Query 010706
Match_columns 503
No_of_seqs 162 out of 249
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 12:33:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010706.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010706hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vf6c_ a.194.1.1 (C:) Maguk p 26.3 14 0.001 26.3 1.8 18 301-318 29-46 (51)
2 d1yu8x1 a.14.1.1 (X:42-76) Vil 12.7 22 0.0016 23.7 0.1 12 216-227 3-14 (35)
3 d1unda_ a.14.1.1 (A:) Advillin 12.4 23 0.0016 23.7 0.1 12 216-227 4-15 (36)
4 d1xrda1 f.3.1.1 (A:1-52) Light 11.8 45 0.0033 24.0 1.6 13 93-105 15-27 (52)
5 d1ug0a_ a.217.1.1 (A:) Splicin 11.1 62 0.0046 24.7 2.4 53 263-328 25-80 (88)
6 d1q1ha_ a.4.5.41 (A:) Transcri 8.5 30 0.0022 27.3 -0.5 8 242-249 73-80 (88)
7 d2axtl1 f.23.31.1 (L:1-37) Pho 6.3 1.4E+02 0.0099 19.8 2.1 13 97-109 22-34 (37)
8 d1yu5x1 a.14.1.1 (X:10-76) Vil 6.2 56 0.0041 24.4 0.1 12 216-227 35-46 (67)
9 d1qzpa_ a.14.1.1 (A:) Dematin 6.1 61 0.0045 24.2 0.3 13 216-228 36-48 (68)
10 d2j3wa1 d.110.4.3 (A:1-140) Se 5.9 77 0.0056 25.9 0.8 32 354-389 106-137 (140)
No 1
>d1vf6c_ a.194.1.1 (C:) Maguk p55 subfamily member 5, Patj {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.33 E-value=14 Score=26.33 Aligned_cols=18 Identities=44% Similarity=0.683 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHhhhhhHH
Q 010706 301 ELMLSLIHFILFQNAFEL 318 (503)
Q Consensus 301 ~llL~LIHfiLFQNAFEl 318 (503)
.++|-|.|=.=|||||.|
T Consensus 29 ~l~lqLvqn~DFQnAfkI 46 (51)
T d1vf6c_ 29 SLLLQLVQNRDFQNAFKI 46 (51)
T ss_dssp HHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHH
Confidence 588999999999999986
No 2
>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=12.66 E-value=22 Score=23.65 Aligned_cols=12 Identities=25% Similarity=0.800 Sum_probs=9.2
Q ss_pred HHhhccccccch
Q 010706 216 EEEFQRIVGVSG 227 (503)
Q Consensus 216 EdDFk~VVGIS~ 227 (503)
++||+.|.|+|-
T Consensus 3 d~dF~~vfgmsr 14 (35)
T d1yu8x1 3 DEDFKAVFGMTR 14 (35)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCCCH
Confidence 678888888874
No 3
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.37 E-value=23 Score=23.72 Aligned_cols=12 Identities=25% Similarity=0.742 Sum_probs=9.5
Q ss_pred HHhhccccccch
Q 010706 216 EEEFQRIVGVSG 227 (503)
Q Consensus 216 EdDFk~VVGIS~ 227 (503)
|+||+.|.|+|-
T Consensus 4 d~dF~~vFgmsr 15 (36)
T d1unda_ 4 EQDFVSVFGITR 15 (36)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCcCH
Confidence 678888888874
No 4
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=11.76 E-value=45 Score=23.97 Aligned_cols=13 Identities=38% Similarity=0.667 Sum_probs=10.7
Q ss_pred chhhhHHHHHHHH
Q 010706 93 EQLHRFIFVMAVT 105 (503)
Q Consensus 93 HQLHIFIFVLAV~ 105 (503)
--+|.|+|+||+.
T Consensus 15 va~~~fL~~LAl~ 27 (52)
T d1xrda1 15 VGLATFLFVLALL 27 (52)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3489999999974
No 5
>d1ug0a_ a.217.1.1 (A:) Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.07 E-value=62 Score=24.72 Aligned_cols=53 Identities=15% Similarity=-0.018 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHhcccCcccCcc--cccCCCccccCc-chHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 010706 263 SKLQHVIATLALENAGITGYFAGAK--LKPRDELFWFNK-PELMLSLIHFILFQNAFELASFFWFWWQF 328 (503)
Q Consensus 263 tKLq~IIt~LAlei~e~~~~~~g~~--vkPsD~lFWF~r-P~llL~LIHfiLFQNAFElAfF~W~~~~f 328 (503)
.++..||.++|.=|++.....+-.+ =+.+|..|||=+ |. .=.-+|+-|-+++|
T Consensus 25 ~~~~~iI~~tA~~Vak~G~~fE~~l~~k~~~np~F~FL~d~~-------------~~~~~YY~~kl~e~ 80 (88)
T d1ug0a_ 25 AETRRVIEKLARFVAEGGPELEKVAMEDYKDNPAFTFLHDKN-------------SREFLYYRRKVAEI 80 (88)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHTTTCSSSHHHHCSS-------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHhccCCCCceeeCCCC-------------CCCcHHHHHHHHHH
Confidence 3788999999999987543333222 146788899843 33 23336677777665
No 6
>d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=8.49 E-value=30 Score=27.26 Aligned_cols=8 Identities=38% Similarity=1.256 Sum_probs=5.6
Q ss_pred CCcchhhh
Q 010706 242 KGSNLYFW 249 (503)
Q Consensus 242 ~Gw~~yfW 249 (503)
.||++|+|
T Consensus 73 ~gw~~Y~W 80 (88)
T d1q1ha_ 73 SGWFIYYW 80 (88)
T ss_dssp CCCCEEEE
T ss_pred CCcEEEEE
Confidence 47777777
No 7
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.30 E-value=1.4e+02 Score=19.83 Aligned_cols=13 Identities=38% Similarity=0.590 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHH
Q 010706 97 RFIFVMAVTHISY 109 (503)
Q Consensus 97 IFIFVLAV~HV~Y 109 (503)
.+||||||.--.|
T Consensus 22 Llifvl~vLFssY 34 (37)
T d2axtl1 22 LLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5799999876555
No 8
>d1yu5x1 a.14.1.1 (X:10-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=6.21 E-value=56 Score=24.36 Aligned_cols=12 Identities=25% Similarity=0.800 Sum_probs=10.5
Q ss_pred HHhhccccccch
Q 010706 216 EEEFQRIVGVSG 227 (503)
Q Consensus 216 EdDFk~VVGIS~ 227 (503)
++||+.|.|+|.
T Consensus 35 d~dF~~vFgms~ 46 (67)
T d1yu5x1 35 DEDFKAVFGMTR 46 (67)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCcCH
Confidence 789999999885
No 9
>d1qzpa_ a.14.1.1 (A:) Dematin {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.09 E-value=61 Score=24.23 Aligned_cols=13 Identities=31% Similarity=0.606 Sum_probs=10.6
Q ss_pred HHhhccccccchh
Q 010706 216 EEEFQRIVGVSGP 228 (503)
Q Consensus 216 EdDFk~VVGIS~~ 228 (503)
++||+.|.|+|.-
T Consensus 36 d~dF~~vFgms~~ 48 (68)
T d1qzpa_ 36 AEDFSRVFAMSPE 48 (68)
T ss_dssp HHHHHHHSSSCHH
T ss_pred HHHHHHHHCcCHH
Confidence 7899999998853
No 10
>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.87 E-value=77 Score=25.91 Aligned_cols=32 Identities=9% Similarity=0.230 Sum_probs=22.8
Q ss_pred ccccccchhhhHhhhhcccccccccchhHHHHHHhH
Q 010706 354 LCSYSTLPLYALVTQMGTNYKAALIPRRIRETIHGW 389 (503)
Q Consensus 354 lCSY~TLPLYALVTQMGS~~K~~if~e~v~~~L~~W 389 (503)
-+-|+.=|+|. .|+..+-..|+++|++..++|
T Consensus 106 Yv~~v~NPfy~----~~~pI~s~~Fd~~v~~~~~~~ 137 (140)
T d2j3wa1 106 YIKFAMNPFYE----PNSPIRSSAFDRKVQFLGKKH 137 (140)
T ss_dssp HHHHHHSTTCC----TTCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHhhCccCC----CCCcccCHHHHHHHHHHHHHH
Confidence 35566667774 466677778888888887777
Done!