 T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG 270 (336)
T KOG0069|consen 231 TRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSG 270 (336)
T ss_pred HHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcC
Confidence 99999 6788999999999999999988888888888764
No 144
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=98.43 E-value=1.8e-05 Score=77.55 Aligned_cols=210 Identities=13% Similarity=0.112 Sum_probs=142.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHhhc---ccC---------CCCeeeeCCHHHHHhccC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDETLDRAH---REG---------QLPLTGHYTPRDFVLSIQ 71 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~---~~g---------~~~i~~~~s~~e~~~~l~ 71 (503)
|+||+-||+|.+|.+-..-++-+. .+|++.|.+..++.+...... ..| +.++-..++.+..+.+
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~e-- 78 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKE-- 78 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhh--
Confidence 468999999999998776666554 468899999888755432110 000 0146677788888887
Q ss_pred CCcEEEEecCCCh--------------hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHH--hcCccE--ecccC
Q 010702 72 RPRSVIILVKAGS--------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEAS--QKGLLY--LGMGV 133 (503)
Q Consensus 72 ~~dvIil~vp~~~--------------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~--~~gi~~--i~~pv 133 (503)
+|+|+++|.++. -++++...+.......+||+.-||+.....+.+...+. .+|++| +.-|-
T Consensus 79 -adlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~fqilsnpe 157 (481)
T KOG2666|consen 79 -ADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKFQILSNPE 157 (481)
T ss_pred -cceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeeccccchHHHHHHHHHhcCCCCceeEeccChH
Confidence 999999985432 24455556666666789999999999999988888775 346655 33332
Q ss_pred CCCh---hhhhcCC-cccCCCC--HHHHHHHHH---HHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHH
Q 010702 134 SGGE---EGARHGP-SLMPGGS--FEAYNNIRD---ILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISE 204 (503)
Q Consensus 134 sgg~---~~a~~G~-~i~~gg~--~~a~~~v~~---ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~E 204 (503)
+-.+ -.-...| .++.||. ++-++.++. +++..-. ..-+.....=++...|++.|++.+--+..++-
T Consensus 158 flaegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp-----~~~iittntwsselsklaanaflaqrissins 232 (481)
T KOG2666|consen 158 FLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVP-----REQIITTNTWSSELSKLAANAFLAQRISSINS 232 (481)
T ss_pred HhcccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCc-----ccceeeccccHHHHHHHHHHHHHHHHHhhhHH
Confidence 2111 1112223 5677874 454554444 4433331 11223334577889999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHH
Q 010702 205 AYDVLKHVGGLSNAELAEIF 224 (503)
Q Consensus 205 a~~l~~~~g~~~~~~i~~~~ 224 (503)
.-++++..| .+..++..++
T Consensus 233 ~salceatg-adv~eva~av 251 (481)
T KOG2666|consen 233 MSALCEATG-ADVSEVAYAV 251 (481)
T ss_pred HHHHHHhcC-CCHHHHHHHh
Confidence 999999999 9988887775
No 145
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=98.41 E-value=1.1e-06 Score=79.32 Aligned_cols=98 Identities=18% Similarity=0.217 Sum_probs=72.8
Q ss_pred EEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccC-CC---Cee---eeCCHHHHHhccCCCcEEEEecC
Q 010702 9 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREG-QL---PLT---GHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 9 IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g-~~---~i~---~~~s~~e~~~~l~~~dvIil~vp 81 (503)
|.|+|+|.||.-+|..|++.|++|+++.|++ ..+.+.+.+..-. .. .+. ...+..+... .+|+||+|++
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~D~viv~vK 76 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAG---PYDLVIVAVK 76 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHS---TESEEEE-SS
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccC---CCcEEEEEec
Confidence 7899999999999999999999999999998 7777766543100 00 011 1112212233 3899999999
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCCh
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWY 111 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~ 111 (503)
.. +++++++.+.+.+.+++.|+-..|+..
T Consensus 77 a~-~~~~~l~~l~~~~~~~t~iv~~qNG~g 105 (151)
T PF02558_consen 77 AY-QLEQALQSLKPYLDPNTTIVSLQNGMG 105 (151)
T ss_dssp GG-GHHHHHHHHCTGEETTEEEEEESSSSS
T ss_pred cc-chHHHHHHHhhccCCCcEEEEEeCCCC
Confidence 95 789999999999999888888888863
No 146
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.37 E-value=9e-06 Score=70.10 Aligned_cols=112 Identities=14% Similarity=0.217 Sum_probs=81.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK--GFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~--G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
+||||||+|.+|......+.+. +++| .++|+++++.+.+.+.. ++..++|.+++++. ++.|+|++++|+.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~------~~~~~~~~~~ll~~-~~~D~V~I~tp~~ 73 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKY------GIPVYTDLEELLAD-EDVDAVIIATPPS 73 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT------TSEEESSHHHHHHH-TTESEEEEESSGG
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHh------cccchhHHHHHHHh-hcCCEEEEecCCc
Confidence 3799999999999999888877 4554 47899999988876653 35689999999984 2489999999997
Q ss_pred hhHHHHHHHHHhcCCCCCEEEec-CCCChhhHHHHHHHHHhcCccE
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDG-GNEWYLNTERRIHEASQKGLLY 128 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~-st~~~~~t~~~~~~l~~~gi~~ 128 (503)
...+-+...+.... .++++- -.....+.+++.+..+++|..+
T Consensus 74 ~h~~~~~~~l~~g~---~v~~EKP~~~~~~~~~~l~~~a~~~~~~~ 116 (120)
T PF01408_consen 74 SHAEIAKKALEAGK---HVLVEKPLALTLEEAEELVEAAKEKGVKV 116 (120)
T ss_dssp GHHHHHHHHHHTTS---EEEEESSSSSSHHHHHHHHHHHHHHTSCE
T ss_pred chHHHHHHHHHcCC---EEEEEcCCcCCHHHHHHHHHHHHHhCCEE
Confidence 65544433333221 566662 2235567778888877777653
No 147
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.36 E-value=2.1e-06 Score=86.46 Aligned_cols=110 Identities=17% Similarity=0.087 Sum_probs=78.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++++|||.|.+|..++..|...|.+|+++||++++.+...+.+.. .....++.+.+.+ +|+||.++|.. .
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~-----~~~~~~l~~~l~~---aDiVI~t~p~~-~- 222 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLS-----PFHLSELAEEVGK---IDIIFNTIPAL-V- 222 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCe-----eecHHHHHHHhCC---CCEEEECCChh-h-
Confidence 589999999999999999999999999999998876655543321 1112244455444 99999999864 1
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecc
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~ 131 (503)
+-++....++++.+|||.++..-. +. . +..+++|+..+.+
T Consensus 223 --i~~~~l~~~~~g~vIIDla~~pgg-td-~-~~a~~~Gv~~~~~ 262 (296)
T PRK08306 223 --LTKEVLSKMPPEALIIDLASKPGG-TD-F-EYAEKRGIKALLA 262 (296)
T ss_pred --hhHHHHHcCCCCcEEEEEccCCCC-cC-e-eehhhCCeEEEEE
Confidence 224566678899999999876544 32 1 3456678777654
No 148
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.35 E-value=2.8e-05 Score=73.36 Aligned_cols=116 Identities=9% Similarity=0.075 Sum_probs=82.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
|+|+|||. |.||+.++..|.++||.|++ .+ +|+||+|+|.. .
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~~---------------------------------~~---~DlVilavPv~-~ 43 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVYI---------------------------------KK---ADHAFLSVPID-A 43 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEEE---------------------------------CC---CCEEEEeCCHH-H
Confidence 58999987 99999999999999999851 12 89999999985 6
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecc-cCCCChhhhhcC---CcccC--CCCHHHHHHHH
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEEGARHG---PSLMP--GGSFEAYNNIR 159 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsgg~~~a~~G---~~i~~--gg~~~a~~~v~ 159 (503)
+.++++++. .+|+|.++++.... + .+..|++. |+.| +..+..+ ..+++ ..++++.+.++
T Consensus 44 ~~~~i~~~~------~~v~Dv~SvK~~i~----~----~~~~~vg~HPMfG-p~~a~~~lf~~~iv~~~~~~~~~~~~~~ 108 (197)
T PRK06444 44 ALNYIESYD------NNFVEISSVKWPFK----K----YSGKIVSIHPLFG-PMSYNDGVHRTVIFINDISRDNYLNEIN 108 (197)
T ss_pred HHHHHHHhC------CeEEeccccCHHHH----H----hcCCEEecCCCCC-CCcCcccccceEEEECCCCCHHHHHHHH
Confidence 677776654 37999999875321 1 24568885 7776 4444432 33222 34667778888
Q ss_pred HHHHHHhcccCCCCcEEEeCCcc
Q 010702 160 DILQKVAAQVDDGPCVTYIGEGG 182 (503)
Q Consensus 160 ~ll~~ig~~~~~~~~v~~~G~~G 182 (503)
.+++ | ..++.+.+..
T Consensus 109 ~l~~--G------~~~~~~t~ee 123 (197)
T PRK06444 109 EMFR--G------YHFVEMTADE 123 (197)
T ss_pred HHHc--C------CEEEEeCHHH
Confidence 8887 6 4677776643
No 149
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=98.33 E-value=1.7e-06 Score=85.97 Aligned_cols=117 Identities=21% Similarity=0.240 Sum_probs=81.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh--
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS-- 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~-- 84 (503)
+++.|+|+|.+|.+++..|++.|++|+++||++++.+++.+.....+ .+. ..+..+.. +..+|+||.|+|.+.
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~--~~~-~~~~~~~~--~~~~DivInatp~gm~~ 192 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYG--EIQ-AFSMDELP--LHRVDLIINATSAGMSG 192 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcC--ceE-Eechhhhc--ccCccEEEECCCCCCCC
Confidence 57999999999999999999999999999999998888776532111 112 22333322 224899999999752
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecc
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~ 131 (503)
.++++.- ....+.++.+++|++...+.+ .+.+..+++|+++++.
T Consensus 193 ~~~~~~~-~~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~~~vdG 236 (270)
T TIGR00507 193 NIDEPPV-PAEKLKEGMVVYDMVYNPGET--PFLAEAKSLGTKTIDG 236 (270)
T ss_pred CCCCCCC-CHHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCeeeCC
Confidence 1211100 023467899999998876544 5777778888877753
No 150
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.32 E-value=7.8e-06 Score=84.28 Aligned_cols=127 Identities=17% Similarity=0.113 Sum_probs=91.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHhhcccCCCCe-ee-eCCHHHHHhccCCCcEEEEecCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPL-TG-HYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i-~~-~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
||+|-|||+|.+|+..|..|+++| ++|++-||++++++++......+ ... .. ..+.+++.+-|++.|+||.++|.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~--v~~~~vD~~d~~al~~li~~~d~VIn~~p~ 78 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGK--VEALQVDAADVDALVALIKDFDLVINAAPP 78 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcccc--ceeEEecccChHHHHHHHhcCCEEEEeCCc
Confidence 478999999999999999999999 99999999999999887653110 011 11 23444444445558999999998
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEe-cccCCCChhh
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGEEG 139 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i-~~pvsgg~~~ 139 (503)
.. -..+++.. ++.|.-++|+|...+.. .++...+.+.|+..+ ++++..|...
T Consensus 79 ~~-~~~i~ka~---i~~gv~yvDts~~~~~~-~~~~~~a~~Agit~v~~~G~dPGi~n 131 (389)
T COG1748 79 FV-DLTILKAC---IKTGVDYVDTSYYEEPP-WKLDEEAKKAGITAVLGCGFDPGITN 131 (389)
T ss_pred hh-hHHHHHHH---HHhCCCEEEcccCCchh-hhhhHHHHHcCeEEEcccCcCcchHH
Confidence 63 33444433 45789999999887665 677777777786554 5777766543
No 151
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.27 E-value=4.7e-06 Score=84.59 Aligned_cols=95 Identities=18% Similarity=0.128 Sum_probs=68.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.++|+|||+|.||..++..|...| .+|+++||++++.+++.+.... .+...++..+.+.. +|+||.+++.+.
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~----~~~~~~~~~~~l~~---aDvVi~at~~~~ 250 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGG----NAVPLDELLELLNE---ADVVISATGAPH 250 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCC----eEEeHHHHHHHHhc---CCEEEECCCCCc
Confidence 368999999999999999999866 6799999999988888765321 11222334444444 999999999875
Q ss_pred hHHHHHHHHHhcC-CCCCEEEecCC
Q 010702 85 PVDQTIAALSEHM-SPGDCIIDGGN 108 (503)
Q Consensus 85 ~v~~vl~~l~~~l-~~g~iIId~st 108 (503)
. ...+..+.... .++.+|||.+.
T Consensus 251 ~-~~~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 251 Y-AKIVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred h-HHHHHHHHhhCCCCCeEEEEeCC
Confidence 4 44455444333 36789999985
No 152
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.23 E-value=3.2e-06 Score=84.43 Aligned_cols=73 Identities=16% Similarity=0.205 Sum_probs=60.5
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEe-CChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYN-RTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~d-r~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
++|+||| .|.||.+||.+|.++|++|++|+ |++ ++++++++ +|+||+|++.+.
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~----------------------~l~e~~~~---ADIVIsavg~~~ 213 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR----------------------DLPAVCRR---ADILVAAVGRPE 213 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC----------------------CHHHHHhc---CCEEEEecCChh
Confidence 5899999 99999999999999999999995 553 34556666 999999999876
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
.++.++ +.+|.+|||++...
T Consensus 214 ~v~~~~------lk~GavVIDvGin~ 233 (296)
T PRK14188 214 MVKGDW------IKPGATVIDVGINR 233 (296)
T ss_pred hcchhe------ecCCCEEEEcCCcc
Confidence 555443 78999999998754
No 153
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.19 E-value=4.4e-06 Score=74.16 Aligned_cols=97 Identities=16% Similarity=0.147 Sum_probs=66.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCc-EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~-V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
..++.|||+|.||+.++..|++.|.+ |+++||+.++.+++.+...... ..+...++..+.... +|+||.++|.+.
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~-~~~~~~~~~~~~~~~---~DivI~aT~~~~ 87 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVN-IEAIPLEDLEEALQE---ADIVINATPSGM 87 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCS-EEEEEGGGHCHHHHT---ESEEEE-SSTTS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccc-cceeeHHHHHHHHhh---CCeEEEecCCCC
Confidence 36899999999999999999999987 9999999999999887652110 012334445555555 999999999874
Q ss_pred hHHHHHHHHHhcCCCC-CEEEecCC
Q 010702 85 PVDQTIAALSEHMSPG-DCIIDGGN 108 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g-~iIId~st 108 (503)
. .+-.+..+...+. .+++|.+.
T Consensus 88 ~--~i~~~~~~~~~~~~~~v~Dla~ 110 (135)
T PF01488_consen 88 P--IITEEMLKKASKKLRLVIDLAV 110 (135)
T ss_dssp T--SSTHHHHTTTCHHCSEEEES-S
T ss_pred c--ccCHHHHHHHHhhhhceecccc
Confidence 4 1113333322222 49999973
No 154
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.16 E-value=1.3e-05 Score=81.31 Aligned_cols=104 Identities=18% Similarity=0.192 Sum_probs=67.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHh----hcccC-CCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDR----AHREG-QLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~----~~~~g-~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
|+||+|||+|.||..+|..++..|+ +|.++|+++++.+..... ....+ ..+++...+.++ +.+ +|+||++
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~-~~~---aDiVii~ 77 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYED-IAG---SDVVVIT 77 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHH-HCC---CCEEEEC
Confidence 4699999999999999999999876 999999988765432211 11000 013444455544 344 9999998
Q ss_pred cCCC---------------hhHHHHHHHHHhcCCCCCEEEecCCCChhhH
Q 010702 80 VKAG---------------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (503)
Q Consensus 80 vp~~---------------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t 114 (503)
+..+ ..+++++..+.+.. +..++|..+|.....+
T Consensus 78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP~d~~~ 126 (307)
T PRK06223 78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVTNPVDAMT 126 (307)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHH
Confidence 7321 12445556666665 5567777777543333
No 155
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=98.09 E-value=1.5e-05 Score=80.53 Aligned_cols=110 Identities=39% Similarity=0.710 Sum_probs=96.6
Q ss_pred eCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhccCC-cchhHHhhhhhhccccccCCCchh
Q 010702 178 IGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVG-GLSNAELAEIFDEWNKGE-LESFLVEITADIFKVKDEYGEGEL 255 (503)
Q Consensus 178 ~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g-~~~~~~i~~~~~~~~~g~-~~s~l~~~~~~~l~~~~~~~~~~~ 255 (503)
.|.. +++|+++|++.++.++.++|++.++++.| |+|++++.++ |+.|. ++||+++.+.+++.+++ .
T Consensus 164 ~G~~---~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i---~~~g~~~~s~~l~~~~~~~~~~~------~ 231 (298)
T TIGR00872 164 CGSG---HFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARV---WRRGSVIRSWLLDLTAIAFRESP------D 231 (298)
T ss_pred ccHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHH---HcCCchhHhHHHHHHHHHHhcCC------c
Confidence 4555 68999999999999999999999999974 3799999887 78876 69999999999987632 4
Q ss_pred HHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhcch
Q 010702 256 VDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK 299 (503)
Q Consensus 256 ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~~~ 299 (503)
++.+.+.+.++++|+|++.+|.+.|+|+|++++|++.|+.|..+
T Consensus 232 ~~~~~~~~~~~~~~r~~v~~a~~~g~p~P~~~~al~~~~~~~~~ 275 (298)
T TIGR00872 232 LAEFSGRVSDSGEGRWTVIAAIDLGVPAPVIATSLQSRFASRDL 275 (298)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 56688787889999999999999999999999999999999876
No 156
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=98.07 E-value=1.6e-05 Score=81.20 Aligned_cols=97 Identities=21% Similarity=0.208 Sum_probs=72.6
Q ss_pred CcEEEEcccHHHHHHHHHHHh--CCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAE--KGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~--~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.++||||+|.||...++.|.. ...+|.+|||++++.+.+.+.-...+ ..+..+.++++++++ +|+|++|+|+..
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g-~~v~~~~~~~eav~~---aDiVitaT~s~~ 204 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYE-VPVRAATDPREAVEG---CDILVTTTPSRK 204 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhC-CcEEEeCCHHHHhcc---CCEEEEecCCCC
Confidence 579999999999997666654 44689999999999988876432111 135678999999987 999999998864
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChh
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~ 112 (503)
+ ++. ...+++|..|...++..|.
T Consensus 205 P---~~~--~~~l~~g~~v~~vGs~~p~ 227 (325)
T TIGR02371 205 P---VVK--ADWVSEGTHINAIGADAPG 227 (325)
T ss_pred c---Eec--HHHcCCCCEEEecCCCCcc
Confidence 3 221 1346899999888876653
No 157
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=98.07 E-value=4.8e-05 Score=71.65 Aligned_cols=120 Identities=18% Similarity=0.215 Sum_probs=78.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCc-EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK--GFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~--G~~-V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
++|||||+|.+|..+...+.+. +++ |.+|||+.+++.++.+.- +....++++|+++. +|+++.|...
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~------~~~~~s~ide~~~~---~DlvVEaAS~- 70 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASV------GRRCVSDIDELIAE---VDLVVEAASP- 70 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhc------CCCccccHHHHhhc---cceeeeeCCH-
Confidence 4799999999999998877654 354 779999999998877643 23445889999876 9999999876
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccE--ecccCCCCh
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY--LGMGVSGGE 137 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~--i~~pvsgg~ 137 (503)
+++++...+++.. ..+-+|+..+.-..+...++...+.+.+-+. +..+-.||-
T Consensus 71 ~Av~e~~~~~L~~-g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pSGAiGGl 125 (255)
T COG1712 71 EAVREYVPKILKA-GIDVIVMSVGALADEGLRERLRELAKCGGARVYLPSGAIGGL 125 (255)
T ss_pred HHHHHHhHHHHhc-CCCEEEEechhccChHHHHHHHHHHhcCCcEEEecCccchhH
Confidence 4677766555542 1234455444444334444444455544333 333444543
No 158
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.06 E-value=1.8e-05 Score=77.64 Aligned_cols=87 Identities=16% Similarity=0.281 Sum_probs=69.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH-HHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK-VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|+|||.|.-|.+-|+||.++|.+|++--|.... .+...+.| +. ..+++|++.. +|+|++.+|+. .
T Consensus 19 K~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dG-------f~-V~~v~ea~k~---ADvim~L~PDe-~ 86 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDG-------FK-VYTVEEAAKR---ADVVMILLPDE-Q 86 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcC-------CE-eecHHHHhhc---CCEEEEeCchh-h
Confidence 58999999999999999999999999987776555 33333333 33 5689999987 99999999995 5
Q ss_pred HHHHHH-HHHhcCCCCCEEEe
Q 010702 86 VDQTIA-ALSEHMSPGDCIID 105 (503)
Q Consensus 86 v~~vl~-~l~~~l~~g~iIId 105 (503)
-.++++ ++.|.|.+|+.+.-
T Consensus 87 q~~vy~~~I~p~Lk~G~aL~F 107 (338)
T COG0059 87 QKEVYEKEIAPNLKEGAALGF 107 (338)
T ss_pred HHHHHHHHhhhhhcCCceEEe
Confidence 677775 99999999986543
No 159
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=98.03 E-value=3.7e-05 Score=77.75 Aligned_cols=104 Identities=19% Similarity=0.231 Sum_probs=69.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHH----HHhhcccC-CCCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDET----LDRAHREG-QLPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l----~~~~~~~g-~~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
|||+|||+|.||..+|..|+.+|+ +|.++|++++..+.. .+...... ..+++.+.+.++ +++ +|+||+++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~---aDiVIita 77 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TAN---SDIVVITA 77 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCC---CCEEEEcC
Confidence 589999999999999999999887 899999976643311 11111000 014556677776 444 99999999
Q ss_pred CCCh---------------hHHHHHHHHHhcCCCCCEEEecCCCChhhHH
Q 010702 81 KAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTE 115 (503)
Q Consensus 81 p~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~ 115 (503)
+.+. .++++++.+.++. ++.+||..||-....+.
T Consensus 78 g~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~tNP~di~t~ 126 (305)
T TIGR01763 78 GLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVSNPLDAMTY 126 (305)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHH
Confidence 7321 2344456666665 56788888885544443
No 160
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.02 E-value=1.2e-05 Score=79.70 Aligned_cols=74 Identities=14% Similarity=0.249 Sum_probs=61.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|+|||. |.||.+||.+|.++|++|++|... +.++++.+++ +|+||.+++.+..
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~---------------------t~~l~~~~~~---ADIVI~avg~~~~ 214 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR---------------------TRNLAEVARK---ADILVVAIGRGHF 214 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC---------------------CCCHHHHHhh---CCEEEEecCcccc
Confidence 57999999 999999999999999999999311 2367777777 9999999998766
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
++... +++|.+|||+|...
T Consensus 215 v~~~~------ik~GavVIDvgin~ 233 (284)
T PRK14179 215 VTKEF------VKEGAVVIDVGMNR 233 (284)
T ss_pred CCHHH------ccCCcEEEEeccee
Confidence 55543 78999999998654
No 161
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.99 E-value=2.2e-05 Score=68.27 Aligned_cols=98 Identities=17% Similarity=0.220 Sum_probs=62.4
Q ss_pred cEEEEc-ccHHHHHHHHHHHhC-CCcEEEE-eCChhHHHHHHHhhcccCCCCee-eeCCHHHHHhccCCCcEEEEecCCC
Q 010702 8 RIGLAG-LAVMGQNLALNVAEK-GFPISVY-NRTTSKVDETLDRAHREGQLPLT-GHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~-G~~V~v~-dr~~~~~~~l~~~~~~~g~~~i~-~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
||+||| .|.+|..++..|.++ ++++... +++.++.+.+...+.... .+. ...+..++.. .++|+||+|+|++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~DvV~~~~~~~ 76 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLK--GEVVLELEPEDFEE--LAVDIVFLALPHG 76 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccc--cccccccccCChhh--cCCCEEEEcCCcH
Confidence 689999 599999999999985 7887655 665443333332221100 010 0111122221 2389999999997
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
...+++..+.+.+.+|.+|||+|+..
T Consensus 77 -~~~~~~~~~~~~~~~g~~viD~s~~~ 102 (122)
T smart00859 77 -VSKEIAPLLPKAAEAGVKVIDLSSAF 102 (122)
T ss_pred -HHHHHHHHHHhhhcCCCEEEECCccc
Confidence 55556555666678999999999874
No 162
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.95 E-value=9.9e-05 Score=71.34 Aligned_cols=99 Identities=20% Similarity=0.312 Sum_probs=71.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh-hcccCCCCeeeeCCHHHHHhc--cCCCcEEEEecCCC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-AHREGQLPLTGHYTPRDFVLS--IQRPRSVIILVKAG 83 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-~~~~g~~~i~~~~s~~e~~~~--l~~~dvIil~vp~~ 83 (503)
|+|.|||+|.+|..+|+.|.+.||+|.+.|+++++++++... .... .+....+-.+++++ +.++|+++.++..+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~---~v~gd~t~~~~L~~agi~~aD~vva~t~~d 77 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTH---VVIGDATDEDVLEEAGIDDADAVVAATGND 77 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceE---EEEecCCCHHHHHhcCCCcCCEEEEeeCCC
Confidence 589999999999999999999999999999999998885542 1110 13344444555443 45699999998886
Q ss_pred hhHHHHHHHHHhc-CCCCCEEEecCCC
Q 010702 84 SPVDQTIAALSEH-MSPGDCIIDGGNE 109 (503)
Q Consensus 84 ~~v~~vl~~l~~~-l~~g~iIId~st~ 109 (503)
.+..++-.+... +....+|.-..+.
T Consensus 78 -~~N~i~~~la~~~~gv~~viar~~~~ 103 (225)
T COG0569 78 -EVNSVLALLALKEFGVPRVIARARNP 103 (225)
T ss_pred -HHHHHHHHHHHHhcCCCcEEEEecCH
Confidence 566666555533 5555666665554
No 163
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=97.91 E-value=0.00012 Score=74.69 Aligned_cols=105 Identities=14% Similarity=0.165 Sum_probs=65.5
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHH--H--HHhhcccC-CCCeeeeCCHHHHHhccCCCcEEEE
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDE--T--LDRAHREG-QLPLTGHYTPRDFVLSIQRPRSVII 78 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~--l--~~~~~~~g-~~~i~~~~s~~e~~~~l~~~dvIil 78 (503)
..+||+|||+|.||..+|..++..|+ +|.++|+++++... + .......+ ..++....+.+++ ++ +|+||+
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l-~~---aDiVI~ 80 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDI-AG---SDVVIV 80 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHHh-CC---CCEEEE
Confidence 34689999999999999999999996 89999999985421 1 11100000 0135545666543 44 999999
Q ss_pred ecCCC----h----------------hHHHHHHHHHhcCCCCCEEEecCCCChhhH
Q 010702 79 LVKAG----S----------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (503)
Q Consensus 79 ~vp~~----~----------------~v~~vl~~l~~~l~~g~iIId~st~~~~~t 114 (503)
+.-.+ . .+++++..+.+.. +..++|..||.....+
T Consensus 81 tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~sNP~di~t 135 (321)
T PTZ00082 81 TAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVITNPLDVMV 135 (321)
T ss_pred CCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHH
Confidence 76221 1 1334445665655 4457777777543333
No 164
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.89 E-value=6.6e-05 Score=68.05 Aligned_cols=91 Identities=11% Similarity=0.121 Sum_probs=62.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
+++.|+|.|..|+++|+.|...|-+|++++++|-+.-+....| ++. .+.++++.. +|++|.++-....+
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dG-------f~v-~~~~~a~~~---adi~vtaTG~~~vi 92 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDG-------FEV-MTLEEALRD---ADIFVTATGNKDVI 92 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT--------EE-E-HHHHTTT----SEEEE-SSSSSSB
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcC-------cEe-cCHHHHHhh---CCEEEECCCCcccc
Confidence 4799999999999999999999999999999998765555544 333 467888776 99999887654321
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCCh
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWY 111 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~ 111 (503)
. .+..+.+++|.++.+.+....
T Consensus 93 ~---~e~~~~mkdgail~n~Gh~d~ 114 (162)
T PF00670_consen 93 T---GEHFRQMKDGAILANAGHFDV 114 (162)
T ss_dssp ----HHHHHHS-TTEEEEESSSSTT
T ss_pred C---HHHHHHhcCCeEEeccCcCce
Confidence 1 344556889999998887643
No 165
>PLN00203 glutamyl-tRNA reductase
Probab=97.89 E-value=5.2e-05 Score=81.74 Aligned_cols=99 Identities=16% Similarity=0.172 Sum_probs=67.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
..+|+|||+|.||..++..|...|. +|+++||++++.+.+.+...... ..+....+..+++.. +|+||.|++.+.
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~-i~~~~~~dl~~al~~---aDVVIsAT~s~~ 341 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVE-IIYKPLDEMLACAAE---ADVVFTSTSSET 341 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCc-eEeecHhhHHHHHhc---CCEEEEccCCCC
Confidence 3579999999999999999999997 69999999999988876531100 011223455555555 999999987664
Q ss_pred h--HHHHHHHHHhcC---CCCCEEEecCC
Q 010702 85 P--VDQTIAALSEHM---SPGDCIIDGGN 108 (503)
Q Consensus 85 ~--v~~vl~~l~~~l---~~g~iIId~st 108 (503)
. .++.++.+.+.- .+..++||.+-
T Consensus 342 pvI~~e~l~~~~~~~~~~~~~~~~IDLAv 370 (519)
T PLN00203 342 PLFLKEHVEALPPASDTVGGKRLFVDISV 370 (519)
T ss_pred CeeCHHHHHHhhhcccccCCCeEEEEeCC
Confidence 4 334444443211 12247888764
No 166
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=97.89 E-value=2.4e-05 Score=81.40 Aligned_cols=195 Identities=17% Similarity=0.132 Sum_probs=110.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCC------hhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRT------TSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~------~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
++|+|||+|.+|.+.|.+|...|++|++--|. .+..+.+.+.+ +. ..+++|++.. +|+|++.+
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dG-------F~-v~~~~Ea~~~---ADvVviLl 105 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENG-------FK-VGTYEELIPQ---ADLVINLT 105 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcC-------Cc-cCCHHHHHHh---CCEEEEcC
Confidence 68999999999999999999999999944433 33444443332 33 3678888887 99999999
Q ss_pred CCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEe-cccCCCChhhhh-----cCC-ccc-CC---
Q 010702 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGEEGAR-----HGP-SLM-PG--- 149 (503)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i-~~pvsgg~~~a~-----~G~-~i~-~g--- 149 (503)
|+. .-..+.+++.+.+++|.++.-. -+.-.. .......+++..+ -+|=..|....+ .|. +++ +-
T Consensus 106 PDt-~q~~v~~~i~p~LK~Ga~L~fs-HGFni~---~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~Gvp~l~AV~~~q 180 (487)
T PRK05225 106 PDK-QHSDVVRAVQPLMKQGAALGYS-HGFNIV---EVGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPEN 180 (487)
T ss_pred ChH-HHHHHHHHHHhhCCCCCEEEec-CCceee---eCceeCCCCCcEEEECCCCCCchHHHHHhcCCCceEEEEEeecC
Confidence 997 4556668999999999887643 222100 0011122344433 345444433221 232 222 22
Q ss_pred -CCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHH-hHHHHHHHHHHHHHHH-HHHHHHHhCCCCHHHHHH
Q 010702 150 -GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVK-MVHNGIEYGDMQLISE-AYDVLKHVGGLSNAELAE 222 (503)
Q Consensus 150 -g~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK-~v~N~i~~~~~~~~~E-a~~l~~~~g~~~~~~i~~ 222 (503)
.+..+++.+...-..+|+.- .-++...- ..-...- +-.+++.-+.++.+.| .+..+.+.| ++|+....
T Consensus 181 D~~g~a~~~ala~a~~iG~~r---agv~~ttf-~~E~~sDL~GEq~vLcG~~~~~~~~~Fe~lve~G-~~pe~A~k 251 (487)
T PRK05225 181 DPKGEGMAIAKAWAAATGGHR---AGVLESSF-VAEVKSDLMGEQTILCGMLQAGSLLCFDKLVAEG-TDPAYAEK 251 (487)
T ss_pred CCCchHHHHHHHHHHHhCCCc---cceeecch-HHHHhhcchhhHHHHHhHHHHHHHHHHHHHHHcC-CCHHHHHH
Confidence 23346777777778888421 11222110 0000000 1223344444443333 345556667 99887653
No 167
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.88 E-value=7.9e-05 Score=76.14 Aligned_cols=99 Identities=14% Similarity=0.123 Sum_probs=73.7
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAE-KGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~-~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.+++|||+|.+|...+..++. .+. +|.+|||++++.+++.+.........+..+.+.++++.+ +|+|+.|+|...
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---aDiVi~aT~s~~ 204 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEE---ADIIVTVTNAKT 204 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhc---CCEEEEccCCCC
Confidence 479999999999998877753 454 699999999999888764321100134567888888877 999999999874
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhH
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t 114 (503)
. ++. ..+++|..|+..++..|...
T Consensus 205 p---~i~---~~l~~G~hV~~iGs~~p~~~ 228 (325)
T PRK08618 205 P---VFS---EKLKKGVHINAVGSFMPDMQ 228 (325)
T ss_pred c---chH---HhcCCCcEEEecCCCCcccc
Confidence 3 333 45789999999888766443
No 168
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.87 E-value=7.6e-05 Score=75.33 Aligned_cols=117 Identities=9% Similarity=0.103 Sum_probs=81.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhC-C-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK-G-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~-G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.++||||+|.+|...++.+..- . -+|.+|||++++.++|.++.....+..+..++++++++.+ +|+|+.+++...
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~---aDIV~taT~s~~ 194 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRD---ADTITSITNSDT 194 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhc---CCEEEEecCCCC
Confidence 4799999999999998888753 2 3699999999999988765432101246778999999988 999999998764
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecc
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~ 131 (503)
+ +++ ..++++|..|.-.++..|...+--.+.+.....-|+|.
T Consensus 195 P---~~~--~~~l~pg~hV~aiGs~~p~~~El~~~~l~~a~~v~vD~ 236 (301)
T PRK06407 195 P---IFN--RKYLGDEYHVNLAGSNYPNRREAEHSVLNDADIVVTEH 236 (301)
T ss_pred c---Eec--HHHcCCCceEEecCCCCCCcccCCHHHHHhCCEEEECC
Confidence 3 331 13567898888887766543322223333322345663
No 169
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=97.87 E-value=6.2e-05 Score=79.52 Aligned_cols=89 Identities=12% Similarity=0.040 Sum_probs=69.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|+|||.|.+|+.+|..+...|.+|+++++++.+.......+ +. ..+++++++. +|+|++++..
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G-------~~-~~~leell~~---ADIVI~atGt---- 319 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEG-------YQ-VVTLEDVVET---ADIFVTATGN---- 319 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcC-------ce-eccHHHHHhc---CCEEEECCCc----
Confidence 5799999999999999999999999999999987754433332 22 3467888776 9999998643
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCC
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~ 110 (503)
+.++ .+....+++|.+|++.+...
T Consensus 320 ~~iI~~e~~~~MKpGAiLINvGr~d 344 (476)
T PTZ00075 320 KDIITLEHMRRMKNNAIVGNIGHFD 344 (476)
T ss_pred ccccCHHHHhccCCCcEEEEcCCCc
Confidence 3455 46677789999999998873
No 170
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.87 E-value=5.4e-05 Score=81.29 Aligned_cols=105 Identities=13% Similarity=0.244 Sum_probs=74.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++++|+|+|.+|.+++..|++.|++|.++||++++.+.+.+.... . ..+.+++ ..+..+|+||.|+|.+..+
T Consensus 333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~------~-~~~~~~~-~~l~~~DiVInatP~g~~~ 404 (477)
T PRK09310 333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQG------K-AFPLESL-PELHRIDIIINCLPPSVTI 404 (477)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc------c-eechhHh-cccCCCCEEEEcCCCCCcc
Confidence 579999999999999999999999999999999988877654211 1 1122222 1234599999999998643
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
... +. .+|+|+....+.+. +.+.++++|+..++
T Consensus 405 ~~~-------l~--~~v~D~~Y~P~~T~--ll~~A~~~G~~~~~ 437 (477)
T PRK09310 405 PKA-------FP--PCVVDINTLPKHSP--YTQYARSQGSSIIY 437 (477)
T ss_pred hhH-------Hh--hhEEeccCCCCCCH--HHHHHHHCcCEEEC
Confidence 321 11 38999988755433 55667777776554
No 171
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.86 E-value=0.00018 Score=73.01 Aligned_cols=97 Identities=16% Similarity=0.196 Sum_probs=60.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHH-HHHhhcccCCC-C-eeeeCCHHHHHhccCCCcEEEEecC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDE-TLDRAHREGQL-P-LTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~-l~~~~~~~g~~-~-i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
|||+|||+|.+|.++|..|+.+| .+|.++|+++++.+. ..+........ . ...+.+.++ +++ +|+||++++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~-l~~---aDiViita~ 76 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYAD-CKG---ADVVVITAG 76 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHH-hCC---CCEEEEccC
Confidence 48999999999999999999999 589999999877653 21111000000 0 112334443 343 999999997
Q ss_pred CCh---------------hHHHHHHHHHhcCCCCCEEEecCC
Q 010702 82 AGS---------------PVDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 82 ~~~---------------~v~~vl~~l~~~l~~g~iIId~st 108 (503)
.+. .++++.+.+..+-+. .+++..+|
T Consensus 77 ~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~-giiiv~tN 117 (308)
T cd05292 77 ANQKPGETRLDLLKRNVAIFKEIIPQILKYAPD-AILLVVTN 117 (308)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-eEEEEecC
Confidence 531 134445566665544 44554554
No 172
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.85 E-value=0.00011 Score=74.18 Aligned_cols=86 Identities=10% Similarity=0.232 Sum_probs=59.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCCh-hHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTT-SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~-~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
.||+|||+|.||..++..+.++ ++++. +|++++ ++.. +. . ++....+.+++.. ++|+|++|+|+.
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~---~~-~-----~v~~~~d~~e~l~---~iDVViIctPs~ 71 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD---TE-T-----PVYAVADDEKHLD---DVDVLILCMGSA 71 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh---hc-C-----CccccCCHHHhcc---CCCEEEEcCCCc
Confidence 6999999999999999999876 67866 689985 3322 11 1 2233445555544 499999999987
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st 108 (503)
...+. +.+.|..|.-+||+.-
T Consensus 72 th~~~----~~~~L~aG~NVV~s~~ 92 (324)
T TIGR01921 72 TDIPE----QAPYFAQFANTVDSFD 92 (324)
T ss_pred cCHHH----HHHHHHcCCCEEECCC
Confidence 65443 3444567777888754
No 173
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.85 E-value=6.6e-05 Score=65.57 Aligned_cols=107 Identities=20% Similarity=0.266 Sum_probs=69.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHh-CCCcEE-EEeCChhH-----HHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEE
Q 010702 7 SRIGLAGL-AVMGQNLALNVAE-KGFPIS-VYNRTTSK-----VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~-~G~~V~-v~dr~~~~-----~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil 78 (503)
|||+|+|+ |.||+.++..+.+ .|+++. +++|+++. +.++.... . .++...++++++.+. +|+||-
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~-~---~~~~v~~~l~~~~~~---~DVvID 73 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG-P---LGVPVTDDLEELLEE---ADVVID 73 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS-T----SSBEBS-HHHHTTH----SEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC-C---cccccchhHHHhccc---CCEEEE
Confidence 58999999 9999999999998 788854 67888721 11122111 1 146778899999888 999988
Q ss_pred ecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc
Q 010702 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124 (503)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~ 124 (503)
...+ ..+.+.++..+. .|.-+|-++|+......+..+.+.++
T Consensus 74 fT~p-~~~~~~~~~~~~---~g~~~ViGTTG~~~~~~~~l~~~a~~ 115 (124)
T PF01113_consen 74 FTNP-DAVYDNLEYALK---HGVPLVIGTTGFSDEQIDELEELAKK 115 (124)
T ss_dssp ES-H-HHHHHHHHHHHH---HT-EEEEE-SSSHHHHHHHHHHHTTT
T ss_pred cCCh-HHhHHHHHHHHh---CCCCEEEECCCCCHHHHHHHHHHhcc
Confidence 8733 455655555544 47788888888865554555555444
No 174
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.85 E-value=0.00015 Score=75.64 Aligned_cols=100 Identities=15% Similarity=0.102 Sum_probs=73.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
.+|+|+|.|.+|..+|+.+...|.+|.++|+++.+.......+ +. ..+.++++.. +|+||.++..
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G-------~~-v~~leeal~~---aDVVItaTG~---- 260 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDG-------FR-VMTMEEAAKI---GDIFITATGN---- 260 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcC-------CE-eCCHHHHHhc---CCEEEECCCC----
Confidence 5799999999999999999999999999999998765544433 22 2356777665 9999987654
Q ss_pred HHHHH-HHHhcCCCCCEEEecCCCCh-hhHHHHHHHH
Q 010702 87 DQTIA-ALSEHMSPGDCIIDGGNEWY-LNTERRIHEA 121 (503)
Q Consensus 87 ~~vl~-~l~~~l~~g~iIId~st~~~-~~t~~~~~~l 121 (503)
..+++ +....+++|.++++.+.... -+...+.+.+
T Consensus 261 ~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~ 297 (406)
T TIGR00936 261 KDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELA 297 (406)
T ss_pred HHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHH
Confidence 34453 46677899999999888654 3444444433
No 175
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.83 E-value=6.3e-05 Score=78.15 Aligned_cols=98 Identities=16% Similarity=0.226 Sum_probs=68.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCee-eeCCHHHHHhccCCCcEEEEecCC-Ch
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLT-GHYTPRDFVLSIQRPRSVIILVKA-GS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~-~~~s~~e~~~~l~~~dvIil~vp~-~~ 84 (503)
.+|.|||+|.+|...++.+...|.+|.++||++++.+.+...... .+. ...+.+++.+.++.+|+||.+++. +.
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~----~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGG----RIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCc----eeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 469999999999999999999999999999999988776654321 011 123344444445559999999743 11
Q ss_pred hHHHHH-HHHHhcCCCCCEEEecCC
Q 010702 85 PVDQTI-AALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 85 ~v~~vl-~~l~~~l~~g~iIId~st 108 (503)
....++ .+.+..++++.+|||.+.
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDva~ 268 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDVAI 268 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEEEec
Confidence 111222 555566789999999774
No 176
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.83 E-value=8.1e-05 Score=78.66 Aligned_cols=95 Identities=19% Similarity=0.184 Sum_probs=64.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
.+|+|||+|.||..++..|...| .+|+++||++++.+.+.+.... ......++.+.+.. +|+||.|++.+..
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~----~~i~~~~l~~~l~~---aDvVi~aT~s~~~ 253 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGG----EAVKFEDLEEYLAE---ADIVISSTGAPHP 253 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCC----eEeeHHHHHHHHhh---CCEEEECCCCCCc
Confidence 57999999999999999999999 7899999999988777664211 11222344555555 9999999877644
Q ss_pred H--HHHHHHHHhcCCCCCEEEecCC
Q 010702 86 V--DQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 86 v--~~vl~~l~~~l~~g~iIId~st 108 (503)
+ .+.+......-..+.+++|.+.
T Consensus 254 ii~~e~l~~~~~~~~~~~~viDla~ 278 (417)
T TIGR01035 254 IVSKEDVERALRERTRPLFIIDIAV 278 (417)
T ss_pred eEcHHHHHHHHhcCCCCeEEEEeCC
Confidence 2 1222222211112348888863
No 177
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.80 E-value=0.00011 Score=74.22 Aligned_cols=96 Identities=14% Similarity=0.048 Sum_probs=73.3
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAE-KGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~-~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.+|+|||+|.+|...+..+.. .+. +|.+|||++++.+++.++....+ ..+. +.+.++++++ +|+|+.|+|...
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~-~~~~-~~~~~~av~~---aDiVitaT~s~~ 200 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALG-PTAE-PLDGEAIPEA---VDLVVTATTSRT 200 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC-CeeE-ECCHHHHhhc---CCEEEEccCCCC
Confidence 579999999999999999975 554 69999999999998887643211 1222 5788888887 999999999875
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhh
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLN 113 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~ 113 (503)
+ ++.. .+++|..|...++..|..
T Consensus 201 P---l~~~---~~~~g~hi~~iGs~~p~~ 223 (304)
T PRK07340 201 P---VYPE---AARAGRLVVAVGAFTPDM 223 (304)
T ss_pred c---eeCc---cCCCCCEEEecCCCCCCc
Confidence 4 3332 368999999988776643
No 178
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=97.80 E-value=0.00029 Score=70.36 Aligned_cols=101 Identities=14% Similarity=0.133 Sum_probs=73.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--C-----CcEEEEeCChh------HHHHHHH-hhcccCCC-------CeeeeCCHHH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK--G-----FPISVYNRTTS------KVDETLD-RAHREGQL-------PLTGHYTPRD 65 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~--G-----~~V~v~dr~~~------~~~~l~~-~~~~~g~~-------~i~~~~s~~e 65 (503)
.||+|||.|++|+++|+.+.++ + .+|..|-+..+ ++.+... ...+..++ ++...+++.+
T Consensus 22 ~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~e 101 (372)
T KOG2711|consen 22 LKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLVE 101 (372)
T ss_pred eEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHHH
Confidence 4799999999999999998864 2 25777754432 2222221 11110011 5777888888
Q ss_pred HHhccCCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCCh
Q 010702 66 FVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWY 111 (503)
Q Consensus 66 ~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~ 111 (503)
++.+ +|++|..+|. +.+.+++++|..+++++...|.++.+..
T Consensus 102 a~~d---ADilvf~vPh-Qf~~~ic~~l~g~vk~~~~aISL~KG~e 143 (372)
T KOG2711|consen 102 AAKD---ADILVFVVPH-QFIPRICEQLKGYVKPGATAISLIKGVE 143 (372)
T ss_pred Hhcc---CCEEEEeCCh-hhHHHHHHHHhcccCCCCeEEEeeccee
Confidence 8877 9999999999 5899999999999999999999877653
No 179
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.78 E-value=0.00024 Score=69.47 Aligned_cols=119 Identities=14% Similarity=0.142 Sum_probs=77.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC---Cc-EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKG---FP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G---~~-V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
.+||||||+|.||..++..|.+.+ ++ +.+++|++++.+++.+. ...+.++++++.. ++|+|+.|-.
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~--------~~~~~~l~~ll~~--~~DlVVE~A~ 71 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR--------VALLDGLPGLLAW--RPDLVVEAAG 71 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc--------CcccCCHHHHhhc--CCCEEEECCC
Confidence 368999999999999999987642 54 45789998888777653 3567899997432 3999999987
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCChhh--HH-HHHHHHHhcC-ccEecccCCCChh
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLN--TE-RRIHEASQKG-LLYLGMGVSGGEE 138 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~--t~-~~~~~l~~~g-i~~i~~pvsgg~~ 138 (503)
. .++++....++. .|.-++-.|.+-..+ .. ++.+..++.| --|+..+-.||-.
T Consensus 72 ~-~av~e~~~~iL~---~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGAigGlD 128 (267)
T PRK13301 72 Q-QAIAEHAEGCLT---AGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAIAGLD 128 (267)
T ss_pred H-HHHHHHHHHHHh---cCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChHHHhHH
Confidence 7 467777666654 454444455443332 22 2333333333 3356666556644
No 180
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=97.78 E-value=0.00013 Score=73.74 Aligned_cols=101 Identities=19% Similarity=0.185 Sum_probs=63.3
Q ss_pred EEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHH----HHhhcccC-CCCeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 9 IGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDET----LDRAHREG-QLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 9 IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l----~~~~~~~g-~~~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
|+|||+|.||..+|..|+.+|+ +|+++|+++++.+.. .......+ ..+++...+.++ +++ +|+||+++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~-l~d---ADiVIit~g~ 76 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYED-IAG---SDVVVITAGI 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHH-hCC---CCEEEEecCC
Confidence 6899999999999999998887 999999998754321 11110000 013444455544 344 9999998732
Q ss_pred C---------------hhHHHHHHHHHhcCCCCCEEEecCCCChhhH
Q 010702 83 G---------------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (503)
Q Consensus 83 ~---------------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t 114 (503)
+ ..+++++..+.+.. +..++|..||.....+
T Consensus 77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~-p~~~iIv~sNP~di~t 122 (300)
T cd01339 77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYA-PNAIVIVVTNPLDVMT 122 (300)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHH
Confidence 1 11334556666655 5567677776543333
No 181
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=97.77 E-value=0.00012 Score=77.43 Aligned_cols=73 Identities=15% Similarity=0.188 Sum_probs=53.8
Q ss_pred CcEEEEcccHHHHHHHH--HH----HhCCCcEEEEeCChhHHHHHHHhhcc----cC-CCCeeeeCCHHHHHhccCCCcE
Q 010702 7 SRIGLAGLAVMGQNLAL--NV----AEKGFPISVYNRTTSKVDETLDRAHR----EG-QLPLTGHYTPRDFVLSIQRPRS 75 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~--~L----~~~G~~V~v~dr~~~~~~~l~~~~~~----~g-~~~i~~~~s~~e~~~~l~~~dv 75 (503)
+||+|||.|.||.+++. .+ ..+|++|.+||+++++.+........ .+ ..++..++++++++++ +|+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~---AD~ 77 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDG---ADF 77 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcC---CCE
Confidence 47999999999998666 34 45688999999999887665432110 00 1146677888888777 999
Q ss_pred EEEecCC
Q 010702 76 VIILVKA 82 (503)
Q Consensus 76 Iil~vp~ 82 (503)
||++++.
T Consensus 78 Vi~ai~~ 84 (423)
T cd05297 78 VINTIQV 84 (423)
T ss_pred EEEeeEe
Confidence 9999985
No 182
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=97.77 E-value=0.00024 Score=72.67 Aligned_cols=112 Identities=14% Similarity=0.191 Sum_probs=78.3
Q ss_pred CCCcEEEEcccHH-HHHHHHHHHhCCC---cEEEEeCChhHHHHHHHhhcccCCCCe-eeeCCHHHHHhccCCCcEEEEe
Q 010702 5 ALSRIGLAGLAVM-GQNLALNVAEKGF---PISVYNRTTSKVDETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 5 ~~~~IgIIGlG~m-G~~lA~~L~~~G~---~V~v~dr~~~~~~~l~~~~~~~g~~~i-~~~~s~~e~~~~l~~~dvIil~ 79 (503)
+++||||||+|.+ +...+..+.+.+. -|.++|+++++.+++.++.. + ..++|++++++. ++.|+|+++
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~------~~~~~~~~~~ll~~-~~iD~V~Ia 74 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFG------IAKAYTDLEELLAD-PDIDAVYIA 74 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcC------CCcccCCHHHHhcC-CCCCEEEEc
Confidence 3579999999854 4668888888763 36688999999988887642 3 478899999986 236999999
Q ss_pred cCCChhHHHHHHHHHhcCCCCCEEEec--CCCChhhHHHHHHHHHhcCcc
Q 010702 80 VKAGSPVDQTIAALSEHMSPGDCIIDG--GNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iIId~--st~~~~~t~~~~~~l~~~gi~ 127 (503)
+|+....+-++.. |..|+-|+.- =+....+.+++.+..+++|..
T Consensus 75 tp~~~H~e~~~~A----L~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~ 120 (342)
T COG0673 75 TPNALHAELALAA----LEAGKHVLCEKPLALTLEEAEELVELARKAGVK 120 (342)
T ss_pred CCChhhHHHHHHH----HhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCc
Confidence 9998776655444 3455555442 122345666676766666554
No 183
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=97.77 E-value=0.00034 Score=80.73 Aligned_cols=122 Identities=13% Similarity=0.091 Sum_probs=85.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-Cc-------------EEEEeCChhHHHHHHHhhcccCCCCeee-eCCHHHHHhcc
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKG-FP-------------ISVYNRTTSKVDETLDRAHREGQLPLTG-HYTPRDFVLSI 70 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G-~~-------------V~v~dr~~~~~~~l~~~~~~~g~~~i~~-~~s~~e~~~~l 70 (503)
+++|+|||+|.||...|..|++.. ++ |++.|++++.++++.+..... ..+.. +.+.+++.+.+
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~--~~v~lDv~D~e~L~~~v 646 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENA--EAVQLDVSDSESLLKYV 646 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCC--ceEEeecCCHHHHHHhh
Confidence 568999999999999999998753 33 899999999888877643110 01334 56778887755
Q ss_pred CCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec-ccCC
Q 010702 71 QRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVS 134 (503)
Q Consensus 71 ~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvs 134 (503)
+.+|+||+|+|.... ..++.. .+..|.-+++.+ .....+.++.+..++.|+.++. ++..
T Consensus 647 ~~~DaVIsalP~~~H-~~VAka---AieaGkHvv~ek-y~~~e~~~L~e~Ak~AGV~~m~e~GlD 706 (1042)
T PLN02819 647 SQVDVVISLLPASCH-AVVAKA---CIELKKHLVTAS-YVSEEMSALDSKAKEAGITILCEMGLD 706 (1042)
T ss_pred cCCCEEEECCCchhh-HHHHHH---HHHcCCCEEECc-CCHHHHHHHHHHHHHcCCEEEECCccC
Confidence 679999999998643 223332 345677788887 4455666777777788876653 4433
No 184
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.76 E-value=7.3e-05 Score=79.17 Aligned_cols=95 Identities=20% Similarity=0.191 Sum_probs=64.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
.+|+|||+|.||..++..|...|. +|+++||++++.+.+.+.... .+....+..+.+. .+|+||.|++.+..
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~----~~~~~~~~~~~l~---~aDvVI~aT~s~~~ 255 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGG----EAIPLDELPEALA---EADIVISSTGAPHP 255 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC----cEeeHHHHHHHhc---cCCEEEECCCCCCc
Confidence 579999999999999999999997 799999999998877765311 1222233444444 49999999987644
Q ss_pred H--HHHHHHHHh-cCCCCCEEEecCC
Q 010702 86 V--DQTIAALSE-HMSPGDCIIDGGN 108 (503)
Q Consensus 86 v--~~vl~~l~~-~l~~g~iIId~st 108 (503)
+ .+.+..... .-..+.++||.+.
T Consensus 256 ~i~~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 256 IIGKGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred EEcHHHHHHHHhhccCCCeEEEEeCC
Confidence 3 222222211 1124578899874
No 185
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.75 E-value=0.00017 Score=73.31 Aligned_cols=97 Identities=15% Similarity=0.263 Sum_probs=74.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.+++|||+|.++...++.+..- --+|.+|||++++.+.+.+.....+ ..+..+++.++++++ +|+|+.+++...
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~-~~v~~~~~~~~av~~---ADIV~taT~s~~ 204 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALG-FAVNTTLDAAEVAHA---ANLIVTTTPSRE 204 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcC-CcEEEECCHHHHhcC---CCEEEEecCCCC
Confidence 5799999999999998887753 2479999999999998876432211 256778899999987 999999998764
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChh
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~ 112 (503)
+ +++ ...+++|..|+-.++..|.
T Consensus 205 P---~~~--~~~l~~G~hi~~iGs~~p~ 227 (315)
T PRK06823 205 P---LLQ--AEDIQPGTHITAVGADSPG 227 (315)
T ss_pred c---eeC--HHHcCCCcEEEecCCCCcc
Confidence 3 332 1357799999988876653
No 186
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.74 E-value=0.00028 Score=70.02 Aligned_cols=119 Identities=15% Similarity=0.161 Sum_probs=73.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCCh--hHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTT--SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~--~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
|+||||||+|.||+.++..+.+. +.++. +++++. ++....... ++..+++++++ . .++|+|+.|.|
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~-------~~~~~~d~~~l-~--~~~DvVve~t~ 70 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGE-------AVRVVSSVDAL-P--QRPDLVVECAG 70 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhcc-------CCeeeCCHHHh-c--cCCCEEEECCC
Confidence 46999999999999999999876 45543 444432 222221111 24567888887 3 34899999999
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCC---ChhhHHHHHHHHHhcCcc-EecccCCCChh
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNE---WYLNTERRIHEASQKGLL-YLGMGVSGGEE 138 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~---~~~~t~~~~~~l~~~gi~-~i~~pvsgg~~ 138 (503)
.. ...+..... |..|.-++..+.. ......++.+..++.|.. |+..+..|+..
T Consensus 71 ~~-~~~e~~~~a---L~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v~sga~gg~d 127 (265)
T PRK13303 71 HA-ALKEHVVPI---LKAGIDCAVISVGALADEALRERLEQAAEAGGARLHLLSGAIGGID 127 (265)
T ss_pred HH-HHHHHHHHH---HHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEEeChHhhCHH
Confidence 85 444444444 4456666655554 222334556666666654 44555555543
No 187
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=97.72 E-value=0.00063 Score=58.20 Aligned_cols=111 Identities=17% Similarity=0.205 Sum_probs=70.2
Q ss_pred EEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh--ccCCCcEEEEecCCChhH
Q 010702 9 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 9 IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~--~l~~~dvIil~vp~~~~v 86 (503)
|-|+|.|.+|..++..|.+.+.+|.+.|++++.++.+.+.+..- +.+..+-.+..+ .+++++.|+++.+++...
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~----i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n 76 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEV----IYGDATDPEVLERAGIEKADAVVILTDDDEEN 76 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEE----EES-TTSHHHHHHTTGGCESEEEEESSSHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhccccc----ccccchhhhHHhhcCccccCEEEEccCCHHHH
Confidence 56899999999999999997779999999999999988776321 222222233333 345689999999886433
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEe
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (503)
..++..+....+...+++-..+. +..+.++..|+..+
T Consensus 77 ~~~~~~~r~~~~~~~ii~~~~~~------~~~~~l~~~g~d~v 113 (116)
T PF02254_consen 77 LLIALLARELNPDIRIIARVNDP------ENAELLRQAGADHV 113 (116)
T ss_dssp HHHHHHHHHHTTTSEEEEEESSH------HHHHHHHHTT-SEE
T ss_pred HHHHHHHHHHCCCCeEEEEECCH------HHHHHHHHCCcCEE
Confidence 33334444434344566554432 22344555566544
No 188
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.71 E-value=0.00018 Score=73.59 Aligned_cols=96 Identities=13% Similarity=0.229 Sum_probs=70.6
Q ss_pred CcEEEEcccHHHHHHHHHHH-hCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVA-EKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~-~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.+++|||+|.+|...+..|+ ..+. +|.+|+|++++.+++.+.....-+..+...+++++++.+ +|+|+.|+|...
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~---aDiVvtaT~s~~ 206 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSG---ADIIVTTTPSET 206 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhcc---CCEEEEecCCCC
Confidence 47999999999999999997 3664 699999999999988765321100134557888888877 999999998864
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+ ++. ...+++|..|...+.-.
T Consensus 207 p---~i~--~~~l~~g~~i~~vg~~~ 227 (326)
T TIGR02992 207 P---ILH--AEWLEPGQHVTAMGSDA 227 (326)
T ss_pred c---Eec--HHHcCCCcEEEeeCCCC
Confidence 3 332 12467888888776543
No 189
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.71 E-value=0.0002 Score=75.28 Aligned_cols=90 Identities=13% Similarity=0.049 Sum_probs=70.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
.+|+|+|.|.+|..+|..+...|.+|+++|+++.+.......+ +. ..+.+++++. +|+||.++..
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G-------~~-v~~l~eal~~---aDVVI~aTG~---- 277 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDG-------FR-VMTMEEAAEL---GDIFVTATGN---- 277 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcC-------CE-ecCHHHHHhC---CCEEEECCCC----
Confidence 4799999999999999999999999999999998765544432 23 2467777766 9999988744
Q ss_pred HHHHH-HHHhcCCCCCEEEecCCCCh
Q 010702 87 DQTIA-ALSEHMSPGDCIIDGGNEWY 111 (503)
Q Consensus 87 ~~vl~-~l~~~l~~g~iIId~st~~~ 111 (503)
..+++ .....+++|.++++.+....
T Consensus 278 ~~vI~~~~~~~mK~GailiNvG~~d~ 303 (425)
T PRK05476 278 KDVITAEHMEAMKDGAILANIGHFDN 303 (425)
T ss_pred HHHHHHHHHhcCCCCCEEEEcCCCCC
Confidence 33453 56677899999999887643
No 190
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.70 E-value=9.2e-05 Score=73.97 Aligned_cols=117 Identities=18% Similarity=0.118 Sum_probs=75.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
.++.|+|+|.+|++++..|+..| .+|++++|+.++.+++.+.....+ .+....+..+.+ ..+|+||.++|.+..
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~--~~~~~~~~~~~~---~~~DivInaTp~g~~ 198 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALG--KAELDLELQEEL---ADFDLIINATSAGMS 198 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc--ceeecccchhcc---ccCCEEEECCcCCCC
Confidence 57999999999999999999999 689999999999888876532110 011111222333 349999999997632
Q ss_pred HHH-HHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 86 VDQ-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 86 v~~-vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
-.. ...-....++++.+|+|..- .|..| .+.+..+++|+..++
T Consensus 199 ~~~~~~~~~~~~l~~~~~v~DivY-~P~~T-~ll~~A~~~G~~~~~ 242 (278)
T PRK00258 199 GELPLPPLPLSLLRPGTIVYDMIY-GPLPT-PFLAWAKAQGARTID 242 (278)
T ss_pred CCCCCCCCCHHHcCCCCEEEEeec-CCCCC-HHHHHHHHCcCeecC
Confidence 100 00001134677899999976 34444 455556677765443
No 191
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=97.67 E-value=0.00025 Score=63.40 Aligned_cols=122 Identities=18% Similarity=0.252 Sum_probs=75.8
Q ss_pred cEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc-cCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+|.|||+|.+|+.++.+|+..|+ +++++|.+.-....+..+... ....+-..+....+.+..+. +++-+.+.+....
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~-p~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELN-PGVNVTAVPEGIS 79 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHC-CCcEEEEEeeecC
Confidence 58999999999999999999998 699999875444333322100 00000011222233333322 4555655554311
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
-.. . ...+.+-++||+++.. +.....+.+.+.+.++.|++++..|
T Consensus 80 ~~~-~---~~~~~~~diVi~~~d~-~~~~~~l~~~~~~~~i~~i~~~~~g 124 (143)
T cd01483 80 EDN-L---DDFLDGVDLVIDAIDN-IAVRRALNRACKELGIPVIDAGGLG 124 (143)
T ss_pred hhh-H---HHHhcCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 111 1 3345678999999887 4556667778888899999988776
No 192
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.66 E-value=0.00029 Score=72.13 Aligned_cols=96 Identities=17% Similarity=0.213 Sum_probs=69.6
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CC-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAE-KG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~-~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
++|+|||+|.+|...+..+.. .+ .+|.+|+|++++.+++.+......+..+....++++++.+ +|+|+.++|...
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~---aDiVi~aT~s~~ 209 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAG---ADIIVTTTPSEE 209 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHcc---CCEEEEeeCCCC
Confidence 579999999999998888875 45 4799999999999998875321100134567888888877 999999998864
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+ ++.. ..+.+|..|...++..
T Consensus 210 p---~i~~--~~l~~g~~v~~vg~d~ 230 (330)
T PRK08291 210 P---ILKA--EWLHPGLHVTAMGSDA 230 (330)
T ss_pred c---EecH--HHcCCCceEEeeCCCC
Confidence 3 3322 1356787777765543
No 193
>PTZ00117 malate dehydrogenase; Provisional
Probab=97.66 E-value=0.00043 Score=70.49 Aligned_cols=104 Identities=14% Similarity=0.186 Sum_probs=67.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHH---hhcc-cC-CCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLD---RAHR-EG-QLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~---~~~~-~g-~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
.+||+|||+|.||.++|..++..| .+|.++|+++++.+...- .... .+ ..+++...++++ +++ +|+||++
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~-l~~---ADiVVit 80 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYED-IKD---SDVVVIT 80 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHHH-hCC---CCEEEEC
Confidence 368999999999999999999999 689999999865432111 1000 00 013444456664 354 9999999
Q ss_pred c--CCC-------------hhHHHHHHHHHhcCCCCCEEEecCCCChhhH
Q 010702 80 V--KAG-------------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (503)
Q Consensus 80 v--p~~-------------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t 114 (503)
. |.. ..++++...+.+.. +..++|..||.....+
T Consensus 81 ag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~-p~a~vivvsNP~di~t 129 (319)
T PTZ00117 81 AGVQRKEEMTREDLLTINGKIMKSVAESVKKYC-PNAFVICVTNPLDCMV 129 (319)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecChHHHHH
Confidence 8 321 22445556666654 5667777777543333
No 194
>PLN02494 adenosylhomocysteinase
Probab=97.65 E-value=0.00032 Score=74.00 Aligned_cols=88 Identities=14% Similarity=0.081 Sum_probs=68.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|+|+|.|.+|+.+|+.+...|.+|.++++++.+.......+ +.. .+.++++.. +|+|+.+....
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G-------~~v-v~leEal~~---ADVVI~tTGt~--- 320 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEG-------YQV-LTLEDVVSE---ADIFVTTTGNK--- 320 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcC-------Cee-ccHHHHHhh---CCEEEECCCCc---
Confidence 5799999999999999999999999999999987754444433 222 367777776 99999865442
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCC
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~ 109 (503)
.++ .+.+..+++|.++++.+..
T Consensus 321 -~vI~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 321 -DIIMVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred -cchHHHHHhcCCCCCEEEEcCCC
Confidence 333 5566778999999999884
No 195
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.65 E-value=0.00027 Score=73.46 Aligned_cols=96 Identities=20% Similarity=0.233 Sum_probs=67.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
..++.|||+|.||.-.|.+|+++| .+|++.||+.+++.+++++... -+.+++++...|..+|+||.++..+.
T Consensus 178 ~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~-------~~~~l~el~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGA-------EAVALEELLEALAEADVVISSTSAPH 250 (414)
T ss_pred cCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCC-------eeecHHHHHHhhhhCCEEEEecCCCc
Confidence 357999999999999999999999 5799999999999999876421 13355555555555999999976543
Q ss_pred hH--HHHHHHHHhcCCCCCEEEecCCC
Q 010702 85 PV--DQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 85 ~v--~~vl~~l~~~l~~g~iIId~st~ 109 (503)
.+ +..+...... ++.-++||.+..
T Consensus 251 ~ii~~~~ve~a~~~-r~~~livDiavP 276 (414)
T COG0373 251 PIITREMVERALKI-RKRLLIVDIAVP 276 (414)
T ss_pred cccCHHHHHHHHhc-ccCeEEEEecCC
Confidence 32 2222322221 122588888753
No 196
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.64 E-value=0.00047 Score=69.03 Aligned_cols=119 Identities=18% Similarity=0.154 Sum_probs=76.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+++.|||+|-+|++++..|++.|. +|+++||++++.+++.+...... .+......+++...+..+|+||-|+|.+..
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~--~~~~~~~~~~~~~~~~~~DiVInaTp~g~~ 203 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVG--VITRLEGDSGGLAIEKAAEVLVSTVPADVP 203 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcC--cceeccchhhhhhcccCCCEEEECCCCCCC
Confidence 479999999999999999999997 69999999999998876532110 122222223333333459999999998754
Q ss_pred HHHH-HHHHH-----hcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEe
Q 010702 86 VDQT-IAALS-----EHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 86 v~~v-l~~l~-----~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (503)
.+.. +.... ..++++.+++|.--. |..| .+.+..+++|...+
T Consensus 204 ~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~-P~~T-~ll~~A~~~G~~~~ 251 (282)
T TIGR01809 204 ADYVDLFATVPFLLLKRKSSEGIFLDAAYD-PWPT-PLVAIVSAAGWRVI 251 (282)
T ss_pred CCHHHhhhhhhhhccccCCCCcEEEEEeeC-CCCC-HHHHHHHHCCCEEE
Confidence 3321 11111 123467889998643 3333 34455566665444
No 197
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.64 E-value=0.00037 Score=65.67 Aligned_cols=101 Identities=15% Similarity=0.070 Sum_probs=67.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee--eCCHHHHHhccCCCcEEEEecCCC
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~--~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
+++.|+|. |.+|..++..|++.|++|.+++|+.++.+.+.+.........+.. ..+.+++.+.+.++|+||.+.|.+
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at~~g 108 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGAAG 108 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECCCCC
Confidence 57999995 999999999999999999999999998887765321000001222 234444444444599999999987
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
.. ..........++.+++|..-..
T Consensus 109 ~~---~~~~~~~~~~~~~vv~D~~~~~ 132 (194)
T cd01078 109 VE---LLEKLAWAPKPLAVAADVNAVP 132 (194)
T ss_pred ce---echhhhcccCceeEEEEccCCC
Confidence 53 1111222344578999986544
No 198
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.62 E-value=0.00038 Score=68.71 Aligned_cols=100 Identities=12% Similarity=0.144 Sum_probs=65.6
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
++||+|||+ |.||+.++..+.+. ++++. ++|+++++.... .. .++..+.+++++++. +|+|+.+.|+
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~-~~------~~i~~~~dl~~ll~~---~DvVid~t~p 70 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ-GA------LGVAITDDLEAVLAD---ADVLIDFTTP 70 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc-CC------CCccccCCHHHhccC---CCEEEECCCH
Confidence 369999998 99999999988864 67755 689988765443 11 134566788888765 9999988876
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCCC-hhhHHHHHH
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNEW-YLNTERRIH 119 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~-~~~t~~~~~ 119 (503)
. ...+++... +..|.-++..+|.. .....++.+
T Consensus 71 ~-~~~~~~~~a---l~~G~~vvigttG~s~~~~~~l~~ 104 (257)
T PRK00048 71 E-ATLENLEFA---LEHGKPLVIGTTGFTEEQLAELEE 104 (257)
T ss_pred H-HHHHHHHHH---HHcCCCEEEECCCCCHHHHHHHHH
Confidence 4 344444443 34565555555553 333333443
No 199
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.61 E-value=0.00034 Score=71.07 Aligned_cols=118 Identities=14% Similarity=0.125 Sum_probs=83.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
..++|||+|.++....+.+..- .-+|.+|+|+++..+++.......+...+..+.|.+++++. +|+|+.|+|+..
T Consensus 131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~---aDiIvt~T~s~~ 207 (330)
T COG2423 131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEG---ADIVVTATPSTE 207 (330)
T ss_pred cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhc---CCEEEEecCCCC
Confidence 4699999999999998888753 34799999999999988865333221136788999999998 999999999875
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEeccc
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (503)
.++. ..++++|..|.-.++-.|...+--.+.+...+.-|+|.+
T Consensus 208 ---Pil~--~~~l~~G~hI~aiGad~p~k~Eld~e~l~ra~~vvvD~~ 250 (330)
T COG2423 208 ---PVLK--AEWLKPGTHINAIGADAPGKRELDPEVLARADRVVVDSL 250 (330)
T ss_pred ---Ceec--HhhcCCCcEEEecCCCCcccccCCHHHHHhcCeEEEcCH
Confidence 2331 235779998888887654433322333333335566653
No 200
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=97.61 E-value=0.00063 Score=68.94 Aligned_cols=99 Identities=11% Similarity=0.116 Sum_probs=64.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHhhcccC---CCCee-eeCCHHHHHhccCCCcEEEEec
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDETLDRAHREG---QLPLT-GHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~g---~~~i~-~~~s~~e~~~~l~~~dvIil~v 80 (503)
+||+|||+|.+|.++|..|+..| ++|.++|+++++++.+...-...- ..... ...+.++ +.+ +|+||+++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~-l~~---aDIVIita 76 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSD-CKD---ADIVVITA 76 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHH-hCC---CCEEEEcc
Confidence 37999999999999999999999 589999999988766554311000 00112 2234444 344 99999998
Q ss_pred CCCh---------------hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 81 KAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 81 p~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
..+. .++++...+.++- +..+||..||-.
T Consensus 77 g~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~-~~~~vivvsNP~ 120 (306)
T cd05291 77 GAPQKPGETRLDLLEKNAKIMKSIVPKIKASG-FDGIFLVASNPV 120 (306)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecChH
Confidence 6421 1344445666654 456777777643
No 201
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.59 E-value=0.00018 Score=72.05 Aligned_cols=117 Identities=15% Similarity=0.144 Sum_probs=76.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhccc-CCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHRE-GQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~-g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
++|.|||+|.+|++++..|+..|. +|+++||+.++.+.+.+.-... ....+....+..+.+. .+|+||.++|.+-
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~---~aDiVInaTp~Gm 204 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALA---AADGLVHATPTGM 204 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhC---CCCEEEECCcCCC
Confidence 479999999999999999999997 7999999999998887642110 0001222233333334 4999999998762
Q ss_pred hHH-H-HHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 85 PVD-Q-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 85 ~v~-~-vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
.-. . .+. ...++++.+++|..-.. ..| .+.+..+++|...++
T Consensus 205 ~~~~~~~~~--~~~l~~~~~v~DivY~P-~~T-~ll~~A~~~G~~~~~ 248 (284)
T PRK12549 205 AKHPGLPLP--AELLRPGLWVADIVYFP-LET-ELLRAARALGCRTLD 248 (284)
T ss_pred CCCCCCCCC--HHHcCCCcEEEEeeeCC-CCC-HHHHHHHHCCCeEec
Confidence 100 0 011 12367788999987644 334 455556677765443
No 202
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.59 E-value=0.00076 Score=70.56 Aligned_cols=123 Identities=19% Similarity=0.194 Sum_probs=77.4
Q ss_pred EEEEcccHHHHHHHHHHHhCC-C-cEEEEeCChhHHHHHHHhhcccCCCCeee----eCCHHHHHhccCCCcEEEEecCC
Q 010702 9 IGLAGLAVMGQNLALNVAEKG-F-PISVYNRTTSKVDETLDRAHREGQLPLTG----HYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 9 IgIIGlG~mG~~lA~~L~~~G-~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~----~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
|.|+|.|.+|+.++..|++.+ + +|++.||+.++.+++.+..... ++.. ..+.+++.+-++++|+||.|+|.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp 77 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGD---RVEAVQVDVNDPESLAELLRGCDVVINCAGP 77 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTT---TEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhcccc---ceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence 789999999999999999987 4 8999999999998887531000 1111 23444444444559999999987
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEe-cccCCCChhh
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGEEG 139 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i-~~pvsgg~~~ 139 (503)
. .-..+++..+ ..|.-+||.+. ......++.+..+++|+.++ +++...|...
T Consensus 78 ~-~~~~v~~~~i---~~g~~yvD~~~-~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~~ 130 (386)
T PF03435_consen 78 F-FGEPVARACI---EAGVHYVDTSY-VTEEMLALDEEAKEAGVTALPGCGFDPGLSN 130 (386)
T ss_dssp G-GHHHHHHHHH---HHT-EEEESS--HHHHHHHCHHHHHHTTSEEE-S-BTTTBHHH
T ss_pred c-hhHHHHHHHH---HhCCCeeccch-hHHHHHHHHHHHHhhCCEEEeCcccccchHH
Confidence 5 4455554443 35788999332 23444555566666777655 4677766543
No 203
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=97.58 E-value=0.00075 Score=74.14 Aligned_cols=116 Identities=18% Similarity=0.311 Sum_probs=77.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh--ccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~--~l~~~dvIil~vp~~~ 84 (503)
.+|-|+|+|.+|+.+|+.|.++|++|.+.|.|+++++++.+.+.. -+....+-+++.+ .++++|.++++++++.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~----~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~ 493 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIR----AVLGNAANEEIMQLAHLDCARWLLLTIPNGY 493 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCe----EEEcCCCCHHHHHhcCccccCEEEEEcCChH
Confidence 468999999999999999999999999999999999988865432 1333334444443 3557999999999875
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEeccc
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (503)
....++..+....+.-.+|.-.. .+ +..+.+++.|++++=.|
T Consensus 494 ~~~~iv~~~~~~~~~~~iiar~~--~~----~~~~~l~~~Gad~vv~p 535 (558)
T PRK10669 494 EAGEIVASAREKRPDIEIIARAH--YD----DEVAYITERGANQVVMG 535 (558)
T ss_pred HHHHHHHHHHHHCCCCeEEEEEC--CH----HHHHHHHHcCCCEEECh
Confidence 54445554444433334444332 22 23334455677766544
No 204
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.57 E-value=0.0016 Score=67.08 Aligned_cols=131 Identities=14% Similarity=0.185 Sum_probs=73.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC----------CCcE-EEEeCC----------hhHHHHHHHhhcccCCC-CeeeeCCH
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEK----------GFPI-SVYNRT----------TSKVDETLDRAHREGQL-PLTGHYTP 63 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~----------G~~V-~v~dr~----------~~~~~~l~~~~~~~g~~-~i~~~~s~ 63 (503)
..+|+|+|+|.||+.++..|.++ +.+| .++|++ .+....+.+.......+ ......++
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~ 81 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISG 81 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCH
Confidence 36899999999999999998865 3454 466853 33333333321100000 00123478
Q ss_pred HHHHhccCCCcEEEEecCCChhH-HHHHHHHHhcCCCCCEEEecCCCCh-hhHHHHHHHHHhcCccEe-cccCCCCh
Q 010702 64 RDFVLSIQRPRSVIILVKAGSPV-DQTIAALSEHMSPGDCIIDGGNEWY-LNTERRIHEASQKGLLYL-GMGVSGGE 137 (503)
Q Consensus 64 ~e~~~~l~~~dvIil~vp~~~~v-~~vl~~l~~~l~~g~iIId~st~~~-~~t~~~~~~l~~~gi~~i-~~pvsgg~ 137 (503)
+++++. ..+|+|+.|+|+.... +...+-+...+..|..||..+.... ....++.+..++.|..|. .+.+.+|-
T Consensus 82 ~ell~~-~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ea~v~~gl 157 (341)
T PRK06270 82 LEVIRS-VDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRYEATVGGAM 157 (341)
T ss_pred HHHhhc-cCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEEeeeeeech
Confidence 888764 2489999999974331 1122333445667887876543221 123445555566677654 45555443
No 205
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=97.57 E-value=0.00077 Score=69.13 Aligned_cols=109 Identities=12% Similarity=0.141 Sum_probs=77.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCC-
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK--GFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA- 82 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~--G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~- 82 (503)
.||||||+ .||...+..+.+. ++++ .++|+++++.+++.++. ++..+++.++++++ .|++++++|+
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~------gi~~y~~~eell~d---~Di~~V~ipt~ 73 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRL------GVPLYCEVEELPDD---IDIACVVVRSA 73 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHh------CCCccCCHHHHhcC---CCEEEEEeCCC
Confidence 58999999 6899999999875 4665 47899999999888754 34568899999876 7888888754
Q ss_pred ---ChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEe
Q 010702 83 ---GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 83 ---~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (503)
+...+-+. ..+..|.-|+----....+.+++.+..+++|+.+.
T Consensus 74 ~P~~~H~e~a~----~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 74 IVGGQGSALAR----ALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred CCCccHHHHHH----HHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence 23333222 23456666655444445677777777778777655
No 206
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.55 E-value=0.00048 Score=72.17 Aligned_cols=88 Identities=15% Similarity=0.084 Sum_probs=68.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
.+|+|+|+|.+|..+|+.+...|.+|.++|+++.+.+.....| +.. .+.++++.. +|+||.++...
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G-------~~~-~~~~e~v~~---aDVVI~atG~~--- 268 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEG-------YEV-MTMEEAVKE---GDIFVTTTGNK--- 268 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcC-------CEE-ccHHHHHcC---CCEEEECCCCH---
Confidence 4799999999999999999999999999999999877666544 222 245666655 99999987543
Q ss_pred HHHHH-HHHhcCCCCCEEEecCCC
Q 010702 87 DQTIA-ALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 87 ~~vl~-~l~~~l~~g~iIId~st~ 109 (503)
.++. .....+++|.++++.+..
T Consensus 269 -~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 269 -DIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred -HHHHHHHHhcCCCCcEEEEeCCC
Confidence 3443 456778899999998854
No 207
>PRK06046 alanine dehydrogenase; Validated
Probab=97.54 E-value=0.00043 Score=70.75 Aligned_cols=97 Identities=16% Similarity=0.190 Sum_probs=71.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhC-CC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK-GF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~-G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.+|||||+|.+|...+..|... +. .|.+|||++++.+++.+.....-+..+..+++.+++++ +|+|++|+|...
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~----aDiVv~aTps~~ 205 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD----CDILVTTTPSRK 205 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh----CCEEEEecCCCC
Confidence 4799999999999999998843 33 68899999999988876532110012556788888874 899999999864
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChh
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~ 112 (503)
+ +++ ...+++|..|...++..|.
T Consensus 206 P---~~~--~~~l~~g~hV~~iGs~~p~ 228 (326)
T PRK06046 206 P---VVK--AEWIKEGTHINAIGADAPG 228 (326)
T ss_pred c---Eec--HHHcCCCCEEEecCCCCCc
Confidence 3 231 1346789998888876653
No 208
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.53 E-value=0.00095 Score=66.23 Aligned_cols=115 Identities=14% Similarity=0.187 Sum_probs=67.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHh-CCCcEE-EEeCC-hhHHH-HHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 7 SRIGLAG-LAVMGQNLALNVAE-KGFPIS-VYNRT-TSKVD-ETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~-~G~~V~-v~dr~-~~~~~-~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
+||+|+| +|.||+.+++.+.+ .++++. ++||. ++... .+.+..... ..++..+++++++.. .+|+||.+.|
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~-~~gv~~~~d~~~l~~---~~DvVIdfT~ 77 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIG-KVGVPVTDDLEAVET---DPDVLIDFTT 77 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcC-cCCceeeCCHHHhcC---CCCEEEECCC
Confidence 6999999 69999999999986 477755 67854 32211 111110000 013556788888733 3899999997
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCC-hhhHHHHHHHHHhcCccEe
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEW-YLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~-~~~t~~~~~~l~~~gi~~i 129 (503)
+. ...+.+... +..|.-++..++.. +...+++.+..++.|+.++
T Consensus 78 p~-~~~~~~~~a---l~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~ 122 (266)
T TIGR00036 78 PE-GVLNHLKFA---LEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAV 122 (266)
T ss_pred hH-HHHHHHHHH---HHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEE
Confidence 74 444444443 44565555555543 3334444444455455443
No 209
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=97.53 E-value=0.0014 Score=72.85 Aligned_cols=116 Identities=15% Similarity=0.176 Sum_probs=79.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh--ccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~--~l~~~dvIil~vp~~~ 84 (503)
.+|-|+|.|.+|+.+++.|.++|+++++.|.|+++++.+.+.+.. -+....+-.++.+ .++++|.+++++++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~----v~~GDat~~~~L~~agi~~A~~vvv~~~d~~ 476 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMK----VFYGDATRMDLLESAGAAKAEVLINAIDDPQ 476 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCe----EEEEeCCCHHHHHhcCCCcCCEEEEEeCCHH
Confidence 579999999999999999999999999999999999988776532 1334444455553 4667999999998875
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEeccc
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (503)
....++..+....+.-.+++-..+ .+....+.+.|+.++...
T Consensus 477 ~n~~i~~~ar~~~p~~~iiaRa~d------~~~~~~L~~~Gad~v~~e 518 (621)
T PRK03562 477 TSLQLVELVKEHFPHLQIIARARD------VDHYIRLRQAGVEKPERE 518 (621)
T ss_pred HHHHHHHHHHHhCCCCeEEEEECC------HHHHHHHHHCCCCEEehh
Confidence 555555444443333344443322 133445666787776543
No 210
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.52 E-value=0.00031 Score=71.37 Aligned_cols=99 Identities=16% Similarity=0.233 Sum_probs=65.2
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CC-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAE-KG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~-~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.+++|||+|..+...+..++. .+ -+|.+|+|++++.++|.+..... ...+..++++++++++ +|+|+.|+|...
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~-~~~v~~~~~~~~av~~---aDii~taT~s~~ 204 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDL-GVPVVAVDSAEEAVRG---ADIIVTATPSTT 204 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCC-CTCEEEESSHHHHHTT---SSEEEE----SS
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccc-cccceeccchhhhccc---CCEEEEccCCCC
Confidence 479999999999998888765 33 37999999999999988765432 2357889999999988 999999998875
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChh
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~ 112 (503)
.. .+++ ...+++|..|+..++..|.
T Consensus 205 ~~-P~~~--~~~l~~g~hi~~iGs~~~~ 229 (313)
T PF02423_consen 205 PA-PVFD--AEWLKPGTHINAIGSYTPG 229 (313)
T ss_dssp EE-ESB---GGGS-TT-EEEE-S-SSTT
T ss_pred CC-cccc--HHHcCCCcEEEEecCCCCc
Confidence 10 1222 2367899999988876654
No 211
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.52 E-value=0.0004 Score=60.28 Aligned_cols=95 Identities=17% Similarity=0.245 Sum_probs=60.0
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCC-c-EEEEeCChhHHHHHHHhhcc-cCCCCeeeeC-CHHHHHhccCCCcEEEEecCC
Q 010702 8 RIGLAG-LAVMGQNLALNVAEKGF-P-ISVYNRTTSKVDETLDRAHR-EGQLPLTGHY-TPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~G~-~-V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~-s~~e~~~~l~~~dvIil~vp~ 82 (503)
||+||| .|.+|..|.+.|.++-+ + +.++.++.+.-..+...... .+...+...+ +.+++ .+ +|+||+|+|+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~Dvvf~a~~~ 76 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEEL-SD---VDVVFLALPH 76 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHH-TT---ESEEEE-SCH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHh-hc---CCEEEecCch
Confidence 699999 99999999999998643 4 55677776332223222110 0000122333 34444 44 9999999998
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+ ...+....+ +.+|..|||.|+..
T Consensus 77 ~-~~~~~~~~~---~~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 77 G-ASKELAPKL---LKAGIKVIDLSGDF 100 (121)
T ss_dssp H-HHHHHHHHH---HHTTSEEEESSSTT
T ss_pred h-HHHHHHHHH---hhCCcEEEeCCHHH
Confidence 5 556666665 45788999999875
No 212
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=97.52 E-value=0.0009 Score=59.80 Aligned_cols=99 Identities=16% Similarity=0.180 Sum_probs=61.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhc---ccCCCCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAH---REGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~---~~g~~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
|||+|||+ |.+|..+|..|...+. ++.++|+++++++....... ..-..+........+.+++ +|+|+++.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~---aDivvita 77 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKD---ADIVVITA 77 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTT---ESEEEETT
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccccccccccc---ccEEEEec
Confidence 58999999 9999999999999875 79999999876554432110 0000012222233333333 99999987
Q ss_pred CCC----h-----------hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 81 KAG----S-----------PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 81 p~~----~-----------~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
-.. . .++++...+.++- +..+++-.||-
T Consensus 78 g~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtNP 120 (141)
T PF00056_consen 78 GVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTNP 120 (141)
T ss_dssp STSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SSS
T ss_pred cccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCCc
Confidence 321 1 1334445666655 55677777664
No 213
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.51 E-value=0.0017 Score=62.63 Aligned_cols=190 Identities=17% Similarity=0.206 Sum_probs=112.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC----cEEEEeCChhHHHH-HHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF----PISVYNRTTSKVDE-TLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~----~V~v~dr~~~~~~~-l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
|+||+||.|.|...+++.+.+.|. ++..+-.+...... +... ++..+.+..+.++. +|+++++++
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~-------g~~~~~~n~~~~~~---s~v~~~svK 70 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEAL-------GVKTVFTNLEVLQA---SDVVFLSVK 70 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcC-------CceeeechHHHHhh---ccceeEeec
Confidence 589999999999999999999985 46666553222222 2322 23444444777776 999999999
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCCcccCCC---CHHHHHHH
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGG---SFEAYNNI 158 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~~i~~gg---~~~a~~~v 158 (503)
+ ..+..++.++.+.+..+++|+.+--+....+ +...+. ...+.+-. +.-.+.....|.+++.-| ..+..+.+
T Consensus 71 p-~~i~~vls~~~~~~~~~~iivS~aaG~tl~~--l~~~l~-~~~rviRv-mpNtp~~v~eg~sv~~~g~~~~~~D~~l~ 145 (267)
T KOG3124|consen 71 P-QVIESVLSEIKPKVSKGKIIVSVAAGKTLSS--LESKLS-PPTRVIRV-MPNTPSVVGEGASVYAIGCHATNEDLELV 145 (267)
T ss_pred c-hhHHHHhhcCccccccceEEEEEeecccHHH--HHHhcC-CCCceEEe-cCCChhhhhcCcEEEeeCCCcchhhHHHH
Confidence 8 4789999888887888999998876654333 233333 11222221 111223344555433322 45566888
Q ss_pred HHHHHHHhcccC-CCCcEE-EeCCcchhHHHHhHHHHHHHHHHHHHHHHHHH-HHHhCCCCHHHHHHH
Q 010702 159 RDILQKVAAQVD-DGPCVT-YIGEGGSGNFVKMVHNGIEYGDMQLISEAYDV-LKHVGGLSNAELAEI 223 (503)
Q Consensus 159 ~~ll~~ig~~~~-~~~~v~-~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l-~~~~g~~~~~~i~~~ 223 (503)
++++..+|-..+ .++++- +.|=.|+|-. ..-.+.|++.= .-+.| ++.+...+.
T Consensus 146 ~~ll~~vG~~~evpE~~iDavTgLsGSgPA-----------y~f~~ieaLadGgVkmG-lPr~lA~~l 201 (267)
T KOG3124|consen 146 EELLSAVGLCEEVPEKCIDAVTGLSGSGPA-----------YVFVAIEALADGGVKMG-LPRQLAYRL 201 (267)
T ss_pred HHHHHhcCcceeCcHHhhhHHhhccCCcHH-----------HHHHHHHHHhccccccC-CCHHHHHHH
Confidence 999999983221 112221 2233455543 11223344322 33566 887766665
No 214
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=97.50 E-value=0.0014 Score=72.57 Aligned_cols=113 Identities=14% Similarity=0.210 Sum_probs=78.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh--ccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~--~l~~~dvIil~vp~~~ 84 (503)
++|-|+|.|.+|+.+++.|.++|+++++.|.|+++++.+.+.+.. -+.+..+-.++.+ .++++|.++++++++.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~----v~~GDat~~~~L~~agi~~A~~vv~~~~d~~ 476 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYK----VYYGDATQLELLRAAGAEKAEAIVITCNEPE 476 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCe----EEEeeCCCHHHHHhcCCccCCEEEEEeCCHH
Confidence 579999999999999999999999999999999999988775432 1334444455553 3567999999999976
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEe
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (503)
....++..+....+.-.+++-..+ +...+.+.+.|+..+
T Consensus 477 ~n~~i~~~~r~~~p~~~IiaRa~~------~~~~~~L~~~Ga~~v 515 (601)
T PRK03659 477 DTMKIVELCQQHFPHLHILARARG------RVEAHELLQAGVTQF 515 (601)
T ss_pred HHHHHHHHHHHHCCCCeEEEEeCC------HHHHHHHHhCCCCEE
Confidence 555555555554433355543332 133445566676655
No 215
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.48 E-value=0.0017 Score=65.29 Aligned_cols=123 Identities=14% Similarity=0.176 Sum_probs=88.7
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHh---CCCcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEE
Q 010702 1 MEASALSRIGLAGLAVMGQNLALNVAE---KGFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSV 76 (503)
Q Consensus 1 M~~~~~~~IgIIGlG~mG~~lA~~L~~---~G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvI 76 (503)
|++++.-|+||+|+|.|++-+++.|.- .+|.| .+++|+.+++.++++...-. +.+.+.|.++++++ +..|+|
T Consensus 1 ~~~s~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~---~~k~y~syEeLakd-~~vDvV 76 (351)
T KOG2741|consen 1 VSDSATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIP---NPKAYGSYEELAKD-PEVDVV 76 (351)
T ss_pred CCCCceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCC---CCccccCHHHHhcC-CCcCEE
Confidence 566666789999999999999998863 35664 57899999999998765321 34678999999987 335999
Q ss_pred EEecCCChhHHHHHHHHHhcCCCCC-EEEec-CCCChhhHHHHHHHHHhcCccEecc
Q 010702 77 IILVKAGSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYLGM 131 (503)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~i~~ 131 (503)
.+..|.....+-+...+ ..|+ ++++- -.......+++.+.++.+|+.|++.
T Consensus 77 yi~~~~~qH~evv~l~l----~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg 129 (351)
T KOG2741|consen 77 YISTPNPQHYEVVMLAL----NKGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEG 129 (351)
T ss_pred EeCCCCccHHHHHHHHH----HcCCcEEecccccCCHHHHHHHHHHHHHcCcEEEee
Confidence 99999986655443332 2333 44442 2234567788888889999888765
No 216
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.45 E-value=0.00084 Score=68.92 Aligned_cols=99 Identities=12% Similarity=0.091 Sum_probs=72.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.+++|||+|..+...++.+..- --+|.+|+|++++.+++.+..... +..+..++++++++++ +|+|+.+++...
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~-~~~v~~~~~~~~av~~---ADIIvtaT~S~~ 205 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGP-GLRIVACRSVAEAVEG---ADIITTVTADKT 205 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhc-CCcEEEeCCHHHHHhc---CCEEEEecCCCC
Confidence 4699999999998887766642 247999999999998887654321 1246778999999998 999999997642
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChh
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~ 112 (503)
-..+++. ..+++|..|.-.++-.|.
T Consensus 206 -~~Pvl~~--~~lkpG~hV~aIGs~~p~ 230 (346)
T PRK07589 206 -NATILTD--DMVEPGMHINAVGGDCPG 230 (346)
T ss_pred -CCceecH--HHcCCCcEEEecCCCCCC
Confidence 1122321 356889988877766553
No 217
>PRK04148 hypothetical protein; Provisional
Probab=97.44 E-value=0.00097 Score=58.70 Aligned_cols=99 Identities=12% Similarity=0.081 Sum_probs=73.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|.+||+| -|..+|..|++.|++|++.|.++..++.+.+.+... ..-..++..-++-++ +|+|..+=|+. .+
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~--v~dDlf~p~~~~y~~---a~liysirpp~-el 90 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNA--FVDDLFNPNLEIYKN---AKLIYSIRPPR-DL 90 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeE--EECcCCCCCHHHHhc---CCEEEEeCCCH-HH
Confidence 579999999 999999999999999999999999988777654210 000112233355565 89999888875 67
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCChh
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWYL 112 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~ 112 (503)
..-+-++...+...-+|...|+..|.
T Consensus 91 ~~~~~~la~~~~~~~~i~~l~~e~~~ 116 (134)
T PRK04148 91 QPFILELAKKINVPLIIKPLSGEEPI 116 (134)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCC
Confidence 77777788878777788888877643
No 218
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=97.44 E-value=0.00066 Score=67.20 Aligned_cols=102 Identities=19% Similarity=0.214 Sum_probs=67.6
Q ss_pred EEEEcc-cHHHHHHHHHHHhCC----CcEEEEeCChhHHHHHHHhhc---ccC-CCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 9 IGLAGL-AVMGQNLALNVAEKG----FPISVYNRTTSKVDETLDRAH---REG-QLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 9 IgIIGl-G~mG~~lA~~L~~~G----~~V~v~dr~~~~~~~l~~~~~---~~g-~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
|+|||+ |.||..+|..|+..| .+|.+||+++++++....... ... ..+++.++++.+.+++ +|+||++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~---aDiVv~t 77 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKD---ADVVIIT 77 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCC---CCEEEEC
Confidence 689999 999999999999999 789999999876554432210 000 0145666676666666 9999996
Q ss_pred cCCC---------------hhHHHHHHHHHhcCCCCCEEEecCCCChhhH
Q 010702 80 VKAG---------------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (503)
Q Consensus 80 vp~~---------------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t 114 (503)
.-.+ ..++++.+.+.... +..++|..||-....+
T Consensus 78 ~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~tNP~d~~t 126 (263)
T cd00650 78 AGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVSNPVDIIT 126 (263)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHH
Confidence 5221 12444455666655 6677877776543333
No 219
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=97.42 E-value=0.0019 Score=65.69 Aligned_cols=101 Identities=12% Similarity=0.094 Sum_probs=62.6
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhcccC-C-CCeee-eCCHHHHHhccCCCcEEEEe
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREG-Q-LPLTG-HYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g-~-~~i~~-~~s~~e~~~~l~~~dvIil~ 79 (503)
..+||+|||+|.+|.++|..|+..|. ++.++|++.++++.....-.... . .++.. ..+.++ +++ +|+||++
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~-~~~---adivIit 80 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSD-CKD---ADLVVIT 80 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHH-hCC---CCEEEEe
Confidence 34689999999999999999999997 79999998876544432211000 0 01222 234444 344 9999997
Q ss_pred cCCCh---------------hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
.-.+. .++++++.+..+- +..+++..||-.
T Consensus 81 ag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~-~~~~vivvsNP~ 125 (315)
T PRK00066 81 AGAPQKPGETRLDLVEKNLKIFKSIVGEVMASG-FDGIFLVASNPV 125 (315)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCcH
Confidence 63211 1333444555544 456677777643
No 220
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.41 E-value=0.00055 Score=62.99 Aligned_cols=74 Identities=19% Similarity=0.333 Sum_probs=56.5
Q ss_pred CcEEEEcccHH-HHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVM-GQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~m-G~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||.|.| |..+|..|.+.|.+|++.+|+.+ ++.+.+.+ +|+||.+++.+.
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~---------------------~l~~~l~~---aDiVIsat~~~~- 99 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTK---------------------NLKEHTKQ---ADIVIVAVGKPG- 99 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCch---------------------hHHHHHhh---CCEEEEcCCCCc-
Confidence 58999999997 88899999999999999998742 22334444 999999998863
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
++.. ..++++.+|||.+...
T Consensus 100 ---ii~~--~~~~~~~viIDla~pr 119 (168)
T cd01080 100 ---LVKG--DMVKPGAVVIDVGINR 119 (168)
T ss_pred ---eecH--HHccCCeEEEEccCCC
Confidence 2311 1356789999998754
No 221
>PRK11579 putative oxidoreductase; Provisional
Probab=97.40 E-value=0.0023 Score=65.96 Aligned_cols=109 Identities=17% Similarity=0.183 Sum_probs=70.7
Q ss_pred CcEEEEcccHHHHH-HHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 7 SRIGLAGLAVMGQN-LALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 7 ~~IgIIGlG~mG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
.||||||+|.||.. .+..+... +.++. ++|+++++.. +... ....++++++++++ ++.|+|++|+|+.
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~---~~~~-----~~~~~~~~~ell~~-~~vD~V~I~tp~~ 75 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVK---ADWP-----TVTVVSEPQHLFND-PNIDLIVIPTPND 75 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHH---hhCC-----CCceeCCHHHHhcC-CCCCEEEEcCCcH
Confidence 58999999999984 56666553 67765 7899987643 1110 23567899999874 3479999999997
Q ss_pred hhHHHHHHHHHhcCCCCCEEE-ec-CCCChhhHHHHHHHHHhcCccE
Q 010702 84 SPVDQTIAALSEHMSPGDCII-DG-GNEWYLNTERRIHEASQKGLLY 128 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iII-d~-st~~~~~t~~~~~~l~~~gi~~ 128 (503)
...+.++.. +..|+-|+ +- -.....+.+++.+..++.|+.+
T Consensus 76 ~H~~~~~~a----l~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l 118 (346)
T PRK11579 76 THFPLAKAA----LEAGKHVVVDKPFTVTLSQARELDALAKSAGRVL 118 (346)
T ss_pred HHHHHHHHH----HHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEE
Confidence 665544443 34455554 31 1123345666666666666544
No 222
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.39 E-value=0.00059 Score=70.26 Aligned_cols=101 Identities=17% Similarity=0.115 Sum_probs=60.3
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 5 ALSRIGLAGL-AVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 5 ~~~~IgIIGl-G~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
||+||+|||+ |.+|..+++.|.++ ++++. +.++. +..+.+.+..............+.++. ..+++|+|++|+|
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~~~--~~~~vD~Vf~alP 77 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS-SAGKPLSDVHPHLRGLVDLVLEPLDPE--ILAGADVVFLALP 77 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc-ccCcchHHhCcccccccCceeecCCHH--HhcCCCEEEECCC
Confidence 4579999996 99999999999987 56765 45543 222222221110000000012333332 1234999999999
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCChh
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~ 112 (503)
++ ...+++..+. ..|..|||.|+..--
T Consensus 78 ~~-~~~~~v~~a~---~aG~~VID~S~~fR~ 104 (343)
T PRK00436 78 HG-VSMDLAPQLL---EAGVKVIDLSADFRL 104 (343)
T ss_pred cH-HHHHHHHHHH---hCCCEEEECCcccCC
Confidence 96 4454554443 368999999987643
No 223
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=97.38 E-value=0.00032 Score=60.56 Aligned_cols=104 Identities=13% Similarity=0.196 Sum_probs=71.8
Q ss_pred cEEEEc----ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 8 RIGLAG----LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 8 ~IgIIG----lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
+|+||| -+..|.-+..+|.++|++|+..|.....+ . +...+.+++|.-.. .|++++++|.
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i---------~---G~~~y~sl~e~p~~---iDlavv~~~~- 65 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI---------L---GIKCYPSLAEIPEP---IDLAVVCVPP- 65 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE---------T---TEE-BSSGGGCSST----SEEEE-S-H-
T ss_pred EEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE---------C---cEEeeccccCCCCC---CCEEEEEcCH-
Confidence 699999 68999999999999999999887665321 1 36778888883233 8999999998
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEeccc
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (503)
..+.++++++... ..+.+++..+ ...+++.+.+++.|+.+++..
T Consensus 66 ~~~~~~v~~~~~~-g~~~v~~~~g----~~~~~~~~~a~~~gi~vigp~ 109 (116)
T PF13380_consen 66 DKVPEIVDEAAAL-GVKAVWLQPG----AESEELIEAAREAGIRVIGPN 109 (116)
T ss_dssp HHHHHHHHHHHHH-T-SEEEE-TT----S--HHHHHHHHHTT-EEEESS
T ss_pred HHHHHHHHHHHHc-CCCEEEEEcc----hHHHHHHHHHHHcCCEEEeCC
Confidence 4788888888764 4566777666 345567777788899888643
No 224
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=97.37 E-value=0.00087 Score=66.81 Aligned_cols=105 Identities=12% Similarity=0.176 Sum_probs=83.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
+++||+|+|.+|+.+|.++..-|.+|..||.-... +...+. +++ ..+++|+... +|+|-+-+|-..+.
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~-~~~~a~-------gvq-~vsl~Eil~~---ADFitlH~PLtP~T 214 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPM-ALAEAF-------GVQ-LVSLEEILPK---ADFITLHVPLTPST 214 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcCceEEeecCCCch-HHHHhc-------cce-eeeHHHHHhh---cCEEEEccCCCcch
Confidence 46999999999999999999999999999754321 122222 233 4588888887 99999999988888
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHh
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ 123 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~ 123 (503)
+.++ ++.+..+++|..||+++.+..-+...+.+.+..
T Consensus 215 ~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~s 252 (406)
T KOG0068|consen 215 EKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDS 252 (406)
T ss_pred hhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhc
Confidence 8888 566677899999999999988888888777664
No 225
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.35 E-value=0.0019 Score=68.85 Aligned_cols=98 Identities=14% Similarity=0.234 Sum_probs=64.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeee-CCHHHHHhc-cCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH-YTPRDFVLS-IQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~-~s~~e~~~~-l~~~dvIil~vp~~~ 84 (503)
|+|.|+|+|.+|..++..|.+.|++|.++|+++++++.+.+..... -+... .+...+.+. ++.+|.||++++++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~---~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~- 76 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVR---TVVGNGSSPDVLREAGAEDADLLIAVTDSD- 76 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEE---EEEeCCCCHHHHHHcCCCcCCEEEEecCCh-
Confidence 5899999999999999999999999999999999988876521110 01111 223333222 45699999999885
Q ss_pred hHHHHHHHHHhcC-CCCCEEEecCC
Q 010702 85 PVDQTIAALSEHM-SPGDCIIDGGN 108 (503)
Q Consensus 85 ~v~~vl~~l~~~l-~~g~iIId~st 108 (503)
.....+......+ +...+|+...+
T Consensus 77 ~~n~~~~~~~r~~~~~~~ii~~~~~ 101 (453)
T PRK09496 77 ETNMVACQIAKSLFGAPTTIARVRN 101 (453)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEECC
Confidence 3444443333333 44456665443
No 226
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.32 E-value=0.00047 Score=72.59 Aligned_cols=73 Identities=15% Similarity=0.088 Sum_probs=55.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||+|.||..++..|+..|. +++++||++++.+.+.+..... .+...+++.+.+. .+|+||.|++.+..
T Consensus 182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~---~~~~~~~l~~~l~---~aDiVI~aT~a~~~ 255 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNA---SAHYLSELPQLIK---KADIIIAAVNVLEY 255 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCC---eEecHHHHHHHhc---cCCEEEECcCCCCe
Confidence 579999999999999999999996 6999999999998887753100 1222333344444 49999999987644
No 227
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.28 E-value=0.0099 Score=57.09 Aligned_cols=176 Identities=11% Similarity=0.147 Sum_probs=101.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCc-EEEEeCCh----------hHHHHHHHhhcccCCCCeee--eCCHHHHHhccCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTT----------SKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQR 72 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~-V~v~dr~~----------~~~~~l~~~~~~~g~~~i~~--~~s~~e~~~~l~~ 72 (503)
.++|+|.|+|++|+.+|+.|.+.|.. |.+.|.+. +.++...+.+... .... ..+.+++.. + +
T Consensus 23 g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~---~~~~~~~~~~~~l~~-~-~ 97 (217)
T cd05211 23 GLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSA---RVKVQDYFPGEAILG-L-D 97 (217)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCcc---ccCcccccCccccee-c-c
Confidence 36899999999999999999999885 56789887 6555444432111 0100 112234433 2 5
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCCcccCCCCH
Q 010702 73 PRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSF 152 (503)
Q Consensus 73 ~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~~i~~gg~~ 152 (503)
||+++.|.+.+....+.... + +=++|+...|.... .+..+.|.++|+.|+.--+.. .|..+.
T Consensus 98 ~DVlipaA~~~~i~~~~a~~----l-~a~~V~e~AN~p~t--~~a~~~L~~~Gi~v~Pd~~~N------aGGvi~----- 159 (217)
T cd05211 98 VDIFAPCALGNVIDLENAKK----L-KAKVVAEGANNPTT--DEALRILHERGIVVAPDIVAN------AGGVIV----- 159 (217)
T ss_pred ccEEeeccccCccChhhHhh----c-CccEEEeCCCCCCC--HHHHHHHHHCCcEEEChHHhc------CCCeEe-----
Confidence 99999998876332333333 3 24678877776533 366778899998776432211 111110
Q ss_pred HHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010702 153 EAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIF 224 (503)
Q Consensus 153 ~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~ 224 (503)
..++.. +.. ...++- -.-+.+.+...+...+.+.+..+++.+ +++.+...++
T Consensus 160 s~~E~~----q~~-------~~~~w~--------~~~v~~~l~~~m~~~~~~v~~~a~~~~-~~~r~aA~~~ 211 (217)
T cd05211 160 SYFEWV----QNL-------QRLSWD--------AEEVRSKLEQVMTDIHNGVFAISERDG-VTMRAAANIL 211 (217)
T ss_pred EHHHhc----CCc-------cccCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHC-cCHHHHHHHH
Confidence 111111 100 111221 122344455556677788889999988 8887766554
No 228
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=0.0011 Score=62.82 Aligned_cols=189 Identities=12% Similarity=0.125 Sum_probs=108.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+.+|+||.|..|.....+....++... +..|+++..+.+.+.. ...+.++....+..+++|..+|+. .
T Consensus 11 v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~----------~a~p~d~~~~ael~~~vfv~vpd~-~ 79 (289)
T COG5495 11 VVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNLAETY----------VAPPLDVAKSAELLLLVFVDVPDA-L 79 (289)
T ss_pred eEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhchhcc----------CCCccchhhChhhhceEEecchHH-H
Confidence 579999999999997766666666654 4478888877765532 223333333322257788888774 3
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec----ccCCCChhhhh--cCCccc-CCCCHHHHHHH
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG----MGVSGGEEGAR--HGPSLM-PGGSFEAYNNI 158 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~----~pvsgg~~~a~--~G~~i~-~gg~~~a~~~v 158 (503)
+-.+...- .-.+|++|++||...-. .+.+.+...|.--.. +-.+|.++... .++.+. ..+|+--+..+
T Consensus 80 ~s~vaa~~--~~rpg~iv~HcSga~~~---~il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~g~ai~ 154 (289)
T COG5495 80 YSGVAATS--LNRPGTIVAHCSGANGS---GILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFGITEADDVGYAIV 154 (289)
T ss_pred HHHHHHhc--ccCCCeEEEEccCCCch---hhhhhhhhcCCcceeecccccccCCHHHHHhCcccEEEeecccccccHHH
Confidence 33333222 24589999999886533 334444444432211 13455555443 333332 35677778888
Q ss_pred HHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 010702 159 RDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAE 219 (503)
Q Consensus 159 ~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~ 219 (503)
+.+...+|.+ .+-+-+ +.=-.--...|--..-...++.|+..+.+..| .|..+
T Consensus 155 q~la~emgg~------~f~V~~-~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag-~Dq~e 207 (289)
T COG5495 155 QSLALEMGGE------PFCVRE-EARILYHAAAVHASNFIVTVLADALEIYRAAG-DDQPE 207 (289)
T ss_pred HHHHHHhCCC------ceeech-hHHHHHHHHHHHhhccHHHHHHHHHHHHHHhc-CCCcc
Confidence 9999999954 222222 11100011111222224677889999999998 87444
No 229
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.26 E-value=0.0032 Score=63.95 Aligned_cols=99 Identities=15% Similarity=0.208 Sum_probs=63.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhcc----cCCCCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHR----EGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~----~g~~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
+||+|||+|.+|.++|..|+..|. ++.++|+++++++........ .....+..+.+++++ ++ +|+||++.
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~~-~~---adivvita 79 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVT-AN---SKVVIVTA 79 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHHh-CC---CCEEEECC
Confidence 589999999999999999998885 699999988765433221100 000024444677763 44 99999975
Q ss_pred CC----Ch-----------hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 81 KA----GS-----------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 81 p~----~~-----------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
-. +. .++++.+.+..+ .+..++|..||-.
T Consensus 80 G~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP~ 123 (312)
T cd05293 80 GARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVSNPV 123 (312)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEccChH
Confidence 32 11 133344555555 4667777777643
No 230
>PRK06199 ornithine cyclodeaminase; Validated
Probab=97.23 E-value=0.0014 Score=68.27 Aligned_cols=97 Identities=16% Similarity=0.192 Sum_probs=69.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--C-CcEEEEeCChhHHHHHHHhhccc-CCC-CeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK--G-FPISVYNRTTSKVDETLDRAHRE-GQL-PLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~--G-~~V~v~dr~~~~~~~l~~~~~~~-g~~-~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
.+++|||+|.++......++.- . -+|.+|||++++.+++.++.... ++. .+..++++++++++ +|+|+.|++
T Consensus 156 ~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~---ADIVvtaT~ 232 (379)
T PRK06199 156 KVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRG---SDIVTYCNS 232 (379)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcC---CCEEEEccC
Confidence 4799999999999999888763 2 37999999999998887654321 001 26778999999988 999999987
Q ss_pred CChh---HHHHHHHHHhcCCCCCEEEecCC
Q 010702 82 AGSP---VDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 82 ~~~~---v~~vl~~l~~~l~~g~iIId~st 108 (503)
.... ...+++ ..++++|..|+..+.
T Consensus 233 s~~~~~s~~Pv~~--~~~lkpG~hv~~ig~ 260 (379)
T PRK06199 233 GETGDPSTYPYVK--REWVKPGAFLLMPAA 260 (379)
T ss_pred CCCCCCCcCcEec--HHHcCCCcEEecCCc
Confidence 5320 112332 135678888865443
No 231
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=97.23 E-value=0.0012 Score=65.24 Aligned_cols=97 Identities=19% Similarity=0.238 Sum_probs=74.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCe-eeeCCHHHHHhccCCCcEEEEec--CCC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIILV--KAG 83 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i-~~~~s~~e~~~~l~~~dvIil~v--p~~ 83 (503)
.||.|||-|.+|..-|+-..-.|-+|++.|+|.+++..+-..... ++ ...+++..+.+.++++|+||-+| |..
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~----rv~~~~st~~~iee~v~~aDlvIgaVLIpga 244 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGG----RVHTLYSTPSNIEEAVKKADLVIGAVLIPGA 244 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCc----eeEEEEcCHHHHHHHhhhccEEEEEEEecCC
Confidence 479999999999999999999999999999999988777654321 22 34567777767777799999876 433
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGG 107 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~s 107 (503)
++=+-+.+++...+.||.+|||..
T Consensus 245 kaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 245 KAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred CCceehhHHHHHhcCCCcEEEEEE
Confidence 333344578888899999999863
No 232
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=97.23 E-value=0.0031 Score=63.72 Aligned_cols=97 Identities=15% Similarity=0.110 Sum_probs=62.7
Q ss_pred EEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHhhccc----CCCCeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 9 IGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDETLDRAHRE----GQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 9 IgIIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~----g~~~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
|+|||+|.+|.++|..|+..| .++.++|+++++++.....-... ...++....+.+ .+++ +|+||++...
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~-~l~~---aDiVIitag~ 76 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYA-DAAD---ADIVVITAGA 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHH-HhCC---CCEEEEcCCC
Confidence 689999999999999999998 57999999988766554321110 000233334444 3333 9999999854
Q ss_pred Ch---------------hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 83 GS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 83 ~~---------------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+. .++++...+.++. +..+||..||-.
T Consensus 77 p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~sNP~ 118 (300)
T cd00300 77 PRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVSNPV 118 (300)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccChH
Confidence 21 1334445555555 666777777643
No 233
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.20 E-value=0.0027 Score=60.20 Aligned_cols=33 Identities=24% Similarity=0.507 Sum_probs=30.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRT 38 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~ 38 (503)
..+|+|||+|.||+.+|.+|++.|+ +++++|.+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3589999999999999999999999 69999999
No 234
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=97.20 E-value=0.00073 Score=62.24 Aligned_cols=98 Identities=16% Similarity=0.151 Sum_probs=64.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee--------------------eCCHHHH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG--------------------HYTPRDF 66 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~--------------------~~s~~e~ 66 (503)
.+|.|+|.|+.|.+-+..|...|++|+++|.++++.+++....... +.. ......+
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 96 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYF----IEVDYEDHLERKDFDKADYYEHPESYESNF 96 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEE----SEETTTTTTTSB-CCHHHCHHHCCHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCce----EEEcccccccccccchhhhhHHHHHhHHHH
Confidence 5799999999999999999999999999999998887766543321 111 1111122
Q ss_pred HhccCCCcEEEEecC-CChhHHHHH-HHHHhcCCCCCEEEecCC
Q 010702 67 VLSIQRPRSVIILVK-AGSPVDQTI-AALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 67 ~~~l~~~dvIil~vp-~~~~v~~vl-~~l~~~l~~g~iIId~st 108 (503)
.+.++.+|+||.++- .+.....++ ++.+..+.++.+|+|.|-
T Consensus 97 ~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~ 140 (168)
T PF01262_consen 97 AEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISC 140 (168)
T ss_dssp HHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTG
T ss_pred HHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEe
Confidence 233334899997542 222333333 666677889999999875
No 235
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.17 E-value=0.0017 Score=59.62 Aligned_cols=72 Identities=15% Similarity=0.230 Sum_probs=52.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
|||+|||+ |..|+.|+.-..+.||+|+.+-||++++..+....... -. .-+++.+.+.|..-|+||.+....
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q----~D-ifd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQ----KD-IFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeec----cc-ccChhhhHhhhcCCceEEEeccCC
Confidence 68999996 99999999999999999999999999876542111000 01 124555555566689999998544
No 236
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=97.17 E-value=0.01 Score=51.47 Aligned_cols=102 Identities=17% Similarity=0.230 Sum_probs=74.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHH--HHhcCCCCCCCcch
Q 010702 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKK--AYQRNPNLASLVVD 403 (503)
Q Consensus 326 ~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~--~~~~~~~~~~ll~~ 403 (503)
|+++-.|.++|-+.++.++.++|++.+-++. ++|.+++.++-+.| --.|+.++.... ++.++.+
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~------Gld~~~~~~vl~~~-~~~s~~~~~~~~~~~~~~~~~------- 66 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKA------GLDPEQLLDVLSAG-SGGSWMLKNRAPRMILNGDFD------- 66 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TS-HHHHHHHHHTS-TTHBHHHHHHHHHHHHTTTTC-------
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHccC-CcCchHHHhhhhhhhhcccCC-------
Confidence 4577899999999999999999999998853 39999999999877 457888776544 3333222
Q ss_pred hhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 010702 404 PEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDT 443 (503)
Q Consensus 404 ~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~ 443 (503)
+.|. ++-...+++-++..|-+.|+|+|..+.+.++|..
T Consensus 67 ~~f~--l~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~ 104 (122)
T PF14833_consen 67 PGFS--LDLARKDLRLALDLAKEAGVPLPLGSAARQLYQA 104 (122)
T ss_dssp SSSB--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHH
T ss_pred ccch--hHhhccHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 1221 2234456788999999999999999999987753
No 237
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=97.15 E-value=0.0016 Score=67.04 Aligned_cols=97 Identities=13% Similarity=0.181 Sum_probs=60.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcc-cCCCCeee-eCCHHHHHhccCCCcEEEEecC
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHR-EGQLPLTG-HYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~-~g~~~i~~-~~s~~e~~~~l~~~dvIil~vp 81 (503)
+||+|||+ |.+|..+++.|.++ ++++. +++++...-+.+.+.... .+...... ..+.+++.++ +|+||+|+|
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~DvVf~alP 77 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAED---ADVVFLALP 77 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcC---CCEEEECCC
Confidence 48999998 99999999999987 56777 556554222222211110 00000111 1245555544 999999999
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
++ ...+.+..+. ..|..|||.|+..
T Consensus 78 ~~-~s~~~~~~~~---~~G~~VIDlS~~f 102 (346)
T TIGR01850 78 HG-VSAELAPELL---AAGVKVIDLSADF 102 (346)
T ss_pred ch-HHHHHHHHHH---hCCCEEEeCChhh
Confidence 96 4455555554 3689999999865
No 238
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.12 E-value=0.0034 Score=60.72 Aligned_cols=115 Identities=12% Similarity=0.098 Sum_probs=76.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEE-EEeC----------ChhHHHHHHHhhcccCCC-CeeeeCCHHHHHhccCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPIS-VYNR----------TTSKVDETLDRAHREGQL-PLTGHYTPRDFVLSIQRP 73 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~-v~dr----------~~~~~~~l~~~~~~~g~~-~i~~~~s~~e~~~~l~~~ 73 (503)
.++|+|.|.|.+|+.+|+.|.+.|.+|+ +.|. +.+.+.+..+.......+ ... .-+.+++... +|
T Consensus 31 ~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~-~~~~~~i~~~--~~ 107 (227)
T cd01076 31 GARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAE-RITNEELLEL--DC 107 (227)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCce-ecCCccceee--cc
Confidence 4689999999999999999999999988 6677 666655554432110000 001 1133444332 48
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 74 RSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 74 dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
|+++-|.+.+....+.+..+. =.+|+...|... +.+..+.|.++|+.|+.
T Consensus 108 Dvlip~a~~~~i~~~~~~~l~-----a~~I~egAN~~~--t~~a~~~L~~rGi~~~P 157 (227)
T cd01076 108 DILIPAALENQITADNADRIK-----AKIIVEAANGPT--TPEADEILHERGVLVVP 157 (227)
T ss_pred cEEEecCccCccCHHHHhhce-----eeEEEeCCCCCC--CHHHHHHHHHCCCEEEC
Confidence 999999887654444444442 467888888764 36677889999998874
No 239
>PRK15076 alpha-galactosidase; Provisional
Probab=97.12 E-value=0.0028 Score=67.19 Aligned_cols=75 Identities=15% Similarity=0.234 Sum_probs=51.3
Q ss_pred CCcEEEEcccHHHHHHHH--HHH----hCCCcEEEEeCChhHHHHHH---Hhhcc-cC-CCCeeeeCCHHHHHhccCCCc
Q 010702 6 LSRIGLAGLAVMGQNLAL--NVA----EKGFPISVYNRTTSKVDETL---DRAHR-EG-QLPLTGHYTPRDFVLSIQRPR 74 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~--~L~----~~G~~V~v~dr~~~~~~~l~---~~~~~-~g-~~~i~~~~s~~e~~~~l~~~d 74 (503)
|+||+|||.|.||.+.+. .++ -.|.+|.++|+++++.+... +.... .+ ..++..+++..+++++ +|
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~d---AD 77 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQG---AD 77 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCC---CC
Confidence 368999999999977665 554 23568999999998765322 11110 00 1246667787777776 99
Q ss_pred EEEEecCCC
Q 010702 75 SVIILVKAG 83 (503)
Q Consensus 75 vIil~vp~~ 83 (503)
+||+++..+
T Consensus 78 fVv~ti~vg 86 (431)
T PRK15076 78 YVINAIQVG 86 (431)
T ss_pred EEeEeeeeC
Confidence 999998654
No 240
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=97.09 E-value=0.0045 Score=61.81 Aligned_cols=93 Identities=10% Similarity=0.068 Sum_probs=63.8
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CCCcEE-EEeCChhHHH-HHHHhhcccCCCCe-eeeCCHHHHHhccCCCcEEEEecCC
Q 010702 7 SRIGLAGLAVMGQNLALNVAE-KGFPIS-VYNRTTSKVD-ETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~-~G~~V~-v~dr~~~~~~-~l~~~~~~~g~~~i-~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
.+|||||+|.||..++..+.+ .++++. ++|+++++.. ++.+.. ++ ..+.+.+++++. ++.|+|++++|+
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~------Gi~~~~~~~e~ll~~-~dIDaV~iaTp~ 74 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARAREL------GVKTSAEGVDGLLAN-PDIDIVFDATSA 74 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHC------CCCEEECCHHHHhcC-CCCCEEEECCCc
Confidence 589999999999999888775 356655 6899887633 233221 22 345678888864 347999999998
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
..+.+. .. ..+..|..|+|.+...
T Consensus 75 ~~H~e~-a~---~al~aGk~VIdekPa~ 98 (285)
T TIGR03215 75 KAHARH-AR---LLAELGKIVIDLTPAA 98 (285)
T ss_pred HHHHHH-HH---HHHHcCCEEEECCccc
Confidence 744332 22 2345789999987654
No 241
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=97.08 E-value=0.0028 Score=64.27 Aligned_cols=103 Identities=19% Similarity=0.186 Sum_probs=61.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCc--EEEEeCCh--hHHHHHH----HhhcccC-CCCeeeeCCHHHHHhccCCCcEE
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFP--ISVYNRTT--SKVDETL----DRAHREG-QLPLTGHYTPRDFVLSIQRPRSV 76 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~--V~v~dr~~--~~~~~l~----~~~~~~g-~~~i~~~~s~~e~~~~l~~~dvI 76 (503)
|||+|||+ |.+|..++..|+..|+. |.++||++ ++++... +.....+ ..++....+.++ +.+ +|+|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~-l~~---aDiV 76 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSD-VAG---SDIV 76 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHHH-hCC---CCEE
Confidence 58999997 99999999999999874 99999965 3332111 1000000 002333445444 444 9999
Q ss_pred EEecCCC---------------hhHHHHHHHHHhcCCCCCEEEecCCCChhhH
Q 010702 77 IILVKAG---------------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (503)
Q Consensus 77 il~vp~~---------------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t 114 (503)
|+++..+ ..++++...+.+..+ ..+||..+|..+..+
T Consensus 77 iitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~~npvd~~t 128 (309)
T cd05294 77 IITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVVTNPVDVMT 128 (309)
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCchHHHH
Confidence 9998521 113344455666554 445555555444344
No 242
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=97.07 E-value=0.03 Score=54.54 Aligned_cols=147 Identities=14% Similarity=0.102 Sum_probs=99.3
Q ss_pred CeeeeCCHHHHHhccCCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCcc---Eeccc
Q 010702 56 PLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL---YLGMG 132 (503)
Q Consensus 56 ~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~---~i~~p 132 (503)
++...++-.|+++. +|++|+-+|-+...-.+++.+++++++|.||.+..|.++....+..+.+..+.+. |-.+.
T Consensus 128 GvkVtsDD~EAvk~---aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaa 204 (342)
T PRK00961 128 GLKVTTDDREAVAD---ADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHACTIPTTKFAKIFKDLGRDDLNVTSYHPGA 204 (342)
T ss_pred CceEecCcHHHhcC---CCEEEEecCCCCCchHHHHHHHhhCCCCCEEeccccCCHHHHHHHHHHhCcccCCeeccCCCC
Confidence 56677777788877 9999999999987788999999999999999999999887766666665544332 22223
Q ss_pred CCCChhhhhcCCcccCC--CCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 010702 133 VSGGEEGARHGPSLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLK 210 (503)
Q Consensus 133 vsgg~~~a~~G~~i~~g--g~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~ 210 (503)
|-|.+ |.++..- .+++..+++.++.+..+ +..+.+-..=.+...-|. ..+.+...+.+.+-+....
T Consensus 205 VPgt~-----Gq~~i~egyAtEEqI~klveL~~sa~------k~ay~~PA~lvspV~DMg-S~VTAv~~aGiL~Y~~~~t 272 (342)
T PRK00961 205 VPEMK-----GQVYIAEGYADEEAVEKLYEIGKKAR------GNAFKMPANLIGPVCDMC-SAVTAIVYAGILAYRDAVT 272 (342)
T ss_pred CCCCC-----CceecccccCCHHHHHHHHHHHHHhC------CCeeecchhhcchhhhHH-HHHHHHHHHHHHHHHHHHH
Confidence 33332 4433322 38889999999999998 666665443333333343 2334445566666666666
Q ss_pred HhCCCCH
Q 010702 211 HVGGLSN 217 (503)
Q Consensus 211 ~~g~~~~ 217 (503)
+..|.+.
T Consensus 273 qIlgAP~ 279 (342)
T PRK00961 273 QILGAPA 279 (342)
T ss_pred HHhcCcH
Confidence 6654443
No 243
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=97.05 E-value=0.0056 Score=61.44 Aligned_cols=95 Identities=13% Similarity=0.080 Sum_probs=64.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHH-HHHHhhcccCCCCeee-eCCHHHHHhc--cCCCcEEEEe
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVD-ETLDRAHREGQLPLTG-HYTPRDFVLS--IQRPRSVIIL 79 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~-~l~~~~~~~g~~~i~~-~~s~~e~~~~--l~~~dvIil~ 79 (503)
+.||||||+|.+|..+...+.+. +.++. ++|+++++.. ...++. ++.. +.+.+++++. +++.|+|+.+
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~------Gi~~~~~~ie~LL~~~~~~dIDiVf~A 77 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRL------GVATSAEGIDGLLAMPEFDDIDIVFDA 77 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHc------CCCcccCCHHHHHhCcCCCCCCEEEEC
Confidence 35899999999999988888764 45654 7899886432 222221 2333 4688888863 3558999999
Q ss_pred cCCChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+|... -.+....+ +..|..|||.+...
T Consensus 78 T~a~~-H~e~a~~a---~eaGk~VID~sPA~ 104 (302)
T PRK08300 78 TSAGA-HVRHAAKL---REAGIRAIDLTPAA 104 (302)
T ss_pred CCHHH-HHHHHHHH---HHcCCeEEECCccc
Confidence 98853 33333333 45789999988754
No 244
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.03 E-value=0.0089 Score=63.75 Aligned_cols=114 Identities=14% Similarity=0.212 Sum_probs=73.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCe-eee-CCHHHHH-hccCCCcEEEEecCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPL-TGH-YTPRDFV-LSIQRPRSVIILVKA 82 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i-~~~-~s~~e~~-~~l~~~dvIil~vp~ 82 (503)
+++|-|+|+|.+|..+++.|.+.|++|+++|+++++.+.+.+.+... .+ ... .+.+.+. ..++++|.|+++.++
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~---~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~ 307 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNT---LVLHGDGTDQELLEEEGIDEADAFIALTND 307 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCC---eEEECCCCCHHHHHhcCCccCCEEEECCCC
Confidence 46799999999999999999999999999999999988887653110 11 111 2333331 245569999988887
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEe
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (503)
+ ...-.+..+...+....+|+-..+... ...+...|+.++
T Consensus 308 ~-~~n~~~~~~~~~~~~~~ii~~~~~~~~------~~~~~~~g~~~v 347 (453)
T PRK09496 308 D-EANILSSLLAKRLGAKKVIALVNRPAY------VDLVEGLGIDIA 347 (453)
T ss_pred c-HHHHHHHHHHHHhCCCeEEEEECCcch------HHHHHhcCCCEE
Confidence 5 333333334444555566665554322 233455576655
No 245
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=97.02 E-value=0.031 Score=54.60 Aligned_cols=150 Identities=13% Similarity=0.104 Sum_probs=98.4
Q ss_pred CeeeeCCHHHHHhccCCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 56 PLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 56 ~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
++...++-.|+++. +|++|+-+|-+...-.+++.+++++++|.||.+..|..+....+..+.+..+.+...... -+
T Consensus 126 GvkVtsDD~EAv~~---aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~tCTIpt~~ly~ilE~l~R~DvgVsS~H-Pa 201 (340)
T TIGR01723 126 GLKVTTDDREAVED---ADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHACTIPTTKFAKIFEDLGREDLNVTSYH-PG 201 (340)
T ss_pred CceEecCcHHHhcC---CCEEEEEcCCCCCchHHHHHHHhhCCCCCEEeccccCChHHHHHHHHhhCcccCCeeccC-CC
Confidence 56677777788887 999999999998778899999999999999999999988766666665544433222211 12
Q ss_pred ChhhhhcCC-cccCC-CCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhC
Q 010702 136 GEEGARHGP-SLMPG-GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVG 213 (503)
Q Consensus 136 g~~~a~~G~-~i~~g-g~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g 213 (503)
+.++.. |. .+.-| .+++..+++.++.+..+ +..+.+...=.+...-|. ..+.+...+.+.+-+....+..
T Consensus 202 aVPgt~-~q~Yi~egyAtEEqI~klveL~~sa~------k~ay~~PA~LvspV~DMg-S~VTAv~~aGiL~Y~~~~t~Il 273 (340)
T TIGR01723 202 CVPEMK-GQVYIAEGYASEEAVNKLYELGKKAR------GKAFKMPANLLGPVCDMC-SAVTAIVYAGLLAYRDAVTKIL 273 (340)
T ss_pred CCCCCC-CceEeecccCCHHHHHHHHHHHHHhC------CCeeecchhhccchhhHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 223333 33 33222 38889999999999998 566655433333333333 2333445566666666666655
Q ss_pred CCCH
Q 010702 214 GLSN 217 (503)
Q Consensus 214 ~~~~ 217 (503)
|.+.
T Consensus 274 gAP~ 277 (340)
T TIGR01723 274 GAPA 277 (340)
T ss_pred cCcH
Confidence 4443
No 246
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=97.00 E-value=0.0031 Score=67.67 Aligned_cols=100 Identities=13% Similarity=0.145 Sum_probs=66.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhccc--------C--CCCeeeeCCHH-------HHHhc
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE--------G--QLPLTGHYTPR-------DFVLS 69 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~--------g--~~~i~~~~s~~-------e~~~~ 69 (503)
.++.|+|+|.+|...+..+...|..|.++|+++++.+.+...+... | ..+.....+.+ .+.+.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~ 244 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQ 244 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999877666543211 0 00000000101 02333
Q ss_pred cCCCcEEEEec-----CCChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 70 IQRPRSVIILV-----KAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 70 l~~~dvIil~v-----p~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
++++|+||.++ |.+ +-+.++....+++|.+|||.+..
T Consensus 245 ~~~~DIVI~TalipG~~aP---~Lit~emv~~MKpGsvIVDlA~d 286 (511)
T TIGR00561 245 AKEVDIIITTALIPGKPAP---KLITEEMVDSMKAGSVIVDLAAE 286 (511)
T ss_pred hCCCCEEEECcccCCCCCC---eeehHHHHhhCCCCCEEEEeeeC
Confidence 45689998887 332 11235566778889999998763
No 247
>PRK06349 homoserine dehydrogenase; Provisional
Probab=97.00 E-value=0.0032 Score=66.75 Aligned_cols=119 Identities=19% Similarity=0.275 Sum_probs=72.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--------C--Cc-EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcE
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK--------G--FP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRS 75 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~--------G--~~-V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dv 75 (503)
.+|||||+|.||+.++..|.++ | .+ +.++||++++...+. . . ....++++++++++ .+.|+
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~-~---~---~~~~~~d~~~ll~d-~~iDv 75 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVD-L---P---GILLTTDPEELVND-PDIDI 75 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCC-C---c---ccceeCCHHHHhhC-CCCCE
Confidence 5899999999999999887654 3 34 447799877643211 0 0 23467889999864 23799
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCCCEEEecCCC-ChhhHHHHHHHHHhcCccE-ecccCCCC
Q 010702 76 VIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNE-WYLNTERRIHEASQKGLLY-LGMGVSGG 136 (503)
Q Consensus 76 Iil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~-~~~~t~~~~~~l~~~gi~~-i~~pvsgg 136 (503)
|+.+++......+.+ ...|..|.-|+..... ......++.+..+++|+.| +++.+.||
T Consensus 76 Vve~tg~~~~~~~~~---~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~fEasV~gg 135 (426)
T PRK06349 76 VVELMGGIEPARELI---LKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLYFEAAVAGG 135 (426)
T ss_pred EEECCCCchHHHHHH---HHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEEEEEEeecc
Confidence 999987643333333 3445678777754321 1122334455555667754 34555554
No 248
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.00 E-value=0.0048 Score=59.68 Aligned_cols=106 Identities=18% Similarity=0.161 Sum_probs=68.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCc---EEEEeCC----hhHH-------HHHHHhhcccCCCCeeeeCCHHHHHhccCC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFP---ISVYNRT----TSKV-------DETLDRAHREGQLPLTGHYTPRDFVLSIQR 72 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~---V~v~dr~----~~~~-------~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~ 72 (503)
++|-|+|+|.+|.++|..|.+.|.. |+++||+ .++. .++.+..... ....++.+.+..
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~-----~~~~~l~~~l~~--- 97 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPE-----KTGGTLKEALKG--- 97 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccC-----cccCCHHHHHhc---
Confidence 5899999999999999999999974 9999999 4432 2233221000 111256566655
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 73 PRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 73 ~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
+|+||-++|.+....++++ .+.++.+|++.+|-.+ +...+...+.|..
T Consensus 98 ~dvlIgaT~~G~~~~~~l~----~m~~~~ivf~lsnP~~---e~~~~~A~~~ga~ 145 (226)
T cd05311 98 ADVFIGVSRPGVVKKEMIK----KMAKDPIVFALANPVP---EIWPEEAKEAGAD 145 (226)
T ss_pred CCEEEeCCCCCCCCHHHHH----hhCCCCEEEEeCCCCC---cCCHHHHHHcCCc
Confidence 9999999986543333333 3446788889885443 2344444445554
No 249
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.95 E-value=0.0027 Score=64.12 Aligned_cols=102 Identities=16% Similarity=0.203 Sum_probs=61.3
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhccc-CCCCeee-eCCHHHHHhccCCCcEEEEec
Q 010702 5 ALSRIGLAGL-AVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHRE-GQLPLTG-HYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 5 ~~~~IgIIGl-G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~-g~~~i~~-~~s~~e~~~~l~~~dvIil~v 80 (503)
+|+||+|||. |.-|..|.+.|+.+.. ++..+..+..+-+.+.+...+. |...... ..+++++ ....||+||+|+
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~--~~~~~DvvFlal 78 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKI--ELDECDVVFLAL 78 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhh--hcccCCEEEEec
Confidence 4679999995 9999999999998753 6666654442222333322111 0000111 1133333 223489999999
Q ss_pred CCChhHHHHHHHHHhcCCCCCEEEecCCCChh
Q 010702 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (503)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~~~ 112 (503)
|++ ...+.+..+. .+|..|||+|+.+--
T Consensus 79 Phg-~s~~~v~~l~---~~g~~VIDLSadfR~ 106 (349)
T COG0002 79 PHG-VSAELVPELL---EAGCKVIDLSADFRL 106 (349)
T ss_pred Cch-hHHHHHHHHH---hCCCeEEECCccccc
Confidence 997 4444544443 367779999987543
No 250
>PRK10206 putative oxidoreductase; Provisional
Probab=96.95 E-value=0.0081 Score=61.91 Aligned_cols=112 Identities=13% Similarity=0.122 Sum_probs=71.0
Q ss_pred CcEEEEcccHHHH-HHHHHHHh--CCCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 7 SRIGLAGLAVMGQ-NLALNVAE--KGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 7 ~~IgIIGlG~mG~-~lA~~L~~--~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
.||||||+|.++. ..+..+.. .+++|. ++|+++++. ++.+... .+..+++.++++++ .+.|+|++++|+
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~-~~~~~~~-----~~~~~~~~~ell~~-~~iD~V~I~tp~ 74 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQAPIYS-----HIHFTSDLDEVLND-PDVKLVVVCTHA 74 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH-HHHHhcC-----CCcccCCHHHHhcC-CCCCEEEEeCCc
Confidence 5899999999775 34454533 356764 789997654 4443321 24567899999874 347999999999
Q ss_pred ChhHHHHHHHHHhcCCCCC-EEEec-CCCChhhHHHHHHHHHhcCccEe
Q 010702 83 GSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~i 129 (503)
....+-++..+ ..|+ ++++- -.....+.+++.+..+++|+.+.
T Consensus 75 ~~H~~~~~~al----~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~ 119 (344)
T PRK10206 75 DSHFEYAKRAL----EAGKNVLVEKPFTPTLAEAKELFALAKSKGLTVT 119 (344)
T ss_pred hHHHHHHHHHH----HcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEEE
Confidence 86655554443 3444 45441 11234566777777777776543
No 251
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=96.95 E-value=0.0074 Score=62.06 Aligned_cols=97 Identities=15% Similarity=0.121 Sum_probs=60.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHhh-cc-----------cCCCCeeeeCCHHHHHhccC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRA-HR-----------EGQLPLTGHYTPRDFVLSIQ 71 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~-~~-----------~g~~~i~~~~s~~e~~~~l~ 71 (503)
|+||||+|+|.||+.+++.+.++ +++|. ++|++++....+.+.. .. .+..++....+++++...
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~-- 78 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEK-- 78 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhcc--
Confidence 46899999999999999988864 56655 5677766555544421 00 000024445566666654
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 72 RPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 72 ~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+|+|+.|.|.. ...+.... ++..|..+|+.+..
T Consensus 79 -vDVVIdaT~~~-~~~e~a~~---~~~aGk~VI~~~~~ 111 (341)
T PRK04207 79 -ADIVVDATPGG-VGAKNKEL---YEKAGVKAIFQGGE 111 (341)
T ss_pred -CCEEEECCCch-hhHHHHHH---HHHCCCEEEEcCCC
Confidence 88888888775 33333332 33456777777664
No 252
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=96.93 E-value=0.0043 Score=50.35 Aligned_cols=62 Identities=21% Similarity=0.381 Sum_probs=46.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhC-CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK-GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++++|+|.|.+|..++..|.+. +.+|.+||| |++|.+++.+..
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r------------------------------------di~i~~~~~~~~ 67 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR------------------------------------DILVTATPAGVP 67 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC------------------------------------CEEEEcCCCCCC
Confidence 5799999999999999999998 567888876 577777766544
Q ss_pred HHHHHHHHHhcCCCCCEEEecC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGG 107 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~s 107 (503)
+.+ +....+.++.+|+|++
T Consensus 68 ~~~---~~~~~~~~~~~v~~~a 86 (86)
T cd05191 68 VLE---EATAKINEGAVVIDLA 86 (86)
T ss_pred chH---HHHHhcCCCCEEEecC
Confidence 332 2233456778888763
No 253
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.91 E-value=0.0055 Score=56.56 Aligned_cols=68 Identities=18% Similarity=0.311 Sum_probs=52.2
Q ss_pred EEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee--eCCHHHHHhccCCCcEEEEecCCC
Q 010702 9 IGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 9 IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~--~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
|.|+|. |.+|..+++.|.+.|++|++..|++++.+. ..+. .+.. ..+++.+.+.++.+|.||.+++..
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~-----~~~~~d~~d~~~~~~al~~~d~vi~~~~~~ 71 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGV-----EIIQGDLFDPDSVKAALKGADAVIHAAGPP 71 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTE-----EEEESCTTCHHHHHHHHTTSSEEEECCHST
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--cccc-----ccceeeehhhhhhhhhhhhcchhhhhhhhh
Confidence 679995 999999999999999999999999998876 2211 1111 235555666667799999999754
No 254
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=96.91 E-value=0.0029 Score=66.14 Aligned_cols=103 Identities=14% Similarity=0.151 Sum_probs=69.3
Q ss_pred CcEEEEcccHHHHHH-HHHHHhCCCcEEEEeCChhHHHHHHHhhcc----cC-C--C----Ceeee--CCHHHHHhccCC
Q 010702 7 SRIGLAGLAVMGQNL-ALNVAEKGFPISVYNRTTSKVDETLDRAHR----EG-Q--L----PLTGH--YTPRDFVLSIQR 72 (503)
Q Consensus 7 ~~IgIIGlG~mG~~l-A~~L~~~G~~V~v~dr~~~~~~~l~~~~~~----~g-~--~----~i~~~--~s~~e~~~~l~~ 72 (503)
|||.++|+|.||+++ ...|.+.|++|++.|++++.++.+.+++.- .+ . . .+... .+.+++.+.+..
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~ 80 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVIEAIAE 80 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHHHHhcC
Confidence 589999999999855 888899999999999999999998877531 01 0 0 11112 133455554455
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcC--------CCCCEEEecCCCC
Q 010702 73 PRSVIILVKAGSPVDQTIAALSEHM--------SPGDCIIDGGNEW 110 (503)
Q Consensus 73 ~dvIil~vp~~~~v~~vl~~l~~~l--------~~g~iIId~st~~ 110 (503)
+|+|.++|... ..+.++..|.+.| .++-+|+.|=|..
T Consensus 81 ~dlvt~~v~~~-~~~s~~~~l~~~L~~R~~~~~~~~~~VlsceN~~ 125 (381)
T PRK02318 81 ADLVTTAVGPN-ILPFIAPLIAKGLKKRKAQGNTKPLNIIACENMI 125 (381)
T ss_pred CCEEEeCCCcc-cchhHHHHHHHHHHHHHHcCCCCCCEEEecCChh
Confidence 89999888764 4555655554443 2333777887764
No 255
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.89 E-value=0.0029 Score=63.04 Aligned_cols=117 Identities=21% Similarity=0.226 Sum_probs=78.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
.+|.|+|+|-++++++..|++.|. +|+++||+.++.+++.+.....+ .........++.. +..+|+||-++|.+-.
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~--~~~~~~~~~~~~~-~~~~dliINaTp~Gm~ 203 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELG--AAVEAAALADLEG-LEEADLLINATPVGMA 203 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc--ccccccccccccc-ccccCEEEECCCCCCC
Confidence 569999999999999999999995 79999999999999887643221 0001112221111 1138999999997744
Q ss_pred HHH---HHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 86 VDQ---TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 86 v~~---vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
-.. .+. ...++++.++.|.--... .| .+.+..+++|...++
T Consensus 204 ~~~~~~~~~--~~~l~~~~~v~D~vY~P~-~T-plL~~A~~~G~~~id 247 (283)
T COG0169 204 GPEGDSPVP--AELLPKGAIVYDVVYNPL-ET-PLLREARAQGAKTID 247 (283)
T ss_pred CCCCCCCCc--HHhcCcCCEEEEeccCCC-CC-HHHHHHHHcCCeEEC
Confidence 321 222 345778999999855432 33 455666777766554
No 256
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.88 E-value=0.0039 Score=62.13 Aligned_cols=74 Identities=16% Similarity=0.236 Sum_probs=57.7
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||.|. +|.++|..|...|.+|+++++... ++.+.+.+ +|+||.+++....
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~---------------------~l~~~~~~---ADIVIsAvg~p~~ 214 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSK---------------------DMASYLKD---ADVIVSAVGKPGL 214 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCch---------------------hHHHHHhh---CCEEEECCCCCcc
Confidence 5899999987 999999999999999999986421 34445555 9999999987643
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+. . ..+++|.+|||.+...
T Consensus 215 i~---~---~~vk~gavVIDvGi~~ 233 (286)
T PRK14175 215 VT---K---DVVKEGAVIIDVGNTP 233 (286)
T ss_pred cC---H---HHcCCCcEEEEcCCCc
Confidence 22 1 2467899999998753
No 257
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.78 E-value=0.019 Score=61.52 Aligned_cols=114 Identities=9% Similarity=0.030 Sum_probs=67.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh-----HHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEec-
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS-----KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV- 80 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-----~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v- 80 (503)
++|+|+|+|.-|.++|+.|.+.|++|+++|+++. ..+++.+.+. .+.......+.+.. +|+||.+.
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi-----~~~~~~~~~~~~~~---~dlVV~Spg 86 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGV-----KLVLGENYLDKLDG---FDVIFKTPS 86 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCC-----EEEeCCCChHHhcc---CCEEEECCC
Confidence 5899999999999999999999999999998753 1233443331 12222222333344 89988873
Q ss_pred -CC-ChhHHHHHH---------HHH-hcCCCCCEEEecCCCChhhHHHHHHHHHhcCccE
Q 010702 81 -KA-GSPVDQTIA---------ALS-EHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (503)
Q Consensus 81 -p~-~~~v~~vl~---------~l~-~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (503)
|. ...+....+ +++ .......|-|..|++...++.-+...+...|...
T Consensus 87 i~~~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~ 146 (458)
T PRK01710 87 MRIDSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEGYKT 146 (458)
T ss_pred CCCCchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCCCE
Confidence 11 112222211 111 2222234566667776666655666777666543
No 258
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.78 E-value=0.0037 Score=62.18 Aligned_cols=74 Identities=15% Similarity=0.258 Sum_probs=58.3
Q ss_pred CcEEEEcccHH-HHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVM-GQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~m-G~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||.|.. |.++|..|.+.|.+|+++... ..++.+.+.+ +|+||.+++...-
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~---------------------t~~l~~~~~~---ADIVV~avG~~~~ 214 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK---------------------TRDLAAHTRQ---ADIVVAAVGKRNV 214 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEecCC---------------------CCCHHHHhhh---CCEEEEcCCCcCc
Confidence 57999999877 999999999999999997532 1355566666 9999999997643
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+.. ..+++|.+|||.+...
T Consensus 215 i~~------~~ik~gavVIDVGin~ 233 (285)
T PRK14189 215 LTA------DMVKPGATVIDVGMNR 233 (285)
T ss_pred cCH------HHcCCCCEEEEccccc
Confidence 222 5688999999998754
No 259
>PLN02602 lactate dehydrogenase
Probab=96.77 E-value=0.016 Score=59.71 Aligned_cols=99 Identities=12% Similarity=0.177 Sum_probs=61.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhc----ccCCCCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAH----REGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~----~~g~~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
+||+|||+|.+|.++|..|+..|. ++.++|+++++++.....-. ..+...+....+.++ +++ ||+||++.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~-~~d---aDiVVitA 113 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAV-TAG---SDLCIVTA 113 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHH-hCC---CCEEEECC
Confidence 589999999999999999998886 69999999876543332110 000002333345555 333 99999985
Q ss_pred CC----Ch-----------hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 81 KA----GS-----------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 81 p~----~~-----------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
-. +. .++++...+..+ .+..++|..||-.
T Consensus 114 G~~~k~g~tR~dll~~N~~I~~~i~~~I~~~-~p~~ivivvtNPv 157 (350)
T PLN02602 114 GARQIPGESRLNLLQRNVALFRKIIPELAKY-SPDTILLIVSNPV 157 (350)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCch
Confidence 32 11 122333455554 3566777777643
No 260
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=96.73 E-value=0.002 Score=53.52 Aligned_cols=79 Identities=19% Similarity=0.274 Sum_probs=59.2
Q ss_pred CcEEEEcccHHHHHHHHHH-HhCCCc-EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNV-AEKGFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L-~~~G~~-V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.+|.|+|+|.+|..++.++ ...|+. +.++|.++++..+-. . ++....+.+++.+.+ +.|+.+++||..
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i-----~---gipV~~~~~~l~~~~-~i~iaii~VP~~- 73 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEI-----G---GIPVYGSMDELEEFI-EIDIAIITVPAE- 73 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEE-----T---TEEEESSHHHHHHHC-TTSEEEEES-HH-
T ss_pred CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEE-----C---CEEeeccHHHhhhhh-CCCEEEEEcCHH-
Confidence 4799999999999988654 456776 557899998543111 1 467777999998877 599999999984
Q ss_pred hHHHHHHHHHh
Q 010702 85 PVDQTIAALSE 95 (503)
Q Consensus 85 ~v~~vl~~l~~ 95 (503)
.+.+++.++..
T Consensus 74 ~a~~~~~~~~~ 84 (96)
T PF02629_consen 74 AAQEVADELVE 84 (96)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67778877766
No 261
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=96.72 E-value=0.013 Score=61.86 Aligned_cols=124 Identities=18% Similarity=0.075 Sum_probs=76.3
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHH----HHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe-
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKV----DETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL- 79 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~----~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~- 79 (503)
.++||.|+|+|.-|.+.|+.|.+.|++|+++|.++... ..+...+. .+..-....+... .+|+|+..
T Consensus 6 ~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i-----~~~~g~~~~~~~~---~~d~vV~SP 77 (448)
T COG0771 6 QGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGI-----EVELGSHDDEDLA---EFDLVVKSP 77 (448)
T ss_pred cCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCc-----eeecCccchhccc---cCCEEEECC
Confidence 36789999999999999999999999999999776651 11111211 1111111112233 38999886
Q ss_pred -cCCChh-HHHHHH---------HHHhcC--CCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCC
Q 010702 80 -VKAGSP-VDQTIA---------ALSEHM--SPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (503)
Q Consensus 80 -vp~~~~-v~~vl~---------~l~~~l--~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg 136 (503)
+|.... ++.... +|.... ...-+-|..||+...+|.-+...++..|....-++=.|.
T Consensus 78 Gi~~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~ 147 (448)
T COG0771 78 GIPPTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGT 147 (448)
T ss_pred CCCCCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCc
Confidence 333222 333321 222222 233667778888888887788888888876555544444
No 262
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=96.71 E-value=0.0034 Score=65.40 Aligned_cols=97 Identities=18% Similarity=0.148 Sum_probs=60.6
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhC-CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeC--CHHHHHhccCCCcEEEEec
Q 010702 5 ALSRIGLAGL-AVMGQNLALNVAEK-GFPISVYNRTTSKVDETLDRAHREGQLPLTGHY--TPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 5 ~~~~IgIIGl-G~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~--s~~e~~~~l~~~dvIil~v 80 (503)
+++||+|+|+ |..|..|.+.|.++ +++|..+.++...-+.+................ +.+++ + ++|+||+++
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~-~---~~DvVf~Al 112 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADF-S---DVDAVFCCL 112 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHh-c---CCCEEEEcC
Confidence 4568999996 99999999999998 678888876544322222111000000011111 22222 3 399999999
Q ss_pred CCChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
|++ ...+++.. +..|..|||.|+..
T Consensus 113 p~~-~s~~i~~~----~~~g~~VIDlSs~f 137 (381)
T PLN02968 113 PHG-TTQEIIKA----LPKDLKIVDLSADF 137 (381)
T ss_pred CHH-HHHHHHHH----HhCCCEEEEcCchh
Confidence 985 44555544 34689999999865
No 263
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=96.68 E-value=0.008 Score=64.17 Aligned_cols=107 Identities=17% Similarity=0.181 Sum_probs=72.8
Q ss_pred CcEEEEcc----cHHHHHHHHHHHhCCCc--EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 7 SRIGLAGL----AVMGQNLALNVAEKGFP--ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 7 ~~IgIIGl----G~mG~~lA~~L~~~G~~--V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
.+|+|||+ |.+|..+.++|.+.||. |+..|...+. .. ++..+.+++++-+. +|++++++
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~---i~---------G~~~~~sl~~lp~~---~Dlavi~v 72 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGE---IL---------GVKAYPSVLEIPDP---VDLAVIVV 72 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCc---cC---------CccccCCHHHCCCC---CCEEEEec
Confidence 46999999 88999999999999994 5555544321 11 35677889887665 89999999
Q ss_pred CCChhHHHHHHHHHhcCCCCCEEEecCCCChh-------hHHHHHHHHHhcCccEecc
Q 010702 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYL-------NTERRIHEASQKGLLYLGM 131 (503)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~~~-------~t~~~~~~l~~~gi~~i~~ 131 (503)
|.. .+.++++++...- -..+||- +.+... ..+++.+..++.|+++++.
T Consensus 73 p~~-~~~~~l~e~~~~g-v~~~vi~-s~gf~e~g~~g~~~~~~l~~~a~~~girvlGP 127 (447)
T TIGR02717 73 PAK-YVPQVVEECGEKG-VKGAVVI-TAGFKEVGEEGAELEQELVEIARKYGMRLLGP 127 (447)
T ss_pred CHH-HHHHHHHHHHhcC-CCEEEEE-CCCccccCcchHHHHHHHHHHHHHcCCEEEec
Confidence 985 7888888877632 3344442 332222 2245555666778877764
No 264
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.67 E-value=0.024 Score=60.52 Aligned_cols=116 Identities=16% Similarity=0.104 Sum_probs=65.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh-hHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT-SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~-~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.++|.|+|.|.+|..+|..|++.|++|+++|++. +.+++..++-...+ ..+.......+.... +|+||.+.-...
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~---~d~vv~~~g~~~ 80 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELG-IELVLGEYPEEFLEG---VDLVVVSPGVPL 80 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC-CEEEeCCcchhHhhc---CCEEEECCCCCC
Confidence 3689999999999999999999999999999985 33322222111100 122223333344444 899998763221
Q ss_pred hHHHH--H-----------HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcC
Q 010702 85 PVDQT--I-----------AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKG 125 (503)
Q Consensus 85 ~v~~v--l-----------~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~g 125 (503)
....+ . +.+........|-|..|++...++.-+...|+..|
T Consensus 81 ~~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~~g 134 (450)
T PRK14106 81 DSPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKNAG 134 (450)
T ss_pred CCHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcC
Confidence 11111 1 11112223234555556666555555556666655
No 265
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.66 E-value=0.011 Score=63.61 Aligned_cols=44 Identities=9% Similarity=0.148 Sum_probs=39.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH 50 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~ 50 (503)
.+|.|+|+|.+|...+..+...|.+|.++|+++++.+...+.|.
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA 209 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGA 209 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC
Confidence 47999999999999999999999999999999999887776553
No 266
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=96.66 E-value=0.011 Score=59.28 Aligned_cols=120 Identities=12% Similarity=0.155 Sum_probs=71.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCc-EEEEeCCh---hHHHHHHHhhcccC-CCCeeee--CCHHHHHhccCCCcEEEEe
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTT---SKVDETLDRAHREG-QLPLTGH--YTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~-V~v~dr~~---~~~~~l~~~~~~~g-~~~i~~~--~s~~e~~~~l~~~dvIil~ 79 (503)
+++.|+|+|-+|++++..|++.|.+ |+++||++ ++.+++.+.-...+ ...+... .+.+++.+.++.+|+||-+
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilINa 206 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILVNA 206 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEEEe
Confidence 4688999999999999999999996 99999997 66666554321110 0011111 1222332223348999999
Q ss_pred cCCChh--HHH-HHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEe
Q 010702 80 VKAGSP--VDQ-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 80 vp~~~~--v~~-vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (503)
+|.+-. .+. .+.. ...+.++.+|+|.--... .| .+.+..+++|...+
T Consensus 207 Tp~Gm~~~~~~~~~~~-~~~l~~~~~v~D~vY~P~-~T-~ll~~A~~~G~~~~ 256 (289)
T PRK12548 207 TLVGMKPNDGETNIKD-TSVFRKDLVVADTVYNPK-KT-KLLEDAEAAGCKTV 256 (289)
T ss_pred CCCCCCCCCCCCCCCc-HHhcCCCCEEEEecCCCC-CC-HHHHHHHHCCCeee
Confidence 987631 010 0100 134677889999865433 33 34455566665444
No 267
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.65 E-value=0.0091 Score=60.46 Aligned_cols=97 Identities=15% Similarity=0.181 Sum_probs=59.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChhH--HHHHHHhhcccCCCCeeee-C--CHHHHHhccCCCcEEEE
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGF--PISVYNRTTSK--VDETLDRAHREGQLPLTGH-Y--TPRDFVLSIQRPRSVII 78 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~~~--~~~l~~~~~~~g~~~i~~~-~--s~~e~~~~l~~~dvIil 78 (503)
|||+|||+ |.+|.++|..|+..|. ++.++|++... .-++.. .... ..+..+ . ++.+..+ ++|+||+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~-~~~~--~~i~~~~~~~~~y~~~~---daDivvi 74 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSH-INTP--AKVTGYLGPEELKKALK---GADVVVI 74 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHh-CCCc--ceEEEecCCCchHHhcC---CCCEEEE
Confidence 58999999 9999999999998885 79999988111 111111 1000 124432 2 2233333 4999999
Q ss_pred ecCCC----h-----------hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 79 LVKAG----S-----------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 79 ~vp~~----~-----------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+.-.+ . .++++.+.+.++ .+..+||..||-.
T Consensus 75 taG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~-~p~a~vivvtNPv 120 (310)
T cd01337 75 PAGVPRKPGMTRDDLFNINAGIVRDLATAVAKA-CPKALILIISNPV 120 (310)
T ss_pred eCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCch
Confidence 86331 1 233344555555 4677888888854
No 268
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.63 E-value=0.017 Score=59.28 Aligned_cols=124 Identities=12% Similarity=0.161 Sum_probs=69.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc---cCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR---EGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~---~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
..+|.|||+|.+|+.+|.+|++.|+ +++++|++.-....+..+... ..+.+...+....+.+..+ .+++-+.++.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~i-np~v~i~~~~ 102 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKI-NSEVEIVPVV 102 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHH-CCCcEEEEEe
Confidence 3589999999999999999999998 799999986322222111000 0000000011111222222 1566666665
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
... ..+.++++ +..-++|||++.. +.....+.+.+.+.++-++.+.+.|
T Consensus 103 ~~~-~~~~~~~~---~~~~DlVid~~D~-~~~r~~in~~~~~~~ip~i~~~~~g 151 (338)
T PRK12475 103 TDV-TVEELEEL---VKEVDLIIDATDN-FDTRLLINDLSQKYNIPWIYGGCVG 151 (338)
T ss_pred ccC-CHHHHHHH---hcCCCEEEEcCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 432 22233443 4456899999754 3333344556667788777665544
No 269
>PRK06392 homoserine dehydrogenase; Provisional
Probab=96.63 E-value=0.0096 Score=60.74 Aligned_cols=129 Identities=16% Similarity=0.205 Sum_probs=71.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--------CCc-EEEEeCChhH-------HHHHHHhhcccCCCCeeeeC--CHHHHHh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK--------GFP-ISVYNRTTSK-------VDETLDRAHREGQLPLTGHY--TPRDFVL 68 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~--------G~~-V~v~dr~~~~-------~~~l~~~~~~~g~~~i~~~~--s~~e~~~ 68 (503)
|+|+|||+|.+|+.+++.|.++ +++ |.++|++... .+++.+.... +.+...... +++++..
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~-g~l~~~~~~~~~~~~ll~ 79 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEK-GRLEEIDYEKIKFDEIFE 79 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhc-CccccCCCCcCCHHHHhc
Confidence 4899999999999999999873 344 3466766432 1222211100 000001112 5666654
Q ss_pred ccCCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhh-HHHHHHHHHhcCccE-ecccCCCChh
Q 010702 69 SIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLN-TERRIHEASQKGLLY-LGMGVSGGEE 138 (503)
Q Consensus 69 ~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~-t~~~~~~l~~~gi~~-i~~pvsgg~~ 138 (503)
.++|+||.|.|....-.....-+.+.|..|.-||..+...... -.++.+..+++|.+| +++.|.||.+
T Consensus 80 --~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~~eatV~~g~P 149 (326)
T PRK06392 80 --IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEATVAGGVP 149 (326)
T ss_pred --CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEEEeeeeeeccc
Confidence 2589999999753221223444455677888888766543221 223333444556654 4566666543
No 270
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=96.60 E-value=0.01 Score=59.40 Aligned_cols=119 Identities=17% Similarity=0.192 Sum_probs=73.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhccc-CCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHRE-GQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~-g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
+++.|+|+|-.|++++..|++.|. +|+++||++++.+++.+..... +...+.. .+..+....+..+|+||-++|-+-
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~-~~~~~~~~~~~~~divINaTp~Gm 206 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVG-VDARGIEDVIAAADGVVNATPMGM 206 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEe-cCHhHHHHHHhhcCEEEEcCCCCC
Confidence 479999999999999999999997 6999999999998887642110 0000111 222211111223899999998653
Q ss_pred hHH-H-HHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 85 PVD-Q-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 85 ~v~-~-vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
.-. . .+. ...+.++.++.|.--.. ..| .+.+..+++|...++
T Consensus 207 ~~~~~~~~~--~~~l~~~~~v~D~vY~P-~~T-~ll~~A~~~G~~~~~ 250 (283)
T PRK14027 207 PAHPGTAFD--VSCLTKDHWVGDVVYMP-IET-ELLKAARALGCETLD 250 (283)
T ss_pred CCCCCCCCC--HHHcCCCcEEEEcccCC-CCC-HHHHHHHHCCCEEEc
Confidence 100 0 011 12356778999986543 333 344555666765443
No 271
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.60 E-value=0.024 Score=53.85 Aligned_cols=79 Identities=13% Similarity=0.098 Sum_probs=52.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh-HHHHHHHhhcccCCCCeeeeC-CHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS-KVDETLDRAHREGQLPLTGHY-TPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~i~~~~-s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
++|-|||.|.||...+..|.+.|++|++++++.. .+..+.+.+ .+.... .+.+ ..+..+|+||.++.++
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~------~i~~~~~~~~~--~~l~~adlViaaT~d~- 81 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEG------KIRWKQKEFEP--SDIVDAFLVIAATNDP- 81 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCC------CEEEEecCCCh--hhcCCceEEEEcCCCH-
Confidence 5899999999999999999999999999987653 334444332 122221 1111 1233489999888775
Q ss_pred hHHHHHHHHH
Q 010702 85 PVDQTIAALS 94 (503)
Q Consensus 85 ~v~~vl~~l~ 94 (503)
.+...+....
T Consensus 82 elN~~i~~~a 91 (202)
T PRK06718 82 RVNEQVKEDL 91 (202)
T ss_pred HHHHHHHHHH
Confidence 5666664443
No 272
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.59 E-value=0.041 Score=59.51 Aligned_cols=113 Identities=13% Similarity=0.103 Sum_probs=68.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEec--CCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV--KAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v--p~~~ 84 (503)
++|.|+|+|..|.+.++.|...|++|+++|+++...+.+.+.+. .+.......+.+.+ +|+||.+- |...
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~-----~~~~~~~~~~~l~~---~D~VV~SpGi~~~~ 84 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGV-----ATVSTSDAVQQIAD---YALVVTSPGFRPTA 84 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCC-----EEEcCcchHhHhhc---CCEEEECCCCCCCC
Confidence 57999999999999999999999999999988776655444321 11111222333344 89888874 3332
Q ss_pred h-HHHHHH---------HHHhcC--------CCCCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 85 P-VDQTIA---------ALSEHM--------SPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 85 ~-v~~vl~---------~l~~~l--------~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
+ +...-+ ++.-.+ +...|-|..|++...++.-+...++..|..
T Consensus 85 p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g~~ 145 (488)
T PRK03369 85 PVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAGRR 145 (488)
T ss_pred HHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcCCc
Confidence 2 221110 121111 112455677777766666667777776643
No 273
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.58 E-value=0.026 Score=53.54 Aligned_cols=123 Identities=12% Similarity=0.138 Sum_probs=69.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc-ccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-REGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~-~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.+|.|||+|.+|+.+|.+|+..|. +++++|.+.-....+..+.. .....+-.-+....+.+..+ .+++-+.+.+..-
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~v~i~~~~~~i 100 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLREL-NSDIQVTALKERV 100 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHh-CCCCEEEEehhcC
Confidence 589999999999999999999997 79999988533333322110 00000000111122222221 1455555554321
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
..+.+. ..+..-++||+++.. +..-..+.+.+.+.++-|+.+.+.|
T Consensus 101 -~~~~~~---~~~~~~D~Vi~~~d~-~~~r~~l~~~~~~~~ip~i~~~~~g 146 (202)
T TIGR02356 101 -TAENLE---LLINNVDLVLDCTDN-FATRYLINDACVALGTPLISAAVVG 146 (202)
T ss_pred -CHHHHH---HHHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 111222 234456899988654 3444445566677788888776543
No 274
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.56 E-value=0.026 Score=57.19 Aligned_cols=98 Identities=10% Similarity=0.069 Sum_probs=59.4
Q ss_pred cEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHh----hcccCCCCeee-eCCHHHHHhccCCCcEEEEec
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDR----AHREGQLPLTG-HYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~----~~~~g~~~i~~-~~s~~e~~~~l~~~dvIil~v 80 (503)
||+|||+|.+|.++|..|+..|. ++.++|+++++++..... ....+..+++. ..+.+++ ++ +|+||++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~-~~---aDivvita 76 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDC-AD---ADIIVITA 76 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHh-CC---CCEEEECC
Confidence 69999999999999999998886 699999987654332211 11000001222 3444443 33 99999986
Q ss_pred CC----Chh-------------HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 81 KA----GSP-------------VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 81 p~----~~~-------------v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
-. +.. ++++...+..+- +..+++..||-.
T Consensus 77 G~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~-p~~i~ivvsNPv 122 (307)
T cd05290 77 GPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVT-KEAVIILITNPL 122 (307)
T ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecCcH
Confidence 32 211 122224444444 566788777753
No 275
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=96.55 E-value=0.02 Score=49.13 Aligned_cols=104 Identities=13% Similarity=0.122 Sum_probs=60.2
Q ss_pred cccHHHHHHHHHHHhC----CCcEE-EEeCC--hhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 13 GLAVMGQNLALNVAEK----GFPIS-VYNRT--TSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 13 GlG~mG~~lA~~L~~~----G~~V~-v~dr~--~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
|+|.||+.++..|.+. +++|. +++|+ .... ...... +.....+++++++.. ++|+||-|.+. ..
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~-~~dvvVE~t~~-~~ 71 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKD-WAASFP------DEAFTTDLEELIDDP-DIDVVVECTSS-EA 71 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETT-HHHHHT------HSCEESSHHHHHTHT-T-SEEEE-SSC-HH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhh-hhhhcc------cccccCCHHHHhcCc-CCCEEEECCCc-hH
Confidence 8999999999999987 56654 67888 1111 111111 135678999998833 39999999554 45
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCChh---hHHHHHHHHHhcCccE
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEWYL---NTERRIHEASQKGLLY 128 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~---~t~~~~~~l~~~gi~~ 128 (503)
+.+.+.. .|..|.-||..+..... .-.++.+..++.|.+|
T Consensus 72 ~~~~~~~---~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~ 114 (117)
T PF03447_consen 72 VAEYYEK---ALERGKHVVTANKGALADEALYEELREAARKNGVRI 114 (117)
T ss_dssp HHHHHHH---HHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EE
T ss_pred HHHHHHH---HHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEE
Confidence 5554444 45578888887766544 2223333444456554
No 276
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.54 E-value=0.038 Score=59.54 Aligned_cols=113 Identities=18% Similarity=0.177 Sum_probs=67.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeC--CHHHHHhccCCCcEEEEe--cC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHY--TPRDFVLSIQRPRSVIIL--VK 81 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~--s~~e~~~~l~~~dvIil~--vp 81 (503)
+++|.|+|+|..|.++|+.|.+.|++|+++|+++....++.+.. ++.... ...+.+.+ +|+||.+ +|
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~------gi~~~~~~~~~~~~~~---~d~vV~Spgi~ 85 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVT------GVADISTAEASDQLDS---FSLVVTSPGWR 85 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhc------CcEEEeCCCchhHhcC---CCEEEeCCCCC
Confidence 35799999999999999999999999999998876554433321 122221 22333344 8888876 34
Q ss_pred CChh-HHHHHH---------HHHhc------C-CC-CCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 82 AGSP-VDQTIA---------ALSEH------M-SP-GDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 82 ~~~~-v~~vl~---------~l~~~------l-~~-g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
.+.+ +...-+ ++.-. . .+ ..|-|..|+++..++.-+...++..|..
T Consensus 86 ~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~~ 149 (473)
T PRK00141 86 PDSPLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGFA 149 (473)
T ss_pred CCCHHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCc
Confidence 3322 222110 12111 1 12 2455666777666666666777766644
No 277
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=96.54 E-value=0.0091 Score=60.56 Aligned_cols=96 Identities=18% Similarity=0.227 Sum_probs=59.6
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChhHH--HHHHHhhcccCCCCeeeeC---CHHHHHhccCCCcEEEEe
Q 010702 8 RIGLAGL-AVMGQNLALNVAEKGF--PISVYNRTTSKV--DETLDRAHREGQLPLTGHY---TPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 8 ~IgIIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~--~~l~~~~~~~g~~~i~~~~---s~~e~~~~l~~~dvIil~ 79 (503)
||+|||+ |.+|.++|..|+..|+ ++.++|+++... -++.. .... .++..+. ++.+.+++ +|+||++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~-~~~~--~~i~~~~~~~~~~~~~~d---aDivvit 74 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSH-IPTA--ASVKGFSGEEGLENALKG---ADVVVIP 74 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhc-CCcC--ceEEEecCCCchHHHcCC---CCEEEEe
Confidence 6999999 9999999999998886 799999987211 11111 1100 1233321 22334444 9999998
Q ss_pred cCCCh---------------hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
.-.+. .++++...+..+ .++.+||..||-.
T Consensus 75 aG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~-~p~~iiivvsNPv 119 (312)
T TIGR01772 75 AGVPRKPGMTRDDLFNVNAGIVKDLVAAVAES-CPKAMILVITNPV 119 (312)
T ss_pred CCCCCCCCccHHHHHHHhHHHHHHHHHHHHHh-CCCeEEEEecCch
Confidence 74321 233444555555 4777888888854
No 278
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=96.53 E-value=0.027 Score=56.34 Aligned_cols=116 Identities=14% Similarity=0.046 Sum_probs=80.6
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhH-HHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSK-VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
..+|.|.| .|.+|..+-.+|...|++ .++..+|.+ .++.. ++..+.|++|+-+.. .+|++++++|..
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~-~v~~V~p~~~~~~v~---------G~~~y~sv~dlp~~~-~~Dlavi~vpa~ 74 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAYGTN-IVGGVTPGKGGTTVL---------GLPVFDSVKEAVEET-GANASVIFVPAP 74 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhCCCC-EEEEECCCCCcceec---------CeeccCCHHHHhhcc-CCCEEEEecCHH
Confidence 45899999 599999999999999999 777777762 11111 367788999987742 269999999985
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhh-HHHHHHHHHhcCccEecccCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLN-TERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~-t~~~~~~l~~~gi~~i~~pvsg 135 (503)
.+.+++++....--+ .+||-. ...... .+++.+..++.|+++++.-..|
T Consensus 75 -~v~~~l~e~~~~Gvk-~avIis-~Gf~e~~~~~l~~~a~~~girilGPNc~G 124 (286)
T TIGR01019 75 -FAADAIFEAIDAGIE-LIVCIT-EGIPVHDMLKVKRYMEESGTRLIGPNCPG 124 (286)
T ss_pred -HHHHHHHHHHHCCCC-EEEEEC-CCCCHHHHHHHHHHHHHcCCEEECCCCce
Confidence 677788777653222 344433 333333 3466667778899999865544
No 279
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.50 E-value=0.017 Score=58.87 Aligned_cols=93 Identities=12% Similarity=0.172 Sum_probs=58.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccC-CCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQ-RPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~-~~dvIil~vp~~~~ 85 (503)
.+|+|+|+|-+|..-.+.....|.+|+++||++++.+.+.+.|+.. ....+.++..+.++ ..|+||.+++ ...
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~-----~i~~~~~~~~~~~~~~~d~ii~tv~-~~~ 241 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADH-----VINSSDSDALEAVKEIADAIIDTVG-PAT 241 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcE-----EEEcCCchhhHHhHhhCcEEEECCC-hhh
Confidence 4799999997776555555568999999999999998888776542 22211122222211 1789999988 555
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+...++. |+++-.++-.+..
T Consensus 242 ~~~~l~~----l~~~G~~v~vG~~ 261 (339)
T COG1064 242 LEPSLKA----LRRGGTLVLVGLP 261 (339)
T ss_pred HHHHHHH----HhcCCEEEEECCC
Confidence 5544443 4444444444443
No 280
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.47 E-value=0.016 Score=58.25 Aligned_cols=120 Identities=17% Similarity=0.179 Sum_probs=73.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCCh---hHHHHHHHhhcccCCCCeeeeCCHHH---HHhccCCCcEEEEe
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTT---SKVDETLDRAHREGQLPLTGHYTPRD---FVLSIQRPRSVIIL 79 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~---~~~~~l~~~~~~~g~~~i~~~~s~~e---~~~~l~~~dvIil~ 79 (503)
+++.|||+|-.+++++..|+..|. +|+++||++ ++.+.+.+.........+. ..++++ +.+.+.++|+||-+
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~-~~~~~~~~~l~~~~~~aDivINa 203 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVT-VTDLADQQAFAEALASADILTNG 203 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEE-EechhhhhhhhhhcccCCEEEEC
Confidence 479999999999999999999896 799999995 4777776542110000012 222321 22233458999999
Q ss_pred cCCChh--HHH-HHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 80 VKAGSP--VDQ-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 80 vp~~~~--v~~-vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
+|.+-. .+. .... ...++++.++.|.--. |..| .+.+..+++|...++
T Consensus 204 Tp~Gm~~~~~~~~~~~-~~~l~~~~~v~D~vY~-P~~T-~ll~~A~~~G~~~~~ 254 (288)
T PRK12749 204 TKVGMKPLENESLVND-ISLLHPGLLVTECVYN-PHMT-KLLQQAQQAGCKTID 254 (288)
T ss_pred CCCCCCCCCCCCCCCc-HHHCCCCCEEEEecCC-CccC-HHHHHHHHCCCeEEC
Confidence 987531 111 1100 1235678899998643 3334 455556677765544
No 281
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.47 E-value=0.0091 Score=55.31 Aligned_cols=121 Identities=11% Similarity=0.078 Sum_probs=62.3
Q ss_pred cEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
||.|||+|.+|+.++.+|++.|. +++++|.+.-....+..+.......+-..+....+.++.+ .+++=+.+.+... .
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~l-np~v~i~~~~~~~-~ 78 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREI-NPFVKIEAINIKI-D 78 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHH-CCCCEEEEEEeec-C
Confidence 58999999999999999999998 5999998862222222110000000000011111122221 1344444443321 1
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc-CccEecccCC
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK-GLLYLGMGVS 134 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~-gi~~i~~pvs 134 (503)
.+-+++ .+..-++||+++- .+..-..+.+.+.++ ++-|+.+...
T Consensus 79 ~~~~~~---~l~~~DlVi~~~d-~~~~r~~i~~~~~~~~~ip~i~~~~~ 123 (174)
T cd01487 79 ENNLEG---LFGDCDIVVEAFD-NAETKAMLAESLLGNKNKPVVCASGM 123 (174)
T ss_pred hhhHHH---HhcCCCEEEECCC-CHHHHHHHHHHHHHHCCCCEEEEehh
Confidence 112222 3445689999844 333333355555554 7777765433
No 282
>PTZ00325 malate dehydrogenase; Provisional
Probab=96.46 E-value=0.026 Score=57.41 Aligned_cols=106 Identities=15% Similarity=0.136 Sum_probs=60.5
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCC--CcEEEEeCChhHHH--HHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 5 ALSRIGLAGL-AVMGQNLALNVAEKG--FPISVYNRTTSKVD--ETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 5 ~~~~IgIIGl-G~mG~~lA~~L~~~G--~~V~v~dr~~~~~~--~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
+|.||+|||+ |.+|..+|..|+..+ .++.++|++....+ ++...... ..+...+++.+..+.++.+|+||++
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~---~~v~~~td~~~~~~~l~gaDvVVit 83 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTP---AKVTGYADGELWEKALRGADLVLIC 83 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcC---ceEEEecCCCchHHHhCCCCEEEEC
Confidence 4679999999 999999999999665 58999999432211 22211111 1233333322212233349999998
Q ss_pred cCCCh---------------hHHHHHHHHHhcCCCCCEEEecCCCChhhH
Q 010702 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (503)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~~~~t 114 (503)
.-... .++++++.+.++ .+..+|+..||.....+
T Consensus 84 aG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~-~~~~iviv~SNPvdv~~ 132 (321)
T PTZ00325 84 AGVPRKPGMTRDDLFNTNAPIVRDLVAAVASS-APKAIVGIVSNPVNSTV 132 (321)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHHHH
Confidence 74321 122233444443 45567777777544333
No 283
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.46 E-value=0.0076 Score=61.83 Aligned_cols=92 Identities=15% Similarity=0.242 Sum_probs=58.4
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcE---EEEeCChhHHHHHHHhhcccCCCCeeeeC-CHHHHHhccCCCcEEEEec
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEKGFPI---SVYNRTTSKVDETLDRAHREGQLPLTGHY-TPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~G~~V---~v~dr~~~~~~~l~~~~~~~g~~~i~~~~-s~~e~~~~l~~~dvIil~v 80 (503)
++||+|||+ |..|..+.+.|.++||.+ ....++.+.-+.+.-.+ . .+...+ +..++ +. +|+||+|+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g-~----~i~v~d~~~~~~-~~---vDvVf~A~ 71 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKG-K----ELKVEDLTTFDF-SG---VDIALFSA 71 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCC-c----eeEEeeCCHHHH-cC---CCEEEECC
Confidence 368999995 999999999999988864 55544433222221111 1 122221 22222 34 99999999
Q ss_pred CCChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
|.+ ...++...+. ..|..|||.|+.+
T Consensus 72 g~g-~s~~~~~~~~---~~G~~VIDlS~~~ 97 (334)
T PRK14874 72 GGS-VSKKYAPKAA---AAGAVVIDNSSAF 97 (334)
T ss_pred ChH-HHHHHHHHHH---hCCCEEEECCchh
Confidence 986 4555555543 4678999999753
No 284
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.45 E-value=0.01 Score=59.10 Aligned_cols=74 Identities=22% Similarity=0.321 Sum_probs=58.3
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||-|. +|.++|..|...|..|+++++.. .++++.+.+ +|+||.++..+..
T Consensus 160 k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T---------------------~~l~~~~~~---ADIvi~avG~p~~ 215 (285)
T PRK10792 160 LNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT---------------------KNLRHHVRN---ADLLVVAVGKPGF 215 (285)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC---------------------CCHHHHHhh---CCEEEEcCCCccc
Confidence 5799999888 99999999999999999997542 245566666 9999999965543
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+.. ..+++|.+|||.+...
T Consensus 216 v~~------~~vk~gavVIDvGin~ 234 (285)
T PRK10792 216 IPG------EWIKPGAIVIDVGINR 234 (285)
T ss_pred ccH------HHcCCCcEEEEccccc
Confidence 332 4578999999998653
No 285
>PRK05086 malate dehydrogenase; Provisional
Probab=96.45 E-value=0.025 Score=57.41 Aligned_cols=98 Identities=18% Similarity=0.233 Sum_probs=59.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHh---CCCcEEEEeCChhHH---HHHHHhhcccCCCCeee--eCCHHHHHhccCCCcEEE
Q 010702 7 SRIGLAGL-AVMGQNLALNVAE---KGFPISVYNRTTSKV---DETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVI 77 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~---~G~~V~v~dr~~~~~---~~l~~~~~~~g~~~i~~--~~s~~e~~~~l~~~dvIi 77 (503)
|||+|||+ |.+|..++..|.. .++++.++|+++... -++.... .. ..+.. .+++.+.++ .+|+||
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~-~~--~~i~~~~~~d~~~~l~---~~DiVI 74 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIP-TA--VKIKGFSGEDPTPALE---GADVVL 74 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCC-CC--ceEEEeCCCCHHHHcC---CCCEEE
Confidence 58999999 9999999988854 346899999986431 1221111 00 02332 234344444 499999
Q ss_pred EecCCCh---------------hHHHHHHHHHhcCCCCCEEEecCCCCh
Q 010702 78 ILVKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEWY 111 (503)
Q Consensus 78 l~vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~~ 111 (503)
+|.-... .++++++.+.++ .+..+|+..||-..
T Consensus 75 itaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~-~~~~ivivvsNP~D 122 (312)
T PRK05086 75 ISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKT-CPKACIGIITNPVN 122 (312)
T ss_pred EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCchH
Confidence 9974311 233444555554 46678888887543
No 286
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.45 E-value=0.029 Score=59.43 Aligned_cols=110 Identities=17% Similarity=0.099 Sum_probs=66.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh--
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS-- 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~-- 84 (503)
.+|.|||+|.+|.++|+.|.+.|++|+++|+++.......... . ....+.+.+..+ +|+||.+.+...
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~--~-----~~~~~~~~~~~~---~dlvV~s~gi~~~~ 73 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIH--E-----RYLENAEEFPEQ---VDLVVRSPGIKKEH 73 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHh--h-----hhcCCcHHHhcC---CCEEEECCCCCCCc
Confidence 4799999999999999999999999999998876433211000 0 011233333344 888888764432
Q ss_pred -hHHHHH--------H-HH-Hhc--C-CCCCEEEecCCCChhhHHHHHHHHHhcCc
Q 010702 85 -PVDQTI--------A-AL-SEH--M-SPGDCIIDGGNEWYLNTERRIHEASQKGL 126 (503)
Q Consensus 85 -~v~~vl--------~-~l-~~~--l-~~g~iIId~st~~~~~t~~~~~~l~~~gi 126 (503)
.++... + .+ ... . ....|-|..|++...++.-+...++..|.
T Consensus 74 ~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g~ 129 (418)
T PRK00683 74 PWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLGI 129 (418)
T ss_pred HHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcCC
Confidence 222222 1 11 111 1 22346677777776666667777776654
No 287
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.43 E-value=0.004 Score=55.02 Aligned_cols=123 Identities=16% Similarity=0.206 Sum_probs=70.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc-ccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-REGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~-~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.+|.|+|+|.+|+.+|.+|+..|. +++++|.+.=..+.+..+.. .....+..-+....+.+..+ .|++=+.+.+..
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~-np~~~v~~~~~~- 80 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEI-NPDVEVEAIPEK- 80 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHH-STTSEEEEEESH-
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHh-cCceeeeeeecc-
Confidence 589999999999999999999998 69999987543332222100 00000011111222333322 134445555543
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
..+..+.++. ..-++||+++.. +.....+.+.+.+.++.|+.+.+.|
T Consensus 81 ~~~~~~~~~~---~~~d~vi~~~d~-~~~~~~l~~~~~~~~~p~i~~~~~g 127 (135)
T PF00899_consen 81 IDEENIEELL---KDYDIVIDCVDS-LAARLLLNEICREYGIPFIDAGVNG 127 (135)
T ss_dssp CSHHHHHHHH---HTSSEEEEESSS-HHHHHHHHHHHHHTT-EEEEEEEET
T ss_pred cccccccccc---cCCCEEEEecCC-HHHHHHHHHHHHHcCCCEEEEEeec
Confidence 2233344444 345799998765 4455567777888899898887664
No 288
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.41 E-value=0.027 Score=51.25 Aligned_cols=77 Identities=12% Similarity=0.081 Sum_probs=50.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeee-CCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH-YTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~-~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
.+|.|||.|.+|...++.|.+.|++|++++ ++..+++.+.. .+... ..+++ .++..+|+||.++.++ .
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIs--p~~~~~l~~l~------~i~~~~~~~~~--~dl~~a~lViaaT~d~-e 82 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVS--PEICKEMKELP------YITWKQKTFSN--DDIKDAHLIYAATNQH-A 82 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEc--CccCHHHHhcc------CcEEEecccCh--hcCCCceEEEECCCCH-H
Confidence 579999999999999999999999999995 34444444321 12221 12221 1244589888887664 6
Q ss_pred HHHHHHHHH
Q 010702 86 VDQTIAALS 94 (503)
Q Consensus 86 v~~vl~~l~ 94 (503)
+...+....
T Consensus 83 ~N~~i~~~a 91 (157)
T PRK06719 83 VNMMVKQAA 91 (157)
T ss_pred HHHHHHHHH
Confidence 666665444
No 289
>PRK08328 hypothetical protein; Provisional
Probab=96.41 E-value=0.022 Score=55.28 Aligned_cols=121 Identities=14% Similarity=0.117 Sum_probs=71.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeC-CHHHH----HhccCCCcEEEEe
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHY-TPRDF----VLSIQRPRSVIIL 79 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~-s~~e~----~~~l~~~dvIil~ 79 (503)
..+|.|||+|-.|+.++.+|+..|. +++++|.+.-....+..+.... .-..-. .-.++ +..+ .+++.+.+
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~---~~dvG~~~k~~~a~~~l~~~-np~v~v~~ 102 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHW---EEDLGKNPKPLSAKWKLERF-NSDIKIET 102 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccC---hhhcCchHHHHHHHHHHHHh-CCCCEEEE
Confidence 3589999999999999999999997 6889988765544443321000 000001 11111 1211 26777776
Q ss_pred cCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
.+.. ..++-++++ +..-++|||+.-. +..-..+.+.+.+.++-++.+.+.|
T Consensus 103 ~~~~-~~~~~~~~~---l~~~D~Vid~~d~-~~~r~~l~~~~~~~~ip~i~g~~~g 153 (231)
T PRK08328 103 FVGR-LSEENIDEV---LKGVDVIVDCLDN-FETRYLLDDYAHKKGIPLVHGAVEG 153 (231)
T ss_pred Eecc-CCHHHHHHH---HhcCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEeecc
Confidence 5542 112223333 4456899998765 3333344555677788888776654
No 290
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.37 E-value=0.044 Score=58.80 Aligned_cols=112 Identities=16% Similarity=0.156 Sum_probs=70.0
Q ss_pred CCCcEEEEcccHHHHH-HHHHHHhCCCcEEEEeCChh-HHHHHHHhhcccCCCCeeee-CCHHHHHhccCCCcEEEEec-
Q 010702 5 ALSRIGLAGLAVMGQN-LALNVAEKGFPISVYNRTTS-KVDETLDRAHREGQLPLTGH-YTPRDFVLSIQRPRSVIILV- 80 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~-lA~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~i~~~-~s~~e~~~~l~~~dvIil~v- 80 (503)
..++|.|||+|..|.+ +|+.|.+.|++|+++|.++. ..+++.+.+ +... ....+.+.. +|+||.+-
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~g-------i~~~~~~~~~~~~~---~d~vv~spg 75 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELG-------AIIFIGHDAENIKD---ADVVVYSSA 75 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCC-------CEEeCCCCHHHCCC---CCEEEECCC
Confidence 3468999999999999 89999999999999997653 233443332 2332 122233333 89888763
Q ss_pred -CCC-hhHHHHH---------HHHHhc-CC-CCCEEEecCCCChhhHHHHHHHHHhcCc
Q 010702 81 -KAG-SPVDQTI---------AALSEH-MS-PGDCIIDGGNEWYLNTERRIHEASQKGL 126 (503)
Q Consensus 81 -p~~-~~v~~vl---------~~l~~~-l~-~g~iIId~st~~~~~t~~~~~~l~~~gi 126 (503)
|.+ ..++... -+++.. +. ...|-|..|++...++.-+...++..|.
T Consensus 76 i~~~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~ 134 (461)
T PRK00421 76 IPDDNPELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAGL 134 (461)
T ss_pred CCCCCHHHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence 332 2233221 123222 22 2356777788887777777777877764
No 291
>PRK08374 homoserine dehydrogenase; Provisional
Probab=96.35 E-value=0.062 Score=55.19 Aligned_cols=128 Identities=16% Similarity=0.272 Sum_probs=70.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHh--------CCCc--E-EEEeCChhH-------HHHHHHhhcccCCC-Cee-----eeC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAE--------KGFP--I-SVYNRTTSK-------VDETLDRAHREGQL-PLT-----GHY 61 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~--------~G~~--V-~v~dr~~~~-------~~~l~~~~~~~g~~-~i~-----~~~ 61 (503)
..+|+|+|+|.+|+.+++.|.+ .|.+ | .+.|++... .+++.+.....+.. .+. ...
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~ 81 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNF 81 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCC
Confidence 4689999999999999998877 5643 3 345654221 12222211110000 010 011
Q ss_pred CHHHHHhccCCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChh-hHHHHHHHHHhcCccEe-cccCCCChh
Q 010702 62 TPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYL-NTERRIHEASQKGLLYL-GMGVSGGEE 138 (503)
Q Consensus 62 s~~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~-~t~~~~~~l~~~gi~~i-~~pvsgg~~ 138 (503)
++++++... ++|+||-+++. ....+.+.. .+..|.-||..++.... .-+++.+..+++|..+. .+.+++|.+
T Consensus 82 ~~~ell~~~-~~DVvVd~t~~-~~a~~~~~~---al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiP 155 (336)
T PRK08374 82 SPEEIVEEI-DADIVVDVTND-KNAHEWHLE---ALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTP 155 (336)
T ss_pred CHHHHHhcC-CCCEEEECCCc-HHHHHHHHH---HHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCC
Confidence 667777532 38999998865 344444443 34577778776664211 22234444455666554 455776654
No 292
>PLN00106 malate dehydrogenase
Probab=96.32 E-value=0.02 Score=58.42 Aligned_cols=100 Identities=15% Similarity=0.173 Sum_probs=58.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChhHH--HHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGF--PISVYNRTTSKV--DETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~--~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
.||+|||+ |.+|..+|..|+..+. ++.++|+++... .++...... ..+....+..+..+.++.+|+||++.-
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~---~~i~~~~~~~d~~~~l~~aDiVVitAG 95 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTP---AQVRGFLGDDQLGDALKGADLVIIPAG 95 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcC---ceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence 58999999 9999999999997765 799999987211 112111110 123321223222333444999999863
Q ss_pred CC----hh-----------HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 82 AG----SP-----------VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 82 ~~----~~-----------v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
.+ .. ++++++.+.++- +..+|+..||-.
T Consensus 96 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~aivivvSNPv 138 (323)
T PLN00106 96 VPRKPGMTRDDLFNINAGIVKTLCEAVAKHC-PNALVNIISNPV 138 (323)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCCc
Confidence 21 11 222333444433 566777777754
No 293
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=96.29 E-value=0.041 Score=55.20 Aligned_cols=117 Identities=15% Similarity=0.017 Sum_probs=78.9
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhH-HHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSK-VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
+.||.|.|. |.+|..+..+|.+.||+ .+|=.+|.. .+++. ++..+.+++|+-+.. .+|+.++++|..
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~-~v~pVnp~~~~~~v~---------G~~~y~sv~dlp~~~-~~DlAvi~vp~~ 76 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTN-IVGGVTPGKGGTTVL---------GLPVFNTVAEAVEAT-GANASVIYVPPP 76 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCC-EEEEECCCCCCCeEe---------CeeccCCHHHHhhcc-CCCEEEEEcCHH
Confidence 468999996 88999999999999998 666555541 11111 366788998887621 269999999985
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
.+.+++++....--+ ..||-.+.-...+.+++.+..++.|+++++...+|
T Consensus 77 -~v~~~l~e~~~~gvk-~avI~s~Gf~~~~~~~l~~~a~~~girvlGPNc~G 126 (291)
T PRK05678 77 -FAADAILEAIDAGID-LIVCITEGIPVLDMLEVKAYLERKKTRLIGPNCPG 126 (291)
T ss_pred -HHHHHHHHHHHCCCC-EEEEECCCCCHHHHHHHHHHHHHcCCEEECCCCCc
Confidence 677777776653222 33443333332333466777788899999865554
No 294
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.26 E-value=0.012 Score=58.83 Aligned_cols=73 Identities=12% Similarity=0.273 Sum_probs=55.0
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||.|. .|+++|..|.+.|.+|++++|... ++.+.+.+ +|+||.+++.+..
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~---------------------~L~~~~~~---aDIvI~AtG~~~~ 215 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQ---------------------NLPELVKQ---ADIIVGAVGKPEL 215 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCch---------------------hHHHHhcc---CCEEEEccCCCCc
Confidence 5799999997 999999999999999999997321 22333344 9999999965432
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+. . +.+++|.+|+|.+..
T Consensus 216 v~---~---~~lk~gavViDvg~n 233 (283)
T PRK14192 216 IK---K---DWIKQGAVVVDAGFH 233 (283)
T ss_pred CC---H---HHcCCCCEEEEEEEe
Confidence 22 1 347899999998754
No 295
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.25 E-value=0.06 Score=57.67 Aligned_cols=113 Identities=15% Similarity=0.043 Sum_probs=67.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe--cCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~--vp~~~ 84 (503)
++|.|||+|..|.+.|..|.+.|++|+++|+.+.....+.+.+ +.......+.+. .+|+||.+ +|...
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g-------~~~~~~~~~~~~---~~d~vv~sp~i~~~~ 79 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAG-------ITTADLRTADWS---GFAALVLSPGVPLTH 79 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcC-------ccccCCChhHHc---CCCEEEECCCCCccC
Confidence 5799999999999999999999999999998765444444332 222211112223 38988864 23221
Q ss_pred -----hHHHHHH---------HHHhcC------CCCCEEEecCCCChhhHHHHHHHHHhcCccEe
Q 010702 85 -----PVDQTIA---------ALSEHM------SPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 85 -----~v~~vl~---------~l~~~l------~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (503)
.+....+ ++.... ....|-|..|++...++.-+...++..|....
T Consensus 80 ~~~~~~v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~g~~~~ 144 (460)
T PRK01390 80 PKPHWVVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREAGRDVQ 144 (460)
T ss_pred CcccHHHHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCCeE
Confidence 2333221 122111 22345566677776666666677777665443
No 296
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.22 E-value=0.058 Score=51.37 Aligned_cols=73 Identities=10% Similarity=0.059 Sum_probs=49.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh-HHHHHHHhhcccCCCCeeee---CCHHHHHhccCCCcEEEEecCC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS-KVDETLDRAHREGQLPLTGH---YTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~i~~~---~s~~e~~~~l~~~dvIil~vp~ 82 (503)
.+|.|||.|.+|..-++.|.+.|.+|++++.+.. .+..+.+.+ ++... ....+ +. .+++||.++.+
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~------~i~~~~~~~~~~d-l~---~~~lVi~at~d 79 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQG------GITWLARCFDADI-LE---GAFLVIAATDD 79 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcC------CEEEEeCCCCHHH-hC---CcEEEEECCCC
Confidence 5899999999999999999999999999987654 344454433 23221 12233 33 38888888666
Q ss_pred ChhHHHHH
Q 010702 83 GSPVDQTI 90 (503)
Q Consensus 83 ~~~v~~vl 90 (503)
. .+..-+
T Consensus 80 ~-~ln~~i 86 (205)
T TIGR01470 80 E-ELNRRV 86 (205)
T ss_pred H-HHHHHH
Confidence 4 344333
No 297
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.21 E-value=0.029 Score=57.25 Aligned_cols=98 Identities=15% Similarity=0.146 Sum_probs=59.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCChhH--HH----HHHHhh-cccCCCCeeeeCCHHHHHhccC
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRTTSK--VD----ETLDRA-HREGQLPLTGHYTPRDFVLSIQ 71 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~~~--~~----~l~~~~-~~~g~~~i~~~~s~~e~~~~l~ 71 (503)
+||+|||+ |.+|.++|..|+..|. ++.++|++++. ++ ++.... .... ++....+..+.+++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~--~~~i~~~~~~~~~d-- 78 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLA--EIVITDDPNVAFKD-- 78 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccC--ceEEecCcHHHhCC--
Confidence 58999999 9999999999998886 69999995432 22 111110 0000 12233333333343
Q ss_pred CCcEEEEecCC----Ch-----------hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 72 RPRSVIILVKA----GS-----------PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 72 ~~dvIil~vp~----~~-----------~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+|+||++.-. +. .++++...+..+.++..++|..||-
T Consensus 79 -aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNP 130 (322)
T cd01338 79 -ADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNP 130 (322)
T ss_pred -CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCc
Confidence 9999998632 11 1344445666665446677777753
No 298
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=96.18 E-value=0.034 Score=46.21 Aligned_cols=88 Identities=13% Similarity=0.175 Sum_probs=60.1
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhh
Q 010702 183 SGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDK 262 (503)
Q Consensus 183 ~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~ 262 (503)
.+.++|++.|.+.+..+++++|...++++.| +|..++.+.+. ...--+ ...+...-.+++. -+-||
T Consensus 3 ~AEl~K~~~N~~~a~~iaf~Nel~~lce~~g-iD~~~V~~~~~---~d~ri~------~~~~~pg~g~GG~----ClpkD 68 (96)
T PF00984_consen 3 EAELIKYAENAFRATKIAFANELARLCEKLG-IDVYEVIEAAN---TDPRIG------PHYLRPGPGFGGS----CLPKD 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SBHHHHHHHHH---TSTTTT------SSS-S-SSS--SS----CHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHc---cCcccc------cccCCCCCCCCCc----chhhh
Confidence 5789999999999999999999999999999 99999998873 211000 0111211112222 34445
Q ss_pred cCCcchHHHHHHHHHHcCCCcchHHHHH
Q 010702 263 TGMKGTGKWTVQQAAELSVAAPTIAASL 290 (503)
Q Consensus 263 ~~~kgtG~~~~~~A~~~gvp~p~~~~Av 290 (503)
.. .....+.++|.+.+++.+++
T Consensus 69 ~~------~L~~~~~~~g~~~~ll~~~~ 90 (96)
T PF00984_consen 69 PY------ALIYLAKELGYPPQLLEAVI 90 (96)
T ss_dssp HH------HHHHHHHHTTSHHHHHHHHH
T ss_pred HH------HHHHHHHHcCCCHHHHHHHH
Confidence 42 56678999999988777553
No 299
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.16 E-value=0.02 Score=54.75 Aligned_cols=120 Identities=14% Similarity=0.197 Sum_probs=63.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCc-EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~-V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
.+|.|||+|.+|+.+|.+|++.|.. ++++|.+.=....+..+.......+-.-+....+-+..+ .+++-+..++.. .
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~l-np~v~v~~~~~~-i 106 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEI-NPFVEIEAHNEK-I 106 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHH-CCCCEEEEEeee-c
Confidence 5899999999999999999999985 999998842222222110000000000011111111211 144445444432 1
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc-CccEeccc
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK-GLLYLGMG 132 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~-gi~~i~~p 132 (503)
..+.+.++ +..-++|||++-. +.....+.+.+.+. ++-++.+.
T Consensus 107 ~~~~~~~~---~~~~DvVI~a~D~-~~~r~~l~~~~~~~~~~p~I~~~ 150 (212)
T PRK08644 107 DEDNIEEL---FKDCDIVVEAFDN-AETKAMLVETVLEHPGKKLVAAS 150 (212)
T ss_pred CHHHHHHH---HcCCCEEEECCCC-HHHHHHHHHHHHHhCCCCEEEee
Confidence 12222233 3456899998543 33444455666666 77777553
No 300
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=96.16 E-value=0.038 Score=62.20 Aligned_cols=99 Identities=9% Similarity=0.111 Sum_probs=74.0
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecc-cCCCChhhh--------hcCC-c
Q 010702 76 VIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEEGA--------RHGP-S 145 (503)
Q Consensus 76 Iil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsgg~~~a--------~~G~-~ 145 (503)
||+|+|.. .+.+++.++.+.++++.+|.|.++++....+...+.+......|++. |+.|.+..- ..|. .
T Consensus 1 vila~Pv~-~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~~ 79 (673)
T PRK11861 1 VLLAAPVA-QTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRNV 79 (673)
T ss_pred CEEEcCHH-HHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCeE
Confidence 68999984 78999999999999999999999998766665555444323568885 888876432 2444 3
Q ss_pred ccC---CCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCc
Q 010702 146 LMP---GGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEG 181 (503)
Q Consensus 146 i~~---gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~ 181 (503)
+++ ..++++++.++++++.+| ..++.+.+.
T Consensus 80 il~p~~~~~~~~~~~~~~l~~~~G------a~~~~~~~~ 112 (673)
T PRK11861 80 VLCALPENAPDALARVEAMWRAAR------ADVRAMSAE 112 (673)
T ss_pred EEecCCCCCHHHHHHHHHHHHHcC------CEEEECCHH
Confidence 333 347789999999999999 567777664
No 301
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=96.15 E-value=0.017 Score=52.60 Aligned_cols=75 Identities=19% Similarity=0.387 Sum_probs=51.2
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||-+ .+|.+++..|.++|..|++++... .++++.++. +|+||.++....-
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T---------------------~~l~~~~~~---ADIVVsa~G~~~~ 92 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT---------------------KNLQEITRR---ADIVVSAVGKPNL 92 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS---------------------SSHHHHHTT---SSEEEE-SSSTT-
T ss_pred CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC---------------------Ccccceeee---ccEEeeeeccccc
Confidence 579999986 699999999999999999987553 244555555 9999999977543
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCCh
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEWY 111 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~ 111 (503)
++ ...+++|.+|||++....
T Consensus 93 i~------~~~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 93 IK------ADWIKPGAVVIDVGINYV 112 (160)
T ss_dssp B-------GGGS-TTEEEEE--CEEE
T ss_pred cc------cccccCCcEEEecCCccc
Confidence 22 235889999999988654
No 302
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=96.15 E-value=0.052 Score=54.59 Aligned_cols=105 Identities=12% Similarity=0.167 Sum_probs=78.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcchhh
Q 010702 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPE 405 (503)
Q Consensus 326 ~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~~~~ 405 (503)
++++.+|.++|.+..+.++.++|++.+-++ .++|.+++.++.+.| -.+|+.++.....+... +. ++.
T Consensus 163 G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~------~Gld~~~~~~~l~~~-~~~s~~~~~~~~~~~~~-~~-----~~~ 229 (292)
T PRK15059 163 GDGQTCKVANQIIVALNIEAVSEALLFASK------AGADPVRVRQALMGG-FASSRILEVHGERMIKR-TF-----NPG 229 (292)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHcC-cccCHHHHhhchhhhcC-CC-----CCC
Confidence 788999999999999999999999988774 349999999999877 46788776554333222 11 122
Q ss_pred HhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhc
Q 010702 406 FAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYR 445 (503)
Q Consensus 406 ~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~ 445 (503)
|. +.-...+++-++..|-+.|+|+|....+..+|+...
T Consensus 230 f~--l~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a~ 267 (292)
T PRK15059 230 FK--IALHQKDLNLALQSAKALALNLPNTATCQELFNTCA 267 (292)
T ss_pred Cc--hHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 32 223345678899999999999999998888776543
No 303
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.15 E-value=0.027 Score=57.89 Aligned_cols=124 Identities=11% Similarity=0.138 Sum_probs=70.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhccc-CCC--CeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHRE-GQL--PLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~-g~~--~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
..+|.|||+|.+|+.+|.+|++.|. +++++|.+.-....+..+.... ... +...+....+.+..+ .+++-+....
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~i-np~v~v~~~~ 102 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEI-NSDVRVEAIV 102 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHH-CCCcEEEEEe
Confidence 3589999999999999999999998 8999999864443333221000 000 000011112222222 1555555554
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
... ..+.+.+ .+..-++|||++.. +.....+.+.+.+.++-++.+.+.|
T Consensus 103 ~~~-~~~~~~~---~~~~~DlVid~~Dn-~~~r~~ln~~~~~~~iP~i~~~~~g 151 (339)
T PRK07688 103 QDV-TAEELEE---LVTGVDLIIDATDN-FETRFIVNDAAQKYGIPWIYGACVG 151 (339)
T ss_pred ccC-CHHHHHH---HHcCCCEEEEcCCC-HHHHHHHHHHHHHhCCCEEEEeeee
Confidence 321 1222223 34456999999764 3444445566667788777665443
No 304
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.13 E-value=0.018 Score=58.37 Aligned_cols=70 Identities=13% Similarity=0.182 Sum_probs=49.2
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee--eCCHHHHHhccCCCcEEEEecC
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~--~~s~~e~~~~l~~~dvIil~vp 81 (503)
|+|.|+| .|.+|+.++..|.++||+|.+.+|++++...+...+.. +.. ..+++.+.+.++.+|+||.++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~-----~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAE-----LVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCE-----EEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 4899998 59999999999999999999999998765444332211 111 1244445455556899888754
No 305
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.12 E-value=0.014 Score=59.87 Aligned_cols=93 Identities=16% Similarity=0.239 Sum_probs=56.0
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEE---EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEKGFPIS---VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~G~~V~---v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
|++|+|+|+ |..|..|.+.|.+++|.+. .. ++.++..+........ +.+... +..++ ++ +|++|+++|
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v-~s~~~aG~~l~~~~~~--l~~~~~-~~~~~-~~---vD~vFla~p 75 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLL-ASSESAGHSVPFAGKN--LRVREV-DSFDF-SQ---VQLAFFAAG 75 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEE-ECcccCCCeeccCCcc--eEEeeC-ChHHh-cC---CCEEEEcCC
Confidence 469999996 9999999999998777532 23 2222221111110010 012212 22333 44 999999999
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
.+ .....+..+. ..|..|||.|+.+
T Consensus 76 ~~-~s~~~v~~~~---~~G~~VIDlS~~f 100 (336)
T PRK05671 76 AA-VSRSFAEKAR---AAGCSVIDLSGAL 100 (336)
T ss_pred HH-HHHHHHHHHH---HCCCeEEECchhh
Confidence 75 4455555543 3688999999765
No 306
>PRK07454 short chain dehydrogenase; Provisional
Probab=96.10 E-value=0.036 Score=53.42 Aligned_cols=92 Identities=17% Similarity=0.269 Sum_probs=58.3
Q ss_pred CCcCCCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 1 MEASALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 1 M~~~~~~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
|+...++++-|.| .|.+|..++..|+++|++|.+.+|++++.+++.+... +.-.. ..++..=
T Consensus 1 ~~~~~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--------------~~~~~---~~~~~~D 63 (241)
T PRK07454 1 MSLNSMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELR--------------STGVK---AAAYSID 63 (241)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--------------hCCCc---EEEEEcc
Confidence 5555566788887 4999999999999999999999999877665543210 00001 2222222
Q ss_pred cCCChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+.+...+...++.+.....+=+++|++...
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~id~lv~~ag~ 93 (241)
T PRK07454 64 LSNPEAIAPGIAELLEQFGCPDVLINNAGM 93 (241)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 334445555666665544445677776543
No 307
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=96.09 E-value=0.0083 Score=57.44 Aligned_cols=80 Identities=18% Similarity=0.269 Sum_probs=51.2
Q ss_pred CcEEEEcccHHHHHHHHHH--HhCCCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 7 SRIGLAGLAVMGQNLALNV--AEKGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L--~~~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
.+|+|||+|.+|..++..+ ...|+++. ++|+++++...... + ..+....++.++++. ..+|.|++|+|..
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~-g-----~~v~~~~~l~~li~~-~~iD~ViIa~P~~ 157 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIG-G-----IPVYHIDELEEVVKE-NDIEIGILTVPAE 157 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeC-C-----eEEcCHHHHHHHHHH-CCCCEEEEeCCch
Confidence 4799999999999999863 35688766 57988765432111 1 012223455666543 2489999999986
Q ss_pred hhHHHHHHHHH
Q 010702 84 SPVDQTIAALS 94 (503)
Q Consensus 84 ~~v~~vl~~l~ 94 (503)
...++.+.+.
T Consensus 158 -~~~~i~~~l~ 167 (213)
T PRK05472 158 -AAQEVADRLV 167 (213)
T ss_pred -hHHHHHHHHH
Confidence 3445554443
No 308
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.08 E-value=0.076 Score=56.71 Aligned_cols=120 Identities=17% Similarity=0.143 Sum_probs=71.5
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh--HHHHHHHhhcccCCCCeeee---CCHHHHHhccCCCcEEEEec--
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS--KVDETLDRAHREGQLPLTGH---YTPRDFVLSIQRPRSVIILV-- 80 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~--~~~~l~~~~~~~g~~~i~~~---~s~~e~~~~l~~~dvIil~v-- 80 (503)
.|.|||+|..|.++|+.|.+.|++|+++|..+. ..+++.+... ++... .+. +.+.+ +|+||.+-
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~-----g~~~~~~~~~~-~~~~~---~d~vV~sp~i 78 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFP-----DVELRCGGFDC-ELLVQ---ASEIIISPGL 78 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcC-----CcEEEeCCCCh-HHhcC---CCEEEECCCC
Confidence 599999999999999999999999999997643 2233433100 12221 233 33344 88887753
Q ss_pred CCChh-HHHHH---------HHHHhc-CCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCC
Q 010702 81 KAGSP-VDQTI---------AALSEH-MSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (503)
Q Consensus 81 p~~~~-v~~vl---------~~l~~~-l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg 136 (503)
|.+.+ +.... -+++.. +....|-|..|++...++.-+...|...|..+.-++..|.
T Consensus 79 ~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggnig~ 145 (448)
T PRK03803 79 ALDTPALRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGT 145 (448)
T ss_pred CCCCHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCcCH
Confidence 33322 22221 133322 2333466667777766666677777777765554444443
No 309
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=96.06 E-value=0.092 Score=53.56 Aligned_cols=99 Identities=13% Similarity=0.161 Sum_probs=60.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCCh--hHHHHH----HHhhcccCCCCeeeeCCHHHHHhccCC
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRTT--SKVDET----LDRAHREGQLPLTGHYTPRDFVLSIQR 72 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~--~~~~~l----~~~~~~~g~~~i~~~~s~~e~~~~l~~ 72 (503)
.||+|||+ |.+|.++|..|...|. ++.++|+++ ++++.. ........ .++....+..+.+++
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~-~~~~i~~~~~~~~~d--- 79 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLL-AGVVATTDPEEAFKD--- 79 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhcccccc-CCcEEecChHHHhCC---
Confidence 58999998 9999999999998885 799999964 222221 11110000 012222333333344
Q ss_pred CcEEEEecCC----Ch-----------hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 73 PRSVIILVKA----GS-----------PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 73 ~dvIil~vp~----~~-----------~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
||+||++.-. +. .++++...+.++.++..+|+..||-
T Consensus 80 aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNP 131 (323)
T TIGR01759 80 VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNP 131 (323)
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCc
Confidence 9999998632 11 1444556666666547777777764
No 310
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.06 E-value=0.018 Score=58.97 Aligned_cols=110 Identities=16% Similarity=0.227 Sum_probs=71.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhC-C-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEK-G-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~-G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
++|.|+|+ |.||+.+++.|+.+ | .++++++|+.++...+..+... .. ..++++.... +|+|+.+....
T Consensus 156 k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~-----~~-i~~l~~~l~~---aDiVv~~ts~~ 226 (340)
T PRK14982 156 ATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGG-----GK-ILSLEEALPE---ADIVVWVASMP 226 (340)
T ss_pred CEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhcc-----cc-HHhHHHHHcc---CCEEEECCcCC
Confidence 57999998 89999999999864 5 5899999999888877654311 01 1245555554 99999887553
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVS 134 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvs 134 (503)
..+ +++. ..+.++.+++|.+-- .+.... +...|++.++.++.
T Consensus 227 ~~~--~I~~--~~l~~~~~viDiAvP--RDVd~~---v~~~~V~v~~gG~V 268 (340)
T PRK14982 227 KGV--EIDP--ETLKKPCLMIDGGYP--KNLDTK---VQGPGIHVLKGGIV 268 (340)
T ss_pred cCC--cCCH--HHhCCCeEEEEecCC--CCCCcc---cCCCCEEEEeCCcc
Confidence 221 1211 124688999998743 333321 12367888876654
No 311
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=96.06 E-value=0.029 Score=53.15 Aligned_cols=125 Identities=13% Similarity=0.237 Sum_probs=70.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc-cc--CCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-RE--GQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~-~~--g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
..+|.|||+|.+|..++.+|+..|. +++++|.+.-....+..+.. .. ...+...+....+.++.+ .+++-+..+.
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~l-Np~v~i~~~~ 97 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQEL-NPNVKLSIVE 97 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHH-CCCCEEEEEe
Confidence 3689999999999999999999997 59999877533222221100 00 000000011112222222 2666666654
Q ss_pred CChh-HHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 82 AGSP-VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 82 ~~~~-v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
.... ..+-..++ +.+-++||++... +.....+.+.+.++++-|+.+.+.|
T Consensus 98 ~~~~~~~~~~~~~---~~~~dvVi~~~d~-~~~~~~ln~~c~~~~ip~i~~~~~G 148 (198)
T cd01485 98 EDSLSNDSNIEEY---LQKFTLVIATEEN-YERTAKVNDVCRKHHIPFISCATYG 148 (198)
T ss_pred cccccchhhHHHH---HhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEeec
Confidence 4211 01122223 3455899988543 4555566777888888888776544
No 312
>PRK05442 malate dehydrogenase; Provisional
Probab=96.04 E-value=0.072 Score=54.40 Aligned_cols=99 Identities=15% Similarity=0.141 Sum_probs=59.9
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCChh--HHH----HHHHhh-cccCCCCeeeeCCHHHHHhcc
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRTTS--KVD----ETLDRA-HREGQLPLTGHYTPRDFVLSI 70 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~~--~~~----~l~~~~-~~~g~~~i~~~~s~~e~~~~l 70 (503)
..||+|||+ |.+|.++|..|+..|. ++.++|+++. +++ ++.... .... ++....+..+.+++
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~--~~~i~~~~y~~~~d- 80 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLA--GVVITDDPNVAFKD- 80 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcC--CcEEecChHHHhCC-
Confidence 358999998 9999999999988764 6999999543 221 122111 0000 12333333333444
Q ss_pred CCCcEEEEecCC----Ch-----------hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 71 QRPRSVIILVKA----GS-----------PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 71 ~~~dvIil~vp~----~~-----------~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+|+||++.-. +. .++++...+.++.++..++|..||-
T Consensus 81 --aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNP 132 (326)
T PRK05442 81 --ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNP 132 (326)
T ss_pred --CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 9999997632 21 1344445666666567788877764
No 313
>PLN02477 glutamate dehydrogenase
Probab=95.98 E-value=0.048 Score=57.24 Aligned_cols=114 Identities=17% Similarity=0.148 Sum_probs=72.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEE-EEeCC----------hhHHHHHHHhhcccCCC-CeeeeCCHHHHHhccCCCc
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPIS-VYNRT----------TSKVDETLDRAHREGQL-PLTGHYTPRDFVLSIQRPR 74 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~-v~dr~----------~~~~~~l~~~~~~~g~~-~i~~~~s~~e~~~~l~~~d 74 (503)
++|+|.|.|++|+.+|+.|.+.|.+|+ +.|.+ .+.+.+..+.......+ +... -+.+++... +||
T Consensus 207 ~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~-i~~~e~l~~--~~D 283 (410)
T PLN02477 207 QTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDP-IDPDDILVE--PCD 283 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceE-ecCccceec--ccc
Confidence 589999999999999999999999988 77876 55443333221100000 0111 133444432 489
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 75 SVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 75 vIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
+++-|--.+.-..+.+.. + +=++|+...|... +.+..+.|.++|+.|+.
T Consensus 284 vliP~Al~~~I~~~na~~----i-~ak~I~egAN~p~--t~ea~~~L~~rGI~~~P 332 (410)
T PLN02477 284 VLIPAALGGVINKENAAD----V-KAKFIVEAANHPT--DPEADEILRKKGVVVLP 332 (410)
T ss_pred EEeeccccccCCHhHHHH----c-CCcEEEeCCCCCC--CHHHHHHHHHCCcEEEC
Confidence 888775544222233333 3 4478888888764 55677889999998874
No 314
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=95.97 E-value=0.018 Score=53.13 Aligned_cols=84 Identities=18% Similarity=0.294 Sum_probs=57.7
Q ss_pred CCCcEEEEcccHHHHHHHH-HHH-hCCCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 5 ALSRIGLAGLAVMGQNLAL-NVA-EKGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~-~L~-~~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
.+.++.|||.|++|++++- ++. ++|+++. +||.+++++-..... +.+.-.++++..++. .+.|+.|+|||
T Consensus 83 ~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~------v~V~~~d~le~~v~~-~dv~iaiLtVP 155 (211)
T COG2344 83 KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGD------VPVYDLDDLEKFVKK-NDVEIAILTVP 155 (211)
T ss_pred cceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCC------eeeechHHHHHHHHh-cCccEEEEEcc
Confidence 3468999999999999984 344 6788754 799999865432221 123444566666663 13799999999
Q ss_pred CChhHHHHHHHHHhc
Q 010702 82 AGSPVDQTIAALSEH 96 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~ 96 (503)
.. ...++.+.|...
T Consensus 156 a~-~AQ~vad~Lv~a 169 (211)
T COG2344 156 AE-HAQEVADRLVKA 169 (211)
T ss_pred HH-HHHHHHHHHHHc
Confidence 84 667777776653
No 315
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=95.97 E-value=0.058 Score=54.72 Aligned_cols=125 Identities=20% Similarity=0.237 Sum_probs=73.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC--------CCcE--E-EEeCChhHHHHHHHhhcccCCCCeeeeCCH-----HHHHhc
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEK--------GFPI--S-VYNRTTSKVDETLDRAHREGQLPLTGHYTP-----RDFVLS 69 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~--------G~~V--~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~-----~e~~~~ 69 (503)
..+|+|+|+|.+|+++++.|.++ |.++ + +.+|+......+.-... .....++ .+++..
T Consensus 3 ~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 76 (333)
T COG0460 3 TVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNA------EVWTTDGALSLGDEVLLD 76 (333)
T ss_pred eEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccch------hhheecccccccHhhhcc
Confidence 46899999999999999999875 3343 2 45776654431100000 0122233 344432
Q ss_pred cCCCcEEEEecCC-ChhHHHHHHHHHhcCCCCCEEEecCCCChhhH-HHHHHHHHhcCcc-EecccCCCChh
Q 010702 70 IQRPRSVIILVKA-GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNT-ERRIHEASQKGLL-YLGMGVSGGEE 138 (503)
Q Consensus 70 l~~~dvIil~vp~-~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t-~~~~~~l~~~gi~-~i~~pvsgg~~ 138 (503)
+..|+|+.+++. -...+. ++.+...+..|..||.......... .++.+..++.|.. +.++.|.||-+
T Consensus 77 -~~~dvvve~~~~d~~~~~~-~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~yEAtV~gGiP 146 (333)
T COG0460 77 -EDIDVVVELVGGDVEPAEP-ADLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKLLYEATVGGGIP 146 (333)
T ss_pred -ccCCEEEecCcccCCchhh-HHHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeEEEEeeeccCcc
Confidence 346899998876 444555 6677777888999886544322111 1344444555654 56777877754
No 316
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=95.96 E-value=0.034 Score=47.00 Aligned_cols=86 Identities=16% Similarity=0.164 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhHHH-HHHHHHh
Q 010702 17 MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQ-TIAALSE 95 (503)
Q Consensus 17 mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v~~-vl~~l~~ 95 (503)
-+..|+..|.+.|.+|.+||..-.......... .. ++...+++++.++. +|.||++++.. ..+. -.+++..
T Consensus 18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~-~~---~~~~~~~~~~~~~~---~D~vvl~t~h~-~f~~l~~~~~~~ 89 (106)
T PF03720_consen 18 PALELIEELKERGAEVSVYDPYVDEEEIKELGK-LE---GVEVCDDLEEALKG---ADAVVLATDHD-EFRELDWEEIAK 89 (106)
T ss_dssp HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCH-HH---CEEEESSHHHHHTT---ESEEEESS--G-GGGCCGHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEECCccChHHHHhhCC-cc---ceEEecCHHHHhcC---CCEEEEEecCH-HHhccCHHHHHH
Confidence 456789999999999999998866544333110 01 36778899998887 99999999986 4444 3467777
Q ss_pred cCCCCCEEEecCCCC
Q 010702 96 HMSPGDCIIDGGNEW 110 (503)
Q Consensus 96 ~l~~g~iIId~st~~ 110 (503)
.+.++.+|+|+-+..
T Consensus 90 ~~~~~~~iiD~~~~~ 104 (106)
T PF03720_consen 90 LMRKPPVIIDGRNIL 104 (106)
T ss_dssp HSCSSEEEEESSSTS
T ss_pred hcCCCCEEEECcccc
Confidence 778899999997754
No 317
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.94 E-value=0.031 Score=55.67 Aligned_cols=74 Identities=18% Similarity=0.243 Sum_probs=56.8
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||-| .+|.++|..|.++|..|+++.... .++.+.++. +|+||.++....-
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t---------------------~~l~~~~~~---ADIvV~AvG~p~~ 213 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT---------------------KDLSFYTQN---ADIVCVGVGKPDL 213 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc---------------------HHHHHHHHh---CCEEEEecCCCCc
Confidence 579999998 999999999999999999985322 133455555 9999999977543
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+. ..++++|.+|||.+...
T Consensus 214 i~------~~~vk~GavVIDvGi~~ 232 (285)
T PRK14191 214 IK------ASMVKKGAVVVDIGINR 232 (285)
T ss_pred CC------HHHcCCCcEEEEeeccc
Confidence 22 12468999999998654
No 318
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=95.93 E-value=0.093 Score=55.72 Aligned_cols=120 Identities=19% Similarity=0.130 Sum_probs=71.2
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH-HHH---HHHhhcccCCCCeeee--CCHHHHHhccCCCcEEEEec-
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK-VDE---TLDRAHREGQLPLTGH--YTPRDFVLSIQRPRSVIILV- 80 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~---l~~~~~~~g~~~i~~~--~s~~e~~~~l~~~dvIil~v- 80 (503)
||.|||+|..|.++|+.|.+.|++|+++|..+.. ... +.+.. . ++... .+ .+.+.. +|+||.+-
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~--~---gi~~~~g~~-~~~~~~---~d~vv~sp~ 71 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLN--E---GSVLHTGLH-LEDLNN---ADLVVKSPG 71 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhc--c---CcEEEecCc-hHHhcc---CCEEEECCC
Confidence 5899999999999999999999999999976542 211 22110 0 12222 23 333343 89888763
Q ss_pred -CCCh-hHHHHH---------HHHH-hcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCC
Q 010702 81 -KAGS-PVDQTI---------AALS-EHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (503)
Q Consensus 81 -p~~~-~v~~vl---------~~l~-~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg 136 (503)
|.+. .+.... .+++ ..+....|-|..|++...++.-+...|+..|..+.-++-.|.
T Consensus 72 i~~~~p~~~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gnig~ 139 (433)
T TIGR01087 72 IPPDHPLVQAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNIGT 139 (433)
T ss_pred CCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECccCH
Confidence 3332 222221 1222 223334566777777776776677788877766544443333
No 319
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=95.93 E-value=0.026 Score=54.38 Aligned_cols=70 Identities=14% Similarity=0.232 Sum_probs=52.0
Q ss_pred EEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhH--HHHHHHhhcccCCCCeee-eCCHHHHHhccCCCcEEEEecCC
Q 010702 9 IGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSK--VDETLDRAHREGQLPLTG-HYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 9 IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~--~~~l~~~~~~~g~~~i~~-~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
|.|+|+ |.+|+.++..|.+.+++|.+.-|++.+ .+.+.+.+... +.. ..+.+.+.+.|+.+|.||++++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~v----v~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEV----VEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEE----EES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceE----eecccCCHHHHHHHHcCCceEEeecCc
Confidence 789995 999999999999999999999998743 55555554321 111 33566777777779999999884
No 320
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=95.92 E-value=0.015 Score=58.67 Aligned_cols=77 Identities=35% Similarity=0.633 Sum_probs=59.0
Q ss_pred hCCCCHHHHHHHHHHhccCC-cchhHHhhhhhhccccccCCCchh-HHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHH
Q 010702 212 VGGLSNAELAEIFDEWNKGE-LESFLVEITADIFKVKDEYGEGEL-VDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (503)
Q Consensus 212 ~g~~~~~~i~~~~~~~~~g~-~~s~l~~~~~~~l~~~~~~~~~~~-ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~A 289 (503)
.| +|++++.++ |+.+. ++|++++...+++..+ +.+. +..+.++ +.+.+|++++|.+.|+|+|+++++
T Consensus 199 ~g-ld~~~~~~~---~~~~~~~~s~~l~~~~~~~~~~----~~~~~~~~~~kd---~~~~~~~~~~A~~~~~~~P~~~~a 267 (301)
T PRK09599 199 FD-LDLAAVAEV---WRRGSVIRSWLLDLTADALAED----PKLDEISGYVED---SGEGRWTVEEAIDLAVPAPVIAAA 267 (301)
T ss_pred CC-CCHHHHHHH---HhCCcHHHHHHHHHHHHHHhcC----CCHHHHHHHHHh---hCcHHHHHHHHHHcCCCHHHHHHH
Confidence 77 999988887 56664 6999999999988643 2222 4444555 345589999999999999999998
Q ss_pred HHHHHHhcch
Q 010702 290 LDCRYLSGLK 299 (503)
Q Consensus 290 v~~r~~s~~~ 299 (503)
+..|+.+...
T Consensus 268 ~~~~~~~~~~ 277 (301)
T PRK09599 268 LFMRFRSRQE 277 (301)
T ss_pred HHHHHHhccC
Confidence 8888887654
No 321
>PRK09414 glutamate dehydrogenase; Provisional
Probab=95.91 E-value=0.05 Score=57.67 Aligned_cols=117 Identities=10% Similarity=0.032 Sum_probs=76.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEE-e----------CChhHHHHHHHhh--cccCC---CCeeeeCCHHHHHhcc
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVY-N----------RTTSKVDETLDRA--HREGQ---LPLTGHYTPRDFVLSI 70 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~-d----------r~~~~~~~l~~~~--~~~g~---~~i~~~~s~~e~~~~l 70 (503)
++|+|.|.|++|+.+|+.|.+.|.+|+.. | .+.+.+.+..+.. ...+. .+.. ..+.+++...
T Consensus 233 ~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~-~i~~~~i~~~- 310 (445)
T PRK09414 233 KRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAE-YLEGGSPWSV- 310 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCe-ecCCcccccc-
Confidence 58999999999999999999999998866 7 6666554443321 00000 0001 1133333331
Q ss_pred CCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 71 QRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 71 ~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
+||+++-|...+....+....+.. .+=++|+...|... +.+..+.|.++|+.++.
T Consensus 311 -d~DVliPaAl~n~It~~~a~~i~~--~~akiIvEgAN~p~--t~~A~~~L~~rGI~~vP 365 (445)
T PRK09414 311 -PCDIALPCATQNELDEEDAKTLIA--NGVKAVAEGANMPS--TPEAIEVFLEAGVLFAP 365 (445)
T ss_pred -CCcEEEecCCcCcCCHHHHHHHHH--cCCeEEEcCCCCCC--CHHHHHHHHHCCcEEEC
Confidence 499999998876544555555543 13368888888754 56677888999998774
No 322
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=95.91 E-value=0.074 Score=53.42 Aligned_cols=106 Identities=14% Similarity=0.213 Sum_probs=77.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcchh
Q 010702 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDP 404 (503)
Q Consensus 325 ~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~~~ 404 (503)
.++++.+|.++|.+.++.+..++|++.+..+. ++|.+++.++++.+ ..+|.+++.....+.+. +.. +
T Consensus 165 ~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~------Gi~~~~~~~~l~~~-~~~s~~~~~~~~~~~~~-d~~-----~ 231 (296)
T PRK11559 165 IGAGNVTKLANQVIVALNIAAMSEALVLATKA------GVNPDLVYQAIRGG-LAGSTVLDAKAPMVMDR-NFK-----P 231 (296)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhcC-cccCHHHHhhchHhhcC-CCC-----C
Confidence 36788999999999999999999999998743 39999999999976 55677666543322221 111 1
Q ss_pred hHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhc
Q 010702 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYR 445 (503)
Q Consensus 405 ~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~ 445 (503)
.|. +.-...+++-++..|-+.|+|+|.+.++...|+...
T Consensus 232 ~f~--~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~~~ 270 (296)
T PRK11559 232 GFR--IDLHIKDLANALDTSHGVGAPLPLTAAVMEMMQALK 270 (296)
T ss_pred Ccc--hHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 121 222334567888999999999999999998766543
No 323
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.91 E-value=0.098 Score=56.70 Aligned_cols=117 Identities=15% Similarity=0.054 Sum_probs=69.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh--HHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe--cC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS--KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VK 81 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~--~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~--vp 81 (503)
.++|.|+|+|..|.++|+.|.+.|++|+++|.... ..+.+.+.+... .+.......+.+.. +|+||.. +|
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~---~~~~g~~~~~~~~~---~d~vv~sp~I~ 80 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDA---EFVGGPFDPALLDG---VDLVALSPGLS 80 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCc---EEEeCCCchhHhcC---CCEEEECCCCC
Confidence 35799999999999999999999999999997542 233444332100 12222222344444 8998886 44
Q ss_pred CC-----hhHHHH-------------HHHHHhcC-----CCCCEEEecCCCChhhHHHHHHHHHhcCccE
Q 010702 82 AG-----SPVDQT-------------IAALSEHM-----SPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (503)
Q Consensus 82 ~~-----~~v~~v-------------l~~l~~~l-----~~g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (503)
.. ..+... +..++..+ .+..|-|..|++.-.++.-+...|...|...
T Consensus 81 ~~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~~ 150 (498)
T PRK02006 81 PLEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKKV 150 (498)
T ss_pred CcccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCE
Confidence 42 122111 11222111 1235667777777777766777777776543
No 324
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=95.86 E-value=0.03 Score=56.68 Aligned_cols=82 Identities=12% Similarity=0.224 Sum_probs=54.4
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 5 ALSRIGLAG-LAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 5 ~~~~IgIIG-lG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
|+.+|+||| .|..|..|.+.|.++.+ ++.....+..+ .+ .+.++..++ +|++|+|+|.
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~--------------~~---~~~~~~~~~---~DvvFlalp~ 60 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK--------------DA---AARRELLNA---ADVAILCLPD 60 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC--------------cc---cCchhhhcC---CCEEEECCCH
Confidence 467999999 59999999999998863 33322222111 01 122333344 8999999999
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+ ...+...++. ..|..|||.|+..
T Consensus 61 ~-~s~~~~~~~~---~~g~~VIDlSadf 84 (313)
T PRK11863 61 D-AAREAVALID---NPATRVIDASTAH 84 (313)
T ss_pred H-HHHHHHHHHH---hCCCEEEECChhh
Confidence 6 4455555553 3689999999753
No 325
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=95.85 E-value=0.083 Score=56.01 Aligned_cols=100 Identities=13% Similarity=0.129 Sum_probs=62.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhC-------CC--cEEEEeCChhHHHHHHHhhcccC--C-CCeeeeCCHHHHHhccCCC
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEK-------GF--PISVYNRTTSKVDETLDRAHREG--Q-LPLTGHYTPRDFVLSIQRP 73 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~-------G~--~V~v~dr~~~~~~~l~~~~~~~g--~-~~i~~~~s~~e~~~~l~~~ 73 (503)
-||+|||+ |.+|.++|..|+.. |. ++.++|++.++++...-...... . .++....+..+..++ +
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kd---a 177 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQD---A 177 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCc---C
Confidence 47999999 99999999999988 65 68899999887654332111000 0 023333333333444 9
Q ss_pred cEEEEecCC----Ch-----------hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 74 RSVIILVKA----GS-----------PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 74 dvIil~vp~----~~-----------~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
|+||++.-. +. .++++...|.++..+..+||..||-
T Consensus 178 DiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNP 228 (444)
T PLN00112 178 EWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNP 228 (444)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCc
Confidence 999998633 11 1334445565644567778878764
No 326
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.81 E-value=0.14 Score=54.50 Aligned_cols=115 Identities=16% Similarity=0.092 Sum_probs=67.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH----HHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEec--
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK----VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV-- 80 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~----~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v-- 80 (503)
++|.|+|.|.+|.+.|+.|++.|++|+++|++... .+.+.+.+. .+.......++... .+|+||.+.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~-----~~~~~~~~~~~~~~--~~d~vV~s~gi 78 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGI-----KVICGSHPLELLDE--DFDLMVKNPGI 78 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCC-----EEEeCCCCHHHhcC--cCCEEEECCCC
Confidence 57999999999999999999999999999987532 233333221 12211233443321 278887754
Q ss_pred CCChh-HHHHH---------HHHHhcC-CCCCEEEecCCCChhhHHHHHHHHHhcCccE
Q 010702 81 KAGSP-VDQTI---------AALSEHM-SPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (503)
Q Consensus 81 p~~~~-v~~vl---------~~l~~~l-~~g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (503)
|.+.. ++... .++...+ ....|-|..|++...++.-+...|+..|...
T Consensus 79 ~~~~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~ 137 (447)
T PRK02472 79 PYTNPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGGQHA 137 (447)
T ss_pred CCCCHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCCCCe
Confidence 33222 22221 1222222 3345666677777666666667777666433
No 327
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=95.76 E-value=0.028 Score=57.80 Aligned_cols=91 Identities=14% Similarity=0.244 Sum_probs=57.0
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCCCc---EEEE--eCChhHHHHHHHhhcccCCCCeeeeC-CHHHHHhccCCCcEEE
Q 010702 5 ALSRIGLAGL-AVMGQNLALNVAEKGFP---ISVY--NRTTSKVDETLDRAHREGQLPLTGHY-TPRDFVLSIQRPRSVI 77 (503)
Q Consensus 5 ~~~~IgIIGl-G~mG~~lA~~L~~~G~~---V~v~--dr~~~~~~~l~~~~~~~g~~~i~~~~-s~~e~~~~l~~~dvIi 77 (503)
+.+||+|||+ |..|..|.+.|.+.+|. +... .|+..+.-.. .+ . .+.... +.+++ +. +|+||
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~--~~-~----~~~v~~~~~~~~-~~---~D~vf 74 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF--EG-R----DYTVEELTEDSF-DG---VDIAL 74 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee--cC-c----eeEEEeCCHHHH-cC---CCEEE
Confidence 3468999995 99999999999998874 3222 3333322111 11 1 122222 33333 44 99999
Q ss_pred EecCCChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+++|.+ ...+....+. ..|..|||.|+.+
T Consensus 75 ~a~p~~-~s~~~~~~~~---~~g~~VIDlS~~f 103 (344)
T PLN02383 75 FSAGGS-ISKKFGPIAV---DKGAVVVDNSSAF 103 (344)
T ss_pred ECCCcH-HHHHHHHHHH---hCCCEEEECCchh
Confidence 999996 4455555443 3689999999754
No 328
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=95.74 E-value=0.057 Score=53.72 Aligned_cols=109 Identities=13% Similarity=0.108 Sum_probs=71.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
.++.|+|+|-.+++++..|++.|. +|+++||++++.+.+.+... ... ..++ . ...+|+||-|+|.+-.
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~------~~~---~~~~-~-~~~~dlvINaTp~Gm~ 191 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYG------YEW---RPDL-G-GIEADILVNVTPIGMA 191 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhC------Ccc---hhhc-c-cccCCEEEECCccccC
Confidence 369999999999999999999997 59999999999988876421 111 1111 1 1238999999986521
Q ss_pred --HH--H-HHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 86 --VD--Q-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 86 --v~--~-vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
.+ . .++ ...++++.+++|.--.. ..| .+.+..+++|...++
T Consensus 192 ~~~~~~~~pi~--~~~l~~~~~v~D~vY~P-~~T-~ll~~A~~~G~~~i~ 237 (272)
T PRK12550 192 GGPEADKLAFP--EAEIDAASVVFDVVALP-AET-PLIRYARARGKTVIT 237 (272)
T ss_pred CCCccccCCCC--HHHcCCCCEEEEeecCC-ccC-HHHHHHHHCcCeEeC
Confidence 00 0 111 12367788999986543 333 345556666765543
No 329
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.74 E-value=0.045 Score=51.79 Aligned_cols=123 Identities=15% Similarity=0.196 Sum_probs=70.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhccc-CCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHRE-GQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~-g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
..+|.|||+|.+|+.++++|+..|. +++++|.+.-....+..+.... ...+-..+....+.++.+ .+++-+.+.+..
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~l-Np~v~i~~~~~~ 99 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRAL-NPRVKVSVDTDD 99 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHH-CCCCEEEEEecC
Confidence 3689999999999999999999997 5999987753332222110000 000000111122222222 266666665432
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
+.+...++ +..-++||+++. .+..-..+.+.+.++++-|+.+.+.|
T Consensus 100 --~~~~~~~~---~~~~dvVi~~~~-~~~~~~~ln~~c~~~~ip~i~~~~~G 145 (197)
T cd01492 100 --ISEKPEEF---FSQFDVVVATEL-SRAELVKINELCRKLGVKFYATGVHG 145 (197)
T ss_pred --ccccHHHH---HhCCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 22222222 234478888754 34555566777788888888877654
No 330
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=95.74 E-value=0.054 Score=54.62 Aligned_cols=98 Identities=15% Similarity=0.187 Sum_probs=58.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHH----HhhcccCCCCeeeeC--CHHHHHhccCCCcEEEE
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETL----DRAHREGQLPLTGHY--TPRDFVLSIQRPRSVII 78 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~----~~~~~~g~~~i~~~~--s~~e~~~~l~~~dvIil 78 (503)
+||+|||+|.+|+++|..|...+. ++.++|++.++.+-.. ...... ........ +.++ ++.+|+|++
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~-~~~~~i~~~~~y~~----~~~aDiVvi 75 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPL-GSDVKITGDGDYED----LKGADIVVI 75 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhc-cCceEEecCCChhh----hcCCCEEEE
Confidence 589999999999999999987764 7999999965433221 110000 00122222 2333 334999999
Q ss_pred ec--C--CCh-----------hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 79 LV--K--AGS-----------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 79 ~v--p--~~~-----------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+. | ++. .++++..++.... ++.+++-.||-.
T Consensus 76 tAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~-~d~ivlVvtNPv 121 (313)
T COG0039 76 TAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYA-PDAIVLVVTNPV 121 (313)
T ss_pred eCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCeEEEEecCcH
Confidence 87 2 221 2334445566655 466777777643
No 331
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=95.73 E-value=0.054 Score=48.27 Aligned_cols=74 Identities=16% Similarity=0.235 Sum_probs=51.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|+|- ...|.++|..|.+.|.+|++++++. .++++.+++ +|+|+.++.....
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t---------------------~~l~~~v~~---ADIVvsAtg~~~~ 84 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT---------------------IQLQSKVHD---ADVVVVGSPKPEK 84 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC---------------------cCHHHHHhh---CCEEEEecCCCCc
Confidence 45777763 6667777777777777777766432 155666666 9999999987532
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
++ ..++++|.+|+|.+...
T Consensus 85 i~------~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 85 VP------TEWIKPGATVINCSPTK 103 (140)
T ss_pred cC------HHHcCCCCEEEEcCCCc
Confidence 22 23578999999988765
No 332
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.71 E-value=0.13 Score=55.42 Aligned_cols=112 Identities=16% Similarity=0.096 Sum_probs=65.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh-HH----HHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEec-
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS-KV----DETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV- 80 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~----~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v- 80 (503)
++|.|||.|..|..+|..|++.|++|+++|+++. .. +.+.+.+. .+....... .. ..+|+||++.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv-----~~~~~~~~~-~~---~~~D~Vv~s~G 87 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGA-----TVRLGPGPT-LP---EDTDLVVTSPG 87 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCC-----EEEECCCcc-cc---CCCCEEEECCC
Confidence 4799999999999999999999999999996653 22 22333221 121112222 22 2389999875
Q ss_pred --CCChhHHHHH---------HHHH-hcCCC----CCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 81 --KAGSPVDQTI---------AALS-EHMSP----GDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 81 --p~~~~v~~vl---------~~l~-~~l~~----g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
|+...+...- -+++ ..+.+ ..|-|..|++...++.-+...++..|..
T Consensus 88 i~~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~ 150 (480)
T PRK01438 88 WRPDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAGLR 150 (480)
T ss_pred cCCCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcCCC
Confidence 2222222111 1222 22222 2466677777766666666777766544
No 333
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.69 E-value=0.037 Score=55.10 Aligned_cols=73 Identities=15% Similarity=0.254 Sum_probs=56.4
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+++.|||-+. +|.++|..|...|..|++++... .++.+...+ +|+||.++.-+..
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T---------------------~~l~~~~~~---ADIvv~AvG~p~~ 220 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT---------------------DDLKKYTLD---ADILVVATGVKHL 220 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC---------------------CCHHHHHhh---CCEEEEccCCccc
Confidence 5799999888 99999999999999999998421 245555665 9999998865432
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+. ...+++|.+|||.+..
T Consensus 221 i~------~~~vk~gavVIDvGin 238 (287)
T PRK14176 221 IK------ADMVKEGAVIFDVGIT 238 (287)
T ss_pred cC------HHHcCCCcEEEEeccc
Confidence 22 1257899999999875
No 334
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=95.63 E-value=0.032 Score=52.20 Aligned_cols=89 Identities=19% Similarity=0.123 Sum_probs=60.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeee--CC----HHHHHhccCCCcEEEEe
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH--YT----PRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~--~s----~~e~~~~l~~~dvIil~ 79 (503)
++|.|||- ..+|.+||..|.++|..|+++|.+.-.. +...+.. +-..+ .+ +.+.+.+ +|+||.+
T Consensus 63 K~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~--~~~~~~~----~hs~t~~~~~~~~l~~~~~~---ADIVIsA 133 (197)
T cd01079 63 KTITIINRSEVVGRPLAALLANDGARVYSVDINGIQV--FTRGESI----RHEKHHVTDEEAMTLDCLSQ---SDVVITG 133 (197)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccc--ccccccc----ccccccccchhhHHHHHhhh---CCEEEEc
Confidence 57999995 6789999999999999999998654322 1111000 00011 12 4555555 9999999
Q ss_pred cCCChh-HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 80 VKAGSP-VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 80 vp~~~~-v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
++.... +. ...+++|.+|||.+...
T Consensus 134 vG~~~~~i~------~d~ik~GavVIDVGi~~ 159 (197)
T cd01079 134 VPSPNYKVP------TELLKDGAICINFASIK 159 (197)
T ss_pred cCCCCCccC------HHHcCCCcEEEEcCCCc
Confidence 987643 22 13477999999998764
No 335
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=95.62 E-value=0.15 Score=54.53 Aligned_cols=109 Identities=14% Similarity=0.139 Sum_probs=67.3
Q ss_pred cEEEEcccHHHHH-HHHHHHhCCCcEEEEeCChhH-HHHHHHhhcccCCCCeeeeC-CHHHHHhccCCCcEEEEec--CC
Q 010702 8 RIGLAGLAVMGQN-LALNVAEKGFPISVYNRTTSK-VDETLDRAHREGQLPLTGHY-TPRDFVLSIQRPRSVIILV--KA 82 (503)
Q Consensus 8 ~IgIIGlG~mG~~-lA~~L~~~G~~V~v~dr~~~~-~~~l~~~~~~~g~~~i~~~~-s~~e~~~~l~~~dvIil~v--p~ 82 (503)
+|-|||.|..|.+ +|+.|++.|++|+++|.+... .+.+.+.+ +.... ...+.+. .+|+||.+- |.
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~g-------i~~~~g~~~~~~~---~~d~vV~spgi~~ 70 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALG-------IPIYIGHSAENLD---DADVVVVSAAIKD 70 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCc-------CEEeCCCCHHHCC---CCCEEEECCCCCC
Confidence 4789999999998 999999999999999976542 23343322 33322 1122333 389888753 33
Q ss_pred C-hhHHHHH---------HHHH-hcC-CCCCEEEecCCCChhhHHHHHHHHHhcCc
Q 010702 83 G-SPVDQTI---------AALS-EHM-SPGDCIIDGGNEWYLNTERRIHEASQKGL 126 (503)
Q Consensus 83 ~-~~v~~vl---------~~l~-~~l-~~g~iIId~st~~~~~t~~~~~~l~~~gi 126 (503)
+ ..+.... -+++ ..+ ....|-|..|++...++.-+...++..|.
T Consensus 71 ~~p~~~~a~~~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~ 126 (448)
T TIGR01082 71 DNPEIVEAKERGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAGL 126 (448)
T ss_pred CCHHHHHHHHcCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcCC
Confidence 2 2233221 1232 222 23356777788887777777777887774
No 336
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.60 E-value=0.066 Score=54.62 Aligned_cols=99 Identities=14% Similarity=0.152 Sum_probs=58.2
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCCh--hHHHHHHHhhccc--CCC-CeeeeCCHHHHHhccCCCc
Q 010702 8 RIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRTT--SKVDETLDRAHRE--GQL-PLTGHYTPRDFVLSIQRPR 74 (503)
Q Consensus 8 ~IgIIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~--~~~~~l~~~~~~~--g~~-~i~~~~s~~e~~~~l~~~d 74 (503)
||+|||+ |.+|..+|..|+..|. ++.++|+++ +..+.....-... ... ......+..+.+++ +|
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~---aD 78 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKD---VD 78 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCC---CC
Confidence 7999999 9999999999998663 499999987 4322111000000 000 12222344444554 99
Q ss_pred EEEEecCC----Ch-----------hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 75 SVIILVKA----GS-----------PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 75 vIil~vp~----~~-----------~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+||++.-. +. .++++...+.++..++.++|-.||-
T Consensus 79 iVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNP 128 (323)
T cd00704 79 VAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNP 128 (323)
T ss_pred EEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 99988632 11 1344445666664456666667653
No 337
>PRK08223 hypothetical protein; Validated
Probab=95.59 E-value=0.055 Score=53.98 Aligned_cols=125 Identities=19% Similarity=0.206 Sum_probs=70.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc-cCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
..+|.|||+|-+|+.+|.+|+..|. ++.++|.+.=....+..+-.. ....+-.-+....+.+.++. +++=|.+.+..
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iN-P~v~V~~~~~~ 105 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDIN-PELEIRAFPEG 105 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHC-CCCEEEEEecc
Confidence 3589999999999999999999997 688998875444333322100 00000011122223333221 44444444432
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCC-hhhHHHHHHHHHhcCccEecccCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEW-YLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~-~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
- ..+-+.++ +..-|+|||++... ...-..+.+.+...++-++.+.+.|
T Consensus 106 l-~~~n~~~l---l~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g 154 (287)
T PRK08223 106 I-GKENADAF---LDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLG 154 (287)
T ss_pred c-CccCHHHH---HhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccC
Confidence 1 12222333 33458999987653 2333445566777888888775554
No 338
>PRK07326 short chain dehydrogenase; Provisional
Probab=95.55 E-value=0.082 Score=50.66 Aligned_cols=42 Identities=14% Similarity=0.239 Sum_probs=35.6
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 47 (503)
.++|-|+|. |.+|..+++.|+++|++|.+.+|++++.+++.+
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~ 48 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAA 48 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHH
Confidence 356888884 999999999999999999999999887665543
No 339
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.55 E-value=0.082 Score=54.04 Aligned_cols=97 Identities=13% Similarity=0.124 Sum_probs=58.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCC-------CcEEEEeCChh--HHHHH----HHhh-cccCCCCeeeeCCHHHHHhccC
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKG-------FPISVYNRTTS--KVDET----LDRA-HREGQLPLTGHYTPRDFVLSIQ 71 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G-------~~V~v~dr~~~--~~~~l----~~~~-~~~g~~~i~~~~s~~e~~~~l~ 71 (503)
.||+|+|+ |.+|..++..|+..+ .+|.++|+++. +.+.. .... ...+ ++....++.+.+++
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~--~~~~~~~~~~~l~~-- 78 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLK--SVVATTDPEEAFKD-- 78 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccC--CceecCCHHHHhCC--
Confidence 47999999 999999999999854 48999999653 12111 1000 0000 12233454444454
Q ss_pred CCcEEEEecCC----Ch-----------hHHHHHHHHHhcCCCCCEEEecCC
Q 010702 72 RPRSVIILVKA----GS-----------PVDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 72 ~~dvIil~vp~----~~-----------~v~~vl~~l~~~l~~g~iIId~st 108 (503)
+|+||++.-. +. .++++...+.++..++.++|-.||
T Consensus 79 -aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 79 -VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN 129 (325)
T ss_pred -CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 9999988522 11 123344566666556777777776
No 340
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.52 E-value=0.048 Score=53.25 Aligned_cols=123 Identities=14% Similarity=0.167 Sum_probs=71.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhccc-CCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHRE-GQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~-g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.+|.|+|+|.+|+.+|.+|++.|. +++++|.+.-....+..+.... ...+-.-+....+.+.++ .+++-+..++..-
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~i-np~v~i~~~~~~i 103 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQI-NPHIAINPINAKL 103 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHH-CCCcEEEEEeccC
Confidence 589999999999999999999996 6889998865444333221000 000000011112222221 2566666665421
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
. .+.+. ..+..-++|||++-. +.....+.+.+.+.++-|+.+.+.|
T Consensus 104 ~-~~~~~---~~~~~~DlVvd~~D~-~~~r~~ln~~~~~~~ip~v~~~~~g 149 (240)
T TIGR02355 104 D-DAELA---ALIAEHDIVVDCTDN-VEVRNQLNRQCFAAKVPLVSGAAIR 149 (240)
T ss_pred C-HHHHH---HHhhcCCEEEEcCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 1 12222 334566899998765 3444445666777788888765554
No 341
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.52 E-value=0.043 Score=54.47 Aligned_cols=74 Identities=15% Similarity=0.215 Sum_probs=57.0
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||-+ .+|.++|..|.++|..|+++.... .++.+.++. +|+||.++....-
T Consensus 158 k~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T---------------------~~l~~~~~~---ADIvV~AvGkp~~ 213 (281)
T PRK14183 158 KDVCVVGASNIVGKPMAALLLNANATVDICHIFT---------------------KDLKAHTKK---ADIVIVGVGKPNL 213 (281)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------------------cCHHHHHhh---CCEEEEecCcccc
Confidence 579999987 999999999999999999885321 245556666 9999999976542
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+. ..++++|.+|||.+...
T Consensus 214 i~------~~~vk~gavvIDvGin~ 232 (281)
T PRK14183 214 IT------EDMVKEGAIVIDIGINR 232 (281)
T ss_pred cC------HHHcCCCcEEEEeeccc
Confidence 22 13578999999998754
No 342
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.52 E-value=0.076 Score=51.67 Aligned_cols=84 Identities=14% Similarity=0.291 Sum_probs=56.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEE--EEecCCC
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSV--IILVKAG 83 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvI--il~vp~~ 83 (503)
++|-|.|. |.+|..++..|+++|++|.+.+|+++..+++.+.... . . +++. ..-+.+.
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--------------~--~---~~~~~~~~Dl~~~ 68 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINK--------------A--G---GKAIGVAMDVTNE 68 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHh--------------c--C---ceEEEEECCCCCH
Confidence 45778876 9999999999999999999999998776665543110 0 0 2222 2223344
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
..++++++++.....+-++||++...
T Consensus 69 ~~~~~~~~~~~~~~~~~d~vi~~ag~ 94 (262)
T PRK13394 69 DAVNAGIDKVAERFGSVDILVSNAGI 94 (262)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 45666666666555556788887654
No 343
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=95.51 E-value=0.048 Score=52.76 Aligned_cols=124 Identities=12% Similarity=0.123 Sum_probs=69.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhccc-CCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHRE-GQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~-g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
..+|.|||+|.+|+.+|.+|+..|. +++++|.+.=....+..+.... ...+-..+....+.+..+ .+++-+...+..
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~~~i~~~~~~ 99 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAI-NPDVEIEAYNER 99 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHh-CCCCEEEEecce
Confidence 3589999999999999999999997 6889987754333332211000 000000111122222221 145555555443
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
- ..+-+.++ +..-++||++.-. +..-..+.+.+.+.++-|+.+++.|
T Consensus 100 i-~~~~~~~~---~~~~DvVi~~~d~-~~~r~~l~~~~~~~~ip~i~~g~~g 146 (228)
T cd00757 100 L-DAENAEEL---IAGYDLVLDCTDN-FATRYLINDACVKLGKPLVSGAVLG 146 (228)
T ss_pred e-CHHHHHHH---HhCCCEEEEcCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 1 12222223 3445889988653 4444445666777788888877655
No 344
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=95.49 E-value=0.21 Score=49.07 Aligned_cols=117 Identities=15% Similarity=0.099 Sum_probs=71.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEE-EEe----------CChhHHHHHHHhhcccCC--------C-CeeeeCCHHHH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPIS-VYN----------RTTSKVDETLDRAHREGQ--------L-PLTGHYTPRDF 66 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~-v~d----------r~~~~~~~l~~~~~~~g~--------~-~i~~~~s~~e~ 66 (503)
.+|.|.|.|++|+..|+.|.+.|.+|+ +.| .+.+.+..+.+.....+. . +.+. -+.+++
T Consensus 39 ~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~-~~~~~~ 117 (254)
T cd05313 39 KRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKY-FEGKKP 117 (254)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEE-eCCcch
Confidence 589999999999999999999999987 556 223333332211100000 0 0122 244455
Q ss_pred HhccCCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 67 ~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
... +||+++-|--.+.-..+.+..|.. .+=++|+...|... +.+..+.|.++|+.|+.
T Consensus 118 ~~~--~~DIliPcAl~~~I~~~na~~i~~--~~ak~I~EgAN~p~--t~~a~~~L~~rGI~vvP 175 (254)
T cd05313 118 WEV--PCDIAFPCATQNEVDAEDAKLLVK--NGCKYVAEGANMPC--TAEAIEVFRQAGVLFAP 175 (254)
T ss_pred hcC--CCcEEEeccccccCCHHHHHHHHH--cCCEEEEeCCCCCC--CHHHHHHHHHCCcEEEC
Confidence 442 489988886554333333344432 13368888888764 33677789999998874
No 345
>PRK05884 short chain dehydrogenase; Provisional
Probab=95.48 E-value=0.16 Score=48.63 Aligned_cols=42 Identities=10% Similarity=0.240 Sum_probs=36.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR 48 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~ 48 (503)
||+-|.|. |.+|..+++.|++.|++|.+.+|++++.+++.+.
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~ 43 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKE 43 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh
Confidence 36888875 9999999999999999999999999887766543
No 346
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.46 E-value=0.06 Score=55.60 Aligned_cols=97 Identities=9% Similarity=0.181 Sum_probs=59.4
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHh-hcc------cCC-CCeee-eCCHHHHHhccCCCc
Q 010702 6 LSRIGLAG-LAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDR-AHR------EGQ-LPLTG-HYTPRDFVLSIQRPR 74 (503)
Q Consensus 6 ~~~IgIIG-lG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~-~~~------~g~-~~i~~-~~s~~e~~~~l~~~d 74 (503)
++||+|+| .|.+|..+.+.|.++.. ++..+.+++....+.... ... .+. ..+.. ..+++++ .+ +|
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~---~D 78 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAV-DD---VD 78 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHHh-cC---CC
Confidence 47999998 89999999999998764 777775665432211110 000 000 01112 1244443 44 99
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 75 SVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 75 vIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+|+.++|.+ ...+..+.+. ..|..+||.|...
T Consensus 79 vVf~a~p~~-~s~~~~~~~~---~~G~~vIDls~~f 110 (349)
T PRK08664 79 IVFSALPSD-VAGEVEEEFA---KAGKPVFSNASAH 110 (349)
T ss_pred EEEEeCChh-HHHHHHHHHH---HCCCEEEECCchh
Confidence 999999996 4444544443 3678899998754
No 347
>PRK08265 short chain dehydrogenase; Provisional
Probab=95.40 E-value=0.13 Score=50.43 Aligned_cols=88 Identities=10% Similarity=0.129 Sum_probs=56.0
Q ss_pred CCcCCCCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 1 MEASALSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 1 M~~~~~~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
|.+-..+++-|.|. |.+|..+|+.|++.|++|++.+|++++.+++.+... .. ..++..=
T Consensus 1 m~~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D 60 (261)
T PRK08265 1 MIGLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLG-----------------ER---ARFIATD 60 (261)
T ss_pred CCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----------------Ce---eEEEEec
Confidence 54433356777775 999999999999999999999999877665543210 00 2222223
Q ss_pred cCCChhHHHHHHHHHhcCCCCCEEEecCC
Q 010702 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iIId~st 108 (503)
+.+...++.+++.+.....+=+++|++..
T Consensus 61 l~~~~~~~~~~~~~~~~~g~id~lv~~ag 89 (261)
T PRK08265 61 ITDDAAIERAVATVVARFGRVDILVNLAC 89 (261)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 34444566666666554444467776654
No 348
>PRK10537 voltage-gated potassium channel; Provisional
Probab=95.40 E-value=0.21 Score=52.35 Aligned_cols=113 Identities=12% Similarity=0.158 Sum_probs=69.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh--ccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~--~l~~~dvIil~vp~~~ 84 (503)
..|-|+|.|.+|..+++.|.+.|++|.+.+.+. .++..+.+.. -+.+..+-++..+ .+++++.|+++.+++.
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~--~~~~~~~g~~----vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~ 314 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQRGQAVTVIVPLG--LEHRLPDDAD----LIPGDSSDSAVLKKAGAARARAILALRDNDA 314 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHCCCCEEEEECch--hhhhccCCCc----EEEeCCCCHHHHHhcCcccCCEEEEcCCChH
Confidence 358899999999999999999999999998763 2333322211 1333334444443 4567999998888764
Q ss_pred hHHHHHHHHHhcCCC-CCEEEecCCCChhhHHHHHHHHHhcCccEeccc
Q 010702 85 PVDQTIAALSEHMSP-GDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~-g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (503)
....++..... +.+ ..+|+-..+. +..+.++..|+..+=.|
T Consensus 315 ~Nl~ivL~ar~-l~p~~kIIa~v~~~------~~~~~L~~~GaD~VIsp 356 (393)
T PRK10537 315 DNAFVVLAAKE-MSSDVKTVAAVNDS------KNLEKIKRVHPDMIFSP 356 (393)
T ss_pred HHHHHHHHHHH-hCCCCcEEEEECCH------HHHHHHHhcCCCEEECH
Confidence 43333333333 334 4566655442 23445566677665444
No 349
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.40 E-value=0.26 Score=52.51 Aligned_cols=114 Identities=14% Similarity=0.036 Sum_probs=68.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH--HHHHHHhhcccCCCCeeee--CCHHHHHhccCCCcEEEEec--
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK--VDETLDRAHREGQLPLTGH--YTPRDFVLSIQRPRSVIILV-- 80 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~--~~~l~~~~~~~g~~~i~~~--~s~~e~~~~l~~~dvIil~v-- 80 (503)
++|.|+|.|..|.+.|+.|++.|++|+++|.++.. .+++.+.. . ++... ...++.... +|+||.+.
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~--~---gi~~~~g~~~~~~~~~---~d~vv~spgi 77 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMF--D---GLVFYTGRLKDALDNG---FDILALSPGI 77 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhcc--C---CcEEEeCCCCHHHHhC---CCEEEECCCC
Confidence 57999999999999999999999999999976543 33333210 0 12221 212333334 89998864
Q ss_pred CCC-hhHHHHH---------HHHH-hcCC---CCCEEEecCCCChhhHHHHHHHHHhcCccE
Q 010702 81 KAG-SPVDQTI---------AALS-EHMS---PGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (503)
Q Consensus 81 p~~-~~v~~vl---------~~l~-~~l~---~g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (503)
|++ ..+.... -+++ ..+. ...|-|..|++...++.-+...|...|...
T Consensus 78 ~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~ 139 (445)
T PRK04308 78 SERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDT 139 (445)
T ss_pred CCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCe
Confidence 322 2232221 1222 2221 235667777777766766777777777653
No 350
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=95.33 E-value=0.16 Score=52.91 Aligned_cols=100 Identities=13% Similarity=0.161 Sum_probs=60.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC-c----EE--EE--eCChhHHHHHHHhhccc--CCC-CeeeeCCHHHHHhccCCC
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGF-P----IS--VY--NRTTSKVDETLDRAHRE--GQL-PLTGHYTPRDFVLSIQRP 73 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~-~----V~--v~--dr~~~~~~~l~~~~~~~--g~~-~i~~~~s~~e~~~~l~~~ 73 (503)
-||+|||+ |.+|.++|..|+..|. + |. ++ |++.++++...-.-... ..+ ++....+..+.+++ +
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kd---a 121 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFED---A 121 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCC---C
Confidence 48999999 9999999999998774 2 33 44 88887755433211000 000 23333333333444 9
Q ss_pred cEEEEecCC----Ch-----------hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 74 RSVIILVKA----GS-----------PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 74 dvIil~vp~----~~-----------~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
|+||++.-. +. .++++...+.++..+..+||..||-
T Consensus 122 DIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNP 172 (387)
T TIGR01757 122 DWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNP 172 (387)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCc
Confidence 999997532 11 1344445666666577788888764
No 351
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.32 E-value=0.061 Score=53.60 Aligned_cols=74 Identities=15% Similarity=0.254 Sum_probs=57.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||- ..+|.++|..|.++|..|+++.... .++++...+ +|+||.++....-
T Consensus 156 k~vvViGrS~iVGkPla~lL~~~~aTVtichs~T---------------------~~l~~~~~~---ADIvIsAvGkp~~ 211 (287)
T PRK14173 156 KEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT---------------------QDLPAVTRR---ADVLVVAVGRPHL 211 (287)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEecCCcCc
Confidence 57999995 7899999999999999999886331 245666666 9999999977543
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+. ..++++|.+|||.+...
T Consensus 212 i~------~~~vk~GavVIDVGin~ 230 (287)
T PRK14173 212 IT------PEMVRPGAVVVDVGINR 230 (287)
T ss_pred cC------HHHcCCCCEEEEccCcc
Confidence 22 23578999999998764
No 352
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=95.32 E-value=0.089 Score=48.99 Aligned_cols=73 Identities=16% Similarity=0.207 Sum_probs=46.3
Q ss_pred cEEEEcccHHHHHHH--HHHHhC----CCcEEEEeCChhHHHHHH---Hhhcc-cC-CCCeeeeCCHHHHHhccCCCcEE
Q 010702 8 RIGLAGLAVMGQNLA--LNVAEK----GFPISVYNRTTSKVDETL---DRAHR-EG-QLPLTGHYTPRDFVLSIQRPRSV 76 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA--~~L~~~----G~~V~v~dr~~~~~~~l~---~~~~~-~g-~~~i~~~~s~~e~~~~l~~~dvI 76 (503)
||+|||.|..-.+.- ..+... +-++.++|+|+++++... +.... .+ .+++..+++.+++++. +|+|
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~g---ADfV 77 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEG---ADFV 77 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTT---ESEE
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCC---CCEE
Confidence 699999998776632 233322 237899999999876432 21111 00 2367888999999988 9999
Q ss_pred EEecCCC
Q 010702 77 IILVKAG 83 (503)
Q Consensus 77 il~vp~~ 83 (503)
|.++..+
T Consensus 78 i~~irvG 84 (183)
T PF02056_consen 78 INQIRVG 84 (183)
T ss_dssp EE---TT
T ss_pred EEEeeec
Confidence 9998554
No 353
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=95.31 E-value=0.12 Score=52.26 Aligned_cols=95 Identities=12% Similarity=0.106 Sum_probs=57.8
Q ss_pred EEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhccc---CCCCeeeeCCHHHHHhccCCCcEEEEecCCC--
Q 010702 11 LAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHRE---GQLPLTGHYTPRDFVLSIQRPRSVIILVKAG-- 83 (503)
Q Consensus 11 IIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~---g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~-- 83 (503)
|||+|.+|.++|..|+..+. ++.++|++.++++......... -..+.+...+..+..++ +|+||++.-.+
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~d---aDivVitag~~rk 77 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKD---ADLVVITAGAPQK 77 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCC---CCEEEECCCCCCC
Confidence 69999999999999998886 6999999887654333211100 00022333232333343 99999976331
Q ss_pred --h-----------hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 84 --S-----------PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 84 --~-----------~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
. .++++.+.+..+ .+..+||..||-
T Consensus 78 ~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP 115 (299)
T TIGR01771 78 PGETRLELVGRNVRIMKSIVPEVVKS-GFDGIFLVATNP 115 (299)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCH
Confidence 1 134444566665 466778777764
No 354
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.26 E-value=0.064 Score=53.75 Aligned_cols=74 Identities=14% Similarity=0.232 Sum_probs=57.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||- ..+|.++|..|.++|..|+++... +.++++.+.+ +|+||.++.-+.-
T Consensus 159 k~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~---------------------T~~l~~~~~~---ADIvIsAvGkp~~ 214 (297)
T PRK14186 159 KKAVVVGRSILVGKPLALMLLAANATVTIAHSR---------------------TQDLASITRE---ADILVAAAGRPNL 214 (297)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEccCCcCc
Confidence 57999995 789999999999999999998532 1355666666 9999999986542
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+. ..++++|.+|||.+...
T Consensus 215 i~------~~~ik~gavVIDvGin~ 233 (297)
T PRK14186 215 IG------AEMVKPGAVVVDVGIHR 233 (297)
T ss_pred cC------HHHcCCCCEEEEecccc
Confidence 22 13578999999998764
No 355
>PRK07774 short chain dehydrogenase; Provisional
Probab=95.25 E-value=0.12 Score=49.95 Aligned_cols=87 Identities=13% Similarity=0.086 Sum_probs=56.7
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.++|-|.|. |.+|..+++.|+++|++|.+.+|+++..+.+.+..... -.. ...+..-+.+..
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~Dl~~~~ 68 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVAD--------------GGT---AIAVQVDVSDPD 68 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCc---EEEEEcCCCCHH
Confidence 356888886 99999999999999999999999987655544321000 000 122223334445
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
.++.+++.+.....+=++||++...
T Consensus 69 ~~~~~~~~~~~~~~~id~vi~~ag~ 93 (250)
T PRK07774 69 SAKAMADATVSAFGGIDYLVNNAAI 93 (250)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCC
Confidence 5666666666555555788887764
No 356
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.25 E-value=0.068 Score=53.15 Aligned_cols=74 Identities=14% Similarity=0.234 Sum_probs=57.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||- ..+|.++|..|.++|..|+++... +.++++.+.+ +|+||.++....-
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVtichs~---------------------T~~l~~~~~~---ADIvI~AvG~~~~ 213 (284)
T PRK14170 158 KRAVVIGRSNIVGKPVAQLLLNENATVTIAHSR---------------------TKDLPQVAKE---ADILVVATGLAKF 213 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEecCCcCc
Confidence 57999995 678999999999999999998532 1355666666 9999999987643
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+. ..++++|.+|||.+...
T Consensus 214 i~------~~~vk~GavVIDvGin~ 232 (284)
T PRK14170 214 VK------KDYIKPGAIVIDVGMDR 232 (284)
T ss_pred cC------HHHcCCCCEEEEccCcc
Confidence 22 13478999999998764
No 357
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=95.25 E-value=0.071 Score=54.88 Aligned_cols=97 Identities=11% Similarity=0.097 Sum_probs=55.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCC-CcEEEE-eCChhHHHHHHHhhc------ccCCC-CeeeeCCHHHHHhccCCCcEE
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKG-FPISVY-NRTTSKVDETLDRAH------REGQL-PLTGHYTPRDFVLSIQRPRSV 76 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G-~~V~v~-dr~~~~~~~l~~~~~------~~g~~-~i~~~~s~~e~~~~l~~~dvI 76 (503)
+||+|+|+ |.||..+++.|.++. ++|... +++...-+.+.+... ..+.+ .+.......+... ++|+|
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~DvV 77 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASK---DVDIV 77 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhc---cCCEE
Confidence 48999995 999999999998877 576655 554332122211100 00000 0111111122223 49999
Q ss_pred EEecCCChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 77 IILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
++++|.+ ...++...+. ..|..|||.|...
T Consensus 78 f~a~p~~-~s~~~~~~~~---~~G~~VIDlsg~f 107 (341)
T TIGR00978 78 FSALPSE-VAEEVEPKLA---EAGKPVFSNASNH 107 (341)
T ss_pred EEeCCHH-HHHHHHHHHH---HCCCEEEECChhh
Confidence 9999986 3444444443 3688899998763
No 358
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=95.24 E-value=0.13 Score=56.25 Aligned_cols=113 Identities=20% Similarity=0.201 Sum_probs=70.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh-
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP- 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~- 85 (503)
+++-|+|.|-+|++++..|++.|.+|+++||+.++.+.+.+.... ......+..+... ..+|+|+-++|.+-.
T Consensus 380 k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~----~~~~~~~~~~~~~--~~~diiINtT~vGm~~ 453 (529)
T PLN02520 380 KLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGG----QALTLADLENFHP--EEGMILANTTSVGMQP 453 (529)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCC----ceeeHhHhhhhcc--ccCeEEEecccCCCCC
Confidence 468899999999999999999999999999999998888754211 1111222222111 126788877776521
Q ss_pred -HHH-HHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEe
Q 010702 86 -VDQ-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 86 -v~~-vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (503)
.+. -+. ...+++..+++|..-... .| .+.+..+++|...+
T Consensus 454 ~~~~~pl~--~~~l~~~~~v~D~vY~P~-~T-~ll~~A~~~G~~~~ 495 (529)
T PLN02520 454 NVDETPIS--KHALKHYSLVFDAVYTPK-IT-RLLREAEESGAIIV 495 (529)
T ss_pred CCCCCccc--HhhCCCCCEEEEeccCCC-cC-HHHHHHHHCCCeEe
Confidence 010 111 123667889999865443 33 34445556665443
No 359
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.22 E-value=0.071 Score=53.06 Aligned_cols=74 Identities=15% Similarity=0.255 Sum_probs=57.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||- ..+|.++|..|.++|..|++++... .++++...+ +|+||.++.-..-
T Consensus 160 k~vvViGrS~iVGkPla~lL~~~~atVt~chs~T---------------------~~l~~~~~~---ADIvIsAvGk~~~ 215 (284)
T PRK14177 160 KNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT---------------------QNLPSIVRQ---ADIIVGAVGKPEF 215 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEeCCCcCc
Confidence 57999995 7899999999999999999997331 245556666 9999999977543
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+. ...+++|.+|||.+...
T Consensus 216 i~------~~~ik~gavVIDvGin~ 234 (284)
T PRK14177 216 IK------ADWISEGAVLLDAGYNP 234 (284)
T ss_pred cC------HHHcCCCCEEEEecCcc
Confidence 22 23578999999998754
No 360
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=95.21 E-value=0.075 Score=52.79 Aligned_cols=35 Identities=23% Similarity=0.237 Sum_probs=31.7
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHH
Q 010702 8 RIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKV 42 (503)
Q Consensus 8 ~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~ 42 (503)
+|.|+|. |.+|+.++..|.+.|++|.+..|++++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~ 36 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSS 36 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccc
Confidence 4789986 9999999999999999999999998754
No 361
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=95.20 E-value=0.14 Score=49.58 Aligned_cols=82 Identities=13% Similarity=0.214 Sum_probs=54.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
|+|-|+|. |.+|..+|..|++.|++|.+.+|++++.+.+..... .. ..++-.-+.+...
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~Dl~~~~~ 60 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELG-----------------DN---LYIAQLDVRNRAA 60 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc-----------------cc---eEEEEecCCCHHH
Confidence 46889984 999999999999999999999999887665543210 01 2223233444455
Q ss_pred HHHHHHHHHhcCCCCCEEEecCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st 108 (503)
++++++++.....+=+++|.+..
T Consensus 61 i~~~~~~~~~~~~~id~vi~~ag 83 (248)
T PRK10538 61 IEEMLASLPAEWRNIDVLVNNAG 83 (248)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 66666666555544567776654
No 362
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.19 E-value=0.066 Score=53.11 Aligned_cols=74 Identities=12% Similarity=0.249 Sum_probs=57.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+++.|||- ..+|.++|..|.++|..|++++.. +.++.+.+.+ +|+||.++.-..-
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~AtVt~chs~---------------------T~~l~~~~~~---ADIvIsAvGkp~~ 214 (278)
T PRK14172 159 KEVVVIGRSNIVGKPVAQLLLNENATVTICHSK---------------------TKNLKEVCKK---ADILVVAIGRPKF 214 (278)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEcCCCcCc
Confidence 57999995 789999999999999999999742 1255666666 9999999987643
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+. ..++++|.+|||.+...
T Consensus 215 i~------~~~ik~gavVIDvGin~ 233 (278)
T PRK14172 215 ID------EEYVKEGAIVIDVGTSS 233 (278)
T ss_pred cC------HHHcCCCcEEEEeeccc
Confidence 22 13478999999997654
No 363
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=95.19 E-value=0.054 Score=55.31 Aligned_cols=35 Identities=14% Similarity=0.336 Sum_probs=31.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTS 40 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~ 40 (503)
.++|-|||+|.||.-.+++|.++|. +|++.||+..
T Consensus 174 ~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~ 209 (338)
T PRK00676 174 KASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQL 209 (338)
T ss_pred CCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 3589999999999999999999996 5999999975
No 364
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=95.13 E-value=0.23 Score=49.59 Aligned_cols=105 Identities=14% Similarity=0.173 Sum_probs=80.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHH-HHHhcCCCCCCCcch
Q 010702 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIK-KAYQRNPNLASLVVD 403 (503)
Q Consensus 325 ~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~-~~~~~~~~~~~ll~~ 403 (503)
.+.|+.+|+++|=+-.+.++.++|++.+-+++ ++|.+.+.++-++| --+|+.++.-. ..++++. +
T Consensus 164 ~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~------Gld~~~~~~vi~~~-~~~s~~~e~~~~~m~~~~~-------~ 229 (286)
T COG2084 164 VGAGQAAKLANNILLAGNIAALAEALALAEKA------GLDPDVVLEVISGG-AAGSWILENYGPRMLEGDF-------S 229 (286)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhcc-ccCChHHHhhcchhhcCCC-------C
Confidence 37899999999999999999999999998854 39999999999887 34788777632 2222221 1
Q ss_pred hhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhc
Q 010702 404 PEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYR 445 (503)
Q Consensus 404 ~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~ 445 (503)
+-| .++-...+++-+...|.+.|+|+|..+.+.+.|+...
T Consensus 230 p~F--~v~~~~KDl~la~~~A~~~g~~lP~~~~~~~ly~~~~ 269 (286)
T COG2084 230 PGF--AVDLMLKDLGLALDAAKELGAPLPLTALAAELYAKAA 269 (286)
T ss_pred cch--hHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Confidence 233 2234456678888999999999999999999777544
No 365
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.13 E-value=0.071 Score=53.00 Aligned_cols=74 Identities=15% Similarity=0.292 Sum_probs=56.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||- ..+|.++|..|.++|..|+++... +.++++...+ +|+||.++.-+.-
T Consensus 157 k~vvViGrS~iVGkPla~lL~~~~atVtichs~---------------------T~~l~~~~~~---ADIvI~AvG~p~~ 212 (282)
T PRK14169 157 KRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSK---------------------TRNLKQLTKE---ADILVVAVGVPHF 212 (282)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEECCC---------------------CCCHHHHHhh---CCEEEEccCCcCc
Confidence 57999995 789999999999999999998532 1245555666 9999999987643
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+. ..++++|.+|||.+...
T Consensus 213 i~------~~~vk~GavVIDvGin~ 231 (282)
T PRK14169 213 IG------ADAVKPGAVVIDVGISR 231 (282)
T ss_pred cC------HHHcCCCcEEEEeeccc
Confidence 22 13578999999998754
No 366
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.13 E-value=0.12 Score=50.65 Aligned_cols=123 Identities=14% Similarity=0.161 Sum_probs=68.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc-cCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
..+|.|||+|.+|+.++.+|+..|. +++++|.+.-....+..+... ....+-..+....+.+..+ .+++-+.+.+..
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~l-np~v~i~~~~~~ 110 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARI-NPHIAIETINAR 110 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHH-CCCCEEEEEecc
Confidence 3589999999999999999999997 788998875444333322100 0000001111122222221 155556665542
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVS 134 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvs 134 (503)
-. .+-+.+ .+..-++|||++-. +..-..+.+.+.+.++-|+.+.+.
T Consensus 111 i~-~~~~~~---~~~~~DiVi~~~D~-~~~r~~ln~~~~~~~ip~v~~~~~ 156 (245)
T PRK05690 111 LD-DDELAA---LIAGHDLVLDCTDN-VATRNQLNRACFAAKKPLVSGAAI 156 (245)
T ss_pred CC-HHHHHH---HHhcCCEEEecCCC-HHHHHHHHHHHHHhCCEEEEeeec
Confidence 11 222222 34456899998754 333334555666778877776544
No 367
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.12 E-value=0.07 Score=52.99 Aligned_cols=74 Identities=14% Similarity=0.203 Sum_probs=56.3
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||-+ ..|.++|..|...|.+|+++.++.. ++.+.+.. +|+||.+++-..-
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~---------------------~L~~~~~~---ADIvI~Avgk~~l 208 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKTE---------------------NLKAELRQ---ADILVSAAGKAGF 208 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhCCCeeEEEecChh---------------------HHHHHHhh---CCEEEECCCcccc
Confidence 579999998 9999999999999999999986532 34444555 9999999975422
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+. .+ .+++|.+|||.+...
T Consensus 209 v~---~~---~vk~GavVIDVgi~~ 227 (279)
T PRK14178 209 IT---PD---MVKPGATVIDVGINQ 227 (279)
T ss_pred cC---HH---HcCCCcEEEEeeccc
Confidence 21 22 258999999998653
No 368
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=95.12 E-value=0.12 Score=51.03 Aligned_cols=87 Identities=15% Similarity=0.220 Sum_probs=59.0
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 5 ALSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 5 ~~~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
+++++-|-|+ +-+|..+|+.|+++||+|.+..|+.++++++.++-... .. ++ ++++-+=+.+.
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~--------~~----v~----v~vi~~DLs~~ 68 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDK--------TG----VE----VEVIPADLSDP 68 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHh--------hC----ce----EEEEECcCCCh
Confidence 4456777786 99999999999999999999999999999888653211 00 01 33333334444
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGG 107 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~s 107 (503)
..+..+.+++.....+=+++|++.
T Consensus 69 ~~~~~l~~~l~~~~~~IdvLVNNA 92 (265)
T COG0300 69 EALERLEDELKERGGPIDVLVNNA 92 (265)
T ss_pred hHHHHHHHHHHhcCCcccEEEECC
Confidence 566667777766533446677653
No 369
>PRK12939 short chain dehydrogenase; Provisional
Probab=95.11 E-value=0.14 Score=49.40 Aligned_cols=86 Identities=13% Similarity=0.129 Sum_probs=55.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|-|+|. |.+|..+|..|++.|++|.+.+|++++.+.+.+... ..-.. .+++..=+.+...
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~--------------~~~~~---~~~~~~Dl~~~~~ 70 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALE--------------AAGGR---AHAIAADLADPAS 70 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH--------------hcCCc---EEEEEccCCCHHH
Confidence 56888885 999999999999999999999999887665543210 00001 2222222334445
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
++.+++++.....+-++||++...
T Consensus 71 ~~~~~~~~~~~~~~id~vi~~ag~ 94 (250)
T PRK12939 71 VQRFFDAAAAALGGLDGLVNNAGI 94 (250)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 566666665544455777777654
No 370
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.10 E-value=0.25 Score=52.89 Aligned_cols=115 Identities=17% Similarity=0.087 Sum_probs=64.4
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH-HH----HHHHhhcccCCCCeeeeCCHH--HHHhccCCCcEEEEec
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK-VD----ETLDRAHREGQLPLTGHYTPR--DFVLSIQRPRSVIILV 80 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~-~~----~l~~~~~~~g~~~i~~~~s~~--e~~~~l~~~dvIil~v 80 (503)
||.|||+|..|.+.|+.|++.|++|.++|+++.. .. .+.+.+. .+..-.... .+-..++++|.|+.+-
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi-----~~~~g~~~~~~~~~~~~~~~d~vv~s~ 76 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGI-----TVKLGKPLELESFQPWLDQPDLVVVSP 76 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCC-----EEEECCccchhhhhHHhhcCCEEEECC
Confidence 6999999999999999999999999999976532 22 2333221 121111111 1111123389888753
Q ss_pred --CCCh-hHHHHHH---------HH-HhcCCC-CCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 81 --KAGS-PVDQTIA---------AL-SEHMSP-GDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 81 --p~~~-~v~~vl~---------~l-~~~l~~-g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
|.+. .+....+ ++ .....+ ..|-|..|++...++.-+...+...|..
T Consensus 77 gi~~~~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~~g~~ 137 (459)
T PRK02705 77 GIPWDHPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQAAGLN 137 (459)
T ss_pred CCCCCCHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcCCC
Confidence 2221 2221111 11 122222 3456667777766666666777776654
No 371
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.10 E-value=1.3 Score=45.91 Aligned_cols=159 Identities=13% Similarity=0.130 Sum_probs=91.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCC---------------Ce---eeeCCHHHH
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQL---------------PL---TGHYTPRDF 66 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~---------------~i---~~~~s~~e~ 66 (503)
|.+|-|+|+|..+-.+|..|.+.+. +|-+.+|...+-+.+.+.-...+.+ .. ....+.+++
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i 80 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEI 80 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHh
Confidence 3589999999999999999998875 6999999887777665432221000 00 112334444
Q ss_pred HhccCCCcEEEEecCCChhHHHHHHHHHhc-CCCCCEEEecCCCChhhHHHHHHHHHhcC--ccEe------c-ccCCCC
Q 010702 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEH-MSPGDCIIDGGNEWYLNTERRIHEASQKG--LLYL------G-MGVSGG 136 (503)
Q Consensus 67 ~~~l~~~dvIil~vp~~~~v~~vl~~l~~~-l~~g~iIId~st~~~~~t~~~~~~l~~~g--i~~i------~-~pvsgg 136 (503)
..+ =|.+|+|||.+ +-.+|+++|-+. |..=+.||-.|... +...-+...+.+.+ +.++ + .-.+.+
T Consensus 81 ~g~---WdtlILavtaD-AY~~VL~ql~~~~L~~vk~iVLvSPtf-GS~~lv~~~l~~~~~~~EVISFStY~gdTr~~d~ 155 (429)
T PF10100_consen 81 EGE---WDTLILAVTAD-AYLDVLQQLPWEVLKRVKSIVLVSPTF-GSHLLVKGFLNDLGPDAEVISFSTYYGDTRWSDG 155 (429)
T ss_pred ccc---ccEEEEEechH-HHHHHHHhcCHHHHhhCCEEEEECccc-chHHHHHHHHHhcCCCceEEEeecccccceeccC
Confidence 444 69999999996 667788666432 33334455455443 23333444444443 2222 2 223333
Q ss_pred hhhh---hcCC--cccCC---CCHHHHHHHHHHHHHHhccc
Q 010702 137 EEGA---RHGP--SLMPG---GSFEAYNNIRDILQKVAAQV 169 (503)
Q Consensus 137 ~~~a---~~G~--~i~~g---g~~~a~~~v~~ll~~ig~~~ 169 (503)
.... ..|. .+.+| ++....+++..+|+.++.+.
T Consensus 156 ~~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~ 196 (429)
T PF10100_consen 156 EQPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQL 196 (429)
T ss_pred CCcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCeE
Confidence 2211 1111 33444 24456678888998888653
No 372
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=95.10 E-value=0.13 Score=52.64 Aligned_cols=40 Identities=13% Similarity=0.382 Sum_probs=33.6
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhC-CCcEEEEeCChhHHHHH
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEK-GFPISVYNRTTSKVDET 45 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l 45 (503)
||+|.|.|. |.+|+.++..|+++ |++|.+.+|+..+...+
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~ 42 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDL 42 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHh
Confidence 368999996 99999999999986 79999999987654444
No 373
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.10 E-value=0.17 Score=52.90 Aligned_cols=124 Identities=15% Similarity=0.180 Sum_probs=68.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc-cCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
..+|.|||+|..|+.++.+|+..|. +++++|++.-....+..+... ....+...+....+.+..+ .+++-+...+..
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~v~v~~~~~~ 213 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAAL-NPDVQVEAVQER 213 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHH-CCCCEEEEEecc
Confidence 3589999999999999999999998 699999884333222221100 0000000111112222211 144444444432
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
. ..+.+.++ +..-++|||++-.. ..-..+.+.+.+.++-|+.+.+.|
T Consensus 214 ~-~~~~~~~~---~~~~D~Vv~~~d~~-~~r~~ln~~~~~~~ip~i~~~~~g 260 (376)
T PRK08762 214 V-TSDNVEAL---LQDVDVVVDGADNF-PTRYLLNDACVKLGKPLVYGAVFR 260 (376)
T ss_pred C-ChHHHHHH---HhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEecc
Confidence 1 12223333 33558999987654 222335566777888888876654
No 374
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=95.09 E-value=0.13 Score=52.44 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=29.7
Q ss_pred EEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHH
Q 010702 9 IGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLD 47 (503)
Q Consensus 9 IgIIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~ 47 (503)
|||+|+|.+|+.+++.+.+. +.+|. +.|.+++....+..
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~ 41 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAK 41 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHH
Confidence 69999999999999998754 45654 56877776555554
No 375
>PRK07236 hypothetical protein; Provisional
Probab=95.07 E-value=0.03 Score=58.39 Aligned_cols=40 Identities=23% Similarity=0.317 Sum_probs=35.3
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 1 M~~~~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
|...+.++|.|||.|..|..+|..|+++|++|+++++.+.
T Consensus 1 ~~~~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 1 MTHMSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 4444557899999999999999999999999999998864
No 376
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=95.04 E-value=0.06 Score=52.53 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=35.2
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHH
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDET 45 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l 45 (503)
+++|.|+|. |.+|+.++..|+++|++|++..|++++....
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~ 57 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTS 57 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHh
Confidence 468999995 9999999999999999999999998876544
No 377
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.02 E-value=0.079 Score=52.70 Aligned_cols=74 Identities=15% Similarity=0.209 Sum_probs=56.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||- ..+|.++|..|.++|..|+++.... .++.+..++ +|+||.++.-+.-
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T---------------------~dl~~~~k~---ADIvIsAvGkp~~ 214 (282)
T PRK14180 159 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT---------------------TDLKSHTTK---ADILIVAVGKPNF 214 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC---------------------CCHHHHhhh---cCEEEEccCCcCc
Confidence 57999995 7899999999999999999986431 244555555 9999999987643
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+.. ..+++|.+|||.+...
T Consensus 215 i~~------~~vk~gavVIDvGin~ 233 (282)
T PRK14180 215 ITA------DMVKEGAVVIDVGINH 233 (282)
T ss_pred CCH------HHcCCCcEEEEecccc
Confidence 221 3478999999998653
No 378
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.01 E-value=0.082 Score=52.59 Aligned_cols=74 Identities=16% Similarity=0.215 Sum_probs=56.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||- ..+|.++|..|.++|..|+++.... .++++...+ +|+||.++.-+.-
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T---------------------~nl~~~~~~---ADIvIsAvGkp~~ 213 (282)
T PRK14166 158 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT---------------------KDLSLYTRQ---ADLIIVAAGCVNL 213 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEcCCCcCc
Confidence 57999995 7799999999999999999887432 245555666 9999999987643
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+. ...+++|.+|||.+...
T Consensus 214 i~------~~~vk~GavVIDvGin~ 232 (282)
T PRK14166 214 LR------SDMVKEGVIVVDVGINR 232 (282)
T ss_pred cC------HHHcCCCCEEEEecccc
Confidence 22 13478999999998654
No 379
>PRK08017 oxidoreductase; Provisional
Probab=95.00 E-value=0.17 Score=49.06 Aligned_cols=40 Identities=18% Similarity=0.315 Sum_probs=34.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETL 46 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 46 (503)
++|-|.|. |.+|..+++.|+++|++|.+.+|++++.+.+.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 43 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMN 43 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHH
Confidence 46889997 99999999999999999999999987765543
No 380
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=94.99 E-value=0.047 Score=56.11 Aligned_cols=89 Identities=15% Similarity=0.209 Sum_probs=55.6
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcE---EEEeCChhHHHHHHHhhcccCCCCeeee-CCHHHHHhccCCCcEEEEecCC
Q 010702 8 RIGLAG-LAVMGQNLALNVAEKGFPI---SVYNRTTSKVDETLDRAHREGQLPLTGH-YTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~G~~V---~v~dr~~~~~~~l~~~~~~~g~~~i~~~-~s~~e~~~~l~~~dvIil~vp~ 82 (503)
||+||| .|..|..|.+.|.+++|.+ .++.++...-+.+.-.+. .+... .+.+++ .. +|+||+|+|.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~-----~~~~~~~~~~~~-~~---~D~v~~a~g~ 71 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGK-----ELEVNEAKIESF-EG---IDIALFSAGG 71 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCe-----eEEEEeCChHHh-cC---CCEEEECCCH
Confidence 689999 6999999999999988864 344344332222211111 12221 123333 43 9999999998
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+ ...+....+. ..|..|||.|+.
T Consensus 72 ~-~s~~~a~~~~---~~G~~VID~ss~ 94 (339)
T TIGR01296 72 S-VSKEFAPKAA---KCGAIVIDNTSA 94 (339)
T ss_pred H-HHHHHHHHHH---HCCCEEEECCHH
Confidence 6 4455554443 467899999874
No 381
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.98 E-value=0.41 Score=50.92 Aligned_cols=114 Identities=12% Similarity=0.064 Sum_probs=67.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH--HHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEec--C
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK--VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV--K 81 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~--~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v--p 81 (503)
.++|.|||+|..|.+.+..|++.|++|+++|..+.. .+.+ +.+. .+.......+.+.. +|+||..- |
T Consensus 6 ~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l-~~g~-----~~~~~~~~~~~~~~---~d~vv~spgi~ 76 (438)
T PRK03806 6 GKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKL-PENV-----ERHTGSLNDEWLLA---ADLIVASPGIA 76 (438)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHH-hcCC-----EEEeCCCCHHHhcC---CCEEEECCCCC
Confidence 357999999999999999999999999999975432 2233 2221 12221222333443 78766543 2
Q ss_pred CC-hhHHHHHH---------HHHhcC-CCCCEEEecCCCChhhHHHHHHHHHhcCccE
Q 010702 82 AG-SPVDQTIA---------ALSEHM-SPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (503)
Q Consensus 82 ~~-~~v~~vl~---------~l~~~l-~~g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (503)
.+ ..+....+ ++...+ ....|-|..|++...++.-+...|...|..+
T Consensus 77 ~~~~~~~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~ 134 (438)
T PRK03806 77 LAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGWKV 134 (438)
T ss_pred CCCHHHHHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHHcCCCE
Confidence 22 22222221 333222 2234567777777777766777777766544
No 382
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=94.98 E-value=0.16 Score=48.56 Aligned_cols=84 Identities=15% Similarity=0.233 Sum_probs=54.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEE--EecCCC
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI--ILVKAG 83 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIi--l~vp~~ 83 (503)
++|-|.|. |.+|..++..|+++|++|.+.+|++++.+.+..... +. . +++.+ .=+.+.
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~--------------~~--~---~~~~~~~~D~~~~ 66 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELR--------------AA--G---GEARVLVFDVSDE 66 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHH--------------hc--C---CceEEEEccCCCH
Confidence 57889985 999999999999999999999999877655443210 00 0 22322 223334
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
..++++++++...+.+=+.||++...
T Consensus 67 ~~~~~~~~~~~~~~~~id~vi~~ag~ 92 (246)
T PRK05653 67 AAVRALIEAAVEAFGALDILVNNAGI 92 (246)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 45666666665544455677776543
No 383
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=94.95 E-value=0.077 Score=54.49 Aligned_cols=94 Identities=15% Similarity=0.219 Sum_probs=58.6
Q ss_pred CCcCCCCcEEEEcc-cHHHHHHHHHHHh-CCCc---EEEEeCC--hhHHHHHHHhhcccCCCCeeee-CCHHHHHhccCC
Q 010702 1 MEASALSRIGLAGL-AVMGQNLALNVAE-KGFP---ISVYNRT--TSKVDETLDRAHREGQLPLTGH-YTPRDFVLSIQR 72 (503)
Q Consensus 1 M~~~~~~~IgIIGl-G~mG~~lA~~L~~-~G~~---V~v~dr~--~~~~~~l~~~~~~~g~~~i~~~-~s~~e~~~~l~~ 72 (503)
|+... ++|||||+ |..|..|.+.|.+ ..++ +..+... ..+.-.+... .+... .+++++ .+
T Consensus 1 ~~~~~-~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~-------~l~v~~~~~~~~-~~--- 68 (347)
T PRK06728 1 MSEKG-YHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGR-------EIIIQEAKINSF-EG--- 68 (347)
T ss_pred CCCCC-CEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCc-------ceEEEeCCHHHh-cC---
Confidence 55433 58999996 9999999999995 5667 4444322 2221111110 12221 244444 44
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 73 PRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 73 ~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
.|++|+++|.+ ...++...+. ..|..|||.|+..
T Consensus 69 ~Divf~a~~~~-~s~~~~~~~~---~~G~~VID~Ss~f 102 (347)
T PRK06728 69 VDIAFFSAGGE-VSRQFVNQAV---SSGAIVIDNTSEY 102 (347)
T ss_pred CCEEEECCChH-HHHHHHHHHH---HCCCEEEECchhh
Confidence 89999999986 4555555443 4689999998754
No 384
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=94.94 E-value=0.11 Score=52.47 Aligned_cols=81 Identities=11% Similarity=0.286 Sum_probs=53.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
.||+|+|. |..|.-|.+.|..+.+ +-+.....+.. + . ..+.+++.++ +|++|+|+|++ .
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~-~el~~l~s~~~--~------------~-~~~~~~~~~~---~D~vFlalp~~-~ 61 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDD-IELLSIAPDRR--K------------D-AAERAKLLNA---ADVAILCLPDD-A 61 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCC-eEEEEEecccc--c------------C-cCCHhHhhcC---CCEEEECCCHH-H
Confidence 47999985 9999999999998853 33222221110 0 0 1244555555 89999999996 4
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
..+.+..+. ..|..|||.|+..
T Consensus 62 s~~~~~~~~---~~g~~VIDlSadf 83 (310)
T TIGR01851 62 AREAVSLVD---NPNTCIIDASTAY 83 (310)
T ss_pred HHHHHHHHH---hCCCEEEECChHH
Confidence 455555443 4688999999753
No 385
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.94 E-value=0.086 Score=52.52 Aligned_cols=74 Identities=12% Similarity=0.233 Sum_probs=56.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.||| ...+|.++|..|.++|..|++++... .++.+.+.+ +|+||.++....-
T Consensus 159 k~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t---------------------~~l~~~~~~---ADIvI~AvG~p~~ 214 (284)
T PRK14190 159 KHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT---------------------KNLAELTKQ---ADILIVAVGKPKL 214 (284)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc---------------------hhHHHHHHh---CCEEEEecCCCCc
Confidence 5799999 58899999999999999999986321 245566666 9999999977542
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+. ..++++|.+|||.+...
T Consensus 215 i~------~~~ik~gavVIDvGi~~ 233 (284)
T PRK14190 215 IT------ADMVKEGAVVIDVGVNR 233 (284)
T ss_pred CC------HHHcCCCCEEEEeeccc
Confidence 21 13468999999998654
No 386
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=94.93 E-value=0.25 Score=49.51 Aligned_cols=105 Identities=14% Similarity=0.186 Sum_probs=77.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcchhh
Q 010702 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPE 405 (503)
Q Consensus 326 ~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~~~~ 405 (503)
+.++.+|.++|.+....+..++|++.+.++ +++|.+++.++.+.+ ..+|.+++...+.+... +. ++.
T Consensus 163 g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~------~Gid~~~~~~~l~~~-~~~s~~~~~~~~~~~~~-~~-----~~~ 229 (291)
T TIGR01505 163 GDGQTCKVANQIIVALNIEAVSEALVFASK------AGVDPVRVRQALRGG-LAGSTVLEVKGERVIDR-TF-----KPG 229 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhcC-cccCHHHHhhChhhhcC-CC-----CCC
Confidence 678899999999999999999999999874 449999999999876 45777776543332221 11 111
Q ss_pred HhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhc
Q 010702 406 FAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYR 445 (503)
Q Consensus 406 ~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~ 445 (503)
|.- .-....++.+...|-+.|+|.|...++..+|....
T Consensus 230 f~~--~~~~KDl~~~~~~a~~~g~~~~~~~~~~~~~~~a~ 267 (291)
T TIGR01505 230 FRI--DLHQKDLNLALDSAKAVGANLPNTATVQELFNTLR 267 (291)
T ss_pred cch--HHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHH
Confidence 221 23345668888999999999999999998776543
No 387
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=94.93 E-value=0.12 Score=52.72 Aligned_cols=99 Identities=12% Similarity=0.065 Sum_probs=56.1
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCChhH--HHHHHHhhcc---cCCCCeeeeCCHHHHHhccCCCc
Q 010702 8 RIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRTTSK--VDETLDRAHR---EGQLPLTGHYTPRDFVLSIQRPR 74 (503)
Q Consensus 8 ~IgIIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~~~--~~~l~~~~~~---~g~~~i~~~~s~~e~~~~l~~~d 74 (503)
||+|||+ |.+|..+|..|+..|. ++.++|+++.. .+.....-.. .....+....+..+.+++ +|
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~---aD 77 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTD---VD 77 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCC---CC
Confidence 6999999 9999999999998654 59999996542 2111100000 000012222232333344 99
Q ss_pred EEEEecCC----Ch-----------hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 75 SVIILVKA----GS-----------PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 75 vIil~vp~----~~-----------~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+||++.-. +. .++++...+.++..+..+||-.||-
T Consensus 78 iVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNP 127 (324)
T TIGR01758 78 VAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNP 127 (324)
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCc
Confidence 99998632 11 1334445565654466677777753
No 388
>PRK14030 glutamate dehydrogenase; Provisional
Probab=94.93 E-value=0.19 Score=53.12 Aligned_cols=117 Identities=13% Similarity=0.107 Sum_probs=74.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEE--------Ee---CChhHHHHHHHhhcccCC--------C-CeeeeCCHHHH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISV--------YN---RTTSKVDETLDRAHREGQ--------L-PLTGHYTPRDF 66 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v--------~d---r~~~~~~~l~~~~~~~g~--------~-~i~~~~s~~e~ 66 (503)
.+|+|-|.|++|...|+.|.+.|.+|.. || .+.++++.+.+.....+. + +.+.. +.+++
T Consensus 229 ~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i-~~~~~ 307 (445)
T PRK14030 229 KTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF-AGKKP 307 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc-CCccc
Confidence 5899999999999999999999999888 88 777664434322111100 0 11111 23333
Q ss_pred HhccCCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 67 ~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
... +||+.+-|--.+.-..+.++.|... .=++|+...|. | .+.+..+.|.++|+.|+.
T Consensus 308 ~~~--~cDVliPcAl~n~I~~~na~~l~~~--~ak~V~EgAN~-p-~t~eA~~iL~~rGI~~vP 365 (445)
T PRK14030 308 WEQ--KVDIALPCATQNELNGEDADKLIKN--GVLCVAEVSNM-G-CTAEAIDKFIAAKQLFAP 365 (445)
T ss_pred eec--cccEEeeccccccCCHHHHHHHHHc--CCeEEEeCCCC-C-CCHHHHHHHHHCCCEEeC
Confidence 331 4898887765543333344444321 34688888888 4 555677888999998774
No 389
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.93 E-value=0.086 Score=52.70 Aligned_cols=74 Identities=16% Similarity=0.198 Sum_probs=57.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||- ..+|.++|..|.++|..|+++.... .++.+.+.+ +|+||.++.-..-
T Consensus 161 k~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T---------------------~~l~~~~~~---ADIvVsAvGkp~~ 216 (294)
T PRK14187 161 SDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT---------------------RDLADYCSK---ADILVAAVGIPNF 216 (294)
T ss_pred CEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEccCCcCc
Confidence 57999995 7899999999999999999987431 245666666 9999999987643
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+. ..++++|.+|||.+...
T Consensus 217 i~------~~~ik~gaiVIDVGin~ 235 (294)
T PRK14187 217 VK------YSWIKKGAIVIDVGINS 235 (294)
T ss_pred cC------HHHcCCCCEEEEecccc
Confidence 22 13477999999998654
No 390
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.92 E-value=0.31 Score=52.24 Aligned_cols=122 Identities=17% Similarity=0.141 Sum_probs=68.9
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEec--CC
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV--KA 82 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v--p~ 82 (503)
...+|+|+|+|.-|.+.++.|. .|.+|+++|.++.....+.+.... ......+ .+.... +|+||..- |.
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~-~g~~v~v~D~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~---~d~vV~SPgI~~ 75 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQ-NKYDVIVYDDLKANRDIFEELYSK----NAIAALS-DSRWQN---LDKIVLSPGIPL 75 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHh-CCCEEEEECCCCCchHHHHhhhcC----ceeccCC-hhHhhC---CCEEEECCCCCC
Confidence 3468999999999999999998 599999999664433222211000 1111112 233333 88887752 33
Q ss_pred Chh-HHHHH---------HHHH-hcCCC-CCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 83 GSP-VDQTI---------AALS-EHMSP-GDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 83 ~~~-v~~vl---------~~l~-~~l~~-g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
..+ +...- -+++ ..... ..|-|..|++...++.-+...++..|..+.-++-.|
T Consensus 76 ~~p~~~~a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~GniG 140 (454)
T PRK01368 76 THEIVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNIG 140 (454)
T ss_pred CCHHHHHHHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEEccCC
Confidence 222 22211 1222 22222 346666777777666667777777776554333333
No 391
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=94.91 E-value=0.29 Score=47.86 Aligned_cols=108 Identities=16% Similarity=0.184 Sum_probs=65.5
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCC-Cc-EEEEeCChhHH-----HHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEE
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEKG-FP-ISVYNRTTSKV-----DETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI 77 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~G-~~-V~v~dr~~~~~-----~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIi 77 (503)
++||+|+|+ |.||+.+.+.+.+.. ++ +..++|.+... .++...+ .+++...+++.....+ +|++|
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~----~~gv~v~~~~~~~~~~---~DV~I 74 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLG----LLGVPVTDDLLLVKAD---ADVLI 74 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhcccc----ccCceeecchhhcccC---CCEEE
Confidence 579999998 999999999998776 45 44678876532 1221111 1234455555544444 89988
Q ss_pred EecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc
Q 010702 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124 (503)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~ 124 (503)
=-..+ ..+.+.++-.+ ..+..+|-.+|+......+..+.+.++
T Consensus 75 DFT~P-~~~~~~l~~~~---~~~~~lVIGTTGf~~e~~~~l~~~a~~ 117 (266)
T COG0289 75 DFTTP-EATLENLEFAL---EHGKPLVIGTTGFTEEQLEKLREAAEK 117 (266)
T ss_pred ECCCc-hhhHHHHHHHH---HcCCCeEEECCCCCHHHHHHHHHHHhh
Confidence 76544 34454444333 345556667777666555555555544
No 392
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.89 E-value=0.26 Score=50.97 Aligned_cols=124 Identities=14% Similarity=0.222 Sum_probs=69.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc-cCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
..+|.|||+|-+|+.++.+|+..|. +++++|.+.=....+..+-.. ....+-..+....+-+..+ .+++-+.+.+..
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~-np~v~v~~~~~~ 106 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLAL-NPDVKVTVSVRR 106 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHH-CCCcEEEEEEee
Confidence 3589999999999999999999997 688999886333333221100 0000000011112222221 266666666543
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
-. .+-.. ..+..-++|||++-.. ..-..+...+.+.++-|+.+.+.|
T Consensus 107 i~-~~~~~---~~~~~~DvVvd~~d~~-~~r~~~n~~c~~~~ip~v~~~~~g 153 (355)
T PRK05597 107 LT-WSNAL---DELRDADVILDGSDNF-DTRHLASWAAARLGIPHVWASILG 153 (355)
T ss_pred cC-HHHHH---HHHhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEEec
Confidence 21 11122 2234568999998653 222334556677788888776554
No 393
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=94.88 E-value=0.031 Score=58.77 Aligned_cols=33 Identities=27% Similarity=0.634 Sum_probs=31.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 39 (503)
.+|.|||.|.+|.+.|..|++.|++|+++|+.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 489999999999999999999999999999875
No 394
>PRK05993 short chain dehydrogenase; Provisional
Probab=94.87 E-value=0.18 Score=49.95 Aligned_cols=41 Identities=17% Similarity=0.181 Sum_probs=35.1
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETL 46 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 46 (503)
+++|-|.|. |.+|..+|+.|++.|++|.+.+|+++..+++.
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~ 45 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALE 45 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 346778886 99999999999999999999999988766554
No 395
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=94.86 E-value=0.19 Score=48.90 Aligned_cols=86 Identities=17% Similarity=0.254 Sum_probs=55.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|-|.| .|.+|..+|+.|++.|++|.+.+|++++.+++.+... +. . .+...+..=+.+...
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~--------------~~--~-~~~~~~~~D~~~~~~ 73 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLK--------------GQ--G-LSAHALAFDVTDHDA 73 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH--------------hc--C-ceEEEEEccCCCHHH
Confidence 4688887 4999999999999999999999999877655443210 00 0 001222222344455
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
++.+++++...+.+=++||++...
T Consensus 74 ~~~~~~~~~~~~~~~d~li~~ag~ 97 (255)
T PRK07523 74 VRAAIDAFEAEIGPIDILVNNAGM 97 (255)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 666666666555555677776543
No 396
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=94.86 E-value=0.19 Score=49.13 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=29.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-----------CcEEEEeCCh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKG-----------FPISVYNRTT 39 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G-----------~~V~v~dr~~ 39 (503)
..+|.|||+|-.|+.++.+|++.| .+++++|.+.
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 468999999999999999999874 2889998765
No 397
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=94.86 E-value=0.22 Score=52.91 Aligned_cols=74 Identities=9% Similarity=0.179 Sum_probs=50.0
Q ss_pred CcEEEEcccHH-HHHHHHHHHhC-----CCcEEEEeCChhHHHHHHH---hhcc-cC-CCCeeeeCCHHHHHhccCCCcE
Q 010702 7 SRIGLAGLAVM-GQNLALNVAEK-----GFPISVYNRTTSKVDETLD---RAHR-EG-QLPLTGHYTPRDFVLSIQRPRS 75 (503)
Q Consensus 7 ~~IgIIGlG~m-G~~lA~~L~~~-----G~~V~v~dr~~~~~~~l~~---~~~~-~g-~~~i~~~~s~~e~~~~l~~~dv 75 (503)
|||+|||.|.. +..+...|+.. +-+|+++|.++++.+.... +... .| .+++..+.+.++++.. +|+
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~g---ADf 77 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTD---ADF 77 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCC---CCE
Confidence 68999999885 12244455433 3579999999987654322 1110 01 2357888899999887 999
Q ss_pred EEEecCCC
Q 010702 76 VIILVKAG 83 (503)
Q Consensus 76 Iil~vp~~ 83 (503)
||..+..+
T Consensus 78 Vi~~irvG 85 (437)
T cd05298 78 VFAQIRVG 85 (437)
T ss_pred EEEEeeeC
Confidence 99998654
No 398
>PRK12828 short chain dehydrogenase; Provisional
Probab=94.86 E-value=0.26 Score=46.96 Aligned_cols=84 Identities=13% Similarity=0.200 Sum_probs=56.5
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|-|.| .|.+|..+++.|+++|++|.+.+|++++..+..+... . .. .+++..-+.+...
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~--------------~--~~---~~~~~~D~~~~~~ 68 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVP--------------A--DA---LRIGGIDLVDPQA 68 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHh--------------h--cC---ceEEEeecCCHHH
Confidence 4688887 4999999999999999999999999876554432210 0 01 3344444555556
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
++.+++++.....+-+.|++....
T Consensus 69 ~~~~~~~~~~~~~~~d~vi~~ag~ 92 (239)
T PRK12828 69 ARRAVDEVNRQFGRLDALVNIAGA 92 (239)
T ss_pred HHHHHHHHHHHhCCcCEEEECCcc
Confidence 677777666555455777776543
No 399
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=94.84 E-value=0.096 Score=52.52 Aligned_cols=74 Identities=18% Similarity=0.302 Sum_probs=57.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||- ..+|.+||..|.++|..|+++... +.++++.+.+ +|+||.++.-..-
T Consensus 168 k~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~---------------------T~nl~~~~~~---ADIvv~AvGk~~~ 223 (299)
T PLN02516 168 KKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR---------------------TPDPESIVRE---ADIVIAAAGQAMM 223 (299)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEcCCCcCc
Confidence 57999995 778999999999999999999642 1356666666 9999999976432
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+. ..++++|.+|||.+...
T Consensus 224 i~------~~~vk~gavVIDvGin~ 242 (299)
T PLN02516 224 IK------GDWIKPGAAVIDVGTNA 242 (299)
T ss_pred cC------HHHcCCCCEEEEeeccc
Confidence 21 13578999999998654
No 400
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=94.80 E-value=0.24 Score=49.66 Aligned_cols=108 Identities=16% Similarity=0.069 Sum_probs=75.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCC-CCCcc-
Q 010702 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNL-ASLVV- 402 (503)
Q Consensus 325 ~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~-~~ll~- 402 (503)
.+.++.+|+++|.+.++.++.++|++.+.++ .++|...+.++.+.+. -+|+.++.... .+.. ...+.
T Consensus 159 ~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~------~Gld~~~~~~~~~~~~-~~s~~~~~~~~----~~~~~~~~~~~ 227 (288)
T TIGR01692 159 HGAGQAAKICNNMLLGISMIGTAEAMALGEK------LGLDPKVLFEIANTSS-GRCWSSDTYNP----VPGVMPQAPAS 227 (288)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhcCC-ccCcHHHHhCC----Ccccccccccc
Confidence 3788999999999999999999999999874 3399999999998763 35655442211 0000 00000
Q ss_pred ---hhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhc
Q 010702 403 ---DPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYR 445 (503)
Q Consensus 403 ---~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~ 445 (503)
++.| .+.-...+++.+...|-+.|+|+|....+...|....
T Consensus 228 ~~~~~~f--~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~ 271 (288)
T TIGR01692 228 NGYQGGF--GTALMLKDLGLAQDAAKSAGAPTPLGALARQLYSLFD 271 (288)
T ss_pred CCCCCCc--chHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 1122 2224456778999999999999999999988776443
No 401
>PRK06180 short chain dehydrogenase; Provisional
Probab=94.80 E-value=0.2 Score=49.51 Aligned_cols=83 Identities=13% Similarity=0.143 Sum_probs=55.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|-|.|. |.+|..+++.|+++|++|.+.+|++++.+.+.+... .. ...+..-+.+...
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~-----------------~~---~~~~~~D~~d~~~ 64 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHP-----------------DR---ALARLLDVTDFDA 64 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcC-----------------CC---eeEEEccCCCHHH
Confidence 46888874 999999999999999999999999887665543210 00 1223333444445
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+...++++.....+=++||++...
T Consensus 65 ~~~~~~~~~~~~~~~d~vv~~ag~ 88 (277)
T PRK06180 65 IDAVVADAEATFGPIDVLVNNAGY 88 (277)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCc
Confidence 666666665544444677777554
No 402
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.76 E-value=0.3 Score=56.23 Aligned_cols=110 Identities=10% Similarity=0.054 Sum_probs=67.6
Q ss_pred CcEEEEcccHHHHHH-HHHHHhCCCcEEEEeCChh-HHHHHHHhhcccCCCCeeee-CCHHHHHhccCCCcEEEEe--cC
Q 010702 7 SRIGLAGLAVMGQNL-ALNVAEKGFPISVYNRTTS-KVDETLDRAHREGQLPLTGH-YTPRDFVLSIQRPRSVIIL--VK 81 (503)
Q Consensus 7 ~~IgIIGlG~mG~~l-A~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~i~~~-~s~~e~~~~l~~~dvIil~--vp 81 (503)
++|.|||+|..|.+. |+.|.+.|++|+++|.++. ..+++.+.+ +... ....+.+.. +|+||.+ +|
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~g-------i~~~~g~~~~~~~~---~d~vV~SpgI~ 74 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKG-------ARFFLGHQEEHVPE---DAVVVYSSSIS 74 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCC-------CEEeCCCCHHHcCC---CCEEEECCCcC
Confidence 469999999999886 9999999999999997643 344444433 2222 122233333 8988875 33
Q ss_pred CC-hhHHHHH---------HHHHhcCCC--CCEEEecCCCChhhHHHHHHHHHhcCc
Q 010702 82 AG-SPVDQTI---------AALSEHMSP--GDCIIDGGNEWYLNTERRIHEASQKGL 126 (503)
Q Consensus 82 ~~-~~v~~vl---------~~l~~~l~~--g~iIId~st~~~~~t~~~~~~l~~~gi 126 (503)
.+ ..+.... -+++..+.+ ..|-|..|++...++.-+...|+..|.
T Consensus 75 ~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~ 131 (809)
T PRK14573 75 KDNVEYLSAKSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAKK 131 (809)
T ss_pred CCCHHHHHHHHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 32 2222221 123222222 356777778877777667777777664
No 403
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=94.76 E-value=0.57 Score=51.21 Aligned_cols=74 Identities=16% Similarity=0.259 Sum_probs=49.5
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcc-----cC-----CCCeee--eCCHHHHHhccCCCc
Q 010702 8 RIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR-----EG-----QLPLTG--HYTPRDFVLSIQRPR 74 (503)
Q Consensus 8 ~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~-----~g-----~~~i~~--~~s~~e~~~~l~~~d 74 (503)
.|.|.|. |.+|..+++.|++.|++|.+++|+.++.+.+.+.... .| ...+.. ..+.+++.+.+..+|
T Consensus 82 vVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aLggiD 161 (576)
T PLN03209 82 LAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPALGNAS 161 (576)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHhcCCC
Confidence 4778875 9999999999999999999999999887665432100 00 000111 124445545556689
Q ss_pred EEEEecC
Q 010702 75 SVIILVK 81 (503)
Q Consensus 75 vIil~vp 81 (503)
+||.++.
T Consensus 162 iVVn~AG 168 (576)
T PLN03209 162 VVICCIG 168 (576)
T ss_pred EEEEccc
Confidence 9998864
No 404
>PRK07074 short chain dehydrogenase; Provisional
Probab=94.74 E-value=0.26 Score=47.93 Aligned_cols=84 Identities=13% Similarity=0.132 Sum_probs=54.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|-|+|. |.+|..++..|+++|++|.+.+|++++.+.+.+.... .. ..++-.-+.+...
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~----------------~~---~~~~~~D~~~~~~ 63 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALGD----------------AR---FVPVACDLTDAAS 63 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC----------------Cc---eEEEEecCCCHHH
Confidence 46888885 8999999999999999999999998877665542100 00 2233333444445
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+...++++.....+=++||++...
T Consensus 64 ~~~~~~~~~~~~~~~d~vi~~ag~ 87 (257)
T PRK07074 64 LAAALANAAAERGPVDVLVANAGA 87 (257)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 555566555544444677776653
No 405
>PRK06182 short chain dehydrogenase; Validated
Probab=94.72 E-value=0.25 Score=48.59 Aligned_cols=80 Identities=11% Similarity=0.200 Sum_probs=54.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|-|.|. |.+|..++..|++.|++|.+.+|++++.+++...+ ..++..-+.+...
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~-----------------------~~~~~~Dv~~~~~ 60 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASLG-----------------------VHPLSLDVTDEAS 60 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCC-----------------------CeEEEeeCCCHHH
Confidence 46888885 99999999999999999999999987765443211 2233334445456
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
++.+++++.....+=+++|++...
T Consensus 61 ~~~~~~~~~~~~~~id~li~~ag~ 84 (273)
T PRK06182 61 IKAAVDTIIAEEGRIDVLVNNAGY 84 (273)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCc
Confidence 666666665544444677776543
No 406
>PRK07024 short chain dehydrogenase; Provisional
Probab=94.71 E-value=0.15 Score=49.65 Aligned_cols=86 Identities=16% Similarity=0.161 Sum_probs=57.3
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 6 LSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 6 ~~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
+++|-|.| .|.+|..++..|+++|++|.+.+|++++.+++.+.. .. . . . ..++-+=+.+..
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~--------~~-~---~---~---~~~~~~Dl~~~~ 63 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARL--------PK-A---A---R---VSVYAADVRDAD 63 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc--------cc-C---C---e---eEEEEcCCCCHH
Confidence 35787887 699999999999999999999999988766554321 00 0 0 1 233333344445
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
.+++.++++.....+-+++|++...
T Consensus 64 ~i~~~~~~~~~~~g~id~lv~~ag~ 88 (257)
T PRK07024 64 ALAAAAADFIAAHGLPDVVIANAGI 88 (257)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCc
Confidence 6667777766555445788877653
No 407
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=94.71 E-value=0.25 Score=48.02 Aligned_cols=82 Identities=15% Similarity=0.158 Sum_probs=53.8
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|-|.| .|.+|..+|+.|+++|++|.+.+|+.+..+++.+... .. ...+..-+.+...
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~~ 66 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIG-----------------PA---AIAVSLDVTRQDS 66 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhC-----------------Cc---eEEEEccCCCHHH
Confidence 4577887 5999999999999999999999999887665543210 00 1122222334445
Q ss_pred HHHHHHHHHhcCCCCCEEEecCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st 108 (503)
++.+++.+...+.+=+++|++..
T Consensus 67 ~~~~~~~~~~~~~~id~li~~ag 89 (257)
T PRK07067 67 IDRIVAAAVERFGGIDILFNNAA 89 (257)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 66666666655555567777654
No 408
>PRK08163 salicylate hydroxylase; Provisional
Probab=94.70 E-value=0.039 Score=57.61 Aligned_cols=35 Identities=17% Similarity=0.361 Sum_probs=32.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
.++|.|||.|..|..+|..|+++|++|++++|++.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 35899999999999999999999999999999864
No 409
>PLN00016 RNA-binding protein; Provisional
Probab=94.70 E-value=0.14 Score=53.30 Aligned_cols=37 Identities=19% Similarity=0.396 Sum_probs=33.2
Q ss_pred CCCcEEEE----c-ccHHHHHHHHHHHhCCCcEEEEeCChhH
Q 010702 5 ALSRIGLA----G-LAVMGQNLALNVAEKGFPISVYNRTTSK 41 (503)
Q Consensus 5 ~~~~IgII----G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~ 41 (503)
++++|.|+ | .|.+|..++..|+++||+|++.+|++..
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~ 92 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP 92 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence 45689999 6 5999999999999999999999998765
No 410
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.69 E-value=0.1 Score=52.06 Aligned_cols=74 Identities=12% Similarity=0.234 Sum_probs=56.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+++.|||- ..+|.++|..|.++|..|+++... +.++.+...+ +|+||.++.-..-
T Consensus 160 K~vvViGrS~iVGkPla~lL~~~~ATVtichs~---------------------T~~L~~~~~~---ADIvV~AvGkp~~ 215 (288)
T PRK14171 160 KNVVIIGRSNIVGKPLSALLLKENCSVTICHSK---------------------THNLSSITSK---ADIVVAAIGSPLK 215 (288)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEccCCCCc
Confidence 57999995 789999999999999999998632 1245666666 9999999976542
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+. ...+++|.+|||.+...
T Consensus 216 i~------~~~vk~GavVIDvGin~ 234 (288)
T PRK14171 216 LT------AEYFNPESIVIDVGINR 234 (288)
T ss_pred cC------HHHcCCCCEEEEeeccc
Confidence 22 13478999999998653
No 411
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=94.69 E-value=0.17 Score=48.69 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=36.1
Q ss_pred cCCCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH
Q 010702 3 ASALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETL 46 (503)
Q Consensus 3 ~~~~~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 46 (503)
..+.++|.|.| .|.+|..+++.|+++|++|.+.+|++++...+.
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~ 47 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATA 47 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 33345788888 699999999999999999999999987655443
No 412
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=94.69 E-value=0.25 Score=49.80 Aligned_cols=104 Identities=12% Similarity=0.071 Sum_probs=75.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHH-HH-HHHhcCCCCCCCcc
Q 010702 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDR-IK-KAYQRNPNLASLVV 402 (503)
Q Consensus 325 ~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~-i~-~~~~~~~~~~~ll~ 402 (503)
.++++-+|.+.|-+..+.+..++|++.+.++. ++|...+.++.+.+. ..+..+.. .. .++..+.
T Consensus 164 ~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~------Gld~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~------- 229 (296)
T PRK15461 164 PGMGIRVKLINNYMSIALNALSAEAAVLCEAL------GLSFDVALKVMSGTA-AGKGHFTTTWPNKVLKGDL------- 229 (296)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhcCc-ccChHHHccccchhccCCC-------
Confidence 37889999999999999999999999998853 399999999988762 33433322 21 1221111
Q ss_pred hhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 010702 403 DPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTY 444 (503)
Q Consensus 403 ~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~ 444 (503)
++.| .++-...+++-+...|-+.|+|.|....+...|..-
T Consensus 230 ~~~f--~~~~~~KD~~l~~~~a~~~g~~~p~~~~~~~~~~~a 269 (296)
T PRK15461 230 SPAF--MIDLAHKDLGIALDVANQLHVPMPLGAASREVYSQA 269 (296)
T ss_pred CCCc--chHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 1233 334456677899999999999999999998876543
No 413
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=94.68 E-value=0.27 Score=47.16 Aligned_cols=89 Identities=9% Similarity=0.053 Sum_probs=58.3
Q ss_pred CCcCCCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 1 MEASALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 1 M~~~~~~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
|.+...+++-|.| .|.+|..++..|+++|+.|.+.+|++++.+.+..... .. ..++-.=
T Consensus 1 ~~~~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~-----------------~~---~~~~~~D 60 (245)
T PRK12936 1 MFDLSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAELG-----------------ER---VKIFPAN 60 (245)
T ss_pred CcCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhC-----------------Cc---eEEEEcc
Confidence 4433345788887 6999999999999999999999998877665543210 01 2222222
Q ss_pred cCCChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+.+...++.+++++.+.+.+=+.||++...
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 90 (245)
T PRK12936 61 LSDRDEVKALGQKAEADLEGVDILVNNAGI 90 (245)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 344456666667766655555778877654
No 414
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.67 E-value=0.44 Score=51.26 Aligned_cols=112 Identities=15% Similarity=0.057 Sum_probs=66.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh-H---HHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEec-
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS-K---VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV- 80 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~---~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v- 80 (503)
.++|+|+|+|.-|.+.|+.|.+.|.+|+++|.++. . ..++.+.+. .+....+ .+.+.. +|+||.+-
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~-----~~~~~~~-~~~~~~---~d~vV~Spg 78 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAAL-----LVETEAS-AQRLAA---FDVVVKSPG 78 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCE-----EEeCCCC-hHHccC---CCEEEECCC
Confidence 35799999999999999999999999999995432 1 123322110 0111223 333444 89988763
Q ss_pred -CCChh-HHHHH---------HHH-Hhc-CC-----CCCEEEecCCCChhhHHHHHHHHHhcCc
Q 010702 81 -KAGSP-VDQTI---------AAL-SEH-MS-----PGDCIIDGGNEWYLNTERRIHEASQKGL 126 (503)
Q Consensus 81 -p~~~~-v~~vl---------~~l-~~~-l~-----~g~iIId~st~~~~~t~~~~~~l~~~gi 126 (503)
|...+ ++... -++ ... .. ...|-|..|++...++.-+...|...|.
T Consensus 79 I~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~ 142 (468)
T PRK04690 79 ISPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAGH 142 (468)
T ss_pred CCCCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcCC
Confidence 43322 22221 122 111 21 2356677777777667667777776663
No 415
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.67 E-value=0.11 Score=51.61 Aligned_cols=74 Identities=15% Similarity=0.213 Sum_probs=56.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||- ..+|.++|..|.++|..|+++... +.++++..++ +|+||.++.-..-
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~~AtVtichs~---------------------T~nl~~~~~~---ADIvI~AvGk~~~ 213 (282)
T PRK14182 158 KRALVVGRSNIVGKPMAMMLLERHATVTIAHSR---------------------TADLAGEVGR---ADILVAAIGKAEL 213 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEecCCcCc
Confidence 57999994 789999999999999999998532 1245566666 9999999976532
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+. ..++++|.+|||.+...
T Consensus 214 i~------~~~ik~gaiVIDvGin~ 232 (282)
T PRK14182 214 VK------GAWVKEGAVVIDVGMNR 232 (282)
T ss_pred cC------HHHcCCCCEEEEeecee
Confidence 22 13478999999998654
No 416
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.66 E-value=0.12 Score=51.57 Aligned_cols=74 Identities=11% Similarity=0.236 Sum_probs=56.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHh--CCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 7 SRIGLAGL-AVMGQNLALNVAE--KGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~--~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
+++.|||- ..+|.+||..|.+ ++..|+++... +.++++.+++ +|+||.++.-+
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~---------------------T~~l~~~~k~---ADIvV~AvGkp 214 (284)
T PRK14193 159 AHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG---------------------TRDLAAHTRR---ADIIVAAAGVA 214 (284)
T ss_pred CEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC---------------------CCCHHHHHHh---CCEEEEecCCc
Confidence 57999995 7899999999998 68899988643 1355666666 99999999775
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
.-+. ..++++|.+|||.+...
T Consensus 215 ~~i~------~~~ik~GavVIDvGin~ 235 (284)
T PRK14193 215 HLVT------ADMVKPGAAVLDVGVSR 235 (284)
T ss_pred CccC------HHHcCCCCEEEEccccc
Confidence 4222 13578999999998764
No 417
>PRK14852 hypothetical protein; Provisional
Probab=94.65 E-value=0.12 Score=59.39 Aligned_cols=125 Identities=20% Similarity=0.202 Sum_probs=73.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc-ccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-REGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~-~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
..+|+|||+|-+|+.++.+|+..|. ++++.|-+.=....+..+.. ....++-..+....+.+.++ .+++=|.+.+..
T Consensus 332 ~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~I-NP~v~I~~~~~~ 410 (989)
T PRK14852 332 RSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSV-NPFLDIRSFPEG 410 (989)
T ss_pred cCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHH-CCCCeEEEEecC
Confidence 3589999999999999999999997 68888876543333332210 00000001111223333322 266667776654
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhhH-HHHHHHHHhcCccEecccCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNT-ERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t-~~~~~~l~~~gi~~i~~pvsg 135 (503)
..++.+++++. .=++|||+......+. ..+.+.+.+.++-++.+++.|
T Consensus 411 -I~~en~~~fl~---~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G 459 (989)
T PRK14852 411 -VAAETIDAFLK---DVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLG 459 (989)
T ss_pred -CCHHHHHHHhh---CCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccc
Confidence 23334444443 4589999887643333 345556677788888876654
No 418
>PRK07877 hypothetical protein; Provisional
Probab=94.64 E-value=0.11 Score=58.31 Aligned_cols=124 Identities=15% Similarity=0.176 Sum_probs=71.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
..+|+|||+| +|+.+|..|+..|. +++++|.+.=....+.........++...+...++.+..+ .+++-|.+++..
T Consensus 107 ~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~i-np~i~v~~~~~~ 184 (722)
T PRK07877 107 RLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAEL-DPYLPVEVFTDG 184 (722)
T ss_pred cCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHH-CCCCEEEEEecc
Confidence 3589999999 89999999999994 7899987753322222211000000000111122222222 266777777664
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg 136 (503)
- ..+.+++++. .-|+|||++-.. ..-..+.+.+.++++-++.+...+|
T Consensus 185 i-~~~n~~~~l~---~~DlVvD~~D~~-~~R~~ln~~a~~~~iP~i~~~~~~g 232 (722)
T PRK07877 185 L-TEDNVDAFLD---GLDVVVEECDSL-DVKVLLREAARARRIPVLMATSDRG 232 (722)
T ss_pred C-CHHHHHHHhc---CCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 2 2344555543 458999998764 3333445566777887776654444
No 419
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=94.62 E-value=0.31 Score=47.68 Aligned_cols=83 Identities=14% Similarity=0.137 Sum_probs=55.2
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+++-|.| .|.+|..+|+.|+++|++|.+.+|++++.+.+.+... .. ..++..-+.+...
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~~ 66 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFG-----------------DH---VLVVEGDVTSYAD 66 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----------------Cc---ceEEEccCCCHHH
Confidence 4566777 4889999999999999999999999887766543210 00 2223333344445
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
++.+++++.....+=+++|++...
T Consensus 67 ~~~~~~~~~~~~g~id~li~~ag~ 90 (263)
T PRK06200 67 NQRAVDQTVDAFGKLDCFVGNAGI 90 (263)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 666776666555455778877653
No 420
>PRK14851 hypothetical protein; Provisional
Probab=94.61 E-value=0.13 Score=57.64 Aligned_cols=125 Identities=16% Similarity=0.209 Sum_probs=71.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc-ccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-REGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~-~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
..+|+|||+|-+|+.++.+|+..|. +++++|.+.=....+..+.. ....++-..+.-..+.+.++. +++-|.+.+..
T Consensus 43 ~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~in-P~~~I~~~~~~ 121 (679)
T PRK14851 43 EAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSIN-PFLEITPFPAG 121 (679)
T ss_pred cCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhC-CCCeEEEEecC
Confidence 3589999999999999999999997 67888876533333322110 000000000111222222221 56666666654
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhhH-HHHHHHHHhcCccEecccCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNT-ERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t-~~~~~~l~~~gi~~i~~pvsg 135 (503)
- ..+-++.+ +..-++|||+.......+ ..+.+.+...++-++.+++.|
T Consensus 122 i-~~~n~~~~---l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G 170 (679)
T PRK14851 122 I-NADNMDAF---LDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLG 170 (679)
T ss_pred C-ChHHHHHH---HhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeccc
Confidence 2 22233344 334589999987543233 345566777888888776554
No 421
>PRK05693 short chain dehydrogenase; Provisional
Probab=94.61 E-value=0.27 Score=48.41 Aligned_cols=80 Identities=16% Similarity=0.222 Sum_probs=53.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+++-|.| .|.+|..+++.|++.|++|.+.+|+++..+.+...+ .+.+..=+.+...
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~-----------------------~~~~~~Dl~~~~~ 58 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAAG-----------------------FTAVQLDVNDGAA 58 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCC-----------------------CeEEEeeCCCHHH
Confidence 4577777 499999999999999999999999987655443211 2223233444456
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
++++++.+.+...+=++||++...
T Consensus 59 ~~~~~~~~~~~~~~id~vi~~ag~ 82 (274)
T PRK05693 59 LARLAEELEAEHGGLDVLINNAGY 82 (274)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 666776665544444778877653
No 422
>PRK08309 short chain dehydrogenase; Provisional
Probab=94.58 E-value=0.43 Score=44.31 Aligned_cols=101 Identities=17% Similarity=0.083 Sum_probs=58.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
|++.|+|..-||..++..|++.|++|.+.+|++++.+.+..... . ... ...+-.-+.+...+
T Consensus 1 m~vlVtGGtG~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~~l~-----------~----~~~---i~~~~~Dv~d~~sv 62 (177)
T PRK08309 1 MHALVIGGTGMLKRVSLWLCEKGFHVSVIARREVKLENVKREST-----------T----PES---ITPLPLDYHDDDAL 62 (177)
T ss_pred CEEEEECcCHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHhh-----------c----CCc---EEEEEccCCCHHHH
Confidence 46888887668888999999999999999999887665543210 0 001 12222234444556
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
+.++++.+....+-++++..-- ..-...+...+++.|+.
T Consensus 63 ~~~i~~~l~~~g~id~lv~~vh--~~~~~~~~~~~~~~gv~ 101 (177)
T PRK08309 63 KLAIKSTIEKNGPFDLAVAWIH--SSAKDALSVVCRELDGS 101 (177)
T ss_pred HHHHHHHHHHcCCCeEEEEecc--ccchhhHHHHHHHHccC
Confidence 6666655544333345554322 22344455555555544
No 423
>PRK06153 hypothetical protein; Provisional
Probab=94.55 E-value=0.25 Score=51.25 Aligned_cols=33 Identities=24% Similarity=0.361 Sum_probs=29.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTT 39 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~ 39 (503)
.+|+|||+|-.|+.++..|++.|. +++++|.+.
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~ 210 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDD 210 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCE
Confidence 589999999999999999999997 688998774
No 424
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.55 E-value=0.23 Score=47.52 Aligned_cols=91 Identities=18% Similarity=0.231 Sum_probs=53.6
Q ss_pred CCcCCCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChh-HHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEE
Q 010702 1 MEASALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTS-KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (503)
Q Consensus 1 M~~~~~~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil 78 (503)
|.+.++++|-|+| .|.+|..++..|+++|++|.+..|+.. ..+.+.... .+.-.. ..++..
T Consensus 1 ~~~~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~--------------~~~~~~---~~~~~~ 63 (249)
T PRK12825 1 MGSLMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAV--------------EALGRR---AQAVQA 63 (249)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHH--------------HhcCCc---eEEEEC
Confidence 5554556899997 599999999999999999887555443 333222211 000001 223333
Q ss_pred ecCCChhHHHHHHHHHhcCCCCCEEEecCC
Q 010702 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st 108 (503)
-+.+...++++++++...+.+=+.||++..
T Consensus 64 D~~~~~~v~~~~~~~~~~~~~id~vi~~ag 93 (249)
T PRK12825 64 DVTDKAALEAAVAAAVERFGRIDILVNNAG 93 (249)
T ss_pred CcCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence 334444566666666554444467777654
No 425
>PRK06482 short chain dehydrogenase; Provisional
Probab=94.53 E-value=0.28 Score=48.38 Aligned_cols=83 Identities=11% Similarity=0.116 Sum_probs=55.4
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|-|.| .|.+|..++..|++.|++|.+.+|+++..+.+.+... .. ..++-.-+.+...
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~~ 62 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYG-----------------DR---LWVLQLDVTDSAA 62 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc-----------------Cc---eEEEEccCCCHHH
Confidence 4688887 5999999999999999999999999887666543210 01 2233333444445
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
++.++.++.+...+=++||+++..
T Consensus 63 ~~~~~~~~~~~~~~id~vi~~ag~ 86 (276)
T PRK06482 63 VRAVVDRAFAALGRIDVVVSNAGY 86 (276)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 666666655544444777777653
No 426
>PRK06500 short chain dehydrogenase; Provisional
Probab=94.52 E-value=0.32 Score=46.85 Aligned_cols=40 Identities=13% Similarity=0.204 Sum_probs=34.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETL 46 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 46 (503)
++|-|.|. |.+|..+++.|++.|++|.+.+|+++..+++.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 47 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAAR 47 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHH
Confidence 56888875 99999999999999999999999977655544
No 427
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=94.52 E-value=0.3 Score=47.68 Aligned_cols=84 Identities=12% Similarity=0.164 Sum_probs=55.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
|+|-|.|. |.+|..+|+.|++.|++|.+.+|++++.++..+... +. .. ...+..=+.+...
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~--------------~~-~~---~~~~~~Dv~d~~~ 62 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELK--------------EY-GE---VYAVKADLSDKDD 62 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH--------------hc-CC---ceEEEcCCCCHHH
Confidence 47888875 889999999999999999999999887665543210 00 00 1222223444456
Q ss_pred HHHHHHHHHhcCCCCCEEEecCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st 108 (503)
++++++++...+.+=+++|++..
T Consensus 63 ~~~~~~~~~~~~g~id~li~naG 85 (259)
T PRK08340 63 LKNLVKEAWELLGGIDALVWNAG 85 (259)
T ss_pred HHHHHHHHHHhcCCCCEEEECCC
Confidence 77777776665555577777654
No 428
>PRK06194 hypothetical protein; Provisional
Probab=94.47 E-value=0.3 Score=48.37 Aligned_cols=90 Identities=13% Similarity=0.123 Sum_probs=57.1
Q ss_pred CCcCCCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 1 MEASALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 1 M~~~~~~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
|.+..+++|-|.| .|.+|..+++.|+++|++|.+.+|+.+..++..+.... .. .++.++.
T Consensus 1 m~~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----------------~~---~~~~~~~ 61 (287)
T PRK06194 1 MKDFAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRA----------------QG---AEVLGVR 61 (287)
T ss_pred CcCCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHh----------------cC---CeEEEEE
Confidence 4433334677777 59999999999999999999999998766554432100 01 2332222
Q ss_pred --cCCChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 80 --VKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 80 --vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+.+...++.+++++.....+=++||++...
T Consensus 62 ~D~~d~~~~~~~~~~~~~~~g~id~vi~~Ag~ 93 (287)
T PRK06194 62 TDVSDAAQVEALADAALERFGAVHLLFNNAGV 93 (287)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 334445666666666554445788887654
No 429
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=94.45 E-value=0.41 Score=46.89 Aligned_cols=111 Identities=14% Similarity=0.088 Sum_probs=64.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
.++-|+|.|..+.++++.+...||+|+++|.+++......-.+. .......+++....+...+.|+++.-+. ..
T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~t~vvi~th~h-~~ 174 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFPEDLPDGV-----ATLVTDEPEAEVAEAPPGSYFLVLTHDH-AL 174 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccccccCCCCc-----eEEecCCHHHHHhcCCCCcEEEEEeCCh-HH
Confidence 57999999999999999999999999999977652211110000 1123345666666555567777777654 34
Q ss_pred H-HHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCc
Q 010702 87 D-QTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126 (503)
Q Consensus 87 ~-~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi 126 (503)
| .++..+++.. +-.-|=-.++ -....++.+.|.+.|+
T Consensus 175 D~~~L~~aL~~~-~~~YIG~lGS--r~k~~~~~~~L~~~G~ 212 (246)
T TIGR02964 175 DLELCHAALRRG-DFAYFGLIGS--KTKRARFEHRLRARGV 212 (246)
T ss_pred HHHHHHHHHhCC-CCcEEEEeCC--HHHHHHHHHHHHhcCC
Confidence 4 3445554221 1122322222 1344555666666553
No 430
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=94.43 E-value=0.16 Score=53.32 Aligned_cols=124 Identities=16% Similarity=0.173 Sum_probs=68.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc-ccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-REGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~-~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
..+|.|||+|-+|+.+|.+|+..|. +++++|.+.=....+..+.. .....+-.-+....+.+.++ .+++-+.+.+..
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~-np~v~i~~~~~~ 120 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEI-NPLVNVRLHEFR 120 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHh-CCCcEEEEEecc
Confidence 3589999999999999999999997 68899877543333332210 00000000011112222221 155556555432
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
-. .+-+.++ +..-++|||++-. +..-..+.+.+...++-|+.+.+.|
T Consensus 121 i~-~~~~~~~---~~~~D~Vvd~~d~-~~~r~~ln~~~~~~~~p~v~~~~~g 167 (392)
T PRK07878 121 LD-PSNAVEL---FSQYDLILDGTDN-FATRYLVNDAAVLAGKPYVWGSIYR 167 (392)
T ss_pred CC-hhHHHHH---HhcCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 11 1122233 3445899998754 3333345556677788888766554
No 431
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.42 E-value=0.27 Score=47.96 Aligned_cols=88 Identities=15% Similarity=0.192 Sum_probs=53.3
Q ss_pred CCcCCCCc-EEEEccc---HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEE
Q 010702 1 MEASALSR-IGLAGLA---VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSV 76 (503)
Q Consensus 1 M~~~~~~~-IgIIGlG---~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvI 76 (503)
|+..+..| +-|.|.+ -+|.++|+.|++.|++|.+.+|+. +.++..++. . . .. ...+
T Consensus 1 ~~~~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~-~~~~~~~~~--------~--~------~~---~~~~ 60 (252)
T PRK06079 1 MSGILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND-RMKKSLQKL--------V--D------EE---DLLV 60 (252)
T ss_pred CccccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch-HHHHHHHhh--------c--c------Cc---eeEE
Confidence 66665444 5556874 799999999999999999999883 332222110 0 0 00 1122
Q ss_pred EEecCCChhHHHHHHHHHhcCCCCCEEEecCC
Q 010702 77 IILVKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~iIId~st 108 (503)
-.=+.+...++++++.+.....+=+++|++..
T Consensus 61 ~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~nAg 92 (252)
T PRK06079 61 ECDVASDESIERAFATIKERVGKIDGIVHAIA 92 (252)
T ss_pred eCCCCCHHHHHHHHHHHHHHhCCCCEEEEccc
Confidence 22234445677777777655444467777654
No 432
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=94.41 E-value=0.079 Score=54.27 Aligned_cols=92 Identities=15% Similarity=0.160 Sum_probs=55.8
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCC---cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHH-hccCCCcEEEEec
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEKGF---PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV-LSIQRPRSVIILV 80 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~G~---~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~-~~l~~~dvIil~v 80 (503)
.++|+|||+ |..|..|.+.|.++.| ++..+..+...-+.+.-.+. .+... ++++.. .+ +|++|+++
T Consensus 4 ~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~-----~~~v~-~~~~~~~~~---~Dvvf~a~ 74 (336)
T PRK08040 4 GWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGK-----SVTVQ-DAAEFDWSQ---AQLAFFVA 74 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCc-----ceEEE-eCchhhccC---CCEEEECC
Confidence 468999996 9999999999998544 45544322111111110010 12222 334332 33 89999999
Q ss_pred CCChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
|.+ ...++...+. ..|..|||.|+.+
T Consensus 75 p~~-~s~~~~~~~~---~~g~~VIDlS~~f 100 (336)
T PRK08040 75 GRE-ASAAYAEEAT---NAGCLVIDSSGLF 100 (336)
T ss_pred CHH-HHHHHHHHHH---HCCCEEEECChHh
Confidence 986 4455555443 3689999999753
No 433
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=94.41 E-value=0.49 Score=50.19 Aligned_cols=74 Identities=16% Similarity=0.246 Sum_probs=50.6
Q ss_pred CcEEEEcccHH-HHHHHHHHHhC-----CCcEEEEeCChhHHHHHHH---hhcc-cC-CCCeeeeCCHHHHHhccCCCcE
Q 010702 7 SRIGLAGLAVM-GQNLALNVAEK-----GFPISVYNRTTSKVDETLD---RAHR-EG-QLPLTGHYTPRDFVLSIQRPRS 75 (503)
Q Consensus 7 ~~IgIIGlG~m-G~~lA~~L~~~-----G~~V~v~dr~~~~~~~l~~---~~~~-~g-~~~i~~~~s~~e~~~~l~~~dv 75 (503)
+||+|||.|.. ...|...|+.. +-+|+++|+++++.+...+ .-.. .| .+++..+++.++++.. +|+
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~g---ADf 77 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIID---ADF 77 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCC---CCE
Confidence 58999999884 23455556543 3579999999987654321 1110 01 1357888899999887 999
Q ss_pred EEEecCCC
Q 010702 76 VIILVKAG 83 (503)
Q Consensus 76 Iil~vp~~ 83 (503)
||..+..+
T Consensus 78 Vi~~irvG 85 (425)
T cd05197 78 VINQFRVG 85 (425)
T ss_pred EEEeeecC
Confidence 99998654
No 434
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=94.39 E-value=0.23 Score=48.14 Aligned_cols=86 Identities=13% Similarity=0.198 Sum_probs=57.7
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|-|.| .|.+|..+++.|+++|++|.+.+|++++.+++...... .. .+..++..-+.+...
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~----------------~~-~~~~~~~~Dl~~~~~ 67 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQK----------------AG-GKAIGVAMDVTDEEA 67 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh----------------cC-CcEEEEEcCCCCHHH
Confidence 4688888 69999999999999999999999998876665432110 00 002233333445556
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
++.+++++.....+-++||++...
T Consensus 68 ~~~~~~~~~~~~~~~d~vi~~a~~ 91 (258)
T PRK12429 68 INAGIDYAVETFGGVDILVNNAGI 91 (258)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 667777776655556777776643
No 435
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=94.38 E-value=0.34 Score=50.98 Aligned_cols=111 Identities=12% Similarity=0.100 Sum_probs=71.7
Q ss_pred CCcEEEEcccHHHHHHH-HHHHh-----CCCcEEEEeCChhHHHHH-------HHhhcccCCCCeeeeCCHHHHHhccCC
Q 010702 6 LSRIGLAGLAVMGQNLA-LNVAE-----KGFPISVYNRTTSKVDET-------LDRAHREGQLPLTGHYTPRDFVLSIQR 72 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA-~~L~~-----~G~~V~v~dr~~~~~~~l-------~~~~~~~g~~~i~~~~s~~e~~~~l~~ 72 (503)
+.||+|||.|..+.+.- ..+.. .+.++.++|.++++.+.. .++... ..++..++|.+++++.
T Consensus 3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~--~~kv~~ttd~~eAl~g--- 77 (442)
T COG1486 3 KFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGA--PVKVEATTDRREALEG--- 77 (442)
T ss_pred cceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCC--CeEEEEecCHHHHhcC---
Confidence 46899999999886632 22222 245799999999886522 222111 1257888999999888
Q ss_pred CcEEEEecCCCh-----------------------------------hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHH
Q 010702 73 PRSVIILVKAGS-----------------------------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERR 117 (503)
Q Consensus 73 ~dvIil~vp~~~-----------------------------------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~ 117 (503)
+|+|+.++..+. .+-+.++.+.. +.|+..+++.+|-....|+.+
T Consensus 78 AdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~-~~P~Aw~lNytNP~~~vTeAv 156 (442)
T COG1486 78 ADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEK-VCPNAWMLNYTNPAAIVTEAV 156 (442)
T ss_pred CCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHH-hCCCceEEeccChHHHHHHHH
Confidence 999999984431 11122233333 447888888888776666665
Q ss_pred HHHHH
Q 010702 118 IHEAS 122 (503)
Q Consensus 118 ~~~l~ 122 (503)
.+...
T Consensus 157 ~r~~~ 161 (442)
T COG1486 157 RRLYP 161 (442)
T ss_pred HHhCC
Confidence 55444
No 436
>PRK06139 short chain dehydrogenase; Provisional
Probab=94.38 E-value=0.27 Score=50.32 Aligned_cols=84 Identities=13% Similarity=0.139 Sum_probs=56.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcE--EEEecCCC
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRS--VIILVKAG 83 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dv--Iil~vp~~ 83 (503)
+.|-|.|. |-+|..+|+.|++.|++|.+.+|++++.+++.+... +. . +++ +..=+.+.
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~--------------~~--g---~~~~~~~~Dv~d~ 68 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECR--------------AL--G---AEVLVVPTDVTDA 68 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH--------------hc--C---CcEEEEEeeCCCH
Confidence 35677776 899999999999999999999999988766554311 00 1 222 22334455
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
.+++.+++.+.....+=+++|++...
T Consensus 69 ~~v~~~~~~~~~~~g~iD~lVnnAG~ 94 (330)
T PRK06139 69 DQVKALATQAASFGGRIDVWVNNVGV 94 (330)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 56777777766554444788877543
No 437
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.36 E-value=0.32 Score=48.13 Aligned_cols=90 Identities=17% Similarity=0.145 Sum_probs=52.6
Q ss_pred CCcCCCCcEE-EEccc---HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcE-
Q 010702 1 MEASALSRIG-LAGLA---VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRS- 75 (503)
Q Consensus 1 M~~~~~~~Ig-IIGlG---~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dv- 75 (503)
|+..++.|+. |.|.+ -+|..+|+.|++.|++|.+.+|+.+..+.+.+. .+.+. ..+
T Consensus 1 ~~~~l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~------------------~~~~g-~~~~ 61 (271)
T PRK06505 1 MEGLMQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPL------------------AESLG-SDFV 61 (271)
T ss_pred CccccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHH------------------HHhcC-CceE
Confidence 5554544544 55876 699999999999999999999875432222211 00000 111
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 76 VIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 76 Iil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+-.=+.+...++.+++.+.....+=+++|++...
T Consensus 62 ~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG~ 95 (271)
T PRK06505 62 LPCDVEDIASVDAVFEALEKKWGKLDFVVHAIGF 95 (271)
T ss_pred EeCCCCCHHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence 1111334456777777766655455677776543
No 438
>PRK07478 short chain dehydrogenase; Provisional
Probab=94.36 E-value=0.27 Score=47.74 Aligned_cols=86 Identities=15% Similarity=0.112 Sum_probs=54.1
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+++-|.| .|.+|..+|+.|+++|++|.+.+|++++.+++.+..... -.. ..++..-+.+...
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~D~~~~~~ 69 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAE--------------GGE---AVALAGDVRDEAY 69 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCc---EEEEEcCCCCHHH
Confidence 4577777 589999999999999999999999988776655431100 000 1122222334445
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
++.+++++.....+=+++|++...
T Consensus 70 ~~~~~~~~~~~~~~id~li~~ag~ 93 (254)
T PRK07478 70 AKALVALAVERFGGLDIAFNNAGT 93 (254)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 666666666544444677776543
No 439
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=94.35 E-value=0.13 Score=52.32 Aligned_cols=74 Identities=19% Similarity=0.251 Sum_probs=56.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||- ..+|.++|..|.++|..|+++.... .++++...+ +|+||.++.-..-
T Consensus 215 K~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T---------------------~nl~~~~~~---ADIvIsAvGkp~~ 270 (345)
T PLN02897 215 KNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT---------------------KDPEQITRK---ADIVIAAAGIPNL 270 (345)
T ss_pred CEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC---------------------CCHHHHHhh---CCEEEEccCCcCc
Confidence 57999995 7789999999999999999886321 245566666 9999999977543
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+. ..++++|.+|||.+...
T Consensus 271 v~------~d~vk~GavVIDVGin~ 289 (345)
T PLN02897 271 VR------GSWLKPGAVVIDVGTTP 289 (345)
T ss_pred cC------HHHcCCCCEEEEccccc
Confidence 22 13478999999998653
No 440
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=94.34 E-value=0.14 Score=52.54 Aligned_cols=74 Identities=20% Similarity=0.287 Sum_probs=57.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.||| -..+|.++|..|.++|..|+++... +.++++...+ +|+||.++.-..-
T Consensus 232 K~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~---------------------T~nl~~~~r~---ADIVIsAvGkp~~ 287 (364)
T PLN02616 232 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSR---------------------TKNPEEITRE---ADIIISAVGQPNM 287 (364)
T ss_pred CEEEEECCCccccHHHHHHHHHCCCeEEEeCCC---------------------CCCHHHHHhh---CCEEEEcCCCcCc
Confidence 5799999 4789999999999999999998532 1355666666 9999999977543
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
++ ...+++|.+|||.+...
T Consensus 288 i~------~d~vK~GAvVIDVGIn~ 306 (364)
T PLN02616 288 VR------GSWIKPGAVVIDVGINP 306 (364)
T ss_pred CC------HHHcCCCCEEEeccccc
Confidence 22 13478999999998654
No 441
>PRK08267 short chain dehydrogenase; Provisional
Probab=94.34 E-value=0.37 Score=46.99 Aligned_cols=84 Identities=14% Similarity=0.170 Sum_probs=55.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+++-|+| .|.+|..+++.|+++|++|.+.+|+++..+++..... . .. ..++..=+.+...
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~----------~------~~---~~~~~~D~~~~~~ 62 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG----------A------GN---AWTGALDVTDRAA 62 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc----------C------Cc---eEEEEecCCCHHH
Confidence 4688887 5999999999999999999999999988776654310 0 01 2333333444455
Q ss_pred HHHHHHHHHhc-CCCCCEEEecCCC
Q 010702 86 VDQTIAALSEH-MSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~-l~~g~iIId~st~ 109 (503)
+++++..+.+. ..+=++||++...
T Consensus 63 v~~~~~~~~~~~~~~id~vi~~ag~ 87 (260)
T PRK08267 63 WDAALADFAAATGGRLDVLFNNAGI 87 (260)
T ss_pred HHHHHHHHHHHcCCCCCEEEECCCC
Confidence 66666655443 2333677776543
No 442
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=94.33 E-value=0.056 Score=56.43 Aligned_cols=40 Identities=20% Similarity=0.332 Sum_probs=34.8
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 1 M~~~~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
|+...+.+|.|||.|..|.++|..|+++|++|.++++.+.
T Consensus 1 ~~~~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~ 40 (392)
T PRK08773 1 MSRRSRRDAVIVGGGVVGAACALALADAGLSVALVEGREP 40 (392)
T ss_pred CCCCCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence 4544456899999999999999999999999999998753
No 443
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=94.31 E-value=0.35 Score=52.02 Aligned_cols=116 Identities=13% Similarity=0.213 Sum_probs=74.5
Q ss_pred CcEEEEccc----------HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc--------c------cCC-CCeeeeC
Q 010702 7 SRIGLAGLA----------VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH--------R------EGQ-LPLTGHY 61 (503)
Q Consensus 7 ~~IgIIGlG----------~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~--------~------~g~-~~i~~~~ 61 (503)
++|+|+|+. .-...++..|.+.|.+|.+||.--...+.....+. . .+. -++..+.
T Consensus 325 ~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (473)
T PLN02353 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQVSVVW 404 (473)
T ss_pred CEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccceeeeC
Confidence 589999983 46778999999999999999976433211101100 0 000 0245566
Q ss_pred CHHHHHhccCCCcEEEEecCCChhHHHH-HHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEeccc
Q 010702 62 TPRDFVLSIQRPRSVIILVKAGSPVDQT-IAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (503)
Q Consensus 62 s~~e~~~~l~~~dvIil~vp~~~~v~~v-l~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (503)
++.++++. +|+|++++..+ ..+.. +..+.+.+.+..+|+|+.+.... +.+++.|+.|++.+
T Consensus 405 ~~~~a~~~---aD~vvi~t~~~-ef~~l~~~~~~~~m~~~~~viD~rn~l~~------~~~~~~G~~y~~~G 466 (473)
T PLN02353 405 DAYEATKG---AHGICILTEWD-EFKTLDYQKIYDNMQKPAFVFDGRNVLDH------EKLREIGFIVYSIG 466 (473)
T ss_pred CHHHHhcC---CCEEEECCCCh-HhcccCHHHHHHhccCCCEEEECCCCCCH------HHHHhCCcEEEEeC
Confidence 77777776 99999999885 44432 35555555555589999988742 22334588887754
No 444
>PRK08643 acetoin reductase; Validated
Probab=94.28 E-value=0.27 Score=47.79 Aligned_cols=86 Identities=12% Similarity=0.135 Sum_probs=55.2
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+++-|+| .|.+|..++..|+++|++|.+.+|++++.+++..... +.... ...+-.-+.+...
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~--------------~~~~~---~~~~~~Dl~~~~~ 65 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLS--------------KDGGK---AIAVKADVSDRDQ 65 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--------------hcCCe---EEEEECCCCCHHH
Confidence 3566666 6999999999999999999999999877665543211 00000 1122222444456
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
++++++++.....+=+++|++...
T Consensus 66 ~~~~~~~~~~~~~~id~vi~~ag~ 89 (256)
T PRK08643 66 VFAAVRQVVDTFGDLNVVVNNAGV 89 (256)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 677777776655455778877654
No 445
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=94.27 E-value=0.61 Score=49.38 Aligned_cols=73 Identities=10% Similarity=0.098 Sum_probs=49.0
Q ss_pred CcEEEEcccHHHH-HHHHHHHhC-----CCcEEEEeCC-hhHHHHHHH---hhcc-cC-CCCeeeeCCHHHHHhccCCCc
Q 010702 7 SRIGLAGLAVMGQ-NLALNVAEK-----GFPISVYNRT-TSKVDETLD---RAHR-EG-QLPLTGHYTPRDFVLSIQRPR 74 (503)
Q Consensus 7 ~~IgIIGlG~mG~-~lA~~L~~~-----G~~V~v~dr~-~~~~~~l~~---~~~~-~g-~~~i~~~~s~~e~~~~l~~~d 74 (503)
|||+|||.|..-. .+...|+.. +-+|+++|++ +++++.... .... .+ .+.+..+.+.++++.. +|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~g---ad 77 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEG---AD 77 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCC---CC
Confidence 5899999998643 345555542 3579999999 787543221 1110 01 1357788899999887 99
Q ss_pred EEEEecCC
Q 010702 75 SVIILVKA 82 (503)
Q Consensus 75 vIil~vp~ 82 (503)
+||+++..
T Consensus 78 fVi~~~~v 85 (419)
T cd05296 78 FVFTQIRV 85 (419)
T ss_pred EEEEEEee
Confidence 99999743
No 446
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.26 E-value=0.16 Score=50.68 Aligned_cols=74 Identities=14% Similarity=0.257 Sum_probs=55.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhC----CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEK----GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~----G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
++|.|||- ..+|.++|..|.++ +..|+++... +.++++.+++ +|+||.++.
T Consensus 154 k~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~---------------------T~~l~~~~~~---ADIvV~AvG 209 (287)
T PRK14181 154 RHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ---------------------SENLTEILKT---ADIIIAAIG 209 (287)
T ss_pred CEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEccC
Confidence 57999995 77999999999988 6788887532 1345666666 999999997
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
-+.-+. ..++++|.+|||.+...
T Consensus 210 ~p~~i~------~~~ik~GavVIDvGin~ 232 (287)
T PRK14181 210 VPLFIK------EEMIAEKAVIVDVGTSR 232 (287)
T ss_pred CcCccC------HHHcCCCCEEEEecccc
Confidence 653222 13578999999998654
No 447
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=94.24 E-value=0.3 Score=47.12 Aligned_cols=94 Identities=16% Similarity=0.167 Sum_probs=64.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCe-eeeCCHHHHHhccCCCcEEEEe-----c
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIIL-----V 80 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i-~~~~s~~e~~~~l~~~dvIil~-----v 80 (503)
++|-=||+| |..|+.-|++.|.+|++.|.+++.++.........| ..+ -...+.+++...=..-|+|+.+ |
T Consensus 61 ~~vLDvGCG--gG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~g-v~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 61 LRVLDVGCG--GGILSEPLARLGASVTGIDASEKPIEVAKLHALESG-VNIDYRQATVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred CeEEEecCC--ccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcc-ccccchhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence 468888998 779999999999999999999988876654433221 111 1234566666532347988776 4
Q ss_pred CCChhHHHHHHHHHhcCCCCCEEEec
Q 010702 81 KAGSPVDQTIAALSEHMSPGDCIIDG 106 (503)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~ 106 (503)
|++ +.++......++||-+++..
T Consensus 138 ~dp---~~~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 138 PDP---ESFLRACAKLVKPGGILFLS 160 (243)
T ss_pred CCH---HHHHHHHHHHcCCCcEEEEe
Confidence 554 44667777778888777653
No 448
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=94.24 E-value=0.21 Score=50.31 Aligned_cols=108 Identities=15% Similarity=0.034 Sum_probs=73.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh--
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS-- 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~-- 84 (503)
.+|+|||--.=-..++..|.+.|++|.++.-+.+.. ... ++..+++.+++++. +|+|+..+|...
T Consensus 3 ~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~---~~~-------g~~~~~~~~~~~~~---ad~ii~~~p~~~~~ 69 (296)
T PRK08306 3 KHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDH---GFT-------GATKSSSLEEALSD---VDVIILPVPGTNDE 69 (296)
T ss_pred cEEEEEcCcHHHHHHHHHHHHCCCEEEEEecccccc---ccC-------CceeeccHHHHhcc---CCEEEECCccccCC
Confidence 579999998888999999999999999876543211 111 25667778887776 999999988521
Q ss_pred -hHHHH-------H-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEeccc
Q 010702 85 -PVDQT-------I-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (503)
Q Consensus 85 -~v~~v-------l-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (503)
.++.. + .+++..++++.+++ .+...+.. .+.+.++|+..++.+
T Consensus 70 ~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~~~----~~~~~~~gi~~~~~~ 121 (296)
T PRK08306 70 GNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANPYL----KELAKETNRKLVELF 121 (296)
T ss_pred ceeeccccccCCcchHHHHHhcCCCCEEE-EecCCHHH----HHHHHHCCCeEEEEe
Confidence 11111 1 45677788998665 35554442 244668898887643
No 449
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=94.21 E-value=0.07 Score=54.47 Aligned_cols=68 Identities=18% Similarity=0.283 Sum_probs=47.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee-eCCH---HHHHhccCCCcEE---EE
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG-HYTP---RDFVLSIQRPRSV---II 78 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~-~~s~---~e~~~~l~~~dvI---il 78 (503)
+++|||||-|..|+.|+..-.+-|++|.+.|.+++.-....... .+.. .+++ .++++. ||+| |.
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~------~i~~~~dD~~al~ela~~---~DViT~EfE 71 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADR------VIVAAYDDPEALRELAAK---CDVITYEFE 71 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccc------eeecCCCCHHHHHHHHhh---CCEEEEeec
Confidence 36899999999999999999999999999998887544333221 1222 2333 455555 9987 44
Q ss_pred ecCC
Q 010702 79 LVKA 82 (503)
Q Consensus 79 ~vp~ 82 (503)
-||.
T Consensus 72 ~V~~ 75 (375)
T COG0026 72 NVPA 75 (375)
T ss_pred cCCH
Confidence 5555
No 450
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=94.19 E-value=0.14 Score=51.89 Aligned_cols=87 Identities=15% Similarity=0.191 Sum_probs=63.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
+++-|.|.|..|+++|.++...|-+|.|++.+|-+.-+..-.| ++ ..+.++++.. +|++|.++-.-
T Consensus 210 K~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdG-------f~-V~~m~~Aa~~---gDifiT~TGnk--- 275 (420)
T COG0499 210 KNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDG-------FR-VMTMEEAAKT---GDIFVTATGNK--- 275 (420)
T ss_pred ceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcC-------cE-EEEhHHhhhc---CCEEEEccCCc---
Confidence 3577889999999999999999999999999997654444333 33 3467777776 89999887553
Q ss_pred HHHH-HHHHhcCCCCCEEEecCC
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st 108 (503)
+|+ .+-...++.|.|+.+.+-
T Consensus 276 -dVi~~eh~~~MkDgaIl~N~GH 297 (420)
T COG0499 276 -DVIRKEHFEKMKDGAILANAGH 297 (420)
T ss_pred -CccCHHHHHhccCCeEEecccc
Confidence 344 233344778888877653
No 451
>PRK08589 short chain dehydrogenase; Validated
Probab=94.19 E-value=0.35 Score=47.68 Aligned_cols=91 Identities=15% Similarity=0.190 Sum_probs=57.2
Q ss_pred CCcCCCCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 1 MEASALSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 1 M~~~~~~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
|+.-..+++-|.|. |.+|..+|+.|+++|++|.+.+|+ +..+++.+.... .-.. ...+..=
T Consensus 1 m~~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~--------------~~~~---~~~~~~D 62 (272)
T PRK08589 1 MKRLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKS--------------NGGK---AKAYHVD 62 (272)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHh--------------cCCe---EEEEEee
Confidence 44322345667775 899999999999999999999999 555544432110 0001 2233333
Q ss_pred cCCChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+.+...++.+++.+.....+=+++|++...
T Consensus 63 l~~~~~~~~~~~~~~~~~g~id~li~~Ag~ 92 (272)
T PRK08589 63 ISDEQQVKDFASEIKEQFGRVDVLFNNAGV 92 (272)
T ss_pred cCCHHHHHHHHHHHHHHcCCcCEEEECCCC
Confidence 455556777777776655444778877653
No 452
>PRK07063 short chain dehydrogenase; Provisional
Probab=94.18 E-value=0.29 Score=47.67 Aligned_cols=87 Identities=18% Similarity=0.216 Sum_probs=55.0
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++-|.| .|.+|..+++.|+++|++|.+.+|+++..+++.++... .... ....++..=+.+...+
T Consensus 9 ~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~--------------~~~~-~~~~~~~~Dl~~~~~~ 73 (260)
T PRK07063 9 VALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIAR--------------DVAG-ARVLAVPADVTDAASV 73 (260)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--------------ccCC-ceEEEEEccCCCHHHH
Confidence 466666 58999999999999999999999998877665543210 0000 0012222233444566
Q ss_pred HHHHHHHHhcCCCCCEEEecCCC
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+.+++++.....+=+++|++...
T Consensus 74 ~~~~~~~~~~~g~id~li~~ag~ 96 (260)
T PRK07063 74 AAAVAAAEEAFGPLDVLVNNAGI 96 (260)
T ss_pred HHHHHHHHHHhCCCcEEEECCCc
Confidence 77777766655455777776543
No 453
>PRK05866 short chain dehydrogenase; Provisional
Probab=94.12 E-value=0.29 Score=49.05 Aligned_cols=86 Identities=22% Similarity=0.256 Sum_probs=56.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|-|.|. |.+|..+|..|+++|++|.+.+|+.++.+++.+.... .-.. ..++-.-+.+...
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~--------------~~~~---~~~~~~Dl~d~~~ 103 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITR--------------AGGD---AMAVPCDLSDLDA 103 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh--------------cCCc---EEEEEccCCCHHH
Confidence 45777775 9999999999999999999999998877665543110 0000 2222223334456
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
++++++.+...+.+=+++|++...
T Consensus 104 v~~~~~~~~~~~g~id~li~~AG~ 127 (293)
T PRK05866 104 VDALVADVEKRIGGVDILINNAGR 127 (293)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 667777666655555778776543
No 454
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=94.12 E-value=0.36 Score=48.94 Aligned_cols=77 Identities=10% Similarity=0.111 Sum_probs=51.7
Q ss_pred CCcCCCCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHH---HHHhhcccCCC-----CeeeeCCHHHHHhccC
Q 010702 1 MEASALSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDE---TLDRAHREGQL-----PLTGHYTPRDFVLSIQ 71 (503)
Q Consensus 1 M~~~~~~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~---l~~~~~~~g~~-----~i~~~~s~~e~~~~l~ 71 (503)
|.....++|.|-|+ |.+|+.+...|+++||+|.+--|+++.-+. +.+....+..+ .+.-..++.++++.
T Consensus 1 m~~~~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~g-- 78 (327)
T KOG1502|consen 1 MDQDEGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDG-- 78 (327)
T ss_pred CCCCCCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhC--
Confidence 33334578999985 999999999999999999999999886322 33221110001 22334466667766
Q ss_pred CCcEEEEec
Q 010702 72 RPRSVIILV 80 (503)
Q Consensus 72 ~~dvIil~v 80 (503)
||.||-+.
T Consensus 79 -cdgVfH~A 86 (327)
T KOG1502|consen 79 -CDGVFHTA 86 (327)
T ss_pred -CCEEEEeC
Confidence 99988654
No 455
>PRK12829 short chain dehydrogenase; Provisional
Probab=94.11 E-value=0.36 Score=46.95 Aligned_cols=85 Identities=16% Similarity=0.217 Sum_probs=55.2
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|-|+| .|.+|..++..|+++|++|.+.+|+++..+++.+.... . . ..++..=+.+...
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-----------~-----~---~~~~~~D~~~~~~ 72 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPG-----------A-----K---VTATVADVADPAQ 72 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-----------C-----c---eEEEEccCCCHHH
Confidence 5788997 59999999999999999999999998766555432110 0 0 1222222333345
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
++.+++++.+.+.+=+.||++....
T Consensus 73 ~~~~~~~~~~~~~~~d~vi~~ag~~ 97 (264)
T PRK12829 73 VERVFDTAVERFGGLDVLVNNAGIA 97 (264)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCC
Confidence 5666666655555557777766543
No 456
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=94.09 E-value=0.36 Score=46.90 Aligned_cols=86 Identities=12% Similarity=0.138 Sum_probs=55.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|-|.| .|.+|..+++.|+++|++|.+.+|+++..+++.+... +.-.. .+.+..-+.+...
T Consensus 12 k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~--------------~~~~~---~~~~~~Dl~~~~~ 74 (256)
T PRK06124 12 QVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALR--------------AAGGA---AEALAFDIADEEA 74 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHH--------------hcCCc---eEEEEccCCCHHH
Confidence 4677777 5999999999999999999999999877665543211 00000 2233333444455
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+..+++++.....+=+.+|.+...
T Consensus 75 ~~~~~~~~~~~~~~id~vi~~ag~ 98 (256)
T PRK06124 75 VAAAFARIDAEHGRLDILVNNVGA 98 (256)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 666677666544444667766543
No 457
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=94.05 E-value=0.2 Score=50.96 Aligned_cols=187 Identities=12% Similarity=0.054 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhCCCcEEEEeCChhHHHHHHH----hhcc---cCCC----------CeeeeCCHHHHHhccCCCcEEEEe
Q 010702 17 MGQNLALNVAEKGFPISVYNRTTSKVDETLD----RAHR---EGQL----------PLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 17 mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~----~~~~---~g~~----------~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
||.+||..+..+|++|...|.+..-.+.-.. .... .+.+ +.....+..+ +..+|.++.+
T Consensus 1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~----~~~~dmviea 76 (380)
T KOG1683|consen 1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTG----FANADMVIEA 76 (380)
T ss_pred CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhccccccccc----ccccceeccc
Confidence 8999999999999999999999765432111 1000 0000 1222222223 3348999888
Q ss_pred cCCChhHH-HHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc--CccEeccc-CCCChhhhhcCCcccCCCCHHHH
Q 010702 80 VKAGSPVD-QTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK--GLLYLGMG-VSGGEEGARHGPSLMPGGSFEAY 155 (503)
Q Consensus 80 vp~~~~v~-~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~--gi~~i~~p-vsgg~~~a~~G~~i~~gg~~~a~ 155 (503)
|-.+-.++ +++.+|....++..++-..+|+.+.+.........++ |.||.... .+.--+- ..-..++..+.
T Consensus 77 v~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEi-----i~~~~tS~~~i 151 (380)
T KOG1683|consen 77 VFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEI-----ILALYTSKLTI 151 (380)
T ss_pred hhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHH-----HHhcCCCchHH
Confidence 87765554 4456776666666655554554443332211111221 34443211 0000000 00011222222
Q ss_pred HHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 010702 156 NNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEW 227 (503)
Q Consensus 156 ~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~ 227 (503)
..+-..=..++ +-++.+|. ..|.++-.+. -...+++..++...| +++..++.+...+
T Consensus 152 A~Ain~~~~~g------k~~vvVg~-c~gf~v~r~l-------~~y~~~~~~~l~e~g-~~p~~iD~~~t~f 208 (380)
T KOG1683|consen 152 ATAINGGSPAG------KLPVVVGN-CCGFRVNRLL-------PPYTIGLNELLLEIG-ADPWLIDSLITKF 208 (380)
T ss_pred HHHHhcccccC------CccEEecc-CCceEEEecc-------cHHHHHHHHHHHHcC-CCHHHHHHHHHhc
Confidence 22222212222 44455554 4455443321 123467778888888 9999999887543
No 458
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=94.04 E-value=0.06 Score=56.57 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=31.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
|+|.|||.|.+|.+.|..|+++|++|+++++...
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 4799999999999999999999999999999754
No 459
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=94.03 E-value=0.14 Score=53.06 Aligned_cols=94 Identities=15% Similarity=0.230 Sum_probs=54.4
Q ss_pred CCcEEEEcc-cHHHHHHHH-HHHhCCCc---EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 6 LSRIGLAGL-AVMGQNLAL-NVAEKGFP---ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~-~L~~~G~~---V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
|++|||||+ |.+|.-|.+ .|.+..+. +..+.... .......-.... ..+....+.+++ .+ +|++|+++
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~-sg~~~~~f~g~~--~~v~~~~~~~~~-~~---~Divf~a~ 73 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQ-AGGAAPSFGGKE--GTLQDAFDIDAL-KK---LDIIITCQ 73 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchh-hCCcccccCCCc--ceEEecCChhHh-cC---CCEEEECC
Confidence 368999996 999999998 55555666 66654321 111111000000 011111234444 43 99999999
Q ss_pred CCChhHHHHHHHHHhcCCCC--CEEEecCCCC
Q 010702 81 KAGSPVDQTIAALSEHMSPG--DCIIDGGNEW 110 (503)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g--~iIId~st~~ 110 (503)
|.+ ..+++...+.. .| .+|||.|+..
T Consensus 74 ~~~-~s~~~~~~~~~---aG~~~~VID~Ss~f 101 (369)
T PRK06598 74 GGD-YTNEVYPKLRA---AGWQGYWIDAASTL 101 (369)
T ss_pred CHH-HHHHHHHHHHh---CCCCeEEEECChHH
Confidence 985 55555555433 57 5799998753
No 460
>PRK05868 hypothetical protein; Validated
Probab=94.02 E-value=0.061 Score=55.95 Aligned_cols=35 Identities=17% Similarity=0.428 Sum_probs=32.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
|++|.|||.|..|..+|..|+++|++|+++++.++
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 46899999999999999999999999999999875
No 461
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=93.94 E-value=0.46 Score=46.42 Aligned_cols=40 Identities=13% Similarity=0.284 Sum_probs=33.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETL 46 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 46 (503)
+++-|.| .|.+|..+|+.|++.|++|.+.+|+.+..+++.
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~ 46 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELE 46 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 4566777 488999999999999999999999987766654
No 462
>PRK06057 short chain dehydrogenase; Provisional
Probab=93.92 E-value=0.46 Score=46.15 Aligned_cols=80 Identities=15% Similarity=0.077 Sum_probs=52.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|-|+|. |.+|..+++.|+++|++|.+.+|++.+.+...+.. . ..++..-+.+...
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~------------------~----~~~~~~D~~~~~~ 65 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEV------------------G----GLFVPTDVTDEDA 65 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHc------------------C----CcEEEeeCCCHHH
Confidence 46888886 99999999999999999999999987655443321 0 1222223334445
Q ss_pred HHHHHHHHHhcCCCCCEEEecCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st 108 (503)
++.+++.+.....+=+.||++..
T Consensus 66 ~~~~~~~~~~~~~~id~vi~~ag 88 (255)
T PRK06057 66 VNALFDTAAETYGSVDIAFNNAG 88 (255)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 66666666554444466666654
No 463
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=93.91 E-value=0.22 Score=48.67 Aligned_cols=116 Identities=15% Similarity=0.178 Sum_probs=68.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEE--------eCChhHHHHHHHhhcccCC-C-C--------eeeeCCHH-HHH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVY--------NRTTSKVDETLDRAHREGQ-L-P--------LTGHYTPR-DFV 67 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~--------dr~~~~~~~l~~~~~~~g~-~-~--------i~~~~s~~-e~~ 67 (503)
+++.|-|.|.+|..+|+.|.+.|..|... |.+.-.++++.+.....+. + . .... +.+ ++.
T Consensus 33 ~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~il 111 (244)
T PF00208_consen 33 KRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYI-PNDDEIL 111 (244)
T ss_dssp CEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEE-CHHCHGG
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEe-ccccccc
Confidence 58999999999999999999999876544 6555455555542111110 0 0 1111 222 444
Q ss_pred hccCCCcEEEEecCCChhHHHHHH-HHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 68 LSIQRPRSVIILVKAGSPVDQTIA-ALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 68 ~~l~~~dvIil~vp~~~~v~~vl~-~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
.. +||+++-|--.+....+.+. .+.+ .=++|+...|.... .+....|.++|+.++.
T Consensus 112 ~~--~~DiliP~A~~~~I~~~~~~~~i~~---~akiIvegAN~p~t--~~a~~~L~~rGI~viP 168 (244)
T PF00208_consen 112 SV--DCDILIPCALGNVINEDNAPSLIKS---GAKIIVEGANGPLT--PEADEILRERGILVIP 168 (244)
T ss_dssp TS--SSSEEEEESSSTSBSCHHHCHCHHT---T-SEEEESSSSSBS--HHHHHHHHHTT-EEE-
T ss_pred cc--cccEEEEcCCCCeeCHHHHHHHHhc---cCcEEEeCcchhcc--HHHHHHHHHCCCEEEc
Confidence 32 49999998655433333333 2221 13688888887653 3334488999987774
No 464
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=93.90 E-value=0.49 Score=46.89 Aligned_cols=122 Identities=16% Similarity=0.139 Sum_probs=67.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHhhcc-cCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
..+|.|||+|.+|+.+|.+|++.| -+++++|.+.-....+..+... ....+-.-+.-..+-+..+ .+++-+..++..
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~I-NP~~~V~~i~~~ 108 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQI-NPECRVTVVDDF 108 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhH-CCCcEEEEEecc
Confidence 358999999999999999999999 5799998775433332211000 0000000000111222211 155555555432
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEeccc
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (503)
...+-++++.. ..-++|||+.-.. .....+.+.+.+.++-++.++
T Consensus 109 -i~~e~~~~ll~--~~~D~VIdaiD~~-~~k~~L~~~c~~~~ip~I~~g 153 (268)
T PRK15116 109 -ITPDNVAEYMS--AGFSYVIDAIDSV-RPKAALIAYCRRNKIPLVTTG 153 (268)
T ss_pred -cChhhHHHHhc--CCCCEEEEcCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 11222333331 2458999986543 344456777788888888663
No 465
>PRK07109 short chain dehydrogenase; Provisional
Probab=93.89 E-value=0.39 Score=49.19 Aligned_cols=84 Identities=14% Similarity=0.183 Sum_probs=56.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEE--EecCCC
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI--ILVKAG 83 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIi--l~vp~~ 83 (503)
++|-|.|. |.+|..+|+.|++.|++|.+.+|++++.+++.+... +. . +++.+ .=+.+.
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~--------------~~--g---~~~~~v~~Dv~d~ 69 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIR--------------AA--G---GEALAVVADVADA 69 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH--------------Hc--C---CcEEEEEecCCCH
Confidence 35777774 999999999999999999999999887666544211 00 0 22322 223444
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
..++.+++.+...+.+=+++|++...
T Consensus 70 ~~v~~~~~~~~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 70 EAVQAAADRAEEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCc
Confidence 56777777776655555788877653
No 466
>PRK06185 hypothetical protein; Provisional
Probab=93.89 E-value=0.078 Score=55.58 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=34.7
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 1 M~~~~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
|...+..+|.|||.|..|..+|..|+++|++|+++++++.
T Consensus 1 ~~~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 1 MAEVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred CCccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 4444556899999999999999999999999999998753
No 467
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.89 E-value=0.39 Score=50.59 Aligned_cols=108 Identities=15% Similarity=0.083 Sum_probs=63.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe--cCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~--vp~~~ 84 (503)
|+|.|+|+|.-|.++|+.|. .|+.|+++|..+.... +.+.+ +... . .+... ...+|+||.+ +|.+.
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~-~~~~g-------i~~~-~-~~~~~-~~~~d~vv~sp~i~~~~ 68 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESH-KDEEG-------NLLL-P-SNDFD-PNKSDLEIPSPGIPPSH 68 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccc-hhhcC-------CEEe-c-HHHcC-cCCCCEEEECCCCCCCC
Confidence 57999999999999999999 9999999996643211 11111 2332 2 22221 1238888765 44432
Q ss_pred h-H---HHHHH--HHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCc
Q 010702 85 P-V---DQTIA--ALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126 (503)
Q Consensus 85 ~-v---~~vl~--~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi 126 (503)
+ + ++++. +++..+.+..|-|..|++...++.-+...|...|.
T Consensus 69 ~~~~~a~~i~~~~e~~~~~~~~~i~ITGT~GKTTTt~ml~~iL~~~g~ 116 (401)
T PRK03815 69 PLIQKAKNLISEYDYFYDVMPFSIWISGTNGKTTTTQMTTHLLEDFGA 116 (401)
T ss_pred HHHHHHHHHhhHHHHHHHhcCCEEEEECCCcHHHHHHHHHHHHHHCCC
Confidence 2 2 22221 22222223356677777776666666777777663
No 468
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=93.87 E-value=0.09 Score=40.62 Aligned_cols=30 Identities=20% Similarity=0.522 Sum_probs=27.4
Q ss_pred EEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 11 LAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 11 IIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
|||.|.-|...|..|+++|++|.++++++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 799999999999999999999999998864
No 469
>PRK06753 hypothetical protein; Provisional
Probab=93.85 E-value=0.069 Score=55.25 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=32.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
|+|.|||.|.-|..+|..|+++|++|+++++++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 5899999999999999999999999999998875
No 470
>PRK07890 short chain dehydrogenase; Provisional
Probab=93.84 E-value=0.33 Score=47.06 Aligned_cols=86 Identities=16% Similarity=0.212 Sum_probs=56.5
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|-|.| .|.+|..+|+.|+++|++|.+.+|+++..+.+.+.... .-.. ...+..-+.+...
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--------------~~~~---~~~~~~D~~~~~~ 68 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDD--------------LGRR---ALAVPTDITDEDQ 68 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH--------------hCCc---eEEEecCCCCHHH
Confidence 4677887 59999999999999999999999998766555433110 0000 2233333444456
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
++.+++.+.+.+.+=++||++...
T Consensus 69 ~~~~~~~~~~~~g~~d~vi~~ag~ 92 (258)
T PRK07890 69 CANLVALALERFGRVDALVNNAFR 92 (258)
T ss_pred HHHHHHHHHHHcCCccEEEECCcc
Confidence 677777766655555777777643
No 471
>PRK05876 short chain dehydrogenase; Provisional
Probab=93.83 E-value=0.36 Score=47.82 Aligned_cols=90 Identities=10% Similarity=0.092 Sum_probs=56.3
Q ss_pred CCcCCCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcE--EE
Q 010702 1 MEASALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRS--VI 77 (503)
Q Consensus 1 M~~~~~~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dv--Ii 77 (503)
|.+.+.+.+-|.| .|.+|..+|..|++.|++|.+.+|+++..+++.+.... .. .++ +-
T Consensus 1 ~~~~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~----------------~~---~~~~~~~ 61 (275)
T PRK05876 1 MDGFPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRA----------------EG---FDVHGVM 61 (275)
T ss_pred CCCcCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh----------------cC---CeEEEEe
Confidence 4442233455666 79999999999999999999999998776654432100 00 222 22
Q ss_pred EecCCChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
.=+.+...++.+++++.....+=+++|++...
T Consensus 62 ~Dv~d~~~v~~~~~~~~~~~g~id~li~nAg~ 93 (275)
T PRK05876 62 CDVRHREEVTHLADEAFRLLGHVDVVFSNAGI 93 (275)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 22334456667777766655455778876543
No 472
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.83 E-value=0.95 Score=48.19 Aligned_cols=113 Identities=13% Similarity=0.139 Sum_probs=66.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhH--HHHHHHhhcccCCCCeeee-CCHHHHHhccCCCcEEEEec-
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSK--VDETLDRAHREGQLPLTGH-YTPRDFVLSIQRPRSVIILV- 80 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~--~~~l~~~~~~~g~~~i~~~-~s~~e~~~~l~~~dvIil~v- 80 (503)
++|.|||+|..|.+-+..|.+. |++|+++|..+.. .+.+.+ +. .+... .+++. +.+ +|+||.+-
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~-g~-----~~~~g~~~~~~-~~~---~d~vV~Spg 77 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPE-DV-----ELHSGGWNLEW-LLE---ADLVVTNPG 77 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhc-CC-----EEEeCCCChHH-hcc---CCEEEECCC
Confidence 5799999999999999888887 5899999976532 223322 21 12112 23333 344 89887763
Q ss_pred -CCCh-hHHHHH---------HHHHh-cCCCCCEEEecCCCChhhHHHHHHHHHhcCccEe
Q 010702 81 -KAGS-PVDQTI---------AALSE-HMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 81 -p~~~-~v~~vl---------~~l~~-~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (503)
|.+. .+.... -+++. .+....|-|..|++...++.-+...+...|....
T Consensus 78 I~~~~p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~ 138 (438)
T PRK04663 78 IALATPEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAGVKVA 138 (438)
T ss_pred CCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEE
Confidence 3322 222221 13332 2333456666777776666666777777665443
No 473
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=93.82 E-value=0.18 Score=49.85 Aligned_cols=75 Identities=19% Similarity=0.301 Sum_probs=57.7
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+++.|||-+ .+|++|+..|...++.|+++.... .++.+..++ +|+++.++--+.-
T Consensus 157 k~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T---------------------~~l~~~~k~---ADIvv~AvG~p~~ 212 (283)
T COG0190 157 KNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT---------------------KDLASITKN---ADIVVVAVGKPHF 212 (283)
T ss_pred CEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC---------------------CCHHHHhhh---CCEEEEecCCccc
Confidence 579999975 579999999999999999997542 245555565 9999999966543
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCCh
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEWY 111 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~ 111 (503)
++ .+.+.+|.+|||.+....
T Consensus 213 i~------~d~vk~gavVIDVGinrv 232 (283)
T COG0190 213 IK------ADMVKPGAVVIDVGINRV 232 (283)
T ss_pred cc------cccccCCCEEEecCCccc
Confidence 33 356789999999987643
No 474
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=93.77 E-value=0.1 Score=41.34 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=30.9
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
||.|||.|..|.-+|..|++.|.+|+++++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 588999999999999999999999999998875
No 475
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=93.76 E-value=0.37 Score=48.80 Aligned_cols=91 Identities=15% Similarity=0.125 Sum_probs=57.6
Q ss_pred CCcCCCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 1 MEASALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 1 M~~~~~~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
|.....++|-|.| .|.+|..+++.|++.|++|.+.+|+.++.+++.+.. .. . . .. ..++..=
T Consensus 1 m~~~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l--------~~-~--~---~~---~~~~~~D 63 (322)
T PRK07453 1 MSQDAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQEL--------GI-P--P---DS---YTIIHID 63 (322)
T ss_pred CCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh--------hc-c--C---Cc---eEEEEec
Confidence 4433344577777 599999999999999999999999988776655431 00 0 0 01 2233333
Q ss_pred cCCChhHHHHHHHHHhcCCCCCEEEecCC
Q 010702 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iIId~st 108 (503)
+.+...++.+++++.....+=++||++..
T Consensus 64 l~~~~~v~~~~~~~~~~~~~iD~li~nAg 92 (322)
T PRK07453 64 LGDLDSVRRFVDDFRALGKPLDALVCNAA 92 (322)
T ss_pred CCCHHHHHHHHHHHHHhCCCccEEEECCc
Confidence 44545666677665544333477777654
No 476
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.76 E-value=0.22 Score=49.88 Aligned_cols=74 Identities=16% Similarity=0.283 Sum_probs=55.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhC----CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEK----GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~----G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
++|.||| ...+|.++|..|.++ +..|+++... +.++++.+++ +|+||.++.
T Consensus 162 k~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~---------------------T~~l~~~~~~---ADIvVsAvG 217 (297)
T PRK14168 162 AEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR---------------------SKNLARHCQR---ADILIVAAG 217 (297)
T ss_pred CEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC---------------------CcCHHHHHhh---CCEEEEecC
Confidence 5799999 478999999999988 6789887532 1245566666 999999996
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
-+.-+. ...+++|.+|||.+...
T Consensus 218 kp~~i~------~~~ik~gavVIDvGin~ 240 (297)
T PRK14168 218 VPNLVK------PEWIKPGATVIDVGVNR 240 (297)
T ss_pred CcCccC------HHHcCCCCEEEecCCCc
Confidence 653222 13478999999998654
No 477
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=93.70 E-value=1 Score=43.02 Aligned_cols=79 Identities=11% Similarity=0.150 Sum_probs=52.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh-hHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT-SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~-~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||.|..|..=++.|++.|-+|+++..+. +....+...+... -+...-.++++. .+++||.++++. .
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~---~~~~~~~~~~~~----~~~lviaAt~d~-~ 84 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIK---WIEREFDAEDLD----DAFLVIAATDDE-E 84 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcc---hhhcccChhhhc----CceEEEEeCCCH-H
Confidence 579999999999999999999999999997766 4455555443210 011112233332 389999999885 5
Q ss_pred HHHHHHHH
Q 010702 86 VDQTIAAL 93 (503)
Q Consensus 86 v~~vl~~l 93 (503)
+.+-+...
T Consensus 85 ln~~i~~~ 92 (210)
T COG1648 85 LNERIAKA 92 (210)
T ss_pred HHHHHHHH
Confidence 55544333
No 478
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=93.70 E-value=0.23 Score=51.68 Aligned_cols=123 Identities=14% Similarity=0.142 Sum_probs=68.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc-cCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.+|.|||+|.+|..++.+|+..|. +++++|.+.=....+..+-.. ....+..-+....+.+..+ .+++-|...+..-
T Consensus 42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~-np~v~i~~~~~~i 120 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEI-QPDIRVNALRERL 120 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHH-CCCCeeEEeeeec
Confidence 589999999999999999999996 799999885433333221100 0000000111122222222 1455555555421
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
..+.+.++ +..-++|||++-.. ..-..+.+.+...++-++.+.+.|
T Consensus 121 -~~~~~~~~---~~~~DlVid~~Dn~-~~r~~in~~~~~~~iP~v~~~~~g 166 (370)
T PRK05600 121 -TAENAVEL---LNGVDLVLDGSDSF-ATKFLVADAAEITGTPLVWGTVLR 166 (370)
T ss_pred -CHHHHHHH---HhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEEec
Confidence 12223333 34458999987653 333334455666787777665543
No 479
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.68 E-value=0.23 Score=49.67 Aligned_cols=74 Identities=16% Similarity=0.257 Sum_probs=55.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhC----CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEK----GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~----G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
++|.|||- ..+|.++|..|.++ +..|+++.... .++.+...+ +|+||.++.
T Consensus 158 K~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T---------------------~nl~~~~~~---ADIvIsAvG 213 (293)
T PRK14185 158 KKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS---------------------KNLKKECLE---ADIIIAALG 213 (293)
T ss_pred CEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC---------------------CCHHHHHhh---CCEEEEccC
Confidence 57999995 78999999999988 46788875321 245566666 999999998
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
-+.-+. ...+++|.+|||.+...
T Consensus 214 kp~~i~------~~~vk~gavVIDvGin~ 236 (293)
T PRK14185 214 QPEFVK------ADMVKEGAVVIDVGTTR 236 (293)
T ss_pred CcCccC------HHHcCCCCEEEEecCcc
Confidence 764322 23578999999998754
No 480
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=93.66 E-value=0.3 Score=48.47 Aligned_cols=99 Identities=13% Similarity=0.206 Sum_probs=53.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHh-----hcccCCCCeee-eCCHHHHHhccCCCcEEEE
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDR-----AHREGQLPLTG-HYTPRDFVLSIQRPRSVII 78 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~-----~~~~g~~~i~~-~~s~~e~~~~l~~~dvIil 78 (503)
.+|.+||.|.+-.+.-.....+ |..|..+|++++..+...+. +... ++.. +.+..++..++...|+|++
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~---~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSK---RMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-S---SEEEEES-GGGG-GG----SEEEE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccC---CeEEEecchhccccccccCCEEEE
Confidence 4899999999987655444444 45688999999876544321 1111 2333 3344444455666999999
Q ss_pred ecCCC---hhHHHHHHHHHhcCCCCCEEEecCC
Q 010702 79 LVKAG---SPVDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 79 ~vp~~---~~v~~vl~~l~~~l~~g~iIId~st 108 (503)
+.-.+ ..=.++++.+...+++|..|+--+.
T Consensus 199 AalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 199 AALVGMDAEPKEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp -TT-S----SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred hhhcccccchHHHHHHHHHhhCCCCcEEEEecc
Confidence 87654 2346788999999999998887643
No 481
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=93.64 E-value=0.081 Score=55.34 Aligned_cols=34 Identities=21% Similarity=0.423 Sum_probs=31.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCCh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTT 39 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~--G~~V~v~dr~~ 39 (503)
+.+|.|||.|.+|.++|..|++. |++|+++|+.+
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 46899999999999999999998 99999999875
No 482
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=93.62 E-value=0.71 Score=39.33 Aligned_cols=99 Identities=12% Similarity=0.208 Sum_probs=66.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEE-EEecCCC-
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSV-IILVKAG- 83 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvI-il~vp~~- 83 (503)
.+||-|+|-|.++..+.+.+.+.|+++.+.+.+++..... .+. +|-+ ++. +..
T Consensus 2 ikkvLIanrGeia~r~~ra~r~~Gi~tv~v~s~~d~~s~~------------------~~~------ad~~~~~~-~~~~ 56 (110)
T PF00289_consen 2 IKKVLIANRGEIAVRIIRALRELGIETVAVNSNPDTVSTH------------------VDM------ADEAYFEP-PGPS 56 (110)
T ss_dssp SSEEEESS-HHHHHHHHHHHHHTTSEEEEEEEGGGTTGHH------------------HHH------SSEEEEEE-SSSG
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCcceeccCchhccccc------------------ccc------cccceecC-cchh
Confidence 4689999999999999999999999988777676542111 111 4444 333 221
Q ss_pred ----hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEeccc
Q 010702 84 ----SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (503)
Q Consensus 84 ----~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (503)
..++.+++-... .|...+..+-+......++++.+.+.|+.|++.+
T Consensus 57 ~~~yl~~e~I~~ia~~---~g~~~i~pGyg~lse~~~fa~~~~~~gi~fiGp~ 106 (110)
T PF00289_consen 57 PESYLNIEAIIDIARK---EGADAIHPGYGFLSENAEFAEACEDAGIIFIGPS 106 (110)
T ss_dssp GGTTTSHHHHHHHHHH---TTESEEESTSSTTTTHHHHHHHHHHTT-EESSS-
T ss_pred hhhhccHHHHhhHhhh---hcCcccccccchhHHHHHHHHHHHHCCCEEECcC
Confidence 235555544433 3666777888888888899999999999998753
No 483
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=93.60 E-value=0.41 Score=46.20 Aligned_cols=88 Identities=16% Similarity=0.165 Sum_probs=53.1
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCCCcEEEE-eCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 5 ALSRIGLAGL-AVMGQNLALNVAEKGFPISVY-NRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 5 ~~~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~-dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
|+++|-|.|. |.+|..+|+.|+++|++|.+. .|++++.+.+.+... +.-.. ...+..-+.+
T Consensus 1 m~k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~--------------~~~~~---~~~~~~Dl~~ 63 (248)
T PRK06947 1 MRKVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVR--------------AAGGR---ACVVAGDVAN 63 (248)
T ss_pred CCcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHH--------------hcCCc---EEEEEeccCC
Confidence 3457888874 889999999999999998765 566665544433210 00001 2223333344
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
...++++++++.+.+.+=++||.+...
T Consensus 64 ~~~~~~~~~~~~~~~~~id~li~~ag~ 90 (248)
T PRK06947 64 EADVIAMFDAVQSAFGRLDALVNNAGI 90 (248)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCcc
Confidence 455666666666555455677776653
No 484
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=93.57 E-value=0.16 Score=50.87 Aligned_cols=120 Identities=8% Similarity=0.098 Sum_probs=67.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhccc-CCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHRE-GQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~-g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
..+|.|+|+|-+|..+|++|+..|. +|+++|.+.-....+..+-.-. ...+-..+....+.++++. +++-|......
T Consensus 19 ~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLN-p~V~V~~~~~~ 97 (286)
T cd01491 19 KSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELN-PYVPVTVSTGP 97 (286)
T ss_pred cCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHC-CCCEEEEEecc
Confidence 3589999999999999999999997 6999998764444433211000 0000000111112222221 45555554432
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
... +. +.+=++||++.. .+.....+.+.+.++++.|+.+...|
T Consensus 98 -~~~----~~---l~~fdvVV~~~~-~~~~~~~in~~c~~~~ipfI~a~~~G 140 (286)
T cd01491 98 -LTT----DE---LLKFQVVVLTDA-SLEDQLKINEFCHSPGIKFISADTRG 140 (286)
T ss_pred -CCH----HH---HhcCCEEEEecC-CHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 111 12 223467887754 45555567777788888888775543
No 485
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.55 E-value=0.42 Score=46.36 Aligned_cols=126 Identities=13% Similarity=0.110 Sum_probs=69.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc-cCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
..+|.|+|+|.+|+.++.+|++.|. +++++|.+.=....+..+... ....+-.-+....+-+.++ .+++-+...+..
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~i-nP~~~V~~~~~~ 89 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDI-NPECEVDAVEEF 89 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHH-CCCcEEEEeeee
Confidence 3589999999999999999999997 789998775333333221100 0000000011112222222 155555555432
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg 136 (503)
...+.+..+.. ..-++|||+.-.. .....+.+.+.+.++.++.+.-.|+
T Consensus 90 -i~~~~~~~l~~--~~~D~VvdaiD~~-~~k~~L~~~c~~~~ip~I~s~g~g~ 138 (231)
T cd00755 90 -LTPDNSEDLLG--GDPDFVVDAIDSI-RAKVALIAYCRKRKIPVISSMGAGG 138 (231)
T ss_pred -cCHhHHHHHhc--CCCCEEEEcCCCH-HHHHHHHHHHHHhCCCEEEEeCCcC
Confidence 11222333331 2358999986543 3444567777788888887644443
No 486
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=93.54 E-value=0.078 Score=53.73 Aligned_cols=34 Identities=21% Similarity=0.407 Sum_probs=29.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
.+|.|||.|.-|..+|..|+++|++|.++++++.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 3699999999999999999999999999999875
No 487
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=93.50 E-value=0.41 Score=49.81 Aligned_cols=114 Identities=16% Similarity=0.204 Sum_probs=66.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh--------HHHHHHHhhcccC----CCCeeeeCCHHHHHhccCCCc
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS--------KVDETLDRAHREG----QLPLTGHYTPRDFVLSIQRPR 74 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~--------~~~~l~~~~~~~g----~~~i~~~~s~~e~~~~l~~~d 74 (503)
++|+|=|.|++|..+|+.|.+.|.+|.+.+-+.. ..+.+.+.....+ ..+.+..+. +++... +||
T Consensus 208 ~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~-~e~~~~--~cD 284 (411)
T COG0334 208 ARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITN-EELLEV--DCD 284 (411)
T ss_pred CEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccc-cccccc--cCc
Confidence 5899999999999999999999999988876655 1111111000000 001222222 444331 388
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 75 SVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 75 vIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
+.+=|--.+.-..+.+..|. . ++|+...|.. .+.+..+.+.++|+-|+.
T Consensus 285 Il~PcA~~n~I~~~na~~l~----a-k~V~EgAN~P--~t~eA~~i~~erGIl~~P 333 (411)
T COG0334 285 ILIPCALENVITEDNADQLK----A-KIVVEGANGP--TTPEADEILLERGILVVP 333 (411)
T ss_pred EEcccccccccchhhHHHhh----h-cEEEeccCCC--CCHHHHHHHHHCCCEEcC
Confidence 87766544432223333332 2 3888887764 445566667788987764
No 488
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=93.50 E-value=0.66 Score=44.93 Aligned_cols=93 Identities=17% Similarity=0.145 Sum_probs=59.6
Q ss_pred EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCC--
Q 010702 32 ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNE-- 109 (503)
Q Consensus 32 V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~-- 109 (503)
|.+||+++++.+++.+.. ++..+++++++++. ++|.|++|.|+.. ..+..... |..|.-|+-.+..
T Consensus 5 vaV~D~~~e~a~~~a~~~------g~~~~~d~~eLl~~--~vDaVviatp~~~-H~e~a~~a---L~aGkhVl~~s~gAl 72 (229)
T TIGR03855 5 AAVYDRNPKDAKELAERC------GAKIVSDFDEFLPE--DVDIVVEAASQEA-VKEYAEKI---LKNGKDLLIMSVGAL 72 (229)
T ss_pred EEEECCCHHHHHHHHHHh------CCceECCHHHHhcC--CCCEEEECCChHH-HHHHHHHH---HHCCCCEEEECCccc
Confidence 568999999998887753 24578899998752 4999999999964 34444443 3355444445554
Q ss_pred -ChhhHHHHHHHHHhcCccE-ecccCCCC
Q 010702 110 -WYLNTERRIHEASQKGLLY-LGMGVSGG 136 (503)
Q Consensus 110 -~~~~t~~~~~~l~~~gi~~-i~~pvsgg 136 (503)
.....+++.+..++.|..+ +..+-.+|
T Consensus 73 ad~e~~~~l~~aA~~~g~~l~i~sGai~g 101 (229)
T TIGR03855 73 ADRELRERLREVARSSGRKVYIPSGAIGG 101 (229)
T ss_pred CCHHHHHHHHHHHHhcCCEEEEChHHHHH
Confidence 3345666666677766544 44333333
No 489
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=93.46 E-value=0.12 Score=52.01 Aligned_cols=71 Identities=15% Similarity=0.193 Sum_probs=45.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee-eCCHHHHHhccCCCcEEEEecC
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG-HYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~-~~s~~e~~~~l~~~dvIil~vp 81 (503)
|+|.|.| .|.+|..++..|+++|++|.+.+|+++....+...+.. -+.. ..+.+++.+.++.+|+||-+..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~----~~~~D~~~~~~l~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVE----IVEGDLRDPASLRKAVAGCRALFHVAA 73 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCce----EEEeeCCCHHHHHHHHhCCCEEEEece
Confidence 4789998 59999999999999999999999987654333211110 0111 1233333333344788877653
No 490
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=93.46 E-value=1.9 Score=43.86 Aligned_cols=42 Identities=26% Similarity=0.530 Sum_probs=33.7
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CCCcEE-EEeCChhHHHHHHHh
Q 010702 7 SRIGLAGLAVMGQNLALNVAE-KGFPIS-VYNRTTSKVDETLDR 48 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~-~G~~V~-v~dr~~~~~~~l~~~ 48 (503)
-|||+||+|.||+.|+...++ .|++|. +.||+.+.+.+..+.
T Consensus 18 iRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ 61 (438)
T COG4091 18 IRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDR 61 (438)
T ss_pred eEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHH
Confidence 489999999999999887775 588866 569998887766553
No 491
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=93.43 E-value=0.45 Score=49.10 Aligned_cols=94 Identities=14% Similarity=0.169 Sum_probs=56.1
Q ss_pred cEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeC---CHHHHHhcc---CCCcEEEEec
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHY---TPRDFVLSI---QRPRSVIILV 80 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~---s~~e~~~~l---~~~dvIil~v 80 (503)
++.|+|+|.+|...++.+...|. +|.+.|+++++++...+.+... ..... ...+.+..+ ..+|++|.|+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~----~~~~~~~~~~~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD----VVVNPSEDDAGAEILELTGGRGADVVIEAV 246 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe----EeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence 69999999999998888888885 6778899999988766533211 11111 111111111 1378888887
Q ss_pred CCChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
.... .+...+..++++-.|+-.+..
T Consensus 247 G~~~----~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 247 GSPP----ALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred CCHH----HHHHHHHHhcCCCEEEEEecc
Confidence 6432 334444445555555444443
No 492
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=93.40 E-value=0.45 Score=46.33 Aligned_cols=86 Identities=12% Similarity=0.179 Sum_probs=55.8
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|-|.| .|.+|..+|+.|+++|++|++.+|++++.+.+.+... ..-.. ..++-.-+.+...
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~--------------~~~~~---~~~~~~Dl~d~~~ 75 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLE--------------ALGID---ALWIAADVADEAD 75 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH--------------hcCCe---EEEEEccCCCHHH
Confidence 4688887 5999999999999999999999999877655443210 00000 2222233444456
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
++..++++.....+=+.||++...
T Consensus 76 i~~~~~~~~~~~~~id~vi~~ag~ 99 (259)
T PRK08213 76 IERLAEETLERFGHVDILVNNAGA 99 (259)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCC
Confidence 666666666655455777777653
No 493
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=93.39 E-value=0.43 Score=46.08 Aligned_cols=85 Identities=16% Similarity=0.154 Sum_probs=54.7
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|-|.| .|.+|..+++.|+++|++|.+.+|+++..+.+.+.... .-.. ..++..=+.+...
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~--------------~~~~---~~~~~~D~~~~~~ 64 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATD--------------AGGS---VIYLVADVTKEDE 64 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--------------cCCc---eEEEECCCCCHHH
Confidence 3577887 69999999999999999999999998776665543110 0000 1222222344445
Q ss_pred HHHHHHHHHhcCCCCCEEEecCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st 108 (503)
++.+++.+.+.+.+=++||.+..
T Consensus 65 ~~~~~~~~~~~~~~~d~vi~~a~ 87 (255)
T TIGR01963 65 IADMIAAAAAEFGGLDILVNNAG 87 (255)
T ss_pred HHHHHHHHHHhcCCCCEEEECCC
Confidence 66666676665555567776654
No 494
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=93.38 E-value=0.53 Score=46.67 Aligned_cols=43 Identities=16% Similarity=0.263 Sum_probs=35.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCc-EEEEeCChhHHHHHHHhh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTTSKVDETLDRA 49 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~-V~v~dr~~~~~~~l~~~~ 49 (503)
.+|.|+|.|.+|...++.+...|.+ |.+.++++++.+.+.+.+
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~G 165 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFG 165 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcC
Confidence 3699999999999999988889987 888899988876655543
No 495
>PRK05872 short chain dehydrogenase; Provisional
Probab=93.37 E-value=0.76 Score=45.98 Aligned_cols=83 Identities=11% Similarity=0.129 Sum_probs=56.2
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEE--EecCCC
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI--ILVKAG 83 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIi--l~vp~~ 83 (503)
++|-|.| .|.+|..+|+.|+++|++|.+.+|++++.+++.+... .. .+++. .=+.+.
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~-----------------~~---~~~~~~~~Dv~d~ 69 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELG-----------------GD---DRVLTVVADVTDL 69 (296)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc-----------------CC---CcEEEEEecCCCH
Confidence 3577777 5999999999999999999999999887766654310 00 22222 334454
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
..++++++++...+.+=+++|++...
T Consensus 70 ~~v~~~~~~~~~~~g~id~vI~nAG~ 95 (296)
T PRK05872 70 AAMQAAAEEAVERFGGIDVVVANAGI 95 (296)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 56777777776655444777776543
No 496
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=93.36 E-value=0.15 Score=53.01 Aligned_cols=36 Identities=28% Similarity=0.492 Sum_probs=32.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK 41 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~ 41 (503)
|++|||||.|..|..|+....+.|++|.++|.+++.
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~ 37 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDS 37 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 468999999999999999999999999999988654
No 497
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.34 E-value=0.5 Score=45.20 Aligned_cols=41 Identities=15% Similarity=0.350 Sum_probs=35.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 47 (503)
++|-|.|. |.+|..+++.|++.|++|.+.+|++++.+.+.+
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKK 47 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 47888875 889999999999999999999999887766543
No 498
>PRK06172 short chain dehydrogenase; Provisional
Probab=93.33 E-value=0.57 Score=45.35 Aligned_cols=41 Identities=27% Similarity=0.305 Sum_probs=34.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 47 (503)
++|-|.|. |.+|..+|..|++.|++|.+.+|+++..+++.+
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~ 49 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVA 49 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 46788875 899999999999999999999999887665543
No 499
>PRK05867 short chain dehydrogenase; Provisional
Probab=93.28 E-value=0.49 Score=45.90 Aligned_cols=41 Identities=22% Similarity=0.381 Sum_probs=34.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 47 (503)
+.+-|.|. |.+|..+++.|++.|++|.+.+|++++.+++.+
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 51 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLAD 51 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 34667775 899999999999999999999999887766554
No 500
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=93.26 E-value=0.37 Score=48.89 Aligned_cols=123 Identities=15% Similarity=0.186 Sum_probs=67.5
Q ss_pred cEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc-cCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
||.|||+|.+|..++++|+..|. +++++|.+.-....+..+-.- ....+-.-+....+.+..+. +++-+.+....
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lN-p~v~V~~~~~~-- 77 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFN-PNVKIVAYHAN-- 77 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHC-CCCeEEEEecc--
Confidence 68999999999999999999997 689999876544444322100 00000000111122222221 44445444332
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
+.+. ......+..=++||++.-. +..-..+.+.+...++-|++++..|
T Consensus 78 i~~~-~~~~~f~~~~DvVv~a~Dn-~~ar~~in~~c~~~~ip~I~~gt~G 125 (312)
T cd01489 78 IKDP-DFNVEFFKQFDLVFNALDN-LAARRHVNKMCLAADVPLIESGTTG 125 (312)
T ss_pred CCCc-cchHHHHhcCCEEEECCCC-HHHHHHHHHHHHHCCCCEEEEecCc
Confidence 1110 0011223455788887643 3333345667777888899887655
Done!