Query 010706
Match_columns 503
No_of_seqs 162 out of 249
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 03:38:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010706.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010706hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03094 Mlo: Mlo family; Int 100.0 3E-165 7E-170 1290.9 28.4 385 1-401 53-443 (478)
2 PF12129 Phtf-FEM1B_bdg: Male 33.6 32 0.00069 33.3 2.4 19 251-269 129-147 (159)
3 PF15468 DUF4636: Domain of un 31.2 23 0.00049 36.0 1.0 29 208-239 25-53 (243)
4 KOG1899 LAR transmembrane tyro 30.9 96 0.0021 36.1 5.8 97 363-471 281-377 (861)
5 PF05879 RHD3: Root hair defec 21.6 1E+02 0.0022 36.1 4.0 34 227-264 649-686 (742)
6 COG3114 CcmD Heme exporter pro 19.4 2.3E+02 0.005 24.0 4.6 37 238-275 9-55 (67)
7 PF15444 TMEM247: Transmembran 18.8 1.3E+02 0.0028 30.1 3.5 23 99-121 193-215 (218)
8 PF09878 DUF2105: Predicted me 18.0 72 0.0016 32.1 1.6 47 217-268 158-207 (212)
9 PF13198 DUF4014: Protein of u 17.6 2.2E+02 0.0048 24.4 4.2 31 231-270 19-49 (72)
10 TIGR01106 ATPase-IIC_X-K sodiu 16.7 4.9E+02 0.011 31.4 8.3 38 294-331 816-853 (997)
No 1
>PF03094 Mlo: Mlo family; InterPro: IPR004326 The Mlo-related proteins are a family of plant integral membrane proteins, first discovered in barley. Mutants lacking wild-type Mlo proteins show broad spectrum resistance to the powdery mildew fungus, and dysregulated cell death control, with spontaneous cell death in response to developmental or abiotic stimuli. Thus wild-type Mlo proteins are thought to be inhibitors of cell death whose deficiency lowers the threshold required to trigger the cascade of events that result in plant cell death. Mlo proteins are localized in the plasma membrane and possess seven transmembrane regions; thus the Mlo family is the only major higher plant family to possess 7 transmembrane domains. It has been suggested that Mlo proteins function as G-protein coupled receptors in plants []; however the molecular and biological functions of Mlo proteins is still unclear.; GO: 0008219 cell death, 0016021 integral to membrane
Probab=100.00 E-value=3e-165 Score=1290.94 Aligned_cols=385 Identities=52% Similarity=0.977 Sum_probs=363.0
Q ss_pred CchhhhhHHHHHHHHHhccccccccccccCCCCCccccCCCCccchhhhcCcccchhhhcccCCcccchhhcc---cccC
Q 010706 1 MKEEMMLLGFISLFLTATSSSISNICIPSKFYDSTFAPCTRSEIDEEMENNSSEGRKLMGLLFPHRYRRVLNE---LNKN 77 (503)
Q Consensus 1 iKeELMLLGFISLLLTv~Q~~IskICIp~s~~~~~mlPC~~~~~~~~~~~~~~~~~~~~~s~~~~~~RR~L~~---~~~~ 77 (503)
||||||||||||||||++|++|+|||||++ ++++|+||+.++..++.++ ....||+|+. .+.+
T Consensus 53 ik~ELMlLGfiSLlLt~~q~~IskICIp~~-~~~~~lPC~~~~~~~~~~~-------------~~~~r~ll~~~~~~~~~ 118 (478)
T PF03094_consen 53 IKEELMLLGFISLLLTVFQNPISKICIPSS-YASTMLPCKPPEESSKEGS-------------SHNRRRLLASGAAEGSD 118 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhHeecChh-HHhcccCCCCccccccccc-------------chhhhhhhhhhcccccC
Confidence 699999999999999999999999999999 5789999986443221110 1256777763 4677
Q ss_pred cCC-CCccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhccccccccccceeEEeeccchhh
Q 010706 78 TCK-EGYEPFVSYEGLEQLHRFIFVMAVTHISYSCLTMLLAIVKIHSWRVWEEEAHMDRHDSLTEITRELTIRRQTTFVR 156 (503)
Q Consensus 78 ~C~-~GkvPlvS~egLHQLHIFIFVLAV~HV~Ys~lTm~Lg~~Kir~Wk~WE~e~~~~~~~~~~~~~~r~~~~rqttFvr 156 (503)
+|+ ||||||+|+|||||||||||||||+||+|||+||+||++|||+||+||+|+++++|+ ..+||+|++++||++|+|
T Consensus 119 ~C~~kGkvpliS~egLHQLHIFIFVLAV~HV~Ys~lTm~Lg~~KIr~Wk~WE~e~~~~~~~-~~~d~~r~~~~~qt~F~r 197 (478)
T PF03094_consen 119 YCPKKGKVPLISAEGLHQLHIFIFVLAVVHVLYSCLTMLLGRAKIRRWKKWEDEAQTDEYQ-FSNDPRRFRLTRQTTFVR 197 (478)
T ss_pred cccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-cccCcceeeeecccHHHH
Confidence 996 599999999999999999999999999999999999999999999999999999888 456899999999999999
Q ss_pred hcccCCCCCChhHHHHHHHHhhhCCCcchhhHHHHHHhhhhhcCCC-CCCChHHHHHHHHHHhhccccccchhHHHHHHH
Q 010706 157 YHTSNPLSRNKLLIWVTCFFRQFGRSVVRADYLTLRKGFIMNHNLS-PKYDFHSYMIRSMEEEFQRIVGVSGPLWGFVVA 235 (503)
Q Consensus 157 ~h~s~~ws~~~~l~Wi~cFfRQF~~SV~KsDYltLR~GFI~~H~~~-~kFDFhkYi~RsLEdDFk~VVGIS~~LW~fvvi 235 (503)
+|+ ++|++++++.|++|||||||+||+|+||+|||+|||++|+++ ++|||||||+||||||||+||||||+||+|||+
T Consensus 198 ~h~-~~w~~~~~~~wi~~FfrQF~~SV~k~DYltLR~gFI~~H~~~~~~FDFh~Yi~RsLEdDFk~VVGIS~~lW~~vv~ 276 (478)
T PF03094_consen 198 RHT-SFWSKSPVLSWIVCFFRQFYGSVTKSDYLTLRHGFITAHLLPNPKFDFHKYIKRSLEDDFKVVVGISWYLWAFVVL 276 (478)
T ss_pred hhc-CCcccChhHHhHHHHHHHhhccccHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHheeccccHhhhhhe
Confidence 999 789999999999999999999999999999999999999885 999999999999999999999999999999999
Q ss_pred HHhhccCCcchhhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhcccCcccCc-ccccCCCccccCcchHHHHHHHHHHhhh
Q 010706 236 FMLFNVKGSNLYFWIAIIPVTLVLLVGSKLQHVIATLALENAGITGYFAGA-KLKPRDELFWFNKPELMLSLIHFILFQN 314 (503)
Q Consensus 236 FlLlNv~Gw~~yfWlsfiPlilvLlVGtKLq~IIt~LAlei~e~~~~~~g~-~vkPsD~lFWF~rP~llL~LIHfiLFQN 314 (503)
|||+|++|||+|||++|||++++|+||||||+||++||+|++|++++++|. +|||+|++|||+||+|||+|||||||||
T Consensus 277 fll~nv~gw~~yfW~sfipl~liL~VGtKLq~Ii~~ma~ei~~~~~~~~g~p~v~p~d~~FWF~rP~llL~lihfilFqn 356 (478)
T PF03094_consen 277 FLLLNVHGWHTYFWLSFIPLILILLVGTKLQHIITKMALEIAERHAVIKGTPLVKPSDDLFWFGRPRLLLHLIHFILFQN 356 (478)
T ss_pred eeeecCCcceeEeehhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccCcccccccccceecCCcHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999995 7999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhCCCccccccccceeeeeeeecccccccccccchhhhHhhhhcccccccccchhHHHHHHhHHHHHh
Q 010706 315 AFELASFFWFWWQFGYNSCFIHNHLLVYLRLILGFAGQFLCSYSTLPLYALVTQMGTNYKAALIPRRIRETIHGWGKAAR 394 (503)
Q Consensus 315 AFElAfF~W~~~~fG~~SCf~~~~~~ii~Rl~~Gv~vQvlCSY~TLPLYALVTQMGS~~K~~if~e~v~~~L~~W~~~ak 394 (503)
|||||||+|+||+||++||||++.+++++|+++|+++|++|||+|||||||||||||+||++||+|+|+++|++||++||
T Consensus 357 AFela~f~w~~~~~g~~sC~~~~~~~~i~rl~~gv~vq~lcsy~tLPLYaLVTqMGS~~K~~if~e~v~~al~~W~~~ak 436 (478)
T PF03094_consen 357 AFELAFFFWIWWQFGFDSCFMENTEYIIIRLVMGVVVQVLCSYVTLPLYALVTQMGSHMKKAIFNEQVSKALKKWHKKAK 436 (478)
T ss_pred HHHHHHHHHHHhcCCCceeEecCccceeeehhhhhhhhhhcchhhhhHHHHHhccccccchhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCC
Q 010706 395 RKRRLGH 401 (503)
Q Consensus 395 kk~~~~~ 401 (503)
||+|+++
T Consensus 437 ~~~~~~~ 443 (478)
T PF03094_consen 437 KKKKHKK 443 (478)
T ss_pred HhhccCC
Confidence 9987665
No 2
>PF12129 Phtf-FEM1B_bdg: Male germ-cell putative homeodomain transcription factor; InterPro: IPR021980 This domain is found in bacteria and eukaryotes, and is typically between 101 and 140 amino acids in length. Phtf proteins do not display any sequence similarity to known or predicted proteins, but their conservation among species suggests an essential function. The 84 kDa Phtf1 protein is an integral membrane protein, anchored to a cell membrane by six to eight trans-membrane domains, that is associated with a domain of the endoplasmic reticulum (ER) juxtaposed to the Golgi apparatus. It is present during meiosis and spermiogenesis, and, by the end of spermiogenesis, is released from the mature spermatozoon within the residual bodies []. Phtf1 enhances the binding of FEM1B -feminisation homologue 1B - to cell membranes. Fem-1 was initially identified in the signaling pathway for sex determination, as well as being implicated in apoptosis, but its biochemical role is still unclear, and neither FEM1B nor PHTF1 is directly implicated in apoptosis in spermatogenesis. It is the ANK domain of FEM1B that is necessary for the interaction with the N-terminal region of Phtf1 [].
Probab=33.64 E-value=32 Score=33.25 Aligned_cols=19 Identities=26% Similarity=0.557 Sum_probs=14.3
Q ss_pred hhHHHHHHHhhhhHHHHHH
Q 010706 251 AIIPVTLVLLVGSKLQHVI 269 (503)
Q Consensus 251 sfiPlilvLlVGtKLq~II 269 (503)
-++|+.|+|++||==-+|+
T Consensus 129 v~~Pi~LmLlLg~VH~QIV 147 (159)
T PF12129_consen 129 VFGPICLMLLLGTVHCQIV 147 (159)
T ss_pred HHHHHHHHHHHHHhhheee
Confidence 5899999999998433443
No 3
>PF15468 DUF4636: Domain of unknown function (DUF4636)
Probab=31.21 E-value=23 Score=35.97 Aligned_cols=29 Identities=31% Similarity=0.589 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHhh
Q 010706 208 HSYMIRSMEEEFQRIVGVSGPLWGFVVAFMLF 239 (503)
Q Consensus 208 hkYi~RsLEdDFk~VVGIS~~LW~fvviFlLl 239 (503)
+.|=-| +||+-.++| +..||-||+|++|.
T Consensus 25 qdyEc~--KDdsc~~iG-~fLlWyfviilvLm 53 (243)
T PF15468_consen 25 QDYECR--KDDSCGAIG-SFLLWYFVIILVLM 53 (243)
T ss_pred cchhhc--cCCccchhh-hHHHHHHHHHHHHH
Confidence 444444 899988888 78999999887654
No 4
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=30.88 E-value=96 Score=36.12 Aligned_cols=97 Identities=22% Similarity=0.197 Sum_probs=55.8
Q ss_pred hhHhhhhcccccccccchhHHHHHHhHHHHHhhhhccCCCCCCCccccccCCCcccccccccccccCCCccccCCCCCCc
Q 010706 363 YALVTQMGTNYKAALIPRRIRETIHGWGKAARRKRRLGHFTDDSTIHTVTDASTVASLEEYDHQLIDIPETAIGAGNSTG 442 (503)
Q Consensus 363 YALVTQMGS~~K~~if~e~v~~~L~~W~~~akkk~~~~~~~~~~~~~~~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 442 (503)
.|+-+||-++=.|.=|-|..+.-+.+..+.+.-.+=....+.++.-+. +.-++.++.+++|.-- |+- .
T Consensus 281 ~a~eslm~ane~kdr~ie~lr~~ln~y~k~~~iv~i~qg~~~~~~s~~--e~~p~s~~S~~n~~~g--p~~--------~ 348 (861)
T KOG1899|consen 281 NALESLMRANEQKDRFIESLRNYLNNYDKNAQIVRILQGEPSDSMSHS--ESFPVSSSSTTNNGKG--PRS--------T 348 (861)
T ss_pred HHHHHHHhhchhhhhHHHHHHHHhhhhhhhhhhhhhhcCCCccccccc--ccccccccccccccCC--ccc--------c
Confidence 577789998888888888888888887766554432222222222222 3345555555543221 111 1
Q ss_pred ceEeeecccCCCCCCCCCCCCCCccCccc
Q 010706 443 AEVELQPRNISNSPASVPNETSSRVGTPL 471 (503)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (503)
.+-+-.|.+++|.+.|.++-+|++.|++=
T Consensus 349 ~~~s~~p~~ssp~v~P~~~~~S~slg~lr 377 (861)
T KOG1899|consen 349 VQSSSSPNMSSPAVSPQHNWSSASLGTLR 377 (861)
T ss_pred ccCCCCCcCCCCCCCCccccccccccchh
Confidence 11122345577777788888888888753
No 5
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=21.55 E-value=1e+02 Score=36.07 Aligned_cols=34 Identities=26% Similarity=0.431 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHhhccCCcchhhhhhhHHH----HHHHhhhhH
Q 010706 227 GPLWGFVVAFMLFNVKGSNLYFWIAIIPV----TLVLLVGSK 264 (503)
Q Consensus 227 ~~LW~fvviFlLlNv~Gw~~yfWlsfiPl----ilvLlVGtK 264 (503)
+|+|+++++.+| ||+=..++-.-|+ ++++++|++
T Consensus 649 iP~w~~~ll~vL----GwNE~m~vLrnPl~~~l~li~~~~~~ 686 (742)
T PF05879_consen 649 IPPWMYLLLLVL----GWNEFMAVLRNPLYFTLLLILGGGFY 686 (742)
T ss_pred CCHHHHHHHHHH----hHHHHHHHHHChHHHHHHHHHHHHHH
Confidence 688988888766 8998888855555 344444443
No 6
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=19.41 E-value=2.3e+02 Score=23.97 Aligned_cols=37 Identities=32% Similarity=0.668 Sum_probs=21.2
Q ss_pred hhccCCcchhhhhh----hHHHHHHHhhhhHH------HHHHHHHHHH
Q 010706 238 LFNVKGSNLYFWIA----IIPVTLVLLVGSKL------QHVIATLALE 275 (503)
Q Consensus 238 LlNv~Gw~~yfWls----fiPlilvLlVGtKL------q~IIt~LAle 275 (503)
++|..|...|-|++ .+|+++++ |-+-+ +.|.-++|-|
T Consensus 9 FfaMGgyafyVWlA~~~tll~l~~l~-v~sv~qrr~iL~~v~r~~aRe 55 (67)
T COG3114 9 FFAMGGYAFYVWLAVGMTLLPLAVLV-VHSVLQRRAILRGVARQRARE 55 (67)
T ss_pred HHHccCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 36777888888874 45665444 43333 4444445444
No 7
>PF15444 TMEM247: Transmembrane protein 247
Probab=18.80 E-value=1.3e+02 Score=30.14 Aligned_cols=23 Identities=22% Similarity=0.522 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010706 99 IFVMAVTHISYSCLTMLLAIVKI 121 (503)
Q Consensus 99 IFVLAV~HV~Ys~lTm~Lg~~Ki 121 (503)
||+|---|-+||+.+++|...|-
T Consensus 193 vfflfskhylfciaaillclikt 215 (218)
T PF15444_consen 193 VFFLFSKHYLFCIAAILLCLIKT 215 (218)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Confidence 46666778899999999999884
No 8
>PF09878 DUF2105: Predicted membrane protein (DUF2105); InterPro: IPR019212 This entry represents a protein found in various hypothetical archaeal proteins, has no known function.
Probab=18.01 E-value=72 Score=32.08 Aligned_cols=47 Identities=23% Similarity=0.439 Sum_probs=28.9
Q ss_pred HhhccccccchhHHHHHHHHHhhccCCcchhhhhhhHHH---HHHHhhhhHHHHH
Q 010706 217 EEFQRIVGVSGPLWGFVVAFMLFNVKGSNLYFWIAIIPV---TLVLLVGSKLQHV 268 (503)
Q Consensus 217 dDFk~VVGIS~~LW~fvviFlLlNv~Gw~~yfWlsfiPl---ilvLlVGtKLq~I 268 (503)
|-...+-||.|-+|++.-+.+++ ..-+|+.++=+ -+++=||+|+--|
T Consensus 158 egi~~~SGiaWalWi~gF~~Ff~-----~P~~Wl~~L~lAg~gl~iKV~sKlgLI 207 (212)
T PF09878_consen 158 EGIEGVSGIAWALWIAGFIGFFL-----FPQYWLLALMLAGCGLLIKVGSKLGLI 207 (212)
T ss_pred ehhhhhhhHHHHHHHHHHHHHHH-----hHHHHHHHHHHHhcchhhhhhhhhhhh
Confidence 34456788889999766443333 23456655433 4677788887543
No 9
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=17.64 E-value=2.2e+02 Score=24.40 Aligned_cols=31 Identities=23% Similarity=0.597 Sum_probs=22.9
Q ss_pred HHHHHHHhhccCCcchhhhhhhHHHHHHHhhhhHHHHHHH
Q 010706 231 GFVVAFMLFNVKGSNLYFWIAIIPVTLVLLVGSKLQHVIA 270 (503)
Q Consensus 231 ~fvviFlLlNv~Gw~~yfWlsfiPlilvLlVGtKLq~IIt 270 (503)
+|.++|+++ . +++.|++++.++|--.|.++.
T Consensus 19 LF~ilfIvl--------m-ipI~pll~~~~i~~~~E~l~e 49 (72)
T PF13198_consen 19 LFFILFIVL--------M-IPISPLLFVWIIGKIIEPLFE 49 (72)
T ss_pred HHHHHHHHH--------H-HHHHHHHHHHHHHHHHHHHHH
Confidence 566677764 2 799999999999986665543
No 10
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=16.69 E-value=4.9e+02 Score=31.43 Aligned_cols=38 Identities=11% Similarity=0.051 Sum_probs=31.1
Q ss_pred ccccCcchHHHHHHHHHHhhhhhHHHHHHHHHHhhCCC
Q 010706 294 LFWFNKPELMLSLIHFILFQNAFELASFFWFWWQFGYN 331 (503)
Q Consensus 294 lFWF~rP~llL~LIHfiLFQNAFElAfF~W~~~~fG~~ 331 (503)
=..++++.++...+-..++|-.+.++.|+|.++.+|+.
T Consensus 816 ~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~ 853 (997)
T TIGR01106 816 DKLVNERLISMAYGQIGMIQALGGFFTYFVILAENGFL 853 (997)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 36677777777777888899999999999998877753
Done!