Query 010706
Match_columns 503
No_of_seqs 162 out of 249
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 12:33:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010706.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010706hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 15.7 2E+02 0.0069 23.4 4.8 17 121-137 41-57 (79)
2 1wy3_A Villin; structural prot 12.5 47 0.0016 23.5 0.1 12 216-227 3-14 (35)
3 1und_A Advillin, P92; actin bi 12.2 49 0.0017 23.7 0.1 12 216-227 5-16 (37)
4 2cu7_A KIAA1915 protein; nucle 10.5 1.8E+02 0.006 22.5 2.9 40 362-401 20-62 (72)
5 2w7n_A TRFB transcriptional re 10.0 1.3E+02 0.0044 25.6 2.1 24 375-398 75-98 (101)
6 2jm3_A Hypothetical protein; z 7.4 5.2E+02 0.018 21.1 4.7 39 378-427 30-68 (91)
7 1vf6_C Maguk P55 subfamily mem 7.1 1.9E+02 0.0066 23.5 1.8 18 301-318 40-57 (72)
8 1qzp_A Dematin; villin headpie 6.6 1.2E+02 0.004 24.3 0.3 12 216-227 36-47 (68)
9 2j3w_A Sedlin, trafficking pro 6.3 1.5E+02 0.0051 26.0 0.8 31 355-389 109-139 (142)
10 2our_A CAMP and CAMP-inhibited 6.3 2.1E+02 0.0073 28.6 2.0 63 327-396 260-324 (331)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=15.73 E-value=2e+02 Score=23.36 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=12.9
Q ss_pred HhhhHHhHHHhhhcccc
Q 010706 121 IHSWRVWEEEAHMDRHD 137 (503)
Q Consensus 121 ir~Wk~WE~e~~~~~~~ 137 (503)
-|.++++|+|-+....+
T Consensus 41 rrE~~kFEkE~~~~~w~ 57 (79)
T 2knc_B 41 RKEFAKFEEERARAKWD 57 (79)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcccc
Confidence 67899999998765443
No 2
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=12.52 E-value=47 Score=23.53 Aligned_cols=12 Identities=25% Similarity=0.800 Sum_probs=9.4
Q ss_pred HHhhccccccch
Q 010706 216 EEEFQRIVGVSG 227 (503)
Q Consensus 216 EdDFk~VVGIS~ 227 (503)
|+||+.|.|+|-
T Consensus 3 d~dF~~vFgmsr 14 (35)
T 1wy3_A 3 DEDFKAVFGMTR 14 (35)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCCCH
Confidence 678888888875
No 3
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=12.23 E-value=49 Score=23.70 Aligned_cols=12 Identities=25% Similarity=0.742 Sum_probs=9.9
Q ss_pred HHhhccccccch
Q 010706 216 EEEFQRIVGVSG 227 (503)
Q Consensus 216 EdDFk~VVGIS~ 227 (503)
|+||+.|.|+|-
T Consensus 5 d~dF~~vFgmsr 16 (37)
T 1und_A 5 EQDFVSVFGITR 16 (37)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCcCH
Confidence 688888888875
No 4
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=10.45 E-value=1.8e+02 Score=22.53 Aligned_cols=40 Identities=15% Similarity=0.201 Sum_probs=23.3
Q ss_pred hhhHhhhhccccc--ccccchhHHHHHHh-HHHHHhhhhccCC
Q 010706 362 LYALVTQMGTNYK--AALIPRRIRETIHG-WGKAARRKRRLGH 401 (503)
Q Consensus 362 LYALVTQMGS~~K--~~if~e~v~~~L~~-W~~~akkk~~~~~ 401 (503)
|..+|.+.|.+.+ ...|+-++...+++ |..-.+++.+.+.
T Consensus 20 l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~g~ 62 (72)
T 2cu7_A 20 FEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGL 62 (72)
T ss_dssp HHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSCT
T ss_pred HHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 4556677776544 23345555555554 7777777765544
No 5
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=10.00 E-value=1.3e+02 Score=25.56 Aligned_cols=24 Identities=21% Similarity=0.537 Sum_probs=18.5
Q ss_pred ccccchhHHHHHHhHHHHHhhhhc
Q 010706 375 AALIPRRIRETIHGWGKAARRKRR 398 (503)
Q Consensus 375 ~~if~e~v~~~L~~W~~~akkk~~ 398 (503)
..+.+++.+..++.|++.||||..
T Consensus 75 ~v~lP~~~a~~v~~~~~~a~~~~~ 98 (101)
T 2w7n_A 75 TAVLPEHQAYIVRKWEADAKKKQE 98 (101)
T ss_dssp EEEECHHHHHHHHHHHHHHHC---
T ss_pred eeecCHHHHHHHHHHHHHHHHhhc
Confidence 356789999999999999988764
No 6
>2jm3_A Hypothetical protein; zinc finger, domain, metal binding protein; NMR {Caenorhabditis elegans}
Probab=7.38 E-value=5.2e+02 Score=21.13 Aligned_cols=39 Identities=23% Similarity=0.213 Sum_probs=25.4
Q ss_pred cchhHHHHHHhHHHHHhhhhccCCCCCCCccccccCCCcccccccccccc
Q 010706 378 IPRRIRETIHGWGKAARRKRRLGHFTDDSTIHTVTDASTVASLEEYDHQL 427 (503)
Q Consensus 378 f~e~v~~~L~~W~~~akkk~~~~~~~~~~~~~~~t~~~~~~~l~~~~~~~ 427 (503)
|..+-.+-.+.|-+..+++.. +++..+-|||.+=..+++
T Consensus 30 FPk~~~~~rk~Wl~ai~r~~~-----------~~~~~~rICS~HF~~~~~ 68 (91)
T 2jm3_A 30 IPKRPLILRQRWLTAIGRTEE-----------TVVSQLRICSAHFEGGEK 68 (91)
T ss_dssp CCCSSHHHHHHHHHHHTCCGG-----------GSSSSCCBCGGGSTTSCC
T ss_pred CCCCCHHHHHHHHHHhCCCCC-----------CCCCCcEEechhcCCCCc
Confidence 554445668899998876532 134667899998655544
No 7
>1vf6_C Maguk P55 subfamily member 5; L27 domain, heterodimer, four-helical bundle, coiled-coil, hydrophobic packing interactions; 2.10A {Mus musculus} SCOP: a.194.1.1
Probab=7.11 E-value=1.9e+02 Score=23.47 Aligned_cols=18 Identities=44% Similarity=0.683 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHhhhhhHH
Q 010706 301 ELMLSLIHFILFQNAFEL 318 (503)
Q Consensus 301 ~llL~LIHfiLFQNAFEl 318 (503)
.+||-|.|=.=|||||-|
T Consensus 40 ~lllqL~~~~DFQ~A~kI 57 (72)
T 1vf6_C 40 SLLLQLVQNRDFQNAFKI 57 (72)
T ss_dssp HHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHH
Confidence 488889999999999976
No 8
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=6.57 E-value=1.2e+02 Score=24.26 Aligned_cols=12 Identities=33% Similarity=0.670 Sum_probs=10.3
Q ss_pred HHhhccccccch
Q 010706 216 EEEFQRIVGVSG 227 (503)
Q Consensus 216 EdDFk~VVGIS~ 227 (503)
++||+.|.|+|.
T Consensus 36 dedF~~vFgmsr 47 (68)
T 1qzp_A 36 AEDFSRVFAMSP 47 (68)
T ss_dssp HHHHHHHSSSCH
T ss_pred HHHHHHHHCcCH
Confidence 789999999885
No 9
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=6.32 E-value=1.5e+02 Score=25.95 Aligned_cols=31 Identities=10% Similarity=0.255 Sum_probs=18.2
Q ss_pred cccccchhhhHhhhhcccccccccchhHHHHHHhH
Q 010706 355 CSYSTLPLYALVTQMGTNYKAALIPRRIRETIHGW 389 (503)
Q Consensus 355 CSY~TLPLYALVTQMGS~~K~~if~e~v~~~L~~W 389 (503)
+-|+.=|+| +.|...+-+.|+++|++.+++|
T Consensus 109 ~~~v~NPfy----~~~~pI~s~~Fd~~v~~~~~~~ 139 (142)
T 2j3w_A 109 IKFAMNPFY----EPNSPIRSSAFDRKVQFLGKKH 139 (142)
T ss_dssp HHHHHSTTC----CTTCCCCCHHHHHHHHHHHHHH
T ss_pred HHHhcCCCC----CCCCceecHHHHHHHHHHHHHh
Confidence 334444666 3355666666666666666665
No 10
>2our_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE10, substrate specificity, hydrolase; HET: CMP; 1.45A {Homo sapiens} PDB: 2ous_A 2ouu_A* 3sn7_A* 3sni_A* 3snl_A* 4dff_A* 2wey_A* 2oun_A* 2oup_A 2ouq_A* 2ouv_A 2ouy_A* 4ael_A* 2y0j_A* 4ddl_A* 3uuo_A* 3ui7_A* 2o8h_A* 2ovv_A* 2ovy_A* ...
Probab=6.25 E-value=2.1e+02 Score=28.61 Aligned_cols=63 Identities=19% Similarity=0.317 Sum_probs=40.8
Q ss_pred hhCCC-cccccccc-ceeeeeeeecccccccccccchhhhHhhhhcccccccccchhHHHHHHhHHHHHhhh
Q 010706 327 QFGYN-SCFIHNHL-LVYLRLILGFAGQFLCSYSTLPLYALVTQMGTNYKAALIPRRIRETIHGWGKAARRK 396 (503)
Q Consensus 327 ~fG~~-SCf~~~~~-~ii~Rl~~Gv~vQvlCSY~TLPLYALVTQMGS~~K~~if~e~v~~~L~~W~~~akkk 396 (503)
+.|.. |-+|+... .-+++.=+|++ .|+.+|||..++++-..++. .-+++.+.+..|.+.++++
T Consensus 260 ~lgl~~sp~~DR~~~~~~~k~QigFi-----~~vv~Pl~~~l~~~~p~~~~--~~~~l~~N~~~W~~~~~~~ 324 (331)
T 2our_A 260 KLGIQPIPMMDRDKKDEVPQGQLGFY-----NAVAIPCYTTLTQILPPTEP--LLKACRDNLSQWEKVIRGE 324 (331)
T ss_dssp HTTCCCCGGGCGGGGGGHHHHHHHHH-----HHTHHHHHHHHHHHCGGGHH--HHHHHHHHHHHHHHHHHTC
T ss_pred hcCCCCCCccCccccccchHHHHHHH-----HHHHHHHHHHHHHHChhhHH--HHHHHHHHHHHHHHHHhCC
Confidence 34553 44555332 22444444433 48889999999998666553 3488999999998777654
Done!