Query 010709
Match_columns 503
No_of_seqs 351 out of 2862
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 03:40:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010709.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010709hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0331 ATP-dependent RNA heli 100.0 9.8E-71 2.1E-75 534.7 34.1 346 122-474 92-449 (519)
2 KOG0330 ATP-dependent RNA heli 100.0 1.1E-68 2.3E-73 488.0 31.0 350 119-483 59-418 (476)
3 KOG0333 U5 snRNP-like RNA heli 100.0 2.5E-66 5.4E-71 488.6 31.8 374 87-474 215-625 (673)
4 PTZ00110 helicase; Provisional 100.0 1.7E-64 3.7E-69 518.4 46.8 385 73-468 85-471 (545)
5 KOG0341 DEAD-box protein abstr 100.0 7.7E-67 1.7E-71 474.8 21.0 387 70-470 123-517 (610)
6 COG0513 SrmB Superfamily II DN 100.0 4.8E-63 1E-67 502.7 40.5 337 121-469 29-368 (513)
7 PLN00206 DEAD-box ATP-dependen 100.0 3.8E-62 8.3E-67 499.8 46.0 380 76-468 79-462 (518)
8 KOG0336 ATP-dependent RNA heli 100.0 9.2E-64 2E-68 457.6 29.1 393 73-475 168-574 (629)
9 KOG0328 Predicted ATP-dependen 100.0 2.7E-63 5.9E-68 433.9 27.4 356 115-485 21-386 (400)
10 KOG0339 ATP-dependent RNA heli 100.0 1.7E-61 3.8E-66 453.6 31.8 379 76-467 182-561 (731)
11 KOG0338 ATP-dependent RNA heli 100.0 2.3E-62 5E-67 460.0 25.5 334 120-465 180-517 (691)
12 PRK04837 ATP-dependent RNA hel 100.0 3.2E-60 6.9E-65 477.4 41.5 338 121-468 8-349 (423)
13 KOG0342 ATP-dependent RNA heli 100.0 1.7E-60 3.8E-65 447.1 31.1 340 120-468 81-424 (543)
14 PRK10590 ATP-dependent RNA hel 100.0 3E-59 6.5E-64 473.1 42.7 337 122-468 2-339 (456)
15 KOG0343 RNA Helicase [RNA proc 100.0 1.4E-60 3.1E-65 451.9 30.2 358 91-469 48-410 (758)
16 PRK11776 ATP-dependent RNA hel 100.0 3.5E-59 7.6E-64 474.9 41.7 333 121-468 4-336 (460)
17 KOG0345 ATP-dependent RNA heli 100.0 1.2E-59 2.7E-64 438.3 34.1 338 122-468 5-351 (567)
18 PRK11634 ATP-dependent RNA hel 100.0 1.1E-58 2.5E-63 479.0 42.2 334 121-468 6-339 (629)
19 KOG0340 ATP-dependent RNA heli 100.0 9.7E-60 2.1E-64 424.4 29.1 352 119-482 5-371 (442)
20 PRK04537 ATP-dependent RNA hel 100.0 1.6E-58 3.5E-63 475.6 41.8 338 121-468 9-351 (572)
21 KOG0335 ATP-dependent RNA heli 100.0 6E-60 1.3E-64 451.3 28.2 356 112-468 65-431 (482)
22 PRK11192 ATP-dependent RNA hel 100.0 3.2E-57 6.9E-62 457.8 43.0 336 122-468 2-339 (434)
23 KOG0326 ATP-dependent RNA heli 100.0 1.4E-59 3E-64 417.4 18.1 350 120-485 84-442 (459)
24 PRK01297 ATP-dependent RNA hel 100.0 1E-55 2.2E-60 450.5 49.0 341 118-468 84-429 (475)
25 KOG0348 ATP-dependent RNA heli 100.0 6.9E-58 1.5E-62 432.3 29.0 349 115-468 130-541 (708)
26 KOG0334 RNA helicase [RNA proc 100.0 1.1E-56 2.5E-61 457.6 29.4 381 76-469 323-708 (997)
27 PTZ00424 helicase 45; Provisio 100.0 1.4E-54 3.1E-59 435.6 41.5 335 119-468 26-361 (401)
28 KOG0346 RNA helicase [RNA proc 100.0 5.4E-56 1.2E-60 410.4 28.1 341 121-469 19-398 (569)
29 KOG0347 RNA helicase [RNA proc 100.0 5.3E-55 1.2E-59 413.9 18.9 341 117-468 177-557 (731)
30 KOG0332 ATP-dependent RNA heli 100.0 3.9E-52 8.4E-57 377.5 28.3 339 113-469 82-431 (477)
31 KOG0327 Translation initiation 100.0 1.2E-52 2.6E-57 384.3 24.9 349 120-485 25-383 (397)
32 TIGR03817 DECH_helic helicase/ 100.0 1.3E-50 2.8E-55 427.2 37.1 319 127-468 20-373 (742)
33 KOG4284 DEAD box protein [Tran 100.0 2.9E-51 6.2E-56 394.7 24.5 339 115-468 19-366 (980)
34 KOG0337 ATP-dependent RNA heli 100.0 4.2E-51 9.2E-56 376.2 19.7 337 120-469 20-356 (529)
35 PLN03137 ATP-dependent DNA hel 100.0 2.1E-48 4.6E-53 407.2 37.0 315 126-467 442-773 (1195)
36 KOG0344 ATP-dependent RNA heli 100.0 3.2E-49 7E-54 379.9 24.9 355 99-467 114-481 (593)
37 TIGR00614 recQ_fam ATP-depende 100.0 6.3E-48 1.4E-52 391.6 32.9 304 137-468 5-320 (470)
38 KOG0350 DEAD-box ATP-dependent 100.0 9.1E-48 2E-52 361.3 27.2 336 119-468 125-527 (620)
39 PRK13767 ATP-dependent helicas 100.0 1.7E-46 3.8E-51 403.7 34.8 331 128-468 18-384 (876)
40 PRK11057 ATP-dependent DNA hel 100.0 2.7E-46 6E-51 389.1 35.2 309 130-468 11-330 (607)
41 TIGR01389 recQ ATP-dependent D 100.0 4.5E-45 9.7E-50 381.5 33.3 300 138-468 8-318 (591)
42 PRK02362 ski2-like helicase; P 100.0 1.5E-45 3.2E-50 393.3 29.3 324 122-468 2-382 (737)
43 COG1201 Lhr Lhr-like helicases 100.0 5.7E-45 1.2E-49 374.4 31.0 361 128-499 8-402 (814)
44 PRK00254 ski2-like helicase; P 100.0 2.5E-44 5.4E-49 382.9 31.8 325 122-468 2-373 (720)
45 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.5E-43 3.4E-48 365.9 34.5 305 139-468 12-377 (844)
46 TIGR00580 mfd transcription-re 100.0 3.7E-42 8.1E-47 366.0 38.6 339 128-499 436-803 (926)
47 PRK10689 transcription-repair 100.0 1.8E-41 3.8E-46 368.4 39.9 337 130-499 588-952 (1147)
48 PRK01172 ski2-like helicase; P 100.0 1.9E-42 4.2E-47 367.0 29.7 319 122-468 2-363 (674)
49 COG0514 RecQ Superfamily II DN 100.0 3.7E-42 7.9E-47 341.6 29.3 301 138-467 12-323 (590)
50 TIGR01970 DEAH_box_HrpB ATP-de 100.0 2E-41 4.4E-46 356.9 34.2 294 148-468 7-324 (819)
51 PRK09751 putative ATP-dependen 100.0 3.3E-41 7.1E-46 367.8 33.2 299 163-468 1-371 (1490)
52 PHA02653 RNA helicase NPH-II; 100.0 1.1E-40 2.3E-45 343.3 32.8 301 145-468 166-502 (675)
53 KOG0329 ATP-dependent RNA heli 100.0 2E-42 4.3E-47 298.9 15.9 301 122-471 43-345 (387)
54 PRK10917 ATP-dependent DNA hel 100.0 1E-39 2.2E-44 343.4 38.8 335 131-497 249-615 (681)
55 PRK11664 ATP-dependent RNA hel 100.0 1.2E-40 2.6E-45 352.0 31.3 294 148-468 10-327 (812)
56 COG1111 MPH1 ERCC4-like helica 100.0 2.5E-39 5.4E-44 307.1 35.7 349 140-498 12-506 (542)
57 TIGR00643 recG ATP-dependent D 100.0 3.1E-39 6.8E-44 337.7 38.5 307 131-468 224-553 (630)
58 PRK09401 reverse gyrase; Revie 100.0 6E-40 1.3E-44 357.2 33.7 298 139-468 77-431 (1176)
59 PRK14701 reverse gyrase; Provi 100.0 1.8E-38 3.8E-43 352.5 35.4 311 131-470 67-445 (1638)
60 PHA02558 uvsW UvsW helicase; P 100.0 4.1E-38 9E-43 321.3 30.3 298 141-468 112-439 (501)
61 COG1202 Superfamily II helicas 100.0 2.2E-38 4.8E-43 302.7 23.0 330 123-469 196-539 (830)
62 KOG0349 Putative DEAD-box RNA 100.0 1.4E-38 3.1E-43 294.2 19.0 275 194-468 286-602 (725)
63 COG1205 Distinct helicase fami 100.0 1.4E-37 3E-42 329.1 28.4 326 129-469 56-410 (851)
64 TIGR01587 cas3_core CRISPR-ass 100.0 1.1E-37 2.3E-42 308.1 24.5 287 160-469 1-320 (358)
65 TIGR01054 rgy reverse gyrase. 100.0 9.3E-37 2E-41 332.9 33.3 290 134-454 69-410 (1171)
66 TIGR03158 cas3_cyano CRISPR-as 100.0 2.7E-36 5.8E-41 294.8 32.6 297 147-466 1-357 (357)
67 KOG0354 DEAD-box like helicase 100.0 3.3E-36 7.1E-41 302.4 27.8 351 128-494 47-549 (746)
68 PRK12898 secA preprotein trans 100.0 8.6E-36 1.9E-40 302.1 29.3 303 142-468 102-573 (656)
69 KOG0351 ATP-dependent DNA heli 100.0 2E-36 4.4E-41 317.7 25.0 310 133-467 254-578 (941)
70 PRK11131 ATP-dependent RNA hel 100.0 1E-35 2.2E-40 319.4 30.7 287 148-468 79-399 (1294)
71 PRK13766 Hef nuclease; Provisi 100.0 6.7E-35 1.5E-39 315.3 36.5 313 140-467 12-466 (773)
72 KOG0352 ATP-dependent DNA heli 100.0 1.1E-36 2.4E-41 281.3 18.3 313 134-467 9-348 (641)
73 COG1204 Superfamily II helicas 100.0 4E-36 8.6E-41 313.7 24.6 323 127-470 15-395 (766)
74 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.1E-34 2.4E-39 312.7 27.0 290 150-468 74-392 (1283)
75 PRK09200 preprotein translocas 100.0 4.6E-34 9.9E-39 295.7 29.7 306 139-468 75-528 (790)
76 KOG0926 DEAH-box RNA helicase 100.0 1E-33 2.2E-38 279.5 26.5 299 150-469 263-693 (1172)
77 TIGR00963 secA preprotein tran 100.0 2.6E-33 5.6E-38 285.5 30.2 303 142-468 55-504 (745)
78 KOG0353 ATP-dependent DNA heli 100.0 7E-34 1.5E-38 259.2 23.2 313 123-460 73-403 (695)
79 TIGR03714 secA2 accessory Sec 100.0 3E-33 6.5E-38 286.9 29.1 303 144-468 69-524 (762)
80 TIGR00603 rad25 DNA repair hel 100.0 3E-33 6.4E-38 287.0 26.3 293 142-469 254-588 (732)
81 COG1643 HrpA HrpA-like helicas 100.0 9.5E-33 2.1E-37 286.6 25.6 297 146-469 53-376 (845)
82 KOG0922 DEAH-box RNA helicase 100.0 2.7E-32 5.9E-37 267.5 26.8 297 145-469 53-379 (674)
83 KOG0952 DNA/RNA helicase MER3/ 100.0 2.5E-32 5.4E-37 277.6 25.7 321 136-467 103-475 (1230)
84 cd00268 DEADc DEAD-box helicas 100.0 8E-31 1.7E-35 238.0 26.1 202 123-328 1-202 (203)
85 PRK05580 primosome assembly pr 100.0 5.2E-30 1.1E-34 268.8 32.8 298 142-467 143-535 (679)
86 COG1061 SSL2 DNA or RNA helica 100.0 8.5E-31 1.8E-35 262.2 24.4 301 142-468 35-376 (442)
87 PRK04914 ATP-dependent helicas 100.0 1.1E-29 2.3E-34 269.8 29.9 305 143-468 152-590 (956)
88 PRK09694 helicase Cas3; Provis 100.0 1.8E-29 3.9E-34 266.4 31.4 313 141-470 284-664 (878)
89 KOG0923 mRNA splicing factor A 100.0 7.3E-31 1.6E-35 254.9 19.0 301 142-468 264-594 (902)
90 KOG0947 Cytoplasmic exosomal R 100.0 1.3E-29 2.9E-34 255.0 27.0 297 143-469 297-709 (1248)
91 COG1200 RecG RecG-like helicas 100.0 5.4E-29 1.2E-33 247.0 30.4 309 129-468 248-578 (677)
92 COG1197 Mfd Transcription-repa 100.0 8E-29 1.7E-33 259.0 32.8 340 128-499 579-946 (1139)
93 KOG0924 mRNA splicing factor A 100.0 8.4E-30 1.8E-34 248.0 21.8 298 145-469 358-686 (1042)
94 KOG0951 RNA helicase BRR2, DEA 100.0 3.7E-29 7.9E-34 257.7 24.8 332 127-469 295-688 (1674)
95 KOG0948 Nuclear exosomal RNA h 100.0 5.4E-30 1.2E-34 251.8 14.6 303 143-469 129-525 (1041)
96 TIGR00595 priA primosomal prot 100.0 2.7E-28 5.8E-33 247.0 26.9 277 162-467 1-367 (505)
97 COG4581 Superfamily II RNA hel 100.0 1.7E-28 3.7E-33 256.5 23.5 313 137-468 114-522 (1041)
98 PRK11448 hsdR type I restricti 100.0 1.2E-27 2.5E-32 259.9 27.8 307 142-470 412-802 (1123)
99 PRK13104 secA preprotein trans 100.0 3.9E-27 8.5E-32 243.7 29.3 301 143-468 82-574 (896)
100 KOG0920 ATP-dependent RNA heli 100.0 1.1E-27 2.5E-32 247.8 24.2 307 143-469 173-533 (924)
101 PRK12904 preprotein translocas 100.0 1.2E-26 2.5E-31 240.1 28.4 302 142-468 80-560 (830)
102 COG4098 comFA Superfamily II D 100.0 9.7E-26 2.1E-30 204.0 28.7 295 143-473 97-406 (441)
103 PRK12906 secA preprotein trans 99.9 5E-26 1.1E-30 234.4 26.9 302 142-468 79-540 (796)
104 PF00270 DEAD: DEAD/DEAH box h 99.9 3.9E-26 8.5E-31 200.9 21.1 165 145-316 1-168 (169)
105 PLN03142 Probable chromatin-re 99.9 1.3E-25 2.8E-30 239.5 27.8 304 143-467 169-583 (1033)
106 PRK12899 secA preprotein trans 99.9 3.1E-25 6.7E-30 229.2 29.6 148 124-282 65-228 (970)
107 KOG0925 mRNA splicing factor A 99.9 4.1E-26 8.8E-31 214.9 20.7 319 119-468 23-375 (699)
108 KOG0950 DNA polymerase theta/e 99.9 2.5E-26 5.3E-31 233.2 19.2 316 135-468 215-596 (1008)
109 PRK13107 preprotein translocas 99.9 5.3E-24 1.1E-28 219.9 25.8 302 143-468 82-578 (908)
110 COG4096 HsdR Type I site-speci 99.9 3.1E-24 6.8E-29 215.9 22.4 306 141-471 163-528 (875)
111 KOG0385 Chromatin remodeling c 99.9 1.6E-22 3.5E-27 200.3 26.9 324 143-490 167-619 (971)
112 COG1110 Reverse gyrase [DNA re 99.9 4.3E-22 9.3E-27 203.6 25.5 281 140-453 80-417 (1187)
113 COG1203 CRISPR-associated heli 99.9 4.5E-22 9.7E-27 211.2 24.1 312 143-469 195-536 (733)
114 KOG0384 Chromodomain-helicase 99.9 7.3E-22 1.6E-26 204.7 20.6 340 142-496 369-837 (1373)
115 TIGR00348 hsdR type I site-spe 99.9 6.7E-21 1.4E-25 200.2 28.1 304 144-469 239-635 (667)
116 TIGR00631 uvrb excinuclease AB 99.9 1.5E-20 3.3E-25 195.1 29.4 113 349-468 424-541 (655)
117 COG0556 UvrB Helicase subunit 99.9 6.2E-21 1.3E-25 182.7 24.1 156 300-469 386-546 (663)
118 KOG0949 Predicted helicase, DE 99.9 1.6E-21 3.4E-26 197.6 18.4 160 143-312 511-673 (1330)
119 TIGR01407 dinG_rel DnaQ family 99.9 1E-19 2.2E-24 197.4 32.5 308 128-453 231-756 (850)
120 COG1198 PriA Primosomal protei 99.9 1.8E-20 3.9E-25 192.8 24.3 299 142-468 197-590 (730)
121 smart00487 DEXDc DEAD-like hel 99.9 2.5E-20 5.4E-25 168.4 22.1 188 138-332 3-192 (201)
122 PRK12900 secA preprotein trans 99.8 1.4E-19 3E-24 188.2 23.0 115 345-468 576-698 (1025)
123 KOG0387 Transcription-coupled 99.8 2.2E-19 4.7E-24 179.2 21.5 304 143-467 205-642 (923)
124 PRK05298 excinuclease ABC subu 99.8 8.1E-19 1.8E-23 183.8 27.1 112 350-468 429-545 (652)
125 KOG4150 Predicted ATP-dependen 99.8 6.8E-20 1.5E-24 176.0 15.5 315 137-467 280-626 (1034)
126 KOG1000 Chromatin remodeling p 99.8 3.6E-19 7.9E-24 168.6 16.4 304 142-467 197-593 (689)
127 PRK12326 preprotein translocas 99.8 7.8E-18 1.7E-22 170.5 26.6 302 142-468 77-534 (764)
128 KOG0389 SNF2 family DNA-depend 99.8 4.5E-18 9.8E-23 169.7 24.2 329 143-491 399-909 (941)
129 PRK07246 bifunctional ATP-depe 99.8 2.9E-17 6.4E-22 175.7 30.9 329 143-497 245-797 (820)
130 KOG0391 SNF2 family DNA-depend 99.8 2.9E-17 6.3E-22 169.0 27.4 154 143-310 615-775 (1958)
131 KOG1123 RNA polymerase II tran 99.8 1E-19 2.2E-24 172.5 8.8 292 142-467 301-633 (776)
132 PRK13103 secA preprotein trans 99.8 3.1E-17 6.7E-22 170.3 24.5 302 142-468 81-578 (913)
133 KOG0390 DNA repair protein, SN 99.8 2E-16 4.4E-21 162.1 28.1 317 143-467 238-691 (776)
134 KOG0392 SNF2 family DNA-depend 99.8 1.8E-17 3.9E-22 172.0 19.7 312 143-464 975-1435(1549)
135 PRK08074 bifunctional ATP-depe 99.8 4.2E-16 9E-21 169.9 28.4 81 373-453 751-835 (928)
136 cd00046 DEXDc DEAD-like helica 99.8 7.4E-17 1.6E-21 137.0 17.8 144 159-310 1-144 (144)
137 PF00271 Helicase_C: Helicase 99.7 5E-18 1.1E-22 128.2 8.7 77 392-468 1-77 (78)
138 PRK12903 secA preprotein trans 99.7 5.5E-16 1.2E-20 159.4 25.2 300 143-468 78-526 (925)
139 COG4889 Predicted helicase [Ge 99.7 9.1E-18 2E-22 168.7 10.8 333 122-467 141-571 (1518)
140 TIGR03117 cas_csf4 CRISPR-asso 99.7 8.8E-15 1.9E-19 149.9 31.1 78 373-452 469-560 (636)
141 cd00079 HELICc Helicase superf 99.7 2.4E-16 5.1E-21 132.2 14.0 112 351-469 12-123 (131)
142 PF04851 ResIII: Type III rest 99.7 1.4E-16 2.9E-21 142.1 12.1 153 143-311 3-183 (184)
143 CHL00122 secA preprotein trans 99.7 9.3E-15 2E-19 151.4 26.1 274 143-441 76-491 (870)
144 KOG0953 Mitochondrial RNA heli 99.7 4.8E-16 1E-20 149.8 14.0 255 159-469 192-462 (700)
145 KOG0951 RNA helicase BRR2, DEA 99.7 4.6E-15 1E-19 154.7 18.7 298 144-467 1144-1483(1674)
146 KOG0386 Chromatin remodeling c 99.6 1.4E-15 3E-20 155.8 13.4 307 142-468 393-823 (1157)
147 smart00490 HELICc helicase sup 99.6 2.7E-15 5.8E-20 114.5 9.1 80 389-468 2-81 (82)
148 COG1199 DinG Rad3-related DNA 99.6 3.7E-13 8E-18 143.6 28.2 77 374-453 479-559 (654)
149 PRK11747 dinG ATP-dependent DN 99.6 6.7E-13 1.4E-17 140.6 28.8 119 375-497 535-688 (697)
150 KOG0388 SNF2 family DNA-depend 99.6 5.8E-14 1.3E-18 138.7 17.4 94 374-467 1044-1138(1185)
151 PRK12902 secA preprotein trans 99.6 6E-13 1.3E-17 137.9 24.9 275 143-441 85-506 (939)
152 TIGR02562 cas3_yersinia CRISPR 99.6 8.3E-13 1.8E-17 138.9 25.6 318 142-470 407-881 (1110)
153 TIGR00604 rad3 DNA repair heli 99.5 4.8E-12 1E-16 135.2 29.1 74 139-217 6-83 (705)
154 KOG1002 Nucleotide excision re 99.5 1.5E-12 3.2E-17 124.2 22.0 90 375-464 639-736 (791)
155 PF06862 DUF1253: Protein of u 99.5 3.7E-11 8.1E-16 117.4 29.3 271 192-463 35-391 (442)
156 PRK14873 primosome assembly pr 99.5 6.4E-12 1.4E-16 130.8 24.0 138 162-317 164-310 (665)
157 KOG0921 Dosage compensation co 99.4 4.4E-13 9.6E-18 135.8 11.5 307 148-469 383-763 (1282)
158 KOG4439 RNA polymerase II tran 99.4 7.1E-12 1.5E-16 124.4 16.8 110 375-484 747-871 (901)
159 PF07652 Flavi_DEAD: Flaviviru 99.4 7.1E-13 1.5E-17 107.9 7.6 135 158-314 4-140 (148)
160 PRK12901 secA preprotein trans 99.4 3.5E-11 7.5E-16 126.3 21.3 114 345-468 606-728 (1112)
161 PF02399 Herpes_ori_bp: Origin 99.3 2E-10 4.4E-15 118.2 22.8 277 158-466 49-374 (824)
162 COG0553 HepA Superfamily II DN 99.3 8.1E-11 1.8E-15 130.6 20.0 92 376-467 713-806 (866)
163 PF00176 SNF2_N: SNF2 family N 99.3 2E-11 4.3E-16 117.8 12.5 154 147-310 1-172 (299)
164 KOG1015 Transcription regulato 99.3 1.1E-09 2.3E-14 112.3 23.6 93 375-467 1143-1261(1567)
165 smart00488 DEXDc2 DEAD-like he 99.2 4.7E-10 1E-14 106.4 13.8 73 143-217 8-84 (289)
166 smart00489 DEXDc3 DEAD-like he 99.2 4.7E-10 1E-14 106.4 13.8 73 143-217 8-84 (289)
167 COG0610 Type I site-specific r 99.2 7.2E-09 1.6E-13 113.1 24.2 293 159-471 274-639 (962)
168 KOG2340 Uncharacterized conser 99.1 1.9E-09 4.2E-14 104.2 15.9 317 142-464 215-647 (698)
169 COG0653 SecA Preprotein transl 99.1 6.7E-09 1.4E-13 107.9 20.0 319 143-492 80-550 (822)
170 PF07517 SecA_DEAD: SecA DEAD- 99.0 2E-08 4.4E-13 92.6 15.8 129 141-282 75-210 (266)
171 KOG0952 DNA/RNA helicase MER3/ 98.8 2E-09 4.3E-14 112.0 2.2 230 143-388 927-1167(1230)
172 PRK15483 type III restriction- 98.8 6.9E-08 1.5E-12 102.8 13.0 144 159-312 60-240 (986)
173 COG3587 Restriction endonuclea 98.7 5.5E-07 1.2E-11 92.5 17.5 55 424-478 483-537 (985)
174 TIGR00596 rad1 DNA repair prot 98.7 2E-07 4.4E-12 99.2 14.4 70 242-311 4-73 (814)
175 PF13604 AAA_30: AAA domain; P 98.6 3.1E-07 6.6E-12 82.1 9.7 123 143-309 1-130 (196)
176 KOG1016 Predicted DNA helicase 98.5 2E-05 4.3E-10 80.2 20.9 93 375-467 720-833 (1387)
177 PF13086 AAA_11: AAA domain; P 98.5 1E-06 2.3E-11 81.5 11.2 72 144-216 2-75 (236)
178 PF02562 PhoH: PhoH-like prote 98.5 8.9E-07 1.9E-11 78.5 9.4 142 142-309 3-155 (205)
179 KOG1803 DNA helicase [Replicat 98.3 2.7E-06 5.8E-11 84.7 9.4 66 142-215 184-250 (649)
180 COG3421 Uncharacterized protei 98.3 1.2E-05 2.7E-10 79.7 12.9 144 163-313 2-168 (812)
181 KOG1802 RNA helicase nonsense 98.3 2.2E-05 4.8E-10 78.8 14.6 77 135-218 402-478 (935)
182 PF13872 AAA_34: P-loop contai 98.3 1.6E-05 3.6E-10 73.7 12.9 160 143-316 37-226 (303)
183 PF09848 DUF2075: Uncharacteri 98.2 8.2E-06 1.8E-10 80.2 10.3 108 160-296 3-117 (352)
184 PRK10875 recD exonuclease V su 98.2 1.7E-05 3.6E-10 82.6 12.7 142 145-309 154-301 (615)
185 KOG1001 Helicase-like transcri 98.2 4.9E-06 1.1E-10 86.8 8.4 93 375-467 540-634 (674)
186 TIGR01447 recD exodeoxyribonuc 98.2 2.4E-05 5.2E-10 81.3 13.4 142 146-309 148-295 (586)
187 PRK10536 hypothetical protein; 98.1 5.8E-05 1.3E-09 68.9 13.7 147 139-306 55-209 (262)
188 PF12340 DUF3638: Protein of u 98.1 6.3E-05 1.4E-09 67.4 12.4 128 122-259 4-144 (229)
189 PF13245 AAA_19: Part of AAA d 98.1 2.3E-05 5E-10 57.8 7.7 60 151-214 2-62 (76)
190 TIGR01448 recD_rel helicase, p 98.0 5.7E-05 1.2E-09 80.9 13.5 126 142-309 322-452 (720)
191 TIGR00376 DNA helicase, putati 98.0 6.4E-05 1.4E-09 79.2 12.7 67 142-216 156-223 (637)
192 PF13307 Helicase_C_2: Helicas 97.9 8E-06 1.7E-10 71.0 3.8 79 373-453 8-92 (167)
193 COG1875 NYN ribonuclease and A 97.8 0.0002 4.4E-09 67.5 10.6 144 138-307 223-385 (436)
194 KOG1805 DNA replication helica 97.8 0.00013 2.9E-09 76.6 9.8 141 126-282 656-809 (1100)
195 KOG1132 Helicase of the DEAD s 97.8 0.00025 5.4E-09 73.9 11.7 77 376-453 563-656 (945)
196 PRK13889 conjugal transfer rel 97.7 0.00032 7E-09 76.6 12.2 123 143-309 346-470 (988)
197 TIGR02768 TraA_Ti Ti-type conj 97.7 0.00044 9.4E-09 74.5 12.3 122 142-307 351-474 (744)
198 PRK04296 thymidine kinase; Pro 97.6 0.00013 2.8E-09 64.9 5.9 36 159-202 3-38 (190)
199 PF13401 AAA_22: AAA domain; P 97.6 0.00031 6.8E-09 58.3 7.8 19 157-175 3-21 (131)
200 PRK12723 flagellar biosynthesi 97.5 0.0011 2.5E-08 65.1 12.5 130 159-321 175-309 (388)
201 PRK13826 Dtr system oriT relax 97.5 0.0019 4.1E-08 71.3 14.5 124 142-309 380-505 (1102)
202 PF00580 UvrD-helicase: UvrD/R 97.5 0.00039 8.5E-09 67.3 8.2 123 144-279 1-125 (315)
203 cd00009 AAA The AAA+ (ATPases 97.4 0.0016 3.5E-08 54.8 11.0 17 158-174 19-35 (151)
204 PRK06526 transposase; Provisio 97.4 0.00076 1.7E-08 62.7 8.6 23 153-175 93-115 (254)
205 PRK08181 transposase; Validate 97.3 0.0035 7.7E-08 58.6 12.4 121 145-315 89-214 (269)
206 PF00448 SRP54: SRP54-type pro 97.3 0.00098 2.1E-08 59.4 8.3 54 268-321 82-136 (196)
207 TIGR02760 TraI_TIGR conjugativ 97.3 0.03 6.6E-07 66.6 22.7 237 143-424 429-686 (1960)
208 PRK14974 cell division protein 97.3 0.0024 5.1E-08 61.7 11.1 55 268-322 221-276 (336)
209 PF05970 PIF1: PIF1-like helic 97.3 0.0011 2.3E-08 65.5 8.9 67 144-218 2-76 (364)
210 KOG0383 Predicted helicase [Ge 97.3 4.6E-05 1E-09 78.8 -1.0 64 373-437 630-696 (696)
211 PRK14722 flhF flagellar biosyn 97.2 0.0023 5E-08 62.5 10.2 128 158-321 137-269 (374)
212 PRK11889 flhF flagellar biosyn 97.2 0.0052 1.1E-07 59.8 11.9 129 159-322 242-375 (436)
213 PRK05703 flhF flagellar biosyn 97.2 0.0059 1.3E-07 61.3 12.8 128 158-321 221-354 (424)
214 smart00382 AAA ATPases associa 97.1 0.0011 2.5E-08 55.3 5.8 41 158-206 2-42 (148)
215 PRK05642 DNA replication initi 97.0 0.0017 3.7E-08 59.8 7.0 44 269-312 97-141 (234)
216 PF14617 CMS1: U3-containing 9 97.0 0.0019 4.1E-08 59.2 6.9 86 193-280 125-212 (252)
217 TIGR01075 uvrD DNA helicase II 96.9 0.0054 1.2E-07 66.4 11.0 71 142-218 3-73 (715)
218 PRK08084 DNA replication initi 96.9 0.0027 5.8E-08 58.6 7.2 44 270-313 98-144 (235)
219 PRK11773 uvrD DNA-dependent he 96.9 0.0055 1.2E-07 66.3 10.7 70 143-218 9-78 (721)
220 smart00492 HELICc3 helicase su 96.9 0.0058 1.3E-07 51.2 8.4 67 387-453 4-79 (141)
221 KOG1131 RNA polymerase II tran 96.9 0.0057 1.2E-07 60.4 9.3 81 375-455 531-625 (755)
222 COG2805 PilT Tfp pilus assembl 96.9 0.02 4.4E-07 53.0 12.2 53 115-186 100-152 (353)
223 KOG0298 DEAD box-containing he 96.9 0.0039 8.6E-08 67.7 8.6 154 157-316 373-556 (1394)
224 PRK06893 DNA replication initi 96.9 0.0032 6.9E-08 57.9 7.1 45 268-312 90-136 (229)
225 PRK11054 helD DNA helicase IV; 96.8 0.015 3.3E-07 62.0 12.2 72 141-218 194-265 (684)
226 TIGR03420 DnaA_homol_Hda DnaA 96.7 0.0066 1.4E-07 55.7 8.5 19 157-175 37-55 (226)
227 PF13173 AAA_14: AAA domain 96.7 0.021 4.6E-07 47.1 10.2 38 269-309 61-98 (128)
228 PRK06921 hypothetical protein; 96.7 0.037 8E-07 52.0 12.8 43 158-208 117-159 (266)
229 smart00491 HELICc2 helicase su 96.7 0.0071 1.5E-07 50.7 7.2 67 387-453 4-80 (142)
230 PTZ00112 origin recognition co 96.6 0.034 7.3E-07 59.4 13.2 22 161-183 784-805 (1164)
231 PRK14712 conjugal transfer nic 96.6 0.015 3.3E-07 66.5 11.5 65 143-211 835-901 (1623)
232 cd01120 RecA-like_NTPases RecA 96.6 0.031 6.7E-07 48.0 11.3 36 161-204 2-37 (165)
233 PRK12727 flagellar biosynthesi 96.6 0.046 1E-06 55.5 13.7 129 157-321 349-481 (559)
234 PRK08727 hypothetical protein; 96.6 0.004 8.8E-08 57.3 5.9 47 268-314 92-140 (233)
235 PRK06731 flhF flagellar biosyn 96.6 0.031 6.6E-07 52.3 11.6 130 158-322 75-209 (270)
236 PRK07952 DNA replication prote 96.6 0.027 5.8E-07 51.9 11.1 48 267-314 160-209 (244)
237 PHA02533 17 large terminase pr 96.6 0.019 4.1E-07 59.3 11.0 149 143-310 59-210 (534)
238 cd01124 KaiC KaiC is a circadi 96.6 0.03 6.6E-07 49.5 11.2 49 161-218 2-50 (187)
239 PRK05707 DNA polymerase III su 96.6 0.018 3.9E-07 55.7 10.3 42 144-186 4-49 (328)
240 PRK13709 conjugal transfer nic 96.6 0.02 4.3E-07 66.5 12.1 66 142-211 966-1033(1747)
241 PRK08116 hypothetical protein; 96.5 0.048 1E-06 51.3 12.7 48 268-315 177-226 (268)
242 KOG0989 Replication factor C, 96.5 0.014 3.1E-07 54.1 8.5 45 265-310 125-169 (346)
243 PRK08769 DNA polymerase III su 96.5 0.034 7.3E-07 53.4 11.5 144 142-310 3-153 (319)
244 PRK12377 putative replication 96.5 0.026 5.5E-07 52.2 10.3 45 158-211 101-145 (248)
245 COG1484 DnaC DNA replication p 96.4 0.012 2.7E-07 54.7 7.8 49 157-214 104-152 (254)
246 COG1444 Predicted P-loop ATPas 96.3 0.043 9.4E-07 57.9 12.1 156 128-310 199-356 (758)
247 PHA03333 putative ATPase subun 96.3 0.061 1.3E-06 55.9 12.9 153 140-310 166-332 (752)
248 COG4962 CpaF Flp pilus assembl 96.3 0.02 4.4E-07 54.3 8.7 60 140-208 154-214 (355)
249 PRK12724 flagellar biosynthesi 96.3 0.047 1E-06 54.0 11.6 125 160-321 225-356 (432)
250 PRK08903 DnaA regulatory inact 96.3 0.019 4.2E-07 52.7 8.6 43 269-312 90-133 (227)
251 PRK12422 chromosomal replicati 96.3 0.021 4.5E-07 57.8 9.4 50 268-317 201-252 (445)
252 PRK06835 DNA replication prote 96.3 0.013 2.9E-07 56.5 7.7 45 157-210 182-226 (329)
253 PRK14087 dnaA chromosomal repl 96.3 0.033 7.1E-07 56.5 10.6 109 160-314 143-253 (450)
254 PF05621 TniB: Bacterial TniB 96.3 0.019 4E-07 53.9 8.1 34 268-301 144-179 (302)
255 PRK10919 ATP-dependent DNA hel 96.2 0.014 2.9E-07 62.6 8.1 70 143-218 2-71 (672)
256 COG1419 FlhF Flagellar GTP-bin 96.2 0.027 5.8E-07 54.9 9.2 132 158-323 203-337 (407)
257 TIGR02785 addA_Gpos recombinat 96.2 0.031 6.7E-07 64.1 11.2 123 144-280 2-126 (1232)
258 PF00004 AAA: ATPase family as 96.2 0.062 1.3E-06 44.2 10.3 15 161-175 1-15 (132)
259 COG2256 MGS1 ATPase related to 96.2 0.028 6.2E-07 54.2 8.9 16 160-175 50-65 (436)
260 COG1435 Tdk Thymidine kinase [ 96.2 0.014 3.1E-07 50.7 6.2 103 161-297 7-109 (201)
261 PRK07003 DNA polymerase III su 96.2 0.091 2E-06 55.6 13.2 39 268-307 118-156 (830)
262 PTZ00293 thymidine kinase; Pro 96.1 0.039 8.5E-07 49.2 9.2 39 158-204 4-42 (211)
263 PRK00771 signal recognition pa 96.1 0.044 9.6E-07 55.0 10.6 52 270-321 176-228 (437)
264 PRK11331 5-methylcytosine-spec 96.1 0.02 4.4E-07 56.9 8.1 32 144-175 180-211 (459)
265 PF13871 Helicase_C_4: Helicas 96.1 0.0093 2E-07 55.5 5.4 54 415-468 52-113 (278)
266 PRK07994 DNA polymerase III su 96.1 0.061 1.3E-06 56.6 11.9 38 268-306 118-155 (647)
267 TIGR01074 rep ATP-dependent DN 96.1 0.035 7.5E-07 59.9 10.6 70 144-219 2-71 (664)
268 TIGR01425 SRP54_euk signal rec 96.1 0.057 1.2E-06 53.8 11.1 43 160-210 102-146 (429)
269 PF13177 DNA_pol3_delta2: DNA 96.1 0.052 1.1E-06 46.8 9.6 43 268-311 101-143 (162)
270 TIGR02760 TraI_TIGR conjugativ 96.1 0.036 7.8E-07 66.0 11.2 64 142-211 1018-1085(1960)
271 PF03354 Terminase_1: Phage Te 96.1 0.021 4.6E-07 58.7 8.3 152 146-309 1-163 (477)
272 PHA02544 44 clamp loader, smal 96.1 0.03 6.6E-07 54.2 9.0 39 269-307 100-138 (316)
273 PRK12402 replication factor C 96.1 0.05 1.1E-06 53.3 10.6 40 267-307 123-162 (337)
274 PRK14723 flhF flagellar biosyn 96.1 0.051 1.1E-06 57.9 11.0 66 252-321 250-317 (767)
275 PRK14088 dnaA chromosomal repl 96.0 0.031 6.7E-07 56.6 9.2 51 269-319 194-246 (440)
276 PF00308 Bac_DnaA: Bacterial d 96.0 0.01 2.3E-07 54.0 5.3 49 267-315 95-145 (219)
277 PF05127 Helicase_RecD: Helica 96.0 0.0026 5.6E-08 55.1 1.1 123 162-310 1-123 (177)
278 PRK00149 dnaA chromosomal repl 96.0 0.042 9.1E-07 56.1 10.0 47 269-315 211-259 (450)
279 cd00561 CobA_CobO_BtuR ATP:cor 96.0 0.21 4.5E-06 42.6 12.4 54 266-319 92-147 (159)
280 PRK12726 flagellar biosynthesi 96.0 0.053 1.1E-06 52.8 9.8 18 158-175 206-223 (407)
281 PRK13833 conjugal transfer pro 96.0 0.031 6.8E-07 53.7 8.2 65 134-206 121-186 (323)
282 PLN03025 replication factor C 95.9 0.12 2.6E-06 50.1 12.5 41 268-310 98-138 (319)
283 KOG0991 Replication factor C, 95.9 0.013 2.9E-07 52.0 4.8 39 267-306 111-149 (333)
284 PRK06995 flhF flagellar biosyn 95.8 0.1 2.2E-06 53.0 11.6 19 158-176 256-274 (484)
285 PRK06964 DNA polymerase III su 95.8 0.11 2.3E-06 50.6 11.3 43 267-310 130-172 (342)
286 PRK05580 primosome assembly pr 95.8 0.12 2.5E-06 55.6 12.7 73 375-448 191-264 (679)
287 PRK09183 transposase/IS protei 95.8 0.059 1.3E-06 50.4 9.2 21 155-175 99-119 (259)
288 PRK14086 dnaA chromosomal repl 95.8 0.025 5.5E-07 58.6 7.3 49 267-315 375-425 (617)
289 PRK10917 ATP-dependent DNA hel 95.8 0.04 8.7E-07 59.2 9.1 74 375-448 311-389 (681)
290 PRK14958 DNA polymerase III su 95.8 0.088 1.9E-06 54.2 11.2 39 268-307 118-156 (509)
291 KOG1133 Helicase of the DEAD s 95.8 0.67 1.4E-05 48.0 16.9 163 269-453 526-720 (821)
292 COG3973 Superfamily I DNA and 95.8 0.034 7.5E-07 56.3 7.8 88 130-219 192-285 (747)
293 COG0470 HolB ATPase involved i 95.8 0.078 1.7E-06 51.5 10.4 40 267-307 107-146 (325)
294 PRK07764 DNA polymerase III su 95.7 0.088 1.9E-06 57.3 11.5 40 267-307 118-157 (824)
295 TIGR01073 pcrA ATP-dependent D 95.7 0.055 1.2E-06 58.9 10.1 72 142-219 3-74 (726)
296 TIGR02881 spore_V_K stage V sp 95.7 0.02 4.3E-07 53.8 5.9 17 159-175 43-59 (261)
297 TIGR00064 ftsY signal recognit 95.7 0.32 7E-06 45.8 13.9 55 268-322 153-214 (272)
298 cd01122 GP4d_helicase GP4d_hel 95.7 0.045 9.8E-07 51.7 8.4 40 155-201 27-66 (271)
299 PF05496 RuvB_N: Holliday junc 95.7 0.015 3.3E-07 52.0 4.6 16 160-175 52-67 (233)
300 PRK12323 DNA polymerase III su 95.7 0.078 1.7E-06 55.2 10.2 42 267-309 122-163 (700)
301 TIGR01547 phage_term_2 phage t 95.7 0.057 1.2E-06 54.2 9.3 144 161-322 4-152 (396)
302 PRK00411 cdc6 cell division co 95.7 0.071 1.5E-06 53.5 10.0 17 159-175 56-72 (394)
303 PRK07993 DNA polymerase III su 95.7 0.14 3.1E-06 49.7 11.6 138 144-310 3-148 (334)
304 TIGR00362 DnaA chromosomal rep 95.7 0.064 1.4E-06 54.0 9.6 47 269-315 199-247 (405)
305 PRK13342 recombination factor 95.6 0.14 3E-06 51.7 11.8 16 160-175 38-53 (413)
306 TIGR00708 cobA cob(I)alamin ad 95.6 0.17 3.6E-06 43.8 10.5 53 267-319 95-149 (173)
307 TIGR00595 priA primosomal prot 95.6 0.1 2.3E-06 53.8 11.0 73 375-448 26-99 (505)
308 PRK05986 cob(I)alamin adenolsy 95.6 0.092 2E-06 46.0 9.0 146 157-320 21-168 (191)
309 PRK06645 DNA polymerase III su 95.6 0.15 3.2E-06 52.4 11.8 17 160-176 45-61 (507)
310 PRK10867 signal recognition pa 95.5 0.18 3.8E-06 50.7 12.0 16 160-175 102-117 (433)
311 PRK14960 DNA polymerase III su 95.5 0.14 3.1E-06 53.5 11.5 39 268-307 117-155 (702)
312 PRK09111 DNA polymerase III su 95.5 0.11 2.3E-06 54.6 10.9 40 267-307 130-169 (598)
313 PRK11034 clpA ATP-dependent Cl 95.5 0.2 4.3E-06 54.1 13.1 18 158-175 207-224 (758)
314 PRK06090 DNA polymerase III su 95.5 0.23 5E-06 47.7 12.2 44 266-310 105-148 (319)
315 PRK08699 DNA polymerase III su 95.5 0.17 3.8E-06 48.9 11.4 41 267-308 111-151 (325)
316 TIGR00959 ffh signal recogniti 95.5 0.18 3.9E-06 50.5 11.7 16 160-175 101-116 (428)
317 PRK08533 flagellar accessory p 95.4 0.19 4.2E-06 46.0 11.2 53 157-218 23-75 (230)
318 COG2909 MalT ATP-dependent tra 95.4 0.039 8.5E-07 58.3 7.1 42 270-311 130-171 (894)
319 PRK14949 DNA polymerase III su 95.4 0.13 2.8E-06 55.6 11.0 38 268-306 118-155 (944)
320 KOG0741 AAA+-type ATPase [Post 95.4 0.11 2.4E-06 51.9 9.8 29 158-188 256-284 (744)
321 PRK14961 DNA polymerase III su 95.4 0.13 2.8E-06 50.9 10.5 40 267-307 117-156 (363)
322 PF05729 NACHT: NACHT domain 95.4 0.16 3.4E-06 43.7 10.0 38 272-309 84-129 (166)
323 PRK06871 DNA polymerase III su 95.4 0.23 4.9E-06 47.9 11.7 43 267-310 105-147 (325)
324 CHL00181 cbbX CbbX; Provisiona 95.3 0.039 8.5E-07 52.4 6.4 19 158-176 59-77 (287)
325 PRK14952 DNA polymerase III su 95.3 0.088 1.9E-06 54.9 9.4 40 267-307 116-155 (584)
326 PRK07940 DNA polymerase III su 95.3 0.29 6.3E-06 48.7 12.7 44 267-312 115-158 (394)
327 TIGR03499 FlhF flagellar biosy 95.3 0.086 1.9E-06 50.0 8.6 17 159-175 195-211 (282)
328 TIGR02928 orc1/cdc6 family rep 95.3 0.1 2.2E-06 51.8 9.5 24 159-183 41-64 (365)
329 PRK09112 DNA polymerase III su 95.3 0.14 3.1E-06 50.0 10.3 41 267-308 139-179 (351)
330 PRK14969 DNA polymerase III su 95.3 0.16 3.5E-06 52.6 11.2 40 267-307 117-156 (527)
331 PRK11823 DNA repair protein Ra 95.3 0.093 2E-06 53.2 9.2 53 157-218 79-131 (446)
332 PRK04195 replication factor C 95.2 0.09 2E-06 54.2 9.2 18 158-175 39-56 (482)
333 PHA00729 NTP-binding motif con 95.2 0.1 2.3E-06 47.1 8.4 75 246-320 59-138 (226)
334 PRK07471 DNA polymerase III su 95.2 0.23 4.9E-06 48.9 11.5 44 266-310 138-181 (365)
335 PRK08939 primosomal protein Dn 95.2 0.1 2.2E-06 50.1 8.8 17 158-174 156-172 (306)
336 PRK14964 DNA polymerase III su 95.2 0.26 5.6E-06 50.3 12.0 40 267-307 114-153 (491)
337 TIGR02639 ClpA ATP-dependent C 95.2 0.43 9.4E-06 51.9 14.6 18 158-175 203-220 (731)
338 TIGR03877 thermo_KaiC_1 KaiC d 95.2 0.086 1.9E-06 48.7 8.1 53 157-218 20-72 (237)
339 PRK13894 conjugal transfer ATP 95.2 0.075 1.6E-06 51.2 7.9 68 131-206 122-190 (319)
340 PRK14956 DNA polymerase III su 95.2 0.088 1.9E-06 53.1 8.5 16 161-176 43-58 (484)
341 PF05876 Terminase_GpA: Phage 95.1 0.05 1.1E-06 56.7 7.0 126 143-282 16-147 (557)
342 TIGR00643 recG ATP-dependent D 95.1 0.08 1.7E-06 56.5 8.6 74 375-448 285-363 (630)
343 PRK14962 DNA polymerase III su 95.1 0.47 1E-05 48.4 13.6 16 161-176 39-54 (472)
344 PRK14721 flhF flagellar biosyn 95.1 0.41 8.9E-06 47.8 12.7 18 158-175 191-208 (420)
345 PRK13341 recombination factor 95.1 0.36 7.7E-06 52.0 13.1 40 269-313 109-148 (725)
346 COG0593 DnaA ATPase involved i 95.0 0.14 3.1E-06 50.5 9.2 48 269-316 175-224 (408)
347 TIGR02782 TrbB_P P-type conjug 95.0 0.11 2.3E-06 49.8 8.1 66 133-206 108-174 (299)
348 TIGR02880 cbbX_cfxQ probable R 94.9 0.088 1.9E-06 50.0 7.5 18 158-175 58-75 (284)
349 PHA03368 DNA packaging termina 94.9 0.21 4.5E-06 52.0 10.4 133 158-310 254-390 (738)
350 PRK14873 primosome assembly pr 94.9 0.16 3.6E-06 53.9 10.1 93 350-450 171-265 (665)
351 PRK14965 DNA polymerase III su 94.9 0.12 2.7E-06 54.2 9.1 40 267-307 117-156 (576)
352 TIGR03346 chaperone_ClpB ATP-d 94.9 0.47 1E-05 52.6 14.0 17 159-175 195-211 (852)
353 PRK14957 DNA polymerase III su 94.9 0.38 8.3E-06 49.8 12.4 40 267-307 117-156 (546)
354 cd01121 Sms Sms (bacterial rad 94.9 0.16 3.5E-06 50.0 9.3 53 157-218 81-133 (372)
355 PF01695 IstB_IS21: IstB-like 94.8 0.072 1.6E-06 46.7 6.1 49 153-210 42-90 (178)
356 KOG0331 ATP-dependent RNA heli 94.8 0.23 5E-06 50.3 10.3 91 373-467 164-272 (519)
357 COG2804 PulE Type II secretory 94.8 0.18 3.8E-06 50.7 9.3 41 144-185 242-284 (500)
358 TIGR03015 pepcterm_ATPase puta 94.8 0.39 8.4E-06 45.2 11.5 32 144-175 24-60 (269)
359 COG1198 PriA Primosomal protei 94.8 0.11 2.4E-06 55.2 8.3 97 344-448 222-319 (730)
360 TIGR00580 mfd transcription-re 94.8 0.22 4.8E-06 55.0 10.9 74 375-448 501-579 (926)
361 COG5008 PilU Tfp pilus assembl 94.7 0.79 1.7E-05 42.0 12.2 22 160-182 129-150 (375)
362 COG1474 CDC6 Cdc6-related prot 94.7 0.76 1.6E-05 45.3 13.4 30 267-297 121-150 (366)
363 TIGR00678 holB DNA polymerase 94.7 0.53 1.1E-05 41.7 11.5 38 267-305 94-131 (188)
364 PRK14950 DNA polymerase III su 94.7 0.31 6.6E-06 51.5 11.4 41 267-309 118-158 (585)
365 PRK13851 type IV secretion sys 94.7 0.053 1.2E-06 52.7 5.3 45 154-207 158-202 (344)
366 PRK10416 signal recognition pa 94.7 0.76 1.6E-05 44.4 13.2 55 268-322 195-256 (318)
367 COG1222 RPT1 ATP-dependent 26S 94.7 0.4 8.8E-06 45.8 10.8 17 159-175 186-202 (406)
368 PRK14951 DNA polymerase III su 94.6 0.25 5.4E-06 51.9 10.5 40 267-307 122-161 (618)
369 PRK14963 DNA polymerase III su 94.6 0.17 3.8E-06 52.0 9.2 24 161-185 39-62 (504)
370 PF02572 CobA_CobO_BtuR: ATP:c 94.6 0.48 1E-05 41.0 10.4 54 266-319 93-148 (172)
371 TIGR02525 plasmid_TraJ plasmid 94.6 0.1 2.2E-06 51.3 7.1 28 157-185 148-175 (372)
372 KOG0701 dsRNA-specific nucleas 94.5 0.028 6E-07 63.9 3.4 92 377-468 295-398 (1606)
373 TIGR02524 dot_icm_DotB Dot/Icm 94.5 0.11 2.4E-06 51.0 7.1 26 157-183 133-158 (358)
374 COG3972 Superfamily I DNA and 94.5 0.11 2.4E-06 51.4 6.9 130 145-281 164-307 (660)
375 PRK05563 DNA polymerase III su 94.5 0.25 5.4E-06 51.7 10.1 42 267-310 117-158 (559)
376 PF06745 KaiC: KaiC; InterPro 94.4 0.15 3.3E-06 46.7 7.6 54 157-218 18-71 (226)
377 PRK14959 DNA polymerase III su 94.4 0.36 7.8E-06 50.5 10.8 17 160-176 40-56 (624)
378 PRK13900 type IV secretion sys 94.4 0.14 3.1E-06 49.6 7.5 43 155-206 157-199 (332)
379 PHA03372 DNA packaging termina 94.3 0.72 1.6E-05 47.5 12.5 129 158-310 202-337 (668)
380 cd00984 DnaB_C DnaB helicase C 94.3 0.26 5.7E-06 45.6 9.0 46 157-209 12-60 (242)
381 PRK08691 DNA polymerase III su 94.3 0.19 4.1E-06 53.0 8.5 40 267-307 117-156 (709)
382 PF03969 AFG1_ATPase: AFG1-lik 94.2 0.52 1.1E-05 46.3 11.2 47 268-315 126-173 (362)
383 cd03115 SRP The signal recogni 94.2 1.6 3.5E-05 37.9 13.4 54 268-321 81-135 (173)
384 TIGR03881 KaiC_arch_4 KaiC dom 94.2 0.35 7.5E-06 44.4 9.6 52 157-217 19-70 (229)
385 PRK14955 DNA polymerase III su 94.2 0.47 1E-05 47.6 11.1 42 266-309 124-165 (397)
386 KOG0738 AAA+-type ATPase [Post 94.2 0.45 9.8E-06 46.0 10.1 16 159-174 246-261 (491)
387 KOG1133 Helicase of the DEAD s 94.2 0.071 1.5E-06 54.8 5.0 43 142-184 14-60 (821)
388 TIGR03345 VI_ClpV1 type VI sec 94.2 0.75 1.6E-05 50.7 13.3 28 148-175 192-225 (852)
389 PRK10865 protein disaggregatio 94.1 0.79 1.7E-05 50.7 13.5 17 159-175 200-216 (857)
390 PRK00440 rfc replication facto 94.1 0.68 1.5E-05 44.8 11.9 38 269-307 102-139 (319)
391 PRK07414 cob(I)yrinic acid a,c 94.1 1 2.2E-05 39.0 11.4 53 267-319 113-167 (178)
392 CHL00095 clpC Clp protease ATP 94.1 0.73 1.6E-05 50.8 13.2 18 158-175 200-217 (821)
393 PRK10689 transcription-repair 94.1 0.22 4.7E-06 56.5 9.2 75 374-448 649-728 (1147)
394 PRK06904 replicative DNA helic 94.1 0.62 1.3E-05 47.7 11.7 114 158-282 221-347 (472)
395 COG1110 Reverse gyrase [DNA re 94.0 0.14 3E-06 55.3 6.9 61 374-434 125-191 (1187)
396 COG2255 RuvB Holliday junction 94.0 0.15 3.2E-06 47.2 6.2 16 160-175 54-69 (332)
397 TIGR03600 phage_DnaB phage rep 93.8 0.38 8.3E-06 48.7 9.8 39 156-201 192-230 (421)
398 PRK06067 flagellar accessory p 93.8 1.1 2.3E-05 41.3 12.0 53 157-218 24-76 (234)
399 KOG0739 AAA+-type ATPase [Post 93.8 1.5 3.3E-05 40.9 12.3 124 153-328 156-296 (439)
400 COG0552 FtsY Signal recognitio 93.7 1.4 2.9E-05 42.1 12.2 129 161-321 142-280 (340)
401 PRK14948 DNA polymerase III su 93.7 0.58 1.3E-05 49.5 11.0 25 160-185 40-64 (620)
402 KOG2028 ATPase related to the 93.6 0.29 6.3E-06 46.8 7.7 16 160-175 164-179 (554)
403 PRK08451 DNA polymerase III su 93.6 0.44 9.6E-06 49.1 9.7 40 267-307 115-154 (535)
404 cd01130 VirB11-like_ATPase Typ 93.5 0.18 3.9E-06 44.6 6.1 31 144-174 10-41 (186)
405 PRK13764 ATPase; Provisional 93.5 0.18 3.9E-06 52.6 6.7 27 157-184 256-282 (602)
406 TIGR03689 pup_AAA proteasome A 93.5 0.49 1.1E-05 48.5 9.7 18 158-175 216-233 (512)
407 COG2109 BtuR ATP:corrinoid ade 93.4 0.79 1.7E-05 39.7 9.3 54 267-320 120-175 (198)
408 cd01129 PulE-GspE PulE/GspE Th 93.4 0.19 4.2E-06 47.1 6.3 38 145-183 65-104 (264)
409 PRK07399 DNA polymerase III su 93.4 0.77 1.7E-05 44.3 10.5 52 255-309 111-162 (314)
410 KOG1513 Nuclear helicase MOP-3 93.3 0.083 1.8E-06 55.1 3.8 151 144-309 265-453 (1300)
411 PF03796 DnaB_C: DnaB-like hel 93.2 0.38 8.3E-06 45.0 8.1 39 157-202 18-56 (259)
412 PRK10436 hypothetical protein; 93.2 0.18 3.8E-06 51.2 6.0 38 145-183 203-242 (462)
413 cd01126 TraG_VirD4 The TraG/Tr 93.2 0.065 1.4E-06 53.5 3.0 49 160-218 1-49 (384)
414 PRK06305 DNA polymerase III su 93.0 1.1 2.3E-05 45.7 11.4 39 267-306 119-157 (451)
415 PF01443 Viral_helicase1: Vira 93.0 0.11 2.5E-06 47.7 4.1 14 161-174 1-14 (234)
416 PF12846 AAA_10: AAA-like doma 92.9 0.14 3E-06 49.1 4.7 43 158-208 1-43 (304)
417 PF02534 T4SS-DNA_transf: Type 92.9 0.079 1.7E-06 54.5 3.2 50 159-218 45-94 (469)
418 PRK07004 replicative DNA helic 92.9 0.57 1.2E-05 47.8 9.2 18 158-175 213-230 (460)
419 PRK08840 replicative DNA helic 92.9 1 2.2E-05 46.0 11.0 19 157-175 216-234 (464)
420 PRK14954 DNA polymerase III su 92.9 0.78 1.7E-05 48.4 10.4 41 266-307 124-164 (620)
421 PF01637 Arch_ATPase: Archaeal 92.9 0.21 4.5E-06 45.7 5.7 55 252-310 105-165 (234)
422 PF13555 AAA_29: P-loop contai 92.8 0.14 3.1E-06 35.7 3.3 25 158-184 23-47 (62)
423 PRK05896 DNA polymerase III su 92.8 0.17 3.8E-06 52.6 5.4 39 268-307 118-156 (605)
424 COG0513 SrmB Superfamily II DN 92.8 0.36 7.7E-06 50.1 7.8 68 377-448 102-180 (513)
425 COG1219 ClpX ATP-dependent pro 92.8 0.095 2.1E-06 49.1 3.1 27 157-185 96-122 (408)
426 COG0630 VirB11 Type IV secreto 92.8 0.3 6.5E-06 47.0 6.7 55 143-206 127-182 (312)
427 TIGR01420 pilT_fam pilus retra 92.7 0.33 7.1E-06 47.6 7.1 43 157-206 121-163 (343)
428 TIGR03819 heli_sec_ATPase heli 92.7 0.42 9.1E-06 46.6 7.6 64 132-206 153-217 (340)
429 PRK09087 hypothetical protein; 92.7 0.32 6.9E-06 44.5 6.4 42 271-314 89-131 (226)
430 PRK08006 replicative DNA helic 92.6 1.5 3.3E-05 44.8 11.8 18 158-175 224-241 (471)
431 PRK08058 DNA polymerase III su 92.6 2.9 6.3E-05 40.7 13.4 41 267-308 108-148 (329)
432 PRK08506 replicative DNA helic 92.6 0.83 1.8E-05 46.8 10.0 49 157-214 191-239 (472)
433 PRK03992 proteasome-activating 92.5 0.43 9.3E-06 47.6 7.7 17 159-175 166-182 (389)
434 PRK07133 DNA polymerase III su 92.5 0.78 1.7E-05 49.0 9.7 40 267-307 116-155 (725)
435 PF00437 T2SE: Type II/IV secr 92.4 0.19 4.1E-06 47.5 4.8 43 156-206 125-167 (270)
436 TIGR01243 CDC48 AAA family ATP 92.4 1 2.2E-05 49.2 10.9 18 157-174 211-228 (733)
437 TIGR02655 circ_KaiC circadian 92.4 0.92 2E-05 46.8 10.1 60 150-218 250-314 (484)
438 KOG2228 Origin recognition com 92.4 1.4 3E-05 42.0 10.1 56 255-310 123-181 (408)
439 PF03237 Terminase_6: Terminas 92.4 1.7 3.7E-05 42.8 12.0 146 162-325 1-154 (384)
440 PRK04841 transcriptional regul 92.3 0.7 1.5E-05 51.9 10.0 43 269-311 121-163 (903)
441 PRK00080 ruvB Holliday junctio 92.3 0.4 8.7E-06 46.7 7.1 17 159-175 52-68 (328)
442 TIGR00635 ruvB Holliday juncti 92.3 0.26 5.5E-06 47.5 5.6 17 159-175 31-47 (305)
443 PRK09376 rho transcription ter 92.2 1.8 3.9E-05 42.6 11.1 95 81-175 71-186 (416)
444 PRK13897 type IV secretion sys 92.2 0.11 2.4E-06 54.4 3.1 50 159-218 159-208 (606)
445 PRK14971 DNA polymerase III su 92.2 0.52 1.1E-05 49.9 8.1 42 266-309 118-159 (614)
446 PHA00012 I assembly protein 92.0 2 4.3E-05 40.9 10.8 54 267-321 79-138 (361)
447 PRK14953 DNA polymerase III su 92.0 0.89 1.9E-05 46.7 9.3 41 267-309 117-157 (486)
448 PRK05748 replicative DNA helic 91.9 1.3 2.9E-05 45.2 10.5 50 157-214 202-251 (448)
449 PRK05973 replicative DNA helic 91.9 0.39 8.4E-06 44.0 5.9 66 143-218 50-115 (237)
450 KOG2004 Mitochondrial ATP-depe 91.9 1.6 3.4E-05 45.8 10.6 39 242-283 480-519 (906)
451 cd01128 rho_factor Transcripti 91.8 0.36 7.8E-06 44.8 5.7 18 156-173 14-31 (249)
452 TIGR02533 type_II_gspE general 91.8 0.29 6.3E-06 50.2 5.6 37 145-182 227-265 (486)
453 TIGR02788 VirB11 P-type DNA tr 91.8 0.27 5.8E-06 47.4 5.1 20 155-174 141-160 (308)
454 TIGR02538 type_IV_pilB type IV 91.7 0.32 7E-06 51.0 6.0 38 145-183 301-340 (564)
455 COG4185 Uncharacterized protei 91.7 1 2.2E-05 38.0 7.5 17 161-177 5-21 (187)
456 cd01131 PilT Pilus retraction 91.7 0.27 5.9E-06 44.0 4.7 22 161-183 4-25 (198)
457 COG1200 RecG RecG-like helicas 91.7 0.5 1.1E-05 49.1 7.0 74 375-448 312-390 (677)
458 TIGR00665 DnaB replicative DNA 91.7 1.4 3E-05 44.9 10.4 38 157-201 194-231 (434)
459 KOG0347 RNA helicase [RNA proc 91.6 0.41 8.8E-06 48.2 6.0 69 376-448 265-346 (731)
460 PRK06647 DNA polymerase III su 91.6 0.62 1.3E-05 48.7 7.8 16 161-176 41-56 (563)
461 COG3267 ExeA Type II secretory 91.5 1.6 3.6E-05 39.8 9.3 22 155-176 47-69 (269)
462 KOG0742 AAA+-type ATPase [Post 91.5 0.16 3.4E-06 49.2 3.1 16 159-174 385-400 (630)
463 KOG0741 AAA+-type ATPase [Post 91.5 0.8 1.7E-05 46.1 7.8 69 126-204 494-574 (744)
464 PF06733 DEAD_2: DEAD_2; Inte 91.4 0.093 2E-06 45.9 1.4 44 240-283 114-159 (174)
465 PHA00350 putative assembly pro 91.4 1.7 3.6E-05 43.1 10.1 17 161-177 4-20 (399)
466 COG4626 Phage terminase-like p 91.4 1.4 3.1E-05 44.9 9.7 145 143-308 61-223 (546)
467 TIGR02012 tigrfam_recA protein 91.4 0.42 9E-06 45.9 5.8 43 157-207 54-96 (321)
468 KOG0732 AAA+-type ATPase conta 91.4 0.3 6.5E-06 53.5 5.3 61 250-311 345-415 (1080)
469 COG0466 Lon ATP-dependent Lon 91.3 1.8 3.9E-05 45.4 10.4 94 159-297 351-445 (782)
470 TIGR02397 dnaX_nterm DNA polym 91.2 1.3 2.7E-05 43.7 9.4 16 160-175 38-53 (355)
471 TIGR00767 rho transcription te 91.1 1.1 2.4E-05 44.2 8.5 18 157-174 167-184 (415)
472 PRK14701 reverse gyrase; Provi 91.1 0.73 1.6E-05 54.1 8.4 59 375-433 123-187 (1638)
473 COG1132 MdlB ABC-type multidru 91.1 0.86 1.9E-05 48.2 8.5 34 267-300 481-514 (567)
474 COG2874 FlaH Predicted ATPases 91.1 6.4 0.00014 35.1 12.2 44 267-310 121-167 (235)
475 TIGR01243 CDC48 AAA family ATP 91.1 0.76 1.6E-05 50.1 8.2 17 159-175 488-504 (733)
476 COG1485 Predicted ATPase [Gene 91.0 3.7 8.1E-05 39.5 11.5 110 159-315 66-176 (367)
477 PRK09354 recA recombinase A; P 90.9 0.59 1.3E-05 45.4 6.3 42 158-207 60-101 (349)
478 TIGR00763 lon ATP-dependent pr 90.9 2.8 6E-05 46.1 12.3 18 158-175 347-364 (775)
479 KOG0060 Long-chain acyl-CoA tr 90.8 0.2 4.3E-06 50.8 3.1 45 267-315 586-630 (659)
480 TIGR00602 rad24 checkpoint pro 90.8 1.2 2.7E-05 47.0 9.0 17 159-175 111-127 (637)
481 PRK13850 type IV secretion sys 90.7 0.2 4.3E-06 53.2 3.2 50 159-218 140-189 (670)
482 KOG0339 ATP-dependent RNA heli 90.6 1.6 3.4E-05 43.8 8.9 69 376-448 298-376 (731)
483 TIGR03878 thermo_KaiC_2 KaiC d 90.6 0.73 1.6E-05 43.1 6.6 37 157-201 35-71 (259)
484 PRK04328 hypothetical protein; 90.5 0.54 1.2E-05 43.8 5.6 53 157-218 22-74 (249)
485 TIGR02640 gas_vesic_GvpN gas v 90.4 0.27 5.8E-06 46.2 3.6 27 149-175 12-38 (262)
486 PF04665 Pox_A32: Poxvirus A32 90.4 0.39 8.4E-06 44.0 4.4 35 160-202 15-49 (241)
487 KOG0652 26S proteasome regulat 90.4 2.1 4.4E-05 39.2 8.8 17 158-174 205-221 (424)
488 PF10412 TrwB_AAD_bind: Type I 90.3 0.37 8E-06 48.0 4.6 45 156-208 13-57 (386)
489 COG1197 Mfd Transcription-repa 90.3 1.2 2.6E-05 49.4 8.6 74 375-448 644-722 (1139)
490 PRK11192 ATP-dependent RNA hel 90.2 3.5 7.5E-05 41.9 11.7 71 374-448 73-153 (434)
491 TIGR00614 recQ_fam ATP-depende 90.1 1.6 3.6E-05 44.8 9.3 58 375-432 52-109 (470)
492 cd03221 ABCF_EF-3 ABCF_EF-3 E 90.1 1.1 2.3E-05 37.8 6.6 31 267-297 86-116 (144)
493 KOG0730 AAA+-type ATPase [Post 90.0 2.7 5.9E-05 43.6 10.4 56 117-175 427-485 (693)
494 PRK05416 glmZ(sRNA)-inactivati 90.0 8.5 0.00018 36.6 13.2 25 384-409 260-284 (288)
495 TIGR00416 sms DNA repair prote 90.0 1.4 2.9E-05 45.0 8.4 53 157-218 93-145 (454)
496 CHL00176 ftsH cell division pr 90.0 2.2 4.7E-05 45.4 10.1 17 159-175 217-233 (638)
497 cd03239 ABC_SMC_head The struc 89.8 0.27 5.7E-06 43.1 2.8 41 268-308 115-156 (178)
498 KOG2543 Origin recognition com 89.7 1.9 4.2E-05 41.8 8.5 46 268-313 114-161 (438)
499 TIGR02868 CydC thiol reductant 89.5 0.59 1.3E-05 48.9 5.6 17 157-173 360-376 (529)
500 TIGR02858 spore_III_AA stage I 89.5 2.9 6.4E-05 39.2 9.7 25 149-173 99-126 (270)
No 1
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.8e-71 Score=534.73 Aligned_cols=346 Identities=44% Similarity=0.722 Sum_probs=326.0
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHh-cCCCCCCCCCeEEEE
Q 010709 122 SFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVA-QTPVGRGDGPLALVL 200 (503)
Q Consensus 122 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~-~~~~~~~~~~~~lil 200 (503)
.|.++++++.+...++..||..|+|+|.+.||.++.|+|++..+.||||||++|++|++.++.. .+...++++|.+||+
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 7899999999999999999999999999999999999999999999999999999999999998 566777889999999
Q ss_pred cccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhH
Q 010709 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 280 (503)
Q Consensus 201 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~ 280 (503)
+||||||.|+.+.+.+++..+. +++.|++||.....+.+.+..+.+|+|+|||+|.++++.+...+.+++++|+||||+
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~~-~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADr 250 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSLR-LRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADR 250 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCCC-ccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHh
Confidence 9999999999999999998774 889999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCHHHHHHHHHhC-CCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCC--CCCCceEEEEEEcChhhHHHHHH
Q 010709 281 MLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVS--SPTANVIQILEKVSENEKVDRLL 357 (503)
Q Consensus 281 l~~~~~~~~~~~il~~~-~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~l~ 357 (503)
|+++||..++++|+..+ ++..|++++|||+|..++.++..|+.+|..+.+.... ....++.|....++...|...+.
T Consensus 251 MldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~ 330 (519)
T KOG0331|consen 251 MLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLG 330 (519)
T ss_pred hhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHH
Confidence 99999999999999999 6666899999999999999999999999999988654 66778999999999989998888
Q ss_pred HHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccC
Q 010709 358 ALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRG 437 (503)
Q Consensus 358 ~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 437 (503)
.++.... ..+.+|+||||++++.|++|+..|+..++++..+||+.+|.+|..+++.|++|+..||||||+++||
T Consensus 331 ~lL~~~~------~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRG 404 (519)
T KOG0331|consen 331 KLLEDIS------SDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARG 404 (519)
T ss_pred HHHHHHh------ccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEccccccc
Confidence 8887765 2466789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEccCCCChhHHHHhhCccee--------eeeeccC
Q 010709 438 LDVMGVAHVVNLDLPKVLLAASESLCTTSF--------NITTNLD 474 (503)
Q Consensus 438 ldip~v~~VI~~~~p~s~~~~~Qr~GR~gR--------~~~~~~~ 474 (503)
||||+|++|||||+|.++++|+||+||+|| ++++..+
T Consensus 405 LDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~ 449 (519)
T KOG0331|consen 405 LDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDN 449 (519)
T ss_pred CCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHH
Confidence 999999999999999999999999999999 4566665
No 2
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-68 Score=487.97 Aligned_cols=350 Identities=39% Similarity=0.583 Sum_probs=328.0
Q ss_pred CcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEE
Q 010709 119 PIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLAL 198 (503)
Q Consensus 119 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~l 198 (503)
...+|.++++.+.+.++++..++..|+++|.++||.++.|+|||+.|+||||||.+|++|++++++..+. .++++
T Consensus 59 ~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~-----~~~~l 133 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK-----LFFAL 133 (476)
T ss_pred hhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC-----CceEE
Confidence 4567999999999999999999999999999999999999999999999999999999999999998653 48899
Q ss_pred EEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHc-CCCCCCCccEEEecc
Q 010709 199 VLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ-GNTSLSRVSFVILDE 277 (503)
Q Consensus 199 il~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~-~~~~l~~~~~vViDE 277 (503)
|++||||||.|+.+.+..++... ++++.++.||.+...+...+...++|+|+|||+|++++.+ +.+.+..++++|+||
T Consensus 134 VLtPtRELA~QI~e~fe~Lg~~i-glr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDE 212 (476)
T KOG0330|consen 134 VLTPTRELAQQIAEQFEALGSGI-GLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDE 212 (476)
T ss_pred EecCcHHHHHHHHHHHHHhcccc-CeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhch
Confidence 99999999999999999999877 6999999999999999999999999999999999999995 568999999999999
Q ss_pred hhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHH
Q 010709 278 ADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLL 357 (503)
Q Consensus 278 aH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 357 (503)
||++++++|...+..|++.+|...|++++|||++..+.++...-+.+|..+...........+.|.+..++...|..+|+
T Consensus 213 ADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV 292 (476)
T KOG0330|consen 213 ADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLV 292 (476)
T ss_pred HHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHH
Confidence 99999999999999999999999999999999999999999999999999999998999999999999999999999999
Q ss_pred HHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccC
Q 010709 358 ALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRG 437 (503)
Q Consensus 358 ~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 437 (503)
.++.+. ..+.+||||++...++.++-.|+..|+.+.++||.|++..|.-.+++|++|.+.||||||+++||
T Consensus 293 ~ll~e~---------~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRG 363 (476)
T KOG0330|consen 293 YLLNEL---------AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRG 363 (476)
T ss_pred HHHHhh---------cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhccc
Confidence 998864 34579999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEccCCCChhHHHHhhCccee--------eeeeccC-chhhhhhHH
Q 010709 438 LDVMGVAHVVNLDLPKVLLAASESLCTTSF--------NITTNLD-GDMKKLEFC 483 (503)
Q Consensus 438 ldip~v~~VI~~~~p~s~~~~~Qr~GR~gR--------~~~~~~~-~~~~~~~~~ 483 (503)
+|||.|++|||||+|.+..+|+||+||+|| ++.+..| .-+.+++..
T Consensus 364 LDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~ 418 (476)
T KOG0330|consen 364 LDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHA 418 (476)
T ss_pred CCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHH
Confidence 999999999999999999999999999777 4666666 555666553
No 3
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=2.5e-66 Score=488.56 Aligned_cols=374 Identities=40% Similarity=0.657 Sum_probs=347.2
Q ss_pred cccCCCHHHHHHHHHHcCceEEecCCCCCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEcc
Q 010709 87 RVLRFNPEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAE 166 (503)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~ 166 (503)
.+..+++..+..+++.+++..++. ..|+|+.+|++.+++.++++.+...||..|+|+|++++|..++++|+|..+.
T Consensus 215 ~l~Em~~rdwri~redynis~kg~----~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaE 290 (673)
T KOG0333|consen 215 VLAEMTERDWRIFREDYNISIKGG----RLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAE 290 (673)
T ss_pred hHHhcCCccceeeecceeeeecCC----CCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEe
Confidence 445566677778888888877754 8999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHhHHHHHHHHHhcCCC----CCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHh
Q 010709 167 TGSGKTAAFTIPMIQHCVAQTPV----GRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL 242 (503)
Q Consensus 167 TGsGKTl~~~lp~l~~~~~~~~~----~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (503)
||||||++|++|++.++...++. +...||.++|++|||+|++|+.++-.++++.+ +++++.+.||....++--.+
T Consensus 291 TgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~l-g~r~vsvigg~s~EEq~fql 369 (673)
T KOG0333|consen 291 TGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPL-GIRTVSVIGGLSFEEQGFQL 369 (673)
T ss_pred ccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccc-cceEEEEecccchhhhhhhh
Confidence 99999999999999998887743 33568999999999999999999999999887 49999999999999988888
Q ss_pred hCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhCCC-----------------------
Q 010709 243 RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPD----------------------- 299 (503)
Q Consensus 243 ~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~----------------------- 299 (503)
..+|+|+|+|||+|.+.+.+..+.+.++.+||+|||++|+++||.+++..++.++|.
T Consensus 370 s~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~ 449 (673)
T KOG0333|consen 370 SMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSS 449 (673)
T ss_pred hccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccc
Confidence 999999999999999999998899999999999999999999999999999999863
Q ss_pred --CCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcE
Q 010709 300 --KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLT 377 (503)
Q Consensus 300 --~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~ 377 (503)
-+|.++||||+|+.++.+++.|+.+|+.+.++....+...+.|.+..+...+|...|...+.+. ..+++
T Consensus 450 k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~---------~~ppi 520 (673)
T KOG0333|consen 450 KKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESN---------FDPPI 520 (673)
T ss_pred cceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhC---------CCCCE
Confidence 1689999999999999999999999999999999999999999999999999988888888764 34579
Q ss_pred EEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCChhH
Q 010709 378 IVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKVLLA 457 (503)
Q Consensus 378 lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~ 457 (503)
|||+|+++.|+.|++.|.+.|+++..|||+-+|++|..+++.|++|..+|||||++++||||||+|.+|||||+++++.+
T Consensus 521 IIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieD 600 (673)
T KOG0333|consen 521 IIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIED 600 (673)
T ss_pred EEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCccee--------eeeeccC
Q 010709 458 ASESLCTTSF--------NITTNLD 474 (503)
Q Consensus 458 ~~Qr~GR~gR--------~~~~~~~ 474 (503)
|+|||||+|| +++|..|
T Consensus 601 YtHRIGRTgRAGk~GtaiSflt~~d 625 (673)
T KOG0333|consen 601 YTHRIGRTGRAGKSGTAISFLTPAD 625 (673)
T ss_pred HHHHhccccccccCceeEEEeccch
Confidence 9999999999 4667666
No 4
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.7e-64 Score=518.36 Aligned_cols=385 Identities=39% Similarity=0.610 Sum_probs=344.4
Q ss_pred CCCCCccCCCCCCCcccCCCHHHHHHHHHHcCceEEecCCCCCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHH
Q 010709 73 PVPQPVFNNWKPSDRVLRFNPEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAM 152 (503)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i 152 (503)
.++.+.+++|.+++.+..+..++++.++...++.+.. +...|.|+.+|+++++++.+++.|..+||..|+++|.++|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai 161 (545)
T PTZ00110 85 NLVPFEKNFYKEHPEVSALSSKEVDEIRKEKEITIIA---GENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGW 161 (545)
T ss_pred cccchhhhcccCChhhhcCCHHHHHHHHHhcCcEEec---CCCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHH
Confidence 4556667888888899999999999999998887631 2367889999999999999999999999999999999999
Q ss_pred HHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECC
Q 010709 153 PVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGG 232 (503)
Q Consensus 153 ~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~ 232 (503)
|.++.|+|+|+++|||||||++|++|++.++..++......++.+|||+|||+||.|+.+.+++++... .+++.+++|+
T Consensus 162 p~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~-~i~~~~~~gg 240 (545)
T PTZ00110 162 PIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASS-KIRNTVAYGG 240 (545)
T ss_pred HHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhccc-CccEEEEeCC
Confidence 999999999999999999999999999999887654444567899999999999999999999998765 5888999999
Q ss_pred ccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCH
Q 010709 233 TNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPV 312 (503)
Q Consensus 233 ~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~ 312 (503)
.....+...+..+++|+|+||++|.+++.+....+.++++|||||||++++++|...+.+++..++++.|++++|||+|.
T Consensus 241 ~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~ 320 (545)
T PTZ00110 241 VPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPK 320 (545)
T ss_pred CCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCH
Confidence 99888888888899999999999999999888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC-CCeEEEeCCCC-CCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHH
Q 010709 313 EIEALAQEYLT-DPVQVKVGKVS-SPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEV 390 (503)
Q Consensus 313 ~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l 390 (503)
+++.+++.++. ++..+.+.... .....+.+.+..+....|...+..++.... ...+++||||++++.|+.+
T Consensus 321 ~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~-------~~~~k~LIF~~t~~~a~~l 393 (545)
T PTZ00110 321 EVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIM-------RDGDKILIFVETKKGADFL 393 (545)
T ss_pred HHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhc-------ccCCeEEEEecChHHHHHH
Confidence 99999998886 57777766544 334567777777777777777777665432 1345799999999999999
Q ss_pred HHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 391 SEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 391 ~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
++.|+..++.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|+|++||+||+|.++++|+||+||+||.
T Consensus 394 ~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~ 471 (545)
T PTZ00110 394 TKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRA 471 (545)
T ss_pred HHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999994
No 5
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=7.7e-67 Score=474.78 Aligned_cols=387 Identities=39% Similarity=0.660 Sum_probs=363.0
Q ss_pred CCCCCCCCccCCCCCCCcccCCCHHHHHHHHHHcCceEEecCCCCCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHH
Q 010709 70 ASHPVPQPVFNNWKPSDRVLRFNPEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQA 149 (503)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~ 149 (503)
....+.+|....|.++-.+..++.++-+..+.++.+.|.+. ..|+|+.+|.++.++..+++.|++.|+..|||+|.
T Consensus 123 kGi~Y~ePi~T~WkPP~hir~mS~e~~e~vRk~~~I~veGd----~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQv 198 (610)
T KOG0341|consen 123 KGITYEEPIKTAWKPPRHIRKMSEEQRELVRKQLHILVEGD----DIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQV 198 (610)
T ss_pred CCCcccCcchhccCCcHHHHHhhHHHHHHHHHhheEEeeCC----CCCCchhhhhhccCCHHHHHHHHhcCCCCCCceee
Confidence 34667889999999999999999999999999999988865 88999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcC---CCCCCCCCeEEEEcccHHHHHHHHHHHHHHhcc-----C
Q 010709 150 QAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQT---PVGRGDGPLALVLAPTRELAQQIEKEVKALSRS-----L 221 (503)
Q Consensus 150 ~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~---~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~-----~ 221 (503)
+.+|.++.|+|.|..|-||||||++|.+|++...+.+. +..++.||..||+||+|+||.|.++.+..+... .
T Consensus 199 QGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~ 278 (610)
T KOG0341|consen 199 QGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGY 278 (610)
T ss_pred cCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999998877654 456778999999999999999999999888753 3
Q ss_pred CCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCC
Q 010709 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKH 301 (503)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~ 301 (503)
+.++..++.||....++...++.+.+|+|+|||+|.+++.+....++-++++.+||||+|+++||...++.++..+...+
T Consensus 279 P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QR 358 (610)
T KOG0341|consen 279 PELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQR 358 (610)
T ss_pred hhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhh
Confidence 45788899999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred cEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEE
Q 010709 302 QTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFV 381 (503)
Q Consensus 302 q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~ 381 (503)
|+++||||+|..++.+++.-+..|+.+.++.......++.|.+.+++.+.|+-+++.-+.+ ..+++||||
T Consensus 359 QTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQK----------T~PpVLIFa 428 (610)
T KOG0341|consen 359 QTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQK----------TSPPVLIFA 428 (610)
T ss_pred heeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhcc----------CCCceEEEe
Confidence 9999999999999999999999999999999999999999999999999999888877654 345799999
Q ss_pred cchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHh
Q 010709 382 ERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASES 461 (503)
Q Consensus 382 ~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr 461 (503)
..+..++.++++|.-.|+.++.+|||-.|++|...++.|+.|+.+|||||++++.|+|+|++.||||||+|..+++|.||
T Consensus 429 EkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHR 508 (610)
T KOG0341|consen 429 EKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHR 508 (610)
T ss_pred ccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCcceeeee
Q 010709 462 LCTTSFNIT 470 (503)
Q Consensus 462 ~GR~gR~~~ 470 (503)
|||+||+-.
T Consensus 509 IGRTGRsg~ 517 (610)
T KOG0341|consen 509 IGRTGRSGK 517 (610)
T ss_pred hcccCCCCC
Confidence 999999643
No 6
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.8e-63 Score=502.71 Aligned_cols=337 Identities=43% Similarity=0.673 Sum_probs=311.8
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEE
Q 010709 121 ESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (503)
Q Consensus 121 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil 200 (503)
..|.++++++.+++.+...||..|+|+|.++||.++.|+|+++.++||+|||++|.+|++..+.... .....+ +||+
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~--~~~~~~-aLil 105 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV--ERKYVS-ALIL 105 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccc--ccCCCc-eEEE
Confidence 6799999999999999999999999999999999999999999999999999999999999966421 111112 9999
Q ss_pred cccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhH
Q 010709 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 280 (503)
Q Consensus 201 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~ 280 (503)
+||||||.|+++.+..++.....+.+..++||.....+...+..+++|+|+|||+|++++.+..+.+.+++++|+||||+
T Consensus 106 ~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADr 185 (513)
T COG0513 106 APTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADR 185 (513)
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhh
Confidence 99999999999999999987645889999999999999988888899999999999999999999999999999999999
Q ss_pred HhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCC--CCCceEEEEEEcChhh-HHHHHH
Q 010709 281 MLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSS--PTANVIQILEKVSENE-KVDRLL 357 (503)
Q Consensus 281 l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-k~~~l~ 357 (503)
|+++||...+..++..++++.|+++||||+|..+..+++.++.+|..+.+..... ....+.|.+..+.... |...|.
T Consensus 186 mLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~ 265 (513)
T COG0513 186 MLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLL 265 (513)
T ss_pred hhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888885554 7888999999999876 888888
Q ss_pred HHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccC
Q 010709 358 ALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRG 437 (503)
Q Consensus 358 ~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 437 (503)
.++... ...++||||+++..++.++..|...|+.+..+||+++|.+|.++++.|++|+.+||||||+++||
T Consensus 266 ~ll~~~---------~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRG 336 (513)
T COG0513 266 KLLKDE---------DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARG 336 (513)
T ss_pred HHHhcC---------CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhcc
Confidence 888653 33369999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEccCCCChhHHHHhhCcceeee
Q 010709 438 LDVMGVAHVVNLDLPKVLLAASESLCTTSFNI 469 (503)
Q Consensus 438 ldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~~ 469 (503)
||||+|++|||||+|.+.+.|+||+||+||.-
T Consensus 337 iDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG 368 (513)
T COG0513 337 LDIPDVSHVINYDLPLDPEDYVHRIGRTGRAG 368 (513)
T ss_pred CCccccceeEEccCCCCHHHheeccCccccCC
Confidence 99999999999999999999999999999964
No 7
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=3.8e-62 Score=499.84 Aligned_cols=380 Identities=35% Similarity=0.574 Sum_probs=334.9
Q ss_pred CCccCCCCCCCccc-CCCHHHHHHHHHHcCceEEecCCCCCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH
Q 010709 76 QPVFNNWKPSDRVL-RFNPEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPV 154 (503)
Q Consensus 76 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~ 154 (503)
...+.+|....... .+..++++.+++..++.+.+. ..|.|+.+|+++++++.+++.|...||..|+|+|.++|+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~~~g~----~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~ 154 (518)
T PLN00206 79 ATDECFYVRDPGSTSGLSSSQAELLRRKLEIHVKGE----AVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPA 154 (518)
T ss_pred CcCCcCCccCcchhccCCHHHHHHHHHHCCCEecCC----CCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 34445555544443 488899999999999887643 7789999999999999999999999999999999999999
Q ss_pred HhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCC--CCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECC
Q 010709 155 ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTP--VGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGG 232 (503)
Q Consensus 155 i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~--~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~ 232 (503)
++.|+|+++++|||+|||++|++|++.++..... .....++++|||+|||+||.|+.+.++.+.... ++.+..++||
T Consensus 155 il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~-~~~~~~~~gG 233 (518)
T PLN00206 155 ALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGL-PFKTALVVGG 233 (518)
T ss_pred HhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCC-CceEEEEECC
Confidence 9999999999999999999999999988765321 122357899999999999999999999988765 4788889999
Q ss_pred ccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCH
Q 010709 233 TNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPV 312 (503)
Q Consensus 233 ~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~ 312 (503)
.....+...+..+++|+|+||++|.+++.+....+.++++|||||||+|++++|...+.+++..++ ..|++++|||+++
T Consensus 234 ~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~ 312 (518)
T PLN00206 234 DAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSP 312 (518)
T ss_pred cchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCH
Confidence 988888888888899999999999999998888899999999999999999999999999998885 5799999999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHH
Q 010709 313 EIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSE 392 (503)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~ 392 (503)
.++.++..++.++..+...........+.+.+..+....+...+...+.... ...+++||||+++..++.+++
T Consensus 313 ~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~-------~~~~~~iVFv~s~~~a~~l~~ 385 (518)
T PLN00206 313 EVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQ-------HFKPPAVVFVSSRLGADLLAN 385 (518)
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHHHhhc-------ccCCCEEEEcCCchhHHHHHH
Confidence 9999999999999998887777667777888888887777777776665422 123469999999999999999
Q ss_pred HHHH-CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 393 ALVA-EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 393 ~L~~-~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
.|.. .++.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|++++||+||+|.++.+|+||+||+||.
T Consensus 386 ~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~ 462 (518)
T PLN00206 386 AITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRM 462 (518)
T ss_pred HHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccC
Confidence 9975 589999999999999999999999999999999999999999999999999999999999999999999995
No 8
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.2e-64 Score=457.64 Aligned_cols=393 Identities=40% Similarity=0.597 Sum_probs=347.0
Q ss_pred CCCCCccCCCCCCCcccCCCHHHHHHHHHHcC-ceEEec--CCCCCCCCCcCCcccC-CCCHHHHHHHHHCCCCCCcHHH
Q 010709 73 PVPQPVFNNWKPSDRVLRFNPEQIEEVRLRLN-VDVTVA--SGSVPAPAPIESFTDM-CLHPSIMKDIEFHEYTRPTSIQ 148 (503)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~--~~~~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~~~Q 148 (503)
.+|...+++|+++.....++++++.++++... +.+... ....+.|+|.-+|++. .-.+++++++.+.||.+|+|+|
T Consensus 168 ~lpPi~knfYke~~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqKPtPIq 247 (629)
T KOG0336|consen 168 KLPPIKKNFYKESNETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQ 247 (629)
T ss_pred cCCchhhhhhhcCchhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcch
Confidence 34555678899999999999999999887754 444321 2234789999999886 6889999999999999999999
Q ss_pred HHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCC-CCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEE
Q 010709 149 AQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTP-VGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTA 227 (503)
Q Consensus 149 ~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~-~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~ 227 (503)
.++||.+++|.|++.+|.||+|||++|++|.+.++..++. .+...++.+|+++|||+|+.|+.-+++++.. ++.+..
T Consensus 248 SQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysy--ng~ksv 325 (629)
T KOG0336|consen 248 SQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSY--NGLKSV 325 (629)
T ss_pred hcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhh--cCcceE
Confidence 9999999999999999999999999999999988877764 2344678999999999999999999988863 478899
Q ss_pred EEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEE
Q 010709 228 IVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (503)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~S 307 (503)
+++||.+..++...+..+.+|+++||++|.++...+.+++..+.++|+||||+|++++|.+++++++--++|++|+++.|
T Consensus 326 c~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTS 405 (629)
T KOG0336|consen 326 CVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTS 405 (629)
T ss_pred EEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCHHHHHHHHHhcCCCeEEEeCCCCCC-CCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhh
Q 010709 308 ATMPVEIEALAQEYLTDPVQVKVGKVSSP-TANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTR 386 (503)
Q Consensus 308 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~ 386 (503)
||+|+.+..++..|+.+|..+.++..... ...+.|.+......+|. .+.+.+.+.. .+..|+||||.++..
T Consensus 406 ATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~-~~~~~f~~~m-------s~ndKvIiFv~~K~~ 477 (629)
T KOG0336|consen 406 ATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKL-EIVQFFVANM-------SSNDKVIIFVSRKVM 477 (629)
T ss_pred ccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHH-HHHHHHHHhc-------CCCceEEEEEechhh
Confidence 99999999999999999999999887744 45577877555556665 4444443333 456689999999999
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCcce
Q 010709 387 CDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTS 466 (503)
Q Consensus 387 ~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~g 466 (503)
|+.|...|.-.|+..-.+||+-.|.+|+..++.|++|+++|||||++++||||+|++.||+|||+|.+++.|+||+||+|
T Consensus 478 AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtG 557 (629)
T KOG0336|consen 478 ADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTG 557 (629)
T ss_pred hhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred e--------eeeeccCc
Q 010709 467 F--------NITTNLDG 475 (503)
Q Consensus 467 R--------~~~~~~~~ 475 (503)
| ++++.+|.
T Consensus 558 RaGr~G~sis~lt~~D~ 574 (629)
T KOG0336|consen 558 RAGRTGTSISFLTRNDW 574 (629)
T ss_pred cCCCCcceEEEEehhhH
Confidence 7 46677763
No 9
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-63 Score=433.93 Aligned_cols=356 Identities=32% Similarity=0.513 Sum_probs=323.1
Q ss_pred CCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCC
Q 010709 115 PAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDG 194 (503)
Q Consensus 115 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~ 194 (503)
..-.++.+|+++++.+++++.+..+||.+|..+|+.|++.++.|+|||+.+..|+|||.+|.+.+++.+.-. ...
T Consensus 21 ~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~-----~r~ 95 (400)
T KOG0328|consen 21 EKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS-----VRE 95 (400)
T ss_pred cCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc-----cce
Confidence 334567789999999999999999999999999999999999999999999999999999888777654332 224
Q ss_pred CeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEE
Q 010709 195 PLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVI 274 (503)
Q Consensus 195 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vV 274 (503)
..+||+.||||||.|+.+.+..++.++ ++.+..+.||.+..+..+.+..+.+++.+|||++++++.+..+.-+.++++|
T Consensus 96 tQ~lilsPTRELa~Qi~~vi~alg~~m-nvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlV 174 (400)
T KOG0328|consen 96 TQALILSPTRELAVQIQKVILALGDYM-NVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLV 174 (400)
T ss_pred eeEEEecChHHHHHHHHHHHHHhcccc-cceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEE
Confidence 679999999999999999999999887 4889999999999998899999999999999999999999999999999999
Q ss_pred ecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhh-HH
Q 010709 275 LDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENE-KV 353 (503)
Q Consensus 275 iDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~ 353 (503)
+||||.|++.+|..++..+++++|+..|++++|||+|.++.+...+|+.+|+.+.+.+...+...+.+++..+..++ |.
T Consensus 175 LDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKf 254 (400)
T KOG0328|consen 175 LDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKF 254 (400)
T ss_pred eccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999998888999999998887 99
Q ss_pred HHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc
Q 010709 354 DRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDV 433 (503)
Q Consensus 354 ~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~ 433 (503)
+.|+.+..... -..++|||+++..++.|.+.++..++.|..+||+|++++|.++++.|++|+-+|||+|++
T Consensus 255 dtLcdLYd~Lt---------ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDV 325 (400)
T KOG0328|consen 255 DTLCDLYDTLT---------ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDV 325 (400)
T ss_pred hHHHHHhhhhe---------hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEech
Confidence 88888775432 224899999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCEEEEccCCCChhHHHHhhCcceee--------eeeccC-chhhhhhHHHH
Q 010709 434 ASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFN--------ITTNLD-GDMKKLEFCLI 485 (503)
Q Consensus 434 ~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~--------~~~~~~-~~~~~~~~~~~ 485 (503)
-+||+|+|.|++|||||+|.+.+.|+|||||.||. +...+| ..++.++.+|.
T Consensus 326 waRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~ys 386 (400)
T KOG0328|consen 326 WARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYS 386 (400)
T ss_pred hhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999984 344444 44555555554
No 10
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-61 Score=453.58 Aligned_cols=379 Identities=40% Similarity=0.642 Sum_probs=356.1
Q ss_pred CCccCCCCCCCcccCCCHHHHHHHHHHcCceEEecCCCCCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHH
Q 010709 76 QPVFNNWKPSDRVLRFNPEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVA 155 (503)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i 155 (503)
.+.+++|.+++.+..+...+.-.++..++..|... ..|.|+.+|+++++++.|...+++..|.+||++|.+++|..
T Consensus 182 p~~kdfy~e~esI~gl~~~d~~~~r~~Lnlrv~g~----s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalpta 257 (731)
T KOG0339|consen 182 PFNKDFYEEHESIEGLTKMDVIDLRLTLNLRVSGS----SPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTA 257 (731)
T ss_pred ccccccccChhhhhccccccchhhHhhhcceeccC----CCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccc
Confidence 44567888899999999999999999999988865 78899999999999999999999999999999999999999
Q ss_pred hcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccH
Q 010709 156 LSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNI 235 (503)
Q Consensus 156 ~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (503)
+.|++|+-.|.||||||.+|+.|++.+++.++....+++|..||++|||+||.|++.++++|++.. +++++++|||...
T Consensus 258 lsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~y-gl~~v~~ygGgsk 336 (731)
T KOG0339|consen 258 LSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAY-GLRVVAVYGGGSK 336 (731)
T ss_pred cccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhc-cceEEEeecCCcH
Confidence 999999999999999999999999999999999888999999999999999999999999999887 5999999999999
Q ss_pred HHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHH
Q 010709 236 AEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIE 315 (503)
Q Consensus 236 ~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~ 315 (503)
.++...+..++.|+|||||+|++++.-+..++.+++++|||||++|.++||.++++.|...+++++|.|+||||++..++
T Consensus 337 ~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe 416 (731)
T KOG0339|consen 337 WEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIE 416 (731)
T ss_pred HHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHH
Confidence 99999999999999999999999999989999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChh-hHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHH
Q 010709 316 ALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSEN-EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEAL 394 (503)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L 394 (503)
.+++.++.+|+.+...........+.|.+..+... .|+.-++..|... ...+++|||+..+..++.++..|
T Consensus 417 ~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f--------~S~gkvlifVTKk~~~e~i~a~L 488 (731)
T KOG0339|consen 417 KLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEF--------SSEGKVLIFVTKKADAEEIAANL 488 (731)
T ss_pred HHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhh--------ccCCcEEEEEeccCCHHHHHHHh
Confidence 99999999999998888888888899988888764 5666665555443 34568999999999999999999
Q ss_pred HHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCccee
Q 010709 395 VAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSF 467 (503)
Q Consensus 395 ~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR 467 (503)
...+++|..+||++.|.+|.+++.+|+.+...|||+|+++++|+|||++++|||||+.++++.+.||+||+||
T Consensus 489 klk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgR 561 (731)
T KOG0339|consen 489 KLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGR 561 (731)
T ss_pred ccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999
No 11
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-62 Score=460.02 Aligned_cols=334 Identities=37% Similarity=0.570 Sum_probs=304.5
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEE
Q 010709 120 IESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (503)
Q Consensus 120 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~li 199 (503)
..+|.+++|+..+++++...||..|+|+|..+||..+.|+|++.||.||+|||.+|.+|+|.+++..+.. -...+|||
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~--~~~TRVLV 257 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK--VAATRVLV 257 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc--CcceeEEE
Confidence 4479999999999999999999999999999999999999999999999999999999999999887632 34578999
Q ss_pred EcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcC-CCCCCCccEEEecch
Q 010709 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG-NTSLSRVSFVILDEA 278 (503)
Q Consensus 200 l~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~~l~~~~~vViDEa 278 (503)
++|||+|+.|++...++++... ++.++++.||.+.+.+-..++..++|+|+|||+|.+++.+. .+.++++.++|+|||
T Consensus 258 L~PTRELaiQv~sV~~qlaqFt-~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEA 336 (691)
T KOG0338|consen 258 LVPTRELAIQVHSVTKQLAQFT-DITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEA 336 (691)
T ss_pred EeccHHHHHHHHHHHHHHHhhc-cceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechH
Confidence 9999999999999999999877 59999999999999999999999999999999999999885 678999999999999
Q ss_pred hHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhh---HHHH
Q 010709 279 DRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENE---KVDR 355 (503)
Q Consensus 279 H~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---k~~~ 355 (503)
|+|++.+|..++..|+..+++.+|.++||||++..+.+++.--+.+|+.+.++........+.|.++.+.... +-..
T Consensus 337 DRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~ 416 (691)
T KOG0338|consen 337 DRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAM 416 (691)
T ss_pred HHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHH
Confidence 9999999999999999999999999999999999999999999999999999998888888888877665322 2222
Q ss_pred HHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccc
Q 010709 356 LLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVAS 435 (503)
Q Consensus 356 l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 435 (503)
+..++.... ...+|||+.+++.|..+.-.|.-.|+++.-+||.++|.+|.+.++.|++++++|||||++++
T Consensus 417 l~~l~~rtf---------~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAs 487 (691)
T KOG0338|consen 417 LASLITRTF---------QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVAS 487 (691)
T ss_pred HHHHHHHhc---------ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhh
Confidence 333333221 12499999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEccCCCChhHHHHhhCcc
Q 010709 436 RGLDVMGVAHVVNLDLPKVLLAASESLCTT 465 (503)
Q Consensus 436 ~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~ 465 (503)
|||||++|.+||||.+|+++..|+||+||+
T Consensus 488 RGLDI~gV~tVINy~mP~t~e~Y~HRVGRT 517 (691)
T KOG0338|consen 488 RGLDIEGVQTVINYAMPKTIEHYLHRVGRT 517 (691)
T ss_pred ccCCccceeEEEeccCchhHHHHHHHhhhh
Confidence 999999999999999999999999999873
No 12
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.2e-60 Score=477.37 Aligned_cols=338 Identities=36% Similarity=0.545 Sum_probs=304.1
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCC--CCCCCeEE
Q 010709 121 ESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVG--RGDGPLAL 198 (503)
Q Consensus 121 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~--~~~~~~~l 198 (503)
.+|+++++++.+++.|..+||..|+++|.++||.+++|+|++++||||+|||++|++|++..+...+... ...++++|
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~l 87 (423)
T PRK04837 8 QKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRAL 87 (423)
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 5799999999999999999999999999999999999999999999999999999999999887654321 23468899
Q ss_pred EEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecch
Q 010709 199 VLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEA 278 (503)
Q Consensus 199 il~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEa 278 (503)
||+||++||.|+++.+..+.... ++.+..++||.....+...+..+++|+|+||++|.+++.+..+.+.++++||||||
T Consensus 88 il~PtreLa~Qi~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEa 166 (423)
T PRK04837 88 IMAPTRELAVQIHADAEPLAQAT-GLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEA 166 (423)
T ss_pred EECCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecH
Confidence 99999999999999999998766 58899999999888887888888999999999999999988888999999999999
Q ss_pred hHHhhCCCHHHHHHHHHhCCC--CCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHH
Q 010709 279 DRMLDMGFEPQIREVMQNLPD--KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRL 356 (503)
Q Consensus 279 H~l~~~~~~~~~~~il~~~~~--~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 356 (503)
|++++++|...+..++..++. ..+.+++|||++..+..+...++.+|..+.+.........+.+.+.......|...+
T Consensus 167 d~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~~l 246 (423)
T PRK04837 167 DRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMRLL 246 (423)
T ss_pred HHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHHHHH
Confidence 999999999999999999874 566899999999999999999999998888776665556677777777777777766
Q ss_pred HHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccc
Q 010709 357 LALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASR 436 (503)
Q Consensus 357 ~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 436 (503)
..++... ...++||||+++..|+.+++.|...|+.+..+||++++.+|..+++.|++|+.+|||||+++++
T Consensus 247 ~~ll~~~---------~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~r 317 (423)
T PRK04837 247 QTLIEEE---------WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAAR 317 (423)
T ss_pred HHHHHhc---------CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhc
Confidence 6665431 3457999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 437 GLDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 437 Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
|||+|+|++||+||+|.+...|+||+||+||.
T Consensus 318 GiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~ 349 (423)
T PRK04837 318 GLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRA 349 (423)
T ss_pred CCCccccCEEEEeCCCCchhheEeccccccCC
Confidence 99999999999999999999999999999995
No 13
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.7e-60 Score=447.08 Aligned_cols=340 Identities=34% Similarity=0.491 Sum_probs=311.0
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEE
Q 010709 120 IESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (503)
Q Consensus 120 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~li 199 (503)
...|+...|++..++++..+||..+|++|...++.++.|+|+++.|.||+|||++|++|++..+...+...+ ++-.+||
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r-~~~~vlI 159 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPR-NGTGVLI 159 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCC-CCeeEEE
Confidence 345888899999999999999999999999999999999999999999999999999999999887654333 6788999
Q ss_pred EcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcC-CCCCCCccEEEecch
Q 010709 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG-NTSLSRVSFVILDEA 278 (503)
Q Consensus 200 l~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~~l~~~~~vViDEa 278 (503)
++|||+||.|++.+++++..+...+.++.+.||.......+.+..+++|+|+|||+|.+++++. .+..++++++|+|||
T Consensus 160 i~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEA 239 (543)
T KOG0342|consen 160 ICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEA 239 (543)
T ss_pred ecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecc
Confidence 9999999999999999999888779999999999998888888889999999999999999985 456777899999999
Q ss_pred hHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcC-CCeEEEeCCCC--CCCCceEEEEEEcChhhHHHH
Q 010709 279 DRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLT-DPVQVKVGKVS--SPTANVIQILEKVSENEKVDR 355 (503)
Q Consensus 279 H~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~ 355 (503)
|++++.||...+.+|+..++..+|.++||||.+..++++++..+. +|..+...... .....+.|.+..++...+...
T Consensus 240 DrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~l 319 (543)
T KOG0342|consen 240 DRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSL 319 (543)
T ss_pred hhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHH
Confidence 999999999999999999999999999999999999999987776 47777765544 455668888888888888888
Q ss_pred HHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccc
Q 010709 356 LLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVAS 435 (503)
Q Consensus 356 l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 435 (503)
++.+++++... .|+||||++......+++.|+...++|..+||+++|..|..++.+|++.+.-||||||+++
T Consensus 320 l~~~LKk~~~~--------~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaA 391 (543)
T KOG0342|consen 320 LYTFLKKNIKR--------YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAA 391 (543)
T ss_pred HHHHHHHhcCC--------ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhh
Confidence 88888876422 5799999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 436 RGLDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 436 ~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
||+|+|+|+|||+||+|.+.++|+||+||+||.
T Consensus 392 RGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~ 424 (543)
T KOG0342|consen 392 RGLDIPDVDWVVQYDPPSDPEQYIHRVGRTARE 424 (543)
T ss_pred ccCCCCCceEEEEeCCCCCHHHHHHHhcccccc
Confidence 999999999999999999999999999999993
No 14
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=3e-59 Score=473.12 Aligned_cols=337 Identities=41% Similarity=0.675 Sum_probs=302.5
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCC-CCCCCCeEEEE
Q 010709 122 SFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPV-GRGDGPLALVL 200 (503)
Q Consensus 122 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~-~~~~~~~~lil 200 (503)
+|++++|++.+.+.|..+||..|+++|.++|+.+++++|+++++|||+|||++|++|++..+...... .....+++|||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 58999999999999999999999999999999999999999999999999999999999987654321 12234689999
Q ss_pred cccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhH
Q 010709 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 280 (503)
Q Consensus 201 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~ 280 (503)
+||++||.|+.+.++.+.... ++.+..++|+.....+...+..+++|+|+||++|++++....+.+.++++|||||||+
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ 160 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYL-NIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADR 160 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccC-CCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHH
Confidence 999999999999999998765 4888889999988888777888899999999999999988888899999999999999
Q ss_pred HhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHH
Q 010709 281 MLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALL 360 (503)
Q Consensus 281 l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l 360 (503)
+++++|...+..++..++...|++++|||+++.+..++..++.+|..+.+.........+.+.+..+....+...+..++
T Consensus 161 ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l~ 240 (456)
T PRK10590 161 MLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMI 240 (456)
T ss_pred HhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988877666666667777777777666655444443
Q ss_pred HHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCC
Q 010709 361 VEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDV 440 (503)
Q Consensus 361 ~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi 440 (503)
.. ....++||||+++..++.+++.|...++.+..+||++++.+|.++++.|++|+.+|||||+++++|||+
T Consensus 241 ~~---------~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDi 311 (456)
T PRK10590 241 GK---------GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDI 311 (456)
T ss_pred Hc---------CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCc
Confidence 32 234579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 441 MGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 441 p~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
|+|++||+||+|.+..+|+||+||+||.
T Consensus 312 p~v~~VI~~~~P~~~~~yvqR~GRaGR~ 339 (456)
T PRK10590 312 EELPHVVNYELPNVPEDYVHRIGRTGRA 339 (456)
T ss_pred ccCCEEEEeCCCCCHHHhhhhccccccC
Confidence 9999999999999999999999999994
No 15
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-60 Score=451.87 Aligned_cols=358 Identities=34% Similarity=0.516 Sum_probs=321.3
Q ss_pred CCHHHHHHHHHHcCceEEecCCCCCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCc
Q 010709 91 FNPEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSG 170 (503)
Q Consensus 91 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsG 170 (503)
...+.++++...+..-. ...+..|.+++++....++|+..+|..++.+|+.+||..+.|+||+..|.||||
T Consensus 48 ~Eee~i~~l~~ky~ei~---------~~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSG 118 (758)
T KOG0343|consen 48 QEEEEIEELKQKYAEID---------STTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSG 118 (758)
T ss_pred hhHHHHHHHHHHHHHhh---------hhhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCC
Confidence 34455666666553211 234567999999999999999999999999999999999999999999999999
Q ss_pred hhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEE
Q 010709 171 KTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVV 250 (503)
Q Consensus 171 KTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv 250 (503)
||++|++|+|..+.... .....|-.+|||.|||+||.|+++.+.+.+.+. ++..+++.||.........+ ++.+|+|
T Consensus 119 KTLAFlvPvlE~L~r~k-Ws~~DGlGalIISPTRELA~QtFevL~kvgk~h-~fSaGLiiGG~~~k~E~eRi-~~mNILV 195 (758)
T KOG0343|consen 119 KTLAFLVPVLEALYRLK-WSPTDGLGALIISPTRELALQTFEVLNKVGKHH-DFSAGLIIGGKDVKFELERI-SQMNILV 195 (758)
T ss_pred ceeeehHHHHHHHHHcC-CCCCCCceeEEecchHHHHHHHHHHHHHHhhcc-ccccceeecCchhHHHHHhh-hcCCeEE
Confidence 99999999999876532 334567889999999999999999999999876 69999999999988877766 4599999
Q ss_pred ECcHHHHHHHHcC-CCCCCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEE
Q 010709 251 ATPGRFLDHLQQG-NTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVK 329 (503)
Q Consensus 251 ~Tp~~l~~~l~~~-~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~ 329 (503)
||||+|++++... .+...++.++|+||||+++++||...+..|+..+|+.+|+++||||.+..+.++++-.+.+|..+.
T Consensus 196 CTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vs 275 (758)
T KOG0343|consen 196 CTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVS 275 (758)
T ss_pred echHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEE
Confidence 9999999999875 567789999999999999999999999999999999999999999999999999999999999987
Q ss_pred eCC--CCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHC--CCeEEEEc
Q 010709 330 VGK--VSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE--GLHAVALH 405 (503)
Q Consensus 330 ~~~--~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~--~~~v~~lh 405 (503)
+.. ....+.++.|.+..++...|+..|+.++..+ ...+.|||+.+.+++..+++.|++. |+.+..+|
T Consensus 276 vhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~sh---------lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~ 346 (758)
T KOG0343|consen 276 VHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSH---------LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALH 346 (758)
T ss_pred EeccccccChhhhhheEEEEehhhHHHHHHHHHHhc---------cccceEEEEehhhHHHHHHHHHHhcCCCCceeeec
Confidence 763 3466778999999999999999999999874 5568999999999999999999876 88999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCcceeee
Q 010709 406 GGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFNI 469 (503)
Q Consensus 406 ~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~~ 469 (503)
|.|.|..|.+++.+|.+...-||+||++++||+|+|.|+|||++|+|.++..|+||+||+.|.-
T Consensus 347 G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~ 410 (758)
T KOG0343|consen 347 GTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYK 410 (758)
T ss_pred cchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999953
No 16
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=3.5e-59 Score=474.87 Aligned_cols=333 Identities=40% Similarity=0.625 Sum_probs=304.7
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEE
Q 010709 121 ESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (503)
Q Consensus 121 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil 200 (503)
.+|+++++++.+.+.|...||..|+|+|.++|+.+++|+|++++||||+|||++|++|++..+... ..++++||+
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~-----~~~~~~lil 78 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK-----RFRVQALVL 78 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc-----cCCceEEEE
Confidence 469999999999999999999999999999999999999999999999999999999999886432 124679999
Q ss_pred cccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhH
Q 010709 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 280 (503)
Q Consensus 201 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~ 280 (503)
+||++||.|+.+.++.++....++.+..++||.....+...+..+++|+|+||++|.+++.+..+.+.++++||+||||+
T Consensus 79 ~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~ 158 (460)
T PRK11776 79 CPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADR 158 (460)
T ss_pred eCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHH
Confidence 99999999999999999876656889999999999888888888999999999999999998888899999999999999
Q ss_pred HhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHH
Q 010709 281 MLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALL 360 (503)
Q Consensus 281 l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l 360 (503)
+++++|...+..++..+++..|++++|||+++.+..+...++.+|..+.+.... ....+.+.+..+....|...+..++
T Consensus 159 ~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~k~~~l~~ll 237 (460)
T PRK11776 159 MLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPDERLPALQRLL 237 (460)
T ss_pred HhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988776544 3445778888888777877777766
Q ss_pred HHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCC
Q 010709 361 VEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDV 440 (503)
Q Consensus 361 ~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi 440 (503)
... ...++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|||+
T Consensus 238 ~~~---------~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi 308 (460)
T PRK11776 238 LHH---------QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDI 308 (460)
T ss_pred Hhc---------CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccch
Confidence 432 34579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 441 MGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 441 p~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
|++++||+||+|.+...|+||+||+||.
T Consensus 309 ~~v~~VI~~d~p~~~~~yiqR~GRtGR~ 336 (460)
T PRK11776 309 KALEAVINYELARDPEVHVHRIGRTGRA 336 (460)
T ss_pred hcCCeEEEecCCCCHhHhhhhcccccCC
Confidence 9999999999999999999999999994
No 17
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-59 Score=438.27 Aligned_cols=338 Identities=33% Similarity=0.491 Sum_probs=304.3
Q ss_pred CcccCC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEE
Q 010709 122 SFTDMC--LHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (503)
Q Consensus 122 ~~~~~~--l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~li 199 (503)
.|++++ |++++++++...||...||+|..+||.++.++||++.++||||||++|++|++..+..+.....+..-.+||
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalI 84 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALI 84 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEE
Confidence 466664 669999999999999999999999999999999999999999999999999999875543221111246899
Q ss_pred EcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhh-CCCcEEEECcHHHHHHHHcCC--CCCCCccEEEec
Q 010709 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELR-GGVSIVVATPGRFLDHLQQGN--TSLSRVSFVILD 276 (503)
Q Consensus 200 l~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~--~~l~~~~~vViD 276 (503)
|+|||||+.|+.+.+..+..++..+.+.++.||....+....+. .+++|+|+|||+|.+++.+.. +.++.+.++|+|
T Consensus 85 IsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLD 164 (567)
T KOG0345|consen 85 ISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLD 164 (567)
T ss_pred ecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEec
Confidence 99999999999999999998888899999999998887766665 678899999999999999843 456699999999
Q ss_pred chhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCC--CCCceEEEEEEcChhhHHH
Q 010709 277 EADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSS--PTANVIQILEKVSENEKVD 354 (503)
Q Consensus 277 EaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~ 354 (503)
|||+++++||...++.|+..+|+.+++=+||||....+.++....++||+.+.+..... ....+...+..+...+|..
T Consensus 165 EADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~ 244 (567)
T KOG0345|consen 165 EADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLS 244 (567)
T ss_pred chHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998877664 5666888899999999999
Q ss_pred HHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHC--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 010709 355 RLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD 432 (503)
Q Consensus 355 ~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~--~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~ 432 (503)
.++.++.+. ..+|+|||+++-..++.....|... +..++.+||.|.+..|..+++.|.+..-.+|+|||
T Consensus 245 ~lv~~L~~~---------~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TD 315 (567)
T KOG0345|consen 245 QLVHLLNNN---------KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTD 315 (567)
T ss_pred HHHHHHhcc---------ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeeh
Confidence 999999773 4568999999999999999988765 67899999999999999999999998899999999
Q ss_pred ccccCCCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 433 VASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 433 ~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
+++||||||+|++||+||+|++...|.||+||+||.
T Consensus 316 VaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~ 351 (567)
T KOG0345|consen 316 VAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARA 351 (567)
T ss_pred hhhccCCCCCceEEEecCCCCChhHHHhhcchhhhc
Confidence 999999999999999999999999999999998884
No 18
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.1e-58 Score=478.99 Aligned_cols=334 Identities=39% Similarity=0.617 Sum_probs=307.5
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEE
Q 010709 121 ESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (503)
Q Consensus 121 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil 200 (503)
.+|.+++|++.+++.|..+||..|+++|.++|+.+++++|+|++||||+|||++|++|++..+... ..++++||+
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~-----~~~~~~LIL 80 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE-----LKAPQILVL 80 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc-----cCCCeEEEE
Confidence 459999999999999999999999999999999999999999999999999999999999876542 235789999
Q ss_pred cccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhH
Q 010709 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 280 (503)
Q Consensus 201 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~ 280 (503)
+||++||.|+++.++.+.....++.+..++||.....+...+..+++|+|+||++|.+++.+..+.+.++++|||||||+
T Consensus 81 ~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ 160 (629)
T PRK11634 81 APTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADE 160 (629)
T ss_pred eCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHH
Confidence 99999999999999999877767899999999998888888888899999999999999998888899999999999999
Q ss_pred HhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHH
Q 010709 281 MLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALL 360 (503)
Q Consensus 281 l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l 360 (503)
|++++|...+..++..++...|+++||||+|..+..+...|+.+|..+.+.........+.+.+..+....|...+..++
T Consensus 161 ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~~L 240 (629)
T PRK11634 161 MLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 (629)
T ss_pred HhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998887766666677888888888778887777776
Q ss_pred HHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCC
Q 010709 361 VEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDV 440 (503)
Q Consensus 361 ~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi 440 (503)
... ...++||||+++..++.+++.|...|+.+..+||++++.+|.++++.|++|+.+|||||+++++|||+
T Consensus 241 ~~~---------~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDi 311 (629)
T PRK11634 241 EAE---------DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDV 311 (629)
T ss_pred Hhc---------CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCc
Confidence 442 33469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 441 MGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 441 p~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
|+|++||+||+|.+...|+||+||+||.
T Consensus 312 p~V~~VI~~d~P~~~e~yvqRiGRtGRa 339 (629)
T PRK11634 312 ERISLVVNYDIPMDSESYVHRIGRTGRA 339 (629)
T ss_pred ccCCEEEEeCCCCCHHHHHHHhccccCC
Confidence 9999999999999999999999999984
No 19
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.7e-60 Score=424.44 Aligned_cols=352 Identities=36% Similarity=0.496 Sum_probs=309.6
Q ss_pred CcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEE
Q 010709 119 PIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLAL 198 (503)
Q Consensus 119 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~l 198 (503)
....|..+|+++|+.+.++.+|+..|||+|..|||.+++|+|+|.+|.||||||++|.+|+|+++...+ .+-.++
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP-----~giFal 79 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP-----YGIFAL 79 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC-----CcceEE
Confidence 345799999999999999999999999999999999999999999999999999999999999987753 477899
Q ss_pred EEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcC----CCCCCCccEEE
Q 010709 199 VLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG----NTSLSRVSFVI 274 (503)
Q Consensus 199 il~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~----~~~l~~~~~vV 274 (503)
|++|||+||.|+.+.|..+++.. .+++.+++||+..-.+...+...+|++|+|||++.+++..+ .+.+++++++|
T Consensus 80 vlTPTrELA~QiaEQF~alGk~l-~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflV 158 (442)
T KOG0340|consen 80 VLTPTRELALQIAEQFIALGKLL-NLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLV 158 (442)
T ss_pred EecchHHHHHHHHHHHHHhcccc-cceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEE
Confidence 99999999999999999999877 59999999999999988999999999999999999999875 34688999999
Q ss_pred ecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCC--eEEEeCCCCCCCCceEEEEEEcChhhH
Q 010709 275 LDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDP--VQVKVGKVSSPTANVIQILEKVSENEK 352 (503)
Q Consensus 275 iDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~k 352 (503)
+|||+++++..|...+..+...+|+.+|.++||||+++.+..+......++ ..............+.+.+..++...|
T Consensus 159 lDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vk 238 (442)
T KOG0340|consen 159 LDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVK 238 (442)
T ss_pred ecchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhh
Confidence 999999999999999999999999999999999999888776554444432 222333334556667888999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 010709 353 VDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD 432 (503)
Q Consensus 353 ~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~ 432 (503)
-.+++..+...... +.+.++||+++..+|+.|+..|...++.++.+||.|+|++|...+.+|+++..+||||||
T Consensus 239 daYLv~~Lr~~~~~------~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTD 312 (442)
T KOG0340|consen 239 DAYLVHLLRDFENK------ENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATD 312 (442)
T ss_pred HHHHHHHHhhhhhc------cCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEec
Confidence 99999888765432 345699999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCEEEEccCCCChhHHHHhhCccee--------eeeeccC-chhhhhhH
Q 010709 433 VASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSF--------NITTNLD-GDMKKLEF 482 (503)
Q Consensus 433 ~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR--------~~~~~~~-~~~~~~~~ 482 (503)
+++||+|||.|++|||||+|+++..|+||+||+.| +++++.| .-+..++.
T Consensus 313 VAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~ 371 (442)
T KOG0340|consen 313 VASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEE 371 (442)
T ss_pred hhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHH
Confidence 99999999999999999999999999999998544 4666666 44444443
No 20
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.6e-58 Score=475.58 Aligned_cols=338 Identities=38% Similarity=0.564 Sum_probs=302.3
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCC--CCCCCeEE
Q 010709 121 ESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVG--RGDGPLAL 198 (503)
Q Consensus 121 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~--~~~~~~~l 198 (503)
.+|++++|++.+++.|...||..|+++|.++||.+++|+|+++++|||+|||++|++|++..+...+... ...++++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 4699999999999999999999999999999999999999999999999999999999999887543211 12357899
Q ss_pred EEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcC-CCCCCCccEEEecc
Q 010709 199 VLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG-NTSLSRVSFVILDE 277 (503)
Q Consensus 199 il~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~~l~~~~~vViDE 277 (503)
||+||++|+.|+++.+.+++... ++.+..++|+.....+...+..+++|+|+||++|++++.+. .+.+..+++|||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~-~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDE 167 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADL-GLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDE 167 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecC
Confidence 99999999999999999998765 58899999999988887778888999999999999998765 46788999999999
Q ss_pred hhHHhhCCCHHHHHHHHHhCCC--CCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHH
Q 010709 278 ADRMLDMGFEPQIREVMQNLPD--KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDR 355 (503)
Q Consensus 278 aH~l~~~~~~~~~~~il~~~~~--~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 355 (503)
||++++++|...+..++..++. ..|+++||||++..+..+...++.+|..+.+.........+.+.+.......|...
T Consensus 168 Ah~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~ 247 (572)
T PRK04537 168 ADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQTL 247 (572)
T ss_pred HHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHHHHH
Confidence 9999999999999999999876 68999999999999999999999988777666555555667777777777777777
Q ss_pred HHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccc
Q 010709 356 LLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVAS 435 (503)
Q Consensus 356 l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 435 (503)
+..++.. ....++||||+++..|+.+++.|...++.+..+||++++.+|.++++.|++|+.+|||||++++
T Consensus 248 L~~ll~~---------~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~a 318 (572)
T PRK04537 248 LLGLLSR---------SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAA 318 (572)
T ss_pred HHHHHhc---------ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhh
Confidence 6666543 2345799999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 436 RGLDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 436 ~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
+|||+|+|++||+||+|.+..+|+||+||+||.
T Consensus 319 rGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~ 351 (572)
T PRK04537 319 RGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARL 351 (572)
T ss_pred cCCCccCCCEEEEcCCCCCHHHHhhhhcccccC
Confidence 999999999999999999999999999999994
No 21
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6e-60 Score=451.34 Aligned_cols=356 Identities=43% Similarity=0.666 Sum_probs=324.3
Q ss_pred CCCCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCC
Q 010709 112 GSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGR 191 (503)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~ 191 (503)
.+...|.++..|.+..+.+.+..+++..++..|+|+|+.+||.+..|+++++||+||+|||.+|++|++.+++.......
T Consensus 65 ~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~ 144 (482)
T KOG0335|consen 65 SGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDR 144 (482)
T ss_pred cCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccC
Confidence 34467777889999999999999999999999999999999999999999999999999999999999999988754222
Q ss_pred -----CCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCC
Q 010709 192 -----GDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTS 266 (503)
Q Consensus 192 -----~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~ 266 (503)
...|.+||++|||+||.|++.+.+++.... .+.....||+.+...+.+.+..+|+|+|+|||+|.+++..+.+.
T Consensus 145 ~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s-~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~ 223 (482)
T KOG0335|consen 145 GESGGGVYPRALILAPTRELVDQIYNEARKFSYLS-GMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKIS 223 (482)
T ss_pred cccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccc-cceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceee
Confidence 135899999999999999999999998554 68999999999999998999999999999999999999999999
Q ss_pred CCCccEEEecchhHHhh-CCCHHHHHHHHHhCC----CCCcEEEEEeeCCHHHHHHHHHhcCC-CeEEEeCCCCCCCCce
Q 010709 267 LSRVSFVILDEADRMLD-MGFEPQIREVMQNLP----DKHQTLLFSATMPVEIEALAQEYLTD-PVQVKVGKVSSPTANV 340 (503)
Q Consensus 267 l~~~~~vViDEaH~l~~-~~~~~~~~~il~~~~----~~~q~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 340 (503)
|++++++|+||||+|++ ++|.+.+++++.+.. ...|.++||||.|.+++.++..|+.+ ...+.+........++
T Consensus 224 l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni 303 (482)
T KOG0335|consen 224 LDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENI 303 (482)
T ss_pred hhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccc
Confidence 99999999999999999 899999999998874 37899999999999999999999886 8889999999999999
Q ss_pred EEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHH
Q 010709 341 IQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDF 420 (503)
Q Consensus 341 ~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f 420 (503)
.|.+..+....|...|+.++...............+++|||.+++.|.+++..|...++.+..+||..++.+|.+.++.|
T Consensus 304 ~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~F 383 (482)
T KOG0335|consen 304 TQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDF 383 (482)
T ss_pred eeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHh
Confidence 99999999999999999998765422111112234799999999999999999999999999999999999999999999
Q ss_pred hcCCCcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 421 RNGSTNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 421 ~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
+.|...|||||++++||||||+|++||+||+|.+..+|+|||||+||.
T Consensus 384 r~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~ 431 (482)
T KOG0335|consen 384 RNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRV 431 (482)
T ss_pred hcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccC
Confidence 999999999999999999999999999999999999999999999994
No 22
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=3.2e-57 Score=457.81 Aligned_cols=336 Identities=36% Similarity=0.572 Sum_probs=299.8
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 010709 122 SFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (503)
Q Consensus 122 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~ 201 (503)
+|+++++++.+++.|...||..|+++|.++++.+++|+|+++++|||+|||++|++|++.++...+.. ...++++||++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~-~~~~~~~lil~ 80 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR-KSGPPRILILT 80 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc-CCCCceEEEEC
Confidence 58999999999999999999999999999999999999999999999999999999999988764321 22357899999
Q ss_pred ccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHH
Q 010709 202 PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRM 281 (503)
Q Consensus 202 Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l 281 (503)
||++||.|+++.+..++... ++.+..++|+.....+...+..+++|+|+||++|.+++.+..+.+.++++|||||||++
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~ 159 (434)
T PRK11192 81 PTRELAMQVADQARELAKHT-HLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRM 159 (434)
T ss_pred CcHHHHHHHHHHHHHHHccC-CcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHH
Confidence 99999999999999998766 58999999999988887778888999999999999999988888999999999999999
Q ss_pred hhCCCHHHHHHHHHhCCCCCcEEEEEeeCCH-HHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcCh-hhHHHHHHHH
Q 010709 282 LDMGFEPQIREVMQNLPDKHQTLLFSATMPV-EIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSE-NEKVDRLLAL 359 (503)
Q Consensus 282 ~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~ 359 (503)
++++|...+..+...++...|+++||||++. .+..+...++.+|..+...........+.+.+..... ..+...+..+
T Consensus 160 l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l 239 (434)
T PRK11192 160 LDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHL 239 (434)
T ss_pred hCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHH
Confidence 9999999999999999888999999999985 5788888889999888877666666667777766654 4454444444
Q ss_pred HHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCC
Q 010709 360 LVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLD 439 (503)
Q Consensus 360 l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gld 439 (503)
+.. ....++||||++++.|+.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|||
T Consensus 240 ~~~---------~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiD 310 (434)
T PRK11192 240 LKQ---------PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGID 310 (434)
T ss_pred Hhc---------CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCcc
Confidence 322 23457999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 440 VMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 440 ip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
+|++++||+||+|.+...|+||+||+||.
T Consensus 311 ip~v~~VI~~d~p~s~~~yiqr~GR~gR~ 339 (434)
T PRK11192 311 IDDVSHVINFDMPRSADTYLHRIGRTGRA 339 (434)
T ss_pred CCCCCEEEEECCCCCHHHHhhcccccccC
Confidence 99999999999999999999999999994
No 23
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-59 Score=417.37 Aligned_cols=350 Identities=31% Similarity=0.525 Sum_probs=320.9
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEE
Q 010709 120 IESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (503)
Q Consensus 120 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~li 199 (503)
-..|+++.|..+++..+...||.+|.|+|.++||.++.|+|++.-|..|+|||.+|.+|++..+... .+.-.++|
T Consensus 84 G~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~-----~~~IQ~~i 158 (459)
T KOG0326|consen 84 GNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK-----KNVIQAII 158 (459)
T ss_pred CccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcc-----ccceeEEE
Confidence 3469999999999999999999999999999999999999999999999999999999999886543 23567899
Q ss_pred EcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchh
Q 010709 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD 279 (503)
Q Consensus 200 l~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH 279 (503)
++|||+||.|+.+.++++++++. +.+...+||++..+..-.+....+++|+|||++++++.++.-.++++.++|+||||
T Consensus 159 lVPtrelALQtSqvc~~lskh~~-i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEAD 237 (459)
T KOG0326|consen 159 LVPTRELALQTSQVCKELSKHLG-IKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEAD 237 (459)
T ss_pred EeecchhhHHHHHHHHHHhcccC-eEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhh
Confidence 99999999999999999999884 99999999999999888888999999999999999999988899999999999999
Q ss_pred HHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHH
Q 010709 280 RMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLAL 359 (503)
Q Consensus 280 ~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 359 (503)
.++...|...+.+++..+|+..|++++|||.|-.+..+..+++.+|..+..-. ......+.|++-.+...+|+..|-.+
T Consensus 238 KlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~-eLtl~GvtQyYafV~e~qKvhCLntL 316 (459)
T KOG0326|consen 238 KLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLME-ELTLKGVTQYYAFVEERQKVHCLNTL 316 (459)
T ss_pred hhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhh-hhhhcchhhheeeechhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999998886543 34566788999999999999888877
Q ss_pred HHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCC
Q 010709 360 LVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLD 439 (503)
Q Consensus 360 l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gld 439 (503)
+.... -...|||||+.+.++.+++.+.+.|+.+..+|+.|.|+.|.+++..|++|.++.||||+++.||||
T Consensus 317 fskLq---------INQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGID 387 (459)
T KOG0326|consen 317 FSKLQ---------INQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGID 387 (459)
T ss_pred HHHhc---------ccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccc
Confidence 76532 235899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEccCCCChhHHHHhhCccee--------eeeeccC-chhhhhhHHHH
Q 010709 440 VMGVAHVVNLDLPKVLLAASESLCTTSF--------NITTNLD-GDMKKLEFCLI 485 (503)
Q Consensus 440 ip~v~~VI~~~~p~s~~~~~Qr~GR~gR--------~~~~~~~-~~~~~~~~~~~ 485 (503)
+++|++|||||+|++.+.|.||+||.|| ++.+++| -++.+++.-+.
T Consensus 388 iqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLG 442 (459)
T KOG0326|consen 388 IQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELG 442 (459)
T ss_pred cceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhc
Confidence 9999999999999999999999999999 5677777 66666665543
No 24
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1e-55 Score=450.53 Aligned_cols=341 Identities=38% Similarity=0.581 Sum_probs=300.7
Q ss_pred CCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCC--CCCCC
Q 010709 118 APIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVG--RGDGP 195 (503)
Q Consensus 118 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~--~~~~~ 195 (503)
.....|.++++++.+.+.|..+||..|+++|.++|+.+++|+|+|+++|||+|||++|++|++..+...+... ....+
T Consensus 84 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~ 163 (475)
T PRK01297 84 EGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEP 163 (475)
T ss_pred cCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCc
Confidence 3445688999999999999999999999999999999999999999999999999999999999887653211 11257
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhh-CCCcEEEECcHHHHHHHHcCCCCCCCccEEE
Q 010709 196 LALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVI 274 (503)
Q Consensus 196 ~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vV 274 (503)
++|||+||++||.|+.+.++.+.... ++.+..++||.....+...+. ..++|+|+||++|++++.+....++++++||
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lV 242 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYT-GLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMV 242 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccC-CCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEE
Confidence 89999999999999999999998665 588888999887766655554 5689999999999999888888899999999
Q ss_pred ecchhHHhhCCCHHHHHHHHHhCCC--CCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhH
Q 010709 275 LDEADRMLDMGFEPQIREVMQNLPD--KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEK 352 (503)
Q Consensus 275 iDEaH~l~~~~~~~~~~~il~~~~~--~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 352 (503)
|||||++.+++|...+..++..++. +.|++++|||++.++..++..++.+|..+.+.........+.+.+..+....+
T Consensus 243 iDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k 322 (475)
T PRK01297 243 LDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDK 322 (475)
T ss_pred echHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhH
Confidence 9999999999999999999998854 57999999999999999999999999888776666555667777777777777
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 010709 353 VDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD 432 (503)
Q Consensus 353 ~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~ 432 (503)
...+..++.. ....++||||++++.++.+++.|...++.+..+||++++.+|.++++.|++|+.+|||||+
T Consensus 323 ~~~l~~ll~~---------~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~ 393 (475)
T PRK01297 323 YKLLYNLVTQ---------NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATD 393 (475)
T ss_pred HHHHHHHHHh---------cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEcc
Confidence 6666665543 2345799999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 433 VASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 433 ~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
++++|||+|++++||+||+|.+..+|+||+||+||.
T Consensus 394 ~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~ 429 (475)
T PRK01297 394 VAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRA 429 (475)
T ss_pred ccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCC
Confidence 999999999999999999999999999999999994
No 25
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.9e-58 Score=432.25 Aligned_cols=349 Identities=34% Similarity=0.542 Sum_probs=306.9
Q ss_pred CCCCCcCCcccCCCCHHHHHHHH-HCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcC-CCCCC
Q 010709 115 PAPAPIESFTDMCLHPSIMKDIE-FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQT-PVGRG 192 (503)
Q Consensus 115 ~~~~~~~~~~~~~l~~~l~~~l~-~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~-~~~~~ 192 (503)
..|-....|..++|++.+...|+ .+++..||.+|.++||.+++|+|++|.++||||||++|++|+++.+.... ...+.
T Consensus 130 e~~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs 209 (708)
T KOG0348|consen 130 EAPFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRS 209 (708)
T ss_pred ccccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCcccccc
Confidence 33444567999999999999996 47999999999999999999999999999999999999999999988765 56788
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcC-CCCCCCcc
Q 010709 193 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG-NTSLSRVS 271 (503)
Q Consensus 193 ~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~~l~~~~ 271 (503)
.|+.+||++||||||.|+++.+.++.+.+..+.-+.+.||...+.+...++++++|+|+|||+|++++.+. .+.+.+++
T Consensus 210 ~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LR 289 (708)
T KOG0348|consen 210 DGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLR 289 (708)
T ss_pred CCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeee
Confidence 89999999999999999999999999888778888899999999999999999999999999999999985 56888999
Q ss_pred EEEecchhHHhhCCCHHHHHHHHHhC-------------CCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCC-----
Q 010709 272 FVILDEADRMLDMGFEPQIREVMQNL-------------PDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKV----- 333 (503)
Q Consensus 272 ~vViDEaH~l~~~~~~~~~~~il~~~-------------~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~----- 333 (503)
+||+||+|++++.||...+..|++.+ ++..|.+++|||++..+..++.--+.||+.+..+..
T Consensus 290 wlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~ 369 (708)
T KOG0348|consen 290 WLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLN 369 (708)
T ss_pred EEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcC
Confidence 99999999999999999999998776 224788999999999999999999999988862111
Q ss_pred --------------------CCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHH
Q 010709 334 --------------------SSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEA 393 (503)
Q Consensus 334 --------------------~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~ 393 (503)
......+.|.+..++..-++-.|..++.+...... ..++|||+.+.+.++.-+..
T Consensus 370 p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~-----~qk~iVF~S~~d~VeFHy~l 444 (708)
T KOG0348|consen 370 PKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEE-----KQKMIVFFSCSDSVEFHYSL 444 (708)
T ss_pred cchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhh-----hceeEEEEechhHHHHHHHH
Confidence 12234466778888888888888888877654432 23799999999999999988
Q ss_pred HHH----------------------CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccC
Q 010709 394 LVA----------------------EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDL 451 (503)
Q Consensus 394 L~~----------------------~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~ 451 (503)
|.. .+.++..+||+|+|++|..+++.|...+..||+|||+++||+|+|+|++||.||+
T Consensus 445 f~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~ 524 (708)
T KOG0348|consen 445 FSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDP 524 (708)
T ss_pred HHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCC
Confidence 864 2357899999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHhhCcceee
Q 010709 452 PKVLLAASESLCTTSFN 468 (503)
Q Consensus 452 p~s~~~~~Qr~GR~gR~ 468 (503)
|.+.++|+||+||+.|.
T Consensus 525 P~s~adylHRvGRTARa 541 (708)
T KOG0348|consen 525 PFSTADYLHRVGRTARA 541 (708)
T ss_pred CCCHHHHHHHhhhhhhc
Confidence 99999999999997774
No 26
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-56 Score=457.63 Aligned_cols=381 Identities=43% Similarity=0.662 Sum_probs=356.2
Q ss_pred CCccCCCCCCCcccCCCHHHHHHHHHHcC-ceEEecCCCCCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH
Q 010709 76 QPVFNNWKPSDRVLRFNPEQIEEVRLRLN-VDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPV 154 (503)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~ 154 (503)
.+...+|.+...+..+..++++.++.... +.++.. ..|.|+.+|...+++..++..++++||..|+++|.+|||+
T Consensus 323 pFRknfy~e~~di~~ms~~eV~~yr~~l~~i~v~g~----~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ 398 (997)
T KOG0334|consen 323 PFRKNFYIEVRDIKRMSAAEVDEYRCELDGIKVKGK----ECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPA 398 (997)
T ss_pred hhhhcccccchhHHHHHHHHHHHhhcCccceeeccC----CCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcch
Confidence 44456777888889998899999988776 777655 8899999999999999999999999999999999999999
Q ss_pred HhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCcc
Q 010709 155 ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTN 234 (503)
Q Consensus 155 i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (503)
++.|+|||.+|.||||||++|++|++.+...++....++||.+||++|||+|+.|+.+.++.|...+ ++.+.+++|+..
T Consensus 399 ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l-~ir~v~vygg~~ 477 (997)
T KOG0334|consen 399 IMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLL-GIRVVCVYGGSG 477 (997)
T ss_pred hccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhc-CceEEEecCCcc
Confidence 9999999999999999999999999999999999888899999999999999999999999999886 699999999999
Q ss_pred HHHHHHHhhCCCcEEEECcHHHHHHHHcCCC---CCCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCC
Q 010709 235 IAEQRSELRGGVSIVVATPGRFLDHLQQGNT---SLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMP 311 (503)
Q Consensus 235 ~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~---~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~ 311 (503)
..++...++.++.|+|||||+.++.+..+.. ++.++.++|+||||+|.+++|.++...|+..+++.+|++++|||+|
T Consensus 478 ~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfp 557 (997)
T KOG0334|consen 478 ISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFP 557 (997)
T ss_pred HHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhh
Confidence 9999999999999999999999999887654 4555669999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcC-hhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHH
Q 010709 312 VEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVS-ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEV 390 (503)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l 390 (503)
..+..++...+..|+.+.++........+.+.+..+. ..+|...|..++..... .+++||||..++.|+.+
T Consensus 558 r~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e--------~~~tiiFv~~qe~~d~l 629 (997)
T KOG0334|consen 558 RSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYE--------DGKTIIFVDKQEKADAL 629 (997)
T ss_pred HHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhh--------cCCEEEEEcCchHHHHH
Confidence 9999999999999999999988889999999999998 88999999999988754 45799999999999999
Q ss_pred HHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCcceeee
Q 010709 391 SEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFNI 469 (503)
Q Consensus 391 ~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~~ 469 (503)
.+.|.+.|+.+..+||+.++.+|..+++.|++|.+.+||||+++++|+|++.+.+|||||+|...++|+||.||+||+-
T Consensus 630 ~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgrag 708 (997)
T KOG0334|consen 630 LRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAG 708 (997)
T ss_pred HHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998853
No 27
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.4e-54 Score=435.58 Aligned_cols=335 Identities=34% Similarity=0.531 Sum_probs=294.2
Q ss_pred CcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEE
Q 010709 119 PIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLAL 198 (503)
Q Consensus 119 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~l 198 (503)
...+|+++++++.+.+.+..+||..|+++|.++|+.+++|+|+++++|||+|||++|++|++..+... ..++++|
T Consensus 26 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~-----~~~~~~l 100 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD-----LNACQAL 100 (401)
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC-----CCCceEE
Confidence 35679999999999999999999999999999999999999999999999999999999999876432 2357899
Q ss_pred EEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecch
Q 010709 199 VLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEA 278 (503)
Q Consensus 199 il~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEa 278 (503)
|++|+++|+.|+.+.+..++... .+.+..+.|+....+....+..+++|+|+||+++.+++.+....++++++||||||
T Consensus 101 il~Pt~~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEa 179 (401)
T PTZ00424 101 ILAPTRELAQQIQKVVLALGDYL-KVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEA 179 (401)
T ss_pred EECCCHHHHHHHHHHHHHHhhhc-CceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecH
Confidence 99999999999999999988654 46777888988887777777788999999999999999887788999999999999
Q ss_pred hHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChh-hHHHHHH
Q 010709 279 DRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSEN-EKVDRLL 357 (503)
Q Consensus 279 H~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~k~~~l~ 357 (503)
|++.+.++...+..++..+++..|++++|||+++.+..+...++.+|..+.+.........+.+.+..+... .+...+.
T Consensus 180 h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 259 (401)
T PTZ00424 180 DEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLC 259 (401)
T ss_pred HHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988876665555555666666665543 2333333
Q ss_pred HHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccC
Q 010709 358 ALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRG 437 (503)
Q Consensus 358 ~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 437 (503)
..+.. ....++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|
T Consensus 260 ~~~~~---------~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~G 330 (401)
T PTZ00424 260 DLYET---------LTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARG 330 (401)
T ss_pred HHHHh---------cCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCC
Confidence 33321 234579999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 438 LDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 438 ldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
+|+|++++||++|+|.+...|+||+||+||.
T Consensus 331 iDip~v~~VI~~~~p~s~~~y~qr~GRagR~ 361 (401)
T PTZ00424 331 IDVQQVSLVINYDLPASPENYIHRIGRSGRF 361 (401)
T ss_pred cCcccCCEEEEECCCCCHHHEeecccccccC
Confidence 9999999999999999999999999999994
No 28
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.4e-56 Score=410.40 Aligned_cols=341 Identities=32% Similarity=0.494 Sum_probs=310.6
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCC-CCCCCCeEEE
Q 010709 121 ESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPV-GRGDGPLALV 199 (503)
Q Consensus 121 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~-~~~~~~~~li 199 (503)
.+|++++|++.+++++...||.+||-+|..+||.+++|+|++..|.||||||.+|++|+++.++..... ....++.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 579999999999999999999999999999999999999999999999999999999999999988765 4557899999
Q ss_pred EcccHHHHHHHHHHHHHHhccCC-CceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCC-CCCCCccEEEecc
Q 010709 200 LAPTRELAQQIEKEVKALSRSLD-SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN-TSLSRVSFVILDE 277 (503)
Q Consensus 200 l~Ptr~La~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~-~~l~~~~~vViDE 277 (503)
++||+|||+|++..+.++...+. .+++.-+..+.+.......+...++|+|+||++++.++..+. ..+..++++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 99999999999999998876654 466666666666666667778889999999999999999876 5788999999999
Q ss_pred hhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCC-CCceEEEEEEcChhhHHHHH
Q 010709 278 ADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSP-TANVIQILEKVSENEKVDRL 356 (503)
Q Consensus 278 aH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~~l 356 (503)
||-++..||...+..+...+|+..|.++||||+..++..+-+.++++|+.+.+.....+ ...+.|++..+...+|...+
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflll 258 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLL 258 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999888766644 45688999999999999998
Q ss_pred HHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc----
Q 010709 357 LALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD---- 432 (503)
Q Consensus 357 ~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~---- 432 (503)
+.+++..... +|.|||+|+.+.|..+.-+|.+.|++.+.+.|.||...|..++++|..|-.+|+||||
T Consensus 259 yallKL~LI~--------gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~ 330 (569)
T KOG0346|consen 259 YALLKLRLIR--------GKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSAD 330 (569)
T ss_pred HHHHHHHHhc--------CceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccc
Confidence 8888776544 5799999999999999999999999999999999999999999999999999999999
Q ss_pred -------------------------------ccccCCCCCCCCEEEEccCCCChhHHHHhhCcceeee
Q 010709 433 -------------------------------VASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFNI 469 (503)
Q Consensus 433 -------------------------------~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~~ 469 (503)
-.+||||+..|.+|+|||+|.+...|+||+||++|..
T Consensus 331 ~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~ 398 (569)
T KOG0346|consen 331 GDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGN 398 (569)
T ss_pred hhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCC
Confidence 2468999999999999999999999999999999954
No 29
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.3e-55 Score=413.94 Aligned_cols=341 Identities=30% Similarity=0.494 Sum_probs=285.4
Q ss_pred CCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CCeEEEccCCCchhHHhHHHHHHHHHhcCCC------
Q 010709 117 PAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPV------ 189 (503)
Q Consensus 117 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~-~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~------ 189 (503)
+..+..|..++++..++++|...||..|+++|...+|++..| .|++..|.||||||++|-+|++..+......
T Consensus 177 ~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~ 256 (731)
T KOG0347|consen 177 KVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSN 256 (731)
T ss_pred ccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhh
Confidence 445667999999999999999999999999999999999999 6899999999999999999999954432211
Q ss_pred --CCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCC--
Q 010709 190 --GRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT-- 265 (503)
Q Consensus 190 --~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~-- 265 (503)
.....+..||++|||+||.|+.+-+..+.... ++++..++||.....+.+.+...++|+|+|||+|+.++.....
T Consensus 257 ~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t-~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l 335 (731)
T KOG0347|consen 257 TSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKT-QIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHL 335 (731)
T ss_pred HHhccCcceeEEecChHHHHHHHHHHHHHhcccc-CeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhh
Confidence 11123349999999999999999999998765 6999999999999999999999999999999999999988654
Q ss_pred -CCCCccEEEecchhHHhhCCCHHHHHHHHHhCC-----CCCcEEEEEeeCCHHH---------------------HHHH
Q 010709 266 -SLSRVSFVILDEADRMLDMGFEPQIREVMQNLP-----DKHQTLLFSATMPVEI---------------------EALA 318 (503)
Q Consensus 266 -~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~-----~~~q~i~~SAT~~~~~---------------------~~~~ 318 (503)
.+.+++++|+||+|+|++.|.-..+..++..+. ..+|.+.||||++-.. +.++
T Consensus 336 ~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lm 415 (731)
T KOG0347|consen 336 GNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLM 415 (731)
T ss_pred hhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHH
Confidence 577889999999999999998888888887764 4689999999994221 1122
Q ss_pred H--HhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHH
Q 010709 319 Q--EYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVA 396 (503)
Q Consensus 319 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~ 396 (503)
+ .+..+|..+...........+....+.|+..+|-.+++.++.. -+|++|||||+...+.+|+-+|..
T Consensus 416 k~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~r----------yPGrTlVF~NsId~vKRLt~~L~~ 485 (731)
T KOG0347|consen 416 KKIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTR----------YPGRTLVFCNSIDCVKRLTVLLNN 485 (731)
T ss_pred HHhCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEee----------cCCceEEEechHHHHHHHHHHHhh
Confidence 2 2345666665555444444444455555555555555444433 357799999999999999999999
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 397 EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 397 ~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
.++....+|+.|.|++|.+.+++|++..-.||||||+++||+|||+|.|||||-.|++.+.|+||.||+.|.
T Consensus 486 L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA 557 (731)
T KOG0347|consen 486 LDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARA 557 (731)
T ss_pred cCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999884
No 30
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-52 Score=377.48 Aligned_cols=339 Identities=28% Similarity=0.437 Sum_probs=296.5
Q ss_pred CCCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CCeEEEccCCCchhHHhHHHHHHHHHhcCCCC
Q 010709 113 SVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVG 190 (503)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~--~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~ 190 (503)
+..+-....+|+++.|.|++++.+..++|.+|+.+|..++|.++.. ++.|..+..|+|||.||.+.+|.++...
T Consensus 82 pnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~---- 157 (477)
T KOG0332|consen 82 PNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD---- 157 (477)
T ss_pred CCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc----
Confidence 3355567789999999999999999999999999999999999976 6799999999999999999999875442
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHc-CCCCCCC
Q 010709 191 RGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ-GNTSLSR 269 (503)
Q Consensus 191 ~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~-~~~~l~~ 269 (503)
...|.++.|+|+|+||.|+-+.+.+.++.. ++.......+....+.. .-..+|+++|||.+.+++.+ ..+.+.+
T Consensus 158 -~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~-~ita~yair~sk~~rG~---~i~eqIviGTPGtv~Dlm~klk~id~~k 232 (477)
T KOG0332|consen 158 -VVVPQCICLAPTRELAPQTGEVVEEMGKFT-ELTASYAIRGSKAKRGN---KLTEQIVIGTPGTVLDLMLKLKCIDLEK 232 (477)
T ss_pred -ccCCCceeeCchHHHHHHHHHHHHHhcCce-eeeEEEEecCcccccCC---cchhheeeCCCccHHHHHHHHHhhChhh
Confidence 235889999999999999999999999876 56666665554211110 01257999999999999987 6678899
Q ss_pred ccEEEecchhHHhhC-CCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcC
Q 010709 270 VSFVILDEADRMLDM-GFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVS 348 (503)
Q Consensus 270 ~~~vViDEaH~l~~~-~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (503)
++++|+|||+.|++. ||.++-.+|...+++..|++++|||....+..++.....++..+.+........++.|++..|.
T Consensus 233 ikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~ 312 (477)
T KOG0332|consen 233 IKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCA 312 (477)
T ss_pred ceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeecc
Confidence 999999999999887 7999999999999999999999999999999999999999999999999999999999999987
Q ss_pred h-hhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcE
Q 010709 349 E-NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNI 427 (503)
Q Consensus 349 ~-~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~v 427 (503)
. ..|...+..+.... .-+..||||.++..+..++..+...|..|..+||+|...+|..+++.|++|..+|
T Consensus 313 ~~~~K~~~l~~lyg~~---------tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kV 383 (477)
T KOG0332|consen 313 CRDDKYQALVNLYGLL---------TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKV 383 (477)
T ss_pred chhhHHHHHHHHHhhh---------hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceE
Confidence 5 45666666644332 2345899999999999999999999999999999999999999999999999999
Q ss_pred EEEccccccCCCCCCCCEEEEccCCC------ChhHHHHhhCcceeee
Q 010709 428 LVATDVASRGLDVMGVAHVVNLDLPK------VLLAASESLCTTSFNI 469 (503)
Q Consensus 428 LvaT~~~~~Gldip~v~~VI~~~~p~------s~~~~~Qr~GR~gR~~ 469 (503)
||+|++.+||||++.|+.|||||+|. +.+.|+|||||+||.-
T Consensus 384 LitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFG 431 (477)
T KOG0332|consen 384 LITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFG 431 (477)
T ss_pred EEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhccccccc
Confidence 99999999999999999999999995 5699999999999953
No 31
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-52 Score=384.28 Aligned_cols=349 Identities=35% Similarity=0.583 Sum_probs=316.1
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEE
Q 010709 120 IESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (503)
Q Consensus 120 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~li 199 (503)
+.+|++++|.+.|++.++.+||.+|+.+|+.||..+..|.|+++.+++|+|||.+|.+++++.+... .....+++
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~-----~ke~qali 99 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS-----VKETQALI 99 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcc-----hHHHHHHH
Confidence 4479999999999999999999999999999999999999999999999999999999999875332 23466899
Q ss_pred EcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHh-hCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecch
Q 010709 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL-RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEA 278 (503)
Q Consensus 200 l~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEa 278 (503)
++|+|+||.|+.+....++... ++.+..+.||.....+...+ ...++|+++|||++.+++....+....+++.|+|||
T Consensus 100 laPtreLa~qi~~v~~~lg~~~-~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEa 178 (397)
T KOG0327|consen 100 LAPTRELAQQIQKVVRALGDHM-DVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEA 178 (397)
T ss_pred hcchHHHHHHHHHHHHhhhccc-ceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecch
Confidence 9999999999999999998776 58888888888776444434 456899999999999999998888888999999999
Q ss_pred hHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHH
Q 010709 279 DRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLA 358 (503)
Q Consensus 279 H~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 358 (503)
+.++..+|..++..++..++++.|++++|||.|.++....+.|+.+|+.+.+.........+.+++..+...+|+..++.
T Consensus 179 DEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~d 258 (397)
T KOG0327|consen 179 DEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTLCD 258 (397)
T ss_pred HhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999988888889999999999999999988
Q ss_pred HHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCC
Q 010709 359 LLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGL 438 (503)
Q Consensus 359 ~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gl 438 (503)
+.. ... ..+||||+++.+..+...|...++.+..+|+.+.+.+|..+++.|+.|..+|||+|+.+++|+
T Consensus 259 l~~-~~~----------q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argi 327 (397)
T KOG0327|consen 259 LYR-RVT----------QAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGI 327 (397)
T ss_pred HHH-hhh----------cceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeecccccccc
Confidence 887 222 389999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEccCCCChhHHHHhhCccee--------eeeeccC-chhhhhhHHHH
Q 010709 439 DVMGVAHVVNLDLPKVLLAASESLCTTSF--------NITTNLD-GDMKKLEFCLI 485 (503)
Q Consensus 439 dip~v~~VI~~~~p~s~~~~~Qr~GR~gR--------~~~~~~~-~~~~~~~~~~~ 485 (503)
|+..+..||||++|....+|+||+||+|| ++.+..+ .++..++.+|.
T Consensus 328 dv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~ 383 (397)
T KOG0327|consen 328 DVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYN 383 (397)
T ss_pred chhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcC
Confidence 99999999999999999999999999999 3455555 77777776653
No 32
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.3e-50 Score=427.17 Aligned_cols=319 Identities=24% Similarity=0.300 Sum_probs=253.1
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHH
Q 010709 127 CLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (503)
Q Consensus 127 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~L 206 (503)
.+++.+.+.|+..||..|+++|.++++.+++|+|+++++|||||||++|++|++..+... .+.++|||+|||+|
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~------~~~~aL~l~PtraL 93 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD------PRATALYLAPTKAL 93 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC------CCcEEEEEcChHHH
Confidence 378999999999999999999999999999999999999999999999999999988653 25789999999999
Q ss_pred HHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcC----CCCCCCccEEEecchhHHh
Q 010709 207 AQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG----NTSLSRVSFVILDEADRML 282 (503)
Q Consensus 207 a~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~----~~~l~~~~~vViDEaH~l~ 282 (503)
+.|+.+.++++. ..++++..+.|++.. ++...+..+++|+|+||++|...+... ...++++++|||||||++.
T Consensus 94 a~q~~~~l~~l~--~~~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~ 170 (742)
T TIGR03817 94 AADQLRAVRELT--LRGVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYR 170 (742)
T ss_pred HHHHHHHHHHhc--cCCeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhcc
Confidence 999999999987 235778777777764 444566677999999999997544321 1237889999999999987
Q ss_pred hCCCHHHHHHHHHh-------CCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcC-------
Q 010709 283 DMGFEPQIREVMQN-------LPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVS------- 348 (503)
Q Consensus 283 ~~~~~~~~~~il~~-------~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 348 (503)
+. |+..+..++.+ .+.++|++++|||+++..+ .+..+++.+..+ +.....+.......+....
T Consensus 171 g~-fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~~~~~~~~~~~~~~p~~~~~~~~ 247 (742)
T TIGR03817 171 GV-FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTEDGSPRGARTVALWEPPLTELTGE 247 (742)
T ss_pred Cc-cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCCCCCcCceEEEEecCCccccccc
Confidence 63 66665554443 4567899999999988765 677788877654 3332222222222111111
Q ss_pred ---------hhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHC--------CCeEEEEcCCCCHH
Q 010709 349 ---------ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE--------GLHAVALHGGRNQS 411 (503)
Q Consensus 349 ---------~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~--------~~~v~~lh~~~~~~ 411 (503)
...+...+..++. ...++||||++++.++.++..|+.. +..+..+||+++++
T Consensus 248 ~~~~~r~~~~~~~~~~l~~l~~-----------~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~ 316 (742)
T TIGR03817 248 NGAPVRRSASAEAADLLADLVA-----------EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPE 316 (742)
T ss_pred cccccccchHHHHHHHHHHHHH-----------CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHH
Confidence 0112222222221 1246999999999999999998763 56788999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 412 DRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 412 ~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
+|.++++.|++|++++||||+++++|||||++++||++|+|.+..+|+||+||+||.
T Consensus 317 eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~ 373 (742)
T TIGR03817 317 DRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRR 373 (742)
T ss_pred HHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCC
Confidence 999999999999999999999999999999999999999999999999999999994
No 33
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=2.9e-51 Score=394.72 Aligned_cols=339 Identities=27% Similarity=0.443 Sum_probs=306.1
Q ss_pred CCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCC
Q 010709 115 PAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDG 194 (503)
Q Consensus 115 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~ 194 (503)
..+.....|+.+.+...++..|+..+|..|+++|..|||.++.+-|+||.+..|+|||++|.+.++..+.-. ...
T Consensus 19 V~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~-----~~~ 93 (980)
T KOG4284|consen 19 VQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSR-----SSH 93 (980)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcc-----cCc
Confidence 345566789999999999999999999999999999999999999999999999999999988777665432 346
Q ss_pred CeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEE
Q 010709 195 PLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVI 274 (503)
Q Consensus 195 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vV 274 (503)
+.++|++|||++|.|+.+.+.+++..+.++++..+.||+........+. .++|+|+|||++.+++..+.+++..++++|
T Consensus 94 ~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~el~~~n~s~vrlfV 172 (980)
T KOG4284|consen 94 IQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVELGAMNMSHVRLFV 172 (980)
T ss_pred ceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHHhcCCCccceeEEE
Confidence 7899999999999999999999999888999999999999887766664 489999999999999999999999999999
Q ss_pred ecchhHHhhC-CCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhh--
Q 010709 275 LDEADRMLDM-GFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENE-- 351 (503)
Q Consensus 275 iDEaH~l~~~-~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 351 (503)
+||||.+++. .|...+..|+..+|..+|++++|||.|.++.+.+.+|+++|..+...........+.|++.......
T Consensus 173 LDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nns 252 (980)
T KOG4284|consen 173 LDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNS 252 (980)
T ss_pred eccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcch
Confidence 9999999985 6999999999999999999999999999999999999999999999888888888899888776432
Q ss_pred ------HHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCC
Q 010709 352 ------KVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGST 425 (503)
Q Consensus 352 ------k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~ 425 (503)
|++.|-+++.. -|....||||+....|+.++.+|...|+.|.++.|.|+|.+|..+++.++.-.+
T Consensus 253 veemrlklq~L~~vf~~---------ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~ 323 (980)
T KOG4284|consen 253 VEEMRLKLQKLTHVFKS---------IPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRV 323 (980)
T ss_pred HHHHHHHHHHHHHHHhh---------CchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceE
Confidence 33333332222 355569999999999999999999999999999999999999999999999999
Q ss_pred cEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 426 NILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 426 ~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
+|||+|++.+||||-++|++|||.|+|.+...|.||||||||.
T Consensus 324 rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRF 366 (980)
T KOG4284|consen 324 RILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRF 366 (980)
T ss_pred EEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccc
Confidence 9999999999999999999999999999999999999999994
No 34
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-51 Score=376.17 Aligned_cols=337 Identities=37% Similarity=0.519 Sum_probs=315.1
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEE
Q 010709 120 IESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (503)
Q Consensus 120 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~li 199 (503)
...|..++|+..+++++.+.||+.|+|+|+..+|.++++++++..+-||+|||.||++|+++++.... ..|-++++
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s----~~g~Rali 95 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS----QTGLRALI 95 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc----ccccceee
Confidence 45699999999999999999999999999999999999999999999999999999999999987652 34678999
Q ss_pred EcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchh
Q 010709 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD 279 (503)
Q Consensus 200 l~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH 279 (503)
+.|||+|+.|..+.++.+++.. +++..+++||....+++..+..++||+++||+++..+.-...+.++.+.|||+||++
T Consensus 96 lsptreLa~qtlkvvkdlgrgt-~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEad 174 (529)
T KOG0337|consen 96 LSPTRELALQTLKVVKDLGRGT-KLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEAD 174 (529)
T ss_pred ccCcHHHHHHHHHHHHHhcccc-chhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhh
Confidence 9999999999999999999877 599999999999999999999999999999999988877777889999999999999
Q ss_pred HHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHH
Q 010709 280 RMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLAL 359 (503)
Q Consensus 280 ~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 359 (503)
++..+||..++.+++.+++...|.++||||+|..+.++++.-+.+|+.+.++-.......+...+..+...+|...|+.+
T Consensus 175 rlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~i 254 (529)
T KOG0337|consen 175 RLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLSI 254 (529)
T ss_pred HHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888888888888889999999999999988
Q ss_pred HHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCC
Q 010709 360 LVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLD 439 (503)
Q Consensus 360 l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gld 439 (503)
+..... ...++|||.++..++.+...|+..|+.+..++|.+.+..|...+..|..++..+||.|++++||+|
T Consensus 255 l~~~~~--------~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~d 326 (529)
T KOG0337|consen 255 LGGRIK--------DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLD 326 (529)
T ss_pred Hhcccc--------ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCC
Confidence 876542 335999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEccCCCChhHHHHhhCcceeee
Q 010709 440 VMGVAHVVNLDLPKVLLAASESLCTTSFNI 469 (503)
Q Consensus 440 ip~v~~VI~~~~p~s~~~~~Qr~GR~gR~~ 469 (503)
||..+.|||||+|.+..-|.||+||+.|..
T Consensus 327 iplldnvinyd~p~~~klFvhRVgr~arag 356 (529)
T KOG0337|consen 327 IPLLDNVINYDFPPDDKLFVHRVGRVARAG 356 (529)
T ss_pred CccccccccccCCCCCceEEEEecchhhcc
Confidence 999999999999999999999999966644
No 35
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=2.1e-48 Score=407.24 Aligned_cols=315 Identities=19% Similarity=0.247 Sum_probs=242.8
Q ss_pred CCCCHHHHHHHH-HCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccH
Q 010709 126 MCLHPSIMKDIE-FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR 204 (503)
Q Consensus 126 ~~l~~~l~~~l~-~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr 204 (503)
++....+...++ .+|+..++++|.++|+.++.|+|+++++|||+|||+||++|++.. ++.+|||+|++
T Consensus 442 fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~-----------~GiTLVISPLi 510 (1195)
T PLN03137 442 FPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC-----------PGITLVISPLV 510 (1195)
T ss_pred CCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc-----------CCcEEEEeCHH
Confidence 455555655554 479999999999999999999999999999999999999999864 45699999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhh------CCCcEEEECcHHHHH--HHHcC---CCCCCCccEE
Q 010709 205 ELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELR------GGVSIVVATPGRFLD--HLQQG---NTSLSRVSFV 273 (503)
Q Consensus 205 ~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~Ilv~Tp~~l~~--~l~~~---~~~l~~~~~v 273 (503)
+|+.++...+... ++....+.++....++...+. ...+|+|+||++|.. .+.+. ......+.+|
T Consensus 511 SLmqDQV~~L~~~-----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslI 585 (1195)
T PLN03137 511 SLIQDQIMNLLQA-----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARF 585 (1195)
T ss_pred HHHHHHHHHHHhC-----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhcccccee
Confidence 9998655555443 477888888887766544332 468999999999852 12211 1123458899
Q ss_pred EecchhHHhhCC--CHHHHHHH--HHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcCh
Q 010709 274 ILDEADRMLDMG--FEPQIREV--MQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSE 349 (503)
Q Consensus 274 ViDEaH~l~~~~--~~~~~~~i--l~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (503)
||||||++.+|| |++.+..+ +....+..+++++|||++..+...+...+.....+.+. ......++...+ +..
T Consensus 586 VIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr-~Sf~RpNL~y~V--v~k 662 (1195)
T PLN03137 586 VIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFR-QSFNRPNLWYSV--VPK 662 (1195)
T ss_pred ccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEee-cccCccceEEEE--ecc
Confidence 999999999987 88887764 44444578899999999999887666665432211111 112223332222 222
Q ss_pred hhH-HHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEE
Q 010709 350 NEK-VDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNIL 428 (503)
Q Consensus 350 ~~k-~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vL 428 (503)
..+ ...+..++... ......||||.+++.|+.+++.|...|+.+..+||+|++.+|..+++.|..|+++||
T Consensus 663 ~kk~le~L~~~I~~~--------~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VL 734 (1195)
T PLN03137 663 TKKCLEDIDKFIKEN--------HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINII 734 (1195)
T ss_pred chhHHHHHHHHHHhc--------ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEE
Confidence 222 23333333321 223468999999999999999999999999999999999999999999999999999
Q ss_pred EEccccccCCCCCCCCEEEEccCCCChhHHHHhhCccee
Q 010709 429 VATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSF 467 (503)
Q Consensus 429 vaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR 467 (503)
|||+++++|||+|+|++||+|++|++++.|+||+|||||
T Consensus 735 VATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGR 773 (1195)
T PLN03137 735 CATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGR 773 (1195)
T ss_pred EEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCC
Confidence 999999999999999999999999999999999999999
No 36
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.2e-49 Score=379.88 Aligned_cols=355 Identities=31% Similarity=0.465 Sum_probs=297.3
Q ss_pred HHHHcCceEEecCCCCCCCCCcCCcccC----CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHH
Q 010709 99 VRLRLNVDVTVASGSVPAPAPIESFTDM----CLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAA 174 (503)
Q Consensus 99 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~----~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~ 174 (503)
.|..+.+.+.+ ...|.++.+|.++ ..++.+++++...+|..|+++|.+++|.++++++++.|+|||+|||++
T Consensus 114 ~Rk~~k~~v~G----~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtla 189 (593)
T KOG0344|consen 114 IRKSNKINVDG----FHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLA 189 (593)
T ss_pred chhcceeeccC----CCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhh
Confidence 34444444443 3778999999984 689999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHh--ccCCCceEEEEECC-ccHHHHHHHhhCCCcEEEE
Q 010709 175 FTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS--RSLDSFKTAIVVGG-TNIAEQRSELRGGVSIVVA 251 (503)
Q Consensus 175 ~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Ilv~ 251 (503)
|.+|++.++..........|-+++|+.|+|+||.|+++++.++. .... ..+..+... .............++|++.
T Consensus 190 f~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~-~~a~~~~~~~~~~qk~a~~~~~k~dili~ 268 (593)
T KOG0344|consen 190 FNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTS-LRAAQFSKPAYPSQKPAFLSDEKYDILIS 268 (593)
T ss_pred hhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCc-hhhhhcccccchhhccchhHHHHHHHHhc
Confidence 99999999887654344567889999999999999999999998 3332 222222222 1111111222245899999
Q ss_pred CcHHHHHHHHcCC--CCCCCccEEEecchhHHhhC-CCHHHHHHHHHhCC-CCCcEEEEEeeCCHHHHHHHHHhcCCCeE
Q 010709 252 TPGRFLDHLQQGN--TSLSRVSFVILDEADRMLDM-GFEPQIREVMQNLP-DKHQTLLFSATMPVEIEALAQEYLTDPVQ 327 (503)
Q Consensus 252 Tp~~l~~~l~~~~--~~l~~~~~vViDEaH~l~~~-~~~~~~~~il~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~~~ 327 (503)
||-++...+..+. ..+..+.++|+||||++.+. .|..++..|+..+. ++..+-+||||.+..++++++....++..
T Consensus 269 TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~ 348 (593)
T KOG0344|consen 269 TPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKR 348 (593)
T ss_pred CHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhcccee
Confidence 9999999998765 67899999999999999998 89999999988775 46677789999999999999999999999
Q ss_pred EEeCCCCCCCCceEEEEEEcC-hhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHH-HHCCCeEEEEc
Q 010709 328 VKVGKVSSPTANVIQILEKVS-ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEAL-VAEGLHAVALH 405 (503)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L-~~~~~~v~~lh 405 (503)
+.++........+.|....+. ...|+..+.+++... -.+++|||+.+.+.|.+|.+.| .-.++++..+|
T Consensus 349 vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g---------~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh 419 (593)
T KOG0344|consen 349 VIVGLRNSANETVDQELVFCGSEKGKLLALRQLVASG---------FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIH 419 (593)
T ss_pred EEEecchhHhhhhhhhheeeecchhHHHHHHHHHhcc---------CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEe
Confidence 999888777777777766664 445666666666542 4567999999999999999999 66789999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCccee
Q 010709 406 GGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSF 467 (503)
Q Consensus 406 ~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR 467 (503)
|+.++.+|.+.++.|+.|+++|||||++++||+|+.++++|||||+|.+..+|+||+||+||
T Consensus 420 ~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgR 481 (593)
T KOG0344|consen 420 GERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGR 481 (593)
T ss_pred cccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999988
No 37
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=6.3e-48 Score=391.60 Aligned_cols=304 Identities=18% Similarity=0.284 Sum_probs=236.5
Q ss_pred HHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q 010709 137 EFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (503)
Q Consensus 137 ~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 216 (503)
..+||..|+|+|.++++.+++|+|+++++|||+|||++|++|++.. ++.+||++|+++|+.|+.+.++.
T Consensus 5 ~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~-----------~~~~lVi~P~~~L~~dq~~~l~~ 73 (470)
T TIGR00614 5 TVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS-----------DGITLVISPLISLMEDQVLQLKA 73 (470)
T ss_pred hhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc-----------CCcEEEEecHHHHHHHHHHHHHH
Confidence 3579999999999999999999999999999999999999998853 45689999999999999888876
Q ss_pred HhccCCCceEEEEECCccHHHHHHH----hhCCCcEEEECcHHHHHHH-HcCCC-CCCCccEEEecchhHHhhCC--CHH
Q 010709 217 LSRSLDSFKTAIVVGGTNIAEQRSE----LRGGVSIVVATPGRFLDHL-QQGNT-SLSRVSFVILDEADRMLDMG--FEP 288 (503)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ilv~Tp~~l~~~l-~~~~~-~l~~~~~vViDEaH~l~~~~--~~~ 288 (503)
+ ++.+..+.++....+.... ..+..+|+++||+++.... ....+ ...++++|||||||++.++| |..
T Consensus 74 ~-----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~ 148 (470)
T TIGR00614 74 S-----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRP 148 (470)
T ss_pred c-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHH
Confidence 5 3667777777665533221 2345899999999975322 11112 46789999999999998876 677
Q ss_pred HHHHH--HHhCCCCCcEEEEEeeCCHHHHHHHHHhc--CCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHH
Q 010709 289 QIREV--MQNLPDKHQTLLFSATMPVEIEALAQEYL--TDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEA 364 (503)
Q Consensus 289 ~~~~i--l~~~~~~~q~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~ 364 (503)
.+..+ +....++.+++++|||+++.+...+...+ .+|..+... ....++...+.. ........+...+...
T Consensus 149 ~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s---~~r~nl~~~v~~-~~~~~~~~l~~~l~~~- 223 (470)
T TIGR00614 149 DYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTS---FDRPNLYYEVRR-KTPKILEDLLRFIRKE- 223 (470)
T ss_pred HHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC---CCCCCcEEEEEe-CCccHHHHHHHHHHHh-
Confidence 76654 33333577899999999998776665554 344443322 122223222222 1123344444444331
Q ss_pred HhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCC
Q 010709 365 FLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVA 444 (503)
Q Consensus 365 ~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~ 444 (503)
.+...+||||++++.|+.+++.|...|+.+..+||+|++++|..+++.|++|+.+|||||+++++|||+|+|+
T Consensus 224 -------~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~ 296 (470)
T TIGR00614 224 -------FKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVR 296 (470)
T ss_pred -------cCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccce
Confidence 2334579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCChhHHHHhhCcceee
Q 010709 445 HVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 445 ~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
+||++++|++++.|+||+||+||.
T Consensus 297 ~VI~~~~P~s~~~y~Qr~GRaGR~ 320 (470)
T TIGR00614 297 FVIHYSLPKSMESYYQESGRAGRD 320 (470)
T ss_pred EEEEeCCCCCHHHHHhhhcCcCCC
Confidence 999999999999999999999993
No 38
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.1e-48 Score=361.26 Aligned_cols=336 Identities=27% Similarity=0.377 Sum_probs=273.2
Q ss_pred CcCCcccCCCCHHHH----------HHHHHCCCCCCcHHHHHHHHHHhc---------CCCeEEEccCCCchhHHhHHHH
Q 010709 119 PIESFTDMCLHPSIM----------KDIEFHEYTRPTSIQAQAMPVALS---------GRDLLGCAETGSGKTAAFTIPM 179 (503)
Q Consensus 119 ~~~~~~~~~l~~~l~----------~~l~~~~~~~~~~~Q~~~i~~i~~---------~~~vii~~~TGsGKTl~~~lp~ 179 (503)
....|+.+++++... ..+.++++.+..|+|...+|+++. .+|++|.||||||||++|.+|+
T Consensus 125 slq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPI 204 (620)
T KOG0350|consen 125 SLQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPI 204 (620)
T ss_pred ceeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHH
Confidence 333455555555444 448899999999999999999862 5799999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCC-----CcEEEECcH
Q 010709 180 IQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGG-----VSIVVATPG 254 (503)
Q Consensus 180 l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~Ilv~Tp~ 254 (503)
++.+..++ -+.-++|||+|+++|+.|+++.|.++.... ++.++...|.....++...+.+. .+|+|+|||
T Consensus 205 VQ~L~~R~----v~~LRavVivPtr~L~~QV~~~f~~~~~~t-gL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPG 279 (620)
T KOG0350|consen 205 VQLLSSRP----VKRLRAVVIVPTRELALQVYDTFKRLNSGT-GLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPG 279 (620)
T ss_pred HHHHccCC----ccceEEEEEeeHHHHHHHHHHHHHHhccCC-ceEEEecccccchHHHHHHHhcCCCccccceEEcCch
Confidence 99876653 123679999999999999999999999776 58899999998888877777643 489999999
Q ss_pred HHHHHHHc-CCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhCC----------------------------------C
Q 010709 255 RFLDHLQQ-GNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP----------------------------------D 299 (503)
Q Consensus 255 ~l~~~l~~-~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~----------------------------------~ 299 (503)
+|.+++.+ ..+.+++++++||||||||++..|..++-.++..+. +
T Consensus 280 RLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~ 359 (620)
T KOG0350|consen 280 RLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYP 359 (620)
T ss_pred HHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCc
Confidence 99999995 468999999999999999998877777665543331 2
Q ss_pred CCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCC----CCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCC
Q 010709 300 KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGK----VSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFP 375 (503)
Q Consensus 300 ~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~ 375 (503)
+.+.+.+|||+......+..--+..|..+.+.. .......+.+....+....+...++.++.... ..
T Consensus 360 ~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k---------~~ 430 (620)
T KOG0350|consen 360 PLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNK---------LN 430 (620)
T ss_pred hhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhh---------cc
Confidence 345788899998777777777778886665543 22334444555555566566677777776543 33
Q ss_pred cEEEEEcchhhHHHHHHHHH----HCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccC
Q 010709 376 LTIVFVERKTRCDEVSEALV----AEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDL 451 (503)
Q Consensus 376 ~~lIF~~~~~~~~~l~~~L~----~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~ 451 (503)
++|+|+++.+.+.++++.|. ....++-.+.|++.++.|.+.++.|..|++++|||+|+++||+|+.+++.|||||+
T Consensus 431 r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~ 510 (620)
T KOG0350|consen 431 RTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDP 510 (620)
T ss_pred eEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCC
Confidence 69999999999999999887 33567777999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHhhCcceee
Q 010709 452 PKVLLAASESLCTTSFN 468 (503)
Q Consensus 452 p~s~~~~~Qr~GR~gR~ 468 (503)
|.+...|+||+||++|.
T Consensus 511 P~~~ktyVHR~GRTARA 527 (620)
T KOG0350|consen 511 PASDKTYVHRAGRTARA 527 (620)
T ss_pred CchhhHHHHhhcccccc
Confidence 99999999999998874
No 39
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.7e-46 Score=403.66 Aligned_cols=331 Identities=20% Similarity=0.244 Sum_probs=245.7
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCC-CCCCeEEEEcccHHH
Q 010709 128 LHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGR-GDGPLALVLAPTREL 206 (503)
Q Consensus 128 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~-~~~~~~lil~Ptr~L 206 (503)
+++.+.+.+. .+|..|+++|.++++.+++|+|+++++|||+|||++|++|++..+........ ..+.++||++|+++|
T Consensus 18 l~~~v~~~~~-~~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFK-EKFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHH-HccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 4555555544 47899999999999999999999999999999999999999998875432211 346789999999999
Q ss_pred HHHHHHHHHHH-------h----ccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCC--CCCCccEE
Q 010709 207 AQQIEKEVKAL-------S----RSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT--SLSRVSFV 273 (503)
Q Consensus 207 a~q~~~~~~~~-------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~--~l~~~~~v 273 (503)
++|+++.+.+. . ....++.+.+.+|+....+....+...++|+|+||++|..++....+ .+.++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 99998866532 2 22235788999999988877777778899999999999877765433 47889999
Q ss_pred EecchhHHhhCCCHHHHHHHH----HhCCCCCcEEEEEeeCCHHHHHHHHHhcC-------CCeEEEeCCCCCCCCceEE
Q 010709 274 ILDEADRMLDMGFEPQIREVM----QNLPDKHQTLLFSATMPVEIEALAQEYLT-------DPVQVKVGKVSSPTANVIQ 342 (503)
Q Consensus 274 ViDEaH~l~~~~~~~~~~~il----~~~~~~~q~i~~SAT~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 342 (503)
||||+|.+.+..++..+...+ ...+++.|+|++|||+++. ..+...... .+..+ +.........+..
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~~L~~~~~~~~~r~~~i-v~~~~~k~~~i~v 254 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVAKFLVGYEDDGEPRDCEI-VDARFVKPFDIKV 254 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHHHHhcCccccCCCCceEE-EccCCCccceEEE
Confidence 999999998776665554443 3344678999999999652 223322211 12222 1111111111110
Q ss_pred EE-----EEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHC------CCeEEEEcCCCCHH
Q 010709 343 IL-----EKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE------GLHAVALHGGRNQS 411 (503)
Q Consensus 343 ~~-----~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~------~~~v~~lh~~~~~~ 411 (503)
.. ...........+...+..... ..+++||||+++..|+.++..|+.. +..+..+||+++++
T Consensus 255 ~~p~~~l~~~~~~~~~~~l~~~L~~~i~-------~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~ 327 (876)
T PRK13767 255 ISPVDDLIHTPAEEISEALYETLHELIK-------EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSRE 327 (876)
T ss_pred eccCccccccccchhHHHHHHHHHHHHh-------cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHH
Confidence 00 001111122233333332221 2346999999999999999999873 46799999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 412 DRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 412 ~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
+|..+++.|++|+.+|||||+++++|||+|++++||+++.|.++.+|+||+||+||.
T Consensus 328 ~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~ 384 (876)
T PRK13767 328 VRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHR 384 (876)
T ss_pred HHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCC
Confidence 999999999999999999999999999999999999999999999999999999985
No 40
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=2.7e-46 Score=389.12 Aligned_cols=309 Identities=19% Similarity=0.281 Sum_probs=237.3
Q ss_pred HHHHHHHH-HCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHH
Q 010709 130 PSIMKDIE-FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQ 208 (503)
Q Consensus 130 ~~l~~~l~-~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~ 208 (503)
+...+.|+ .+||..|+|+|.++++.+++|+|+++++|||+|||++|++|++.. ++.+||++|+++|+.
T Consensus 11 ~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~-----------~g~tlVisPl~sL~~ 79 (607)
T PRK11057 11 SLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL-----------DGLTLVVSPLISLMK 79 (607)
T ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc-----------CCCEEEEecHHHHHH
Confidence 33334443 379999999999999999999999999999999999999999854 356899999999999
Q ss_pred HHHHHHHHHhccCCCceEEEEECCccHHHHHHH----hhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhC
Q 010709 209 QIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSE----LRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM 284 (503)
Q Consensus 209 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~ 284 (503)
|+.+.++.++ +...++.++....+.... ..+..+++++||+++........+...++++|||||||++.++
T Consensus 80 dqv~~l~~~g-----i~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~ 154 (607)
T PRK11057 80 DQVDQLLANG-----VAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQW 154 (607)
T ss_pred HHHHHHHHcC-----CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccc
Confidence 9998888753 566666666655443222 2245789999999986432222344567899999999999987
Q ss_pred C--CHHHHHHH--HHhCCCCCcEEEEEeeCCHHHHHHHHHhc--CCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHH
Q 010709 285 G--FEPQIREV--MQNLPDKHQTLLFSATMPVEIEALAQEYL--TDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLA 358 (503)
Q Consensus 285 ~--~~~~~~~i--l~~~~~~~q~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 358 (503)
+ |.+.+..+ +....+..+++++|||+++.....+...+ .+|... ..... ..++.. ..+....+...+..
T Consensus 155 G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~-~~~~~--r~nl~~--~v~~~~~~~~~l~~ 229 (607)
T PRK11057 155 GHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISSFD--RPNIRY--TLVEKFKPLDQLMR 229 (607)
T ss_pred cCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEE-ECCCC--CCccee--eeeeccchHHHHHH
Confidence 6 67666544 22233568899999999988766544443 344433 22211 222221 12222233344444
Q ss_pred HHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCC
Q 010709 359 LLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGL 438 (503)
Q Consensus 359 ~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gl 438 (503)
.+.. ....++||||+++++|+.+++.|...|+.+..+||+|++++|.++++.|++|+.+|||||+++++||
T Consensus 230 ~l~~---------~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GI 300 (607)
T PRK11057 230 YVQE---------QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGI 300 (607)
T ss_pred HHHh---------cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccC
Confidence 4332 2345799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 439 DVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 439 dip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
|+|+|++||+||+|++.++|+||+|||||.
T Consensus 301 Dip~V~~VI~~d~P~s~~~y~Qr~GRaGR~ 330 (607)
T PRK11057 301 NKPNVRFVVHFDIPRNIESYYQETGRAGRD 330 (607)
T ss_pred CCCCcCEEEEeCCCCCHHHHHHHhhhccCC
Confidence 999999999999999999999999999993
No 41
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=4.5e-45 Score=381.47 Aligned_cols=300 Identities=22% Similarity=0.333 Sum_probs=238.9
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHH
Q 010709 138 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (503)
Q Consensus 138 ~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 217 (503)
.+||..++++|.++++.+++|+|+++++|||+|||++|++|++.. ++.++|++|+++|+.|+.+.++.+
T Consensus 8 ~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~-----------~g~~lVisPl~sL~~dq~~~l~~~ 76 (591)
T TIGR01389 8 TFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL-----------KGLTVVISPLISLMKDQVDQLRAA 76 (591)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc-----------CCcEEEEcCCHHHHHHHHHHHHHc
Confidence 479999999999999999999999999999999999999998853 356899999999999999988875
Q ss_pred hccCCCceEEEEECCccHHHHHHH----hhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCC--CHHHHH
Q 010709 218 SRSLDSFKTAIVVGGTNIAEQRSE----LRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG--FEPQIR 291 (503)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~--~~~~~~ 291 (503)
+ +.+..+.++....+.... ..+..+|+++||+++........+...++++|||||||++.++| |.+.+.
T Consensus 77 g-----i~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~ 151 (591)
T TIGR01389 77 G-----VAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQ 151 (591)
T ss_pred C-----CcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHH
Confidence 3 667777777665543322 23568999999999965433334456789999999999998875 777766
Q ss_pred HHH---HhCCCCCcEEEEEeeCCHHHHHHHHHhcC--CCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHh
Q 010709 292 EVM---QNLPDKHQTLLFSATMPVEIEALAQEYLT--DPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFL 366 (503)
Q Consensus 292 ~il---~~~~~~~q~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~ 366 (503)
++. ..++ ..+++++|||+++.+...+...+. ++..+ .. .....++... ......+...+...+...
T Consensus 152 ~l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~-~~--~~~r~nl~~~--v~~~~~~~~~l~~~l~~~--- 222 (591)
T TIGR01389 152 RLGSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEF-IT--SFDRPNLRFS--VVKKNNKQKFLLDYLKKH--- 222 (591)
T ss_pred HHHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeE-ec--CCCCCCcEEE--EEeCCCHHHHHHHHHHhc---
Confidence 553 3343 445999999999988877766664 33322 21 1122233222 222334445555555432
Q ss_pred hhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEE
Q 010709 367 AEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHV 446 (503)
Q Consensus 367 ~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~V 446 (503)
...++||||++++.|+.+++.|...|+.+..+||+|++++|..+++.|.+|+.+|||||+++++|||+|+|++|
T Consensus 223 ------~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~V 296 (591)
T TIGR01389 223 ------RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFV 296 (591)
T ss_pred ------CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEE
Confidence 24569999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCChhHHHHhhCcceee
Q 010709 447 VNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 447 I~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
|+|++|++++.|+||+||+||.
T Consensus 297 I~~~~p~s~~~y~Q~~GRaGR~ 318 (591)
T TIGR01389 297 IHYDMPGNLESYYQEAGRAGRD 318 (591)
T ss_pred EEcCCCCCHHHHhhhhccccCC
Confidence 9999999999999999999993
No 42
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.5e-45 Score=393.33 Aligned_cols=324 Identities=21% Similarity=0.296 Sum_probs=247.0
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEE
Q 010709 122 SFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPV-ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (503)
Q Consensus 122 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil 200 (503)
.|+++++++.+.+.+...|+..|+|+|.++++. +.+|+|+++++|||+|||++|.+|++..+.. ++++||+
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~--------~~kal~i 73 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR--------GGKALYI 73 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc--------CCcEEEE
Confidence 478899999999999999999999999999998 6789999999999999999999999988742 5779999
Q ss_pred cccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhH
Q 010709 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 280 (503)
Q Consensus 201 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~ 280 (503)
+|+++||.|+++.++++.. . ++++..++|+...... .....+|+|+||+++..++.+....++++++|||||+|.
T Consensus 74 ~P~raLa~q~~~~~~~~~~-~-g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~ 148 (737)
T PRK02362 74 VPLRALASEKFEEFERFEE-L-GVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHL 148 (737)
T ss_pred eChHHHHHHHHHHHHHhhc-C-CCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccc
Confidence 9999999999999998753 2 5788888887654332 224589999999999888877555678999999999999
Q ss_pred HhhCCCHHHHHHHHHhC---CCCCcEEEEEeeCCHHHHHHHHHhcCC--------CeEEEeCCCCCCCCceEEEEEEcCh
Q 010709 281 MLDMGFEPQIREVMQNL---PDKHQTLLFSATMPVEIEALAQEYLTD--------PVQVKVGKVSSPTANVIQILEKVSE 349 (503)
Q Consensus 281 l~~~~~~~~~~~il~~~---~~~~q~i~~SAT~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (503)
+.+.+++..++.++.++ .+..|+|++|||+++. .++. .|+.. |+.+..................+..
T Consensus 149 l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la-~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~ 226 (737)
T PRK02362 149 IDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELA-DWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEV 226 (737)
T ss_pred cCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHH-HHhCCCcccCCCCCCCCeeeEecCCeeccccccccCCC
Confidence 88888888888776554 5688999999999752 3233 33321 1111100000000000000000111
Q ss_pred hhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCC-------------------------------
Q 010709 350 NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEG------------------------------- 398 (503)
Q Consensus 350 ~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~------------------------------- 398 (503)
..+ ......+.... ...+++||||++++.|+.+++.|....
T Consensus 227 ~~~-~~~~~~~~~~~-------~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L 298 (737)
T PRK02362 227 PSK-DDTLNLVLDTL-------EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDL 298 (737)
T ss_pred ccc-hHHHHHHHHHH-------HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHH
Confidence 111 12222222211 134579999999999999988886431
Q ss_pred -----CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEE----cc-----CCCChhHHHHhhCc
Q 010709 399 -----LHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN----LD-----LPKVLLAASESLCT 464 (503)
Q Consensus 399 -----~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~----~~-----~p~s~~~~~Qr~GR 464 (503)
..+..+|++|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.+..+|.||+||
T Consensus 299 ~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GR 378 (737)
T PRK02362 299 ADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGR 378 (737)
T ss_pred HHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhc
Confidence 36889999999999999999999999999999999999999999999997 66 58899999999999
Q ss_pred ceee
Q 010709 465 TSFN 468 (503)
Q Consensus 465 ~gR~ 468 (503)
|||.
T Consensus 379 AGR~ 382 (737)
T PRK02362 379 AGRP 382 (737)
T ss_pred CCCC
Confidence 9994
No 43
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=5.7e-45 Score=374.43 Aligned_cols=361 Identities=21% Similarity=0.256 Sum_probs=279.6
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHH
Q 010709 128 LHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELA 207 (503)
Q Consensus 128 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La 207 (503)
+++.+.+.+... |..||+.|.+||+.+.+|+|++|+||||||||+++++|++..+...+......+-.+|||+|.|+|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 678888888877 9999999999999999999999999999999999999999999887533334567899999999999
Q ss_pred HHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCC--CCCCccEEEecchhHHhhCC
Q 010709 208 QQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT--SLSRVSFVILDEADRMLDMG 285 (503)
Q Consensus 208 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~--~l~~~~~vViDEaH~l~~~~ 285 (503)
+.+.+.+..++... ++.+...+|++...+..+...+.+||+++||+.|.-++....+ .+.++++|||||.|.+.+..
T Consensus 87 ~Di~~rL~~~~~~~-G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sK 165 (814)
T COG1201 87 NDIRRRLEEPLREL-GIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHHHHHHHHHHc-CCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccc
Confidence 99999999999876 6888999999999888888889999999999999777765433 58899999999999998776
Q ss_pred CHHHHHHHHHh---CCCCCcEEEEEeeCCHHHHHHHHHhcCC--CeEEEeCCCCCCCCceEEEEEEcC--h-hhHHHHHH
Q 010709 286 FEPQIREVMQN---LPDKHQTLLFSATMPVEIEALAQEYLTD--PVQVKVGKVSSPTANVIQILEKVS--E-NEKVDRLL 357 (503)
Q Consensus 286 ~~~~~~~il~~---~~~~~q~i~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~-~~k~~~l~ 357 (503)
.+.++.--+.+ +.++.|.|++|||..+ ....++...+. +..+.... ......+........ . ..-...++
T Consensus 166 RG~~Lsl~LeRL~~l~~~~qRIGLSATV~~-~~~varfL~g~~~~~~Iv~~~-~~k~~~i~v~~p~~~~~~~~~~~~~~~ 243 (814)
T COG1201 166 RGVQLALSLERLRELAGDFQRIGLSATVGP-PEEVAKFLVGFGDPCEIVDVS-AAKKLEIKVISPVEDLIYDEELWAALY 243 (814)
T ss_pred cchhhhhhHHHHHhhCcccEEEeehhccCC-HHHHHHHhcCCCCceEEEEcc-cCCcceEEEEecCCccccccchhHHHH
Confidence 55555433332 3338999999999963 33344444433 33432221 111111111111111 0 11112233
Q ss_pred HHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCC-CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccc
Q 010709 358 ALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEG-LHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASR 436 (503)
Q Consensus 358 ~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~-~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 436 (503)
..+.+.... ...+|||+|++..++.++..|++.+ ..+..+||.++.++|..+.+.|++|+.+++|||..++-
T Consensus 244 ~~i~~~v~~-------~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLEL 316 (814)
T COG1201 244 ERIAELVKK-------HRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLEL 316 (814)
T ss_pred HHHHHHHhh-------cCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhh
Confidence 333222211 1249999999999999999999886 89999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEccCCCChhHHHHhhCcceeeeee-----------------------ccCchhhhhhHHHHHHHHHHHH
Q 010709 437 GLDVMGVAHVVNLDLPKVLLAASESLCTTSFNITT-----------------------NLDGDMKKLEFCLILAITVLLF 493 (503)
Q Consensus 437 Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~ 493 (503)
|||+.+++.||+++.|+++..+.||+||+|+.+.. ..++.+..++......|.++|+
T Consensus 317 GIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~i~~~~LDVLaq~ 396 (814)
T COG1201 317 GIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERIKIPKNPLDVLAQQ 396 (814)
T ss_pred ccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCCcccCCCCCcchhHHHHH
Confidence 99999999999999999999999999999985421 1124444555667788888888
Q ss_pred HHHHhh
Q 010709 494 VIFLSI 499 (503)
Q Consensus 494 ~~~~~~ 499 (503)
+.||-+
T Consensus 397 ivg~~~ 402 (814)
T COG1201 397 IVGMAL 402 (814)
T ss_pred HHHHHh
Confidence 888754
No 44
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=2.5e-44 Score=382.92 Aligned_cols=325 Identities=20% Similarity=0.273 Sum_probs=248.8
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEE
Q 010709 122 SFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPV-ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (503)
Q Consensus 122 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil 200 (503)
.|+++++++.+.+.++..|+..|+++|.++++. +++|+|+++++|||+|||++|.+|++..+... ++++||+
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~-------~~~~l~l 74 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE-------GGKAVYL 74 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc-------CCeEEEE
Confidence 477889999999999999999999999999986 78999999999999999999999999887643 5789999
Q ss_pred cccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhH
Q 010709 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 280 (503)
Q Consensus 201 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~ 280 (503)
+|+++|+.|+++.++.+.. . ++++..++|+...... ....++|+|+||+++..++.+....++++++||+||+|.
T Consensus 75 ~P~~aLa~q~~~~~~~~~~-~-g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~ 149 (720)
T PRK00254 75 VPLKALAEEKYREFKDWEK-L-GLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHL 149 (720)
T ss_pred eChHHHHHHHHHHHHHHhh-c-CCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCc
Confidence 9999999999999988643 3 5788888888765432 225689999999999888876666788999999999999
Q ss_pred HhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCC-ce-EEEEEEcChh--hHH-HH
Q 010709 281 MLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTA-NV-IQILEKVSEN--EKV-DR 355 (503)
Q Consensus 281 l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~--~k~-~~ 355 (503)
+.+.+++..+..++.++....|+|++|||+++ ..++.. |+...... ......+.. .+ .+........ .+. ..
T Consensus 150 l~~~~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~-wl~~~~~~-~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~ 226 (720)
T PRK00254 150 IGSYDRGATLEMILTHMLGRAQILGLSATVGN-AEELAE-WLNAELVV-SDWRPVKLRKGVFYQGFLFWEDGKIERFPNS 226 (720)
T ss_pred cCCccchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHH-HhCCcccc-CCCCCCcceeeEecCCeeeccCcchhcchHH
Confidence 98888999999999999889999999999975 344443 55432211 111110100 00 0111111111 110 11
Q ss_pred HHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHC---------------------------------CCeEE
Q 010709 356 LLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE---------------------------------GLHAV 402 (503)
Q Consensus 356 l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~---------------------------------~~~v~ 402 (503)
....+.+... ..+++||||++++.|+.++..|... ...+.
T Consensus 227 ~~~~~~~~i~-------~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~ 299 (720)
T PRK00254 227 WESLVYDAVK-------KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVA 299 (720)
T ss_pred HHHHHHHHHH-------hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEE
Confidence 1112211111 2346999999999998877666321 23589
Q ss_pred EEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEE-------ccCCC-ChhHHHHhhCcceee
Q 010709 403 ALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN-------LDLPK-VLLAASESLCTTSFN 468 (503)
Q Consensus 403 ~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~-------~~~p~-s~~~~~Qr~GR~gR~ 468 (503)
++|++|++++|..+++.|++|.++|||||+++++|+|+|++++||. ++.|. ...+|.||+|||||.
T Consensus 300 ~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~ 373 (720)
T PRK00254 300 FHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRP 373 (720)
T ss_pred EeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCC
Confidence 9999999999999999999999999999999999999999999994 55544 567999999999994
No 45
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=1.5e-43 Score=365.89 Aligned_cols=305 Identities=17% Similarity=0.193 Sum_probs=239.1
Q ss_pred CCCCCCcHHHHHHHHHHhcCC-CeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCC-eEEEEcccHHHHHHHHHHHHH
Q 010709 139 HEYTRPTSIQAQAMPVALSGR-DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGP-LALVLAPTRELAQQIEKEVKA 216 (503)
Q Consensus 139 ~~~~~~~~~Q~~~i~~i~~~~-~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~-~~lil~Ptr~La~q~~~~~~~ 216 (503)
.||. |+|||.++++.++.|+ ++++.+|||+|||.++.++++.. .. ....+ ++++++|||+||.|+++.+.+
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~-----~~~~~~rLv~~vPtReLa~Qi~~~~~~ 84 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EI-----GAKVPRRLVYVVNRRTVVDQVTEEAEK 84 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cc-----cccccceEEEeCchHHHHHHHHHHHHH
Confidence 4787 9999999999999998 58888999999998765444422 11 11234 455577999999999999999
Q ss_pred HhccCC----------------------CceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCC---------
Q 010709 217 LSRSLD----------------------SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT--------- 265 (503)
Q Consensus 217 ~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~--------- 265 (503)
+++.+. .+++..++||.....+...+..+++|+|+|++.+ .+..+
T Consensus 85 ~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i----~sr~L~~gYg~~~~ 160 (844)
T TIGR02621 85 IGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMI----GSRLLFSGYGCGFK 160 (844)
T ss_pred HHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHH----cCCccccccccccc
Confidence 987552 3888999999999999999999999999996444 33332
Q ss_pred -------CCCCccEEEecchhHHhhCCCHHHHHHHHHhC--CC---CCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCC
Q 010709 266 -------SLSRVSFVILDEADRMLDMGFEPQIREVMQNL--PD---KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKV 333 (503)
Q Consensus 266 -------~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~--~~---~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 333 (503)
.+.+++++|+|||| ++++|...+.+|++.+ ++ ++|+++||||++.++......++.++..+.+...
T Consensus 161 ~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~ 238 (844)
T TIGR02621 161 SRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKK 238 (844)
T ss_pred cccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccc
Confidence 26889999999999 5789999999999964 33 2699999999999888888888877766655443
Q ss_pred CCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHH
Q 010709 334 SSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDR 413 (503)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r 413 (503)
......+.+. ..++...|...++..+..... ...+++||||++++.|+.+++.|.+.++ ..+||+|++.+|
T Consensus 239 ~l~a~ki~q~-v~v~~e~Kl~~lv~~L~~ll~------e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR 309 (844)
T TIGR02621 239 RLAAKKIVKL-VPPSDEKFLSTMVKELNLLMK------DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAER 309 (844)
T ss_pred cccccceEEE-EecChHHHHHHHHHHHHHHHh------hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHH
Confidence 3333444443 334444455554444332221 1345799999999999999999998877 899999999999
Q ss_pred H-----HHHHHHhc----CC-------CcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 414 E-----SALRDFRN----GS-------TNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 414 ~-----~~~~~f~~----g~-------~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
. ++++.|+. |+ ..|||||+++++||||+. ++||++..| .++|+||+||+||.
T Consensus 310 ~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~ 377 (844)
T TIGR02621 310 DDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRF 377 (844)
T ss_pred hhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCC
Confidence 9 78999987 44 689999999999999996 899987776 68999999999995
No 46
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=3.7e-42 Score=366.03 Aligned_cols=339 Identities=18% Similarity=0.186 Sum_probs=254.7
Q ss_pred CCHHHHHHHH-HCCCCCCcHHHHHHHHHHhcC------CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEE
Q 010709 128 LHPSIMKDIE-FHEYTRPTSIQAQAMPVALSG------RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (503)
Q Consensus 128 l~~~l~~~l~-~~~~~~~~~~Q~~~i~~i~~~------~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil 200 (503)
.+..+.+.+. .++| .||++|.++|+.++++ .|++++|+||+|||.+|++|++..+.. +++++|+
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~--------g~qvlvL 506 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD--------GKQVAVL 506 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh--------CCeEEEE
Confidence 3345555554 4677 5999999999999874 689999999999999999999877644 5789999
Q ss_pred cccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHH---Hhh-CCCcEEEECcHHHHHHHHcCCCCCCCccEEEec
Q 010709 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRS---ELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILD 276 (503)
Q Consensus 201 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViD 276 (503)
+||++||.|+++.+++++... ++++..+.++....+... .+. +.++|+|+||..+ ...+.+.++++||||
T Consensus 507 vPT~~LA~Q~~~~f~~~~~~~-~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVID 580 (926)
T TIGR00580 507 VPTTLLAQQHFETFKERFANF-PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIID 580 (926)
T ss_pred eCcHHHHHHHHHHHHHHhccC-CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEee
Confidence 999999999999999988765 478888888776544332 233 3589999999433 335678999999999
Q ss_pred chhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHH
Q 010709 277 EADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRL 356 (503)
Q Consensus 277 EaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 356 (503)
|+|++ +......+..+++..++++||||+.+....+......++..+...... ...+...+..... ..+
T Consensus 581 Eahrf-----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~--R~~V~t~v~~~~~----~~i 649 (926)
T TIGR00580 581 EEQRF-----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED--RLPVRTFVMEYDP----ELV 649 (926)
T ss_pred ccccc-----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC--ccceEEEEEecCH----HHH
Confidence 99984 334566677777889999999998776655555556666665543222 2234443332221 111
Q ss_pred HHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHC--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccc
Q 010709 357 LALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVA 434 (503)
Q Consensus 357 ~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~--~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 434 (503)
...+.... ...++++|||++++.++.+++.|++. ++++..+||+|++.+|.+++++|++|+.+|||||+++
T Consensus 650 ~~~i~~el-------~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~ii 722 (926)
T TIGR00580 650 REAIRREL-------LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTII 722 (926)
T ss_pred HHHHHHHH-------HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChh
Confidence 22222221 12357999999999999999999985 7899999999999999999999999999999999999
Q ss_pred ccCCCCCCCCEEEEccCCC-ChhHHHHhhCcceee-------eee-cc----Cchhhh---hhHHHHHHHHHHHHHHHHh
Q 010709 435 SRGLDVMGVAHVVNLDLPK-VLLAASESLCTTSFN-------ITT-NL----DGDMKK---LEFCLILAITVLLFVIFLS 498 (503)
Q Consensus 435 ~~Gldip~v~~VI~~~~p~-s~~~~~Qr~GR~gR~-------~~~-~~----~~~~~~---~~~~~~~~~~~~~~~~~~~ 498 (503)
++|||+|++++||+++.|. ...+|.||+||+||. ++. .. +...++ +.....+.+.+.+++..|-
T Consensus 723 e~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~~~~~~~g~gf~ia~~Dl~ 802 (926)
T TIGR00580 723 ETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQEFSELGAGFKIALHDLE 802 (926)
T ss_pred hcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHHHHHHHHhhcchhhHHHHHHHHH
Confidence 9999999999999999976 678999999999993 122 11 233344 4444455568888888876
Q ss_pred h
Q 010709 499 I 499 (503)
Q Consensus 499 ~ 499 (503)
|
T Consensus 803 ~ 803 (926)
T TIGR00580 803 I 803 (926)
T ss_pred h
Confidence 5
No 47
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=1.8e-41 Score=368.40 Aligned_cols=337 Identities=18% Similarity=0.158 Sum_probs=255.3
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHhcC------CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccc
Q 010709 130 PSIMKDIEFHEYTRPTSIQAQAMPVALSG------RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPT 203 (503)
Q Consensus 130 ~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~------~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Pt 203 (503)
.+..+....+.| .||+.|.++|+.++.+ .|++++|+||+|||.+|+.+++..+. .+++++|++||
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~--------~g~qvlvLvPT 658 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE--------NHKQVAVLVPT 658 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH--------cCCeEEEEeCc
Confidence 344455566777 7999999999999976 79999999999999999888776543 26789999999
Q ss_pred HHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhh----CCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchh
Q 010709 204 RELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELR----GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD 279 (503)
Q Consensus 204 r~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH 279 (503)
++||.|+++.+++.+... ++++.++.++....++...+. +.++|+|+||+.+. ..+.+.++++|||||+|
T Consensus 659 ~eLA~Q~~~~f~~~~~~~-~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEah 732 (1147)
T PRK10689 659 TLLAQQHYDNFRDRFANW-PVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEH 732 (1147)
T ss_pred HHHHHHHHHHHHHhhccC-CceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechh
Confidence 999999999999877554 477888888877766554432 46899999997442 34567899999999999
Q ss_pred HHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHH
Q 010709 280 RMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLAL 359 (503)
Q Consensus 280 ~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 359 (503)
++. +. ....++.++++.|+++||||+.+....+....+.++..+...... ...+...+...........+...
T Consensus 733 rfG---~~--~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~--r~~v~~~~~~~~~~~~k~~il~e 805 (1147)
T PRK10689 733 RFG---VR--HKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREYDSLVVREAILRE 805 (1147)
T ss_pred hcc---hh--HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC--CCCceEEEEecCcHHHHHHHHHH
Confidence 962 22 345567788899999999999888777777788888777543322 22333333332221111111111
Q ss_pred HHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHC--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccC
Q 010709 360 LVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRG 437 (503)
Q Consensus 360 l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~--~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 437 (503)
+ ...++++|||++++.++.+++.|.+. +.++..+||+|++.+|.+++..|++|+.+|||||+++++|
T Consensus 806 l-----------~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierG 874 (1147)
T PRK10689 806 I-----------LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETG 874 (1147)
T ss_pred H-----------hcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcc
Confidence 1 12356999999999999999999987 7899999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEccCC-CChhHHHHhhCcceee-------eeecc-----CchhhhhhHHHHHHH---HHHHHHHHHhh
Q 010709 438 LDVMGVAHVVNLDLP-KVLLAASESLCTTSFN-------ITTNL-----DGDMKKLEFCLILAI---TVLLFVIFLSI 499 (503)
Q Consensus 438 ldip~v~~VI~~~~p-~s~~~~~Qr~GR~gR~-------~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~~ 499 (503)
||+|++++||..+.. .+..+|.||+||+||. ++++. +....++.....+.+ .+.++|..|.|
T Consensus 875 IDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~~~~~~~~~~rl~~~~~~~~lg~gf~~a~~dl~~ 952 (1147)
T PRK10689 875 IDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEI 952 (1147)
T ss_pred cccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCCcccCHHHHHHHHHHHHhcCCcchHHHHHHHHHh
Confidence 999999999954432 2456799999999994 33322 133445554444444 88999988865
No 48
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.9e-42 Score=367.03 Aligned_cols=319 Identities=18% Similarity=0.228 Sum_probs=240.3
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 010709 122 SFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (503)
Q Consensus 122 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~ 201 (503)
.|+++++++.+.+.+...++. ++++|.++++.+.+|+++++++|||+|||+++.++++..+.. ++++||++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~--------~~k~v~i~ 72 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA--------GLKSIYIV 72 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh--------CCcEEEEe
Confidence 467889999999999999987 999999999999999999999999999999999998877643 46799999
Q ss_pred ccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHH
Q 010709 202 PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRM 281 (503)
Q Consensus 202 Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l 281 (503)
|+++||.|+++.++++.. . +..+...+|+...... ....++|+|+||+++..++.+....+.++++||+||+|++
T Consensus 73 P~raLa~q~~~~~~~l~~-~-g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l 147 (674)
T PRK01172 73 PLRSLAMEKYEELSRLRS-L-GMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHII 147 (674)
T ss_pred chHHHHHHHHHHHHHHhh-c-CCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhc
Confidence 999999999999988653 2 4777778877654322 2245899999999998888776666889999999999999
Q ss_pred hhCCCHHHHHHHHHh---CCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEE-----EcChhhH-
Q 010709 282 LDMGFEPQIREVMQN---LPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILE-----KVSENEK- 352 (503)
Q Consensus 282 ~~~~~~~~~~~il~~---~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~k- 352 (503)
.+.+++..++.++.. ++++.|+|++|||+++ ..++.+ |+.... +...... ..+...+. ......+
T Consensus 148 ~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~-wl~~~~-~~~~~r~---vpl~~~i~~~~~~~~~~~~~~ 221 (674)
T PRK01172 148 GDEDRGPTLETVLSSARYVNPDARILALSATVSN-ANELAQ-WLNASL-IKSNFRP---VPLKLGILYRKRLILDGYERS 221 (674)
T ss_pred cCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHH-HhCCCc-cCCCCCC---CCeEEEEEecCeeeecccccc
Confidence 887788777777554 4578899999999975 344443 443221 1111111 11111000 0111111
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHC-------------------------CCeEEEEcCC
Q 010709 353 VDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-------------------------GLHAVALHGG 407 (503)
Q Consensus 353 ~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~-------------------------~~~v~~lh~~ 407 (503)
...+...+.+.. ...+++||||++++.|+.+++.|... ...+..+||+
T Consensus 222 ~~~~~~~i~~~~-------~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hag 294 (674)
T PRK01172 222 QVDINSLIKETV-------NDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAG 294 (674)
T ss_pred cccHHHHHHHHH-------hCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCC
Confidence 111222222211 23457999999999999999988653 1247889999
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccC---------CCChhHHHHhhCcceee
Q 010709 408 RNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDL---------PKVLLAASESLCTTSFN 468 (503)
Q Consensus 408 ~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~---------p~s~~~~~Qr~GR~gR~ 468 (503)
+++++|..+++.|++|.++|||||+++++|+|+|+. .||..|. |-+..+|.||+|||||.
T Consensus 295 l~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~-~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~ 363 (674)
T PRK01172 295 LSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPAR-LVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRP 363 (674)
T ss_pred CCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcce-EEEEcCceEeCCCCceeCCHHHHHHHhhcCCCC
Confidence 999999999999999999999999999999999975 5555553 45788999999999995
No 49
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.7e-42 Score=341.56 Aligned_cols=301 Identities=22% Similarity=0.316 Sum_probs=236.9
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHH
Q 010709 138 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (503)
Q Consensus 138 ~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 217 (503)
.+|+..+++-|.++|..+++|+|+++.+|||.||++||++|++.. .+.+|||.|..+|...+.+.++..
T Consensus 12 ~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-----------~G~TLVVSPLiSLM~DQV~~l~~~ 80 (590)
T COG0514 12 VFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-----------EGLTLVVSPLISLMKDQVDQLEAA 80 (590)
T ss_pred HhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-----------CCCEEEECchHHHHHHHHHHHHHc
Confidence 468999999999999999999999999999999999999999875 346899999999998888888776
Q ss_pred hccCCCceEEEEECCccHHHHHHHh----hCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCC--CHHHHH
Q 010709 218 SRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG--FEPQIR 291 (503)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~--~~~~~~ 291 (503)
+ +.+..+.+..+..+..... ....++++.+|++|..-.....+....+.++||||||++.+|| |++.+.
T Consensus 81 G-----i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~ 155 (590)
T COG0514 81 G-----IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYR 155 (590)
T ss_pred C-----ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHH
Confidence 4 6677776665555443322 2458999999999954333323345678999999999999997 999988
Q ss_pred HHHH---hCCCCCcEEEEEeeCCHHHHHHHHHhcCCCe-EEEeCCCCCCCCceEEEEEEcC-hhhHHHHHHHHHHHHHHh
Q 010709 292 EVMQ---NLPDKHQTLLFSATMPVEIEALAQEYLTDPV-QVKVGKVSSPTANVIQILEKVS-ENEKVDRLLALLVEEAFL 366 (503)
Q Consensus 292 ~il~---~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~~~ 366 (503)
++-. .++ +..++++|||.++.+...+...+.--. .+..... ..+++...+.... ...+.. ++.+
T Consensus 156 ~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sf--dRpNi~~~v~~~~~~~~q~~----fi~~---- 224 (590)
T COG0514 156 RLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSF--DRPNLALKVVEKGEPSDQLA----FLAT---- 224 (590)
T ss_pred HHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecC--CCchhhhhhhhcccHHHHHH----HHHh----
Confidence 7744 344 677999999999998887776654221 2222222 2223222222211 122222 2222
Q ss_pred hhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEE
Q 010709 367 AEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHV 446 (503)
Q Consensus 367 ~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~V 446 (503)
......+..||||.|++.++.+++.|...|+.+..||+||+.++|..+.+.|..++.+|+|||.++++|||.|+|++|
T Consensus 225 --~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfV 302 (590)
T COG0514 225 --VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFV 302 (590)
T ss_pred --hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEE
Confidence 111344568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCChhHHHHhhCccee
Q 010709 447 VNLDLPKVLLAASESLCTTSF 467 (503)
Q Consensus 447 I~~~~p~s~~~~~Qr~GR~gR 467 (503)
||||+|.++++|.|.+|||||
T Consensus 303 iH~~lP~s~EsYyQE~GRAGR 323 (590)
T COG0514 303 IHYDLPGSIESYYQETGRAGR 323 (590)
T ss_pred EEecCCCCHHHHHHHHhhccC
Confidence 999999999999999999999
No 50
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2e-41 Score=356.91 Aligned_cols=294 Identities=19% Similarity=0.224 Sum_probs=224.6
Q ss_pred HHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEE
Q 010709 148 QAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTA 227 (503)
Q Consensus 148 Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~ 227 (503)
-.+.+..+.+++++|++|+||||||++|.++++.... .+++++|++|||++|.|+++++.+......+..++
T Consensus 7 ~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~--------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VG 78 (819)
T TIGR01970 7 LPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG--------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVG 78 (819)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc--------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEE
Confidence 3456666778889999999999999999999887642 24689999999999999999986544322234455
Q ss_pred EEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchh-HHhhCCCHHHH-HHHHHhCCCCCcEEE
Q 010709 228 IVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD-RMLDMGFEPQI-REVMQNLPDKHQTLL 305 (503)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH-~l~~~~~~~~~-~~il~~~~~~~q~i~ 305 (503)
....+.. ....+++|+|+|+|+|++++.+ ...+.++++|||||+| ++++.++...+ ..+...++++.|+|+
T Consensus 79 y~vr~~~------~~s~~t~I~v~T~G~Llr~l~~-d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIl 151 (819)
T TIGR01970 79 YRVRGEN------KVSRRTRLEVVTEGILTRMIQD-DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILA 151 (819)
T ss_pred EEEcccc------ccCCCCcEEEECCcHHHHHHhh-CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEE
Confidence 4444432 2345689999999999999876 5679999999999999 57776665443 456666788999999
Q ss_pred EEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHH-HHHHHHHHhhhccCCCCCcEEEEEcch
Q 010709 306 FSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLL-ALLVEEAFLAEKSCHPFPLTIVFVERK 384 (503)
Q Consensus 306 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~-~~l~~~~~~~~~~~~~~~~~lIF~~~~ 384 (503)
||||++... ...|+.++..+...... ..+.+.+.......+..... ..+.... . ...+.+||||+++
T Consensus 152 mSATl~~~~---l~~~l~~~~vI~~~gr~---~pVe~~y~~~~~~~~~~~~v~~~l~~~l-~-----~~~g~iLVFlpg~ 219 (819)
T TIGR01970 152 MSATLDGER---LSSLLPDAPVVESEGRS---FPVEIRYLPLRGDQRLEDAVSRAVEHAL-A-----SETGSILVFLPGQ 219 (819)
T ss_pred EeCCCCHHH---HHHHcCCCcEEEecCcc---eeeeeEEeecchhhhHHHHHHHHHHHHH-H-----hcCCcEEEEECCH
Confidence 999998653 45677766555544332 23455555444443332211 1221111 1 1246799999999
Q ss_pred hhHHHHHHHHHH---CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCC-------
Q 010709 385 TRCDEVSEALVA---EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKV------- 454 (503)
Q Consensus 385 ~~~~~l~~~L~~---~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~s------- 454 (503)
++++.+++.|.+ .++.+.++||++++++|.++++.|++|+.+|||||+++++|||||+|++|||+|+|+.
T Consensus 220 ~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~ 299 (819)
T TIGR01970 220 AEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKT 299 (819)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCccccccccccc
Confidence 999999999987 4789999999999999999999999999999999999999999999999999999863
Q ss_pred -----------hhHHHHhhCcceee
Q 010709 455 -----------LLAASESLCTTSFN 468 (503)
Q Consensus 455 -----------~~~~~Qr~GR~gR~ 468 (503)
.++|.||.|||||.
T Consensus 300 g~~~L~~~~iSkasa~QR~GRAGR~ 324 (819)
T TIGR01970 300 GITRLETVRISQASATQRAGRAGRL 324 (819)
T ss_pred CCceeeEEEECHHHHHhhhhhcCCC
Confidence 35799999999995
No 51
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=3.3e-41 Score=367.78 Aligned_cols=299 Identities=18% Similarity=0.226 Sum_probs=221.6
Q ss_pred EEccCCCchhHHhHHHHHHHHHhcCCC-----CCCCCCeEEEEcccHHHHHHHHHHHHHHhc-----------cCCCceE
Q 010709 163 GCAETGSGKTAAFTIPMIQHCVAQTPV-----GRGDGPLALVLAPTRELAQQIEKEVKALSR-----------SLDSFKT 226 (503)
Q Consensus 163 i~~~TGsGKTl~~~lp~l~~~~~~~~~-----~~~~~~~~lil~Ptr~La~q~~~~~~~~~~-----------~~~~~~~ 226 (503)
|++|||||||++|.+|++..+...... ...++.++|||+|+++|++|+.+.++.... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999998865321 113468899999999999999998875221 1125889
Q ss_pred EEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcC-CCCCCCccEEEecchhHHhhCCCH----HHHHHHHHhCCCCC
Q 010709 227 AIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG-NTSLSRVSFVILDEADRMLDMGFE----PQIREVMQNLPDKH 301 (503)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~~l~~~~~vViDEaH~l~~~~~~----~~~~~il~~~~~~~ 301 (503)
..++|++...+..+.+.+.++|+|+||++|..++.+. ...++++++|||||+|.+.+..++ ..+.++...++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 9999999988877777788999999999998887643 346899999999999999876444 44556656667789
Q ss_pred cEEEEEeeCCHHHHHHHHHhcC--CCeEEEeCCCCCCCCceEEEEEEcChhhH----------------HHHHHHHHHHH
Q 010709 302 QTLLFSATMPVEIEALAQEYLT--DPVQVKVGKVSSPTANVIQILEKVSENEK----------------VDRLLALLVEE 363 (503)
Q Consensus 302 q~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~k----------------~~~l~~~l~~~ 363 (503)
|+|++|||+++ .+++++ |+. .++.+. .........+.. +.......+ ...++..+...
T Consensus 161 QrIgLSATI~n-~eevA~-~L~g~~pv~Iv-~~~~~r~~~l~v-~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~ 236 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVAA-FLGGDRPVTVV-NPPAMRHPQIRI-VVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETG 236 (1490)
T ss_pred eEEEEEeeCCC-HHHHHH-HhcCCCCEEEE-CCCCCcccceEE-EEecCchhhccccccccccccchhhhhhhhHHHHHH
Confidence 99999999976 455554 543 355543 222222222222 122111110 11111111111
Q ss_pred HHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCC---------------------------------CeEEEEcCCCCH
Q 010709 364 AFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEG---------------------------------LHAVALHGGRNQ 410 (503)
Q Consensus 364 ~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~---------------------------------~~v~~lh~~~~~ 410 (503)
..... ....++|||||++..|+.++..|++.. ..+..+||++++
T Consensus 237 il~~i---~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSk 313 (1490)
T PRK09751 237 ILDEV---LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSK 313 (1490)
T ss_pred HHHHH---hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCH
Confidence 11100 123469999999999999999997641 125689999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 411 SDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 411 ~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
++|..+++.|++|++++||||+.+++||||+++++||+++.|.++.+|+||+||+||.
T Consensus 314 eeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 314 EQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999995
No 52
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.1e-40 Score=343.33 Aligned_cols=301 Identities=15% Similarity=0.139 Sum_probs=217.8
Q ss_pred cHHHHHHHHHHhcCCCeEEEccCCCchhHHh---------HHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHH
Q 010709 145 TSIQAQAMPVALSGRDLLGCAETGSGKTAAF---------TIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVK 215 (503)
Q Consensus 145 ~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~---------~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~ 215 (503)
..+|.++++.+++|+++|++|+||+|||++. +.|.+..+.... ....++++++++|||+||.|+...+.
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~--~~~~~~~ilvt~PrreLa~qi~~~i~ 243 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID--PNFIERPIVLSLPRVALVRLHSITLL 243 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc--cccCCcEEEEECcHHHHHHHHHHHHH
Confidence 3569999999999999999999999999862 222222221100 02235689999999999999999987
Q ss_pred HHhcc--CCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHH
Q 010709 216 ALSRS--LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREV 293 (503)
Q Consensus 216 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~i 293 (503)
+.... ..+..+.+.+|+.... .........+|+|+|++.. ...+.++++|||||||++...+ ..+..+
T Consensus 244 ~~vg~~~~~g~~v~v~~Gg~~~~-~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~--DllL~l 313 (675)
T PHA02653 244 KSLGFDEIDGSPISLKYGSIPDE-LINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG--DIIIAV 313 (675)
T ss_pred HHhCccccCCceEEEEECCcchH-HhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccch--hHHHHH
Confidence 76533 2356788899998732 1122223579999997531 2357889999999999876553 445555
Q ss_pred HHhCC-CCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcCh---------hhHHHHHHHHHHHH
Q 010709 294 MQNLP-DKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSE---------NEKVDRLLALLVEE 363 (503)
Q Consensus 294 l~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~k~~~l~~~l~~~ 363 (503)
++... ...|+++||||++.+++.+ ..++.+|..+.+... ....+.+.+..... ......+...+...
T Consensus 314 lk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr--t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~ 390 (675)
T PHA02653 314 ARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG--TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKY 390 (675)
T ss_pred HHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC--cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHh
Confidence 55443 3358999999999888776 678888888877532 23445555443221 01111122222111
Q ss_pred HHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHC--CCeEEEEcCCCCHHHHHHHHHHH-hcCCCcEEEEccccccCCCC
Q 010709 364 AFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDF-RNGSTNILVATDVASRGLDV 440 (503)
Q Consensus 364 ~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~--~~~v~~lh~~~~~~~r~~~~~~f-~~g~~~vLvaT~~~~~Gldi 440 (503)
. ....+.+||||+++.+|+.+++.|.+. ++.+.++||++++. .+.++.| ++|+.+|||||+++++||||
T Consensus 391 ~------~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDI 462 (675)
T PHA02653 391 T------PPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTI 462 (675)
T ss_pred h------cccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccc
Confidence 0 012357999999999999999999987 79999999999975 4666777 68999999999999999999
Q ss_pred CCCCEEEEcc---CCC---------ChhHHHHhhCcceee
Q 010709 441 MGVAHVVNLD---LPK---------VLLAASESLCTTSFN 468 (503)
Q Consensus 441 p~v~~VI~~~---~p~---------s~~~~~Qr~GR~gR~ 468 (503)
|+|++||++| .|. |.++|.||+||+||.
T Consensus 463 p~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~ 502 (675)
T PHA02653 463 RNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV 502 (675)
T ss_pred cCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC
Confidence 9999999999 565 778999999999995
No 53
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-42 Score=298.86 Aligned_cols=301 Identities=31% Similarity=0.478 Sum_probs=263.5
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 010709 122 SFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (503)
Q Consensus 122 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~ 201 (503)
.|.++-|.|++++++...||..|..+|.++||....|-|+++.|..|.|||.+|.+.-++.+--- ...-.+|++|
T Consensus 43 gfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv-----~g~vsvlvmc 117 (387)
T KOG0329|consen 43 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPV-----DGQVSVLVMC 117 (387)
T ss_pred chhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCC-----CCeEEEEEEe
Confidence 48888899999999999999999999999999999999999999999999999988777664221 1235689999
Q ss_pred ccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHH
Q 010709 202 PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRM 281 (503)
Q Consensus 202 Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l 281 (503)
+||+||-|+..+..++.+.++++++.+.+||.........+.+-++|+|+|||+++.+..+..+.+++++..|+|||+.|
T Consensus 118 htrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkm 197 (387)
T KOG0329|consen 118 HTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKM 197 (387)
T ss_pred ccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHH
Confidence 99999999999999999999999999999999988887888888999999999999999999999999999999999998
Q ss_pred hhC-CCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCC-CCCCceEEEEEEcChhhHHHHHHHH
Q 010709 282 LDM-GFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVS-SPTANVIQILEKVSENEKVDRLLAL 359 (503)
Q Consensus 282 ~~~-~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~~ 359 (503)
++. +.+..+.++.+.-|...|++.+|||++++++...++|+.+|..+.++... .....+.|++...+..+|...+.++
T Consensus 198 le~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dL 277 (387)
T KOG0329|consen 198 LEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDL 277 (387)
T ss_pred HHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhh
Confidence 876 67888999999999999999999999999999999999999999887654 4455577888888888888888877
Q ss_pred HHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCC
Q 010709 360 LVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLD 439 (503)
Q Consensus 360 l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gld 439 (503)
+... .++.++||+.+... + . | ..+ +|||++++||+|
T Consensus 278 Ld~L---------eFNQVvIFvKsv~R---------------------l---------~-f---~kr-~vat~lfgrgmd 313 (387)
T KOG0329|consen 278 LDVL---------EFNQVVIFVKSVQR---------------------L---------S-F---QKR-LVATDLFGRGMD 313 (387)
T ss_pred hhhh---------hhcceeEeeehhhh---------------------h---------h-h---hhh-hHHhhhhccccC
Confidence 7543 33469999987654 0 0 3 223 899999999999
Q ss_pred CCCCCEEEEccCCCChhHHHHhhCcceeeeee
Q 010709 440 VMGVAHVVNLDLPKVLLAASESLCTTSFNITT 471 (503)
Q Consensus 440 ip~v~~VI~~~~p~s~~~~~Qr~GR~gR~~~~ 471 (503)
|..++.|+|||+|.+...|.||+|||||.-+.
T Consensus 314 iervNi~~NYdmp~~~DtYlHrv~rAgrfGtk 345 (387)
T KOG0329|consen 314 IERVNIVFNYDMPEDSDTYLHRVARAGRFGTK 345 (387)
T ss_pred cccceeeeccCCCCCchHHHHHhhhhhccccc
Confidence 99999999999999999999999999996433
No 54
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=1e-39 Score=343.44 Aligned_cols=335 Identities=20% Similarity=0.239 Sum_probs=242.0
Q ss_pred HHHHHH-HHCCCCCCcHHHHHHHHHHhcC------CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccc
Q 010709 131 SIMKDI-EFHEYTRPTSIQAQAMPVALSG------RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPT 203 (503)
Q Consensus 131 ~l~~~l-~~~~~~~~~~~Q~~~i~~i~~~------~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Pt 203 (503)
.+.+.+ ...+| .||++|.++++.+..+ .+++++|+||||||++|++|++..+.. +.+++|++||
T Consensus 249 ~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~--------g~q~lilaPT 319 (681)
T PRK10917 249 ELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA--------GYQAALMAPT 319 (681)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc--------CCeEEEEecc
Confidence 444444 44566 6999999999999876 379999999999999999999887543 6789999999
Q ss_pred HHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHH---HHhh-CCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchh
Q 010709 204 RELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR---SELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD 279 (503)
Q Consensus 204 r~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH 279 (503)
++||.|+++.+++++... ++++.+++|+....+.. ..+. +.++|+|+||+.+.+ ...+.++++|||||+|
T Consensus 320 ~~LA~Q~~~~l~~l~~~~-~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~H 393 (681)
T PRK10917 320 EILAEQHYENLKKLLEPL-GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQH 393 (681)
T ss_pred HHHHHHHHHHHHHHHhhc-CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechh
Confidence 999999999999998765 58899999998854433 2333 359999999987743 3457889999999999
Q ss_pred HHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHH
Q 010709 280 RMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLAL 359 (503)
Q Consensus 280 ~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 359 (503)
++.. ..+..+.......++++||||+.+....+.. +.+.....+.........+...+... .+...++..
T Consensus 394 rfg~-----~qr~~l~~~~~~~~iL~~SATp~prtl~~~~--~g~~~~s~i~~~p~~r~~i~~~~~~~---~~~~~~~~~ 463 (681)
T PRK10917 394 RFGV-----EQRLALREKGENPHVLVMTATPIPRTLAMTA--YGDLDVSVIDELPPGRKPITTVVIPD---SRRDEVYER 463 (681)
T ss_pred hhhH-----HHHHHHHhcCCCCCEEEEeCCCCHHHHHHHH--cCCCceEEEecCCCCCCCcEEEEeCc---ccHHHHHHH
Confidence 8632 2333444445568899999998665443332 33222222222222222333333322 223344444
Q ss_pred HHHHHHhhhccCCCCCcEEEEEcchh--------hHHHHHHHHHHC--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEE
Q 010709 360 LVEEAFLAEKSCHPFPLTIVFVERKT--------RCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNILV 429 (503)
Q Consensus 360 l~~~~~~~~~~~~~~~~~lIF~~~~~--------~~~~l~~~L~~~--~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLv 429 (503)
+..... ...+++|||+..+ .++.+++.|... ++++..+||+|++.+|.++++.|++|+.+|||
T Consensus 464 i~~~~~-------~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILV 536 (681)
T PRK10917 464 IREEIA-------KGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILV 536 (681)
T ss_pred HHHHHH-------cCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEE
Confidence 444331 2346999999643 456677777765 57899999999999999999999999999999
Q ss_pred EccccccCCCCCCCCEEEEccCCC-ChhHHHHhhCcceee-------eeec-c--CchhhhhhHHHHHHHHHHHHHHHH
Q 010709 430 ATDVASRGLDVMGVAHVVNLDLPK-VLLAASESLCTTSFN-------ITTN-L--DGDMKKLEFCLILAITVLLFVIFL 497 (503)
Q Consensus 430 aT~~~~~Gldip~v~~VI~~~~p~-s~~~~~Qr~GR~gR~-------~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~ 497 (503)
||+++++|+|+|++++||+++.|+ ....+.||+||+||. ++.. . +...+++..+....|.+.+.-..|
T Consensus 537 aT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~~~~~dgf~iae~dl 615 (681)
T PRK10917 537 ATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIMRETNDGFVIAEKDL 615 (681)
T ss_pred ECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHHHHhcchHHHHHHhH
Confidence 999999999999999999999998 578888999999994 2221 1 145556666555555555555544
No 55
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1.2e-40 Score=352.04 Aligned_cols=294 Identities=19% Similarity=0.240 Sum_probs=223.8
Q ss_pred HHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEE
Q 010709 148 QAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTA 227 (503)
Q Consensus 148 Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~ 227 (503)
-.+.+..+.++++++++|+||||||++|.++++.... .+++++|++|||++|.|+++.+.+......+..++
T Consensus 10 ~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~--------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VG 81 (812)
T PRK11664 10 LPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG--------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVG 81 (812)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC--------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceEE
Confidence 3456666778899999999999999999888886521 13579999999999999999986554332245666
Q ss_pred EEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhH-HhhCCCH-HHHHHHHHhCCCCCcEEE
Q 010709 228 IVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR-MLDMGFE-PQIREVMQNLPDKHQTLL 305 (503)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~-l~~~~~~-~~~~~il~~~~~~~q~i~ 305 (503)
...++... ....++|+|+|||+|.+++.. ...+.++++|||||+|+ .++.++. ..+.+++..++++.|+|+
T Consensus 82 y~vr~~~~------~~~~t~I~v~T~G~Llr~l~~-d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlil 154 (812)
T PRK11664 82 YRMRAESK------VGPNTRLEVVTEGILTRMIQR-DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLI 154 (812)
T ss_pred EEecCccc------cCCCCcEEEEChhHHHHHHhh-CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEE
Confidence 66655432 224578999999999998876 56799999999999996 4444432 234556677888999999
Q ss_pred EEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHH-HHHHHHHHhhhccCCCCCcEEEEEcch
Q 010709 306 FSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLL-ALLVEEAFLAEKSCHPFPLTIVFVERK 384 (503)
Q Consensus 306 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~-~~l~~~~~~~~~~~~~~~~~lIF~~~~ 384 (503)
||||++.. ....|+.++..+...... ..+.+.+.......+..... ..+.... . ...+.+||||+++
T Consensus 155 mSATl~~~---~l~~~~~~~~~I~~~gr~---~pV~~~y~~~~~~~~~~~~v~~~l~~~l-~-----~~~g~iLVFlpg~ 222 (812)
T PRK11664 155 MSATLDND---RLQQLLPDAPVIVSEGRS---FPVERRYQPLPAHQRFDEAVARATAELL-R-----QESGSLLLFLPGV 222 (812)
T ss_pred EecCCCHH---HHHHhcCCCCEEEecCcc---ccceEEeccCchhhhHHHHHHHHHHHHH-H-----hCCCCEEEEcCCH
Confidence 99999865 245677766555544322 23555555555444443221 1222111 1 1246799999999
Q ss_pred hhHHHHHHHHHH---CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCC-------
Q 010709 385 TRCDEVSEALVA---EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKV------- 454 (503)
Q Consensus 385 ~~~~~l~~~L~~---~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~s------- 454 (503)
++++.+++.|.. .++.+..+||++++++|.++++.|++|+.+|||||+++++|||||+|++|||+|+++.
T Consensus 223 ~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~ 302 (812)
T PRK11664 223 GEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKT 302 (812)
T ss_pred HHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccC
Confidence 999999999987 5789999999999999999999999999999999999999999999999999998864
Q ss_pred -----------hhHHHHhhCcceee
Q 010709 455 -----------LLAASESLCTTSFN 468 (503)
Q Consensus 455 -----------~~~~~Qr~GR~gR~ 468 (503)
.++|.||.||+||.
T Consensus 303 g~~~L~~~~iSkasa~QR~GRaGR~ 327 (812)
T PRK11664 303 GLTRLVTQRISQASMTQRAGRAGRL 327 (812)
T ss_pred CcceeEEEeechhhhhhhccccCCC
Confidence 26899999999995
No 56
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.5e-39 Score=307.10 Aligned_cols=349 Identities=23% Similarity=0.213 Sum_probs=251.1
Q ss_pred CCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhc
Q 010709 140 EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (503)
Q Consensus 140 ~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~ 219 (503)
+..+++.+|.......+.+ |++|+.|||.|||+++.+-+..++.+. ++++|+++||+-|+.|.++.+++...
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~-------~~kvlfLAPTKPLV~Qh~~~~~~v~~ 83 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF-------GGKVLFLAPTKPLVLQHAEFCRKVTG 83 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc-------CCeEEEecCCchHHHHHHHHHHHHhC
Confidence 3457888999988887766 999999999999999887777776665 34899999999999999999999884
Q ss_pred cCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhCCC
Q 010709 220 SLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPD 299 (503)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~ 299 (503)
- +.-.+..++|.... +.+...+...+|+|+||+++.+-+..+.+++.++.+||+||||+..+..-...+.+......+
T Consensus 84 i-p~~~i~~ltGev~p-~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k 161 (542)
T COG1111 84 I-PEDEIAALTGEVRP-EEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAK 161 (542)
T ss_pred C-ChhheeeecCCCCh-HHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhcc
Confidence 3 23455566665554 445667788999999999999999999999999999999999998877555555555555566
Q ss_pred CCcEEEEEeeCCHHHH---HHHHHhcCCCeEEEeCCCCCCC---CceEEEEEEcChhh----------------------
Q 010709 300 KHQTLLFSATMPVEIE---ALAQEYLTDPVQVKVGKVSSPT---ANVIQILEKVSENE---------------------- 351 (503)
Q Consensus 300 ~~q~i~~SAT~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---------------------- 351 (503)
++.++++||||..+.+ +.++......+.+......... ..+...+..+....
T Consensus 162 ~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~ 241 (542)
T COG1111 162 NPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKE 241 (542)
T ss_pred CceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7779999999965544 4444444444444333222111 11111221110000
Q ss_pred --------------------------------------------HHHHHHHHH------------HHHHHhhhc------
Q 010709 352 --------------------------------------------KVDRLLALL------------VEEAFLAEK------ 369 (503)
Q Consensus 352 --------------------------------------------k~~~l~~~l------------~~~~~~~~~------ 369 (503)
++.....++ .+.......
T Consensus 242 ~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a 321 (542)
T COG1111 242 LGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAA 321 (542)
T ss_pred cCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHH
Confidence 000000000 000000000
Q ss_pred ----------------------------------------cCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEE-EEc---
Q 010709 370 ----------------------------------------SCHPFPLTIVFVERKTRCDEVSEALVAEGLHAV-ALH--- 405 (503)
Q Consensus 370 ----------------------------------------~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~-~lh--- 405 (503)
..++..++|||++.+..++.+.++|.+.+..+. .+-
T Consensus 322 ~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa 401 (542)
T COG1111 322 KSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQA 401 (542)
T ss_pred HHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeecc
Confidence 011225799999999999999999999988774 333
Q ss_pred -----CCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCcceee-------eeecc
Q 010709 406 -----GGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFN-------ITTNL 473 (503)
Q Consensus 406 -----~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~-------~~~~~ 473 (503)
.||+|++|.+++++|+.|+.+|||||+++++|||||+++.||+|++..|.-.++||.||+||. +++..
T Consensus 402 ~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~r~Grv~vLvt~g 481 (542)
T COG1111 402 SREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRKRKGRVVVLVTEG 481 (542)
T ss_pred ccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccCCCCeEEEEEecC
Confidence 479999999999999999999999999999999999999999999999999999999999995 45555
Q ss_pred CchhhhhhHHHHHHHHHHHHHHHHh
Q 010709 474 DGDMKKLEFCLILAITVLLFVIFLS 498 (503)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (503)
..+-+.....+.-+..|...+.++.
T Consensus 482 trdeayy~~s~rke~~m~e~i~~~~ 506 (542)
T COG1111 482 TRDEAYYYSSRRKEQKMIESIRGLS 506 (542)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4565666666666666666665554
No 57
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=3.1e-39 Score=337.70 Aligned_cols=307 Identities=22% Similarity=0.256 Sum_probs=225.0
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHhcC------CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccH
Q 010709 131 SIMKDIEFHEYTRPTSIQAQAMPVALSG------RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR 204 (503)
Q Consensus 131 ~l~~~l~~~~~~~~~~~Q~~~i~~i~~~------~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr 204 (503)
.+.+.+...+| .||++|.++++.++.+ .+.+++|+||||||++|++|++..+.. +.+++|++||+
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~--------g~qvlilaPT~ 294 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA--------GYQVALMAPTE 294 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc--------CCcEEEECCHH
Confidence 34455667788 7999999999999865 258999999999999999998877543 57899999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEECCccHHHHH---HHhh-CCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhH
Q 010709 205 ELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR---SELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 280 (503)
Q Consensus 205 ~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~ 280 (503)
+||.|+++.+++++... ++++.+++|+....+.. ..+. +.++|+|+||+.+.+ ...+.++++|||||+|+
T Consensus 295 ~LA~Q~~~~~~~l~~~~-gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~ 368 (630)
T TIGR00643 295 ILAEQHYNSLRNLLAPL-GIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHR 368 (630)
T ss_pred HHHHHHHHHHHHHhccc-CcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhh
Confidence 99999999999998765 58999999998765432 2232 458999999987753 45678999999999998
Q ss_pred HhhCCCHHHHHHHHHhCC--CCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHH
Q 010709 281 MLDMGFEPQIREVMQNLP--DKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLA 358 (503)
Q Consensus 281 l~~~~~~~~~~~il~~~~--~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 358 (503)
+... +...+..... ...++++||||+.+....+. .+.+.....+.........+...+... . ....++.
T Consensus 369 fg~~----qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~--~~~~l~~~~i~~~p~~r~~i~~~~~~~--~-~~~~~~~ 439 (630)
T TIGR00643 369 FGVE----QRKKLREKGQGGFTPHVLVMSATPIPRTLALT--VYGDLDTSIIDELPPGRKPITTVLIKH--D-EKDIVYE 439 (630)
T ss_pred ccHH----HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHH--hcCCcceeeeccCCCCCCceEEEEeCc--c-hHHHHHH
Confidence 5322 1222333332 25789999999865433322 222211111111111122233333222 2 2244454
Q ss_pred HHHHHHHhhhccCCCCCcEEEEEcch--------hhHHHHHHHHHHC--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEE
Q 010709 359 LLVEEAFLAEKSCHPFPLTIVFVERK--------TRCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNIL 428 (503)
Q Consensus 359 ~l~~~~~~~~~~~~~~~~~lIF~~~~--------~~~~~l~~~L~~~--~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vL 428 (503)
.+.+... ...+++|||+.. ..++.+++.|.+. ++.+..+||+|++++|..+++.|++|+.+||
T Consensus 440 ~i~~~l~-------~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~IL 512 (630)
T TIGR00643 440 FIEEEIA-------KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDIL 512 (630)
T ss_pred HHHHHHH-------hCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEE
Confidence 4444322 234699999876 3456777777653 7889999999999999999999999999999
Q ss_pred EEccccccCCCCCCCCEEEEccCCC-ChhHHHHhhCcceee
Q 010709 429 VATDVASRGLDVMGVAHVVNLDLPK-VLLAASESLCTTSFN 468 (503)
Q Consensus 429 vaT~~~~~Gldip~v~~VI~~~~p~-s~~~~~Qr~GR~gR~ 468 (503)
|||+++++|||+|++++||+++.|+ ....+.||+||+||.
T Consensus 513 VaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~ 553 (630)
T TIGR00643 513 VATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRG 553 (630)
T ss_pred EECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccC
Confidence 9999999999999999999999997 678899999999993
No 58
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=6e-40 Score=357.23 Aligned_cols=298 Identities=22% Similarity=0.289 Sum_probs=234.3
Q ss_pred CCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q 010709 139 HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (503)
Q Consensus 139 ~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 218 (503)
.|+ .|+++|..+++.++.|+|++++||||+|||+ |.++++.++.. .+++++||+||++|+.|+++.++.++
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~-------~g~~alIL~PTreLa~Qi~~~l~~l~ 147 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK-------KGKKSYIIFPTRLLVEQVVEKLEKFG 147 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeccHHHHHHHHHHHHHHh
Confidence 466 8999999999999999999999999999997 44565555433 26889999999999999999999998
Q ss_pred ccCCCceEEEEECCcc-----HHHHHHHhh-CCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhh---------
Q 010709 219 RSLDSFKTAIVVGGTN-----IAEQRSELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD--------- 283 (503)
Q Consensus 219 ~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~--------- 283 (503)
... ++.+..++++.. ..+....+. +.++|+|+||++|.+++. .+...++++|||||||++++
T Consensus 148 ~~~-~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l 224 (1176)
T PRK09401 148 EKV-GCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLL 224 (1176)
T ss_pred hhc-CceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHH
Confidence 765 466666666653 222233333 468999999999998876 35566799999999999986
Q ss_pred --CCCH-HHHHHHHHhCCC------------------------CCcEEEEEeeCCHH-HHHHHHHhcCCCeEEEeCCCCC
Q 010709 284 --MGFE-PQIREVMQNLPD------------------------KHQTLLFSATMPVE-IEALAQEYLTDPVQVKVGKVSS 335 (503)
Q Consensus 284 --~~~~-~~~~~il~~~~~------------------------~~q~i~~SAT~~~~-~~~~~~~~~~~~~~~~~~~~~~ 335 (503)
.||. ..+..++..++. ..|++++|||+++. +.. .++.++..+.+.....
T Consensus 225 ~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~~ 301 (1176)
T PRK09401 225 YLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPVF 301 (1176)
T ss_pred HhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCccc
Confidence 5774 567777776654 68999999999764 332 2344555566666655
Q ss_pred CCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhh---HHHHHHHHHHCCCeEEEEcCCCCHHH
Q 010709 336 PTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTR---CDEVSEALVAEGLHAVALHGGRNQSD 412 (503)
Q Consensus 336 ~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~---~~~l~~~L~~~~~~v~~lh~~~~~~~ 412 (503)
...++.+.+..+. .+...+..++... ..++||||+++.. ++.+++.|+..|+.+..+||++
T Consensus 302 ~~rnI~~~yi~~~--~k~~~L~~ll~~l----------~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l---- 365 (1176)
T PRK09401 302 YLRNIVDSYIVDE--DSVEKLVELVKRL----------GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF---- 365 (1176)
T ss_pred ccCCceEEEEEcc--cHHHHHHHHHHhc----------CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH----
Confidence 6667777777654 4555555554321 1359999999877 9999999999999999999999
Q ss_pred HHHHHHHHhcCCCcEEEE----ccccccCCCCCC-CCEEEEccCCC------ChhHHHHhhCcceee
Q 010709 413 RESALRDFRNGSTNILVA----TDVASRGLDVMG-VAHVVNLDLPK------VLLAASESLCTTSFN 468 (503)
Q Consensus 413 r~~~~~~f~~g~~~vLva----T~~~~~Gldip~-v~~VI~~~~p~------s~~~~~Qr~GR~gR~ 468 (503)
.+.++.|++|+.+|||| |++++||||+|+ |++|||||+|+ ....+.||+||+-..
T Consensus 366 -~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 366 -ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred -HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 23459999999999999 699999999999 89999999998 668899999997533
No 59
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=1.8e-38 Score=352.54 Aligned_cols=311 Identities=18% Similarity=0.235 Sum_probs=239.8
Q ss_pred HHHHHHHH-CCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHH
Q 010709 131 SIMKDIEF-HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQ 209 (503)
Q Consensus 131 ~l~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q 209 (503)
+..+.++. .|| .|+++|.++++.++.|+|++++||||+|||++++++++... . .++++|||+||++|+.|
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~-~-------~g~~aLVl~PTreLa~Q 137 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA-L-------KGKKCYIILPTTLLVKQ 137 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH-h-------cCCeEEEEECHHHHHHH
Confidence 44455554 799 69999999999999999999999999999997665554332 1 25789999999999999
Q ss_pred HHHHHHHHhccCC-CceEEEEECCccHHHHHH---Hhh-CCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhh-
Q 010709 210 IEKEVKALSRSLD-SFKTAIVVGGTNIAEQRS---ELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD- 283 (503)
Q Consensus 210 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~-~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~- 283 (503)
+.+.++.++.... ++.+..++|+....++.. .+. +.++|+|+||++|.+.+... ...+++++||||||+|++
T Consensus 138 i~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVDEAD~ml~~ 215 (1638)
T PRK14701 138 TVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVDDVDAFLKA 215 (1638)
T ss_pred HHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEECceecccc
Confidence 9999999886542 467778888887665432 333 35899999999998776542 226799999999999976
Q ss_pred ----------CCCHHHHHH----HHH----------------------hCCCCCc-EEEEEeeCCHHHHHHHHHhcCCCe
Q 010709 284 ----------MGFEPQIRE----VMQ----------------------NLPDKHQ-TLLFSATMPVEIEALAQEYLTDPV 326 (503)
Q Consensus 284 ----------~~~~~~~~~----il~----------------------~~~~~~q-~i~~SAT~~~~~~~~~~~~~~~~~ 326 (503)
.||.+.+.. ++. .+++..| ++++|||+++.- ....++.++.
T Consensus 216 ~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~--~~~~l~~~~l 293 (1638)
T PRK14701 216 SKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKG--DRVKLYRELL 293 (1638)
T ss_pred ccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchh--HHHHHhhcCe
Confidence 478877764 332 2344455 577999998531 1223456777
Q ss_pred EEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhh---HHHHHHHHHHCCCeEEE
Q 010709 327 QVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTR---CDEVSEALVAEGLHAVA 403 (503)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~---~~~l~~~L~~~~~~v~~ 403 (503)
.+.++.......++.+.+.......+ ..+..++... ..++||||++++. |+.+++.|...|+++..
T Consensus 294 ~f~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~----------g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~ 362 (1638)
T PRK14701 294 GFEVGSGRSALRNIVDVYLNPEKIIK-EHVRELLKKL----------GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIEL 362 (1638)
T ss_pred EEEecCCCCCCCCcEEEEEECCHHHH-HHHHHHHHhC----------CCCeEEEEeccccchHHHHHHHHHHHCCCeEEE
Confidence 77777766666778888776655544 3455444321 1358999999875 58999999999999999
Q ss_pred EcCCCCHHHHHHHHHHHhcCCCcEEEEc----cccccCCCCCC-CCEEEEccCCC---ChhHHHHhh-------------
Q 010709 404 LHGGRNQSDRESALRDFRNGSTNILVAT----DVASRGLDVMG-VAHVVNLDLPK---VLLAASESL------------- 462 (503)
Q Consensus 404 lh~~~~~~~r~~~~~~f~~g~~~vLvaT----~~~~~Gldip~-v~~VI~~~~p~---s~~~~~Qr~------------- 462 (503)
+||+ |..+++.|++|+.+||||| ++++||||+|+ |++|||||+|+ ++..|.|..
T Consensus 363 ~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~ 437 (1638)
T PRK14701 363 VSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKI 437 (1638)
T ss_pred ecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHh
Confidence 9995 8899999999999999999 58999999999 99999999999 887777765
Q ss_pred Ccceeeee
Q 010709 463 CTTSFNIT 470 (503)
Q Consensus 463 GR~gR~~~ 470 (503)
||+||.-.
T Consensus 438 ~~a~~~g~ 445 (1638)
T PRK14701 438 EEELKEGI 445 (1638)
T ss_pred hhhcccCC
Confidence 77777654
No 60
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=4.1e-38 Score=321.31 Aligned_cols=298 Identities=16% Similarity=0.141 Sum_probs=214.5
Q ss_pred CCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhcc
Q 010709 141 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (503)
Q Consensus 141 ~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~ 220 (503)
...|+++|.++++.++.+++.++++|||+|||+++.. +....... ...++||++||++|+.||.+.+++++..
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~-l~~~~~~~------~~~~vLilvpt~eL~~Q~~~~l~~~~~~ 184 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYL-LSRYYLEN------YEGKVLIIVPTTSLVTQMIDDFVDYRLF 184 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHH-HHHHHHhc------CCCeEEEEECcHHHHHHHHHHHHHhccc
Confidence 3589999999999999999999999999999987643 33332332 1347999999999999999999998743
Q ss_pred CCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhCCCC
Q 010709 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDK 300 (503)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~ 300 (503)
. ...+..+.+|.... .+.+|+|+|++++.+... ..++++++||+||||++.. ..+..++..+++.
T Consensus 185 ~-~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~----~~~~~il~~~~~~ 249 (501)
T PHA02558 185 P-REAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTG----KSLTSIITKLDNC 249 (501)
T ss_pred c-ccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccc----hhHHHHHHhhhcc
Confidence 2 23454566665321 347999999999976442 2467899999999999864 4567777777777
Q ss_pred CcEEEEEeeCCHHHHHH--HHHhcCCCeEEEeCCCC-----C-CCCceEEEEEEc---------------------Chhh
Q 010709 301 HQTLLFSATMPVEIEAL--AQEYLTDPVQVKVGKVS-----S-PTANVIQILEKV---------------------SENE 351 (503)
Q Consensus 301 ~q~i~~SAT~~~~~~~~--~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~---------------------~~~~ 351 (503)
.++++||||+.+..... ...++++ ....+.... . ....+....... ....
T Consensus 250 ~~~lGLTATp~~~~~~~~~~~~~fG~-i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 328 (501)
T PHA02558 250 KFKFGLTGSLRDGKANILQYVGLFGD-IFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTK 328 (501)
T ss_pred ceEEEEeccCCCccccHHHHHHhhCC-ceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHH
Confidence 88999999996532211 1122221 111111000 0 000000000000 0111
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEc
Q 010709 352 KVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT 431 (503)
Q Consensus 352 k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT 431 (503)
+...+........ ..+.++||||.+.++++.+++.|++.+.++..+||++++++|..+++.|++|+..|||||
T Consensus 329 Rn~~I~~~~~~~~-------~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT 401 (501)
T PHA02558 329 RNKWIANLALKLA-------KKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVAS 401 (501)
T ss_pred HHHHHHHHHHHHH-------hcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEE
Confidence 1111111111111 233568999999999999999999999999999999999999999999999999999998
Q ss_pred -cccccCCCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 432 -DVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 432 -~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
+++++|+|+|++++||+++++++...|+||+||++|.
T Consensus 402 ~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~ 439 (501)
T PHA02558 402 YGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRK 439 (501)
T ss_pred cceeccccccccccEEEEecCCcchhhhhhhhhccccC
Confidence 8999999999999999999999999999999999995
No 61
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=2.2e-38 Score=302.69 Aligned_cols=330 Identities=24% Similarity=0.269 Sum_probs=258.6
Q ss_pred cccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 010709 123 FTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPV-ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (503)
Q Consensus 123 ~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~ 201 (503)
.+++.+++...+.|+..|++.+.|+|.-++.+ +++|.|.+|+++|+||||++..++-+..++.. |+++|+++
T Consensus 196 vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~-------g~KmlfLv 268 (830)
T COG1202 196 VDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG-------GKKMLFLV 268 (830)
T ss_pred ccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC-------CCeEEEEe
Confidence 56788999999999999999999999999987 67999999999999999999998888887764 68899999
Q ss_pred ccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHH----HHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecc
Q 010709 202 PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR----SELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDE 277 (503)
Q Consensus 202 Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDE 277 (503)
|..+||+|-++.|++--..+ ++.+.+..|........ ......+||+|+|++-+-.++..+ ..+.+++.|||||
T Consensus 269 PLVALANQKy~dF~~rYs~L-glkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDE 346 (830)
T COG1202 269 PLVALANQKYEDFKERYSKL-GLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDE 346 (830)
T ss_pred hhHHhhcchHHHHHHHhhcc-cceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeee
Confidence 99999999999998655555 57787777765443321 112345899999999997777664 6789999999999
Q ss_pred hhHHhhCCCHH---HHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcC-hhhHH
Q 010709 278 ADRMLDMGFEP---QIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVS-ENEKV 353 (503)
Q Consensus 278 aH~l~~~~~~~---~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~ 353 (503)
+|.+-+...+. .+..-++.+-+..|+|.+|||+.+. +.+++.+--+.+.. +..+ ..+..+...+. ..+|.
T Consensus 347 iHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y--~~RP---VplErHlvf~~~e~eK~ 420 (830)
T COG1202 347 IHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLY--DERP---VPLERHLVFARNESEKW 420 (830)
T ss_pred eeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEee--cCCC---CChhHeeeeecCchHHH
Confidence 99877654444 4444456666789999999999654 44677665554333 2222 22334444444 44555
Q ss_pred HHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc
Q 010709 354 DRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDV 433 (503)
Q Consensus 354 ~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~ 433 (503)
+.+..+.+ ..........-.+++|||.+++..|..++++|..+|+++.++|+|++..+|..+...|.++++.++|+|.+
T Consensus 421 ~ii~~L~k-~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAA 499 (830)
T COG1202 421 DIIARLVK-REFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAA 499 (830)
T ss_pred HHHHHHHH-HHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhh
Confidence 44444444 44444444456688999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCEEEE----ccCC-CChhHHHHhhCcceeee
Q 010709 434 ASRGLDVMGVAHVVN----LDLP-KVLLAASESLCTTSFNI 469 (503)
Q Consensus 434 ~~~Gldip~v~~VI~----~~~p-~s~~~~~Qr~GR~gR~~ 469 (503)
++.|+|+| ++.||+ ++.- -++.+|.|+.|||||-.
T Consensus 500 L~AGVDFP-ASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~ 539 (830)
T COG1202 500 LAAGVDFP-ASQVIFESLAMGIEWLSVREFQQMLGRAGRPD 539 (830)
T ss_pred hhcCCCCc-hHHHHHHHHHcccccCCHHHHHHHhcccCCCC
Confidence 99999999 455664 2332 37899999999999943
No 62
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=1.4e-38 Score=294.16 Aligned_cols=275 Identities=27% Similarity=0.481 Sum_probs=219.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhccCC--CceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCcc
Q 010709 194 GPLALVLAPTRELAQQIEKEVKALSRSLD--SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVS 271 (503)
Q Consensus 194 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~ 271 (503)
.+.++|+-|.|+|+.|....++++-.+.. .++..++.||...+++...+..+++|+|+||+++.+.+..+.+.+..++
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~cr 365 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCR 365 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeE
Confidence 35589999999999999998887765543 3555688899999999999999999999999999999999999999999
Q ss_pred EEEecchhHHhhCCCHHHHHHHHHhCCC------CCcEEEEEeeCCH-HHHHHHHHhcCCCeEEEeCCCCCCCCceEEEE
Q 010709 272 FVILDEADRMLDMGFEPQIREVMQNLPD------KHQTLLFSATMPV-EIEALAQEYLTDPVQVKVGKVSSPTANVIQIL 344 (503)
Q Consensus 272 ~vViDEaH~l~~~~~~~~~~~il~~~~~------~~q~i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (503)
++|+|||+-++..++...+.++...++. ..|.+++|||+.. ++..+.++.+.-|.-+...........+.+.+
T Consensus 366 FlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv 445 (725)
T KOG0349|consen 366 FLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVV 445 (725)
T ss_pred EEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccce
Confidence 9999999999998888888888777653 6789999999842 44555666666777777666665555555444
Q ss_pred EEcChh------------------------------hHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHH
Q 010709 345 EKVSEN------------------------------EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEAL 394 (503)
Q Consensus 345 ~~~~~~------------------------------~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L 394 (503)
..+... +......++++..........+.-.++||||.++..|+.|.+++
T Consensus 446 ~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~ 525 (725)
T KOG0349|consen 446 KLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMM 525 (725)
T ss_pred eecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHH
Confidence 333211 01111122222211111112233467999999999999999999
Q ss_pred HHCC---CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 395 VAEG---LHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 395 ~~~~---~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
+++| +.++++||+..+.+|.+.++.|+.+.++.||||++++||+||.++-++||+.+|.+..+|.|||||+||.
T Consensus 526 ~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 526 NQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred HHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchh
Confidence 9874 6899999999999999999999999999999999999999999999999999999999999999999994
No 63
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=1.4e-37 Score=329.14 Aligned_cols=326 Identities=20% Similarity=0.271 Sum_probs=254.6
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHH
Q 010709 129 HPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQ 208 (503)
Q Consensus 129 ~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~ 208 (503)
...+...+.+.|+..|+.+|.+|+..+.+|+|+||+.+||||||.+|++|++.+++..+ ..++|+|.||++||+
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~------~a~AL~lYPtnALa~ 129 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP------SARALLLYPTNALAN 129 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc------CccEEEEechhhhHh
Confidence 34457888889999999999999999999999999999999999999999999998864 347899999999999
Q ss_pred HHHHHHHHHhccCC-CceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCC----CCCCCccEEEecchhHHhh
Q 010709 209 QIEKEVKALSRSLD-SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN----TSLSRVSFVILDEADRMLD 283 (503)
Q Consensus 209 q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~----~~l~~~~~vViDEaH~l~~ 283 (503)
.+.++++++..... ++....+.|++...+......+.++|+++||++|..++.+.. +.+.++++||+||+|..-+
T Consensus 130 DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrG 209 (851)
T COG1205 130 DQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRG 209 (851)
T ss_pred hHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccc
Confidence 99999999998775 577777888887777667788999999999999988666542 3567899999999996433
Q ss_pred CCCHHHHH----HHHH---hCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcC--------
Q 010709 284 MGFEPQIR----EVMQ---NLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVS-------- 348 (503)
Q Consensus 284 ~~~~~~~~----~il~---~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 348 (503)
- |+..+. +++. ..+.+.|+|++|||+... ..++..+++......+.....+............
T Consensus 210 v-~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~ 287 (851)
T COG1205 210 V-QGSEVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESI 287 (851)
T ss_pred c-chhHHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhc
Confidence 2 444443 3333 334588999999999644 4477777776655544444444333333322220
Q ss_pred hhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHH----HHHHHCC----CeEEEEcCCCCHHHHHHHHHHH
Q 010709 349 ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVS----EALVAEG----LHAVALHGGRNQSDRESALRDF 420 (503)
Q Consensus 349 ~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~----~~L~~~~----~~v~~lh~~~~~~~r~~~~~~f 420 (503)
...+...+-.+....... .-++|+|+.++..++.+. ..+...+ ..+..+++++...+|.++...|
T Consensus 288 r~s~~~~~~~~~~~~~~~-------~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~ 360 (851)
T COG1205 288 RRSALAELATLAALLVRN-------GIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEF 360 (851)
T ss_pred ccchHHHHHHHHHHHHHc-------CceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHH
Confidence 112222222222222211 235999999999999987 4444555 5788999999999999999999
Q ss_pred hcCCCcEEEEccccccCCCCCCCCEEEEccCCC-ChhHHHHhhCcceeee
Q 010709 421 RNGSTNILVATDVASRGLDVMGVAHVVNLDLPK-VLLAASESLCTTSFNI 469 (503)
Q Consensus 421 ~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~-s~~~~~Qr~GR~gR~~ 469 (503)
++|+..++++|++++-|+||.+++.||.++.|. ++.++.||.||+||..
T Consensus 361 ~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~ 410 (851)
T COG1205 361 KEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRG 410 (851)
T ss_pred hcCCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCC
Confidence 999999999999999999999999999999999 9999999999999965
No 64
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=1.1e-37 Score=308.15 Aligned_cols=287 Identities=19% Similarity=0.153 Sum_probs=198.1
Q ss_pred CeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHH---
Q 010709 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA--- 236 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 236 (503)
++++++|||+|||++|++|++..+... .+.+++|++|+++|+.|+++.++.++.. .++..+++....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~------~~~~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~~~~ 70 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ------KADRVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFKRIK 70 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC------CCCeEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHHHHh
Confidence 589999999999999999999775432 3578999999999999999999997532 334444433210
Q ss_pred ---------HHHHHh-h-----CCCcEEEECcHHHHHHHHcCC----CCC--CCccEEEecchhHHhhCCCHHHHHHHHH
Q 010709 237 ---------EQRSEL-R-----GGVSIVVATPGRFLDHLQQGN----TSL--SRVSFVILDEADRMLDMGFEPQIREVMQ 295 (503)
Q Consensus 237 ---------~~~~~~-~-----~~~~Ilv~Tp~~l~~~l~~~~----~~l--~~~~~vViDEaH~l~~~~~~~~~~~il~ 295 (503)
...... . ...+|+|+||+++...+.... ..+ -..++|||||+|.+.+.++.. +..++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~ 149 (358)
T TIGR01587 71 EMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLE 149 (358)
T ss_pred ccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHH
Confidence 000001 0 136799999999988776521 111 123799999999987654333 555554
Q ss_pred hCC-CCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEc--ChhhHHHHHHHHHHHHHHhhhccCC
Q 010709 296 NLP-DKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKV--SENEKVDRLLALLVEEAFLAEKSCH 372 (503)
Q Consensus 296 ~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~k~~~l~~~l~~~~~~~~~~~~ 372 (503)
.+. .+.|+++||||+|+.+..+...+...+........... ....+.+... ....+...+..++... .
T Consensus 150 ~l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~~--------~ 220 (358)
T TIGR01587 150 VLKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEER-RFERHRFIKIESDKVGEISSLERLLEFI--------K 220 (358)
T ss_pred HHHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCcccc-ccccccceeeccccccCHHHHHHHHHHh--------h
Confidence 443 46899999999998777766655433211111100000 0011111111 1122333333333211 2
Q ss_pred CCCcEEEEEcchhhHHHHHHHHHHCCC--eEEEEcCCCCHHHHHH----HHHHHhcCCCcEEEEccccccCCCCCCCCEE
Q 010709 373 PFPLTIVFVERKTRCDEVSEALVAEGL--HAVALHGGRNQSDRES----ALRDFRNGSTNILVATDVASRGLDVMGVAHV 446 (503)
Q Consensus 373 ~~~~~lIF~~~~~~~~~l~~~L~~~~~--~v~~lh~~~~~~~r~~----~~~~f~~g~~~vLvaT~~~~~Gldip~v~~V 446 (503)
.++++||||++++.|+.+++.|++.+. .+..+||++++.+|.+ +++.|++|+.+|||||+++++|+|++ +++|
T Consensus 221 ~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~v 299 (358)
T TIGR01587 221 KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVM 299 (358)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEE
Confidence 345799999999999999999988765 5999999999999976 48899999999999999999999996 8999
Q ss_pred EEccCCCChhHHHHhhCcceeee
Q 010709 447 VNLDLPKVLLAASESLCTTSFNI 469 (503)
Q Consensus 447 I~~~~p~s~~~~~Qr~GR~gR~~ 469 (503)
|++..| ..+|+||+||+||.-
T Consensus 300 i~~~~~--~~~~iqr~GR~gR~g 320 (358)
T TIGR01587 300 ITELAP--IDSLIQRLGRLHRYG 320 (358)
T ss_pred EEcCCC--HHHHHHHhccccCCC
Confidence 998877 789999999999953
No 65
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=9.3e-37 Score=332.85 Aligned_cols=290 Identities=23% Similarity=0.359 Sum_probs=219.7
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHH
Q 010709 134 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 213 (503)
Q Consensus 134 ~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~ 213 (503)
+.+.......|+++|..+++.++.|+|++++||||+|||+ |.+|+..++... +++++|++||++||.|+++.
T Consensus 69 ~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~-------g~~vLIL~PTreLa~Qi~~~ 140 (1171)
T TIGR01054 69 EFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKK-------GKRCYIILPTTLLVIQVAEK 140 (1171)
T ss_pred HHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhc-------CCeEEEEeCHHHHHHHHHHH
Confidence 3334444458999999999999999999999999999997 557776665432 68899999999999999999
Q ss_pred HHHHhccCCCce---EEEEECCccHHHHH---HHhh-CCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhh---
Q 010709 214 VKALSRSLDSFK---TAIVVGGTNIAEQR---SELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD--- 283 (503)
Q Consensus 214 ~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~--- 283 (503)
++.++...+ +. +..++|+....++. ..+. ++++|+|+||++|.+.+.+ +.. +++++|+||||+|++
T Consensus 141 l~~l~~~~~-i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~--l~~-~~~~iVvDEaD~~L~~~k 216 (1171)
T TIGR01054 141 ISSLAEKAG-VGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE--LGP-KFDFIFVDDVDALLKASK 216 (1171)
T ss_pred HHHHHHhcC-CceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH--hcC-CCCEEEEeChHhhhhccc
Confidence 999986542 33 33567887765432 2333 4599999999999987765 222 899999999999987
Q ss_pred --------CCCHHH-HHHHH----------------------HhCCCCCc--EEEEEee-CCHHHHHHHHHhcCCCeEEE
Q 010709 284 --------MGFEPQ-IREVM----------------------QNLPDKHQ--TLLFSAT-MPVEIEALAQEYLTDPVQVK 329 (503)
Q Consensus 284 --------~~~~~~-~~~il----------------------~~~~~~~q--~i~~SAT-~~~~~~~~~~~~~~~~~~~~ 329 (503)
+||... +..++ ..+++..| ++++||| .|..+.. .++.++..+.
T Consensus 217 ~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~ 293 (1171)
T TIGR01054 217 NVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFE 293 (1171)
T ss_pred cHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccceE
Confidence 577653 44432 23444445 5678999 5554432 3455666666
Q ss_pred eCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcch---hhHHHHHHHHHHCCCeEEEEcC
Q 010709 330 VGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERK---TRCDEVSEALVAEGLHAVALHG 406 (503)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~---~~~~~l~~~L~~~~~~v~~lh~ 406 (503)
++.......++.+.+..... +...+..++... ..++||||+++ +.|+.+++.|.+.|+++..+||
T Consensus 294 v~~~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l----------~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg 361 (1171)
T TIGR01054 294 VGGGSDTLRNVVDVYVEDED--LKETLLEIVKKL----------GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHA 361 (1171)
T ss_pred ecCccccccceEEEEEeccc--HHHHHHHHHHHc----------CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeC
Confidence 66665566677777665443 233344444321 13589999999 9999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEE----ccccccCCCCCC-CCEEEEccCCCC
Q 010709 407 GRNQSDRESALRDFRNGSTNILVA----TDVASRGLDVMG-VAHVVNLDLPKV 454 (503)
Q Consensus 407 ~~~~~~r~~~~~~f~~g~~~vLva----T~~~~~Gldip~-v~~VI~~~~p~s 454 (503)
++++ .+++.|++|+++|||| |++++||||+|+ |++|||||+|+.
T Consensus 362 ~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 362 TKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred CCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCE
Confidence 9973 6899999999999999 599999999999 899999999974
No 66
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=2.7e-36 Score=294.77 Aligned_cols=297 Identities=19% Similarity=0.153 Sum_probs=204.3
Q ss_pred HHHHHHHHHhcCCC--eEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccC---
Q 010709 147 IQAQAMPVALSGRD--LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL--- 221 (503)
Q Consensus 147 ~Q~~~i~~i~~~~~--vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~--- 221 (503)
+|.++++.+.++++ +++++|||+|||.+|++|++.. +.++++++|+++|++|+++.++.+...+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~-----------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~ 69 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG-----------ENDTIALYPTNALIEDQTEAIKEFVDVFKPE 69 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc-----------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCC
Confidence 49999999998875 8899999999999999988842 3458999999999999999999887533
Q ss_pred CCceEEEEECCccHH--HH-----------------HH-HhhCCCcEEEECcHHHHHHHHcCC--------CCCCCccEE
Q 010709 222 DSFKTAIVVGGTNIA--EQ-----------------RS-ELRGGVSIVVATPGRFLDHLQQGN--------TSLSRVSFV 273 (503)
Q Consensus 222 ~~~~~~~~~~~~~~~--~~-----------------~~-~~~~~~~Ilv~Tp~~l~~~l~~~~--------~~l~~~~~v 273 (503)
.+..+..+.|.+... .. +. .....+.|+++||+.|..++.... ..+..+++|
T Consensus 70 ~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~i 149 (357)
T TIGR03158 70 RDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTV 149 (357)
T ss_pred CCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEE
Confidence 235555555542211 00 00 112467899999999976554311 125789999
Q ss_pred EecchhHHhhCC-----CHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHh--cCCCeEEEeCCC-----------CC
Q 010709 274 ILDEADRMLDMG-----FEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEY--LTDPVQVKVGKV-----------SS 335 (503)
Q Consensus 274 ViDEaH~l~~~~-----~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~-----------~~ 335 (503)
|+||+|.+.... +......++.......+++++|||+++.+...+... ++.+..+..+.. ..
T Consensus 150 V~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~ 229 (357)
T TIGR03158 150 IFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADN 229 (357)
T ss_pred EEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccc
Confidence 999999865432 122334444444445789999999999888777765 555543322220 00
Q ss_pred -------CCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCC--CeEEEEcC
Q 010709 336 -------PTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEG--LHAVALHG 406 (503)
Q Consensus 336 -------~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~--~~v~~lh~ 406 (503)
....+.+.+.. ....+...+..++.. ..... ...+.+++||||++++.++.+++.|++.+ +.+..+||
T Consensus 230 ~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~-i~~~~-~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g 306 (357)
T TIGR03158 230 KTQSFRPVLPPVELELIP-APDFKEEELSELAEE-VIERF-RQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITG 306 (357)
T ss_pred cccccceeccceEEEEEe-CCchhHHHHHHHHHH-HHHHH-hccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeec
Confidence 00133333333 222333322222221 11111 01245679999999999999999999864 57889999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCcce
Q 010709 407 GRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTS 466 (503)
Q Consensus 407 ~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~g 466 (503)
.+++.+|.+. ++..|||||+++++|||+|.+ +|| ++ |.+.+.|+||+||+|
T Consensus 307 ~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 307 FAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 9999988754 478999999999999999976 666 45 899999999999997
No 67
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=3.3e-36 Score=302.44 Aligned_cols=351 Identities=23% Similarity=0.241 Sum_probs=241.0
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHH
Q 010709 128 LHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELA 207 (503)
Q Consensus 128 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La 207 (503)
+++.....+..-....++.+|.+....++ |+|+||++|||+|||+++...++.++.+.+ ..++|+++|++-|+
T Consensus 47 ~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p------~~KiVF~aP~~pLv 119 (746)
T KOG0354|consen 47 LDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP------KGKVVFLAPTRPLV 119 (746)
T ss_pred CChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC------cceEEEeeCCchHH
Confidence 34444444444566689999999999999 999999999999999999888888877764 47899999999999
Q ss_pred HHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCC-CCCccEEEecchhHHhhCCC
Q 010709 208 QQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTS-LSRVSFVILDEADRMLDMGF 286 (503)
Q Consensus 208 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~-l~~~~~vViDEaH~l~~~~~ 286 (503)
.|+...+..++.+ ..+....||.........+....+|+|+||+.+.+.+...... +..+.++||||||+..+..-
T Consensus 120 ~QQ~a~~~~~~~~---~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~ 196 (746)
T KOG0354|consen 120 NQQIACFSIYLIP---YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHP 196 (746)
T ss_pred HHHHHHHhhccCc---ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEccccccccccc
Confidence 9998888777643 5566666665554445567778999999999999988876543 58899999999999877654
Q ss_pred HHHHH-HHHHhCCCCCcEEEEEeeCCHHHHHHHH----------------------------------------------
Q 010709 287 EPQIR-EVMQNLPDKHQTLLFSATMPVEIEALAQ---------------------------------------------- 319 (503)
Q Consensus 287 ~~~~~-~il~~~~~~~q~i~~SAT~~~~~~~~~~---------------------------------------------- 319 (503)
...+. ..+.......|+|++|||+.........
T Consensus 197 Y~~Vmr~~l~~k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~ 276 (746)
T KOG0354|consen 197 YNNIMREYLDLKNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFG 276 (746)
T ss_pred HHHHHHHHHHhhhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHH
Confidence 44444 5555444455999999999544332110
Q ss_pred ----Hhc-----------CCCeEEEe----CCCCCCCCce--EEE--------------------EE-------------
Q 010709 320 ----EYL-----------TDPVQVKV----GKVSSPTANV--IQI--------------------LE------------- 345 (503)
Q Consensus 320 ----~~~-----------~~~~~~~~----~~~~~~~~~~--~~~--------------------~~------------- 345 (503)
.++ .+...... ........+. .+. +.
T Consensus 277 ~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~ 356 (746)
T KOG0354|consen 277 MIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYE 356 (746)
T ss_pred HHHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhcc
Confidence 000 00000000 0000000000 000 00
Q ss_pred -------------------------------Ec--ChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHH
Q 010709 346 -------------------------------KV--SENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSE 392 (503)
Q Consensus 346 -------------------------------~~--~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~ 392 (503)
.. ....|+..+.+.+.+... ..+..++|||+.+++.|..|.+
T Consensus 357 e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~-----~~~dsR~IIFve~R~sa~~l~~ 431 (746)
T KOG0354|consen 357 EVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFE-----QNPDSRTIIFVETRESALALKK 431 (746)
T ss_pred ccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhh-----cCCCccEEEEEehHHHHHHHHH
Confidence 00 012233334444433332 2455679999999999999999
Q ss_pred HHHHC---CCeEEEEc--------CCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHh
Q 010709 393 ALVAE---GLHAVALH--------GGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASES 461 (503)
Q Consensus 393 ~L~~~---~~~v~~lh--------~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr 461 (503)
.|.+. +++...+- .+|++.+|.+++++|++|+.+|||||+++++||||+.|+.||.||...++..++||
T Consensus 432 ~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQr 511 (746)
T KOG0354|consen 432 WLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQR 511 (746)
T ss_pred HHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHH
Confidence 99832 33433333 38999999999999999999999999999999999999999999999999999999
Q ss_pred hCcceee------eeeccCchhhhhhHHHHHHHHHHHHH
Q 010709 462 LCTTSFN------ITTNLDGDMKKLEFCLILAITVLLFV 494 (503)
Q Consensus 462 ~GR~gR~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (503)
.|| ||. +++-..+..+....-...+..+-+.+
T Consensus 512 rGR-gRa~ns~~vll~t~~~~~~~E~~~~~~e~lm~~~i 549 (746)
T KOG0354|consen 512 RGR-GRARNSKCVLLTTGSEVIEFERNNLAKEKLMNQTI 549 (746)
T ss_pred hcc-ccccCCeEEEEEcchhHHHHHHHHHhHHHHHHHHH
Confidence 999 994 22323344444444344444443333
No 68
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=8.6e-36 Score=302.13 Aligned_cols=303 Identities=22% Similarity=0.203 Sum_probs=229.8
Q ss_pred CCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccC
Q 010709 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (503)
Q Consensus 142 ~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~ 221 (503)
..|+++|..+++.++.|+ |..+.||+|||++|.+|++..... |+.++|++||++||.|.++.+..+...+
T Consensus 102 ~~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~--------G~~v~VvTptreLA~qdae~~~~l~~~l 171 (656)
T PRK12898 102 QRHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA--------GLPVHVITVNDYLAERDAELMRPLYEAL 171 (656)
T ss_pred CCCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc--------CCeEEEEcCcHHHHHHHHHHHHHHHhhc
Confidence 379999999999999998 999999999999999999987543 6789999999999999999999998876
Q ss_pred CCceEEEEECCccHHHHHHHhhCCCcEEEECcHHH-HHHHHcC-------------------------CCCCCCccEEEe
Q 010709 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQG-------------------------NTSLSRVSFVIL 275 (503)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~-------------------------~~~l~~~~~vVi 275 (503)
++.+.+++|+.... .+....+++|+|+|..-| .+.+..+ ......+.++||
T Consensus 172 -Glsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIv 248 (656)
T PRK12898 172 -GLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIV 248 (656)
T ss_pred -CCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEe
Confidence 69999999997643 344556799999999887 3333321 112356789999
Q ss_pred cchhHHh-h----------C-------CCHHHH--------------------------------HHHHHh---------
Q 010709 276 DEADRML-D----------M-------GFEPQI--------------------------------REVMQN--------- 296 (503)
Q Consensus 276 DEaH~l~-~----------~-------~~~~~~--------------------------------~~il~~--------- 296 (503)
||+|.++ + . .+.... ++++..
T Consensus 249 DEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~ 328 (656)
T PRK12898 249 DEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAV 328 (656)
T ss_pred ecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccch
Confidence 9999522 1 0 000000 000000
Q ss_pred ---------------CCC-------------------------------------------------------------C
Q 010709 297 ---------------LPD-------------------------------------------------------------K 300 (503)
Q Consensus 297 ---------------~~~-------------------------------------------------------------~ 300 (503)
+.. -
T Consensus 329 ~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y 408 (656)
T PRK12898 329 RREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRY 408 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhh
Confidence 000 0
Q ss_pred CcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEE
Q 010709 301 HQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVF 380 (503)
Q Consensus 301 ~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF 380 (503)
.++.+||||.+....++...|..+++.+...... .....+.+..+....|...+.+.+..... ...++|||
T Consensus 409 ~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~--~r~~~~~~v~~t~~~K~~aL~~~i~~~~~-------~~~pvLIf 479 (656)
T PRK12898 409 LRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS--QRRHLPDEVFLTAAAKWAAVAARVRELHA-------QGRPVLVG 479 (656)
T ss_pred HHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc--cceecCCEEEeCHHHHHHHHHHHHHHHHh-------cCCCEEEE
Confidence 1577999999988888888887777665443322 22233445566777888888887765321 22469999
Q ss_pred EcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCC---CCC-----EEEEccCC
Q 010709 381 VERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVM---GVA-----HVVNLDLP 452 (503)
Q Consensus 381 ~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip---~v~-----~VI~~~~p 452 (503)
|++++.++.+++.|.+.|+.+..+||++.+. +..+..|..+...|+|||++++||+||+ +|. +||++++|
T Consensus 480 t~t~~~se~L~~~L~~~gi~~~~Lhg~~~~r--E~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P 557 (656)
T PRK12898 480 TRSVAASERLSALLREAGLPHQVLNAKQDAE--EAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERH 557 (656)
T ss_pred eCcHHHHHHHHHHHHHCCCCEEEeeCCcHHH--HHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCC
Confidence 9999999999999999999999999986644 4555556666668999999999999999 676 99999999
Q ss_pred CChhHHHHhhCcceee
Q 010709 453 KVLLAASESLCTTSFN 468 (503)
Q Consensus 453 ~s~~~~~Qr~GR~gR~ 468 (503)
.+...|.||+||+||.
T Consensus 558 ~s~r~y~hr~GRTGRq 573 (656)
T PRK12898 558 DSARIDRQLAGRCGRQ 573 (656)
T ss_pred CCHHHHHHhcccccCC
Confidence 9999999999999994
No 69
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=2e-36 Score=317.69 Aligned_cols=310 Identities=19% Similarity=0.235 Sum_probs=240.7
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHH
Q 010709 133 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEK 212 (503)
Q Consensus 133 ~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~ 212 (503)
......+|...+++-|.++|...+.|+|++|.+|||.||++||++|++.. ++..|||.|...|.+.+..
T Consensus 254 ~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~-----------~gitvVISPL~SLm~DQv~ 322 (941)
T KOG0351|consen 254 LLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL-----------GGVTVVISPLISLMQDQVT 322 (941)
T ss_pred HHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc-----------CCceEEeccHHHHHHHHHH
Confidence 33446689999999999999999999999999999999999999999865 5678999999999776555
Q ss_pred HHHHHhccCCCceEEEEECCccHHHHH---HHhhC---CCcEEEECcHHHHHHHH--cCCCCCCC---ccEEEecchhHH
Q 010709 213 EVKALSRSLDSFKTAIVVGGTNIAEQR---SELRG---GVSIVVATPGRFLDHLQ--QGNTSLSR---VSFVILDEADRM 281 (503)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~Ilv~Tp~~l~~~l~--~~~~~l~~---~~~vViDEaH~l 281 (503)
.+... ++....+.++....++. ..+.. ..+|++.||+++...-. .....+.. +.++||||||+.
T Consensus 323 ~L~~~-----~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCV 397 (941)
T KOG0351|consen 323 HLSKK-----GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCV 397 (941)
T ss_pred hhhhc-----CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHh
Confidence 44322 47788888887765332 33332 58999999999843221 11223333 889999999999
Q ss_pred hhCC--CHHHHHHHHHh--CCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHH
Q 010709 282 LDMG--FEPQIREVMQN--LPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLL 357 (503)
Q Consensus 282 ~~~~--~~~~~~~il~~--~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 357 (503)
.+|+ |++.+.++... ..+...+|++|||.+..++..+-..++-.... +........++...+..-........+.
T Consensus 398 SqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~-~~~~sfnR~NL~yeV~~k~~~~~~~~~~ 476 (941)
T KOG0351|consen 398 SQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPE-LFKSSFNRPNLKYEVSPKTDKDALLDIL 476 (941)
T ss_pred hhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcc-eecccCCCCCceEEEEeccCccchHHHH
Confidence 9996 99988876432 23347799999999999888777666532222 2233344445544444433222222222
Q ss_pred HHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccC
Q 010709 358 ALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRG 437 (503)
Q Consensus 358 ~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 437 (503)
..... .++....||||.++.+|+.++..|+..|+.+..||+||+..+|..|.+.|..++++|+|||=++++|
T Consensus 477 ~~~~~--------~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMG 548 (941)
T KOG0351|consen 477 EESKL--------RHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMG 548 (941)
T ss_pred HHhhh--------cCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCC
Confidence 22222 2566779999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEccCCCChhHHHHhhCccee
Q 010709 438 LDVMGVAHVVNLDLPKVLLAASESLCTTSF 467 (503)
Q Consensus 438 ldip~v~~VI~~~~p~s~~~~~Qr~GR~gR 467 (503)
||.|+|+.||+|.+|++++.|.|-+|||||
T Consensus 549 IdK~DVR~ViH~~lPks~E~YYQE~GRAGR 578 (941)
T KOG0351|consen 549 IDKPDVRFVIHYSLPKSFEGYYQEAGRAGR 578 (941)
T ss_pred CCCCceeEEEECCCchhHHHHHHhccccCc
Confidence 999999999999999999999999999999
No 70
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1e-35 Score=319.43 Aligned_cols=287 Identities=20% Similarity=0.286 Sum_probs=199.5
Q ss_pred HHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccH----HHHHHHHHHHHH-HhccCC
Q 010709 148 QAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR----ELAQQIEKEVKA-LSRSLD 222 (503)
Q Consensus 148 Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr----~La~q~~~~~~~-~~~~~~ 222 (503)
..+.+..+..++.++|+|+||||||+ ++|.+...... +..+.+++..|+| +||.++++++.. ++..
T Consensus 79 r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~-----g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~-- 149 (1294)
T PRK11131 79 KQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGR-----GVKGLIGHTQPRRLAARTVANRIAEELETELGGC-- 149 (1294)
T ss_pred HHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCC-----CCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcce--
Confidence 44555566667779999999999999 58876654432 1224566677976 555555555543 2211
Q ss_pred CceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchh-HHhhCCCHHH-HHHHHHhCCCC
Q 010709 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD-RMLDMGFEPQ-IREVMQNLPDK 300 (503)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH-~l~~~~~~~~-~~~il~~~~~~ 300 (503)
+.+.+.+.. ....+++|+|||||+|++++... ..+.++++||||||| ++++.+|... +.+++.. +++
T Consensus 150 -VGY~vrf~~--------~~s~~t~I~v~TpG~LL~~l~~d-~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-rpd 218 (1294)
T PRK11131 150 -VGYKVRFND--------QVSDNTMVKLMTDGILLAEIQQD-RLLMQYDTIIIDEAHERSLNIDFILGYLKELLPR-RPD 218 (1294)
T ss_pred -eceeecCcc--------ccCCCCCEEEEChHHHHHHHhcC-CccccCcEEEecCccccccccchHHHHHHHhhhc-CCC
Confidence 111111111 12356899999999999999864 458999999999999 5888887754 3344333 357
Q ss_pred CcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChh------hHHHHHHHHHHHHHHhhhccCCCC
Q 010709 301 HQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSEN------EKVDRLLALLVEEAFLAEKSCHPF 374 (503)
Q Consensus 301 ~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~k~~~l~~~l~~~~~~~~~~~~~~ 374 (503)
.|+|+||||++. +.+.+.|...| .+.+.... ..+...+...... ..+..++..+.... ..+.
T Consensus 219 lKvILmSATid~--e~fs~~F~~ap-vI~V~Gr~---~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~------~~~~ 286 (1294)
T PRK11131 219 LKVIITSATIDP--ERFSRHFNNAP-IIEVSGRT---YPVEVRYRPIVEEADDTERDQLQAIFDAVDELG------REGP 286 (1294)
T ss_pred ceEEEeeCCCCH--HHHHHHcCCCC-EEEEcCcc---ccceEEEeecccccchhhHHHHHHHHHHHHHHh------cCCC
Confidence 899999999964 45555555455 34454332 2344444443221 12222222222111 1345
Q ss_pred CcEEEEEcchhhHHHHHHHHHHCCCe---EEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccC
Q 010709 375 PLTIVFVERKTRCDEVSEALVAEGLH---AVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDL 451 (503)
Q Consensus 375 ~~~lIF~~~~~~~~~l~~~L~~~~~~---v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~ 451 (503)
+.+||||+++++++.+++.|.+.++. +.++||++++.+|..+++. .|..+|||||+++++|||||+|++||++|+
T Consensus 287 GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl 364 (1294)
T PRK11131 287 GDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGT 364 (1294)
T ss_pred CCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCC
Confidence 77999999999999999999987654 7899999999999999986 578999999999999999999999999974
Q ss_pred ---------------C---CChhHHHHhhCcceee
Q 010709 452 ---------------P---KVLLAASESLCTTSFN 468 (503)
Q Consensus 452 ---------------p---~s~~~~~Qr~GR~gR~ 468 (503)
| -|.++|.||+||+||.
T Consensus 365 ~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~ 399 (1294)
T PRK11131 365 ARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV 399 (1294)
T ss_pred ccccccccccCcccCCeeecCHhhHhhhccccCCC
Confidence 3 3558999999999995
No 71
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=6.7e-35 Score=315.34 Aligned_cols=313 Identities=24% Similarity=0.296 Sum_probs=227.6
Q ss_pred CCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhc
Q 010709 140 EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (503)
Q Consensus 140 ~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~ 219 (503)
+...|+++|.+++..++.+ ++++++|||+|||+++++++...+.. .++++||++|+++|+.|+.+.++++..
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~-------~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 83 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK-------KGGKVLILAPTKPLVEQHAEFFRKFLN 83 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh-------CCCeEEEEeCcHHHHHHHHHHHHHHhC
Confidence 3457899999999988877 99999999999999998877766532 257899999999999999999998864
Q ss_pred cCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhCCC
Q 010709 220 SLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPD 299 (503)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~ 299 (503)
.. ...+..+.|+....+ ...+..+.+|+|+||+.+...+..+.+.+.++++|||||||++.+......+...+....+
T Consensus 84 ~~-~~~v~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~ 161 (773)
T PRK13766 84 IP-EEKIVVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAK 161 (773)
T ss_pred CC-CceEEEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCC
Confidence 32 346777777766543 4455667899999999998888777788899999999999998766444444444444455
Q ss_pred CCcEEEEEeeCCHH---HHHHHHHhcCCCeEEEeCCCCC-----CCCceEEEEEEcCh----------------------
Q 010709 300 KHQTLLFSATMPVE---IEALAQEYLTDPVQVKVGKVSS-----PTANVIQILEKVSE---------------------- 349 (503)
Q Consensus 300 ~~q~i~~SAT~~~~---~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~---------------------- 349 (503)
..++++||||+... +.............+....... ....+.......+.
T Consensus 162 ~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~ 241 (773)
T PRK13766 162 NPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKE 241 (773)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67799999998533 2333333322221111100000 00000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 010709 350 -------------------------------------------------------------------------------- 349 (503)
Q Consensus 350 -------------------------------------------------------------------------------- 349 (503)
T Consensus 242 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~ 321 (773)
T PRK13766 242 LGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSK 321 (773)
T ss_pred CCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcH
Confidence
Q ss_pred ------------------------hhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEc
Q 010709 350 ------------------------NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALH 405 (503)
Q Consensus 350 ------------------------~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh 405 (503)
..|...+..++.+. ....+..++||||+++..|+.+++.|...++.+..+|
T Consensus 322 ~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~-----~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~ 396 (773)
T PRK13766 322 ASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQ-----LGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFV 396 (773)
T ss_pred HHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHH-----HhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEE
Confidence 00000000000000 0013567899999999999999999999999999998
Q ss_pred CC--------CCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCccee
Q 010709 406 GG--------RNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSF 467 (503)
Q Consensus 406 ~~--------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR 467 (503)
|. +++.+|.++++.|++|+.+|||||+++++|+|+|++++||+||+|++...|+||+||+||
T Consensus 397 g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR 466 (773)
T PRK13766 397 GQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGR 466 (773)
T ss_pred ccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCc
Confidence 86 999999999999999999999999999999999999999999999999999999999999
No 72
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.1e-36 Score=281.26 Aligned_cols=313 Identities=17% Similarity=0.247 Sum_probs=227.4
Q ss_pred HHHHH-CCCCC-CcHHHHHHHHHHhcC-CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHH
Q 010709 134 KDIEF-HEYTR-PTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI 210 (503)
Q Consensus 134 ~~l~~-~~~~~-~~~~Q~~~i~~i~~~-~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~ 210 (503)
+.|++ +|+.. -++.|.+|+..+..+ +||.|++|||+||++||++|.|.+ +...||+.|..+|...+
T Consensus 9 eaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-----------~gITIV~SPLiALIkDQ 77 (641)
T KOG0352|consen 9 EALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-----------GGITIVISPLIALIKDQ 77 (641)
T ss_pred HHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-----------CCeEEEehHHHHHHHHH
Confidence 44433 45544 377899999998865 589999999999999999999976 45789999999998888
Q ss_pred HHHHHHHhccCCCceEEEEECCccHHHHHHH------hhCCCcEEEECcHHHH----HHHHcCCCCCCCccEEEecchhH
Q 010709 211 EKEVKALSRSLDSFKTAIVVGGTNIAEQRSE------LRGGVSIVVATPGRFL----DHLQQGNTSLSRVSFVILDEADR 280 (503)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~Ilv~Tp~~l~----~~l~~~~~~l~~~~~vViDEaH~ 280 (503)
.+.+..+- +.+..+....+..+..+. .+....+++.||+... +-+.+....-..+.++|+||||+
T Consensus 78 iDHL~~LK-----Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHC 152 (641)
T KOG0352|consen 78 IDHLKRLK-----VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHC 152 (641)
T ss_pred HHHHHhcC-----CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhh
Confidence 88777763 444444444333332222 2356789999998752 22223333456689999999999
Q ss_pred HhhCC--CHHHHHHH--HHhCCCCCcEEEEEeeCCHHHHHHHH--HhcCCCeEEEeCCCCCCCCceEEEEEEcChhh---
Q 010709 281 MLDMG--FEPQIREV--MQNLPDKHQTLLFSATMPVEIEALAQ--EYLTDPVQVKVGKVSSPTANVIQILEKVSENE--- 351 (503)
Q Consensus 281 l~~~~--~~~~~~~i--l~~~~~~~q~i~~SAT~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 351 (503)
..+|| |++.+.++ ++..-+....++++||..+.+++.+- -.+.+|+.+.-.... ..++ +..+...+
T Consensus 153 VSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~F--R~NL---FYD~~~K~~I~ 227 (641)
T KOG0352|consen 153 VSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTF--RDNL---FYDNHMKSFIT 227 (641)
T ss_pred HhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcch--hhhh---hHHHHHHHHhh
Confidence 99996 88888766 33334567799999999998887543 345677665322111 1111 11111111
Q ss_pred -HHHHHHHHHHH----HHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCc
Q 010709 352 -KVDRLLALLVE----EAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTN 426 (503)
Q Consensus 352 -k~~~l~~~l~~----~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~ 426 (503)
-...|.++... ............+-.||||.++++|++++-.|...|+++..+|.|+...+|.++.+.|.+++..
T Consensus 228 D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~P 307 (641)
T KOG0352|consen 228 DCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIP 307 (641)
T ss_pred hHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCC
Confidence 11122222111 1111111222335589999999999999999999999999999999999999999999999999
Q ss_pred EEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCccee
Q 010709 427 ILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSF 467 (503)
Q Consensus 427 vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR 467 (503)
|++||..+++|+|-|+|++||++++|++++-|.|..|||||
T Consensus 308 vI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGR 348 (641)
T KOG0352|consen 308 VIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGR 348 (641)
T ss_pred EEEEEeccccccCCcceeEEEecCchhhhHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999
No 73
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=4e-36 Score=313.67 Aligned_cols=323 Identities=19% Similarity=0.237 Sum_probs=240.1
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHh-cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHH
Q 010709 127 CLHPSIMKDIEFHEYTRPTSIQAQAMPVAL-SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE 205 (503)
Q Consensus 127 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~-~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~ 205 (503)
.+++.+.+-+...++..+.+.|+.++...+ .++|++||+|||+|||+.+++.++..+... +.+++||+|+++
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-------~~k~vYivPlkA 87 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-------GGKVVYIVPLKA 87 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-------CCcEEEEeChHH
Confidence 366777788888888888888988888765 558999999999999999999999887764 577999999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCC
Q 010709 206 LAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG 285 (503)
Q Consensus 206 La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~ 285 (503)
||.+.+++++++-. + ++++...+|+...... .-.+++|+|+||+++...+.+......++++|||||+|.+.+..
T Consensus 88 La~Ek~~~~~~~~~-~-GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~ 162 (766)
T COG1204 88 LAEEKYEEFSRLEE-L-GIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRT 162 (766)
T ss_pred HHHHHHHHhhhHHh-c-CCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcc
Confidence 99999999994433 2 6999999999875542 23569999999999988888776678899999999999777666
Q ss_pred CHHHHHHHHHhCC---CCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCC-CCceEEEEEEcChhh------HHHH
Q 010709 286 FEPQIREVMQNLP---DKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSP-TANVIQILEKVSENE------KVDR 355 (503)
Q Consensus 286 ~~~~~~~il~~~~---~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------k~~~ 355 (503)
.++.++.++.+.+ ...|++++|||+|+. .+++...-.++..-.+...... .....+.+....... +...
T Consensus 163 RG~~lE~iv~r~~~~~~~~rivgLSATlpN~-~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~ 241 (766)
T COG1204 163 RGPVLESIVARMRRLNELIRIVGLSATLPNA-EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNL 241 (766)
T ss_pred cCceehhHHHHHHhhCcceEEEEEeeecCCH-HHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHH
Confidence 7777777766543 447999999999754 4455544444332122221111 111122222222111 2222
Q ss_pred HHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHC-------------------------------------C
Q 010709 356 LLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-------------------------------------G 398 (503)
Q Consensus 356 l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~-------------------------------------~ 398 (503)
.+..+.... ...+++||||++++.+...++.++.. .
T Consensus 242 ~~~~v~~~~-------~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~ 314 (766)
T COG1204 242 ALELVLESL-------AEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVL 314 (766)
T ss_pred HHHHHHHHH-------hcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHH
Confidence 333333222 24567999999999999999998730 0
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEE-----cc-----CCCChhHHHHhhCcceee
Q 010709 399 LHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN-----LD-----LPKVLLAASESLCTTSFN 468 (503)
Q Consensus 399 ~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~-----~~-----~p~s~~~~~Qr~GR~gR~ 468 (503)
..+..+|+|++.++|..+.+.|++|.++||+||..++.|+|+|. +.||. |+ .+-+..+++|++|||||-
T Consensus 315 ~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA-~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRP 393 (766)
T COG1204 315 RGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPA-RTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRP 393 (766)
T ss_pred hCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcc-eEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCC
Confidence 24778999999999999999999999999999999999999995 55553 55 344678999999999995
Q ss_pred ee
Q 010709 469 IT 470 (503)
Q Consensus 469 ~~ 470 (503)
.+
T Consensus 394 g~ 395 (766)
T COG1204 394 GY 395 (766)
T ss_pred Cc
Confidence 43
No 74
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.1e-34 Score=312.68 Aligned_cols=290 Identities=19% Similarity=0.240 Sum_probs=206.3
Q ss_pred HHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEE
Q 010709 150 QAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIV 229 (503)
Q Consensus 150 ~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~ 229 (503)
+.+..+.+++.+||+|+||||||+ ++|.+...... +..++++++.|+|..|..+++.+.+... ..++..
T Consensus 74 ~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~~-----~~~~~I~~tQPRRlAA~svA~RvA~elg----~~lG~~ 142 (1283)
T TIGR01967 74 DIAEAIAENQVVIIAGETGSGKTT--QLPKICLELGR-----GSHGLIGHTQPRRLAARTVAQRIAEELG----TPLGEK 142 (1283)
T ss_pred HHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcCC-----CCCceEecCCccHHHHHHHHHHHHHHhC----CCcceE
Confidence 455555566779999999999999 57877654332 1234677788999999888888776552 333333
Q ss_pred ECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchh-HHhhCCCHHH-HHHHHHhCCCCCcEEEEE
Q 010709 230 VGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD-RMLDMGFEPQ-IREVMQNLPDKHQTLLFS 307 (503)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH-~l~~~~~~~~-~~~il~~~~~~~q~i~~S 307 (503)
+|.....+ .....+++|+|+|+|+|++++... ..+.++++||||||| ++++.+|... +.+++.. +++.|+|+||
T Consensus 143 VGY~vR~~--~~~s~~T~I~~~TdGiLLr~l~~d-~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~-rpdLKlIlmS 218 (1283)
T TIGR01967 143 VGYKVRFH--DQVSSNTLVKLMTDGILLAETQQD-RFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR-RPDLKIIITS 218 (1283)
T ss_pred EeeEEcCC--cccCCCceeeeccccHHHHHhhhC-cccccCcEEEEcCcchhhccchhHHHHHHHHHhh-CCCCeEEEEe
Confidence 34321111 112456899999999999998764 458999999999999 5888887765 4555444 4688999999
Q ss_pred eeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcCh------hhHHHHHHHHHHHHHHhhhccCCCCCcEEEEE
Q 010709 308 ATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSE------NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFV 381 (503)
Q Consensus 308 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~ 381 (503)
||++. ..+.+.|...|+ +.+..... .+...+..... ..+...+...+..... ...+.+|||+
T Consensus 219 ATld~--~~fa~~F~~apv-I~V~Gr~~---PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~------~~~GdILVFL 286 (1283)
T TIGR01967 219 ATIDP--ERFSRHFNNAPI-IEVSGRTY---PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFA------EGPGDILIFL 286 (1283)
T ss_pred CCcCH--HHHHHHhcCCCE-EEECCCcc---cceeEEecccccccchhhhHHHHHHHHHHHHHh------hCCCCEEEeC
Confidence 99964 455555544453 44443322 23333333221 1233333333332211 1346799999
Q ss_pred cchhhHHHHHHHHHHCC---CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCC-----
Q 010709 382 ERKTRCDEVSEALVAEG---LHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPK----- 453 (503)
Q Consensus 382 ~~~~~~~~l~~~L~~~~---~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~----- 453 (503)
+++.+++.+++.|.+.+ +.+.++||++++++|.++++.+ +..+|||||+++++|||||+|++||++|+++
T Consensus 287 pg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd 364 (1283)
T TIGR01967 287 PGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYS 364 (1283)
T ss_pred CCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccc
Confidence 99999999999998764 4689999999999999997754 3479999999999999999999999999654
Q ss_pred -------------ChhHHHHhhCcceee
Q 010709 454 -------------VLLAASESLCTTSFN 468 (503)
Q Consensus 454 -------------s~~~~~Qr~GR~gR~ 468 (503)
|.++|.||.||+||.
T Consensus 365 ~~~~~~~L~~~~ISkasa~QRaGRAGR~ 392 (1283)
T TIGR01967 365 YRTKVQRLPIEPISQASANQRKGRCGRV 392 (1283)
T ss_pred cccCccccCCccCCHHHHHHHhhhhCCC
Confidence 458999999999995
No 75
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=4.6e-34 Score=295.74 Aligned_cols=306 Identities=17% Similarity=0.177 Sum_probs=226.1
Q ss_pred CCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q 010709 139 HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (503)
Q Consensus 139 ~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 218 (503)
.|. .|+++|..+.+.+++|+ |+.+.||+|||+++.+|++...+. |+.++|++||++||.|.++.+..+.
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~--------G~~v~VvTpt~~LA~qd~e~~~~l~ 143 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE--------GKGVHLITVNDYLAKRDAEEMGQVY 143 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc--------CCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 354 89999999999888876 999999999999999999866554 6789999999999999999999999
Q ss_pred ccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHH-HHHHHcC------CCCCCCccEEEecchhHHh-hCC-----
Q 010709 219 RSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQG------NTSLSRVSFVILDEADRML-DMG----- 285 (503)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~------~~~l~~~~~vViDEaH~l~-~~~----- 285 (503)
..+ ++.++++.|+.....+.+ ...+++|+++||+.| .+++..+ ...++.+.++||||||.++ +..
T Consensus 144 ~~l-Gl~v~~i~g~~~~~~~r~-~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpli 221 (790)
T PRK09200 144 EFL-GLTVGLNFSDIDDASEKK-AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLI 221 (790)
T ss_pred hhc-CCeEEEEeCCCCcHHHHH-HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCcee
Confidence 887 699999999988433333 335699999999999 4544432 1356789999999999732 100
Q ss_pred ----------CHHHHHHHHHhCCC--------------------------------------------------------
Q 010709 286 ----------FEPQIREVMQNLPD-------------------------------------------------------- 299 (503)
Q Consensus 286 ----------~~~~~~~il~~~~~-------------------------------------------------------- 299 (503)
.......+...+..
T Consensus 222 isg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~ 301 (790)
T PRK09200 222 ISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKR 301 (790)
T ss_pred eeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhc
Confidence 00011111111100
Q ss_pred C-------------------------------------------------------------CcEEEEEeeCCHHHHHHH
Q 010709 300 K-------------------------------------------------------------HQTLLFSATMPVEIEALA 318 (503)
Q Consensus 300 ~-------------------------------------------------------------~q~i~~SAT~~~~~~~~~ 318 (503)
+ .++.+||+|....-.++.
T Consensus 302 d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~ 381 (790)
T PRK09200 302 DVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFF 381 (790)
T ss_pred CCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHH
Confidence 0 146677888755444444
Q ss_pred HHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCC
Q 010709 319 QEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEG 398 (503)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~ 398 (503)
+.| +-.+.......+.... -..-........|...+...+..... ...++||||++++.++.+++.|.+.|
T Consensus 382 ~~Y-~l~v~~IPt~kp~~r~-d~~~~i~~~~~~K~~al~~~i~~~~~-------~~~pvLIf~~t~~~se~l~~~L~~~g 452 (790)
T PRK09200 382 EVY-NMEVVQIPTNRPIIRI-DYPDKVFVTLDEKYKAVIEEVKERHE-------TGRPVLIGTGSIEQSETFSKLLDEAG 452 (790)
T ss_pred HHh-CCcEEECCCCCCcccc-cCCCeEEcCHHHHHHHHHHHHHHHHh-------cCCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 433 3333221111111111 11123344667788888887765321 34579999999999999999999999
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCC---CCCC-----EEEEccCCCChhHHHHhhCcceee
Q 010709 399 LHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDV---MGVA-----HVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 399 ~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi---p~v~-----~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
+.+..+||.+.+.++..+...++.| .|+|||++++||+|| |+|. +||++++|.+...|.||+||+||.
T Consensus 453 i~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~ 528 (790)
T PRK09200 453 IPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQ 528 (790)
T ss_pred CCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCC
Confidence 9999999999999988888777766 799999999999999 6998 999999999999999999999994
No 76
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-33 Score=279.45 Aligned_cols=299 Identities=20% Similarity=0.227 Sum_probs=216.1
Q ss_pred HHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHH-HHhccCCCceEEE
Q 010709 150 QAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVK-ALSRSLDSFKTAI 228 (503)
Q Consensus 150 ~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~-~~~~~~~~~~~~~ 228 (503)
+.+++|.++..+||||+||||||+ ++|.+.+...+.......++.+-|..|+|..|..+++++. +++.....+.+++
T Consensus 263 ~IMEaIn~n~vvIIcGeTGsGKTT--QvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqI 340 (1172)
T KOG0926|consen 263 RIMEAINENPVVIICGETGSGKTT--QVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQI 340 (1172)
T ss_pred HHHHHhhcCCeEEEecCCCCCccc--cchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEE
Confidence 344555556669999999999998 6999999888876656666678888899988888877665 5555345678889
Q ss_pred EECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhH-HhhCC-CHHHHHHHHH---hCC-----
Q 010709 229 VVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR-MLDMG-FEPQIREVMQ---NLP----- 298 (503)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~-l~~~~-~~~~~~~il~---~~~----- 298 (503)
.+.++.. ..+.|.|||.|.|++.+.+ ++.|.+++.|||||||. -++.+ ..--+.+|+. ...
T Consensus 341 Rfd~ti~--------e~T~IkFMTDGVLLrEi~~-DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~ 411 (1172)
T KOG0926|consen 341 RFDGTIG--------EDTSIKFMTDGVLLREIEN-DFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQ 411 (1172)
T ss_pred EeccccC--------CCceeEEecchHHHHHHHH-hHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 9988743 4589999999999999987 78899999999999994 11111 0111222221 111
Q ss_pred -CCCcEEEEEeeCCHHHHHHH--HHhcC-CCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCC
Q 010709 299 -DKHQTLLFSATMPVEIEALA--QEYLT-DPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPF 374 (503)
Q Consensus 299 -~~~q~i~~SAT~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~ 374 (503)
++.++|+||||+ .+.++. +..+. -|..+.+.. ....+..++........+...+..... .+...|.
T Consensus 412 ~kpLKLIIMSATL--RVsDFtenk~LFpi~pPlikVdA---RQfPVsIHF~krT~~DYi~eAfrKtc~-----IH~kLP~ 481 (1172)
T KOG0926|consen 412 IKPLKLIIMSATL--RVSDFTENKRLFPIPPPLIKVDA---RQFPVSIHFNKRTPDDYIAEAFRKTCK-----IHKKLPP 481 (1172)
T ss_pred cCceeEEEEeeeE--EecccccCceecCCCCceeeeec---ccCceEEEeccCCCchHHHHHHHHHHH-----HhhcCCC
Confidence 267899999999 222222 11111 122333322 222333444443333444443333222 2333688
Q ss_pred CcEEEEEcchhhHHHHHHHHHHC---------------------------------------------------------
Q 010709 375 PLTIVFVERKTRCDEVSEALVAE--------------------------------------------------------- 397 (503)
Q Consensus 375 ~~~lIF~~~~~~~~~l~~~L~~~--------------------------------------------------------- 397 (503)
|.+|||+.++.++++|++.|++.
T Consensus 482 G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~ 561 (1172)
T KOG0926|consen 482 GGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGF 561 (1172)
T ss_pred CcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccc
Confidence 99999999999999999999761
Q ss_pred ------------------------------------------CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccc
Q 010709 398 ------------------------------------------GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVAS 435 (503)
Q Consensus 398 ------------------------------------------~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 435 (503)
.+.|+++|+-++.++|+++++.-..|.+-|+|||++++
T Consensus 562 ~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAE 641 (1172)
T KOG0926|consen 562 ASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAE 641 (1172)
T ss_pred hhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchh
Confidence 14589999999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEccCCCC------------------hhHHHHhhCcceeee
Q 010709 436 RGLDVMGVAHVVNLDLPKV------------------LLAASESLCTTSFNI 469 (503)
Q Consensus 436 ~Gldip~v~~VI~~~~p~s------------------~~~~~Qr~GR~gR~~ 469 (503)
++++||++++||++|..+. -++.-||.|||||+-
T Consensus 642 TSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg 693 (1172)
T KOG0926|consen 642 TSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG 693 (1172)
T ss_pred cccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC
Confidence 9999999999999997653 377889999999974
No 77
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=2.6e-33 Score=285.49 Aligned_cols=303 Identities=19% Similarity=0.192 Sum_probs=225.8
Q ss_pred CCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccC
Q 010709 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (503)
Q Consensus 142 ~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~ 221 (503)
..|+++|..+...++.|+ |..++||+|||++|.+|++...+. |..+.|++||++||.|.++.+..+...+
T Consensus 55 ~~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~VvTpt~~LA~qdae~~~~l~~~L 124 (745)
T TIGR00963 55 MRPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAEWMGQVYRFL 124 (745)
T ss_pred CCccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh--------CCCEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 378999999998887776 999999999999999999655443 4569999999999999999999999887
Q ss_pred CCceEEEEECCccHHHHHHHhhCCCcEEEECcHHH-HHHHHcC------CCCCCCccEEEecchhHHhh-CCCH------
Q 010709 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQG------NTSLSRVSFVILDEADRMLD-MGFE------ 287 (503)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~------~~~l~~~~~vViDEaH~l~~-~~~~------ 287 (503)
++++.++.|+....+... ...++|+|+||++| .+++..+ ...+..+.++||||+|+++- ....
T Consensus 125 -GLsv~~i~g~~~~~~r~~--~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg 201 (745)
T TIGR00963 125 -GLSVGLILSGMSPEERRE--AYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISG 201 (745)
T ss_pred -CCeEEEEeCCCCHHHHHH--hcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcC
Confidence 599999999988655433 34589999999999 8887765 24678899999999997432 0000
Q ss_pred ---------HHHHHHHHhCC--------------------------------------------------------C---
Q 010709 288 ---------PQIREVMQNLP--------------------------------------------------------D--- 299 (503)
Q Consensus 288 ---------~~~~~il~~~~--------------------------------------------------------~--- 299 (503)
.....+.+.+. .
T Consensus 202 ~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~d 281 (745)
T TIGR00963 202 PAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVD 281 (745)
T ss_pred CCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCc
Confidence 00000000000 0
Q ss_pred ----------------------------------------------------------CCcEEEEEeeCCHHHHHHHHHh
Q 010709 300 ----------------------------------------------------------KHQTLLFSATMPVEIEALAQEY 321 (503)
Q Consensus 300 ----------------------------------------------------------~~q~i~~SAT~~~~~~~~~~~~ 321 (503)
-.++.+||+|...+...+.+-|
T Consensus 282 YiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY 361 (745)
T TIGR00963 282 YIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIY 361 (745)
T ss_pred EEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHh
Confidence 0146677888765555444444
Q ss_pred cCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeE
Q 010709 322 LTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHA 401 (503)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v 401 (503)
-- .+.+.....+..... ..-........|...+...+.+... .+.++||||++.+.++.+++.|.+.|+.+
T Consensus 362 ~l-~vv~IPtnkp~~R~d-~~d~i~~t~~~k~~ai~~~i~~~~~-------~grpvLV~t~si~~se~ls~~L~~~gi~~ 432 (745)
T TIGR00963 362 NL-EVVVVPTNRPVIRKD-LSDLVYKTEEEKWKAVVDEIKERHA-------KGQPVLVGTTSVEKSELLSNLLKERGIPH 432 (745)
T ss_pred CC-CEEEeCCCCCeeeee-CCCeEEcCHHHHHHHHHHHHHHHHh-------cCCCEEEEeCcHHHHHHHHHHHHHcCCCe
Confidence 33 332221111111111 1122334456677777776655432 34469999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCC-------CCEEEEccCCCChhHHHHhhCcceee
Q 010709 402 VALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMG-------VAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 402 ~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~-------v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
..+|++ +.+|+..+..|+.+...|+|||++++||+||+. .-+||++++|.+...|.||+||+||.
T Consensus 433 ~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRq 504 (745)
T TIGR00963 433 NVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQ 504 (745)
T ss_pred EEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCC
Confidence 999998 889999999999999999999999999999998 45999999999999999999999995
No 78
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=7e-34 Score=259.24 Aligned_cols=313 Identities=17% Similarity=0.269 Sum_probs=239.1
Q ss_pred cccCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 010709 123 FTDMCLHPSIMKDIEF-HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (503)
Q Consensus 123 ~~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~ 201 (503)
-++++++.+...-|+. +...+++|.|.++|.+.+.|+++++..|||.||++||++|++.. .+.+|+++
T Consensus 73 kd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a-----------dg~alvi~ 141 (695)
T KOG0353|consen 73 KDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA-----------DGFALVIC 141 (695)
T ss_pred cCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc-----------CCceEeec
Confidence 3567788877777753 56788999999999999999999999999999999999999975 57799999
Q ss_pred ccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHh------hCCCcEEEECcHHHHHH---HHc--CCCCCCCc
Q 010709 202 PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL------RGGVSIVVATPGRFLDH---LQQ--GNTSLSRV 270 (503)
Q Consensus 202 Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~Ilv~Tp~~l~~~---l~~--~~~~l~~~ 270 (503)
|...|+..+.-.++.++ +....+.......+..+.. .....+++.||+.+... +.+ ..+....+
T Consensus 142 plislmedqil~lkqlg-----i~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~ 216 (695)
T KOG0353|consen 142 PLISLMEDQILQLKQLG-----IDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFF 216 (695)
T ss_pred hhHHHHHHHHHHHHHhC-----cchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhccee
Confidence 99999998888888886 3334444444433322111 13478999999988321 111 24456778
Q ss_pred cEEEecchhHHhhCC--CHHHHH--HHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEE
Q 010709 271 SFVILDEADRMLDMG--FEPQIR--EVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEK 346 (503)
Q Consensus 271 ~~vViDEaH~l~~~~--~~~~~~--~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (503)
++|.|||+|+..+|| |++.+. .++++--+...+++++||.+..+...++..+.--..+.+. ......++...+..
T Consensus 217 ~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~-a~fnr~nl~yev~q 295 (695)
T KOG0353|consen 217 KLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFR-AGFNRPNLKYEVRQ 295 (695)
T ss_pred EEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheee-cccCCCCceeEeee
Confidence 999999999999886 777665 3455555667799999999998888887776533222221 22333444444333
Q ss_pred cCh--hhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCC
Q 010709 347 VSE--NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGS 424 (503)
Q Consensus 347 ~~~--~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~ 424 (503)
.+. ++-+..+.+++.... .+...||||-+++.|+.++..|+..|+.+..+|..|.+.+|.-+-+.|-.|+
T Consensus 296 kp~n~dd~~edi~k~i~~~f--------~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~e 367 (695)
T KOG0353|consen 296 KPGNEDDCIEDIAKLIKGDF--------AGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGE 367 (695)
T ss_pred CCCChHHHHHHHHHHhcccc--------CCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccc
Confidence 332 333344444443221 2234799999999999999999999999999999999999999999999999
Q ss_pred CcEEEEccccccCCCCCCCCEEEEccCCCChhHHHH
Q 010709 425 TNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASE 460 (503)
Q Consensus 425 ~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Q 460 (503)
++|+|||-++++|||-|+|++||+..+|+++++|.|
T Consensus 368 iqvivatvafgmgidkpdvrfvihhsl~ksienyyq 403 (695)
T KOG0353|consen 368 IQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQ 403 (695)
T ss_pred eEEEEEEeeecccCCCCCeeEEEecccchhHHHHHH
Confidence 999999999999999999999999999999999999
No 79
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=3e-33 Score=286.89 Aligned_cols=303 Identities=17% Similarity=0.157 Sum_probs=214.2
Q ss_pred CcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCC
Q 010709 144 PTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDS 223 (503)
Q Consensus 144 ~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~ 223 (503)
++|+|.+++..+..++..|+.++||+|||++|.+|++...+. ++.++|++|+++||.|+++.+..+...+ +
T Consensus 69 lrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~--------g~~V~VVTpn~yLA~Rdae~m~~l~~~L-G 139 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT--------GKGAMLVTTNDYLAKRDAEEMGPVYEWL-G 139 (762)
T ss_pred CCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc--------CCceEEeCCCHHHHHHHHHHHHHHHhhc-C
Confidence 344444444444434447999999999999999998766543 4569999999999999999999998777 5
Q ss_pred ceEEEEECCcc---HHHHHHHhhCCCcEEEECcHHH-HHHHHc------CCCCCCCccEEEecchhHHhhC-C-------
Q 010709 224 FKTAIVVGGTN---IAEQRSELRGGVSIVVATPGRF-LDHLQQ------GNTSLSRVSFVILDEADRMLDM-G------- 285 (503)
Q Consensus 224 ~~~~~~~~~~~---~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~------~~~~l~~~~~vViDEaH~l~~~-~------- 285 (503)
+.+.+++++.. .....+....+++|+++||++| .+.+.. ....+..+.++|+||||.++-. .
T Consensus 140 Lsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliis 219 (762)
T TIGR03714 140 LTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVIS 219 (762)
T ss_pred CcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeee
Confidence 88888777622 2222233446799999999999 454432 1345678999999999985310 0
Q ss_pred --------CHHHHHHHHHhCCC----------------------------------------------------------
Q 010709 286 --------FEPQIREVMQNLPD---------------------------------------------------------- 299 (503)
Q Consensus 286 --------~~~~~~~il~~~~~---------------------------------------------------------- 299 (503)
.......+...+.+
T Consensus 220 g~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~ 299 (762)
T TIGR03714 220 GAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNK 299 (762)
T ss_pred CCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCC
Confidence 00011111111100
Q ss_pred -----------------------------------------------------------CCcEEEEEeeCCHHHHHHHHH
Q 010709 300 -----------------------------------------------------------KHQTLLFSATMPVEIEALAQE 320 (503)
Q Consensus 300 -----------------------------------------------------------~~q~i~~SAT~~~~~~~~~~~ 320 (503)
-.++.+||+|...+-.++.+-
T Consensus 300 dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~i 379 (762)
T TIGR03714 300 DYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIET 379 (762)
T ss_pred ceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHH
Confidence 014667777775555555443
Q ss_pred hcCCCeEEEeCCCCCCCC-ceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCC
Q 010709 321 YLTDPVQVKVGKVSSPTA-NVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGL 399 (503)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~ 399 (503)
| +-.+.. +. ...+.. .-..-........|...+...+.+... ...++||||++++.++.+++.|.+.|+
T Consensus 380 Y-~l~v~~-IP-t~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~-------~~~pvLIft~s~~~se~ls~~L~~~gi 449 (762)
T TIGR03714 380 Y-SLSVVK-IP-TNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHE-------TGQPVLLITGSVEMSEIYSELLLREGI 449 (762)
T ss_pred h-CCCEEE-cC-CCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhh-------CCCCEEEEECcHHHHHHHHHHHHHCCC
Confidence 3 333222 11 111111 112224555667888888887766432 234699999999999999999999999
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCC---------CCCEEEEccCCCChhHHHHhhCcceee
Q 010709 400 HAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVM---------GVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 400 ~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip---------~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
.+..+||.+.+.++..+.+.++.| .|+|||++++||+||+ ++.+|+++++|..... .||+||+||.
T Consensus 450 ~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRq 524 (762)
T TIGR03714 450 PHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQ 524 (762)
T ss_pred CEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCC
Confidence 999999999999988887777666 7999999999999999 9999999999998776 9999999993
No 80
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3e-33 Score=286.96 Aligned_cols=293 Identities=16% Similarity=0.123 Sum_probs=200.2
Q ss_pred CCCcHHHHHHHHHHhc-C--CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q 010709 142 TRPTSIQAQAMPVALS-G--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (503)
Q Consensus 142 ~~~~~~Q~~~i~~i~~-~--~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 218 (503)
..++++|.+++..+.. | +..++++|||+|||++.+.. +..+ +.++|||||+.+|+.||.++|.++.
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~a-a~~l----------~k~tLILvps~~Lv~QW~~ef~~~~ 322 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTA-ACTV----------KKSCLVLCTSAVSVEQWKQQFKMWS 322 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHH-HHHh----------CCCEEEEeCcHHHHHHHHHHHHHhc
Confidence 4689999999999874 3 36899999999999987543 3332 2459999999999999999999986
Q ss_pred ccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcC--------CCCCCCccEEEecchhHHhhCCCHHHH
Q 010709 219 RSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG--------NTSLSRVSFVILDEADRMLDMGFEPQI 290 (503)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~--------~~~l~~~~~vViDEaH~l~~~~~~~~~ 290 (503)
.. ....+..+.|+... .......|+|+|++++.....+. .+.-..+++||+||||++. ...+
T Consensus 323 ~l-~~~~I~~~tg~~k~-----~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lp----A~~f 392 (732)
T TIGR00603 323 TI-DDSQICRFTSDAKE-----RFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVP----AAMF 392 (732)
T ss_pred CC-CCceEEEEecCccc-----ccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccccc----HHHH
Confidence 32 23455555554321 11234789999999885332211 1233578999999999875 4556
Q ss_pred HHHHHhCCCCCcEEEEEeeCCHHHHH--HHHHhcCCCeEEEeCCC----CCCCCceEEEEEEcC--h-------------
Q 010709 291 REVMQNLPDKHQTLLFSATMPVEIEA--LAQEYLTDPVQVKVGKV----SSPTANVIQILEKVS--E------------- 349 (503)
Q Consensus 291 ~~il~~~~~~~q~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~------------- 349 (503)
.+++..+... ..+++||||..+-.. .+..+++ |......-. ......+....+.++ .
T Consensus 393 r~il~~l~a~-~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~ 470 (732)
T TIGR00603 393 RRVLTIVQAH-CKLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRK 470 (732)
T ss_pred HHHHHhcCcC-cEEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchh
Confidence 6777776544 479999999543221 1222233 322222110 011111111111111 1
Q ss_pred --------hhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHh
Q 010709 350 --------NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFR 421 (503)
Q Consensus 350 --------~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~ 421 (503)
..|...+..++..+ .....++||||.+...+..+++.|. +..+||++++.+|.++++.|+
T Consensus 471 k~~l~~~np~K~~~~~~Li~~h-------e~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr 538 (732)
T TIGR00603 471 RMLLYVMNPNKFRACQFLIRFH-------EQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQ 538 (732)
T ss_pred hhHHhhhChHHHHHHHHHHHHH-------hhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHH
Confidence 11222222222211 1245689999999999888888772 456899999999999999998
Q ss_pred cC-CCcEEEEccccccCCCCCCCCEEEEccCC-CChhHHHHhhCcceeee
Q 010709 422 NG-STNILVATDVASRGLDVMGVAHVVNLDLP-KVLLAASESLCTTSFNI 469 (503)
Q Consensus 422 ~g-~~~vLvaT~~~~~Gldip~v~~VI~~~~p-~s~~~~~Qr~GR~gR~~ 469 (503)
.| .+++||+|+++.+|||+|++++||+++.| .|..+|+||+||++|.-
T Consensus 539 ~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~ 588 (732)
T TIGR00603 539 HNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAK 588 (732)
T ss_pred hCCCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCC
Confidence 75 78999999999999999999999999987 59999999999999954
No 81
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=9.5e-33 Score=286.65 Aligned_cols=297 Identities=19% Similarity=0.215 Sum_probs=216.6
Q ss_pred HHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCC--
Q 010709 146 SIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDS-- 223 (503)
Q Consensus 146 ~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~-- 223 (503)
....+.+.++.+++.+||+|+||+|||++ +|.+.....+ ..++++.++.|+|..|..+++++.+......+
T Consensus 53 ~~~~~i~~ai~~~~vvii~getGsGKTTq--lP~~lle~g~-----~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~ 125 (845)
T COG1643 53 AVRDEILKAIEQNQVVIIVGETGSGKTTQ--LPQFLLEEGL-----GIAGKIGCTQPRRLAARSVAERVAEELGEKLGET 125 (845)
T ss_pred HHHHHHHHHHHhCCEEEEeCCCCCChHHH--HHHHHHhhhc-----ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCce
Confidence 33555666677788899999999999994 6666554433 23567888889999999999888766533212
Q ss_pred ceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchh-HHhhCCCHHH-HHHHHHhCCCCC
Q 010709 224 FKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD-RMLDMGFEPQ-IREVMQNLPDKH 301 (503)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH-~l~~~~~~~~-~~~il~~~~~~~ 301 (503)
+-+.+.+.+. ....+.|.++|.|+|++++.. +..+..+++||||||| +.++.++.-. +..++...+++.
T Consensus 126 VGY~iRfe~~--------~s~~Trik~mTdGiLlrei~~-D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DL 196 (845)
T COG1643 126 VGYSIRFESK--------VSPRTRIKVMTDGILLREIQN-DPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDL 196 (845)
T ss_pred eeEEEEeecc--------CCCCceeEEeccHHHHHHHhh-CcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCc
Confidence 3333444433 334589999999999999987 4559999999999999 4455554443 445577777789
Q ss_pred cEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcC-hhhHHHHHHHHHHHHHHhhhccCCCCCcEEEE
Q 010709 302 QTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVS-ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVF 380 (503)
Q Consensus 302 q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF 380 (503)
++|+||||+.. + ....|+.+...+.+..... .+...+.... ...++...+......... ...|.+|||
T Consensus 197 KiIimSATld~--~-rfs~~f~~apvi~i~GR~f---PVei~Y~~~~~~d~~l~~ai~~~v~~~~~-----~~~GdILvF 265 (845)
T COG1643 197 KLIIMSATLDA--E-RFSAYFGNAPVIEIEGRTY---PVEIRYLPEAEADYILLDAIVAAVDIHLR-----EGSGSILVF 265 (845)
T ss_pred eEEEEecccCH--H-HHHHHcCCCCEEEecCCcc---ceEEEecCCCCcchhHHHHHHHHHHHhcc-----CCCCCEEEE
Confidence 99999999944 3 3455666544555544333 3334442222 222222222222222211 346789999
Q ss_pred EcchhhHHHHHHHHHH----CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCC---
Q 010709 381 VERKTRCDEVSEALVA----EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPK--- 453 (503)
Q Consensus 381 ~~~~~~~~~l~~~L~~----~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~--- 453 (503)
.+++.+++.+++.|.+ ..+.++++||.++.++|.++++.-..|..+|++||++++++|+||+|++||+-+..+
T Consensus 266 LpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~ 345 (845)
T COG1643 266 LPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKR 345 (845)
T ss_pred CCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccc
Confidence 9999999999999998 357899999999999999999998888888999999999999999999999988754
Q ss_pred ---------------ChhHHHHhhCcceeee
Q 010709 454 ---------------VLLAASESLCTTSFNI 469 (503)
Q Consensus 454 ---------------s~~~~~Qr~GR~gR~~ 469 (503)
|-+++.||.|||||+.
T Consensus 346 y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~ 376 (845)
T COG1643 346 YDPRTGLTRLETEPISKASADQRAGRAGRTG 376 (845)
T ss_pred cccccCceeeeEEEechhhhhhhccccccCC
Confidence 3489999999999963
No 82
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.7e-32 Score=267.49 Aligned_cols=297 Identities=19% Similarity=0.222 Sum_probs=220.1
Q ss_pred cHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhcc-C-C
Q 010709 145 TSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS-L-D 222 (503)
Q Consensus 145 ~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~-~-~ 222 (503)
+.+-.+.+..+..++.+||.|+||||||+ ++|.+.+...+. ..+++.+..|+|..|..+++++.+-... + .
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKST--QipQyL~eaG~~-----~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~ 125 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKST--QIPQYLAEAGFA-----SSGKIACTQPRRVAAVSLAKRVAEEMGCQLGE 125 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCccc--cHhHHHHhcccc-----cCCcEEeecCchHHHHHHHHHHHHHhCCCcCc
Confidence 33455677777788889999999999998 577776654432 2344888899999998888887755422 1 2
Q ss_pred CceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhH-HhhCCCHH-HHHHHHHhCCCC
Q 010709 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR-MLDMGFEP-QIREVMQNLPDK 300 (503)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~-l~~~~~~~-~~~~il~~~~~~ 300 (503)
.+-+.+.+.+... ..+.|.++|.|.|++.+.. +-.+.++++||+||||+ -+..+..- .++++++ .+++
T Consensus 126 ~VGY~IRFed~ts--------~~TrikymTDG~LLRE~l~-Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~-~R~~ 195 (674)
T KOG0922|consen 126 EVGYTIRFEDSTS--------KDTRIKYMTDGMLLREILK-DPLLSKYSVIILDEAHERSLHTDILLGLLKKILK-KRPD 195 (674)
T ss_pred eeeeEEEecccCC--------CceeEEEecchHHHHHHhc-CCccccccEEEEechhhhhhHHHHHHHHHHHHHh-cCCC
Confidence 3455666665543 3489999999999999987 45689999999999994 22222222 2333333 3567
Q ss_pred CcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEE
Q 010709 301 HQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVF 380 (503)
Q Consensus 301 ~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF 380 (503)
.++|+||||+. .+ ....|+.+...+.+.... ..+...+...+..+.++..+..+.+.+.. .+.+-+|||
T Consensus 196 LklIimSATld--a~-kfS~yF~~a~i~~i~GR~---fPVei~y~~~p~~dYv~a~~~tv~~Ih~~-----E~~GDILvF 264 (674)
T KOG0922|consen 196 LKLIIMSATLD--AE-KFSEYFNNAPILTIPGRT---FPVEILYLKEPTADYVDAALITVIQIHLT-----EPPGDILVF 264 (674)
T ss_pred ceEEEEeeeec--HH-HHHHHhcCCceEeecCCC---CceeEEeccCCchhhHHHHHHHHHHHHcc-----CCCCCEEEE
Confidence 89999999994 33 445566654444444433 34555565566666666666665554433 466779999
Q ss_pred EcchhhHHHHHHHHHHC--C------CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCC
Q 010709 381 VERKTRCDEVSEALVAE--G------LHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLP 452 (503)
Q Consensus 381 ~~~~~~~~~l~~~L~~~--~------~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p 452 (503)
.+++++++.+++.|.+. . .-+.++||.++.++|.++++.-..|.++|+++|+++++.++||++.+||+.|+-
T Consensus 265 LtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~v 344 (674)
T KOG0922|consen 265 LTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFV 344 (674)
T ss_pred eCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCce
Confidence 99999999999999765 1 135789999999999999999999999999999999999999999999998863
Q ss_pred ------------------CChhHHHHhhCcceeee
Q 010709 453 ------------------KVLLAASESLCTTSFNI 469 (503)
Q Consensus 453 ------------------~s~~~~~Qr~GR~gR~~ 469 (503)
-|.++..||.|||||+-
T Consensus 345 K~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~ 379 (674)
T KOG0922|consen 345 KQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG 379 (674)
T ss_pred EEEeeccccCccceeEEechHHHHhhhcccCCCCC
Confidence 36699999999999973
No 83
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=2.5e-32 Score=277.55 Aligned_cols=321 Identities=19% Similarity=0.251 Sum_probs=229.0
Q ss_pred HHHCCCCCCcHHHHHHHHHHhc-CCCeEEEccCCCchhHHhHHHHHHHHHhcCC--CCCCCCCeEEEEcccHHHHHHHHH
Q 010709 136 IEFHEYTRPTSIQAQAMPVALS-GRDLLGCAETGSGKTAAFTIPMIQHCVAQTP--VGRGDGPLALVLAPTRELAQQIEK 212 (503)
Q Consensus 136 l~~~~~~~~~~~Q~~~i~~i~~-~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~--~~~~~~~~~lil~Ptr~La~q~~~ 212 (503)
...++|..+..+|.+++|.+++ +.|+|||||||+|||-.|++.+|+.+.+... .-..++-+++||+|+++||..+.+
T Consensus 103 k~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~ 182 (1230)
T KOG0952|consen 103 KGFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVD 182 (1230)
T ss_pred hhcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHH
Confidence 4557888999999999999985 5689999999999999999999887765221 112346789999999999999888
Q ss_pred HHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcC----CCCCCCccEEEecchhHHhhCCCHH
Q 010709 213 EVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG----NTSLSRVSFVILDEADRMLDMGFEP 288 (503)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~----~~~l~~~~~vViDEaH~l~~~~~~~ 288 (503)
.+.+-+..+ ++.+..++|++...... -..++|+|+||+++- .+.+. ...+..+++|||||+| ++....++
T Consensus 183 ~~~kkl~~~-gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwD-vvTRk~~~d~~l~~~V~LviIDEVH-lLhd~RGp 256 (1230)
T KOG0952|consen 183 KFSKKLAPL-GISVRELTGDTQLTKTE---IADTQIIVTTPEKWD-VVTRKSVGDSALFSLVRLVIIDEVH-LLHDDRGP 256 (1230)
T ss_pred HHhhhcccc-cceEEEecCcchhhHHH---HHhcCEEEeccccee-eeeeeeccchhhhhheeeEEeeeeh-hhcCcccc
Confidence 887666554 58999999998765543 234999999999983 33322 1246678999999999 55555777
Q ss_pred HHHHHHHhC-------CCCCcEEEEEeeCCHHHHHHHHHhcCCC-eEEEeCCCCCCCCceEEEEEEcChh---hHHHHHH
Q 010709 289 QIREVMQNL-------PDKHQTLLFSATMPVEIEALAQEYLTDP-VQVKVGKVSSPTANVIQILEKVSEN---EKVDRLL 357 (503)
Q Consensus 289 ~~~~il~~~-------~~~~q~i~~SAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~k~~~l~ 357 (503)
.++.|+.+. ....++|++|||+|+ ..+.+...-.+| ..+...........+.+.+...+.. .+.....
T Consensus 257 vlEtiVaRtlr~vessqs~IRivgLSATlPN-~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d 335 (1230)
T KOG0952|consen 257 VLETIVARTLRLVESSQSMIRIVGLSATLPN-YEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNID 335 (1230)
T ss_pred hHHHHHHHHHHHHHhhhhheEEEEeeccCCC-HHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHH
Confidence 777776554 346789999999975 444555443442 2232222233334455555554433 2221111
Q ss_pred HHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCC-----------------------CeEEEEcCCCCHHHHH
Q 010709 358 ALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEG-----------------------LHAVALHGGRNQSDRE 414 (503)
Q Consensus 358 ~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~-----------------------~~v~~lh~~~~~~~r~ 414 (503)
..+........ ..+.+++|||.+++.....++.|.+.. .....+|+||...+|.
T Consensus 336 ~~~~~kv~e~~---~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~ 412 (1230)
T KOG0952|consen 336 EVCYDKVVEFL---QEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQ 412 (1230)
T ss_pred HHHHHHHHHHH---HcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHH
Confidence 11111111111 234569999999999999999886521 2466789999999999
Q ss_pred HHHHHHhcCCCcEEEEccccccCCCCCCCCEEEE-----ccCCC------ChhHHHHhhCccee
Q 010709 415 SALRDFRNGSTNILVATDVASRGLDVMGVAHVVN-----LDLPK------VLLAASESLCTTSF 467 (503)
Q Consensus 415 ~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~-----~~~p~------s~~~~~Qr~GR~gR 467 (503)
-+.+.|..|.++||+||..++.|+|+|+ .+||. ||..+ .+-+-+|.+|||||
T Consensus 413 l~E~~F~~G~i~vL~cTaTLAwGVNLPA-~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGR 475 (1230)
T KOG0952|consen 413 LVEKEFKEGHIKVLCCTATLAWGVNLPA-YAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGR 475 (1230)
T ss_pred HHHHHHhcCCceEEEecceeeeccCCcc-eEEEecCCcccccccCceeeehHHHHHHHHhccCC
Confidence 9999999999999999999999999994 56664 33333 35778899999999
No 84
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00 E-value=8e-31 Score=237.97 Aligned_cols=202 Identities=51% Similarity=0.851 Sum_probs=182.4
Q ss_pred cccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcc
Q 010709 123 FTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 202 (503)
Q Consensus 123 ~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~P 202 (503)
|+++++++.+.+.+..+|+..|+++|.++++.+.+|+++++++|||+|||++|++|++..+.... ...+++++|++|
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~---~~~~~~viii~p 77 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP---KKDGPQALILAP 77 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc---ccCCceEEEEcC
Confidence 67889999999999999999999999999999999999999999999999999999998877642 124688999999
Q ss_pred cHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHh
Q 010709 203 TRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRML 282 (503)
Q Consensus 203 tr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~ 282 (503)
+++|+.|+.+.++.+.... ++.+..+.|+....+.......+++|+|+||+.+.+.+.+....+.+++++|+||+|++.
T Consensus 78 ~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~ 156 (203)
T cd00268 78 TRELALQIAEVARKLGKHT-NLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRML 156 (203)
T ss_pred CHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhh
Confidence 9999999999999987654 588888999988777666666689999999999999998887888999999999999998
Q ss_pred hCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEE
Q 010709 283 DMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQV 328 (503)
Q Consensus 283 ~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~ 328 (503)
+.++...+..++..++.++|++++|||+++....++..++.+|..+
T Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 157 DMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred ccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 8889999999999999899999999999999999999999988765
No 85
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.98 E-value=5.2e-30 Score=268.85 Aligned_cols=298 Identities=20% Similarity=0.203 Sum_probs=205.4
Q ss_pred CCCcHHHHHHHHHHhcC---CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q 010709 142 TRPTSIQAQAMPVALSG---RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (503)
Q Consensus 142 ~~~~~~Q~~~i~~i~~~---~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 218 (503)
..+++.|.++++.+.++ +++++.|+||+|||.+|+.++...+.. ++++||++|+++|+.|+.+.+++.+
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~--------g~~vLvLvPt~~L~~Q~~~~l~~~f 214 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ--------GKQALVLVPEIALTPQMLARFRARF 214 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc--------CCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 36899999999999874 679999999999999997766554432 5789999999999999999998865
Q ss_pred ccCCCceEEEEECCccHHHHHHH----hhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCC---HHHHH
Q 010709 219 RSLDSFKTAIVVGGTNIAEQRSE----LRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGF---EPQIR 291 (503)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~---~~~~~ 291 (503)
+..+..++++....+.... ..+..+|+|+|++.+. ..+.++++|||||+|....... .-..+
T Consensus 215 ----g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r 283 (679)
T PRK05580 215 ----GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHAR 283 (679)
T ss_pred ----CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHH
Confidence 3578888888776543322 2356899999998764 3477899999999997543321 11112
Q ss_pred H--HHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhh-------HHHHHHHHHHH
Q 010709 292 E--VMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENE-------KVDRLLALLVE 362 (503)
Q Consensus 292 ~--il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------k~~~l~~~l~~ 362 (503)
. ++.....+.++|++|||++.+....+.. +....+...............+....... -...++..+.+
T Consensus 284 ~va~~ra~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~ 361 (679)
T PRK05580 284 DLAVVRAKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQ 361 (679)
T ss_pred HHHHHHhhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHH
Confidence 2 2334456789999999997554443321 22223322222111111112222221110 11234444444
Q ss_pred HHHhhhccCCCCCcEEEEEcchh---------------------------------------------------------
Q 010709 363 EAFLAEKSCHPFPLTIVFVERKT--------------------------------------------------------- 385 (503)
Q Consensus 363 ~~~~~~~~~~~~~~~lIF~~~~~--------------------------------------------------------- 385 (503)
... ...++|||+|++.
T Consensus 362 ~l~-------~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~ 434 (679)
T PRK05580 362 RLE-------RGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVP 434 (679)
T ss_pred HHH-------cCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEE
Confidence 332 2235888877532
Q ss_pred ---hHHHHHHHHHHC--CCeEEEEcCCCCH--HHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEE--ccCCCC--
Q 010709 386 ---RCDEVSEALVAE--GLHAVALHGGRNQ--SDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN--LDLPKV-- 454 (503)
Q Consensus 386 ---~~~~l~~~L~~~--~~~v~~lh~~~~~--~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~--~~~p~s-- 454 (503)
.++.+++.|.+. +.++..+|+++.+ .++.++++.|++|+.+|||+|+++++|+|+|+|++|+. +|.+-+
T Consensus 435 ~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~p 514 (679)
T PRK05580 435 VGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSP 514 (679)
T ss_pred eeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCC
Confidence 346778888775 7889999999874 67899999999999999999999999999999999954 454433
Q ss_pred --------hhHHHHhhCccee
Q 010709 455 --------LLAASESLCTTSF 467 (503)
Q Consensus 455 --------~~~~~Qr~GR~gR 467 (503)
...|.|++||+||
T Consensus 515 dfra~Er~~~~l~q~~GRagR 535 (679)
T PRK05580 515 DFRASERTFQLLTQVAGRAGR 535 (679)
T ss_pred ccchHHHHHHHHHHHHhhccC
Confidence 3678999999999
No 86
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.98 E-value=8.5e-31 Score=262.24 Aligned_cols=301 Identities=21% Similarity=0.199 Sum_probs=202.4
Q ss_pred CCCcHHHHHHHHHHhc----CCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHH
Q 010709 142 TRPTSIQAQAMPVALS----GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (503)
Q Consensus 142 ~~~~~~Q~~~i~~i~~----~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 217 (503)
..|+++|.+++..+.+ ++..++++|||+|||..++. ++..+ +..+|||+|+++|+.||++.+.+.
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~-~~~~~----------~~~~Lvlv~~~~L~~Qw~~~~~~~ 103 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAE-AIAEL----------KRSTLVLVPTKELLDQWAEALKKF 103 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHH-HHHHh----------cCCEEEEECcHHHHHHHHHHHHHh
Confidence 4799999999999998 78899999999999987643 33332 233999999999999999888776
Q ss_pred hccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhC
Q 010709 218 SRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL 297 (503)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~ 297 (503)
.... ..++.+.|+. ... .. ..|.|+|.+.+........+...++++||+||||++... ....+...+
T Consensus 104 ~~~~--~~~g~~~~~~-~~~-----~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~----~~~~~~~~~ 170 (442)
T COG1061 104 LLLN--DEIGIYGGGE-KEL-----EP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAP----SYRRILELL 170 (442)
T ss_pred cCCc--cccceecCce-ecc-----CC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcH----HHHHHHHhh
Confidence 6321 1233333333 111 11 469999999997752112344557999999999998744 344555555
Q ss_pred CCCCcEEEEEeeCCHHHHH---HHHHhcCCCeEEEeCCCC----CCCCceEEEEEEc--ChhhHHHH--HH---------
Q 010709 298 PDKHQTLLFSATMPVEIEA---LAQEYLTDPVQVKVGKVS----SPTANVIQILEKV--SENEKVDR--LL--------- 357 (503)
Q Consensus 298 ~~~~q~i~~SAT~~~~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~k~~~--l~--------- 357 (503)
.....++++|||++..... .+..+++ |......... ............+ ........ ..
T Consensus 171 ~~~~~~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~ 249 (442)
T COG1061 171 SAAYPRLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRA 249 (442)
T ss_pred hcccceeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhh
Confidence 4433389999998643311 1122222 2232222110 0111111111111 11000000 00
Q ss_pred -------------HHHHH---HHHhhhccCC-CCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHH
Q 010709 358 -------------ALLVE---EAFLAEKSCH-PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDF 420 (503)
Q Consensus 358 -------------~~l~~---~~~~~~~~~~-~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f 420 (503)
..... .........+ ...+++|||.+..++..++..|...+. +..+.+..+..+|..+++.|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~f 328 (442)
T COG1061 250 RGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERF 328 (442)
T ss_pred hhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHH
Confidence 00000 0000000001 345799999999999999999998888 88999999999999999999
Q ss_pred hcCCCcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 421 RNGSTNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 421 ~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
+.|..++||++.++.+|+|+|+++++|....+.|...|+||+||.=|.
T Consensus 329 r~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 329 RTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred HcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 999999999999999999999999999999999999999999998884
No 87
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.97 E-value=1.1e-29 Score=269.82 Aligned_cols=305 Identities=19% Similarity=0.221 Sum_probs=194.2
Q ss_pred CCcHHHHHHHHHHhcC--CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhcc
Q 010709 143 RPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (503)
Q Consensus 143 ~~~~~Q~~~i~~i~~~--~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~ 220 (503)
.|.|+|..+...++.. ..++++.++|.|||+.+.+ ++..+... +...++|||||. .|..||..++.+.+
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAgl-il~~l~~~-----g~~~rvLIVvP~-sL~~QW~~El~~kF-- 222 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGM-IIHQQLLT-----GRAERVLILVPE-TLQHQWLVEMLRRF-- 222 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHH-HHHHHHHc-----CCCCcEEEEcCH-HHHHHHHHHHHHHh--
Confidence 5999999998877644 4699999999999998754 44443332 224579999998 79999999997654
Q ss_pred CCCceEEEEECCccHHHHHH---HhhCCCcEEEECcHHHHHHHH-cCCCCCCCccEEEecchhHHhhCC-CHHHHHHHHH
Q 010709 221 LDSFKTAIVVGGTNIAEQRS---ELRGGVSIVVATPGRFLDHLQ-QGNTSLSRVSFVILDEADRMLDMG-FEPQIREVMQ 295 (503)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~Ilv~Tp~~l~~~l~-~~~~~l~~~~~vViDEaH~l~~~~-~~~~~~~il~ 295 (503)
++...++.++.. ..... ......+++|++.+.+.+.-. ...+.-..+++||+||||++.... ......+.+.
T Consensus 223 --~l~~~i~~~~~~-~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~ 299 (956)
T PRK04914 223 --NLRFSLFDEERY-AEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVE 299 (956)
T ss_pred --CCCeEEEcCcch-hhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHH
Confidence 233333332221 11000 111246899999988764211 112233478999999999986321 1111122333
Q ss_pred hC-CCCCcEEEEEeeCCH-HHHH------------------H-------------HH-----------------HhcCC-
Q 010709 296 NL-PDKHQTLLFSATMPV-EIEA------------------L-------------AQ-----------------EYLTD- 324 (503)
Q Consensus 296 ~~-~~~~q~i~~SAT~~~-~~~~------------------~-------------~~-----------------~~~~~- 324 (503)
.+ .....++++||||-. ...+ + +. .++.+
T Consensus 300 ~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~ 379 (956)
T PRK04914 300 QLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQ 379 (956)
T ss_pred HHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhccc
Confidence 22 223458999999921 0000 0 00 01100
Q ss_pred ----------------------------------CeEEEeCCC---CCCCCceEEEEEEcCh------------------
Q 010709 325 ----------------------------------PVQVKVGKV---SSPTANVIQILEKVSE------------------ 349 (503)
Q Consensus 325 ----------------------------------~~~~~~~~~---~~~~~~~~~~~~~~~~------------------ 349 (503)
.+.++.... ..+...........+.
T Consensus 380 ~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l 459 (956)
T PRK04914 380 DIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDML 459 (956)
T ss_pred chhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhc
Confidence 000000000 0001111111111110
Q ss_pred ------------------hhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHH-HCCCeEEEEcCCCCH
Q 010709 350 ------------------NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALV-AEGLHAVALHGGRNQ 410 (503)
Q Consensus 350 ------------------~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~-~~~~~v~~lh~~~~~ 410 (503)
..|+..+..++. .....|+||||+++..+..+++.|+ ..|+.+..+||+|++
T Consensus 460 ~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~---------~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~ 530 (956)
T PRK04914 460 YPEQIYQEFEDNATWWNFDPRVEWLIDFLK---------SHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSI 530 (956)
T ss_pred CHHHHHHHHhhhhhccccCHHHHHHHHHHH---------hcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCH
Confidence 011111111111 1335689999999999999999994 569999999999999
Q ss_pred HHHHHHHHHHhcC--CCcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 411 SDRESALRDFRNG--STNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 411 ~~r~~~~~~f~~g--~~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
.+|.++++.|+++ ..+|||||+++++|+|++.+++||+||+|+++..|.||+||+||.
T Consensus 531 ~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~Ri 590 (956)
T PRK04914 531 IERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRI 590 (956)
T ss_pred HHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccC
Confidence 9999999999974 599999999999999999999999999999999999999999993
No 88
>PRK09694 helicase Cas3; Provisional
Probab=99.97 E-value=1.8e-29 Score=266.42 Aligned_cols=313 Identities=20% Similarity=0.187 Sum_probs=201.8
Q ss_pred CCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhcc
Q 010709 141 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (503)
Q Consensus 141 ~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~ 220 (503)
...|+|+|..+......+.-+||.+|||+|||.+++..+. .+... +...+++|..||+++++|++++++++...
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~-~l~~~-----~~~~gi~~aLPT~Atan~m~~Rl~~~~~~ 357 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAW-RLIDQ-----GLADSIIFALPTQATANAMLSRLEALASK 357 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHH-HHHHh-----CCCCeEEEECcHHHHHHHHHHHHHHHHHH
Confidence 4589999998865444456699999999999999866544 33332 12467999999999999999999875532
Q ss_pred C-CCceEEEEECCccHHHHH---------------------HHhh---C---CCcEEEECcHHHHHHHHcCC-CCCCC--
Q 010709 221 L-DSFKTAIVVGGTNIAEQR---------------------SELR---G---GVSIVVATPGRFLDHLQQGN-TSLSR-- 269 (503)
Q Consensus 221 ~-~~~~~~~~~~~~~~~~~~---------------------~~~~---~---~~~Ilv~Tp~~l~~~l~~~~-~~l~~-- 269 (503)
. .+..+.+.+|........ ..+. + -..|+|||...++....... ..++.
T Consensus 358 ~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~ 437 (878)
T PRK09694 358 LFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFG 437 (878)
T ss_pred hcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHh
Confidence 2 234566776654321110 0111 1 16899999999875554422 12222
Q ss_pred --ccEEEecchhHHhhCCCHHHHHHHHHhC-CCCCcEEEEEeeCCHHHHHHHHHhcCC--C--------eEEEeCCC---
Q 010709 270 --VSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEIEALAQEYLTD--P--------VQVKVGKV--- 333 (503)
Q Consensus 270 --~~~vViDEaH~l~~~~~~~~~~~il~~~-~~~~q~i~~SAT~~~~~~~~~~~~~~~--~--------~~~~~~~~--- 333 (503)
-++|||||+|.+ +......+..+++.+ .....+|+||||+|......+..-+.. + ........
T Consensus 438 La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~ 516 (878)
T PRK09694 438 LGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQ 516 (878)
T ss_pred hccCeEEEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccce
Confidence 258999999954 322333445555443 235669999999998876544332221 0 00000000
Q ss_pred -----CCC---CCceEEEEEEc--ChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCC---Ce
Q 010709 334 -----SSP---TANVIQILEKV--SENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEG---LH 400 (503)
Q Consensus 334 -----~~~---~~~~~~~~~~~--~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~---~~ 400 (503)
... .......+... ........++..+.+.. ...+++|||||+++.|+.+++.|++.+ .+
T Consensus 517 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~-------~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~ 589 (878)
T PRK09694 517 RFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA-------NAGAQVCLICNLVDDAQKLYQRLKELNNTQVD 589 (878)
T ss_pred eeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHH-------hcCCEEEEEECCHHHHHHHHHHHHhhCCCCce
Confidence 000 00011111111 11011123333333322 123469999999999999999999764 68
Q ss_pred EEEEcCCCCHHHH----HHHHHHH-hcCC---CcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCcceeeee
Q 010709 401 AVALHGGRNQSDR----ESALRDF-RNGS---TNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFNIT 470 (503)
Q Consensus 401 v~~lh~~~~~~~r----~~~~~~f-~~g~---~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~~~ 470 (503)
+..+||.+++.+| .++++.| ++|+ ..|||||+++++||||+ ++++|....| ++.++||+||+||...
T Consensus 590 v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId-~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 590 IDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLD-FDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecC-CCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 9999999999999 4567788 6666 47999999999999995 8999998888 7899999999999754
No 89
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=7.3e-31 Score=254.89 Aligned_cols=301 Identities=18% Similarity=0.206 Sum_probs=226.9
Q ss_pred CCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhc-c
Q 010709 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR-S 220 (503)
Q Consensus 142 ~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~-~ 220 (503)
...+++-.+.+.++.+++.+||.|+||||||+ ++|.+.+...+- ..|+++-+..|+|..|..++.++.+-+. .
T Consensus 264 LPVy~ykdell~av~e~QVLiI~GeTGSGKTT--QiPQyL~EaGyt----k~gk~IgcTQPRRVAAmSVAaRVA~EMgvk 337 (902)
T KOG0923|consen 264 LPVYPYKDELLKAVKEHQVLIIVGETGSGKTT--QIPQYLYEAGYT----KGGKKIGCTQPRRVAAMSVAARVAEEMGVK 337 (902)
T ss_pred CCchhhHHHHHHHHHhCcEEEEEcCCCCCccc--cccHHHHhcccc----cCCceEeecCcchHHHHHHHHHHHHHhCcc
Confidence 34566777888888899999999999999998 588887765542 2345588888999999998877765442 1
Q ss_pred C-CCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhH-HhhCCCHHHHHHHHHhCC
Q 010709 221 L-DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR-MLDMGFEPQIREVMQNLP 298 (503)
Q Consensus 221 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~-l~~~~~~~~~~~il~~~~ 298 (503)
+ ..+-+.+.+.+... ..+-|.+||.|+|++.+.. ...|..+++|||||||. -+..+..-.+-+-+.+++
T Consensus 338 LG~eVGYsIRFEdcTS--------ekTvlKYMTDGmLlREfL~-epdLasYSViiiDEAHERTL~TDILfgLvKDIar~R 408 (902)
T KOG0923|consen 338 LGHEVGYSIRFEDCTS--------EKTVLKYMTDGMLLREFLS-EPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFR 408 (902)
T ss_pred cccccceEEEeccccC--------cceeeeeecchhHHHHHhc-cccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhC
Confidence 1 12334455544432 3478999999999999876 66899999999999994 333333333444456678
Q ss_pred CCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEE
Q 010709 299 DKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTI 378 (503)
Q Consensus 299 ~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~l 378 (503)
++.+++++|||+.. + -...|+.+...+.+.. ....+..++...+....++..+..+.+.+.. .|.+-+|
T Consensus 409 pdLKllIsSAT~DA--e-kFS~fFDdapIF~iPG---RRyPVdi~Yt~~PEAdYldAai~tVlqIH~t-----qp~GDIL 477 (902)
T KOG0923|consen 409 PDLKLLISSATMDA--E-KFSAFFDDAPIFRIPG---RRYPVDIFYTKAPEADYLDAAIVTVLQIHLT-----QPLGDIL 477 (902)
T ss_pred CcceEEeeccccCH--H-HHHHhccCCcEEeccC---cccceeeecccCCchhHHHHHHhhheeeEec-----cCCccEE
Confidence 99999999999943 3 3344555544443332 3345666777777778777777666554332 5667899
Q ss_pred EEEcchhhHHHHHHHHHHC---------CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEc
Q 010709 379 VFVERKTRCDEVSEALVAE---------GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNL 449 (503)
Q Consensus 379 IF~~~~~~~~~l~~~L~~~---------~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~ 449 (503)
||...+++++...+.|... .+-++++|+.++.+.|..+++.-..|.++|++||++++++|+|++|.+||+-
T Consensus 478 VFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDp 557 (902)
T KOG0923|consen 478 VFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDP 557 (902)
T ss_pred EEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecC
Confidence 9999999988877777542 3568899999999999999999999999999999999999999999999997
Q ss_pred cCCC------------------ChhHHHHhhCcceee
Q 010709 450 DLPK------------------VLLAASESLCTTSFN 468 (503)
Q Consensus 450 ~~p~------------------s~~~~~Qr~GR~gR~ 468 (503)
|+.+ |.++..||.|||||+
T Consensus 558 Gf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRt 594 (902)
T KOG0923|consen 558 GFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRT 594 (902)
T ss_pred ccccccCcCCCcCceeEEEeeechhhhhhhccccCCC
Confidence 7644 458999999999996
No 90
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=1.3e-29 Score=254.96 Aligned_cols=297 Identities=21% Similarity=0.216 Sum_probs=221.0
Q ss_pred CCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCC
Q 010709 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (503)
Q Consensus 143 ~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~ 222 (503)
.|..+|++|+-++..|..|+|.|+|.+|||+++..++...-. ++.+.+|..|-++|.+|-++.|++-+..
T Consensus 297 elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~--------h~TR~iYTSPIKALSNQKfRDFk~tF~D-- 366 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQK--------HMTRTIYTSPIKALSNQKFRDFKETFGD-- 366 (1248)
T ss_pred CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHh--------hccceEecchhhhhccchHHHHHHhccc--
Confidence 688999999999999999999999999999988766554322 2577999999999999999999876532
Q ss_pred CceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCc
Q 010709 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQ 302 (503)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q 302 (503)
+++++|+.. +.....++|||.+.|..++.++.-..+++.+||+||+|.+.+...+..|++++-.+|...+
T Consensus 367 ---vgLlTGDvq-------inPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~ 436 (1248)
T KOG0947|consen 367 ---VGLLTGDVQ-------INPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVN 436 (1248)
T ss_pred ---cceeeccee-------eCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccce
Confidence 237777763 4556899999999999999998878889999999999998888899999999999999999
Q ss_pred EEEEEeeCCHHHHHHHHHh---cCCCeEEEeCCCCCCCCceEEEEEEcChhh----------------------------
Q 010709 303 TLLFSATMPVEIEALAQEY---LTDPVQVKVGKVSSPTANVIQILEKVSENE---------------------------- 351 (503)
Q Consensus 303 ~i~~SAT~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 351 (503)
+|++|||+|+..+ ++... -.....+. ........+.+++..-...-
T Consensus 437 ~IlLSATVPN~~E-FA~WIGRtK~K~IyVi--ST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~ 513 (1248)
T KOG0947|consen 437 FILLSATVPNTLE-FADWIGRTKQKTIYVI--STSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFV 513 (1248)
T ss_pred EEEEeccCCChHH-HHHHhhhccCceEEEE--ecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccccc
Confidence 9999999987654 44322 22222221 11111111111111100000
Q ss_pred -----------------------------------HHH--HHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHH
Q 010709 352 -----------------------------------KVD--RLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEAL 394 (503)
Q Consensus 352 -----------------------------------k~~--~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L 394 (503)
+.. ....++. +... ..--|+||||-+++.|++.++.|
T Consensus 514 ~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin-~L~k-----~~lLP~VvFvFSkkrCde~a~~L 587 (1248)
T KOG0947|consen 514 DVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLIN-HLRK-----KNLLPVVVFVFSKKRCDEYADYL 587 (1248)
T ss_pred ccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHH-HHhh-----cccCceEEEEEccccHHHHHHHH
Confidence 000 0111111 0000 11236999999999999999999
Q ss_pred HHCC---------------------------------------CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccc
Q 010709 395 VAEG---------------------------------------LHAVALHGGRNQSDRESALRDFRNGSTNILVATDVAS 435 (503)
Q Consensus 395 ~~~~---------------------------------------~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 435 (503)
...+ -.+..+|||+-+--+.-+.-.|..|-++||+||..++
T Consensus 588 ~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFA 667 (1248)
T KOG0947|consen 588 TNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFA 667 (1248)
T ss_pred hccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhh
Confidence 6522 2477899999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEccCCC---------ChhHHHHhhCcceeee
Q 010709 436 RGLDVMGVAHVVNLDLPK---------VLLAASESLCTTSFNI 469 (503)
Q Consensus 436 ~Gldip~v~~VI~~~~p~---------s~~~~~Qr~GR~gR~~ 469 (503)
+|+|+| +++||+-.+.+ .+-+|.|+.|||||--
T Consensus 668 MGVNMP-ARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRG 709 (1248)
T KOG0947|consen 668 MGVNMP-ARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRG 709 (1248)
T ss_pred hhcCCC-ceeEEeeehhhccCcceeecCChhHHhhhccccccc
Confidence 999999 57777665543 4689999999999953
No 91
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=5.4e-29 Score=246.99 Aligned_cols=309 Identities=21% Similarity=0.258 Sum_probs=230.6
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHHHhcC------CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcc
Q 010709 129 HPSIMKDIEFHEYTRPTSIQAQAMPVALSG------RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 202 (503)
Q Consensus 129 ~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~------~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~P 202 (503)
...+.+.+-..=.-++|..|.+++..|... .+-++.|..|||||++++++++..+.. |.++.+++|
T Consensus 248 ~~~l~~~~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~--------G~Q~ALMAP 319 (677)
T COG1200 248 NGELLAKFLAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA--------GYQAALMAP 319 (677)
T ss_pred cHHHHHHHHHhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc--------CCeeEEecc
Confidence 344455543333337999999999998843 257899999999999998888877554 788999999
Q ss_pred cHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHH---HHhh-CCCcEEEECcHHHHHHHHcCCCCCCCccEEEecch
Q 010709 203 TRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR---SELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEA 278 (503)
Q Consensus 203 tr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEa 278 (503)
|..||.|.++.+.+++..+ ++.+.+++|........ ..+. +..+|+|+| +.+.+....+.++.+|||||=
T Consensus 320 TEILA~QH~~~~~~~l~~~-~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGT-----HALiQd~V~F~~LgLVIiDEQ 393 (677)
T COG1200 320 TEILAEQHYESLRKWLEPL-GIRVALLTGSLKGKARKEILEQLASGEIDIVVGT-----HALIQDKVEFHNLGLVIIDEQ 393 (677)
T ss_pred HHHHHHHHHHHHHHHhhhc-CCeEEEeecccchhHHHHHHHHHhCCCCCEEEEc-----chhhhcceeecceeEEEEecc
Confidence 9999999999999999887 49999999987654433 3333 459999999 444455778999999999999
Q ss_pred hHHhhCCCHHHHHHHHHhCCC-CCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHH
Q 010709 279 DRMLDMGFEPQIREVMQNLPD-KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLL 357 (503)
Q Consensus 279 H~l~~~~~~~~~~~il~~~~~-~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 357 (503)
|| |+..-+..+..-.. .+.++.|||||-+.. ++-..+++-..-.++..+.-...+....... ++...++
T Consensus 394 HR-----FGV~QR~~L~~KG~~~Ph~LvMTATPIPRT--LAlt~fgDldvS~IdElP~GRkpI~T~~i~~---~~~~~v~ 463 (677)
T COG1200 394 HR-----FGVHQRLALREKGEQNPHVLVMTATPIPRT--LALTAFGDLDVSIIDELPPGRKPITTVVIPH---ERRPEVY 463 (677)
T ss_pred cc-----ccHHHHHHHHHhCCCCCcEEEEeCCCchHH--HHHHHhccccchhhccCCCCCCceEEEEecc---ccHHHHH
Confidence 99 56556666666555 577999999984433 3444455433333444444444444444433 4555666
Q ss_pred HHHHHHHHhhhccCCCCCcEEEEEcchhhH--------HHHHHHHHHC--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcE
Q 010709 358 ALLVEEAFLAEKSCHPFPLTIVFVERKTRC--------DEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNI 427 (503)
Q Consensus 358 ~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~--------~~l~~~L~~~--~~~v~~lh~~~~~~~r~~~~~~f~~g~~~v 427 (503)
..+.+.... +.++.|.|+-.++. ..+++.|... ++++..+||.|+.++++++++.|++|+.+|
T Consensus 464 e~i~~ei~~-------GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~I 536 (677)
T COG1200 464 ERIREEIAK-------GRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDI 536 (677)
T ss_pred HHHHHHHHc-------CCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcE
Confidence 666655543 34589999987654 4566666643 567999999999999999999999999999
Q ss_pred EEEccccccCCCCCCCCEEEEccCCC-ChhHHHHhhCcceee
Q 010709 428 LVATDVASRGLDVMGVAHVVNLDLPK-VLLAASESLCTTSFN 468 (503)
Q Consensus 428 LvaT~~~~~Gldip~v~~VI~~~~p~-s~~~~~Qr~GR~gR~ 468 (503)
||||.+.+.|||+|++++.|..+.-+ -.++.=|--||+||.
T Consensus 537 LVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG 578 (677)
T COG1200 537 LVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRG 578 (677)
T ss_pred EEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCC
Confidence 99999999999999999999887654 356667777888883
No 92
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=8e-29 Score=259.00 Aligned_cols=340 Identities=20% Similarity=0.195 Sum_probs=258.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhc----CC--CeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 010709 128 LHPSIMKDIEFHEYTRPTSIQAQAMPVALS----GR--DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (503)
Q Consensus 128 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~----~~--~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~ 201 (503)
.+......+...-.-.-|+-|..||..+.. ++ |-+|||..|.|||-+++-+++..+.. |++|.|+|
T Consensus 579 ~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~--------GKQVAvLV 650 (1139)
T COG1197 579 PDTEWQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD--------GKQVAVLV 650 (1139)
T ss_pred CChHHHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC--------CCeEEEEc
Confidence 344455555443333679999999999873 33 78999999999999998888877654 79999999
Q ss_pred ccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHh----hCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecc
Q 010709 202 PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDE 277 (503)
Q Consensus 202 Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDE 277 (503)
||.-||+|.++.|++-+..+ ++++..+.-=...+++...+ .+..||+|+| +.+.+..+.+.+++++||||
T Consensus 651 PTTlLA~QHy~tFkeRF~~f-PV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT-----HrLL~kdv~FkdLGLlIIDE 724 (1139)
T COG1197 651 PTTLLAQQHYETFKERFAGF-PVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT-----HRLLSKDVKFKDLGLLIIDE 724 (1139)
T ss_pred ccHHhHHHHHHHHHHHhcCC-CeeEEEecccCCHHHHHHHHHHHhcCCccEEEec-----hHhhCCCcEEecCCeEEEec
Confidence 99999999999999988877 48888777666655554443 2569999999 44455688899999999999
Q ss_pred hhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHH
Q 010709 278 ADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLL 357 (503)
Q Consensus 278 aH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 357 (503)
-|+ |+..-.+-++.++.+.-++-|||||-+..-.+.-.-+++-..+... +.....+..++......--...+.
T Consensus 725 EqR-----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TP--P~~R~pV~T~V~~~d~~~ireAI~ 797 (1139)
T COG1197 725 EQR-----FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATP--PEDRLPVKTFVSEYDDLLIREAIL 797 (1139)
T ss_pred hhh-----cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCC--CCCCcceEEEEecCChHHHHHHHH
Confidence 998 5666677788888899999999999666555555555554444322 223334444444433332222322
Q ss_pred HHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHC--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccc
Q 010709 358 ALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVAS 435 (503)
Q Consensus 358 ~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~--~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 435 (503)
..+ ..+|++--.+|..+.++.+++.|+.. ..++...||.|+..+-++++..|.+|+.+|||||.+.+
T Consensus 798 REl-----------~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIE 866 (1139)
T COG1197 798 REL-----------LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIE 866 (1139)
T ss_pred HHH-----------hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeee
Confidence 222 24566888889999999999999987 56789999999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEccCCC-ChhHHHHhhCcceeee-------eec-------c-CchhhhhhHHHHHHHHHHHHHHHHhh
Q 010709 436 RGLDVMGVAHVVNLDLPK-VLLAASESLCTTSFNI-------TTN-------L-DGDMKKLEFCLILAITVLLFVIFLSI 499 (503)
Q Consensus 436 ~Gldip~v~~VI~~~~p~-s~~~~~Qr~GR~gR~~-------~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (503)
.|||||+++++|.-+.-+ -.++..|--||+||+- +.+ . ..+++.+..+..+...+.++|-.|.|
T Consensus 867 tGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k~lT~~A~kRL~aI~~~~~LGaGf~lA~~DLeI 946 (1139)
T COG1197 867 TGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAIASFTELGAGFKLAMHDLEI 946 (1139)
T ss_pred cCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCccccCHHHHHHHHHHHhhhhcCchHHHHhcchhc
Confidence 999999999999766543 4688999999999952 222 2 26677777777888888888888765
No 93
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=8.4e-30 Score=248.02 Aligned_cols=298 Identities=17% Similarity=0.168 Sum_probs=212.3
Q ss_pred cHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccC--C
Q 010709 145 TSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL--D 222 (503)
Q Consensus 145 ~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~--~ 222 (503)
...+.+.+..+..++.+||+|+||||||+ ++|.+.+...+. +++.+.+..|+|..|..+++++.+-+... .
T Consensus 358 f~~R~~ll~~ir~n~vvvivgETGSGKTT--Ql~QyL~edGY~-----~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~ 430 (1042)
T KOG0924|consen 358 FACRDQLLSVIRENQVVVIVGETGSGKTT--QLAQYLYEDGYA-----DNGMIGCTQPRRVAAISVAKRVAEEMGVTLGD 430 (1042)
T ss_pred HHHHHHHHHHHhhCcEEEEEecCCCCchh--hhHHHHHhcccc-----cCCeeeecCchHHHHHHHHHHHHHHhCCcccc
Confidence 34455566666678889999999999998 466666655542 34567788899999999998887655221 1
Q ss_pred CceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhH-HhhCCCHHHHHHHHHhCCCCC
Q 010709 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR-MLDMGFEPQIREVMQNLPDKH 301 (503)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~-l~~~~~~~~~~~il~~~~~~~ 301 (503)
.+-+.+.+.+... ..+.|-++|.|.|++.... .-.|.++++||+||||. -++.+..-.+.+.+..-+.+.
T Consensus 431 ~VGYsIRFEdvT~--------~~T~IkymTDGiLLrEsL~-d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdl 501 (1042)
T KOG0924|consen 431 TVGYSIRFEDVTS--------EDTKIKYMTDGILLRESLK-DRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDL 501 (1042)
T ss_pred ccceEEEeeecCC--------CceeEEEeccchHHHHHhh-hhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccc
Confidence 2444555555432 3478999999999988776 45688999999999994 333332333344444445689
Q ss_pred cEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEE
Q 010709 302 QTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFV 381 (503)
Q Consensus 302 q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~ 381 (503)
++|.+|||+ +.+.+...|-+.|.. .+.... ..+...+...+.+..+...+......+ ...+.|-+|||.
T Consensus 502 KliVtSATm--~a~kf~nfFgn~p~f-~IpGRT---yPV~~~~~k~p~eDYVeaavkq~v~Ih-----l~~~~GdilIfm 570 (1042)
T KOG0924|consen 502 KLIVTSATM--DAQKFSNFFGNCPQF-TIPGRT---YPVEIMYTKTPVEDYVEAAVKQAVQIH-----LSGPPGDILIFM 570 (1042)
T ss_pred eEEEeeccc--cHHHHHHHhCCCcee-eecCCc---cceEEEeccCchHHHHHHHHhhheEee-----ccCCCCCEEEec
Confidence 999999999 455554444334544 343333 334455555555555554444333222 224667899999
Q ss_pred cchhhHHHHH----HHHHHC------CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccC
Q 010709 382 ERKTRCDEVS----EALVAE------GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDL 451 (503)
Q Consensus 382 ~~~~~~~~l~----~~L~~~------~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~ 451 (503)
++++.++-.+ +.|.+. ++.|+++|+.+++.-|.++++....|..+|+|||++++++|+||++.+||+.+.
T Consensus 571 tGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy 650 (1042)
T KOG0924|consen 571 TGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGY 650 (1042)
T ss_pred CCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCc
Confidence 9988765544 444432 678999999999999999999999999999999999999999999999999885
Q ss_pred ------------------CCChhHHHHhhCcceeee
Q 010709 452 ------------------PKVLLAASESLCTTSFNI 469 (503)
Q Consensus 452 ------------------p~s~~~~~Qr~GR~gR~~ 469 (503)
|-|.++..||.|||||+.
T Consensus 651 ~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~ 686 (1042)
T KOG0924|consen 651 CKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG 686 (1042)
T ss_pred eeeeecccccccceeEEEechhccchhhccccCCCC
Confidence 445688999999999973
No 94
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=3.7e-29 Score=257.69 Aligned_cols=332 Identities=19% Similarity=0.227 Sum_probs=237.2
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCC-CeEEEccCCCchhHHhHHHHHHHHHhcCCCCCC---CCCeEEEEcc
Q 010709 127 CLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGR-DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG---DGPLALVLAP 202 (503)
Q Consensus 127 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~-~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~---~~~~~lil~P 202 (503)
.++.+-..++ .|...+..+|.....+.+.+. ++++|||||+|||..+++-+++.+-........ ...+++|++|
T Consensus 295 elP~Wnq~aF--~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAP 372 (1674)
T KOG0951|consen 295 ELPKWNQPAF--FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAP 372 (1674)
T ss_pred CCcchhhhhc--ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEee
Confidence 3444544443 466779999999999998765 699999999999999999999887665432222 3458999999
Q ss_pred cHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCC---CCCCccEEEecchh
Q 010709 203 TRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT---SLSRVSFVILDEAD 279 (503)
Q Consensus 203 tr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~---~l~~~~~vViDEaH 279 (503)
.++|++.|...|.+....+ ++.+.-++|+...... .-.++.|+|+||+.. +.+.++.. ..+-++++||||.|
T Consensus 373 mKaLvqE~VgsfSkRla~~-GI~V~ElTgD~~l~~~---qieeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIH 447 (1674)
T KOG0951|consen 373 MKALVQEMVGSFSKRLAPL-GITVLELTGDSQLGKE---QIEETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIH 447 (1674)
T ss_pred HHHHHHHHHHHHHhhcccc-CcEEEEecccccchhh---hhhcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhh
Confidence 9999999999998887776 5999999998764332 124589999999998 34444322 24457899999999
Q ss_pred HHhhCCCHHHHHHHHHhC-------CCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhH
Q 010709 280 RMLDMGFEPQIREVMQNL-------PDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEK 352 (503)
Q Consensus 280 ~l~~~~~~~~~~~il~~~-------~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 352 (503)
|+....++.++.+..+. ...++++++|||+|+- .+.......++.-+...........+.|.++.+.....
T Consensus 448 -LLhDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy-~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~ 525 (1674)
T KOG0951|consen 448 -LLHDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNY-EDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKP 525 (1674)
T ss_pred -hcccccchHHHHHHHHHHHHhhhcccCceeeeecccCCch-hhhHHHhccCcccccccCcccCcCCccceEeccccCCc
Confidence 55555777777665543 2368899999999754 33343333444444444444444556666666544332
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHH------------------------------------
Q 010709 353 VDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVA------------------------------------ 396 (503)
Q Consensus 353 ~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~------------------------------------ 396 (503)
... .+.+.+..+...-.....+++|||+.++++..+.|+.++.
T Consensus 526 ~~~-~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkd 604 (1674)
T KOG0951|consen 526 LKR-FQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKD 604 (1674)
T ss_pred hHH-HHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHH
Confidence 222 2222222222221112336799999999998888887763
Q ss_pred -CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEE-----ccC------CCChhHHHHhhCc
Q 010709 397 -EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN-----LDL------PKVLLAASESLCT 464 (503)
Q Consensus 397 -~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~-----~~~------p~s~~~~~Qr~GR 464 (503)
..+.+..+|+||+..+|..+.+.|++|.++|+|+|..+++|+|+|+ +.||. |++ +.++.+..||+||
T Consensus 605 LLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpa-htViikgtqvy~pekg~w~elsp~dv~qmlgr 683 (1674)
T KOG0951|consen 605 LLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPA-HTVIIKGTQVYDPEKGRWTELSPLDVMQMLGR 683 (1674)
T ss_pred HhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCc-ceEEecCccccCcccCccccCCHHHHHHHHhh
Confidence 1256889999999999999999999999999999999999999995 55554 444 3467899999999
Q ss_pred ceeee
Q 010709 465 TSFNI 469 (503)
Q Consensus 465 ~gR~~ 469 (503)
|||.-
T Consensus 684 agrp~ 688 (1674)
T KOG0951|consen 684 AGRPQ 688 (1674)
T ss_pred cCCCc
Confidence 99964
No 95
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=5.4e-30 Score=251.82 Aligned_cols=303 Identities=19% Similarity=0.188 Sum_probs=228.7
Q ss_pred CCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCC
Q 010709 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (503)
Q Consensus 143 ~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~ 222 (503)
.+.|+|..++.++-.+..|+|+|.|.+|||.++..++...+.. +.++||..|-++|.+|-++++..-++
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~--------kQRVIYTSPIKALSNQKYREl~~EF~--- 197 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE--------KQRVIYTSPIKALSNQKYRELLEEFK--- 197 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh--------cCeEEeeChhhhhcchhHHHHHHHhc---
Confidence 6889999999999999999999999999999987776666544 57899999999999999999886653
Q ss_pred CceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCc
Q 010709 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQ 302 (503)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q 302 (503)
.+++.+|+.. +...+..+|||.+.|..++.++.--++.+.+||+||+|.|-+...+..|++.+-.+|++.+
T Consensus 198 --DVGLMTGDVT-------InP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr 268 (1041)
T KOG0948|consen 198 --DVGLMTGDVT-------INPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVR 268 (1041)
T ss_pred --ccceeeccee-------eCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccce
Confidence 2566777764 3455789999999999999998888999999999999999999889999999999999999
Q ss_pred EEEEEeeCCHHHH--HHHHHhcCCCeEEEeCCCCCCCCceEEEE------------EEcCh---hhHHHHHHHHHHHHHH
Q 010709 303 TLLFSATMPVEIE--ALAQEYLTDPVQVKVGKVSSPTANVIQIL------------EKVSE---NEKVDRLLALLVEEAF 365 (503)
Q Consensus 303 ~i~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~---~~k~~~l~~~l~~~~~ 365 (503)
.+++|||+|+..+ +.+...-..|+.+...... +...|++ +..+. ++........+.....
T Consensus 269 ~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyR---PTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~ 345 (1041)
T KOG0948|consen 269 FVFLSATIPNARQFAEWICHIHKQPCHVVYTDYR---PTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGE 345 (1041)
T ss_pred EEEEeccCCCHHHHHHHHHHHhcCCceEEeecCC---CCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCC
Confidence 9999999987654 2334445667766433211 1111221 11111 1222222222222111
Q ss_pred hhh--------cc---------------------CCCCCcEEEEEcchhhHHHHHHHHHHCC------------------
Q 010709 366 LAE--------KS---------------------CHPFPLTIVFVERKTRCDEVSEALVAEG------------------ 398 (503)
Q Consensus 366 ~~~--------~~---------------------~~~~~~~lIF~~~~~~~~~l~~~L~~~~------------------ 398 (503)
... +. .....++|||+-++++|+.++-.+.+..
T Consensus 346 ~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi 425 (1041)
T KOG0948|consen 346 SDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAI 425 (1041)
T ss_pred CccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHH
Confidence 110 00 0123569999999999999998885522
Q ss_pred ---------------------CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCC----
Q 010709 399 ---------------------LHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPK---- 453 (503)
Q Consensus 399 ---------------------~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~---- 453 (503)
-.+..+|||+-+--++-+.-.|++|-++||+||..++.|+|+| +++|++...-+
T Consensus 426 ~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMP-AkTVvFT~~rKfDG~ 504 (1041)
T KOG0948|consen 426 DQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMP-AKTVVFTAVRKFDGK 504 (1041)
T ss_pred HhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCc-ceeEEEeeccccCCc
Confidence 2467899999999999999999999999999999999999999 56676654432
Q ss_pred -----ChhHHHHhhCcceeee
Q 010709 454 -----VLLAASESLCTTSFNI 469 (503)
Q Consensus 454 -----s~~~~~Qr~GR~gR~~ 469 (503)
+.-+|+|+.|||||--
T Consensus 505 ~fRwissGEYIQMSGRAGRRG 525 (1041)
T KOG0948|consen 505 KFRWISSGEYIQMSGRAGRRG 525 (1041)
T ss_pred ceeeecccceEEecccccccC
Confidence 4578999999999953
No 96
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=2.7e-28 Score=247.04 Aligned_cols=277 Identities=20% Similarity=0.231 Sum_probs=185.6
Q ss_pred EEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHH--
Q 010709 162 LGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR-- 239 (503)
Q Consensus 162 ii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 239 (503)
++.|+||+|||.+|+.. +...+.. ++++||++|+++|+.|+++.+++.+ +..+..++++....+..
T Consensus 1 LL~g~TGsGKT~v~l~~-i~~~l~~-------g~~vLvlvP~i~L~~Q~~~~l~~~f----~~~v~vlhs~~~~~er~~~ 68 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQA-IEKVLAL-------GKSVLVLVPEIALTPQMIQRFKYRF----GSQVAVLHSGLSDSEKLQA 68 (505)
T ss_pred CccCCCCCCHHHHHHHH-HHHHHHc-------CCeEEEEeCcHHHHHHHHHHHHHHh----CCcEEEEECCCCHHHHHHH
Confidence 47899999999998554 4444443 5789999999999999999998865 34577788877654432
Q ss_pred -HH-hhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCC-----C-HHHHHHHHHhCCCCCcEEEEEeeCC
Q 010709 240 -SE-LRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-----F-EPQIREVMQNLPDKHQTLLFSATMP 311 (503)
Q Consensus 240 -~~-~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~-----~-~~~~~~il~~~~~~~q~i~~SAT~~ 311 (503)
.. ..+..+|+|+|+..+. ..+.++++|||||+|....++ | ...+.. +.....+.++|++|||+.
T Consensus 69 ~~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~-~ra~~~~~~vil~SATPs 140 (505)
T TIGR00595 69 WRKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAV-YRAKKFNCPVVLGSATPS 140 (505)
T ss_pred HHHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHH-HHHHhcCCCEEEEeCCCC
Confidence 22 2346899999998764 347789999999999765332 1 112222 233335678999999986
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhh----HHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhh-
Q 010709 312 VEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENE----KVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTR- 386 (503)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~- 386 (503)
.+....+. .+....+...............+....... -...++..+.+... .++++|||+|++..
T Consensus 141 les~~~~~--~g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~-------~g~qvLvflnrrGya 211 (505)
T TIGR00595 141 LESYHNAK--QKAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLA-------AGEQSILFLNRRGYS 211 (505)
T ss_pred HHHHHHHh--cCCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHH-------cCCcEEEEEeCCcCC
Confidence 55443332 122222222211111111122222222211 11234444444332 23459999887653
Q ss_pred -----------------------------------------------------------HHHHHHHHHHC--CCeEEEEc
Q 010709 387 -----------------------------------------------------------CDEVSEALVAE--GLHAVALH 405 (503)
Q Consensus 387 -----------------------------------------------------------~~~l~~~L~~~--~~~v~~lh 405 (503)
.+.+++.|.+. +.++..+|
T Consensus 212 ~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d 291 (505)
T TIGR00595 212 KNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARID 291 (505)
T ss_pred CeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEe
Confidence 37778888776 77899999
Q ss_pred CCCCHHHH--HHHHHHHhcCCCcEEEEccccccCCCCCCCCEEE--EccC----CC------ChhHHHHhhCccee
Q 010709 406 GGRNQSDR--ESALRDFRNGSTNILVATDVASRGLDVMGVAHVV--NLDL----PK------VLLAASESLCTTSF 467 (503)
Q Consensus 406 ~~~~~~~r--~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI--~~~~----p~------s~~~~~Qr~GR~gR 467 (503)
+++++.++ .++++.|++|+.+|||+|+++++|+|+|+|++|+ ++|. |. ....|.|++||+||
T Consensus 292 ~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR 367 (505)
T TIGR00595 292 SDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGR 367 (505)
T ss_pred cccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCC
Confidence 99987765 8999999999999999999999999999999985 5554 31 24678999999998
No 97
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.7e-28 Score=256.48 Aligned_cols=313 Identities=20% Similarity=0.240 Sum_probs=226.5
Q ss_pred HHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q 010709 137 EFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (503)
Q Consensus 137 ~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 216 (503)
..++| .|.++|++++-.+..|..|++|||||+|||.+...++...+.. +.+++|++|.++|.+|.++.+..
T Consensus 114 ~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~--------~qrviYTsPIKALsNQKyrdl~~ 184 (1041)
T COG4581 114 REYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD--------GQRVIYTSPIKALSNQKYRDLLA 184 (1041)
T ss_pred HhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc--------CCceEeccchhhhhhhHHHHHHH
Confidence 34455 6899999999999999999999999999999886665554433 56799999999999999999986
Q ss_pred HhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHh
Q 010709 217 LSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN 296 (503)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~ 296 (503)
..... .-.+++++|+.. +..++.++|||.+.|.+++.++...+..+.+||+||+|.+.+...+..|+.++..
T Consensus 185 ~fgdv-~~~vGL~TGDv~-------IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~ 256 (1041)
T COG4581 185 KFGDV-ADMVGLMTGDVS-------INPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIIL 256 (1041)
T ss_pred Hhhhh-hhhccceeccee-------eCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHh
Confidence 65322 123567777764 4567899999999999999998888999999999999999999999999999999
Q ss_pred CCCCCcEEEEEeeCCHHHH--HHHHHhcCCCeEEEeCCCCCCCCceEEEEEE------cChhhH-----HHHHHHHHH--
Q 010709 297 LPDKHQTLLFSATMPVEIE--ALAQEYLTDPVQVKVGKVSSPTANVIQILEK------VSENEK-----VDRLLALLV-- 361 (503)
Q Consensus 297 ~~~~~q~i~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~k-----~~~l~~~l~-- 361 (503)
++...++|++|||+|+..+ ..+...-..|..+.... ..+.+.....+.. +....+ .......+.
T Consensus 257 lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~-~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~ 335 (1041)
T COG4581 257 LPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTE-HRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCF 335 (1041)
T ss_pred cCCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeec-CCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhcc
Confidence 9999999999999976543 33333334444443221 1111111111111 111110 000000000
Q ss_pred -HHHHhhh------------------------------ccCCCCCcEEEEEcchhhHHHHHHHHHH--------------
Q 010709 362 -EEAFLAE------------------------------KSCHPFPLTIVFVERKTRCDEVSEALVA-------------- 396 (503)
Q Consensus 362 -~~~~~~~------------------------------~~~~~~~~~lIF~~~~~~~~~l~~~L~~-------------- 396 (503)
....... .......++|+|+-++..|+..+..+..
T Consensus 336 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~ 415 (1041)
T COG4581 336 SEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIR 415 (1041)
T ss_pred chhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHH
Confidence 0000000 0001224699999999999888877742
Q ss_pred --------------CCC-------------eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEc
Q 010709 397 --------------EGL-------------HAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNL 449 (503)
Q Consensus 397 --------------~~~-------------~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~ 449 (503)
.++ .+..+|+||-+..+..+...|..|-++|++||..++.|+|+| +++|++.
T Consensus 416 ~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmP-artvv~~ 494 (1041)
T COG4581 416 EIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMP-ARTVVFT 494 (1041)
T ss_pred HHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCc-ccceeee
Confidence 011 245799999999999999999999999999999999999999 6777776
Q ss_pred cCC---------CChhHHHHhhCcceee
Q 010709 450 DLP---------KVLLAASESLCTTSFN 468 (503)
Q Consensus 450 ~~p---------~s~~~~~Qr~GR~gR~ 468 (503)
.+. -+..+|.|..|||||-
T Consensus 495 ~l~K~dG~~~r~L~~gEy~QmsGRAGRR 522 (1041)
T COG4581 495 SLSKFDGNGHRWLSPGEYTQMSGRAGRR 522 (1041)
T ss_pred eeEEecCCceeecChhHHHHhhhhhccc
Confidence 654 3678999999999995
No 98
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.96 E-value=1.2e-27 Score=259.93 Aligned_cols=307 Identities=18% Similarity=0.223 Sum_probs=199.5
Q ss_pred CCCcHHHHHHHHHHh----cC-CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q 010709 142 TRPTSIQAQAMPVAL----SG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (503)
Q Consensus 142 ~~~~~~Q~~~i~~i~----~~-~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 216 (503)
..++++|.+|+..+. +| +.++++++||+|||.++ +.++..++... ..+++|||+|+++|+.|+.+.|+.
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~ta-i~li~~L~~~~-----~~~rVLfLvDR~~L~~Qa~~~F~~ 485 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTA-IALMYRLLKAK-----RFRRILFLVDRSALGEQAEDAFKD 485 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHH-HHHHHHHHhcC-----ccCeEEEEecHHHHHHHHHHHHHh
Confidence 358999999998775 33 56999999999999875 44555544431 246899999999999999999988
Q ss_pred HhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcC-----CCCCCCccEEEecchhHHhhC-------
Q 010709 217 LSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG-----NTSLSRVSFVILDEADRMLDM------- 284 (503)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-----~~~l~~~~~vViDEaH~l~~~------- 284 (503)
+.... ......+++.....+. .......|+|+|.+.+.+.+... .+.+..+++|||||||+....
T Consensus 486 ~~~~~-~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~ 562 (1123)
T PRK11448 486 TKIEG-DQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEG 562 (1123)
T ss_pred ccccc-ccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccc
Confidence 74221 1111111111111111 11245799999999997765432 245678999999999985310
Q ss_pred --------CCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeE---------------------EEeC--CC
Q 010709 285 --------GFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQ---------------------VKVG--KV 333 (503)
Q Consensus 285 --------~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~---------------------~~~~--~~ 333 (503)
.+...+++++.++. ...|+|||||..... .+++.|+. +... ..
T Consensus 563 ~~~~~~~~~~~~~yr~iL~yFd--A~~IGLTATP~r~t~----~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~ 636 (1123)
T PRK11448 563 ELQFRDQLDYVSKYRRVLDYFD--AVKIGLTATPALHTT----EIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQE 636 (1123)
T ss_pred hhccchhhhHHHHHHHHHhhcC--ccEEEEecCCccchh----HHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccc
Confidence 12467888888774 357999999964432 22333321 1110 00
Q ss_pred CC--CCCc-e---EE---EE--EEcChh---------------hHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhH
Q 010709 334 SS--PTAN-V---IQ---IL--EKVSEN---------------EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRC 387 (503)
Q Consensus 334 ~~--~~~~-~---~~---~~--~~~~~~---------------~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~ 387 (503)
+. .... + .. .+ ...+.. .....++..+.+.. .. ..++|+||||.++.+|
T Consensus 637 gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l----~~-~~~~KtiIF~~s~~HA 711 (1123)
T PRK11448 637 GIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYL----DP-TGEGKTLIFAATDAHA 711 (1123)
T ss_pred cccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHH----hc-cCCCcEEEEEcCHHHH
Confidence 00 0000 0 00 00 000000 00011111121111 11 1237899999999999
Q ss_pred HHHHHHHHHC------CC---eEEEEcCCCCHHHHHHHHHHHhcCCC-cEEEEccccccCCCCCCCCEEEEccCCCChhH
Q 010709 388 DEVSEALVAE------GL---HAVALHGGRNQSDRESALRDFRNGST-NILVATDVASRGLDVMGVAHVVNLDLPKVLLA 457 (503)
Q Consensus 388 ~~l~~~L~~~------~~---~v~~lh~~~~~~~r~~~~~~f~~g~~-~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~ 457 (503)
+.+++.|.+. ++ .+..++|+.+ ++..+++.|+++.. .|+|+++++.+|+|+|.|.+||++++++|...
T Consensus 712 ~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~l 789 (1123)
T PRK11448 712 DMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRIL 789 (1123)
T ss_pred HHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHH
Confidence 9999887653 22 4567888876 46789999999886 69999999999999999999999999999999
Q ss_pred HHHhhCcceeeee
Q 010709 458 ASESLCTTSFNIT 470 (503)
Q Consensus 458 ~~Qr~GR~gR~~~ 470 (503)
|.||+||+.|...
T Consensus 790 f~QmIGRgtR~~~ 802 (1123)
T PRK11448 790 YEQMLGRATRLCP 802 (1123)
T ss_pred HHHHHhhhccCCc
Confidence 9999999999653
No 99
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=3.9e-27 Score=243.69 Aligned_cols=301 Identities=19% Similarity=0.199 Sum_probs=218.7
Q ss_pred CCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCC
Q 010709 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (503)
Q Consensus 143 ~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~ 222 (503)
.|+++|.-.--.+.+| -|..++||+|||++|.+|++...+. +..++|++||++||.|.++.+..+...+
T Consensus 82 ~~ydvQliGg~~Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~--------G~~V~VvTpn~yLA~qd~e~m~~l~~~l- 150 (896)
T PRK13104 82 RHFDVQLIGGMVLHEG--NIAEMRTGEGKTLVATLPAYLNAIS--------GRGVHIVTVNDYLAKRDSQWMKPIYEFL- 150 (896)
T ss_pred CcchHHHhhhhhhccC--ccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEcCCHHHHHHHHHHHHHHhccc-
Confidence 6788887766666555 4789999999999999999977654 4569999999999999999999999877
Q ss_pred CceEEEEECCccHHHHHHHhhCCCcEEEECcHHH-HHHHHcC-CCCC-----CCccEEEecchhHHh-hCC---------
Q 010709 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQG-NTSL-----SRVSFVILDEADRML-DMG--------- 285 (503)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~-~~~l-----~~~~~vViDEaH~l~-~~~--------- 285 (503)
++.+.+++|+......... ..++|+|+||++| .+++..+ .+.+ ..+.++||||||.++ +..
T Consensus 151 GLtv~~i~gg~~~~~r~~~--y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~ 228 (896)
T PRK13104 151 GLTVGVIYPDMSHKEKQEA--YKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGA 228 (896)
T ss_pred CceEEEEeCCCCHHHHHHH--hCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCC
Confidence 5999999999877665433 3689999999999 8888765 2333 589999999999733 100
Q ss_pred ------CHHHHHHHHHhCCC--------------C---------------------------------------------
Q 010709 286 ------FEPQIREVMQNLPD--------------K--------------------------------------------- 300 (503)
Q Consensus 286 ------~~~~~~~il~~~~~--------------~--------------------------------------------- 300 (503)
.......++..+.. +
T Consensus 229 ~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~a 308 (896)
T PRK13104 229 AEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAA 308 (896)
T ss_pred CccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHH
Confidence 00000011110000 0
Q ss_pred -----------------------------------------------------------------------CcEEEEEee
Q 010709 301 -----------------------------------------------------------------------HQTLLFSAT 309 (503)
Q Consensus 301 -----------------------------------------------------------------------~q~i~~SAT 309 (503)
.++-+||+|
T Consensus 309 L~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGT 388 (896)
T PRK13104 309 LKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGT 388 (896)
T ss_pred HHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCC
Confidence 134456666
Q ss_pred CCHHHHHHHHHhcCCCeEEEeCCCCCCCC-ceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHH
Q 010709 310 MPVEIEALAQEYLTDPVQVKVGKVSSPTA-NVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCD 388 (503)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~ 388 (503)
...+-.++.+-|-- .+.+.. ...+.. ....-.+......|...+...+...+. .+.|+||||++++.++
T Consensus 389 a~te~~Ef~~iY~l-~Vv~IP--tnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~-------~g~PVLVgt~Sie~sE 458 (896)
T PRK13104 389 ADTEAYEFQQIYNL-EVVVIP--TNRSMIRKDEADLVYLTQADKFQAIIEDVRECGV-------RKQPVLVGTVSIEASE 458 (896)
T ss_pred ChhHHHHHHHHhCC-CEEECC--CCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHh-------CCCCEEEEeCcHHHHH
Confidence 54444444333322 222211 111111 112223455667788888877765543 3457999999999999
Q ss_pred HHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCC--------------------------
Q 010709 389 EVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMG-------------------------- 442 (503)
Q Consensus 389 ~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~-------------------------- 442 (503)
.+++.|.+.|+.+..+|+.+.+.++..+.+.|+.| .|+|||++++||+||.=
T Consensus 459 ~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G--~VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~ 536 (896)
T PRK13104 459 FLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG--AVTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKE 536 (896)
T ss_pred HHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC--cEEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHH
Confidence 99999999999999999999999999999999999 49999999999999871
Q ss_pred ------------CCEEEEccCCCChhHHHHhhCcceee
Q 010709 443 ------------VAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 443 ------------v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
==+||-...+.|..-=.|-.||+||.
T Consensus 537 ~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQ 574 (896)
T PRK13104 537 WQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQ 574 (896)
T ss_pred hhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccC
Confidence 12788888999988888999999985
No 100
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.96 E-value=1.1e-27 Score=247.77 Aligned_cols=307 Identities=17% Similarity=0.178 Sum_probs=216.9
Q ss_pred CCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCC
Q 010709 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (503)
Q Consensus 143 ~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~ 222 (503)
..+..+.+.+.++.+++.++|+|+||+|||++....++......+ ...++++..|+|--|..+++++..--....
T Consensus 173 Pa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~-----~~~~IicTQPRRIsAIsvAeRVa~ER~~~~ 247 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG-----AACNIICTQPRRISAISVAERVAKERGESL 247 (924)
T ss_pred ccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC-----CCCeEEecCCchHHHHHHHHHHHHHhcccc
Confidence 346667778888888899999999999999976555666655543 456688889999999989988875442222
Q ss_pred CceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchh-HHhhCCCHHHHHHHHHhCCCCC
Q 010709 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD-RMLDMGFEPQIREVMQNLPDKH 301 (503)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH-~l~~~~~~~~~~~il~~~~~~~ 301 (503)
+-.++.-..... .....+.+++||.|.|++.+.. ...+..++.||+||+| +-++.+|.-.+.+.+-..+++.
T Consensus 248 g~~VGYqvrl~~------~~s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~L 320 (924)
T KOG0920|consen 248 GEEVGYQVRLES------KRSRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDL 320 (924)
T ss_pred CCeeeEEEeeec------ccCCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCc
Confidence 222222111111 1223489999999999999987 5678899999999999 4455667777777777777999
Q ss_pred cEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCc----------------eEEE------------EEEcChhhHH
Q 010709 302 QTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTAN----------------VIQI------------LEKVSENEKV 353 (503)
Q Consensus 302 q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~------------~~~~~~~~k~ 353 (503)
++|+||||+..+ ....|++....+++.....+... ..+. ......+-.
T Consensus 321 kvILMSAT~dae---~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id- 396 (924)
T KOG0920|consen 321 KVILMSATLDAE---LFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEID- 396 (924)
T ss_pred eEEEeeeecchH---HHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhcccccc-
Confidence 999999999632 45556655444444332221100 0000 000001111
Q ss_pred HHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHC-------CCeEEEEcCCCCHHHHHHHHHHHhcCCCc
Q 010709 354 DRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-------GLHAVALHGGRNQSDRESALRDFRNGSTN 426 (503)
Q Consensus 354 ~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~-------~~~v~~lh~~~~~~~r~~~~~~f~~g~~~ 426 (503)
..++..+..+.... ...+.+|||.++..++..+.+.|... .+-+.++|+.++..++..+++....|..+
T Consensus 397 ~~Li~~li~~I~~~----~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RK 472 (924)
T KOG0920|consen 397 YDLIEDLIEYIDER----EFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRK 472 (924)
T ss_pred HHHHHHHHHhcccC----CCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcch
Confidence 12222222222221 45678999999999999999999652 36788999999999999999999999999
Q ss_pred EEEEccccccCCCCCCCCEEEEccCCC------------------ChhHHHHhhCcceeee
Q 010709 427 ILVATDVASRGLDVMGVAHVVNLDLPK------------------VLLAASESLCTTSFNI 469 (503)
Q Consensus 427 vLvaT~~~~~Gldip~v~~VI~~~~p~------------------s~~~~~Qr~GR~gR~~ 469 (503)
||+||++++++|+|++|-+||+.+.-+ +.++..||.|||||..
T Consensus 473 IIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~ 533 (924)
T KOG0920|consen 473 IILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVR 533 (924)
T ss_pred hhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCcc
Confidence 999999999999999999999977643 3388899999999953
No 101
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=1.2e-26 Score=240.09 Aligned_cols=302 Identities=20% Similarity=0.236 Sum_probs=222.9
Q ss_pred CCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccC
Q 010709 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (503)
Q Consensus 142 ~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~ 221 (503)
..|++.|.-..-.+.+|+ |..++||+|||+++.+|++...+. |..+-|++|+..||.|.++.+..+...+
T Consensus 80 ~~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~IvTpn~yLA~rd~e~~~~l~~~L 149 (830)
T PRK12904 80 MRHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALT--------GKGVHVVTVNDYLAKRDAEWMGPLYEFL 149 (830)
T ss_pred CCCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc--------CCCEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 378899988887776664 889999999999999999754443 3457899999999999999999999877
Q ss_pred CCceEEEEECCccHHHHHHHhhCCCcEEEECcHHH-HHHHHcCC------CCCCCccEEEecchhHHh-hCC--------
Q 010709 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGN------TSLSRVSFVILDEADRML-DMG-------- 285 (503)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~~------~~l~~~~~vViDEaH~l~-~~~-------- 285 (503)
+++++++.|+....+..... .++|+++|++.| .+++..+. ..+..+.++||||||.++ +..
T Consensus 150 -Glsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg 226 (830)
T PRK12904 150 -GLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISG 226 (830)
T ss_pred -CCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeEC
Confidence 69999999998877655543 489999999999 88887643 236789999999999733 100
Q ss_pred -------CHHHHHHHHHhCCC-----------------------------------------------------------
Q 010709 286 -------FEPQIREVMQNLPD----------------------------------------------------------- 299 (503)
Q Consensus 286 -------~~~~~~~il~~~~~----------------------------------------------------------- 299 (503)
....+..+...+..
T Consensus 227 ~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~d 306 (830)
T PRK12904 227 PAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVD 306 (830)
T ss_pred CCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCc
Confidence 00111111111100
Q ss_pred ----------------------------------------------------------CCcEEEEEeeCCHHHHHHHHHh
Q 010709 300 ----------------------------------------------------------KHQTLLFSATMPVEIEALAQEY 321 (503)
Q Consensus 300 ----------------------------------------------------------~~q~i~~SAT~~~~~~~~~~~~ 321 (503)
-.++.+||+|...+-..+.+-|
T Consensus 307 YiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY 386 (830)
T PRK12904 307 YIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIY 386 (830)
T ss_pred EEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHh
Confidence 0146678888765555544444
Q ss_pred cCCCeEEEeCCCCCCCCce-EEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCe
Q 010709 322 LTDPVQVKVGKVSSPTANV-IQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLH 400 (503)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~ 400 (503)
--+ +..... ..+.... ..-........|...+...+.+... ...++||||++++.++.+++.|.+.|+.
T Consensus 387 ~l~-vv~IPt--nkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~-------~grpVLIft~Si~~se~Ls~~L~~~gi~ 456 (830)
T PRK12904 387 NLD-VVVIPT--NRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHK-------KGQPVLVGTVSIEKSELLSKLLKKAGIP 456 (830)
T ss_pred CCC-EEEcCC--CCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHh-------cCCCEEEEeCcHHHHHHHHHHHHHCCCc
Confidence 332 222111 1111111 1223444666788888877765432 2346999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCC-------------------------------------
Q 010709 401 AVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGV------------------------------------- 443 (503)
Q Consensus 401 v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v------------------------------------- 443 (503)
+..+|+. +.+|...+..|+.+...|+|||++++||+||+-=
T Consensus 457 ~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G 534 (830)
T PRK12904 457 HNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAG 534 (830)
T ss_pred eEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcC
Confidence 9999995 7899999999999999999999999999999832
Q ss_pred -CEEEEccCCCChhHHHHhhCcceee
Q 010709 444 -AHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 444 -~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
=|||-...|.|..--.|-.||+||.
T Consensus 535 GLhVigTerhesrRid~QlrGRagRQ 560 (830)
T PRK12904 535 GLHVIGTERHESRRIDNQLRGRSGRQ 560 (830)
T ss_pred CCEEEecccCchHHHHHHhhcccccC
Confidence 2789999999998889999999995
No 102
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.95 E-value=9.7e-26 Score=203.99 Aligned_cols=295 Identities=17% Similarity=0.162 Sum_probs=207.3
Q ss_pred CCcHHHHHHHHHHh----cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q 010709 143 RPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (503)
Q Consensus 143 ~~~~~Q~~~i~~i~----~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 218 (503)
++++.|+.+-..+. +.++.+|.|-||+|||... .+.+...+++ |.++.+..|+...+..++.++++-+
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMi-f~~i~~al~~-------G~~vciASPRvDVclEl~~Rlk~aF 168 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMI-FQGIEQALNQ-------GGRVCIASPRVDVCLELYPRLKQAF 168 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhh-HHHHHHHHhc-------CCeEEEecCcccchHHHHHHHHHhh
Confidence 67888988776654 5678999999999999854 6667777765 7889999999999999999998766
Q ss_pred ccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhCC
Q 010709 219 RSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP 298 (503)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~ 298 (503)
. +..+.+++|+..... ...++|+|...|++... .++++||||+|.+--..-......+-+..+
T Consensus 169 ~---~~~I~~Lyg~S~~~f-------r~plvVaTtHQLlrFk~-------aFD~liIDEVDAFP~~~d~~L~~Av~~ark 231 (441)
T COG4098 169 S---NCDIDLLYGDSDSYF-------RAPLVVATTHQLLRFKQ-------AFDLLIIDEVDAFPFSDDQSLQYAVKKARK 231 (441)
T ss_pred c---cCCeeeEecCCchhc-------cccEEEEehHHHHHHHh-------hccEEEEeccccccccCCHHHHHHHHHhhc
Confidence 4 356888998875432 27899999998887664 478999999996432221222233334445
Q ss_pred CCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHH-------HHHHHHHHHHHhhhccC
Q 010709 299 DKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVD-------RLLALLVEEAFLAEKSC 371 (503)
Q Consensus 299 ~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~-------~l~~~l~~~~~~~~~~~ 371 (503)
+..-+|.+|||+++.++.-+..- +-..+.+.......+.+.-.+..+....|.- .+...+..+.
T Consensus 232 ~~g~~IylTATp~k~l~r~~~~g--~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~------- 302 (441)
T COG4098 232 KEGATIYLTATPTKKLERKILKG--NLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQR------- 302 (441)
T ss_pred ccCceEEEecCChHHHHHHhhhC--CeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHH-------
Confidence 55668999999998877654432 2222222222222222222223333222221 3334443332
Q ss_pred CCCCcEEEEEcchhhHHHHHHHHHHC--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEc
Q 010709 372 HPFPLTIVFVERKTRCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNL 449 (503)
Q Consensus 372 ~~~~~~lIF~~~~~~~~~l~~~L~~~--~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~ 449 (503)
....+++||+++.+..++++..|++. ...+...|+.. ..|.+..+.|++|+..+||+|.+++||+++|+|++.|.-
T Consensus 303 ~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlg 380 (441)
T COG4098 303 KTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLG 380 (441)
T ss_pred hcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEec
Confidence 23457999999999999999999554 34567888865 478899999999999999999999999999999986653
Q ss_pred cCC--CChhHHHHhhCcceeeeeecc
Q 010709 450 DLP--KVLLAASESLCTTSFNITTNL 473 (503)
Q Consensus 450 ~~p--~s~~~~~Qr~GR~gR~~~~~~ 473 (503)
.-- -+-+..+|..||+||++.-++
T Consensus 381 aeh~vfTesaLVQIaGRvGRs~~~Pt 406 (441)
T COG4098 381 AEHRVFTESALVQIAGRVGRSLERPT 406 (441)
T ss_pred CCcccccHHHHHHHhhhccCCCcCCC
Confidence 332 456889999999999875554
No 103
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=5e-26 Score=234.42 Aligned_cols=302 Identities=19% Similarity=0.221 Sum_probs=217.3
Q ss_pred CCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccC
Q 010709 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (503)
Q Consensus 142 ~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~ 221 (503)
..|++.|.-+.-.+.+|+ |..+.||+|||+++.+|++...+. |..+-+++|+..||.|-++.+..+...+
T Consensus 79 ~~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~--------G~~v~vvT~neyLA~Rd~e~~~~~~~~L 148 (796)
T PRK12906 79 LRPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT--------GKGVHVVTVNEYLSSRDATEMGELYRWL 148 (796)
T ss_pred CCCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc--------CCCeEEEeccHHHHHhhHHHHHHHHHhc
Confidence 478999998887777765 899999999999999888877665 6779999999999999999999999887
Q ss_pred CCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHH-HHHHcC------CCCCCCccEEEecchhHHh-h----------
Q 010709 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFL-DHLQQG------NTSLSRVSFVILDEADRML-D---------- 283 (503)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~-~~l~~~------~~~l~~~~~vViDEaH~l~-~---------- 283 (503)
++.++++.++....+.. ....++|+++|...|. +.+..+ ....+.+.+.||||+|.++ +
T Consensus 149 -Gl~vg~i~~~~~~~~r~--~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg 225 (796)
T PRK12906 149 -GLTVGLNLNSMSPDEKR--AAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISG 225 (796)
T ss_pred -CCeEEEeCCCCCHHHHH--HHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCC
Confidence 59999998877665543 3346899999998773 333221 1224568899999999622 1
Q ss_pred CC-----CHHHHHHHHHhCC------------------------------------------------------------
Q 010709 284 MG-----FEPQIREVMQNLP------------------------------------------------------------ 298 (503)
Q Consensus 284 ~~-----~~~~~~~il~~~~------------------------------------------------------------ 298 (503)
.. ....+.++...+.
T Consensus 226 ~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al 305 (796)
T PRK12906 226 QAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQAL 305 (796)
T ss_pred CCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHH
Confidence 00 0000011110000
Q ss_pred -------CC-------------------------------------------------------------CcEEEEEeeC
Q 010709 299 -------DK-------------------------------------------------------------HQTLLFSATM 310 (503)
Q Consensus 299 -------~~-------------------------------------------------------------~q~i~~SAT~ 310 (503)
.+ .++.+||+|.
T Consensus 306 ~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa 385 (796)
T PRK12906 306 RANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTA 385 (796)
T ss_pred HHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCC
Confidence 00 1456777777
Q ss_pred CHHHHHHHHHhcCCCeEEEeCCCCCCCC-ceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHH
Q 010709 311 PVEIEALAQEYLTDPVQVKVGKVSSPTA-NVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDE 389 (503)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~ 389 (503)
..+-..+.+-| +-++.. +.. ..+.. ....-........|...+...+..... ...++||||++++.++.
T Consensus 386 ~~e~~Ef~~iY-~l~vv~-IPt-nkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~-------~g~pvLI~t~si~~se~ 455 (796)
T PRK12906 386 KTEEEEFREIY-NMEVIT-IPT-NRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHA-------KGQPVLVGTVAIESSER 455 (796)
T ss_pred HHHHHHHHHHh-CCCEEE-cCC-CCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHh-------CCCCEEEEeCcHHHHHH
Confidence 55544444433 322222 111 11111 111223344556788888877765432 34579999999999999
Q ss_pred HHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCC---CCC-----EEEEccCCCChhHHHHh
Q 010709 390 VSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVM---GVA-----HVVNLDLPKVLLAASES 461 (503)
Q Consensus 390 l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip---~v~-----~VI~~~~p~s~~~~~Qr 461 (503)
+++.|.+.|+.+..+|+++.+.++..+.+.++.|. |+|||++++||.||+ +|. +||++++|.+...+.||
T Consensus 456 ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql 533 (796)
T PRK12906 456 LSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQL 533 (796)
T ss_pred HHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHH
Confidence 99999999999999999999888888888777775 999999999999995 899 99999999999999999
Q ss_pred hCcceee
Q 010709 462 LCTTSFN 468 (503)
Q Consensus 462 ~GR~gR~ 468 (503)
+||+||.
T Consensus 534 ~GRtGRq 540 (796)
T PRK12906 534 RGRSGRQ 540 (796)
T ss_pred hhhhccC
Confidence 9999994
No 104
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.95 E-value=3.9e-26 Score=200.95 Aligned_cols=165 Identities=31% Similarity=0.569 Sum_probs=140.7
Q ss_pred cHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCc
Q 010709 145 TSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSF 224 (503)
Q Consensus 145 ~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~ 224 (503)
||+|.++++.+..|+++++.||||+|||++|+++++..+... ...++++++|+++|+.|+.+.+.+++.. .++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~------~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~~ 73 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG------KDARVLIIVPTRALAEQQFERLRKFFSN-TNV 73 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT------SSSEEEEEESSHHHHHHHHHHHHHHTTT-TTS
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC------CCceEEEEeecccccccccccccccccc-ccc
Confidence 689999999999999999999999999999999999877663 1348999999999999999999999866 357
Q ss_pred eEEEEECCccHH-HHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhCC--CCC
Q 010709 225 KTAIVVGGTNIA-EQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP--DKH 301 (503)
Q Consensus 225 ~~~~~~~~~~~~-~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~--~~~ 301 (503)
.+..++++.... +....+..+++|+|+||++|.+.+......+.++++||+||+|.+....+...+..++..+. .+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~ 153 (169)
T PF00270_consen 74 RVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNI 153 (169)
T ss_dssp SEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTS
T ss_pred ccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCC
Confidence 888888888755 44455566799999999999999988655677799999999999998888888988888873 368
Q ss_pred cEEEEEeeCCHHHHH
Q 010709 302 QTLLFSATMPVEIEA 316 (503)
Q Consensus 302 q~i~~SAT~~~~~~~ 316 (503)
|++++|||++.++++
T Consensus 154 ~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 154 QIILLSATLPSNVEK 168 (169)
T ss_dssp EEEEEESSSTHHHHH
T ss_pred cEEEEeeCCChhHhh
Confidence 999999999976654
No 105
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.95 E-value=1.3e-25 Score=239.53 Aligned_cols=304 Identities=16% Similarity=0.195 Sum_probs=206.0
Q ss_pred CCcHHHHHHHHHHh----cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q 010709 143 RPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (503)
Q Consensus 143 ~~~~~Q~~~i~~i~----~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 218 (503)
.++++|.+++.+++ +|.++|++.++|.|||++. +.++.++.... +..+.+|||||. .+..||.+++.+++
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQa-IalL~~L~~~~----~~~gp~LIVvP~-SlL~nW~~Ei~kw~ 242 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQT-ISLLGYLHEYR----GITGPHMVVAPK-STLGNWMNEIRRFC 242 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHH-HHHHHHHHHhc----CCCCCEEEEeCh-HHHHHHHHHHHHHC
Confidence 68999999999986 5678999999999999986 44555544321 123458999998 45677999999987
Q ss_pred ccCCCceEEEEECCccHHHHHHH---hhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHH
Q 010709 219 RSLDSFKTAIVVGGTNIAEQRSE---LRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ 295 (503)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~ 295 (503)
. .+.+..++|.......... .....+|+|+|++.+..... .+.-..+++|||||||++-+. ...+.+.+.
T Consensus 243 p---~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~--~Sklskalr 315 (1033)
T PLN03142 243 P---VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNE--NSLLSKTMR 315 (1033)
T ss_pred C---CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCH--HHHHHHHHH
Confidence 4 3566666665543322111 12468999999999876443 233346889999999998654 444566666
Q ss_pred hCCCCCcEEEEEeeCCH-HHHHHH---H--------------HhcC------------------CCeEEEeCC----CCC
Q 010709 296 NLPDKHQTLLFSATMPV-EIEALA---Q--------------EYLT------------------DPVQVKVGK----VSS 335 (503)
Q Consensus 296 ~~~~~~q~i~~SAT~~~-~~~~~~---~--------------~~~~------------------~~~~~~~~~----~~~ 335 (503)
.+.... .+++||||-. ++.++. . .++. .|..++... ...
T Consensus 316 ~L~a~~-RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~L 394 (1033)
T PLN03142 316 LFSTNY-RLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGL 394 (1033)
T ss_pred HhhcCc-EEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhC
Confidence 766554 5889999821 111110 0 0000 000000000 000
Q ss_pred CCCceEEEE-------------------------------------------------------------EEcChhhHHH
Q 010709 336 PTANVIQIL-------------------------------------------------------------EKVSENEKVD 354 (503)
Q Consensus 336 ~~~~~~~~~-------------------------------------------------------------~~~~~~~k~~ 354 (503)
+........ ..+....|+.
T Consensus 395 PpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~ 474 (1033)
T PLN03142 395 PPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMV 474 (1033)
T ss_pred CCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHH
Confidence 000000000 0001123333
Q ss_pred HHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcC---CCcEEEEc
Q 010709 355 RLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNG---STNILVAT 431 (503)
Q Consensus 355 ~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g---~~~vLvaT 431 (503)
.+..++.... ..+.++|||+......+.|.++|...|+.++.+||+++..+|..+++.|++. ...+|++|
T Consensus 475 lLdkLL~~Lk-------~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLST 547 (1033)
T PLN03142 475 LLDKLLPKLK-------ERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLST 547 (1033)
T ss_pred HHHHHHHHHH-------hcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEec
Confidence 3333333322 2345799999999999999999999999999999999999999999999753 24578999
Q ss_pred cccccCCCCCCCCEEEEccCCCChhHHHHhhCccee
Q 010709 432 DVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSF 467 (503)
Q Consensus 432 ~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR 467 (503)
.+++.|||+..+++||+||+++++....|++||+.|
T Consensus 548 rAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHR 583 (1033)
T PLN03142 548 RAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHR 583 (1033)
T ss_pred cccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhh
Confidence 999999999999999999999999999999999888
No 106
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=3.1e-25 Score=229.20 Aligned_cols=148 Identities=20% Similarity=0.329 Sum_probs=127.9
Q ss_pred ccCCCCHHHHHHHH-----HCCCCCC---cHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCC
Q 010709 124 TDMCLHPSIMKDIE-----FHEYTRP---TSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGP 195 (503)
Q Consensus 124 ~~~~l~~~l~~~l~-----~~~~~~~---~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~ 195 (503)
+.+.+.+++.+.+. ..|+..| +|+|.++++.+..++++|+.++||+|||++|++|++..++. +.
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~--------g~ 136 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT--------GK 136 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh--------cC
Confidence 55678888888776 6789998 99999999999999999999999999999999999987754 23
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHH-HHHHHcCCCCCC------
Q 010709 196 LALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGNTSLS------ 268 (503)
Q Consensus 196 ~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~~~~l~------ 268 (503)
.++||+||++||.|.++.+..+...+ ++++.+++||....++.... +++|+|+||++| ++++..+.+.+.
T Consensus 137 ~v~IVTpTrELA~Qdae~m~~L~k~l-GLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vq 213 (970)
T PRK12899 137 PVHLVTVNDYLAQRDCEWVGSVLRWL-GLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVG 213 (970)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhc-CCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhc
Confidence 48999999999999999999998876 59999999999988776554 599999999999 999987655544
Q ss_pred -CccEEEecchhHHh
Q 010709 269 -RVSFVILDEADRML 282 (503)
Q Consensus 269 -~~~~vViDEaH~l~ 282 (503)
.+.++||||||.|+
T Consensus 214 r~~~~~IIDEADsmL 228 (970)
T PRK12899 214 RGFYFAIIDEVDSIL 228 (970)
T ss_pred ccccEEEEechhhhh
Confidence 56899999999855
No 107
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=4.1e-26 Score=214.85 Aligned_cols=319 Identities=18% Similarity=0.197 Sum_probs=222.7
Q ss_pred CcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEE
Q 010709 119 PIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLAL 198 (503)
Q Consensus 119 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~l 198 (503)
.+..|...+.++...+-|++..-...+..+.+.+..+.+++-++++|+||||||++ +|.+........ ...+.
T Consensus 23 ~~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQ--iPq~~~~~~~~~-----~~~v~ 95 (699)
T KOG0925|consen 23 AINPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQ--IPQFVLEYELSH-----LTGVA 95 (699)
T ss_pred hcCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCcccc--CcHHHHHHHHhh-----cccee
Confidence 36678889999999999888765445555555555666777899999999999985 565543332211 24578
Q ss_pred EEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecch
Q 010709 199 VLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEA 278 (503)
Q Consensus 199 il~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEa 278 (503)
...|+|..|.+++.++..-+ ++..+.-.|..-..+.. ...++-+-+||.++|++..... -.+..+++||+|||
T Consensus 96 CTQprrvaamsva~RVadEM----Dv~lG~EVGysIrfEdC--~~~~T~Lky~tDgmLlrEams~-p~l~~y~viiLDea 168 (699)
T KOG0925|consen 96 CTQPRRVAAMSVAQRVADEM----DVTLGEEVGYSIRFEDC--TSPNTLLKYCTDGMLLREAMSD-PLLGRYGVIILDEA 168 (699)
T ss_pred ecCchHHHHHHHHHHHHHHh----ccccchhcccccccccc--CChhHHHHHhcchHHHHHHhhC-cccccccEEEechh
Confidence 88899999999998887766 34444333333221110 1112345689999999988874 45889999999999
Q ss_pred hH-HhhCCCHH-HHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHH
Q 010709 279 DR-MLDMGFEP-QIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRL 356 (503)
Q Consensus 279 H~-l~~~~~~~-~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 356 (503)
|. -+..+..- .+..++.. +++.++|.||||+... ..+.|+.++..+.+.. ...++.++......+.+...
T Consensus 169 hERtlATDiLmGllk~v~~~-rpdLk~vvmSatl~a~---Kfq~yf~n~Pll~vpg----~~PvEi~Yt~e~erDylEaa 240 (699)
T KOG0925|consen 169 HERTLATDILMGLLKEVVRN-RPDLKLVVMSATLDAE---KFQRYFGNAPLLAVPG----THPVEIFYTPEPERDYLEAA 240 (699)
T ss_pred hhhhHHHHHHHHHHHHHHhh-CCCceEEEeecccchH---HHHHHhCCCCeeecCC----CCceEEEecCCCChhHHHHH
Confidence 94 23222222 23333333 4799999999999432 4667788877776654 22344455555555666666
Q ss_pred HHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHC---------CCeEEEEcCCCCHHHHHHHHHHHhc---C-
Q 010709 357 LALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE---------GLHAVALHGGRNQSDRESALRDFRN---G- 423 (503)
Q Consensus 357 ~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~---------~~~v~~lh~~~~~~~r~~~~~~f~~---g- 423 (503)
+..+.+.+.. ..+|-+|||.++.++++..++.+... .+.|+++| +.++..+++.... |
T Consensus 241 irtV~qih~~-----ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~ 311 (699)
T KOG0925|consen 241 IRTVLQIHMC-----EEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGA 311 (699)
T ss_pred HHHHHHHHhc-----cCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCC
Confidence 6655554433 34667999999999999999988753 35789999 5556666665542 1
Q ss_pred -CCcEEEEccccccCCCCCCCCEEEEccCC------------------CChhHHHHhhCcceee
Q 010709 424 -STNILVATDVASRGLDVMGVAHVVNLDLP------------------KVLLAASESLCTTSFN 468 (503)
Q Consensus 424 -~~~vLvaT~~~~~Gldip~v~~VI~~~~p------------------~s~~~~~Qr~GR~gR~ 468 (503)
.++|+|+|++++..+.|+++.+||+-|+. -|.++..||.|||||+
T Consensus 312 ~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt 375 (699)
T KOG0925|consen 312 YGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT 375 (699)
T ss_pred ccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC
Confidence 47899999999999999999999998863 4568999999999997
No 108
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.94 E-value=2.5e-26 Score=233.20 Aligned_cols=316 Identities=18% Similarity=0.197 Sum_probs=222.3
Q ss_pred HHHHCCCCCCcHHHHHHH--HHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHH
Q 010709 135 DIEFHEYTRPTSIQAQAM--PVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEK 212 (503)
Q Consensus 135 ~l~~~~~~~~~~~Q~~~i--~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~ 212 (503)
..+..|...++.||.+++ +.++.+++.|..+||+.|||+++.+-++...+.. +..++.+.|....+..-..
T Consensus 215 ~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~-------rr~~llilp~vsiv~Ek~~ 287 (1008)
T KOG0950|consen 215 YAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR-------RRNVLLILPYVSIVQEKIS 287 (1008)
T ss_pred HHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH-------hhceeEecceeehhHHHHh
Confidence 345678899999999998 5678999999999999999999999999888876 4668999999988887777
Q ss_pred HHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHc--CCCCCCCccEEEecchhHHhhCCCHHHH
Q 010709 213 EVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ--GNTSLSRVSFVILDEADRMLDMGFEPQI 290 (503)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~--~~~~l~~~~~vViDEaH~l~~~~~~~~~ 290 (503)
.+..+.... ++.+..++|...... ..+..++.|||.++-..++.. ..-.+..+++||+||.|.+.+.+.+..+
T Consensus 288 ~l~~~~~~~-G~~ve~y~g~~~p~~----~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~l 362 (1008)
T KOG0950|consen 288 ALSPFSIDL-GFPVEEYAGRFPPEK----RRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAIL 362 (1008)
T ss_pred hhhhhcccc-CCcchhhcccCCCCC----cccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHH
Confidence 787777665 577777776654433 234478999999987655544 1335778999999999998888888888
Q ss_pred HHHHHhC-----CCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCce--EEEEEEcChhhHHHHHHHHHHHH
Q 010709 291 REVMQNL-----PDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANV--IQILEKVSENEKVDRLLALLVEE 363 (503)
Q Consensus 291 ~~il~~~-----~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~k~~~l~~~l~~~ 363 (503)
+.++.++ ....|+|+||||+++. . +++.++.......-..+-.....+ ...+.... +...+ ..+...
T Consensus 363 E~~l~k~~y~~~~~~~~iIGMSATi~N~-~-lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~---r~~~l-r~ia~l 436 (1008)
T KOG0950|consen 363 ELLLAKILYENLETSVQIIGMSATIPNN-S-LLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESS---RNKVL-REIANL 436 (1008)
T ss_pred HHHHHHHHHhccccceeEeeeecccCCh-H-HHHHHhhhhheecccCcccchhccCCCcccccch---hhHHH-HHhhhh
Confidence 7776553 3357899999999753 2 344444432222111111000000 00111111 11111 111110
Q ss_pred HHhhhc------------cCCC-CCcEEEEEcchhhHHHHHHHHHH----------------------------------
Q 010709 364 AFLAEK------------SCHP-FPLTIVFVERKTRCDEVSEALVA---------------------------------- 396 (503)
Q Consensus 364 ~~~~~~------------~~~~-~~~~lIF~~~~~~~~~l~~~L~~---------------------------------- 396 (503)
...... ...+ ...+||||+++..|+.++..+..
T Consensus 437 ~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~V 516 (1008)
T KOG0950|consen 437 YSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPV 516 (1008)
T ss_pred hhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchH
Confidence 000000 0012 23499999999999988765532
Q ss_pred ----CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcc----CCCChhHHHHhhCcceee
Q 010709 397 ----EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLD----LPKVLLAASESLCTTSFN 468 (503)
Q Consensus 397 ----~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~----~p~s~~~~~Qr~GR~gR~ 468 (503)
..+.+.++|+|++.++|..+...|++|...|++||+.++.|+++|..+++|-.- ...+..+|.|++|||||+
T Consensus 517 l~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~ 596 (1008)
T KOG0950|consen 517 LAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRT 596 (1008)
T ss_pred HheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhc
Confidence 124588899999999999999999999999999999999999999888777533 235678999999999998
No 109
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=5.3e-24 Score=219.87 Aligned_cols=302 Identities=18% Similarity=0.173 Sum_probs=217.4
Q ss_pred CCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCC
Q 010709 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (503)
Q Consensus 143 ~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~ 222 (503)
.|+++|.-.--.+.+| -|..++||.|||+++.+|++...+. |..+.||+|++.||.|.++.+..+...+
T Consensus 82 ~~ydVQliGgl~L~~G--~IaEm~TGEGKTL~a~lp~~l~al~--------g~~VhIvT~ndyLA~RD~e~m~~l~~~l- 150 (908)
T PRK13107 82 RHFDVQLLGGMVLDSN--RIAEMRTGEGKTLTATLPAYLNALT--------GKGVHVITVNDYLARRDAENNRPLFEFL- 150 (908)
T ss_pred CcCchHHhcchHhcCC--ccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEeCCHHHHHHHHHHHHHHHHhc-
Confidence 6788887666666555 5889999999999999999877654 4559999999999999999999999887
Q ss_pred CceEEEEECCccHHHHHHHhhCCCcEEEECcHHH-HHHHHcC-CCC-----CCCccEEEecchhHHhhCC----------
Q 010709 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQG-NTS-----LSRVSFVILDEADRMLDMG---------- 285 (503)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~-~~~-----l~~~~~vViDEaH~l~~~~---------- 285 (503)
++.+.++.++....+ +.....++|+++|++.| .+++..+ ... ...+.++||||||.++-..
T Consensus 151 Glsv~~i~~~~~~~~--r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~ 228 (908)
T PRK13107 151 GLTVGINVAGLGQQE--KKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGA 228 (908)
T ss_pred CCeEEEecCCCCHHH--HHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCC
Confidence 699999999887643 23334799999999999 7777664 222 3678999999999743100
Q ss_pred ------CHH-------H------------------------------------HHHHH---Hh-----------------
Q 010709 286 ------FEP-------Q------------------------------------IREVM---QN----------------- 296 (503)
Q Consensus 286 ------~~~-------~------------------------------------~~~il---~~----------------- 296 (503)
... . +...+ ..
T Consensus 229 ~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~ 308 (908)
T PRK13107 229 AEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLH 308 (908)
T ss_pred CccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHH
Confidence 000 0 00111 00
Q ss_pred -----------CCCC-------------------------------------------------------------CcEE
Q 010709 297 -----------LPDK-------------------------------------------------------------HQTL 304 (503)
Q Consensus 297 -----------~~~~-------------------------------------------------------------~q~i 304 (503)
+..+ .++-
T Consensus 309 ~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~ 388 (908)
T PRK13107 309 HVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLA 388 (908)
T ss_pred HHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhh
Confidence 0000 1345
Q ss_pred EEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcch
Q 010709 305 LFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERK 384 (503)
Q Consensus 305 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~ 384 (503)
+||+|...+-.++.+-|--+-+.+ ....+.... -..-..+.....|...+...+...... +.++||||.+.
T Consensus 389 GMTGTa~te~~Ef~~iY~l~Vv~I-PTnkp~~R~-d~~d~iy~t~~~K~~Aii~ei~~~~~~-------GrpVLV~t~sv 459 (908)
T PRK13107 389 GMTGTADTEAFEFQHIYGLDTVVV-PTNRPMVRK-DMADLVYLTADEKYQAIIKDIKDCRER-------GQPVLVGTVSI 459 (908)
T ss_pred cccCCChHHHHHHHHHhCCCEEEC-CCCCCccce-eCCCcEEeCHHHHHHHHHHHHHHHHHc-------CCCEEEEeCcH
Confidence 666666554444444443322222 111111111 111223445677888888877665433 34699999999
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCC----------------------
Q 010709 385 TRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMG---------------------- 442 (503)
Q Consensus 385 ~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~---------------------- 442 (503)
+.++.+++.|...|+.+..+|+.+.+.++..+.+.|+.|. |+|||++++||.||.=
T Consensus 460 ~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~ 537 (908)
T PRK13107 460 EQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKI 537 (908)
T ss_pred HHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHH
Confidence 9999999999999999999999999999999999999997 9999999999999871
Q ss_pred ---------------CCEEEEccCCCChhHHHHhhCcceee
Q 010709 443 ---------------VAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 443 ---------------v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
==+||-...+.|..-=.|-.||+||.
T Consensus 538 ~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQ 578 (908)
T PRK13107 538 KADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQ 578 (908)
T ss_pred HHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccC
Confidence 13789899999988888999999985
No 110
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.93 E-value=3.1e-24 Score=215.90 Aligned_cols=306 Identities=18% Similarity=0.178 Sum_probs=207.4
Q ss_pred CCCCcHHHHHHHHHHh----cCCC-eEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHH
Q 010709 141 YTRPTSIQAQAMPVAL----SGRD-LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVK 215 (503)
Q Consensus 141 ~~~~~~~Q~~~i~~i~----~~~~-vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~ 215 (503)
-..|+.+|..||..+. +|++ ++++++||+|||..+ +.++..++.. +..+++|+|+-+++|+.|.+..+.
T Consensus 163 ~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~-----~~~KRVLFLaDR~~Lv~QA~~af~ 236 (875)
T COG4096 163 AIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKS-----GWVKRVLFLADRNALVDQAYGAFE 236 (875)
T ss_pred cccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhc-----chhheeeEEechHHHHHHHHHHHH
Confidence 3468999999997765 4554 999999999999887 5566666664 346889999999999999999998
Q ss_pred HHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcC-----CCCCCCccEEEecchhHHhhCCCHHHH
Q 010709 216 ALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG-----NTSLSRVSFVILDEADRMLDMGFEPQI 290 (503)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-----~~~l~~~~~vViDEaH~l~~~~~~~~~ 290 (503)
.+..... .+..+.+... ...++|.|+|.+++...+... .+....+++|||||||+-+ ...+
T Consensus 237 ~~~P~~~--~~n~i~~~~~--------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi----~~~~ 302 (875)
T COG4096 237 DFLPFGT--KMNKIEDKKG--------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI----YSEW 302 (875)
T ss_pred HhCCCcc--ceeeeecccC--------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH----Hhhh
Confidence 8875432 2222322211 124799999999998877664 3456679999999999855 5567
Q ss_pred HHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhc-CCCeEEE------------------e----CCCCCCCCce-------
Q 010709 291 REVMQNLPDKHQTLLFSATMPVEIEALAQEYL-TDPVQVK------------------V----GKVSSPTANV------- 340 (503)
Q Consensus 291 ~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~-~~~~~~~------------------~----~~~~~~~~~~------- 340 (503)
..++.++..-. ++++|||...+...--.|+ ++|.... + ...+......
T Consensus 303 ~~I~dYFdA~~--~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~ 380 (875)
T COG4096 303 SSILDYFDAAT--QGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQ 380 (875)
T ss_pred HHHHHHHHHHH--HhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhh
Confidence 78888876543 4459999765554444444 4443321 0 0000000000
Q ss_pred -------EEEEEEcC------hhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHC-----CCeEE
Q 010709 341 -------IQILEKVS------ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-----GLHAV 402 (503)
Q Consensus 341 -------~~~~~~~~------~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~-----~~~v~ 402 (503)
.+.+...+ -......+...+.+..... ......+|+||||.+..+|+.+...|... +--+.
T Consensus 381 g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~-~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~ 459 (875)
T COG4096 381 GEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRG-ATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAM 459 (875)
T ss_pred ccccCcccccccccccchhccccchHHHHHHHHHHHhccc-cCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEE
Confidence 01111111 1122333444444443332 22233689999999999999999999865 33466
Q ss_pred EEcCCCCHHHHHHHHHHHhc--CCCcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCcceeeeee
Q 010709 403 ALHGGRNQSDRESALRDFRN--GSTNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFNITT 471 (503)
Q Consensus 403 ~lh~~~~~~~r~~~~~~f~~--g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~~~~ 471 (503)
.+.++-.+.+ ..++.|.. .-.+|.|+.+++.+|+|+|.|.++|++..-+|..-|.|++||+-|..-.
T Consensus 460 ~IT~d~~~~q--~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~ 528 (875)
T COG4096 460 KITGDAEQAQ--ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPD 528 (875)
T ss_pred EEeccchhhH--HHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCcc
Confidence 6777655433 34555544 4467999999999999999999999999999999999999999886433
No 111
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.91 E-value=1.6e-22 Score=200.30 Aligned_cols=324 Identities=17% Similarity=0.199 Sum_probs=221.8
Q ss_pred CCcHHHHHHHHHHh----cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q 010709 143 RPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (503)
Q Consensus 143 ~~~~~Q~~~i~~i~----~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 218 (503)
.++++|.+.+.++. +|-++|+..++|.|||++. +.+|.++..... . .+..||++|...|.+ |.+++++|+
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~~---~-~GPfLVi~P~StL~N-W~~Ef~rf~ 240 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRKG---I-PGPFLVIAPKSTLDN-WMNEFKRFT 240 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhcC---C-CCCeEEEeeHhhHHH-HHHHHHHhC
Confidence 68999999999976 4668999999999999986 677777776432 1 233699999999877 888899987
Q ss_pred ccCCCceEEEEECCccHHHHHH-H--hhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHH
Q 010709 219 RSLDSFKTAIVVGGTNIAEQRS-E--LRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ 295 (503)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~ 295 (503)
. ++++.+++|+...+.... . .....+|+|+|+++.++.- ..+.--.++++||||||++-+. ...+.++++
T Consensus 241 P---~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk--~~lk~~~W~ylvIDEaHRiKN~--~s~L~~~lr 313 (971)
T KOG0385|consen 241 P---SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK--SFLKKFNWRYLVIDEAHRIKNE--KSKLSKILR 313 (971)
T ss_pred C---CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH--HHHhcCCceEEEechhhhhcch--hhHHHHHHH
Confidence 4 678888998875433221 1 1246899999999987642 2334456899999999999776 556778888
Q ss_pred hCCCCCcEEEEEeeCC-HHHHHHH----------------------------------------HHh-------------
Q 010709 296 NLPDKHQTLLFSATMP-VEIEALA----------------------------------------QEY------------- 321 (503)
Q Consensus 296 ~~~~~~q~i~~SAT~~-~~~~~~~----------------------------------------~~~------------- 321 (503)
.+....+ +++|+||- +++.++. +-|
T Consensus 314 ~f~~~nr-LLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sL 392 (971)
T KOG0385|consen 314 EFKTDNR-LLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSL 392 (971)
T ss_pred Hhcccce-eEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcC
Confidence 8876664 67788871 1111110 000
Q ss_pred ----------------------------------------------------cCCCeEEEeCCCCCCCCceEEEEEEcCh
Q 010709 322 ----------------------------------------------------LTDPVQVKVGKVSSPTANVIQILEKVSE 349 (503)
Q Consensus 322 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (503)
...|..+. +..+.+... ..-..+..
T Consensus 393 ppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~-g~ePg~pyt--tdehLv~n 469 (971)
T KOG0385|consen 393 PPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFD-GAEPGPPYT--TDEHLVTN 469 (971)
T ss_pred CCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccC-CCCCCCCCC--cchHHHhc
Confidence 00011110 000101111 11111233
Q ss_pred hhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCC---Cc
Q 010709 350 NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGS---TN 426 (503)
Q Consensus 350 ~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~---~~ 426 (503)
..|+..|-+++..... .+.++|||.+.....+-|.+++.-+++..+.+.|.++-++|...++.|.... .-
T Consensus 470 SGKm~vLDkLL~~Lk~-------~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~Fi 542 (971)
T KOG0385|consen 470 SGKMLVLDKLLPKLKE-------QGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFI 542 (971)
T ss_pred CcceehHHHHHHHHHh-------CCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEE
Confidence 4566566666655543 3456999999999999999999999999999999999999999999997643 44
Q ss_pred EEEEccccccCCCCCCCCEEEEccCCCChh------HHHHhhCc-----ceeeeeecc--CchhhhhhHHHHHHHHH
Q 010709 427 ILVATDVASRGLDVMGVAHVVNLDLPKVLL------AASESLCT-----TSFNITTNL--DGDMKKLEFCLILAITV 490 (503)
Q Consensus 427 vLvaT~~~~~Gldip~v~~VI~~~~p~s~~------~~~Qr~GR-----~gR~~~~~~--~~~~~~~~~~~~~~~~~ 490 (503)
.|++|.+++.|||+..+++||.||--+++. +..||||. +-|..+... ..-+++....+.++..+
T Consensus 543 FlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~Ld~~V 619 (971)
T KOG0385|consen 543 FLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLRLDKLV 619 (971)
T ss_pred EEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhchhhhh
Confidence 689999999999999999999999988873 44566665 223222222 14455555555444433
No 112
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.90 E-value=4.3e-22 Score=203.62 Aligned_cols=281 Identities=25% Similarity=0.360 Sum_probs=199.2
Q ss_pred CCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhc
Q 010709 140 EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (503)
Q Consensus 140 ~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~ 219 (503)
|+ .|+..|+--...+..|+++-+.||||.|||+- .+.+-.++... |++++||+||+.|+.|+++.+++++.
T Consensus 80 G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTf-g~~~sl~~a~k-------gkr~yii~PT~~Lv~Q~~~kl~~~~e 150 (1187)
T COG1110 80 GF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTF-GLLMSLYLAKK-------GKRVYIIVPTTTLVRQVYERLKKFAE 150 (1187)
T ss_pred CC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHH-HHHHHHHHHhc-------CCeEEEEecCHHHHHHHHHHHHHHHh
Confidence 44 99999999999999999999999999999973 34344444432 68899999999999999999999986
Q ss_pred cCCCceEEE-EECCccHH---HHHHHhh-CCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCC---------
Q 010709 220 SLDSFKTAI-VVGGTNIA---EQRSELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG--------- 285 (503)
Q Consensus 220 ~~~~~~~~~-~~~~~~~~---~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~--------- 285 (503)
......+.. +++..... +....+. ++.+|+|+|.+-|.+.... +.--++++|++|++|.++..+
T Consensus 151 ~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~LkaskNvDriL~L 228 (1187)
T COG1110 151 DAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILKASKNVDRLLRL 228 (1187)
T ss_pred hcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHhccccHHHHHHH
Confidence 654344433 34433322 2223333 5799999998888665543 222478999999999655322
Q ss_pred --CHHH-----------------------HHHHHHh--------CCCCCcEEEEEeeCCHHH--HHHHHHhcCCCeEEEe
Q 010709 286 --FEPQ-----------------------IREVMQN--------LPDKHQTLLFSATMPVEI--EALAQEYLTDPVQVKV 330 (503)
Q Consensus 286 --~~~~-----------------------~~~il~~--------~~~~~q~i~~SAT~~~~~--~~~~~~~~~~~~~~~~ 330 (503)
|... +++++.. -.+..++|..|||..+.- ..+.+..++ +.+
T Consensus 229 lGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg----Fev 304 (1187)
T COG1110 229 LGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG----FEV 304 (1187)
T ss_pred cCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC----Ccc
Confidence 1111 1111111 123467999999984432 223444443 234
Q ss_pred CCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcc---hhhHHHHHHHHHHCCCeEEEEcCC
Q 010709 331 GKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVER---KTRCDEVSEALVAEGLHAVALHGG 407 (503)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~---~~~~~~l~~~L~~~~~~v~~lh~~ 407 (503)
+.......++...+......++...+++.+.. ..|||++. ++.+++++++|+..|+++..+|++
T Consensus 305 G~~~~~LRNIvD~y~~~~~~e~~~elvk~lG~-------------GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~ 371 (1187)
T COG1110 305 GSGGEGLRNIVDIYVESESLEKVVELVKKLGD-------------GGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE 371 (1187)
T ss_pred CccchhhhheeeeeccCccHHHHHHHHHHhCC-------------CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc
Confidence 44444555666655555555555555554432 38999999 999999999999999999999994
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEc----cccccCCCCCC-CCEEEEccCCC
Q 010709 408 RNQSDRESALRDFRNGSTNILVAT----DVASRGLDVMG-VAHVVNLDLPK 453 (503)
Q Consensus 408 ~~~~~r~~~~~~f~~g~~~vLvaT----~~~~~Gldip~-v~~VI~~~~p~ 453 (503)
- .+.++.|..|++++||++ .++-||||+|. ++++|++|.|+
T Consensus 372 ~-----~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 372 K-----EEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred c-----hhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 3 678999999999999976 68899999996 89999999995
No 113
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.90 E-value=4.5e-22 Score=211.16 Aligned_cols=312 Identities=19% Similarity=0.167 Sum_probs=199.1
Q ss_pred CCcHHHHHHHHHHhcC---C-CeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q 010709 143 RPTSIQAQAMPVALSG---R-DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (503)
Q Consensus 143 ~~~~~Q~~~i~~i~~~---~-~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 218 (503)
.+++.|..++..+... . .+++.||||+|||++.+++++...... .....+++++.|++.++++++++++.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~----~~~~~r~i~vlP~~t~ie~~~~r~~~~~ 270 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK----IKLKSRVIYVLPFRTIIEDMYRRAKEIF 270 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc----ccccceEEEEccHHHHHHHHHHHHHhhh
Confidence 3588999999988743 4 689999999999999888777665542 1146889999999999999999999877
Q ss_pred ccCCCceEEEEECCccHHHHHHH-----h---------hCCCcEEEECcHHHHHHHHc-CCCC-C--CCccEEEecchhH
Q 010709 219 RSLDSFKTAIVVGGTNIAEQRSE-----L---------RGGVSIVVATPGRFLDHLQQ-GNTS-L--SRVSFVILDEADR 280 (503)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~-----~---------~~~~~Ilv~Tp~~l~~~l~~-~~~~-l--~~~~~vViDEaH~ 280 (503)
.... +.....++.....-.... . .....+.++||-........ ..+. + -..+.+|+||+|.
T Consensus 271 ~~~~-~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~ 349 (733)
T COG1203 271 GLFS-VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHL 349 (733)
T ss_pred cccc-cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHh
Confidence 4432 111112222221110000 0 01133444444444332111 1111 1 1246899999997
Q ss_pred HhhCCCHHHHHHHHHhC-CCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCC-CceEEEEEE-cChhhHH-HHH
Q 010709 281 MLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPT-ANVIQILEK-VSENEKV-DRL 356 (503)
Q Consensus 281 l~~~~~~~~~~~il~~~-~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~k~-~~l 356 (503)
+.+......+..++..+ ..+..+|+||||+|+.+...+...+.+...+......... ......... ....... ...
T Consensus 350 ~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 429 (733)
T COG1203 350 YADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEEL 429 (733)
T ss_pred hcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhh
Confidence 65542333334443333 2356799999999999999888887765554433210000 000000000 0000000 011
Q ss_pred HHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHh----cCCCcEEEEcc
Q 010709 357 LALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFR----NGSTNILVATD 432 (503)
Q Consensus 357 ~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~----~g~~~vLvaT~ 432 (503)
..... ......++++|-|||+..|.++++.|+..+..+..+||.+...+|.+.++.+. .+...|+|||+
T Consensus 430 ~~~~~-------~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQ 502 (733)
T COG1203 430 IELIS-------EEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQ 502 (733)
T ss_pred hhcch-------hhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEee
Confidence 11111 11135578999999999999999999999888999999999999999888654 46889999999
Q ss_pred ccccCCCCCCCCEEEEccCCCChhHHHHhhCcceeee
Q 010709 433 VASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFNI 469 (503)
Q Consensus 433 ~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~~ 469 (503)
+.+-|+|+. .+++|-= +..+.+.+||+||++|..
T Consensus 503 VIEagvDid-fd~mITe--~aPidSLIQR~GRv~R~g 536 (733)
T COG1203 503 VIEAGVDID-FDVLITE--LAPIDSLIQRAGRVNRHG 536 (733)
T ss_pred EEEEEeccc-cCeeeec--CCCHHHHHHHHHHHhhcc
Confidence 999999997 6666543 334788999999999965
No 114
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.89 E-value=7.3e-22 Score=204.72 Aligned_cols=340 Identities=17% Similarity=0.196 Sum_probs=232.6
Q ss_pred CCCcHHHHHHHHHHh----cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHH
Q 010709 142 TRPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (503)
Q Consensus 142 ~~~~~~Q~~~i~~i~----~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 217 (503)
..++.+|.+.+.+++ .++++|+..++|.|||++- +.+|.++...... .|| .|||+|...+.. |.++|..+
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqt-i~fl~~l~~~~~~---~gp-flvvvplst~~~-W~~ef~~w 442 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQT-ITFLSYLFHSLQI---HGP-FLVVVPLSTITA-WEREFETW 442 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHH-HHHHHHHHHhhhc---cCC-eEEEeehhhhHH-HHHHHHHH
Confidence 689999999999987 6788999999999999875 5566666554321 233 699999988776 88999998
Q ss_pred hccCCCceEEEEECCccHHHHHHHhh----C-----CCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHH
Q 010709 218 SRSLDSFKTAIVVGGTNIAEQRSELR----G-----GVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEP 288 (503)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~ 288 (503)
. ++++.+++|....++.++... . ..+++++|.+.++.-.. .+.--.+.+++|||||++-+. ..
T Consensus 443 ~----~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~--~L~~i~w~~~~vDeahrLkN~--~~ 514 (1373)
T KOG0384|consen 443 T----DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA--ELSKIPWRYLLVDEAHRLKND--ES 514 (1373)
T ss_pred h----hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh--hhccCCcceeeecHHhhcCch--HH
Confidence 8 578999999888777665542 2 47899999998864322 122335789999999998765 45
Q ss_pred HHHHHHHhCCCCCcEEEEEeeC-CHHHHHHHHHh-cCCCeEEE---------------------------------eCCC
Q 010709 289 QIREVMQNLPDKHQTLLFSATM-PVEIEALAQEY-LTDPVQVK---------------------------------VGKV 333 (503)
Q Consensus 289 ~~~~il~~~~~~~q~i~~SAT~-~~~~~~~~~~~-~~~~~~~~---------------------------------~~~~ 333 (503)
.+...+..+.-+.+ +++|+|| .+++.++..-. +..|..+. -+-.
T Consensus 515 ~l~~~l~~f~~~~r-llitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdve 593 (1373)
T KOG0384|consen 515 KLYESLNQFKMNHR-LLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVE 593 (1373)
T ss_pred HHHHHHHHhcccce-eeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhc
Confidence 56666777776665 5666676 44555543211 11221110 0111
Q ss_pred CCCCCceEEEEEE-cChhhHHHH---------------------HHHHHHHH----------------------------
Q 010709 334 SSPTANVIQILEK-VSENEKVDR---------------------LLALLVEE---------------------------- 363 (503)
Q Consensus 334 ~~~~~~~~~~~~~-~~~~~k~~~---------------------l~~~l~~~---------------------------- 363 (503)
........+.+.. +...+|-.+ ++..+.+.
T Consensus 594 kslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~ 673 (1373)
T KOG0384|consen 594 KSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDE 673 (1373)
T ss_pred cCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHH
Confidence 1122222222211 110000000 00000000
Q ss_pred ----HHhh-----------hccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhc---CCC
Q 010709 364 ----AFLA-----------EKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRN---GST 425 (503)
Q Consensus 364 ----~~~~-----------~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~---g~~ 425 (503)
..+. .+....+++||||.+.....+.|+++|..++++.-.+.|....+-|+..++.|.. ...
T Consensus 674 ~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddF 753 (1373)
T KOG0384|consen 674 ALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDF 753 (1373)
T ss_pred HHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCce
Confidence 0000 0001234789999999999999999999999999999999999999999999975 356
Q ss_pred cEEEEccccccCCCCCCCCEEEEccCCCChhHHH------HhhCc-----ceeeeeecc--CchhhhhhHHHHHHHHHHH
Q 010709 426 NILVATDVASRGLDVMGVAHVVNLDLPKVLLAAS------ESLCT-----TSFNITTNL--DGDMKKLEFCLILAITVLL 492 (503)
Q Consensus 426 ~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~------Qr~GR-----~gR~~~~~~--~~~~~~~~~~~~~~~~~~~ 492 (503)
..|+||.+++-|||+..+++||.||--+++.+=+ ||||. +-|.++... ...+.+......|+-+|+|
T Consensus 754 vFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ 833 (1373)
T KOG0384|consen 754 VFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVLDHAVIQ 833 (1373)
T ss_pred EEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHHhhhHHHHHH
Confidence 7899999999999999999999999999885444 56665 344444333 4889999999999999999
Q ss_pred HHHH
Q 010709 493 FVIF 496 (503)
Q Consensus 493 ~~~~ 496 (503)
-|.+
T Consensus 834 ~m~t 837 (1373)
T KOG0384|consen 834 RMDT 837 (1373)
T ss_pred hhcc
Confidence 9875
No 115
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.89 E-value=6.7e-21 Score=200.21 Aligned_cols=304 Identities=18% Similarity=0.163 Sum_probs=181.7
Q ss_pred CcHHHHHHHHHHh----c------CCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHH
Q 010709 144 PTSIQAQAMPVAL----S------GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 213 (503)
Q Consensus 144 ~~~~Q~~~i~~i~----~------~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~ 213 (503)
++.+|..|+..+. . .+..+++.+||||||++.+.. ...+... ...+++|||+|+++|..|+.+.
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~l-a~~l~~~-----~~~~~vl~lvdR~~L~~Q~~~~ 312 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFA-ARKALEL-----LKNPKVFFVVDRRELDYQLMKE 312 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHH-HHHHHhh-----cCCCeEEEEECcHHHHHHHHHH
Confidence 7889999998764 2 245999999999999876433 3333321 2367899999999999999999
Q ss_pred HHHHhccCCCceEEEEECCccHHHHHHHhh-CCCcEEEECcHHHHHHHHcC--CCCCCCc-cEEEecchhHHhhCCCHHH
Q 010709 214 VKALSRSLDSFKTAIVVGGTNIAEQRSELR-GGVSIVVATPGRFLDHLQQG--NTSLSRV-SFVILDEADRMLDMGFEPQ 289 (503)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~--~~~l~~~-~~vViDEaH~l~~~~~~~~ 289 (503)
|..++... . .+..+.......+. ....|+|+|.+.|...+... .+..... -+||+||||+... ..
T Consensus 313 f~~~~~~~--~-----~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~----~~ 381 (667)
T TIGR00348 313 FQSLQKDC--A-----ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY----GE 381 (667)
T ss_pred HHhhCCCC--C-----cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc----hH
Confidence 99886321 0 11112222223232 34689999999997644321 1221112 2899999998642 23
Q ss_pred HHHHHH-hCCCCCcEEEEEeeCCHHHHHHHHHhc----CCCeEEEeCCCCCCCCc--eEEEEEE------cCh-------
Q 010709 290 IREVMQ-NLPDKHQTLLFSATMPVEIEALAQEYL----TDPVQVKVGKVSSPTAN--VIQILEK------VSE------- 349 (503)
Q Consensus 290 ~~~il~-~~~~~~q~i~~SAT~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~------~~~------- 349 (503)
+...+. .++ +...++|||||-..........+ +++... ..-....... +...+.. +..
T Consensus 382 ~~~~l~~~~p-~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~-Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~ 459 (667)
T TIGR00348 382 LAKNLKKALK-NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHR-YFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFF 459 (667)
T ss_pred HHHHHHhhCC-CCcEEEEeCCCcccccccccccccCCCCCeEEE-eeHHHHhhcCCeeeEEEEecchhhccChHHHHHHH
Confidence 445553 444 46699999999432111000111 122111 0000000000 0000000 000
Q ss_pred --------------------------------hhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHC
Q 010709 350 --------------------------------NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE 397 (503)
Q Consensus 350 --------------------------------~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~ 397 (503)
...+..+...+.++...... ...+|++|||.++..|..+++.|.+.
T Consensus 460 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~--~~~~kamvv~~sr~~a~~~~~~l~~~ 537 (667)
T TIGR00348 460 DEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKE--LFKFKAMVVAISRYACVEEKNALDEE 537 (667)
T ss_pred HHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhh--cccCceeEEEecHHHHHHHHHHHHhh
Confidence 00011111112222111111 12478999999999999999988664
Q ss_pred -----CCeEEEEcCCCCHH---------------------HHHHHHHHHhc-CCCcEEEEccccccCCCCCCCCEEEEcc
Q 010709 398 -----GLHAVALHGGRNQS---------------------DRESALRDFRN-GSTNILVATDVASRGLDVMGVAHVVNLD 450 (503)
Q Consensus 398 -----~~~v~~lh~~~~~~---------------------~r~~~~~~f~~-g~~~vLvaT~~~~~Gldip~v~~VI~~~ 450 (503)
+...+.+++..... ....++++|++ +..+|||.++++.+|+|.|.+.+++...
T Consensus 538 ~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldK 617 (667)
T TIGR00348 538 LNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDK 617 (667)
T ss_pred cccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEec
Confidence 23455565543322 22468888976 6789999999999999999999988888
Q ss_pred CCCChhHHHHhhCcceeee
Q 010709 451 LPKVLLAASESLCTTSFNI 469 (503)
Q Consensus 451 ~p~s~~~~~Qr~GR~gR~~ 469 (503)
+-++. .++|.+||+.|..
T Consensus 618 plk~h-~LlQai~R~nR~~ 635 (667)
T TIGR00348 618 PLKYH-GLLQAIARTNRID 635 (667)
T ss_pred ccccc-HHHHHHHHhcccc
Confidence 77765 5899999999964
No 116
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.88 E-value=1.5e-20 Score=195.13 Aligned_cols=113 Identities=22% Similarity=0.311 Sum_probs=101.7
Q ss_pred hhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEE
Q 010709 349 ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNIL 428 (503)
Q Consensus 349 ~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vL 428 (503)
...++..++..+.... ..+.++||||++++.++.+++.|...|+.+..+||++++.+|.++++.|+.|++.||
T Consensus 424 ~~~qi~~Ll~eI~~~~-------~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VL 496 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRV-------ARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVL 496 (655)
T ss_pred ccchHHHHHHHHHHHH-------cCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEE
Confidence 3456666666666543 234469999999999999999999999999999999999999999999999999999
Q ss_pred EEccccccCCCCCCCCEEEEcc-----CCCChhHHHHhhCcceee
Q 010709 429 VATDVASRGLDVMGVAHVVNLD-----LPKVLLAASESLCTTSFN 468 (503)
Q Consensus 429 vaT~~~~~Gldip~v~~VI~~~-----~p~s~~~~~Qr~GR~gR~ 468 (503)
|||+++++|+|+|++++||++| .|.+..+|+||+||+||.
T Consensus 497 V~t~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~ 541 (655)
T TIGR00631 497 VGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 541 (655)
T ss_pred EEcChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC
Confidence 9999999999999999999988 899999999999999996
No 117
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.88 E-value=6.2e-21 Score=182.65 Aligned_cols=156 Identities=21% Similarity=0.207 Sum_probs=121.8
Q ss_pred CCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEE
Q 010709 300 KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIV 379 (503)
Q Consensus 300 ~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lI 379 (503)
..|+|.+||||.+--.... -++.+.-.+...+...+ .+..-+....++.|+..+....... .++||
T Consensus 386 ~~q~i~VSATPg~~E~e~s---~~~vveQiIRPTGLlDP----~ievRp~~~QvdDL~~EI~~r~~~~-------eRvLV 451 (663)
T COG0556 386 IPQTIYVSATPGDYELEQS---GGNVVEQIIRPTGLLDP----EIEVRPTKGQVDDLLSEIRKRVAKN-------ERVLV 451 (663)
T ss_pred cCCEEEEECCCChHHHHhc---cCceeEEeecCCCCCCC----ceeeecCCCcHHHHHHHHHHHHhcC-------CeEEE
Confidence 4699999999965322111 11222222222222222 2233355667888888887766544 35999
Q ss_pred EEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccC-----CCC
Q 010709 380 FVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDL-----PKV 454 (503)
Q Consensus 380 F~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~-----p~s 454 (503)
-+-+++.++.|.++|.+.|+++..+|++..+-+|.++++.++.|..+|||..+++-+|+|+|.|.+|..+|. .+|
T Consensus 452 TtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRs 531 (663)
T COG0556 452 TTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRS 531 (663)
T ss_pred EeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998885 467
Q ss_pred hhHHHHhhCcceeee
Q 010709 455 LLAASESLCTTSFNI 469 (503)
Q Consensus 455 ~~~~~Qr~GR~gR~~ 469 (503)
-.+.+|-+|||.|+.
T Consensus 532 e~SLIQtIGRAARN~ 546 (663)
T COG0556 532 ERSLIQTIGRAARNV 546 (663)
T ss_pred cchHHHHHHHHhhcc
Confidence 899999999999975
No 118
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.88 E-value=1.6e-21 Score=197.60 Aligned_cols=160 Identities=18% Similarity=0.207 Sum_probs=116.6
Q ss_pred CCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCC
Q 010709 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (503)
Q Consensus 143 ~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~ 222 (503)
.|..||.+.+..+-.++.++|+|||.+|||.+- ..++...+.. .+...+|+++|+++|++|+...+........
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfis-fY~iEKVLRe-----sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t 584 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFIS-FYAIEKVLRE-----SDSDVVIYVAPTKALVNQVSANVYARFDTKT 584 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceecc-HHHHHHHHhh-----cCCCEEEEecchHHHhhhhhHHHHHhhccCc
Confidence 588999999999999999999999999999754 3345555543 3467799999999999999988876653221
Q ss_pred CceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHc---CCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhCCC
Q 010709 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ---GNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPD 299 (503)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~---~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~ 299 (503)
-.+-..+.|....+-... .-.|.|+|+-|+.+..++.. ......++++||+||+|.+.+..-...+++++...+
T Consensus 585 ~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~- 661 (1330)
T KOG0949|consen 585 FLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIP- 661 (1330)
T ss_pred cccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhcC-
Confidence 122222333322221111 22599999999999888876 344578899999999998877765666777777665
Q ss_pred CCcEEEEEeeCCH
Q 010709 300 KHQTLLFSATMPV 312 (503)
Q Consensus 300 ~~q~i~~SAT~~~ 312 (503)
+.++++|||+.+
T Consensus 662 -CP~L~LSATigN 673 (1330)
T KOG0949|consen 662 -CPFLVLSATIGN 673 (1330)
T ss_pred -CCeeEEecccCC
Confidence 668999999843
No 119
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.87 E-value=1e-19 Score=197.36 Aligned_cols=308 Identities=19% Similarity=0.236 Sum_probs=188.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHH----HHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccc
Q 010709 128 LHPSIMKDIEFHEYTRPTSIQAQAMP----VALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPT 203 (503)
Q Consensus 128 l~~~l~~~l~~~~~~~~~~~Q~~~i~----~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Pt 203 (503)
+.+...+.+...||. +++.|.+.+. .+.+++++++.||||+|||++|++|++.+.. . +.+++|.+||
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-~-------~~~vvi~t~t 301 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-T-------EKPVVISTNT 301 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-C-------CCeEEEEeCc
Confidence 334666777777876 8899998776 4447788999999999999999999987654 1 4579999999
Q ss_pred HHHHHHHHH-HHHHHhccCC-CceEEEEECCccH--------------------------------------H-------
Q 010709 204 RELAQQIEK-EVKALSRSLD-SFKTAIVVGGTNI--------------------------------------A------- 236 (503)
Q Consensus 204 r~La~q~~~-~~~~~~~~~~-~~~~~~~~~~~~~--------------------------------------~------- 236 (503)
++|..|+.. .+..+.+.++ ++++.++.|+... .
T Consensus 302 ~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~ 381 (850)
T TIGR01407 302 KVLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGG 381 (850)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCc
Confidence 999999865 4555543321 3566666653321 0
Q ss_pred --------------------------HHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCC-----
Q 010709 237 --------------------------EQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG----- 285 (503)
Q Consensus 237 --------------------------~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~----- 285 (503)
...+.....++|+|+...-|+..+......+...+++||||||++.+..
T Consensus 382 ~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~~~ 461 (850)
T TIGR01407 382 NKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQLQ 461 (850)
T ss_pred chhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHHhc
Confidence 0001111346899999888877765443345667899999999854310
Q ss_pred --C-----HH----------------------------------------------------------------HHHHHH
Q 010709 286 --F-----EP----------------------------------------------------------------QIREVM 294 (503)
Q Consensus 286 --~-----~~----------------------------------------------------------------~~~~il 294 (503)
+ .. .+...+
T Consensus 462 ~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~ 541 (850)
T TIGR01407 462 EELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFD 541 (850)
T ss_pred ceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 0 00 000000
Q ss_pred Hh-----------C-------------------------------------CCCCcEEEEEeeCCHH-HHHHHHHhcCCC
Q 010709 295 QN-----------L-------------------------------------PDKHQTLLFSATMPVE-IEALAQEYLTDP 325 (503)
Q Consensus 295 ~~-----------~-------------------------------------~~~~q~i~~SAT~~~~-~~~~~~~~~~~~ 325 (503)
.. + +....+|++|||+... -.......++-+
T Consensus 542 ~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~ 621 (850)
T TIGR01407 542 LALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLT 621 (850)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCC
Confidence 00 0 0123578999999632 122333334422
Q ss_pred --eEEEeCCCCCC-CCceEEEE-EEcC------hhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHH
Q 010709 326 --VQVKVGKVSSP-TANVIQIL-EKVS------ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALV 395 (503)
Q Consensus 326 --~~~~~~~~~~~-~~~~~~~~-~~~~------~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~ 395 (503)
........... ..+...++ ...+ .......+...+.+... ..++++|||+++.+..+.++..|.
T Consensus 622 ~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~------~~~g~~LVlftS~~~l~~v~~~L~ 695 (850)
T TIGR01407 622 DVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITA------ITSPKILVLFTSYEMLHMVYDMLN 695 (850)
T ss_pred ccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHH------hcCCCEEEEeCCHHHHHHHHHHHh
Confidence 11112111111 11111111 1111 11222233333333221 134679999999999999999997
Q ss_pred H----CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCC--EEEEccCCC
Q 010709 396 A----EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVA--HVVNLDLPK 453 (503)
Q Consensus 396 ~----~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~--~VI~~~~p~ 453 (503)
. .++.+. ..+.. ..|.++++.|++|+..||++|+.+++|||+|+.. +||..++|-
T Consensus 696 ~~~~~~~~~~l--~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf 756 (850)
T TIGR01407 696 ELPEFEGYEVL--AQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPF 756 (850)
T ss_pred hhccccCceEE--ecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCC
Confidence 5 234433 33333 4788999999999999999999999999999865 677888763
No 120
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.87 E-value=1.8e-20 Score=192.76 Aligned_cols=299 Identities=21% Similarity=0.251 Sum_probs=202.2
Q ss_pred CCCcHHHHHHHHHHhcC----CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHH
Q 010709 142 TRPTSIQAQAMPVALSG----RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (503)
Q Consensus 142 ~~~~~~Q~~~i~~i~~~----~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 217 (503)
..+.+-|..++..+... +..++.|.||||||.+| +.++...+.+ |+.+|+++|-..|..|+.++|+..
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvY-l~~i~~~L~~-------GkqvLvLVPEI~Ltpq~~~rf~~r 268 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVY-LEAIAKVLAQ-------GKQVLVLVPEIALTPQLLARFKAR 268 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHH-HHHHHHHHHc-------CCEEEEEeccccchHHHHHHHHHH
Confidence 36788899999998755 45999999999999998 5566666664 788999999999999999999988
Q ss_pred hccCCCceEEEEECCccHH----HHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhC---C--CHH
Q 010709 218 SRSLDSFKTAIVVGGTNIA----EQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM---G--FEP 288 (503)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~---~--~~~ 288 (503)
+. .++.+++++-+.. .+.+...+...|+|+|-..+. ..+.++++|||||-|.-... + +..
T Consensus 269 Fg----~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~prYhA 337 (730)
T COG1198 269 FG----AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGPRYHA 337 (730)
T ss_pred hC----CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCCCcCH
Confidence 73 5566666665543 334444577999999955553 46889999999999953321 1 111
Q ss_pred HHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChh-hH-----HHHHHHHHHH
Q 010709 289 QIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSEN-EK-----VDRLLALLVE 362 (503)
Q Consensus 289 ~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~k-----~~~l~~~l~~ 362 (503)
.--.+++.-..++++|+-|||+.-+ .+..-.-+....+...............+..+... .+ ...++..+.+
T Consensus 338 RdvA~~Ra~~~~~pvvLgSATPSLE--S~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~ 415 (730)
T COG1198 338 RDVAVLRAKKENAPVVLGSATPSLE--SYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRK 415 (730)
T ss_pred HHHHHHHHHHhCCCEEEecCCCCHH--HHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHH
Confidence 1222333334567899999999543 33333223233343333322221222233333222 11 1456666655
Q ss_pred HHHhhhccCCCCCcEEEEEcchhhH-------------------------------------------------------
Q 010709 363 EAFLAEKSCHPFPLTIVFVERKTRC------------------------------------------------------- 387 (503)
Q Consensus 363 ~~~~~~~~~~~~~~~lIF~~~~~~~------------------------------------------------------- 387 (503)
....+ .++|+|+|.+..+
T Consensus 416 ~l~~g-------eQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~ 488 (730)
T COG1198 416 TLERG-------EQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRA 488 (730)
T ss_pred HHhcC-------CeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEE
Confidence 54433 3488888886533
Q ss_pred -----HHHHHHHHHC--CCeEEEEcCCCCHH--HHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCC-----
Q 010709 388 -----DEVSEALVAE--GLHAVALHGGRNQS--DRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPK----- 453 (503)
Q Consensus 388 -----~~l~~~L~~~--~~~v~~lh~~~~~~--~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~----- 453 (503)
+++++.|.+. +.++..+.++.+.. .-...++.|.+|+.+|||.|++++.|.|+|++..|...|.-.
T Consensus 489 ~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~ 568 (730)
T COG1198 489 VGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSP 568 (730)
T ss_pred ecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCC
Confidence 5666666554 56788888877643 356789999999999999999999999999999977655432
Q ss_pred -------ChhHHHHhhCcceee
Q 010709 454 -------VLLAASESLCTTSFN 468 (503)
Q Consensus 454 -------s~~~~~Qr~GR~gR~ 468 (503)
....+.|-.|||||.
T Consensus 569 DfRA~Er~fqll~QvaGRAgR~ 590 (730)
T COG1198 569 DFRASERTFQLLMQVAGRAGRA 590 (730)
T ss_pred CcchHHHHHHHHHHHHhhhccC
Confidence 225577888999995
No 121
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.87 E-value=2.5e-20 Score=168.40 Aligned_cols=188 Identities=44% Similarity=0.608 Sum_probs=152.2
Q ss_pred HCCCCCCcHHHHHHHHHHhcC-CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q 010709 138 FHEYTRPTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (503)
Q Consensus 138 ~~~~~~~~~~Q~~~i~~i~~~-~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 216 (503)
.+++..++++|.+++..+.++ ++++++++||+|||.++..+++..+...+ ..+++|++|++.++.|+.+.+..
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~------~~~~l~~~p~~~~~~~~~~~~~~ 76 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK------GKRVLVLVPTRELAEQWAEELKK 76 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC------CCcEEEEeCCHHHHHHHHHHHHH
Confidence 346788999999999999988 99999999999999988787777655421 46799999999999999999998
Q ss_pred HhccCCCceEEEEECCccHHHHHHHhhCCC-cEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHH
Q 010709 217 LSRSLDSFKTAIVVGGTNIAEQRSELRGGV-SIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ 295 (503)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~ 295 (503)
++.... .......++............+. +++++|++.+.+.+.........++++|+||+|++....+...+..++.
T Consensus 77 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~ 155 (201)
T smart00487 77 LGPSLG-LKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLK 155 (201)
T ss_pred HhccCC-eEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHH
Confidence 875432 23444555555344444455555 9999999999999988666778899999999999886567888899998
Q ss_pred hCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCC
Q 010709 296 NLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGK 332 (503)
Q Consensus 296 ~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 332 (503)
.+++..+++++|||+++........++.+...+....
T Consensus 156 ~~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 156 LLPKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred hCCccceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 8878889999999999999999998888776665543
No 122
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=1.4e-19 Score=188.16 Aligned_cols=115 Identities=17% Similarity=0.150 Sum_probs=100.6
Q ss_pred EEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCC
Q 010709 345 EKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGS 424 (503)
Q Consensus 345 ~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~ 424 (503)
++.....|...+...+..... .+.++||||++++.++.+++.|...|+.+..+|+ .+.+|+..+..|..+.
T Consensus 576 vy~t~~eK~~Ali~~I~~~~~-------~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~ 646 (1025)
T PRK12900 576 VYKTRREKYNAIVLKVEELQK-------KGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQK 646 (1025)
T ss_pred EecCHHHHHHHHHHHHHHHhh-------CCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCC
Confidence 445566788888888866542 3447999999999999999999999999999997 6889999999999999
Q ss_pred CcEEEEccccccCCCCC---CCC-----EEEEccCCCChhHHHHhhCcceee
Q 010709 425 TNILVATDVASRGLDVM---GVA-----HVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 425 ~~vLvaT~~~~~Gldip---~v~-----~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
..|+|||++++||+||+ +|. +||++..|.+...|.||+||+||.
T Consensus 647 g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRq 698 (1025)
T PRK12900 647 GAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQ 698 (1025)
T ss_pred CeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcC
Confidence 99999999999999999 554 459999999999999999999994
No 123
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.84 E-value=2.2e-19 Score=179.21 Aligned_cols=304 Identities=17% Similarity=0.185 Sum_probs=204.1
Q ss_pred CCcHHHHHHHHHHh----cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q 010709 143 RPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (503)
Q Consensus 143 ~~~~~Q~~~i~~i~----~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 218 (503)
.+.++|++++.++. ++.-.|+...+|.|||++. +.+|..+...... -+.+|||||. .+..||..+|+.|.
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQi-isFLaaL~~S~k~----~~paLIVCP~-Tii~qW~~E~~~w~ 278 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQI-ISFLAALHHSGKL----TKPALIVCPA-TIIHQWMKEFQTWW 278 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhH-HHHHHHHhhcccc----cCceEEEccH-HHHHHHHHHHHHhC
Confidence 46788999999986 3456899999999999875 4455555544211 2568999998 57788999999987
Q ss_pred ccCCCceEEEEECCccH--------HHHH-----HHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCC
Q 010709 219 RSLDSFKTAIVVGGTNI--------AEQR-----SELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG 285 (503)
Q Consensus 219 ~~~~~~~~~~~~~~~~~--------~~~~-----~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~ 285 (503)
. .+++.++++.... ...+ +......+|+++|++.+.- ....+.-..+.++|+||.|++-+.
T Consensus 279 p---~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~--~~d~l~~~~W~y~ILDEGH~IrNp- 352 (923)
T KOG0387|consen 279 P---PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRI--QGDDLLGILWDYVILDEGHRIRNP- 352 (923)
T ss_pred c---ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcc--cCcccccccccEEEecCcccccCC-
Confidence 4 4778888876552 0111 1112346799999877742 122344456899999999998776
Q ss_pred CHHHHHHHHHhCCCCCcEEEEEeeC-CHHHHHHHH---------------------------------------------
Q 010709 286 FEPQIREVMQNLPDKHQTLLFSATM-PVEIEALAQ--------------------------------------------- 319 (503)
Q Consensus 286 ~~~~~~~il~~~~~~~q~i~~SAT~-~~~~~~~~~--------------------------------------------- 319 (503)
...+...+..++... .|++|+|| .+++.++..
T Consensus 353 -ns~islackki~T~~-RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~ 430 (923)
T KOG0387|consen 353 -NSKISLACKKIRTVH-RIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAV 430 (923)
T ss_pred -ccHHHHHHHhccccc-eEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHH
Confidence 344555666665544 46677776 112221110
Q ss_pred -------Hh-------------------------------------c----------CCCeEE-----------E---eC
Q 010709 320 -------EY-------------------------------------L----------TDPVQV-----------K---VG 331 (503)
Q Consensus 320 -------~~-------------------------------------~----------~~~~~~-----------~---~~ 331 (503)
-| + +++... + ..
T Consensus 431 ~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~ 510 (923)
T KOG0387|consen 431 ALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLD 510 (923)
T ss_pred HHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCccccc
Confidence 00 0 000000 0 00
Q ss_pred CCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHH-HCCCeEEEEcCCCCH
Q 010709 332 KVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALV-AEGLHAVALHGGRNQ 410 (503)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~-~~~~~v~~lh~~~~~ 410 (503)
........-..+.-..+...|+..+.+++.....+ +.++|+|..++...+.|..+|. ..|+.++.+.|..+.
T Consensus 511 ~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kq-------g~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~ 583 (923)
T KOG0387|consen 511 RRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQ-------GDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPA 583 (923)
T ss_pred CcccccccCCCcCCChhhcchHHHHHHHHHHHhhC-------CCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCcc
Confidence 00000000000112234456777777777766543 4469999999999999999998 689999999999999
Q ss_pred HHHHHHHHHHhcCCC-c-EEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCccee
Q 010709 411 SDRESALRDFRNGST-N-ILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSF 467 (503)
Q Consensus 411 ~~r~~~~~~f~~g~~-~-vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR 467 (503)
..|..+++.|.+++. . .|++|.+.+-|+|+.+++-||.||+-+++..=.|-.-||-|
T Consensus 584 ~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawR 642 (923)
T KOG0387|consen 584 ALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWR 642 (923)
T ss_pred chhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHh
Confidence 999999999998763 3 57889999999999999999999999998666664444444
No 124
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.84 E-value=8.1e-19 Score=183.80 Aligned_cols=112 Identities=22% Similarity=0.295 Sum_probs=99.7
Q ss_pred hhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEE
Q 010709 350 NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILV 429 (503)
Q Consensus 350 ~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLv 429 (503)
..++..++..+..... ...++||||++++.++.+++.|...|+.+..+||++++.+|..+++.|+.|++.|+|
T Consensus 429 ~~q~~~L~~~L~~~~~-------~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV 501 (652)
T PRK05298 429 KGQVDDLLSEIRKRVA-------KGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLV 501 (652)
T ss_pred cccHHHHHHHHHHHHh-------CCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEE
Confidence 3455666666655432 344699999999999999999999999999999999999999999999999999999
Q ss_pred EccccccCCCCCCCCEEEEccC-----CCChhHHHHhhCcceee
Q 010709 430 ATDVASRGLDVMGVAHVVNLDL-----PKVLLAASESLCTTSFN 468 (503)
Q Consensus 430 aT~~~~~Gldip~v~~VI~~~~-----p~s~~~~~Qr~GR~gR~ 468 (503)
||+++++|+|+|++++||++|. |.+..+|+||+||+||.
T Consensus 502 ~t~~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~ 545 (652)
T PRK05298 502 GINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 (652)
T ss_pred EeCHHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC
Confidence 9999999999999999999875 78999999999999995
No 125
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=6.8e-20 Score=176.04 Aligned_cols=315 Identities=12% Similarity=0.032 Sum_probs=220.3
Q ss_pred HHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q 010709 137 EFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (503)
Q Consensus 137 ~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 216 (503)
+.+.-...+.+|.+++..+.+|+++++.-.|.+||.++|.+........-+ ....+++.|+.++++...+-+.-
T Consensus 280 ~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~------~s~~~~~~~~~~~~~~~~~~~~V 353 (1034)
T KOG4150|consen 280 NKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCH------ATNSLLPSEMVEHLRNGSKGQVV 353 (1034)
T ss_pred hcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCc------ccceecchhHHHHhhccCCceEE
Confidence 445556778999999999999999999999999999999988877655532 34578999999998765543332
Q ss_pred HhccCCC--ceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCC----CCCCccEEEecchhHHhhC---CCH
Q 010709 217 LSRSLDS--FKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT----SLSRVSFVILDEADRMLDM---GFE 287 (503)
Q Consensus 217 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~----~l~~~~~vViDEaH~l~~~---~~~ 287 (503)
.....+. -.++-.+.+....+.....+.+.+++++.|......+..+.. .+-...++++||+|-.... ...
T Consensus 354 ~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~ 433 (1034)
T KOG4150|consen 354 HVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQ 433 (1034)
T ss_pred EEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHH
Confidence 2211111 224445566666666666778899999999988665554332 3445678999999954332 122
Q ss_pred HHHHHHHHhC-----CCCCcEEEEEeeCCHHHHHHHHHhcCCCeE-EEeCCCCCCCCceEEEEEEc---------ChhhH
Q 010709 288 PQIREVMQNL-----PDKHQTLLFSATMPVEIEALAQEYLTDPVQ-VKVGKVSSPTANVIQILEKV---------SENEK 352 (503)
Q Consensus 288 ~~~~~il~~~-----~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------~~~~k 352 (503)
.+++++++.+ ..+.|++-.+||+...++..-..+-.+.+. ++.+..+. .-...+..- +...+
T Consensus 434 ~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs---~~K~~V~WNP~~~P~~~~~~~~~ 510 (1034)
T KOG4150|consen 434 DQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPS---SEKLFVLWNPSAPPTSKSEKSSK 510 (1034)
T ss_pred HHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCC---ccceEEEeCCCCCCcchhhhhhH
Confidence 3344444333 347889999999977776544444333332 22222211 111122111 22345
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHC----C----CeEEEEcCCCCHHHHHHHHHHHhcCC
Q 010709 353 VDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE----G----LHAVALHGGRNQSDRESALRDFRNGS 424 (503)
Q Consensus 353 ~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~----~----~~v~~lh~~~~~~~r~~~~~~f~~g~ 424 (503)
+.+..+++.+...... ++|.||..++.|+.+....+.. + -.+..+.||...++|.++....--|+
T Consensus 511 i~E~s~~~~~~i~~~~-------R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~ 583 (1034)
T KOG4150|consen 511 VVEVSHLFAEMVQHGL-------RCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGK 583 (1034)
T ss_pred HHHHHHHHHHHHHcCC-------cEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCe
Confidence 5555555555443333 4999999999999887665542 2 14667899999999999999999999
Q ss_pred CcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCccee
Q 010709 425 TNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSF 467 (503)
Q Consensus 425 ~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR 467 (503)
..-+|||++++.||||.+++.|+++++|.|++++.|+.|||||
T Consensus 584 L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGR 626 (1034)
T KOG4150|consen 584 LCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGR 626 (1034)
T ss_pred eeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999
No 126
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.82 E-value=3.6e-19 Score=168.62 Aligned_cols=304 Identities=16% Similarity=0.177 Sum_probs=196.9
Q ss_pred CCCcHHHHHHHHHHh-cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhcc
Q 010709 142 TRPTSIQAQAMPVAL-SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (503)
Q Consensus 142 ~~~~~~Q~~~i~~i~-~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~ 220 (503)
..+.|+|.+.+...+ .|..+++...+|.|||++++..+-.+...+ -.||+||.. +--.|++.+..|...
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraEw---------plliVcPAs-vrftWa~al~r~lps 266 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAEW---------PLLIVCPAS-VRFTWAKALNRFLPS 266 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhcC---------cEEEEecHH-HhHHHHHHHHHhccc
Confidence 456888999998766 567899999999999999854433333332 279999985 445699999999866
Q ss_pred CCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhCCCC
Q 010709 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDK 300 (503)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~ 300 (503)
... +.++.++.+... .+.....|.|++++.+..+-. .+.-.++++||+||.|++-+.. ....+.++..+...
T Consensus 267 ~~p--i~vv~~~~D~~~---~~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~a 338 (689)
T KOG1000|consen 267 IHP--IFVVDKSSDPLP---DVCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVA 338 (689)
T ss_pred ccc--eEEEecccCCcc---ccccCCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhccc-hhhhhhhhhHHHHh
Confidence 543 444555443221 123346788999988865433 3344569999999999776542 33355555555556
Q ss_pred CcEEEEEeeC----CHHHH---------------HHHHHhcC-CCeEEEeCCC---------------------------
Q 010709 301 HQTLLFSATM----PVEIE---------------ALAQEYLT-DPVQVKVGKV--------------------------- 333 (503)
Q Consensus 301 ~q~i~~SAT~----~~~~~---------------~~~~~~~~-~~~~~~~~~~--------------------------- 333 (503)
.++|++|+|+ |.++. ++...|-. .-+.+..+..
T Consensus 339 khvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~ 418 (689)
T KOG1000|consen 339 KHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLK 418 (689)
T ss_pred hheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6799999998 22111 11111110 0000000000
Q ss_pred CCCCCceEEEEEEcC---------------------hh----------------hHHHHHHHHHHHHHHhhhccCCCCCc
Q 010709 334 SSPTANVIQILEKVS---------------------EN----------------EKVDRLLALLVEEAFLAEKSCHPFPL 376 (503)
Q Consensus 334 ~~~~~~~~~~~~~~~---------------------~~----------------~k~~~l~~~l~~~~~~~~~~~~~~~~ 376 (503)
..+.. -.+.+.... .. .|.......+..+... ...+..|
T Consensus 419 qLPpK-rr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l---~d~~~~K 494 (689)
T KOG1000|consen 419 QLPPK-RREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFL---PDAPPRK 494 (689)
T ss_pred hCCcc-ceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCccc---ccCCCce
Confidence 00111 111111110 00 0111111111111000 2245678
Q ss_pred EEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCC-Cc-EEEEccccccCCCCCCCCEEEEccCCCC
Q 010709 377 TIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGS-TN-ILVATDVASRGLDVMGVAHVVNLDLPKV 454 (503)
Q Consensus 377 ~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~-~~-vLvaT~~~~~Gldip~v~~VI~~~~p~s 454 (503)
++|||......+.+...+.++++..+.+.|..+..+|....+.|+..+ +. .+++..+++.|+|+...+.||+..++++
T Consensus 495 flVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wn 574 (689)
T KOG1000|consen 495 FLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWN 574 (689)
T ss_pred EEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCC
Confidence 999999999999999999999999999999999999999999998754 44 4667789999999999999999999998
Q ss_pred h------hHHHHhhCccee
Q 010709 455 L------LAASESLCTTSF 467 (503)
Q Consensus 455 ~------~~~~Qr~GR~gR 467 (503)
+ ++.+||+|...-
T Consensus 575 PgvLlQAEDRaHRiGQkss 593 (689)
T KOG1000|consen 575 PGVLLQAEDRAHRIGQKSS 593 (689)
T ss_pred CceEEechhhhhhccccce
Confidence 6 778888888654
No 127
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=7.8e-18 Score=170.52 Aligned_cols=302 Identities=21% Similarity=0.186 Sum_probs=208.9
Q ss_pred CCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccC
Q 010709 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (503)
Q Consensus 142 ~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~ 221 (503)
..|++.|.-+...+++|+ |..+.||.|||+++.+|++...+. |..+-|++|+..||.|-++.+..+...+
T Consensus 77 ~r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~--------G~~VhvvT~NdyLA~RDae~m~~ly~~L 146 (764)
T PRK12326 77 LRPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ--------GRRVHVITVNDYLARRDAEWMGPLYEAL 146 (764)
T ss_pred CCcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc--------CCCeEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 379999999998888774 679999999999999998877655 6779999999999999999999998877
Q ss_pred CCceEEEEECCccHHHHHHHhhCCCcEEEECcHHH-HHHHHc------CCCCCCCccEEEecchhHHh-hC---------
Q 010709 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQ------GNTSLSRVSFVILDEADRML-DM--------- 284 (503)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~------~~~~l~~~~~vViDEaH~l~-~~--------- 284 (503)
++.++++.++....+... ...++|+++|..-| .+.+.. .......+.++||||+|.++ +.
T Consensus 147 -GLsvg~i~~~~~~~err~--aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg 223 (764)
T PRK12326 147 -GLTVGWITEESTPEERRA--AYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAG 223 (764)
T ss_pred -CCEEEEECCCCCHHHHHH--HHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeC
Confidence 599999988877554333 34589999998776 222221 12234668899999999622 00
Q ss_pred -----CCHHHHHHHHHhCC---------------------------------------------------------CC--
Q 010709 285 -----GFEPQIREVMQNLP---------------------------------------------------------DK-- 300 (503)
Q Consensus 285 -----~~~~~~~~il~~~~---------------------------------------------------------~~-- 300 (503)
.....+.++...+. .+
T Consensus 224 ~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~d 303 (764)
T PRK12326 224 STPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVH 303 (764)
T ss_pred CCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCc
Confidence 00000001111000 00
Q ss_pred -----------------------------------------------------------CcEEEEEeeCCHHHHHHHHHh
Q 010709 301 -----------------------------------------------------------HQTLLFSATMPVEIEALAQEY 321 (503)
Q Consensus 301 -----------------------------------------------------------~q~i~~SAT~~~~~~~~~~~~ 321 (503)
.++-+||+|.......+.+-|
T Consensus 304 YiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY 383 (764)
T PRK12326 304 YIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFY 383 (764)
T ss_pred EEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHh
Confidence 146778888766555544444
Q ss_pred cCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeE
Q 010709 322 LTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHA 401 (503)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v 401 (503)
-- .+.+.....+.. ..............|...+...+..... .+.|+||.+.+.+..+.+++.|.+.|++.
T Consensus 384 ~l-~Vv~IPtnkp~~-R~d~~d~iy~t~~~k~~Aii~ei~~~~~-------~GrPVLVgt~sI~~SE~ls~~L~~~gI~h 454 (764)
T PRK12326 384 DL-GVSVIPPNKPNI-REDEADRVYATAAEKNDAIVEHIAEVHE-------TGQPVLVGTHDVAESEELAERLRAAGVPA 454 (764)
T ss_pred CC-cEEECCCCCCce-eecCCCceEeCHHHHHHHHHHHHHHHHH-------cCCCEEEEeCCHHHHHHHHHHHHhCCCcc
Confidence 33 322211111111 1111223444567788888777766543 34479999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCC-CcEEEEccccccCCCCCC---------------CCEEEEccCCCChhHHHHhhCcc
Q 010709 402 VALHGGRNQSDRESALRDFRNGS-TNILVATDVASRGLDVMG---------------VAHVVNLDLPKVLLAASESLCTT 465 (503)
Q Consensus 402 ~~lh~~~~~~~r~~~~~~f~~g~-~~vLvaT~~~~~Gldip~---------------v~~VI~~~~p~s~~~~~Qr~GR~ 465 (503)
..+++.....|- +++. +.|+ -.|-|||++++||-||.- ==|||-...+.|...-.|-.||+
T Consensus 455 ~vLNAk~~~~EA-~IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRa 531 (764)
T PRK12326 455 VVLNAKNDAEEA-RIIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRA 531 (764)
T ss_pred eeeccCchHhHH-HHHH--hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhccc
Confidence 999887554442 3332 3454 569999999999999872 23799999999998889999999
Q ss_pred eee
Q 010709 466 SFN 468 (503)
Q Consensus 466 gR~ 468 (503)
||.
T Consensus 532 GRQ 534 (764)
T PRK12326 532 GRQ 534 (764)
T ss_pred ccC
Confidence 995
No 128
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.81 E-value=4.5e-18 Score=169.68 Aligned_cols=329 Identities=18% Similarity=0.185 Sum_probs=209.9
Q ss_pred CCcHHHHHHHHHHh----cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q 010709 143 RPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (503)
Q Consensus 143 ~~~~~Q~~~i~~i~----~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 218 (503)
++-++|.-.+.++. ++-+.|+..++|.|||.+. ++.|.++...+ .+|| -|||||...|-+ |.++|.+|+
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQv-IaFlayLkq~g----~~gp-HLVVvPsSTleN-WlrEf~kwC 471 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQV-IAFLAYLKQIG----NPGP-HLVVVPSSTLEN-WLREFAKWC 471 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhHH-HHHHHHHHHcC----CCCC-cEEEecchhHHH-HHHHHHHhC
Confidence 37889999999865 4446899999999999875 66777776653 2344 499999998877 888899988
Q ss_pred ccCCCceEEEEECCccHHHHHHHhh----CCCcEEEECcHHHHHHHH-cCCCCCCCccEEEecchhHHhhCCCHHHHHHH
Q 010709 219 RSLDSFKTAIVVGGTNIAEQRSELR----GGVSIVVATPGRFLDHLQ-QGNTSLSRVSFVILDEADRMLDMGFEPQIREV 293 (503)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~Tp~~l~~~l~-~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~i 293 (503)
. .+++..++|....+...+..- .+.+|+++|+.....--. +.-+.-.++.++|+||+|.+-+.. ...+..+
T Consensus 472 P---sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~L 547 (941)
T KOG0389|consen 472 P---SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHL 547 (941)
T ss_pred C---ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHh
Confidence 4 578899999886555443332 368999999876631111 112335678999999999776653 2334444
Q ss_pred HHhCCCCCcEEEEEeeCC-HHHHHHHH---------------------------------------------H-------
Q 010709 294 MQNLPDKHQTLLFSATMP-VEIEALAQ---------------------------------------------E------- 320 (503)
Q Consensus 294 l~~~~~~~q~i~~SAT~~-~~~~~~~~---------------------------------------------~------- 320 (503)
+.- +.+ +.+++|+||- +++.+++. .
T Consensus 548 M~I-~An-~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFIL 625 (941)
T KOG0389|consen 548 MSI-NAN-FRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFIL 625 (941)
T ss_pred ccc-ccc-ceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHH
Confidence 433 233 3577788871 11111100 0
Q ss_pred ------hc----CCCeEEEe----------------------CCCCCC--CCc--e--------------EEEE------
Q 010709 321 ------YL----TDPVQVKV----------------------GKVSSP--TAN--V--------------IQIL------ 344 (503)
Q Consensus 321 ------~~----~~~~~~~~----------------------~~~~~~--~~~--~--------------~~~~------ 344 (503)
.+ .....+.. ...... ... + +.++
T Consensus 626 RR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~ 705 (941)
T KOG0389|consen 626 RRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLR 705 (941)
T ss_pred HHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHH
Confidence 00 00000000 000000 000 0 0000
Q ss_pred -------------------------------------------------EEcChhhHHHHHHHHHHHHHHhhhccCCCCC
Q 010709 345 -------------------------------------------------EKVSENEKVDRLLALLVEEAFLAEKSCHPFP 375 (503)
Q Consensus 345 -------------------------------------------------~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~ 375 (503)
...-...|...|..++.+... .+.
T Consensus 706 ~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~-------~G~ 778 (941)
T KOG0389|consen 706 KMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKK-------KGD 778 (941)
T ss_pred HHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhh-------cCC
Confidence 000112233344444433322 235
Q ss_pred cEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCC--CcEEEEccccccCCCCCCCCEEEEccCCC
Q 010709 376 LTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGS--TNILVATDVASRGLDVMGVAHVVNLDLPK 453 (503)
Q Consensus 376 ~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~--~~vLvaT~~~~~Gldip~v~~VI~~~~p~ 453 (503)
++|||.+--...+-|...|.-.++....+.|...-..|+.+++.|...+ .-.|++|.+++-|||+..+++||.+|..-
T Consensus 779 RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dF 858 (941)
T KOG0389|consen 779 RVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDF 858 (941)
T ss_pred EEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCC
Confidence 7999999999999999999999999999999999999999999998754 44689999999999999999999999865
Q ss_pred Ch------hHHHHhhCcc-----eeeeeecc--CchhhhhhHHHHHHHHHH
Q 010709 454 VL------LAASESLCTT-----SFNITTNL--DGDMKKLEFCLILAITVL 491 (503)
Q Consensus 454 s~------~~~~Qr~GR~-----gR~~~~~~--~~~~~~~~~~~~~~~~~~ 491 (503)
++ ++..||+|.. -|.+.... ++..+-....+.++.+++
T Consensus 859 NP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt 909 (941)
T KOG0389|consen 859 NPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLT 909 (941)
T ss_pred CCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhc
Confidence 54 6777888873 33333333 244444444555555543
No 129
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.81 E-value=2.9e-17 Score=175.69 Aligned_cols=329 Identities=17% Similarity=0.168 Sum_probs=194.4
Q ss_pred CCcHHHHHHHHHHh----cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHH-HHHHHHH
Q 010709 143 RPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI-EKEVKAL 217 (503)
Q Consensus 143 ~~~~~Q~~~i~~i~----~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~-~~~~~~~ 217 (503)
.+++-|.+....+. +++.+++.|+||+|||++|++|++... .+.++||++||++|+.|+ .+.+..+
T Consensus 245 e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~---------~~~~vvI~t~T~~Lq~Ql~~~~i~~l 315 (820)
T PRK07246 245 EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS---------DQRQIIVSVPTKILQDQIMAEEVKAI 315 (820)
T ss_pred ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc---------CCCcEEEEeCcHHHHHHHHHHHHHHH
Confidence 68999999665544 567799999999999999999988753 246799999999999999 4667766
Q ss_pred hccCCCceEEEEECCccHH---H--------------------------------------------HH-----------
Q 010709 218 SRSLDSFKTAIVVGGTNIA---E--------------------------------------------QR----------- 239 (503)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~---~--------------------------------------------~~----------- 239 (503)
.+.. ++++.++.|+...- . .+
T Consensus 316 ~~~~-~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~ 394 (820)
T PRK07246 316 QEVF-HIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQ 394 (820)
T ss_pred HHhc-CCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCC
Confidence 6554 35666666533210 0 00
Q ss_pred -------------HHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCC-----CH-------HH-----
Q 010709 240 -------------SELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-----FE-------PQ----- 289 (503)
Q Consensus 240 -------------~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~-----~~-------~~----- 289 (503)
+.....++|+|+.-..|...+.... .+..++++||||||++.+.. .. ..
T Consensus 395 ~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~ 473 (820)
T PRK07246 395 SSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKAL 473 (820)
T ss_pred CCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHH
Confidence 0011246899999888777664432 36789999999999854310 00 00
Q ss_pred --------------------------------------H------------------HHHHHhC----------------
Q 010709 290 --------------------------------------I------------------REVMQNL---------------- 297 (503)
Q Consensus 290 --------------------------------------~------------------~~il~~~---------------- 297 (503)
+ ..++..-
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~ 553 (820)
T PRK07246 474 SGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRV 553 (820)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCcce
Confidence 0 0000000
Q ss_pred -----------------CCCCcEEEEEeeCC--HHHHHHHHHhcCC--CeEEEeCCCCCCCCceEEEEE--EcCh-----
Q 010709 298 -----------------PDKHQTLLFSATMP--VEIEALAQEYLTD--PVQVKVGKVSSPTANVIQILE--KVSE----- 349 (503)
Q Consensus 298 -----------------~~~~q~i~~SAT~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~----- 349 (503)
+....+|++|||++ +... + ...++- ....... .........+. .++.
T Consensus 554 ~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~-~-~~~lGl~~~~~~~~~---~~~~~~~~~~i~~~~p~~~~~~ 628 (820)
T PRK07246 554 TYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVS-L-ADLLGFEEYLFHKIE---KDKKQDQLVVVDQDMPLVTETS 628 (820)
T ss_pred eEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCc-H-HHHcCCCccceecCC---CChHHccEEEeCCCCCCCCCCC
Confidence 00135788888885 2222 3 222231 1111111 11111111111 1121
Q ss_pred -hhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEE
Q 010709 350 -NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNIL 428 (503)
Q Consensus 350 -~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vL 428 (503)
......+...+.... ...++++|+++|.+..+.+++.|....+.+ ...|... .+.+++++|++++..||
T Consensus 629 ~~~~~~~~~~~i~~~~-------~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vL 698 (820)
T PRK07246 629 DEVYAEEIAKRLEELK-------QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQIL 698 (820)
T ss_pred hHHHHHHHHHHHHHHH-------hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEE
Confidence 222233444443221 134679999999999999999997665544 4444222 24668999999989999
Q ss_pred EEccccccCCCCCC--CCEEEEccCCC----Ch-----hHHHHhhCc------------------ceeeeeeccC-chhh
Q 010709 429 VATDVASRGLDVMG--VAHVVNLDLPK----VL-----LAASESLCT------------------TSFNITTNLD-GDMK 478 (503)
Q Consensus 429 vaT~~~~~Gldip~--v~~VI~~~~p~----s~-----~~~~Qr~GR------------------~gR~~~~~~~-~~~~ 478 (503)
++|..+.+|||+|+ ...||...+|- ++ .+|..+-|+ +||.+.+..| |.+.
T Consensus 699 lG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ 778 (820)
T PRK07246 699 LGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVL 778 (820)
T ss_pred EecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEE
Confidence 99999999999974 56677777662 21 233333343 4566666666 5555
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 010709 479 KLEFCLILAITVLLFVIFL 497 (503)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~ 497 (503)
-++.-+.--.+..+|...|
T Consensus 779 ilD~R~~~k~Yg~~~l~sL 797 (820)
T PRK07246 779 ILDRRILTKSYGKQILASL 797 (820)
T ss_pred EECCcccccHHHHHHHHhC
Confidence 5555544334444444433
No 130
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.80 E-value=2.9e-17 Score=168.95 Aligned_cols=154 Identities=18% Similarity=0.269 Sum_probs=113.5
Q ss_pred CCcHHHHHHHHHHh----cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q 010709 143 RPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (503)
Q Consensus 143 ~~~~~Q~~~i~~i~----~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 218 (503)
.++.||...+.++. ++-|.|+..++|.|||++. +.+|.++.+... +.||. ||||||..+.+ |.-+|++|+
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQt-ISllAhLACeeg---nWGPH-LIVVpTsviLn-WEMElKRwc 688 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQT-ISLLAHLACEEG---NWGPH-LIVVPTSVILN-WEMELKRWC 688 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHH-HHHHHHHHhccc---CCCCc-eEEeechhhhh-hhHHHhhhC
Confidence 46777999999875 4457999999999999985 778888888643 33444 99999988877 899999998
Q ss_pred ccCCCceEEEEECCccHHHHHHHhhC---CCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHH
Q 010709 219 RSLDSFKTAIVVGGTNIAEQRSELRG---GVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ 295 (503)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~ 295 (503)
. ++++..++|........+.-+. ..||.|+++..+.+-+. .|...+|.|+|+||||++-++ -...|..++
T Consensus 689 P---glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~--AFkrkrWqyLvLDEaqnIKnf-ksqrWQAll- 761 (1958)
T KOG0391|consen 689 P---GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLT--AFKRKRWQYLVLDEAQNIKNF-KSQRWQALL- 761 (1958)
T ss_pred C---cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHH--HHHhhccceeehhhhhhhcch-hHHHHHHHh-
Confidence 5 5788899998876666655553 36899999888876655 466778999999999987654 122333333
Q ss_pred hCCCCCcEEEEEeeC
Q 010709 296 NLPDKHQTLLFSATM 310 (503)
Q Consensus 296 ~~~~~~q~i~~SAT~ 310 (503)
.++.. |.+++++|+
T Consensus 762 nfnsq-rRLLLtgTP 775 (1958)
T KOG0391|consen 762 NFNSQ-RRLLLTGTP 775 (1958)
T ss_pred ccchh-heeeecCCc
Confidence 33332 345666665
No 131
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.80 E-value=1e-19 Score=172.54 Aligned_cols=292 Identities=16% Similarity=0.141 Sum_probs=187.1
Q ss_pred CCCcHHHHHHHHHHhcC---CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q 010709 142 TRPTSIQAQAMPVALSG---RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (503)
Q Consensus 142 ~~~~~~Q~~~i~~i~~~---~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 218 (503)
..++|+|..++..+.-+ +..||+.|+|+|||++-+-+ .+.+ ++.+|+++.+-.-+.||..+|+.|.
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTA-a~ti----------kK~clvLcts~VSVeQWkqQfk~ws 369 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTA-ACTI----------KKSCLVLCTSAVSVEQWKQQFKQWS 369 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeee-eeee----------cccEEEEecCccCHHHHHHHHHhhc
Confidence 46899999999998843 46899999999999865332 2222 4569999999999999999999997
Q ss_pred ccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcC--------CCCCCCccEEEecchhHHhhCCCHHHH
Q 010709 219 RSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG--------NTSLSRVSFVILDEADRMLDMGFEPQI 290 (503)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~--------~~~l~~~~~vViDEaH~l~~~~~~~~~ 290 (503)
.- .+-.++..+.+. + .....++.|+|+|+.++..--.+. -+.-+.++++++||+|.+-..-|+..+
T Consensus 370 ti-~d~~i~rFTsd~-K----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVl 443 (776)
T KOG1123|consen 370 TI-QDDQICRFTSDA-K----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVL 443 (776)
T ss_pred cc-CccceEEeeccc-c----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHH
Confidence 43 233333333332 1 224567899999998874322211 123467999999999976544455444
Q ss_pred HHHHHhCCCCCcEEEEEeeCCHHHHHHHH-HhcCCCeEEEeCCCC----CCCCce-----------------------EE
Q 010709 291 REVMQNLPDKHQTLLFSATMPVEIEALAQ-EYLTDPVQVKVGKVS----SPTANV-----------------------IQ 342 (503)
Q Consensus 291 ~~il~~~~~~~q~i~~SAT~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~-----------------------~~ 342 (503)
..+-.+ + -+++|||+-++-..+.. .|+.-|.....+-.. .....+ ..
T Consensus 444 siv~aH----c-KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr 518 (776)
T KOG1123|consen 444 SIVQAH----C-KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKR 518 (776)
T ss_pred HHHHHH----h-hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhh
Confidence 444333 3 38999998443222211 111111111100000 000111 11
Q ss_pred EEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhc
Q 010709 343 ILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRN 422 (503)
Q Consensus 343 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~ 422 (503)
....+-...|.. .++++.+.+.+ .+.|+|||..+.-...+.+-.|.+ -.++|..+|.+|+++++.|+-
T Consensus 519 ~lLyvMNP~KFr-aCqfLI~~HE~------RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~ 586 (776)
T KOG1123|consen 519 MLLYVMNPNKFR-ACQFLIKFHER------RGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQT 586 (776)
T ss_pred heeeecCcchhH-HHHHHHHHHHh------cCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhccc
Confidence 122222333433 23333333322 345799999887665555555433 268999999999999999985
Q ss_pred -CCCcEEEEccccccCCCCCCCCEEEEccCC-CChhHHHHhhCccee
Q 010709 423 -GSTNILVATDVASRGLDVMGVAHVVNLDLP-KVLLAASESLCTTSF 467 (503)
Q Consensus 423 -g~~~vLvaT~~~~~Gldip~v~~VI~~~~p-~s~~~~~Qr~GR~gR 467 (503)
..++.++-..++.+++|+|.++++|+..-- .|..+=.||.||.=|
T Consensus 587 n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILR 633 (776)
T KOG1123|consen 587 NPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILR 633 (776)
T ss_pred CCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHH
Confidence 468899999999999999999999987653 467778899998655
No 132
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=3.1e-17 Score=170.28 Aligned_cols=302 Identities=20% Similarity=0.218 Sum_probs=204.8
Q ss_pred CCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccC
Q 010709 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (503)
Q Consensus 142 ~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~ 221 (503)
-.|+++|.-.--.+.+| -|..+.||.|||+++.+|++...+. |..+-|++|+..||.|-++.+..+...+
T Consensus 81 m~~ydVQliGg~~Lh~G--~iaEM~TGEGKTLvA~l~a~l~al~--------G~~VhvvT~ndyLA~RD~e~m~~l~~~l 150 (913)
T PRK13103 81 MRHFDVQLIGGMTLHEG--KIAEMRTGEGKTLVGTLAVYLNALS--------GKGVHVVTVNDYLARRDANWMRPLYEFL 150 (913)
T ss_pred CCcchhHHHhhhHhccC--ccccccCCCCChHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 47888888776666554 6779999999999999998876555 6779999999999999999999999877
Q ss_pred CCceEEEEECCccHHHHHHHhhCCCcEEEECcHHH-HHHHHcC------CCCCCCccEEEecchhHHh-hCC--------
Q 010709 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQG------NTSLSRVSFVILDEADRML-DMG-------- 285 (503)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~------~~~l~~~~~vViDEaH~l~-~~~-------- 285 (503)
++.+.++.++....+..... .++|+++|..-| .+.|..+ ......+.++||||+|.++ +..
T Consensus 151 -Gl~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg 227 (913)
T PRK13103 151 -GLSVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISG 227 (913)
T ss_pred -CCEEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecC
Confidence 59999998877665543333 499999998886 3333321 1123788999999999722 100
Q ss_pred --------------CHH------------------------------------HHHHHH---------------------
Q 010709 286 --------------FEP------------------------------------QIREVM--------------------- 294 (503)
Q Consensus 286 --------------~~~------------------------------------~~~~il--------------------- 294 (503)
+.. .+..++
T Consensus 228 ~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~ 307 (913)
T PRK13103 228 QAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLL 307 (913)
T ss_pred CCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHH
Confidence 000 000000
Q ss_pred -------Hh---CCCC-------------------------------------------------------------CcE
Q 010709 295 -------QN---LPDK-------------------------------------------------------------HQT 303 (503)
Q Consensus 295 -------~~---~~~~-------------------------------------------------------------~q~ 303 (503)
+. +..+ .++
T Consensus 308 ~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL 387 (913)
T PRK13103 308 THVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKL 387 (913)
T ss_pred HHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchh
Confidence 00 0000 145
Q ss_pred EEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcc
Q 010709 304 LLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVER 383 (503)
Q Consensus 304 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~ 383 (503)
-+||+|...+-..+.+-|-- .+.+.....+..... ..-.++.....|...+...+..... .+.|+||-+.+
T Consensus 388 sGMTGTa~te~~Ef~~iY~l-~Vv~IPTnkP~~R~D-~~d~vy~t~~eK~~Ai~~ei~~~~~-------~GrPVLVGT~S 458 (913)
T PRK13103 388 SGMTGTADTEAFEFRQIYGL-DVVVIPPNKPLARKD-FNDLVYLTAEEKYAAIITDIKECMA-------LGRPVLVGTAT 458 (913)
T ss_pred ccCCCCCHHHHHHHHHHhCC-CEEECCCCCCccccc-CCCeEEcCHHHHHHHHHHHHHHHHh-------CCCCEEEEeCC
Confidence 56677765554444444432 222212111111111 1223455667788888888776553 34479999999
Q ss_pred hhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCC-CcEEEEccccccCCCCC---------------------
Q 010709 384 KTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGS-TNILVATDVASRGLDVM--------------------- 441 (503)
Q Consensus 384 ~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~-~~vLvaT~~~~~Gldip--------------------- 441 (503)
.+..+.+++.|.+.|+..-.++......|-..+- +.|. -.|-|||++++||-||.
T Consensus 459 Ve~SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa---~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~ 535 (913)
T PRK13103 459 IETSEHMSNLLKKEGIEHKVLNAKYHEKEAEIIA---QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIA 535 (913)
T ss_pred HHHHHHHHHHHHHcCCcHHHhccccchhHHHHHH---cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHH
Confidence 9999999999999999887777765544433332 3553 57999999999999995
Q ss_pred ----------------CCCEEEEccCCCChhHHHHhhCcceee
Q 010709 442 ----------------GVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 442 ----------------~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
+==+||-...+.|..-=.|-.||+||.
T Consensus 536 ~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQ 578 (913)
T PRK13103 536 QIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQ 578 (913)
T ss_pred HHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccC
Confidence 123789999999998888999999994
No 133
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.77 E-value=2e-16 Score=162.09 Aligned_cols=317 Identities=15% Similarity=0.165 Sum_probs=195.7
Q ss_pred CCcHHHHHHHHHHhcC----------CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHH
Q 010709 143 RPTSIQAQAMPVALSG----------RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEK 212 (503)
Q Consensus 143 ~~~~~Q~~~i~~i~~~----------~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~ 212 (503)
.++|+|++++..+..+ .-+|++-.+|+|||+.. ++++..++.+.+.....-.+.|||+|. .|+.-|++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~-IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkk 315 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQC-ISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKK 315 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHH-HHHHHHHHHhCcCccccccccEEEccH-HHHHHHHH
Confidence 5789999999887632 23889999999999986 566666666543322233678999998 57788999
Q ss_pred HHHHHhccCCCceEEEEECCccH--HHHHHHh-----hCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCC
Q 010709 213 EVKALSRSLDSFKTAIVVGGTNI--AEQRSEL-----RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG 285 (503)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~ 285 (503)
+|.+|.... .+....+++.... ......+ .-..-|++-+.+.+.+... .+....++++|+||.|++-+.
T Consensus 316 EF~KWl~~~-~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~--~il~~~~glLVcDEGHrlkN~- 391 (776)
T KOG0390|consen 316 EFGKWLGNH-RINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCR--KILLIRPGLLVCDEGHRLKNS- 391 (776)
T ss_pred HHHHhcccc-ccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH--HHhcCCCCeEEECCCCCccch-
Confidence 999998542 3555666666553 0000111 1124577788888876655 355778999999999987665
Q ss_pred CHHHHHHHHHhCCCCCcEEEEEeeCC-HHHHHHHHH-----------------hcCCC----------------------
Q 010709 286 FEPQIREVMQNLPDKHQTLLFSATMP-VEIEALAQE-----------------YLTDP---------------------- 325 (503)
Q Consensus 286 ~~~~~~~il~~~~~~~q~i~~SAT~~-~~~~~~~~~-----------------~~~~~---------------------- 325 (503)
...+.+.+..+.-++ -|++|+||= +++.++..- .+..|
T Consensus 392 -~s~~~kaL~~l~t~r-RVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~e 469 (776)
T KOG0390|consen 392 -DSLTLKALSSLKTPR-RVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQE 469 (776)
T ss_pred -hhHHHHHHHhcCCCc-eEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHH
Confidence 555677777776655 578899981 122211100 00000
Q ss_pred --------eEEEeC-CCCCCCCceEEEEEEcChhhHHHHHHHHHHHHH---------H-----hhhccCCC---------
Q 010709 326 --------VQVKVG-KVSSPTANVIQILEKVSENEKVDRLLALLVEEA---------F-----LAEKSCHP--------- 373 (503)
Q Consensus 326 --------~~~~~~-~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~---------~-----~~~~~~~~--------- 373 (503)
+..+.+ ......+....++..+.....-..++..+.... . ......+|
T Consensus 470 L~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~ 549 (776)
T KOG0390|consen 470 LRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKT 549 (776)
T ss_pred HHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccccc
Confidence 000001 011112222233333332222222221111110 0 00000000
Q ss_pred -----------------------------------------CCcEEEEE----cchhhHHHHHHHHHHCCCeEEEEcCCC
Q 010709 374 -----------------------------------------FPLTIVFV----ERKTRCDEVSEALVAEGLHAVALHGGR 408 (503)
Q Consensus 374 -----------------------------------------~~~~lIF~----~~~~~~~~l~~~L~~~~~~v~~lh~~~ 408 (503)
..++++|+ |.+...+.+...++-.|+.++.+||.+
T Consensus 550 ~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~ 629 (776)
T KOG0390|consen 550 EKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKT 629 (776)
T ss_pred cccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCC
Confidence 01233333 334444555555555699999999999
Q ss_pred CHHHHHHHHHHHhcCC---CcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCccee
Q 010709 409 NQSDRESALRDFRNGS---TNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSF 467 (503)
Q Consensus 409 ~~~~r~~~~~~f~~g~---~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR 467 (503)
+..+|+.+++.|.+.. .-.|.+|.+.+.||++-+++.||.||+.++++.=.|.+.||-|
T Consensus 630 ~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~R 691 (776)
T KOG0390|consen 630 SIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWR 691 (776)
T ss_pred chHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhcc
Confidence 9999999999998743 3356677899999999999999999999999999999999888
No 134
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.77 E-value=1.8e-17 Score=171.99 Aligned_cols=312 Identities=18% Similarity=0.226 Sum_probs=196.7
Q ss_pred CCcHHHHHHHHHHh--c--CCCeEEEccCCCchhHHhHHHHHHHHHhcC--CCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q 010709 143 RPTSIQAQAMPVAL--S--GRDLLGCAETGSGKTAAFTIPMIQHCVAQT--PVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (503)
Q Consensus 143 ~~~~~Q~~~i~~i~--~--~~~vii~~~TGsGKTl~~~lp~l~~~~~~~--~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 216 (503)
.++.+|++.+.++. + +=+.|+|..+|.|||++.+ -+++.-...+ ..........|||||. .|+-.|..++++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQti-cilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~k 1052 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTI-CILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKK 1052 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHH-HHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHH
Confidence 35888999998865 3 2368999999999999863 3443322222 1111223347999998 699999999999
Q ss_pred HhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHh
Q 010709 217 LSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN 296 (503)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~ 296 (503)
|+.. +++..+.|+...+...+..-++.+|+|+.++.+.+-+.. +.-..+.|+|+||-|-+-+. ...+.+.++.
T Consensus 1053 f~pf---L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~--ktkl~kavkq 1125 (1549)
T KOG0392|consen 1053 FFPF---LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQ 1125 (1549)
T ss_pred hcch---hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecch--HHHHHHHHHH
Confidence 9865 566667777666655555556789999999998644332 22346789999999976544 5567777777
Q ss_pred CCCCCcEEEEEeeCC-HHHHHHH---------------------------------------------------------
Q 010709 297 LPDKHQTLLFSATMP-VEIEALA--------------------------------------------------------- 318 (503)
Q Consensus 297 ~~~~~q~i~~SAT~~-~~~~~~~--------------------------------------------------------- 318 (503)
++...+ +++|+||- +++.++.
T Consensus 1126 L~a~hR-LILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~L 1204 (1549)
T KOG0392|consen 1126 LRANHR-LILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLL 1204 (1549)
T ss_pred Hhhcce-EEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHH
Confidence 776664 66788871 1111110
Q ss_pred ----------------HHhc---------------CC---CeEEEeCCCCCCCC----ceEE------------EEEE--
Q 010709 319 ----------------QEYL---------------TD---PVQVKVGKVSSPTA----NVIQ------------ILEK-- 346 (503)
Q Consensus 319 ----------------~~~~---------------~~---~~~~~~~~~~~~~~----~~~~------------~~~~-- 346 (503)
+.|+ .. -+.-..+....... .+.| ..+.
T Consensus 1205 RRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~ 1284 (1549)
T KOG0392|consen 1205 RRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTP 1284 (1549)
T ss_pred HHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCC
Confidence 0000 00 00000000000000 0000 0000
Q ss_pred ---------------------cChhhHHHHHHHHHHHHHHhhhc-------cCCCCCcEEEEEcchhhHHHHHHHHHHC-
Q 010709 347 ---------------------VSENEKVDRLLALLVEEAFLAEK-------SCHPFPLTIVFVERKTRCDEVSEALVAE- 397 (503)
Q Consensus 347 ---------------------~~~~~k~~~l~~~l~~~~~~~~~-------~~~~~~~~lIF~~~~~~~~~l~~~L~~~- 397 (503)
+...-|+..|.+++.+=...... .....+++||||+-+...+.+.+-|.+.
T Consensus 1285 ~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~ 1364 (1549)
T KOG0392|consen 1285 VHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKY 1364 (1549)
T ss_pred CcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhh
Confidence 01122333333333221111000 0013468999999999999999888765
Q ss_pred --CCeEEEEcCCCCHHHHHHHHHHHhcC-CCcEE-EEccccccCCCCCCCCEEEEccCCCChhHHHHhhCc
Q 010709 398 --GLHAVALHGGRNQSDRESALRDFRNG-STNIL-VATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCT 464 (503)
Q Consensus 398 --~~~v~~lh~~~~~~~r~~~~~~f~~g-~~~vL-vaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR 464 (503)
.+....+.|..++.+|+++.++|.++ .++|| ++|.+++-|+|+.++++||+++--+++..=.|-+-|
T Consensus 1365 mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDR 1435 (1549)
T KOG0392|consen 1365 MPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDR 1435 (1549)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHH
Confidence 34456899999999999999999998 78876 566899999999999999999999887444443333
No 135
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.75 E-value=4.2e-16 Score=169.95 Aligned_cols=81 Identities=21% Similarity=0.221 Sum_probs=63.7
Q ss_pred CCCcEEEEEcchhhHHHHHHHHHHCCC--eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCC--CCEEEE
Q 010709 373 PFPLTIVFVERKTRCDEVSEALVAEGL--HAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMG--VAHVVN 448 (503)
Q Consensus 373 ~~~~~lIF~~~~~~~~~l~~~L~~~~~--~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~--v~~VI~ 448 (503)
..+++|||+++.+..+.+++.|..... ....+.-++....|.++++.|++++..||++|..+.+|||+|+ +++||.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 345799999999999999999975422 1222333444446788999999999999999999999999997 588999
Q ss_pred ccCCC
Q 010709 449 LDLPK 453 (503)
Q Consensus 449 ~~~p~ 453 (503)
..+|-
T Consensus 831 ~kLPF 835 (928)
T PRK08074 831 VRLPF 835 (928)
T ss_pred ecCCC
Confidence 88774
No 136
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.75 E-value=7.4e-17 Score=137.01 Aligned_cols=144 Identities=44% Similarity=0.630 Sum_probs=110.2
Q ss_pred CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHH
Q 010709 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQ 238 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (503)
+++++.++||+|||+.++..+...... ...++++|++|++.++.|+.+.+..+... ...+..+.+.......
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 72 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS------LKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQ 72 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHH
Confidence 468999999999999886666655433 12578999999999999999999888754 4667777777666655
Q ss_pred HHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeC
Q 010709 239 RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (503)
Q Consensus 239 ~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~ 310 (503)
........+|+++|++.+.+.+.........+++|||||+|.+....................+++++||||
T Consensus 73 ~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 73 EKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 555567899999999999888877655667899999999998876654443223344445677899999996
No 137
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.75 E-value=5e-18 Score=128.19 Aligned_cols=77 Identities=25% Similarity=0.431 Sum_probs=74.6
Q ss_pred HHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 392 EALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 392 ~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
++|+..++.+..+||++++.+|..+++.|++|+..|||||+++++|+|+|++++||++++|++...|.|++||+||.
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRI 77 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCC
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999994
No 138
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=5.5e-16 Score=159.39 Aligned_cols=300 Identities=17% Similarity=0.179 Sum_probs=201.3
Q ss_pred CCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCC
Q 010709 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (503)
Q Consensus 143 ~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~ 222 (503)
.|++.|.-.--.+..| -|..+.||-|||+++.+|+....+. |..|-|++...-||..=++.+..+...+
T Consensus 78 r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~--------GkgVhVVTvNdYLA~RDae~mg~vy~fL- 146 (925)
T PRK12903 78 RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALT--------GKGVIVSTVNEYLAERDAEEMGKVFNFL- 146 (925)
T ss_pred CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhc--------CCceEEEecchhhhhhhHHHHHHHHHHh-
Confidence 7899998888777666 4789999999999999988765554 5668888999999998888888777666
Q ss_pred CceEEEEECCccHHHHHHHhhCCCcEEEECcHHH-HHHHHcC------CCCCCCccEEEecchhHHh-hCC---------
Q 010709 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQG------NTSLSRVSFVILDEADRML-DMG--------- 285 (503)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~------~~~l~~~~~vViDEaH~l~-~~~--------- 285 (503)
++.++++..+....+.. ....++|+++|..-| .+.+..+ ....+.+.+.||||+|.++ +..
T Consensus 147 GLsvG~i~~~~~~~~rr--~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~ 224 (925)
T PRK12903 147 GLSVGINKANMDPNLKR--EAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGG 224 (925)
T ss_pred CCceeeeCCCCChHHHH--HhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCC
Confidence 69999888776655433 334699999998876 3333321 1234678899999999622 100
Q ss_pred ------CHHHHHHHHHhCCC-------------------------------------------------------C----
Q 010709 286 ------FEPQIREVMQNLPD-------------------------------------------------------K---- 300 (503)
Q Consensus 286 ------~~~~~~~il~~~~~-------------------------------------------------------~---- 300 (503)
+......++..+.. +
T Consensus 225 ~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYi 304 (925)
T PRK12903 225 QSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYI 304 (925)
T ss_pred CccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceE
Confidence 00111111111100 0
Q ss_pred ---------------------------------------------------------CcEEEEEeeCCHHHHHHHHHhcC
Q 010709 301 ---------------------------------------------------------HQTLLFSATMPVEIEALAQEYLT 323 (503)
Q Consensus 301 ---------------------------------------------------------~q~i~~SAT~~~~~~~~~~~~~~ 323 (503)
.++-+||+|...+-.++.+-|--
T Consensus 305 V~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l 384 (925)
T PRK12903 305 VRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNM 384 (925)
T ss_pred EECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCC
Confidence 14556777765554444443322
Q ss_pred CCeEEEeCCCCCCCCc-eEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEE
Q 010709 324 DPVQVKVGKVSSPTAN-VIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAV 402 (503)
Q Consensus 324 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~ 402 (503)
+ +.. +. ...+... -..-........|...++..+..... .+.|+||.|.+.+..+.+++.|.+.|+...
T Consensus 385 ~-Vv~-IP-TnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~-------~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~ 454 (925)
T PRK12903 385 R-VNV-VP-TNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHK-------KGQPILIGTAQVEDSETLHELLLEANIPHT 454 (925)
T ss_pred C-EEE-CC-CCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHh-------cCCCEEEEeCcHHHHHHHHHHHHHCCCCce
Confidence 2 222 11 1111111 11113344566777777777765542 344799999999999999999999999988
Q ss_pred EEcCCCCHHHHHHHHHHHhcCC-CcEEEEccccccCCCCCCCC--------EEEEccCCCChhHHHHhhCcceee
Q 010709 403 ALHGGRNQSDRESALRDFRNGS-TNILVATDVASRGLDVMGVA--------HVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 403 ~lh~~~~~~~r~~~~~~f~~g~-~~vLvaT~~~~~Gldip~v~--------~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
.++......+-..+ . +.|. ..|.|||++++||-||.--. |||....|.|..-=.|-.||+||.
T Consensus 455 vLNAk~~e~EA~II-a--~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQ 526 (925)
T PRK12903 455 VLNAKQNAREAEII-A--KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQ 526 (925)
T ss_pred eecccchhhHHHHH-H--hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccC
Confidence 88886544333322 2 4564 67999999999999998322 899999999998888999999995
No 139
>COG4889 Predicted helicase [General function prediction only]
Probab=99.73 E-value=9.1e-18 Score=168.70 Aligned_cols=333 Identities=19% Similarity=0.225 Sum_probs=196.5
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC----CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeE
Q 010709 122 SFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSG----RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLA 197 (503)
Q Consensus 122 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~----~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~ 197 (503)
.|+.+.. .++..++.-..-.+|+|+|+.|+.+..++ ...=+.+++|+|||+.. +-+...+.. .++
T Consensus 141 DW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTs-LkisEala~---------~~i 209 (1518)
T COG4889 141 DWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTS-LKISEALAA---------ARI 209 (1518)
T ss_pred ChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchH-HHHHHHHhh---------hhe
Confidence 4555432 45556676777889999999999998854 23556678999999876 444444333 569
Q ss_pred EEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHH--------------------HHH-----HHhhCCCcEEEEC
Q 010709 198 LVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA--------------------EQR-----SELRGGVSIVVAT 252 (503)
Q Consensus 198 lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~-----~~~~~~~~Ilv~T 252 (503)
|+++|+..|..|..+.+..-.. + +++...+..+.... ... +....+--|+++|
T Consensus 210 L~LvPSIsLLsQTlrew~~~~~-l-~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsT 287 (1518)
T COG4889 210 LFLVPSISLLSQTLREWTAQKE-L-DFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFST 287 (1518)
T ss_pred EeecchHHHHHHHHHHHhhccC-c-cceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEc
Confidence 9999999999998777765432 1 34444444332211 100 1112345699999
Q ss_pred cHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhCC-----CCCcEEEEEeeCC---HHHHHHH------
Q 010709 253 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP-----DKHQTLLFSATMP---VEIEALA------ 318 (503)
Q Consensus 253 p~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~-----~~~q~i~~SAT~~---~~~~~~~------ 318 (503)
++.+...-.....-+..+++||+||||+-.+-.....-..-+.++. +..+.+.|+|||. +..+..+
T Consensus 288 YQSl~~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~ 367 (1518)
T COG4889 288 YQSLPRIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAE 367 (1518)
T ss_pred ccchHHHHHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccce
Confidence 9999766665566788999999999998543211110000000000 1234578899982 1111111
Q ss_pred ------------------------HHhcCCCeEEEeCCCCCCCCceEEE-EEEcChh------hHHHHHHHHHHHHHHhh
Q 010709 319 ------------------------QEYLTDPVQVKVGKVSSPTANVIQI-LEKVSEN------EKVDRLLALLVEEAFLA 367 (503)
Q Consensus 319 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~k~~~l~~~l~~~~~~~ 367 (503)
+..+.+...+...-.........+. ....... .|+--.+.-+..+....
T Consensus 368 l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~ 447 (1518)
T COG4889 368 LSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGED 447 (1518)
T ss_pred eeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhcccc
Confidence 1222222222111111111111111 1111111 12222222222221100
Q ss_pred h------ccCCCCCcEEEEEcchhhHHHHHHHHHH-------------CCC--eEEEEcCCCCHHHHHHHHH---HHhcC
Q 010709 368 E------KSCHPFPLTIVFVERKTRCDEVSEALVA-------------EGL--HAVALHGGRNQSDRESALR---DFRNG 423 (503)
Q Consensus 368 ~------~~~~~~~~~lIF~~~~~~~~~l~~~L~~-------------~~~--~v~~lh~~~~~~~r~~~~~---~f~~g 423 (503)
. ....|-.+.|-||.+.++...+++.|.. .++ .+-...|.|...+|...+. .|...
T Consensus 448 n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~n 527 (1518)
T COG4889 448 NDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPN 527 (1518)
T ss_pred ccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcc
Confidence 0 0111223478899999888887776642 233 4455778999888855544 34567
Q ss_pred CCcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCccee
Q 010709 424 STNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSF 467 (503)
Q Consensus 424 ~~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR 467 (503)
+++||--...+++|+|+|.++-||++++-.++.+.+|-+||+=|
T Consensus 528 eckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMR 571 (1518)
T COG4889 528 ECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMR 571 (1518)
T ss_pred hheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHH
Confidence 88999888999999999999999999999999999999999766
No 140
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.72 E-value=8.8e-15 Score=149.94 Aligned_cols=78 Identities=17% Similarity=0.207 Sum_probs=60.8
Q ss_pred CCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhc----CCCcEEEEccccccCCCC--------
Q 010709 373 PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRN----GSTNILVATDVASRGLDV-------- 440 (503)
Q Consensus 373 ~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~----g~~~vLvaT~~~~~Gldi-------- 440 (503)
..|.++|.+.+...++.+++.|...--..+.+.|..+ .+..++++|++ |...||++|+.+.+|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 3457999999999999999999764223345566543 34568888887 478999999999999999
Q ss_pred CC--CCEEEEccCC
Q 010709 441 MG--VAHVVNLDLP 452 (503)
Q Consensus 441 p~--v~~VI~~~~p 452 (503)
|+ +++||...+|
T Consensus 547 ~G~~Ls~ViI~kLP 560 (636)
T TIGR03117 547 KDNLLTDLIITCAP 560 (636)
T ss_pred CCCcccEEEEEeCC
Confidence 33 8899988777
No 141
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.71 E-value=2.4e-16 Score=132.16 Aligned_cols=112 Identities=37% Similarity=0.512 Sum_probs=101.7
Q ss_pred hHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEE
Q 010709 351 EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 430 (503)
Q Consensus 351 ~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLva 430 (503)
.|...+...+.+.. ...+++||||++...++.+++.|.+.+..+..+||+++..+|..+++.|.+|...+|++
T Consensus 12 ~k~~~i~~~i~~~~-------~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~ 84 (131)
T cd00079 12 EKLEALLELLKEHL-------KKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVA 84 (131)
T ss_pred HHHHHHHHHHHhcc-------cCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEE
Confidence 66767766665532 13567999999999999999999998999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCEEEEccCCCChhHHHHhhCcceeee
Q 010709 431 TDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFNI 469 (503)
Q Consensus 431 T~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~~ 469 (503)
|.++++|+|+|++++||++++|++...+.|++||++|.-
T Consensus 85 t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~ 123 (131)
T cd00079 85 TDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAG 123 (131)
T ss_pred cChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCC
Confidence 999999999999999999999999999999999999975
No 142
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.70 E-value=1.4e-16 Score=142.12 Aligned_cols=153 Identities=20% Similarity=0.234 Sum_probs=101.4
Q ss_pred CCcHHHHHHHHHHhc-------CCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHH
Q 010709 143 RPTSIQAQAMPVALS-------GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVK 215 (503)
Q Consensus 143 ~~~~~Q~~~i~~i~~-------~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~ 215 (503)
.|+++|.+++..+.. .+++++.+|||+|||.+++..+... .. ++++++|+..|+.|+.+.+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l-~~----------~~l~~~p~~~l~~Q~~~~~~ 71 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILEL-AR----------KVLIVAPNISLLEQWYDEFD 71 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHH-HC----------EEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcc-cc----------ceeEecCHHHHHHHHHHHHH
Confidence 578999999999883 5789999999999999875433333 22 59999999999999999997
Q ss_pred HHhccCCCceE----------EEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCC-----------CCCCCccEEE
Q 010709 216 ALSRSLDSFKT----------AIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN-----------TSLSRVSFVI 274 (503)
Q Consensus 216 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~-----------~~l~~~~~vV 274 (503)
.+......... ....................+++++|.+.+........ .....+++||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI 151 (184)
T PF04851_consen 72 DFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVI 151 (184)
T ss_dssp HHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEE
T ss_pred HhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEE
Confidence 76643210100 00111111112223334568899999999987765321 2345678999
Q ss_pred ecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCC
Q 010709 275 LDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMP 311 (503)
Q Consensus 275 iDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~ 311 (503)
+||||++.... .+..++. .+...+|+|||||.
T Consensus 152 ~DEaH~~~~~~---~~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 152 IDEAHHYPSDS---SYREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp EETGGCTHHHH---HHHHHHH--SSCCEEEEEESS-S
T ss_pred EehhhhcCCHH---HHHHHHc--CCCCeEEEEEeCcc
Confidence 99999876431 1566666 44566999999985
No 143
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.69 E-value=9.3e-15 Score=151.36 Aligned_cols=274 Identities=18% Similarity=0.149 Sum_probs=178.3
Q ss_pred CCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCC
Q 010709 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (503)
Q Consensus 143 ~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~ 222 (503)
.|++.|.-+.-.+. +.-|..+.||.|||+++.+|+....+. |..|-|++++..||.+-++.+..+...+
T Consensus 76 r~ydvQlig~l~L~--~G~IaEm~TGEGKTL~a~l~ayl~aL~--------G~~VhVvT~NdyLA~RD~e~m~pvy~~L- 144 (870)
T CHL00122 76 RHFDVQLIGGLVLN--DGKIAEMKTGEGKTLVATLPAYLNALT--------GKGVHIVTVNDYLAKRDQEWMGQIYRFL- 144 (870)
T ss_pred CCCchHhhhhHhhc--CCccccccCCCCchHHHHHHHHHHHhc--------CCceEEEeCCHHHHHHHHHHHHHHHHHc-
Confidence 58888877765554 457889999999999999998755443 5779999999999999999999988777
Q ss_pred CceEEEEECCccHHHHHHHhhCCCcEEEECcHHHH-HHHHcC------CCCCCCccEEEecchhHHh-hCC---------
Q 010709 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFL-DHLQQG------NTSLSRVSFVILDEADRML-DMG--------- 285 (503)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~-~~l~~~------~~~l~~~~~vViDEaH~l~-~~~--------- 285 (503)
++.++++.++....+.. ....++|+++|..-|- +.+..+ ......+.++||||+|.++ +..
T Consensus 145 GLsvg~i~~~~~~~err--~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiISg~ 222 (870)
T CHL00122 145 GLTVGLIQEGMSSEERK--KNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQ 222 (870)
T ss_pred CCceeeeCCCCChHHHH--HhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceeccCC
Confidence 59999988877765533 3445899999987652 222221 1234668899999999622 100
Q ss_pred ------CHHHHHHHHHhCC-------------------------------------------------------C-----
Q 010709 286 ------FEPQIREVMQNLP-------------------------------------------------------D----- 299 (503)
Q Consensus 286 ------~~~~~~~il~~~~-------------------------------------------------------~----- 299 (503)
......++.+.+. .
T Consensus 223 ~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~dYi 302 (870)
T CHL00122 223 SKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYI 302 (870)
T ss_pred CccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCcEE
Confidence 0000000000000 0
Q ss_pred --------------------------------------------------------CCcEEEEEeeCCHHHHHHHHHhcC
Q 010709 300 --------------------------------------------------------KHQTLLFSATMPVEIEALAQEYLT 323 (503)
Q Consensus 300 --------------------------------------------------------~~q~i~~SAT~~~~~~~~~~~~~~ 323 (503)
-.++.+||+|....-..+.+-| +
T Consensus 303 V~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY-~ 381 (870)
T CHL00122 303 VRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIY-N 381 (870)
T ss_pred EECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHHHh-C
Confidence 0156778888765544444443 3
Q ss_pred CCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEE
Q 010709 324 DPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVA 403 (503)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~ 403 (503)
-.+.+.....+.... -....+......|...+...+..... .+.|+||-+.+.+..+.+++.|.+.|+....
T Consensus 382 l~vv~IPtnkp~~R~-d~~d~v~~t~~~K~~AI~~ei~~~~~-------~grPVLIgT~SIe~SE~ls~~L~~~gi~h~v 453 (870)
T CHL00122 382 LEVVCIPTHRPMLRK-DLPDLIYKDELSKWRAIADECLQMHQ-------TGRPILIGTTTIEKSELLSQLLKEYRLPHQL 453 (870)
T ss_pred CCEEECCCCCCccce-eCCCeEEeCHHHHHHHHHHHHHHHHh-------cCCCEEEeeCCHHHHHHHHHHHHHcCCccce
Confidence 333221111111111 11223344556677777776655432 3447999999999999999999999999988
Q ss_pred EcCCCC--HHHHHHHHHHHhcCC-CcEEEEccccccCCCCC
Q 010709 404 LHGGRN--QSDRESALRDFRNGS-TNILVATDVASRGLDVM 441 (503)
Q Consensus 404 lh~~~~--~~~r~~~~~~f~~g~-~~vLvaT~~~~~Gldip 441 (503)
+++.-. ..|- +++.+ .|. ..|-|||++++||.||.
T Consensus 454 LNAk~~~~~~EA-~IIA~--AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 454 LNAKPENVRRES-EIVAQ--AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred eeCCCccchhHH-HHHHh--cCCCCcEEEeccccCCCcCee
Confidence 888632 3333 33332 454 56999999999999976
No 144
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.68 E-value=4.8e-16 Score=149.83 Aligned_cols=255 Identities=17% Similarity=0.142 Sum_probs=170.5
Q ss_pred CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHH
Q 010709 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQ 238 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (503)
+-++-+|||.||||.- +|+++.. .+..++.-|.|-||..+++++++.+ +.+.+++|.......
T Consensus 192 kIi~H~GPTNSGKTy~----ALqrl~~--------aksGvycGPLrLLA~EV~~r~na~g-----ipCdL~TGeE~~~~~ 254 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYR----ALQRLKS--------AKSGVYCGPLRLLAHEVYDRLNALG-----IPCDLLTGEERRFVL 254 (700)
T ss_pred eEEEEeCCCCCchhHH----HHHHHhh--------hccceecchHHHHHHHHHHHhhhcC-----CCccccccceeeecC
Confidence 4478899999999954 4455443 3457999999999999999998875 677777776543221
Q ss_pred HHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhC-CCCCcEEEEEeeCCHHHHHH
Q 010709 239 RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEIEAL 317 (503)
Q Consensus 239 ~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~-~~~~q~i~~SAT~~~~~~~~ 317 (503)
.. ...+..+-||-++.. .-..+++.||||.+.|.+...+-.|.+.+--+ .....+-+ .+.+-.+
T Consensus 255 ~~--~~~a~hvScTVEM~s--------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG-----epsvldl 319 (700)
T KOG0953|consen 255 DN--GNPAQHVSCTVEMVS--------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG-----EPSVLDL 319 (700)
T ss_pred CC--CCcccceEEEEEEee--------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC-----CchHHHH
Confidence 11 123566777766652 12458899999999988877666666554332 22222211 1122233
Q ss_pred HHH---hcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHH
Q 010709 318 AQE---YLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEAL 394 (503)
Q Consensus 318 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L 394 (503)
++. ..++.+.+.....-.+ ..-...+..-+.+ ..+|-+| .|-+++.+..+...+
T Consensus 320 V~~i~k~TGd~vev~~YeRl~p-------------L~v~~~~~~sl~n---------lk~GDCv-V~FSkk~I~~~k~kI 376 (700)
T KOG0953|consen 320 VRKILKMTGDDVEVREYERLSP-------------LVVEETALGSLSN---------LKPGDCV-VAFSKKDIFTVKKKI 376 (700)
T ss_pred HHHHHhhcCCeeEEEeecccCc-------------ceehhhhhhhhcc---------CCCCCeE-EEeehhhHHHHHHHH
Confidence 333 3344444433221111 0000111111111 2334465 455788899999999
Q ss_pred HHCCCe-EEEEcCCCCHHHHHHHHHHHhc--CCCcEEEEccccccCCCCCCCCEEEEccCCC---------ChhHHHHhh
Q 010709 395 VAEGLH-AVALHGGRNQSDRESALRDFRN--GSTNILVATDVASRGLDVMGVAHVVNLDLPK---------VLLAASESL 462 (503)
Q Consensus 395 ~~~~~~-v~~lh~~~~~~~r~~~~~~f~~--g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~---------s~~~~~Qr~ 462 (503)
.+.|.. +..+||++|++.|.+--..|.+ ++.+||||||+.++|+|+. ++.||++++-+ ...+..|-.
T Consensus 377 E~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~-IrRiiF~sl~Kysg~e~~~it~sqikQIA 455 (700)
T KOG0953|consen 377 EKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNLN-IRRIIFYSLIKYSGRETEDITVSQIKQIA 455 (700)
T ss_pred HHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeecccccccccc-eeEEEEeecccCCcccceeccHHHHHHHh
Confidence 988765 9999999999999999999987 8999999999999999996 99999998752 457889999
Q ss_pred Ccceeee
Q 010709 463 CTTSFNI 469 (503)
Q Consensus 463 GR~gR~~ 469 (503)
|||||.-
T Consensus 456 GRAGRf~ 462 (700)
T KOG0953|consen 456 GRAGRFG 462 (700)
T ss_pred hcccccc
Confidence 9999963
No 145
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.65 E-value=4.6e-15 Score=154.72 Aligned_cols=298 Identities=18% Similarity=0.196 Sum_probs=197.3
Q ss_pred CcHHHHHHHHHHhcCC-CeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCC
Q 010709 144 PTSIQAQAMPVALSGR-DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (503)
Q Consensus 144 ~~~~Q~~~i~~i~~~~-~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~ 222 (503)
..++|.+.++.+.+.+ ++++++|+|+|||.|+.++++. .....++++++|..+.+..+++.+.+-+....
T Consensus 1144 ~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~---------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~ 1214 (1674)
T KOG0951|consen 1144 FNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR---------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLL 1214 (1674)
T ss_pred cCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC---------CccceEEEEecchHHHHHHHHHHHHHhhcccc
Confidence 3889999999998665 5999999999999999887765 13457899999999999988888776555555
Q ss_pred CceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCH------HHHHHHHHh
Q 010709 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFE------PQIREVMQN 296 (503)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~------~~~~~il~~ 296 (503)
+..+..+.|....... +....+|+|+||+++-.. + ..+.+++.|.||+|.+.+. .+ -.++.+-..
T Consensus 1215 G~~~~~l~ge~s~~lk---l~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~-~g~v~evi~S~r~ia~q 1285 (1674)
T KOG0951|consen 1215 GLRIVKLTGETSLDLK---LLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGV-YGAVYEVICSMRYIASQ 1285 (1674)
T ss_pred CceEEecCCccccchH---HhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhccc-CCceEEEEeeHHHHHHH
Confidence 6777777776655432 334579999999998544 2 5678899999999976633 12 125566666
Q ss_pred CCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCc--eEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCC
Q 010709 297 LPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTAN--VIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPF 374 (503)
Q Consensus 297 ~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~ 374 (503)
+-++.+++++|..+.+. .+++ .......+.+.....+.+. -.+.+........+....+.......+. ....
T Consensus 1286 ~~k~ir~v~ls~~lana-~d~i--g~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~---a~~~ 1359 (1674)
T KOG0951|consen 1286 LEKKIRVVALSSSLANA-RDLI--GASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRH---AGNR 1359 (1674)
T ss_pred HHhheeEEEeehhhccc-hhhc--cccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHH---hcCC
Confidence 77788999999888532 2221 1111112222221222211 1222222333333333322221111111 1244
Q ss_pred CcEEEEEcchhhHHHHHHHHHH----------------------CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 010709 375 PLTIVFVERKTRCDEVSEALVA----------------------EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD 432 (503)
Q Consensus 375 ~~~lIF~~~~~~~~~l~~~L~~----------------------~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~ 432 (503)
++.+||+++++.|..++..|.. ..+....-|.+++..+++.+-..|..|.+.|+|...
T Consensus 1360 k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~ 1439 (1674)
T KOG0951|consen 1360 KPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSR 1439 (1674)
T ss_pred CCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEc
Confidence 5799999999999877665522 112233339999999999999999999999998876
Q ss_pred ccccCCCCCCCCEEEEcc-----------CCCChhHHHHhhCccee
Q 010709 433 VASRGLDVMGVAHVVNLD-----------LPKVLLAASESLCTTSF 467 (503)
Q Consensus 433 ~~~~Gldip~v~~VI~~~-----------~p~s~~~~~Qr~GR~gR 467 (503)
- ..|+-.. .+.||-+| .+-.++...|+.|+|.|
T Consensus 1440 ~-~~~~~~~-~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~ 1483 (1674)
T KOG0951|consen 1440 D-CYGTKLK-AHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG 1483 (1674)
T ss_pred c-ccccccc-ceEEEEecceeecccccccccCchhHHHHHhhhhcC
Confidence 6 7787765 34555433 24567899999999988
No 146
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.64 E-value=1.4e-15 Score=155.78 Aligned_cols=307 Identities=17% Similarity=0.172 Sum_probs=190.7
Q ss_pred CCCcHHHHHHHHHHh---cC-CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHH
Q 010709 142 TRPTSIQAQAMPVAL---SG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (503)
Q Consensus 142 ~~~~~~Q~~~i~~i~---~~-~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 217 (503)
..+.++|...+.++. +| -+.|+..+||.|||.+- +.++.+++.... ..|| .||+||+..|.+ |..+|..|
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQt-IsLitYLmE~K~---~~GP-~LvivPlstL~N-W~~Ef~kW 466 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQT-ISLITYLMEHKQ---MQGP-FLIIVPLSTLVN-WSSEFPKW 466 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHHH-HHHHHHHHHHcc---cCCC-eEEeccccccCC-chhhcccc
Confidence 378889999999876 33 36999999999999875 667777777532 3345 599999999988 88888888
Q ss_pred hccCCCceEEEEECCccHHH--HHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHH
Q 010709 218 SRSLDSFKTAIVVGGTNIAE--QRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ 295 (503)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~ 295 (503)
... +....+.|....+. .......+.+|+++|++.+.+ .+..+.--++.++||||.|+|.+. ...+...+.
T Consensus 467 aPS---v~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa--~~KLt~~L~ 539 (1157)
T KOG0386|consen 467 APS---VQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNA--ICKLTDTLN 539 (1157)
T ss_pred ccc---eeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccch--hhHHHHHhh
Confidence 743 44444444332221 112223679999999887754 111122235779999999997653 333333333
Q ss_pred hCCCCCcEEEEEeeCCHH----HHHH-----------------------------------------------H------
Q 010709 296 NLPDKHQTLLFSATMPVE----IEAL-----------------------------------------------A------ 318 (503)
Q Consensus 296 ~~~~~~q~i~~SAT~~~~----~~~~-----------------------------------------------~------ 318 (503)
-.-.....+++|+|+-.+ +-.+ +
T Consensus 540 t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLR 619 (1157)
T KOG0386|consen 540 THYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLR 619 (1157)
T ss_pred ccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHH
Confidence 211222234555554100 0000 0
Q ss_pred ------HHhcCCCeEE-----------------------EeCC----------------------CCCCCCceEEEE---
Q 010709 319 ------QEYLTDPVQV-----------------------KVGK----------------------VSSPTANVIQIL--- 344 (503)
Q Consensus 319 ------~~~~~~~~~~-----------------------~~~~----------------------~~~~~~~~~~~~--- 344 (503)
...+.+.+.. .++. -+....++...+
T Consensus 620 RlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~ 699 (1157)
T KOG0386|consen 620 RLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLH 699 (1157)
T ss_pred hhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccc
Confidence 0000000000 0000 000000000000
Q ss_pred -EE---cChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHH
Q 010709 345 -EK---VSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDF 420 (503)
Q Consensus 345 -~~---~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f 420 (503)
.. +....|...+-..+.+.. ..++.+|.||........+.++|.-.++....+.|....++|...++.|
T Consensus 700 ~~~~dL~R~sGKfELLDRiLPKLk-------atgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~F 772 (1157)
T KOG0386|consen 700 YDIKDLVRVSGKFELLDRILPKLK-------ATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIF 772 (1157)
T ss_pred cChhHHHHhccHHHHHHhhhHHHH-------hcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHh
Confidence 00 011112222222222211 2456799999999999999999999999999999999999999999999
Q ss_pred hcCC---CcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 421 RNGS---TNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 421 ~~g~---~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
.... ...|++|.+.+.|+|+..+++||.||.-+++....|+--||.|.
T Consensus 773 N~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahri 823 (1157)
T KOG0386|consen 773 NAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRI 823 (1157)
T ss_pred cCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHh
Confidence 8754 44688999999999999999999999999997777766665553
No 147
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.61 E-value=2.7e-15 Score=114.48 Aligned_cols=80 Identities=40% Similarity=0.576 Sum_probs=76.7
Q ss_pred HHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 389 EVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 389 ~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
.+++.|...++.+..+||+++..+|..+++.|++|...|||+|+++++|+|+|.+++||.+++|.+...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 56788888899999999999999999999999999999999999999999999999999999999999999999999994
No 148
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.61 E-value=3.7e-13 Score=143.57 Aligned_cols=77 Identities=26% Similarity=0.276 Sum_probs=62.1
Q ss_pred CCcEEEEEcchhhHHHHHHHHHHCCCe-EEEEcCCCCHHHHHHHHHHHhcCCC-cEEEEccccccCCCCCC--CCEEEEc
Q 010709 374 FPLTIVFVERKTRCDEVSEALVAEGLH-AVALHGGRNQSDRESALRDFRNGST-NILVATDVASRGLDVMG--VAHVVNL 449 (503)
Q Consensus 374 ~~~~lIF~~~~~~~~~l~~~L~~~~~~-v~~lh~~~~~~~r~~~~~~f~~g~~-~vLvaT~~~~~Gldip~--v~~VI~~ 449 (503)
++++|||+++.+..+.+++.+...... .+..+|..+. ...++.|.++.- .++|+|..+++|||+|+ .+.||..
T Consensus 479 ~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~~---~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~ 555 (654)
T COG1199 479 PGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDER---EELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIV 555 (654)
T ss_pred CCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCcH---HHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEE
Confidence 347999999999999999999877653 4455665543 377888876655 89999999999999997 5889998
Q ss_pred cCCC
Q 010709 450 DLPK 453 (503)
Q Consensus 450 ~~p~ 453 (503)
++|-
T Consensus 556 ~lPf 559 (654)
T COG1199 556 GLPF 559 (654)
T ss_pred ecCC
Confidence 8874
No 149
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.60 E-value=6.7e-13 Score=140.57 Aligned_cols=119 Identities=18% Similarity=0.248 Sum_probs=80.5
Q ss_pred CcEEEEEcchhhHHHHHHHHHHC-CCeEEEEcCCCCHHHHHHHHHHHh----cCCCcEEEEccccccCCCCCC--CCEEE
Q 010709 375 PLTIVFVERKTRCDEVSEALVAE-GLHAVALHGGRNQSDRESALRDFR----NGSTNILVATDVASRGLDVMG--VAHVV 447 (503)
Q Consensus 375 ~~~lIF~~~~~~~~~l~~~L~~~-~~~v~~lh~~~~~~~r~~~~~~f~----~g~~~vLvaT~~~~~Gldip~--v~~VI 447 (503)
+.+|||+++.+..+.+++.|... +.. +..+|.. .+..+++.|+ .|+..||++|..+.+|||+|+ +++||
T Consensus 535 gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vI 610 (697)
T PRK11747 535 KGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVI 610 (697)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEEE
Confidence 34899999999999999998743 333 3445542 4667887776 467889999999999999997 78999
Q ss_pred EccCCCC----h-----hHHHHhhCc------------------ceeeeeeccC-chhhhhhHHHHHHHHHHHHHHHH
Q 010709 448 NLDLPKV----L-----LAASESLCT------------------TSFNITTNLD-GDMKKLEFCLILAITVLLFVIFL 497 (503)
Q Consensus 448 ~~~~p~s----~-----~~~~Qr~GR------------------~gR~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 497 (503)
..++|-. + .+|..+.|+ +||.+.+..| |.+.-++.-+.--.+..+|...|
T Consensus 611 I~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R~~~~~Yg~~~l~sL 688 (697)
T PRK11747 611 ITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRRLLTKRYGKRLLDAL 688 (697)
T ss_pred EEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEcccccchhHHHHHHHhC
Confidence 9887732 2 122222232 4555555666 66666666555455555555444
No 150
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.58 E-value=5.8e-14 Score=138.75 Aligned_cols=94 Identities=18% Similarity=0.257 Sum_probs=82.5
Q ss_pred CCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCc-EEEEccccccCCCCCCCCEEEEccCC
Q 010709 374 FPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTN-ILVATDVASRGLDVMGVAHVVNLDLP 452 (503)
Q Consensus 374 ~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~-vLvaT~~~~~Gldip~v~~VI~~~~p 452 (503)
++++|+|++..+.++.+.++|...++..+.+.|.....+|..++..|+..++- .|++|.+.+.|||+..+++||+||--
T Consensus 1044 gHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdSD 1123 (1185)
T KOG0388|consen 1044 GHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDSD 1123 (1185)
T ss_pred CceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEecCC
Confidence 45699999999999999999999999999999999999999999999986654 57899999999999999999999999
Q ss_pred CChhHHHHhhCccee
Q 010709 453 KVLLAASESLCTTSF 467 (503)
Q Consensus 453 ~s~~~~~Qr~GR~gR 467 (503)
+++..-.|..-||.|
T Consensus 1124 WNPT~D~QAMDRAHR 1138 (1185)
T KOG0388|consen 1124 WNPTADQQAMDRAHR 1138 (1185)
T ss_pred CCcchhhHHHHHHHh
Confidence 887555554444444
No 151
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.58 E-value=6e-13 Score=137.88 Aligned_cols=275 Identities=19% Similarity=0.176 Sum_probs=179.9
Q ss_pred CCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCC
Q 010709 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (503)
Q Consensus 143 ~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~ 222 (503)
.|+++|.-+--.+.+| -|..+.||-|||+++.+|++...+. |..|-||+++..||..=++.+..+...+
T Consensus 85 r~ydVQliGgl~Lh~G--~IAEM~TGEGKTL~atlpaylnAL~--------GkgVhVVTvNdYLA~RDae~m~~vy~~L- 153 (939)
T PRK12902 85 RHFDVQLIGGMVLHEG--QIAEMKTGEGKTLVATLPSYLNALT--------GKGVHVVTVNDYLARRDAEWMGQVHRFL- 153 (939)
T ss_pred CcchhHHHhhhhhcCC--ceeeecCCCChhHHHHHHHHHHhhc--------CCCeEEEeCCHHHHHhHHHHHHHHHHHh-
Confidence 6788887776666544 6789999999999999998876555 6779999999999999999998888777
Q ss_pred CceEEEEECCccHHHHHHHhhCCCcEEEECcHHH-----HHHHHc--CCCCCCCccEEEecchhHHh-hCC---------
Q 010709 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-----LDHLQQ--GNTSLSRVSFVILDEADRML-DMG--------- 285 (503)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-----~~~l~~--~~~~l~~~~~vViDEaH~l~-~~~--------- 285 (503)
++.++++.++....+ +.....++|+++|...| .+.+.. .......+.++||||+|.++ +..
T Consensus 154 GLtvg~i~~~~~~~e--rr~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLIISg~ 231 (939)
T PRK12902 154 GLSVGLIQQDMSPEE--RKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLIISGQ 231 (939)
T ss_pred CCeEEEECCCCChHH--HHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCcccccCC
Confidence 699999887765544 33456799999999887 333332 12345678899999999622 100
Q ss_pred ------CHHHHHHHHHhCCC------------------------------------------------------------
Q 010709 286 ------FEPQIREVMQNLPD------------------------------------------------------------ 299 (503)
Q Consensus 286 ------~~~~~~~il~~~~~------------------------------------------------------------ 299 (503)
......++...+.+
T Consensus 232 ~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~lf~ 311 (939)
T PRK12902 232 VERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKELFI 311 (939)
T ss_pred CccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHHHHh
Confidence 00000000000000
Q ss_pred -C-------------------------------------------------------------CcEEEEEeeCCHHHHHH
Q 010709 300 -K-------------------------------------------------------------HQTLLFSATMPVEIEAL 317 (503)
Q Consensus 300 -~-------------------------------------------------------------~q~i~~SAT~~~~~~~~ 317 (503)
+ .++.+||+|...+-.++
T Consensus 312 ~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~Ef 391 (939)
T PRK12902 312 KDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEVEF 391 (939)
T ss_pred cCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHHH
Confidence 0 14566777765444444
Q ss_pred HHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHC
Q 010709 318 AQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE 397 (503)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~ 397 (503)
.+-|-- .+.......+... ....-........|...+...+.+... .+.|+||-+.+.+..+.+++.|.+.
T Consensus 392 ~~iY~l-~Vv~IPTnkP~~R-~d~~d~vy~t~~~K~~Ai~~ei~~~~~-------~GrPVLIgT~SVe~SE~ls~~L~~~ 462 (939)
T PRK12902 392 EKTYKL-EVTVIPTNRPRRR-QDWPDQVYKTEIAKWRAVANETAEMHK-------QGRPVLVGTTSVEKSELLSALLQEQ 462 (939)
T ss_pred HHHhCC-cEEEcCCCCCeee-ecCCCeEEcCHHHHHHHHHHHHHHHHh-------CCCCEEEeeCCHHHHHHHHHHHHHc
Confidence 444322 2222111111111 111223344556788888777766543 3457999999999999999999999
Q ss_pred CCeEEEEcCCC-CHHHHHHHHHHHhcCC-CcEEEEccccccCCCCC
Q 010709 398 GLHAVALHGGR-NQSDRESALRDFRNGS-TNILVATDVASRGLDVM 441 (503)
Q Consensus 398 ~~~v~~lh~~~-~~~~r~~~~~~f~~g~-~~vLvaT~~~~~Gldip 441 (503)
|+....++..- ..+.-.+++. ..|+ ..|-|||++++||-||.
T Consensus 463 gi~h~vLNAk~~~~~~EA~IIa--~AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 463 GIPHNLLNAKPENVEREAEIVA--QAGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred CCchheeeCCCcchHhHHHHHH--hcCCCCcEEEeccCCCCCcCEe
Confidence 99988888862 2222223333 2454 56999999999999986
No 152
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.57 E-value=8.3e-13 Score=138.90 Aligned_cols=318 Identities=20% Similarity=0.147 Sum_probs=181.1
Q ss_pred CCCcHHHHHHHHHHhc--------CCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHH
Q 010709 142 TRPTSIQAQAMPVALS--------GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 213 (503)
Q Consensus 142 ~~~~~~Q~~~i~~i~~--------~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~ 213 (503)
..-..||..|+..+.. |--+|-.|.||+|||++= .-++..+.. ...|.++.|..-.|.|..|.-+.
T Consensus 407 ~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aN-ARImyaLsd-----~~~g~RfsiALGLRTLTLQTGda 480 (1110)
T TIGR02562 407 HPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLAN-ARAMYALRD-----DKQGARFAIALGLRSLTLQTGHA 480 (1110)
T ss_pred CCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHH-HHHHHHhCC-----CCCCceEEEEccccceeccchHH
Confidence 3457899999988763 223778899999999864 333333322 23466888888888888888777
Q ss_pred HHHHhccCCCceEEEEECCccHHHHH-------------------------------------------HHhh-------
Q 010709 214 VKALSRSLDSFKTAIVVGGTNIAEQR-------------------------------------------SELR------- 243 (503)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~~------- 243 (503)
+++-.. +.+-...++.|+....+-. ..+.
T Consensus 481 ~r~rL~-L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~r 559 (1110)
T TIGR02562 481 LKTRLN-LSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKT 559 (1110)
T ss_pred HHHhcC-CCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhh
Confidence 776542 2233344444433221111 0000
Q ss_pred -CCCcEEEECcHHHHHHHHcCC--C-CCC----CccEEEecchhHHhhCCCHHHHHHHHHhC-CCCCcEEEEEeeCCHHH
Q 010709 244 -GGVSIVVATPGRFLDHLQQGN--T-SLS----RVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEI 314 (503)
Q Consensus 244 -~~~~Ilv~Tp~~l~~~l~~~~--~-~l~----~~~~vViDEaH~l~~~~~~~~~~~il~~~-~~~~q~i~~SAT~~~~~ 314 (503)
-...++|||++.++....... . .+. .-+.|||||+|..-.. ....+.+++.-. .-..++++||||+|+.+
T Consensus 560 ll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~-~~~~L~rlL~w~~~lG~~VlLmSATLP~~l 638 (1110)
T TIGR02562 560 LLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPE-DLPALLRLVQLAGLLGSRVLLSSATLPPAL 638 (1110)
T ss_pred hhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHH-HHHHHHHHHHHHHHcCCCEEEEeCCCCHHH
Confidence 125699999999987763211 1 111 1368999999953211 122233333311 12466999999999886
Q ss_pred HHHHHH-h----------cCC---CeEE---EeCCCCC----------------------------CCCceEEEEEEcCh
Q 010709 315 EALAQE-Y----------LTD---PVQV---KVGKVSS----------------------------PTANVIQILEKVSE 349 (503)
Q Consensus 315 ~~~~~~-~----------~~~---~~~~---~~~~~~~----------------------------~~~~~~~~~~~~~~ 349 (503)
...+.. | .+. +..+ .++.... ....-...+..++.
T Consensus 639 ~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~ 718 (1110)
T TIGR02562 639 VKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSS 718 (1110)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCC
Confidence 654322 1 221 1111 1111000 00011111222222
Q ss_pred h-----hHHHHHHHHHHHHHHhhh---ccCCC-CCc----EEEEEcchhhHHHHHHHHHHC------CCeEEEEcCCCCH
Q 010709 350 N-----EKVDRLLALLVEEAFLAE---KSCHP-FPL----TIVFVERKTRCDEVSEALVAE------GLHAVALHGGRNQ 410 (503)
Q Consensus 350 ~-----~k~~~l~~~l~~~~~~~~---~~~~~-~~~----~lIF~~~~~~~~~l~~~L~~~------~~~v~~lh~~~~~ 410 (503)
. .....+.+.+.+....-. ....+ .+| .+|-+.+.+.+-.+++.|... .+.++.||+..+.
T Consensus 719 ~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l 798 (1110)
T TIGR02562 719 LPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPL 798 (1110)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChH
Confidence 1 122222222222211111 11111 122 478888888888888888754 2458889999988
Q ss_pred HHHHHHHHHH----------------------hc----CCCcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCc
Q 010709 411 SDRESALRDF----------------------RN----GSTNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCT 464 (503)
Q Consensus 411 ~~r~~~~~~f----------------------~~----g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR 464 (503)
..|..+.+.. .+ +...|+|+|.+.|.|+|+. .+++|- -|.++.+.+||.||
T Consensus 799 ~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~d-fd~~~~--~~~~~~sliQ~aGR 875 (1110)
T TIGR02562 799 LLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHD-YDWAIA--DPSSMRSIIQLAGR 875 (1110)
T ss_pred HHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEeccc-CCeeee--ccCcHHHHHHHhhc
Confidence 7777766553 11 4678999999999999985 555543 35678999999999
Q ss_pred ceeeee
Q 010709 465 TSFNIT 470 (503)
Q Consensus 465 ~gR~~~ 470 (503)
+.|...
T Consensus 876 ~~R~~~ 881 (1110)
T TIGR02562 876 VNRHRL 881 (1110)
T ss_pred cccccc
Confidence 988654
No 153
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.54 E-value=4.8e-12 Score=135.16 Aligned_cols=74 Identities=16% Similarity=0.158 Sum_probs=61.0
Q ss_pred CCCCCCcHHHHHHHHHHh----cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHH
Q 010709 139 HEYTRPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 214 (503)
Q Consensus 139 ~~~~~~~~~Q~~~i~~i~----~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~ 214 (503)
+.|..++|.|.+.+..+. .++++++.+|||+|||++.+.|++.+....+ ..++++|.+.|..=..|+.+++
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~-----~~~kIiy~sRThsQl~q~i~El 80 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP-----EVRKIIYASRTHSQLEQATEEL 80 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc-----ccccEEEEcccchHHHHHHHHH
Confidence 456677999999887765 6788999999999999999999998765432 2368999999998888898888
Q ss_pred HHH
Q 010709 215 KAL 217 (503)
Q Consensus 215 ~~~ 217 (503)
++.
T Consensus 81 k~~ 83 (705)
T TIGR00604 81 RKL 83 (705)
T ss_pred Hhh
Confidence 885
No 154
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.54 E-value=1.5e-12 Score=124.19 Aligned_cols=90 Identities=19% Similarity=0.248 Sum_probs=78.5
Q ss_pred CcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcC-CCcE-EEEccccccCCCCCCCCEEEEccCC
Q 010709 375 PLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNG-STNI-LVATDVASRGLDVMGVAHVVNLDLP 452 (503)
Q Consensus 375 ~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g-~~~v-LvaT~~~~~Gldip~v~~VI~~~~p 452 (503)
-|.|||.+--...+.+.-.|.+.|+.++-+.|+|++..|...++.|.+. .++| |++-.+.+..+|+..+.+|+++|+-
T Consensus 639 ~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPW 718 (791)
T KOG1002|consen 639 AKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPW 718 (791)
T ss_pred hhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeeccc
Confidence 4689999999999999999999999999999999999999999999875 4554 5566888889999999999999999
Q ss_pred CCh------hHHHHhhCc
Q 010709 453 KVL------LAASESLCT 464 (503)
Q Consensus 453 ~s~------~~~~Qr~GR 464 (503)
+++ .+.+||||+
T Consensus 719 WNpaVe~Qa~DRiHRIGQ 736 (791)
T KOG1002|consen 719 WNPAVEWQAQDRIHRIGQ 736 (791)
T ss_pred ccHHHHhhhhhhHHhhcC
Confidence 886 456677775
No 155
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.51 E-value=3.7e-11 Score=117.45 Aligned_cols=271 Identities=21% Similarity=0.228 Sum_probs=183.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHHHhccCCC----------ce--------EEEEEC-CccHHHHHHHhh---------
Q 010709 192 GDGPLALVLAPTRELAQQIEKEVKALSRSLDS----------FK--------TAIVVG-GTNIAEQRSELR--------- 243 (503)
Q Consensus 192 ~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~----------~~--------~~~~~~-~~~~~~~~~~~~--------- 243 (503)
-..|+||||+|+|..|.++.+.+.++...... +. ...-.. .....+......
T Consensus 35 ftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~Frl 114 (442)
T PF06862_consen 35 FTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRL 114 (442)
T ss_pred CCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEE
Confidence 35799999999999999998888877643100 00 000000 011111111111
Q ss_pred ---------------CCCcEEEECcHHHHHHHHc------CCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhC---CC
Q 010709 244 ---------------GGVSIVVATPGRFLDHLQQ------GNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL---PD 299 (503)
Q Consensus 244 ---------------~~~~Ilv~Tp~~l~~~l~~------~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~---~~ 299 (503)
..+||+||+|=-|...+.. ..-.|+.+.++|||.||.+. +..-..+..++..+ |.
T Consensus 115 Gik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~-MQNW~Hv~~v~~~lN~~P~ 193 (442)
T PF06862_consen 115 GIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLL-MQNWEHVLHVFEHLNLQPK 193 (442)
T ss_pred eEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHH-HhhHHHHHHHHHHhccCCC
Confidence 2589999999988877764 12247889999999999654 33344455555444 32
Q ss_pred ---------------------CCcEEEEEeeCCHHHHHHHHHhcCCCeEE-Ee--CC-----CCCCCCceEEEEEEcCh-
Q 010709 300 ---------------------KHQTLLFSATMPVEIEALAQEYLTDPVQV-KV--GK-----VSSPTANVIQILEKVSE- 349 (503)
Q Consensus 300 ---------------------~~q~i~~SAT~~~~~~~~~~~~~~~~~~~-~~--~~-----~~~~~~~~~~~~~~~~~- 349 (503)
-+|+|++|+...+++..+...+..|..-. .+ .. .......+.|.+..++.
T Consensus 194 ~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~ 273 (442)
T PF06862_consen 194 KSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCS 273 (442)
T ss_pred CCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCC
Confidence 25999999999999999988866553321 11 11 12334455666665432
Q ss_pred --hhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcE
Q 010709 350 --NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNI 427 (503)
Q Consensus 350 --~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~v 427 (503)
....+...+...+............+.+|||+++--+--.|..+|++.++..+.+|.-.++.+-.+.-..|..|+..+
T Consensus 274 s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~i 353 (442)
T PF06862_consen 274 SPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPI 353 (442)
T ss_pred CcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceE
Confidence 222233333333333322221345567999999999999999999999999999999999999999999999999999
Q ss_pred EEEccccc--cCCCCCCCCEEEEccCCCChhHHHHhhC
Q 010709 428 LVATDVAS--RGLDVMGVAHVVNLDLPKVLLAASESLC 463 (503)
Q Consensus 428 LvaT~~~~--~Gldip~v~~VI~~~~p~s~~~~~Qr~G 463 (503)
|+.|.-+- +=..|.++++||+|++|..+.-|...++
T Consensus 354 LL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n 391 (442)
T PF06862_consen 354 LLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLN 391 (442)
T ss_pred EEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHh
Confidence 99997544 6678999999999999999866665554
No 156
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.49 E-value=6.4e-12 Score=130.83 Aligned_cols=138 Identities=20% Similarity=0.239 Sum_probs=93.3
Q ss_pred EEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHH--
Q 010709 162 LGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR-- 239 (503)
Q Consensus 162 ii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 239 (503)
+..+-+|||||.+|+ -++...+.. |+.+||++|...|+.|+.+.|++.+. +..+..++++....+..
T Consensus 164 i~~~~~GSGKTevyl-~~i~~~l~~-------Gk~vLvLvPEi~lt~q~~~rl~~~f~---~~~v~~lhS~l~~~~R~~~ 232 (665)
T PRK14873 164 VWQALPGEDWARRLA-AAAAATLRA-------GRGALVVVPDQRDVDRLEAALRALLG---AGDVAVLSAGLGPADRYRR 232 (665)
T ss_pred HhhcCCCCcHHHHHH-HHHHHHHHc-------CCeEEEEecchhhHHHHHHHHHHHcC---CCcEEEECCCCCHHHHHHH
Confidence 344446999999994 455555553 67899999999999999999998773 24577777777655432
Q ss_pred --HHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCC---CHHHHHH--HHHhCCCCCcEEEEEeeCCH
Q 010709 240 --SELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG---FEPQIRE--VMQNLPDKHQTLLFSATMPV 312 (503)
Q Consensus 240 --~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~---~~~~~~~--il~~~~~~~q~i~~SAT~~~ 312 (503)
....+..+|+|+|-..++ ..+.++++|||||-|.-.-.. ..-..+. +++....+..+|+.|||+.-
T Consensus 233 w~~~~~G~~~IViGtRSAvF-------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSl 305 (665)
T PRK14873 233 WLAVLRGQARVVVGTRSAVF-------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTA 305 (665)
T ss_pred HHHHhCCCCcEEEEcceeEE-------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCH
Confidence 233456899999955443 367899999999999533221 1111222 22333456779999999965
Q ss_pred HHHHH
Q 010709 313 EIEAL 317 (503)
Q Consensus 313 ~~~~~ 317 (503)
+....
T Consensus 306 es~~~ 310 (665)
T PRK14873 306 EAQAL 310 (665)
T ss_pred HHHHH
Confidence 54433
No 157
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.45 E-value=4.4e-13 Score=135.84 Aligned_cols=307 Identities=17% Similarity=0.175 Sum_probs=187.4
Q ss_pred HHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEE
Q 010709 148 QAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTA 227 (503)
Q Consensus 148 Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~ 227 (503)
-...+..+..+..++|-+.||+|||+.+.-.+|..++...... -..+.+..|+|..+..+++++.+--.. .++
T Consensus 383 ~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~---~~na~v~qprrisaisiaerva~er~e----~~g 455 (1282)
T KOG0921|consen 383 RSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGA---SFNAVVSQPRRISAISLAERVANERGE----EVG 455 (1282)
T ss_pred HHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccc---cccceeccccccchHHHHHHHHHhhHH----hhc
Confidence 3445556667777999999999999999888888877753211 233667779998888888777543211 111
Q ss_pred EEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHh-hCCCHHHHHHHHHhCCCCCcEEEE
Q 010709 228 IVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRML-DMGFEPQIREVMQNLPDKHQTLLF 306 (503)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~-~~~~~~~~~~il~~~~~~~q~i~~ 306 (503)
-..|.....+. ..-...-.|++||-+.+++++... +..+.++|+||.|... +..|...+.+-+.-.-++..+++|
T Consensus 456 ~tvgy~vRf~S-a~prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lm 531 (1282)
T KOG0921|consen 456 ETCGYNVRFDS-ATPRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLM 531 (1282)
T ss_pred ccccccccccc-cccccccceeeeccchhhhhhhhc---ccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhh
Confidence 11111111110 001123468999999999998764 5678899999999532 223544444444444556777888
Q ss_pred EeeCCHHHHHHHHHhcCCCeEEEe----------------------CCCCCCCC----------ceE----EEEEEcC--
Q 010709 307 SATMPVEIEALAQEYLTDPVQVKV----------------------GKVSSPTA----------NVI----QILEKVS-- 348 (503)
Q Consensus 307 SAT~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~----------~~~----~~~~~~~-- 348 (503)
|||+..+. ...|+.+-..+.+ ........ ... ..-..+.
T Consensus 532 satIdTd~---f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~ 608 (1282)
T KOG0921|consen 532 SATIDTDL---FTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPS 608 (1282)
T ss_pred hcccchhh---hhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChh
Confidence 88874331 1122211111100 00000000 000 0000000
Q ss_pred ----------hhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHC-------CCeEEEEcCCCCHH
Q 010709 349 ----------ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-------GLHAVALHGGRNQS 411 (503)
Q Consensus 349 ----------~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~-------~~~v~~lh~~~~~~ 411 (503)
...+.+....++. .........+-.+-++||.+....+-.|...|... .+.+.++|+.....
T Consensus 609 ~~~~~~~am~~~se~d~~f~l~E-al~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~ 687 (1282)
T KOG0921|consen 609 YNESTRTAMSRLSEKDIPFGLIE-ALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQ 687 (1282)
T ss_pred hcchhhhhhhcchhhcchhHHHH-HHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccH
Confidence 0001111111111 11111122234566999999999999888888654 35788999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCC------------------ChhHHHHhhCcceeee
Q 010709 412 DRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPK------------------VLLAASESLCTTSFNI 469 (503)
Q Consensus 412 ~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~------------------s~~~~~Qr~GR~gR~~ 469 (503)
++.++++..+.|..++++.|++++..++|.++.+||+.+..+ +..+..||.||+||..
T Consensus 688 eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR 763 (1282)
T KOG0921|consen 688 EQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVR 763 (1282)
T ss_pred hhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceec
Confidence 999999999999999999999999999999999998766432 3467789999988853
No 158
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.41 E-value=7.1e-12 Score=124.42 Aligned_cols=110 Identities=15% Similarity=0.213 Sum_probs=80.8
Q ss_pred CcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhc--CCCcE-EEEccccccCCCCCCCCEEEEccC
Q 010709 375 PLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRN--GSTNI-LVATDVASRGLDVMGVAHVVNLDL 451 (503)
Q Consensus 375 ~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~--g~~~v-LvaT~~~~~Gldip~v~~VI~~~~ 451 (503)
.|++|...-.....-+..+|.+.|+....+||....++|+.+++.|.. |..+| |++-.+.+.|+|+-+.+|+|.+|+
T Consensus 747 eK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDl 826 (901)
T KOG4439|consen 747 EKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDL 826 (901)
T ss_pred ceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEec
Confidence 356666665666677888899999999999999999999999999964 44555 556688899999999999999999
Q ss_pred CCChhHHHH------hhCc-----ceeeeeeccC-chhhhhhHHH
Q 010709 452 PKVLLAASE------SLCT-----TSFNITTNLD-GDMKKLEFCL 484 (503)
Q Consensus 452 p~s~~~~~Q------r~GR-----~gR~~~~~~~-~~~~~~~~~~ 484 (503)
-++++-=.| |+|. ..|.++...- .++..+..+-
T Consensus 827 HWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTvEqrV~~LQdkK 871 (901)
T KOG4439|consen 827 HWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTVEQRVKSLQDKK 871 (901)
T ss_pred ccCHHHHHHHHHHHHHhcccCceEEEEEEecCcHHHHHHHHHHHH
Confidence 999854333 3333 2344444443 5555555443
No 159
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.40 E-value=7.1e-13 Score=107.92 Aligned_cols=135 Identities=21% Similarity=0.250 Sum_probs=81.3
Q ss_pred CCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHH
Q 010709 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE 237 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (503)
|+-.++-..+|+|||.-.+.-++...+.. +.++|||.|||.++..+.+.++... +++. ..... .
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~-------~~rvLvL~PTRvva~em~~aL~~~~-----~~~~--t~~~~-~- 67 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKR-------RLRVLVLAPTRVVAEEMYEALKGLP-----VRFH--TNARM-R- 67 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHT-------T--EEEEESSHHHHHHHHHHTTTSS-----EEEE--STTSS---
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHc-------cCeEEEecccHHHHHHHHHHHhcCC-----cccC--ceeee-c-
Confidence 44578899999999987655455555553 6889999999999988877775431 2222 11111 0
Q ss_pred HHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCC--CHHHHHHHHHhCCCCCcEEEEEeeCCHHH
Q 010709 238 QRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG--FEPQIREVMQNLPDKHQTLLFSATMPVEI 314 (503)
Q Consensus 238 ~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~--~~~~~~~il~~~~~~~q~i~~SAT~~~~~ 314 (503)
....+.-|-++|.+.+.+.+.+ ...+.++++||+||||..-... +...+... .. .....+|+||||+|-..
T Consensus 68 ---~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~-~~-~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 68 ---THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTSIAARGYLREL-AE-SGEAKVIFMTATPPGSE 140 (148)
T ss_dssp ------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHHHHHHHHHHHH-HH-TTS-EEEEEESS-TT--
T ss_pred ---cccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHHHhhheeHHHh-hh-ccCeeEEEEeCCCCCCC
Confidence 1235577899999999888877 5567899999999999532111 12222222 22 23467999999998654
No 160
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.39 E-value=3.5e-11 Score=126.31 Aligned_cols=114 Identities=15% Similarity=0.126 Sum_probs=90.3
Q ss_pred EEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCC
Q 010709 345 EKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGS 424 (503)
Q Consensus 345 ~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~ 424 (503)
.+.....|...++..+..... .+.|+||-+.+.+..+.|++.|...|+..-.++......|-..+-+ .|.
T Consensus 606 vy~t~~eK~~Aii~ei~~~~~-------~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~---AG~ 675 (1112)
T PRK12901 606 VYKTKREKYNAVIEEITELSE-------AGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAE---AGQ 675 (1112)
T ss_pred EecCHHHHHHHHHHHHHHHHH-------CCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHh---cCC
Confidence 344566788888887776653 3347999999999999999999999998777777655555443333 343
Q ss_pred -CcEEEEccccccCCCCC--------CCCEEEEccCCCChhHHHHhhCcceee
Q 010709 425 -TNILVATDVASRGLDVM--------GVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 425 -~~vLvaT~~~~~Gldip--------~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
-.|-|||++++||-||. +==+||-...+.|..--.|-.||+||.
T Consensus 676 ~GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQ 728 (1112)
T PRK12901 676 PGTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQ 728 (1112)
T ss_pred CCcEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccC
Confidence 56899999999999998 334799999999999999999999995
No 161
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.34 E-value=2e-10 Score=118.17 Aligned_cols=277 Identities=15% Similarity=0.158 Sum_probs=169.0
Q ss_pred CCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHH
Q 010709 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE 237 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (503)
+.-.+|-+|+|+|||.+. +..+...+.. ...++|+|..++.|+.+.+..++..+-. ++. .+......
T Consensus 49 ~~V~vVRSpMGTGKTtaL-i~wLk~~l~~------~~~~VLvVShRrSL~~sL~~rf~~~~l~--gFv--~Y~d~~~~-- 115 (824)
T PF02399_consen 49 RGVLVVRSPMGTGKTTAL-IRWLKDALKN------PDKSVLVVSHRRSLTKSLAERFKKAGLS--GFV--NYLDSDDY-- 115 (824)
T ss_pred CCeEEEECCCCCCcHHHH-HHHHHHhccC------CCCeEEEEEhHHHHHHHHHHHHhhcCCC--cce--eeeccccc--
Confidence 344899999999999864 4455544322 2577999999999999999999765421 122 11111110
Q ss_pred HHHHhh-CCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHH-------HHHHHhCCCCCcEEEEEee
Q 010709 238 QRSELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQI-------REVMQNLPDKHQTLLFSAT 309 (503)
Q Consensus 238 ~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~-------~~il~~~~~~~q~i~~SAT 309 (503)
.+. ...+-+++..+.|.+.. ...+.++++|||||+-..+..-|.+.+ ..+...+.....+|+|-|+
T Consensus 116 ---~i~~~~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ 189 (824)
T PF02399_consen 116 ---IIDGRPYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDAD 189 (824)
T ss_pred ---cccccccCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCC
Confidence 011 12466777777776543 234677999999999866554232222 2223334556779999999
Q ss_pred CCHHHHHHHHHhcCC-CeEEEeCCCCCCCCceEEEEEEcC----------------------------------hhhHHH
Q 010709 310 MPVEIEALAQEYLTD-PVQVKVGKVSSPTANVIQILEKVS----------------------------------ENEKVD 354 (503)
Q Consensus 310 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~k~~ 354 (503)
+....-++++.+.++ ++.+.++....+...-+..+..-. ......
T Consensus 190 ln~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (824)
T PF02399_consen 190 LNDQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDET 269 (824)
T ss_pred CCHHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchh
Confidence 999999998887653 223322221111110000000000 000011
Q ss_pred HHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccc
Q 010709 355 RLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVA 434 (503)
Q Consensus 355 ~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 434 (503)
.....+..... .++++-||+.+...++.+++........+..++|..+..+ + +. -++.+|++=|.+.
T Consensus 270 tF~~~L~~~L~-------~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d---v-~~--W~~~~VviYT~~i 336 (824)
T PF02399_consen 270 TFFSELLARLN-------AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED---V-ES--WKKYDVVIYTPVI 336 (824)
T ss_pred hHHHHHHHHHh-------CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc---c-cc--ccceeEEEEeceE
Confidence 12222222221 2345778999999999999999988889999988776652 2 22 3578999999999
Q ss_pred ccCCCCCCCC--EEEEccCC----CChhHHHHhhCcce
Q 010709 435 SRGLDVMGVA--HVVNLDLP----KVLLAASESLCTTS 466 (503)
Q Consensus 435 ~~Gldip~v~--~VI~~~~p----~s~~~~~Qr~GR~g 466 (503)
.-|+++.... -|.-|=-| .++.+..|++||+-
T Consensus 337 tvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR 374 (824)
T PF02399_consen 337 TVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVR 374 (824)
T ss_pred EEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHH
Confidence 9999987543 34433222 34567899999953
No 162
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.31 E-value=8.1e-11 Score=130.62 Aligned_cols=92 Identities=17% Similarity=0.225 Sum_probs=82.8
Q ss_pred cEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcC--CCcEEEEccccccCCCCCCCCEEEEccCCC
Q 010709 376 LTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNG--STNILVATDVASRGLDVMGVAHVVNLDLPK 453 (503)
Q Consensus 376 ~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g--~~~vLvaT~~~~~Gldip~v~~VI~~~~p~ 453 (503)
++|||.+.....+.+...+...++..+.++|.++.+.|...++.|.++ ..-.++++.+++.|+|+...++||.+|+.+
T Consensus 713 kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~w 792 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWW 792 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEecccc
Confidence 799999999999999999999998999999999999999999999986 455677778999999999999999999999
Q ss_pred ChhHHHHhhCccee
Q 010709 454 VLLAASESLCTTSF 467 (503)
Q Consensus 454 s~~~~~Qr~GR~gR 467 (503)
+++...|...|+.|
T Consensus 793 np~~~~Qa~dRa~R 806 (866)
T COG0553 793 NPAVELQAIDRAHR 806 (866)
T ss_pred ChHHHHHHHHHHHH
Confidence 99777776666555
No 163
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.30 E-value=2e-11 Score=117.79 Aligned_cols=154 Identities=21% Similarity=0.218 Sum_probs=92.3
Q ss_pred HHHHHHHHHh-------------cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHH
Q 010709 147 IQAQAMPVAL-------------SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 213 (503)
Q Consensus 147 ~Q~~~i~~i~-------------~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~ 213 (503)
+|.+++.+++ ..+.++++.++|+|||+..+ .++..+...... .....+|||+|. .+..||.++
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i-~~~~~l~~~~~~--~~~~~~LIv~P~-~l~~~W~~E 76 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAI-ALISYLKNEFPQ--RGEKKTLIVVPS-SLLSQWKEE 76 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHH-HHHHHHHHCCTT--SS-S-EEEEE-T-TTHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhh-hhhhhhhhcccc--ccccceeEeecc-chhhhhhhh
Confidence 4777777664 22459999999999998764 444444443211 111349999999 777899999
Q ss_pred HHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHH-----HHHHcCCCCCCCccEEEecchhHHhhCCCHH
Q 010709 214 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFL-----DHLQQGNTSLSRVSFVILDEADRMLDMGFEP 288 (503)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~-----~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~ 288 (503)
+.++.... .+++..+.+...............+++++|++.+. .... .+..-++++||+||+|.+-+. ..
T Consensus 77 ~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~--~l~~~~~~~vIvDEaH~~k~~--~s 151 (299)
T PF00176_consen 77 IEKWFDPD-SLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKE--DLKQIKWDRVIVDEAHRLKNK--DS 151 (299)
T ss_dssp HHHHSGT--TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTH--HHHTSEEEEEEETTGGGGTTT--TS
T ss_pred hccccccc-cccccccccccccccccccccccceeeecccccccccccccccc--ccccccceeEEEecccccccc--cc
Confidence 99998542 35555555554223222233456899999999998 1111 111235899999999988544 33
Q ss_pred HHHHHHHhCCCCCcEEEEEeeC
Q 010709 289 QIREVMQNLPDKHQTLLFSATM 310 (503)
Q Consensus 289 ~~~~il~~~~~~~q~i~~SAT~ 310 (503)
.....+..+. ....+++||||
T Consensus 152 ~~~~~l~~l~-~~~~~lLSgTP 172 (299)
T PF00176_consen 152 KRYKALRKLR-ARYRWLLSGTP 172 (299)
T ss_dssp HHHHHHHCCC-ECEEEEE-SS-
T ss_pred cccccccccc-cceEEeecccc
Confidence 3444555565 45578899998
No 164
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.28 E-value=1.1e-09 Score=112.31 Aligned_cols=93 Identities=17% Similarity=0.228 Sum_probs=77.3
Q ss_pred CcEEEEEcchhhHHHHHHHHHH----------------------CCCeEEEEcCCCCHHHHHHHHHHHhcCC----CcEE
Q 010709 375 PLTIVFVERKTRCDEVSEALVA----------------------EGLHAVALHGGRNQSDRESALRDFRNGS----TNIL 428 (503)
Q Consensus 375 ~~~lIF~~~~~~~~~l~~~L~~----------------------~~~~v~~lh~~~~~~~r~~~~~~f~~g~----~~vL 428 (503)
.|.|||.++....+.+..+|.. .|.....+.|.....+|..+.+.|.+.. ...|
T Consensus 1143 DKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~L 1222 (1567)
T KOG1015|consen 1143 DKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFL 1222 (1567)
T ss_pred ceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEEEE
Confidence 5789999999998888888854 2456788999999999999999998642 4479
Q ss_pred EEccccccCCCCCCCCEEEEccCCCChhHHHHhhCccee
Q 010709 429 VATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSF 467 (503)
Q Consensus 429 vaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR 467 (503)
|+|.+.+.|||+-+++.||.||..+++.--+|-|=|+-|
T Consensus 1223 ISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyR 1261 (1567)
T KOG1015|consen 1223 ISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYR 1261 (1567)
T ss_pred EeeccCccccceeecceEEEEecccCCccchHHHHHHHh
Confidence 999999999999999999999999998665665555444
No 165
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.16 E-value=4.7e-10 Score=106.37 Aligned_cols=73 Identities=19% Similarity=0.100 Sum_probs=57.1
Q ss_pred CCcHHHHHHHHH----HhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHH
Q 010709 143 RPTSIQAQAMPV----ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (503)
Q Consensus 143 ~~~~~Q~~~i~~----i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 217 (503)
.|++.|.+.+.. +.+|+++++.+|||+|||++|+.|++.+....+.. ..+.+++|.++|..+..|....++++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHHHhc
Confidence 469999995554 44788999999999999999999999886654311 02347999999999988887777665
No 166
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.16 E-value=4.7e-10 Score=106.37 Aligned_cols=73 Identities=19% Similarity=0.100 Sum_probs=57.1
Q ss_pred CCcHHHHHHHHH----HhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHH
Q 010709 143 RPTSIQAQAMPV----ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (503)
Q Consensus 143 ~~~~~Q~~~i~~----i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 217 (503)
.|++.|.+.+.. +.+|+++++.+|||+|||++|+.|++.+....+.. ..+.+++|.++|..+..|....++++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHHHhc
Confidence 469999995554 44788999999999999999999999886654311 02347999999999988887777665
No 167
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.15 E-value=7.2e-09 Score=113.10 Aligned_cols=293 Identities=16% Similarity=0.165 Sum_probs=160.6
Q ss_pred CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHH
Q 010709 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQ 238 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (503)
+..+|.=-+|||||+... -+...+... ...+.+++|+-+++|-.|+.+.+..+..... .. . ...+..+.
T Consensus 274 ~~G~IWHtqGSGKTlTm~-~~A~~l~~~-----~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~--~~--~-~~~s~~~L 342 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMF-KLARLLLEL-----PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAF--ND--P-KAESTSEL 342 (962)
T ss_pred CceEEEeecCCchHHHHH-HHHHHHHhc-----cCCCeEEEEechHHHHHHHHHHHHHHHHhhh--hc--c-cccCHHHH
Confidence 358889999999998642 222233332 4578999999999999999999999885432 11 1 34444454
Q ss_pred HHHhhCC-CcEEEECcHHHHHHHHcCC--CCCCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHH
Q 010709 239 RSELRGG-VSIVVATPGRFLDHLQQGN--TSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIE 315 (503)
Q Consensus 239 ~~~~~~~-~~Ilv~Tp~~l~~~l~~~~--~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~ 315 (503)
...+..+ ..|+|+|.+.|-....... ..-.+=-+||+|||||-- ++..-..+-..+ ++...++||+||-..-.
T Consensus 343 k~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ---~G~~~~~~~~~~-~~a~~~gFTGTPi~~~d 418 (962)
T COG0610 343 KELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ---YGELAKLLKKAL-KKAIFIGFTGTPIFKED 418 (962)
T ss_pred HHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc---ccHHHHHHHHHh-ccceEEEeeCCcccccc
Confidence 5555533 4899999999987776541 112223378999999842 222222222333 33669999999832211
Q ss_pred HH-HHHhcCCCeEEEeCCCCCCCCce-EEEEEEc----------C---------------------------------hh
Q 010709 316 AL-AQEYLTDPVQVKVGKVSSPTANV-IQILEKV----------S---------------------------------EN 350 (503)
Q Consensus 316 ~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----------~---------------------------------~~ 350 (503)
.. ....+++...............+ ...+... . ..
T Consensus 419 ~~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 498 (962)
T COG0610 419 KDTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLA 498 (962)
T ss_pred ccchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcch
Confidence 11 12222222222111111000000 0000000 0 00
Q ss_pred hHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCC-------------------e----EEEEcCC
Q 010709 351 EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGL-------------------H----AVALHGG 407 (503)
Q Consensus 351 ~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~-------------------~----v~~lh~~ 407 (503)
.+.......+..+... ......++++.+.++..|..+.+....... . ....|..
T Consensus 499 ~r~~~~a~~i~~~f~~---~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 575 (962)
T COG0610 499 VRLIRAAKDIYDHFKK---EEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAK 575 (962)
T ss_pred HHHHHHHHHHHHHHHh---hcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHH
Confidence 0011111111111111 234456777777777755555544432110 0 0000111
Q ss_pred CCHHHHHHHHHHH--hcCCCcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCcceeeeee
Q 010709 408 RNQSDRESALRDF--RNGSTNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFNITT 471 (503)
Q Consensus 408 ~~~~~r~~~~~~f--~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~~~~ 471 (503)
. ...+......| +....++||.++++-+|+|-|- -+.+-+|-|----..+|-+-|+.|.+..
T Consensus 576 ~-~~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~-L~TmYvDK~Lk~H~L~QAisRtNR~~~~ 639 (962)
T COG0610 576 L-KDEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPC-LNTLYVDKPLKYHNLIQAISRTNRVFPG 639 (962)
T ss_pred H-HHHHhhhhhhhcCcCCCCCEEEEEccccccCCccc-cceEEeccccccchHHHHHHHhccCCCC
Confidence 1 22233334443 4567899999999999999994 5566777777778899999999998776
No 168
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=1.9e-09 Score=104.20 Aligned_cols=317 Identities=22% Similarity=0.224 Sum_probs=197.2
Q ss_pred CCCcHHHHHHHHHHhcCCCeEEE-ccCCCch--hHHhHHHHHHHHHhcCC-----------------------CCCCCCC
Q 010709 142 TRPTSIQAQAMPVALSGRDLLGC-AETGSGK--TAAFTIPMIQHCVAQTP-----------------------VGRGDGP 195 (503)
Q Consensus 142 ~~~~~~Q~~~i~~i~~~~~vii~-~~TGsGK--Tl~~~lp~l~~~~~~~~-----------------------~~~~~~~ 195 (503)
..+|+.|.+.+-.+.+-+|++.. +-.+.|+ +-.|.+.++.++++.+. -.+...|
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 46899999999998888886543 2224455 45677888888664220 0122368
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhccCCCce--------EEEEECCc--------cHHHHHHH------------------
Q 010709 196 LALVLAPTRELAQQIEKEVKALSRSLDSFK--------TAIVVGGT--------NIAEQRSE------------------ 241 (503)
Q Consensus 196 ~~lil~Ptr~La~q~~~~~~~~~~~~~~~~--------~~~~~~~~--------~~~~~~~~------------------ 241 (503)
+||||||+|+.|-.+...+..+..+...-+ ...-++|. ...+....
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 999999999999999988888754332100 01111110 00000000
Q ss_pred ----h---hCCCcEEEECcHHHHHHHHcC-----C-CCCCCccEEEecchhHHhhCCCHHHHHHHHHhC---CC------
Q 010709 242 ----L---RGGVSIVVATPGRFLDHLQQG-----N-TSLSRVSFVILDEADRMLDMGFEPQIREVMQNL---PD------ 299 (503)
Q Consensus 242 ----~---~~~~~Ilv~Tp~~l~~~l~~~-----~-~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~---~~------ 299 (503)
+ ....+|+||+|=-|...+.+. . -.+..+.++|||-||-++... -..+..++..+ |.
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QN-wEhl~~ifdHLn~~P~k~h~~D 453 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQN-WEHLLHIFDHLNLQPSKQHDVD 453 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhh-HHHHHHHHHHhhcCcccccCCC
Confidence 0 135899999998887777632 1 136778999999999776443 23344444443 22
Q ss_pred ---------------CCcEEEEEeeCCHHHHHHHHHhcCCCeEE-Ee---------CCCCCCCCceEEEEEEcCh----h
Q 010709 300 ---------------KHQTLLFSATMPVEIEALAQEYLTDPVQV-KV---------GKVSSPTANVIQILEKVSE----N 350 (503)
Q Consensus 300 ---------------~~q~i~~SAT~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~~~~~~~~~~----~ 350 (503)
-+|+++||+--.+....+...+..|..-. .. .....+...+.+.+..-.. .
T Consensus 454 fSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D 533 (698)
T KOG2340|consen 454 FSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPD 533 (698)
T ss_pred hhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCch
Confidence 14788888887777666666555442211 11 1111111222222222222 2
Q ss_pred hHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEE
Q 010709 351 EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 430 (503)
Q Consensus 351 ~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLva 430 (503)
.+.......+...... .....+|||.++.-.--++..++.+..+..+.+|.-.++.+-.+.-+.|..|...||+-
T Consensus 534 ~RFkyFv~~ImPq~~k-----~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLy 608 (698)
T KOG2340|consen 534 ARFKYFVDKIMPQLIK-----RTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLY 608 (698)
T ss_pred HHHHHHHHhhchhhcc-----cccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEE
Confidence 2333333222222111 11234899999999999999999999888888887777777777778899999999999
Q ss_pred ccccc--cCCCCCCCCEEEEccCCCChhHHH---HhhCc
Q 010709 431 TDVAS--RGLDVMGVAHVVNLDLPKVLLAAS---ESLCT 464 (503)
Q Consensus 431 T~~~~--~Gldip~v~~VI~~~~p~s~~~~~---Qr~GR 464 (503)
|.-+. +-.+|.+|+.||+|.+|..+.-|. -+++|
T Consensus 609 TER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k 647 (698)
T KOG2340|consen 609 TERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDK 647 (698)
T ss_pred ehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhh
Confidence 97554 678999999999999999985444 44444
No 169
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.10 E-value=6.7e-09 Score=107.90 Aligned_cols=319 Identities=20% Similarity=0.194 Sum_probs=194.0
Q ss_pred CCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCC
Q 010709 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (503)
Q Consensus 143 ~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~ 222 (503)
.|+.+|.-.- +.-...-|.-+.||-|||+++.+|+....+. |..+.+++-.--||.--++++..+...+
T Consensus 80 ~~~dVQliG~--i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~--------gkgVhvVTvNdYLA~RDae~m~~l~~~L- 148 (822)
T COG0653 80 RHFDVQLLGG--IVLHLGDIAEMRTGEGKTLVATLPAYLNALA--------GKGVHVVTVNDYLARRDAEWMGPLYEFL- 148 (822)
T ss_pred ChhhHHHhhh--hhhcCCceeeeecCCchHHHHHHHHHHHhcC--------CCCcEEeeehHHhhhhCHHHHHHHHHHc-
Confidence 4555554444 3344457789999999999999888766544 5668899999899998888888888776
Q ss_pred CceEEEEECCccHHHHHHHhhCCCcEEEECcHHH-HHHHHcC------CCCCCCccEEEecchhHHh-h--------CC-
Q 010709 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQG------NTSLSRVSFVILDEADRML-D--------MG- 285 (503)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~------~~~l~~~~~vViDEaH~l~-~--------~~- 285 (503)
++.+++...+....+.... ..++|.++|-..| .+.+.-+ ......+.+.|+||++-++ + .|
T Consensus 149 GlsvG~~~~~m~~~ek~~a--Y~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~ 226 (822)
T COG0653 149 GLSVGVILAGMSPEEKRAA--YACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGP 226 (822)
T ss_pred CCceeeccCCCChHHHHHH--HhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeecc
Confidence 6999999988876654443 4589999998776 2222111 1224467889999998522 1 00
Q ss_pred ------CHHHHHHHHHhCCCC-----------------------------------------------------------
Q 010709 286 ------FEPQIREVMQNLPDK----------------------------------------------------------- 300 (503)
Q Consensus 286 ------~~~~~~~il~~~~~~----------------------------------------------------------- 300 (503)
....+..+...+...
T Consensus 227 ~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dY 306 (822)
T COG0653 227 AEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDY 306 (822)
T ss_pred cccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCee
Confidence 111222222111100
Q ss_pred ----C------------------------------------------------------cEEEEEeeCCHHHHHHHHHhc
Q 010709 301 ----H------------------------------------------------------QTLLFSATMPVEIEALAQEYL 322 (503)
Q Consensus 301 ----~------------------------------------------------------q~i~~SAT~~~~~~~~~~~~~ 322 (503)
- ++.+||+|...+-..+..-|.
T Consensus 307 IVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~ 386 (822)
T COG0653 307 IVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYG 386 (822)
T ss_pred EEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccC
Confidence 0 111222222111111111111
Q ss_pred CCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEE
Q 010709 323 TDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAV 402 (503)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~ 402 (503)
-+ +.+........ ..-..-.......+|....+..+...... +.|+||-..+.+..+.+.+.|.+.|++..
T Consensus 387 l~-vv~iPTnrp~~-R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~-------gqPvLvgT~sie~SE~ls~~L~~~~i~h~ 457 (822)
T COG0653 387 LD-VVVIPTNRPII-RLDEPDLVYKTEEEKFKAIVEDIKERHEK-------GQPVLVGTVSIEKSELLSKLLRKAGIPHN 457 (822)
T ss_pred Cc-eeeccCCCccc-CCCCccccccchHHHHHHHHHHHHHHHhc-------CCCEEEcCcceecchhHHHHHHhcCCCce
Confidence 11 11111111111 11111223335567888888887776543 44799999999999999999999999988
Q ss_pred EEcCCCCHHHHHHHHHHHhcCC-CcEEEEccccccCCCCCCCC-----------EEEEccCCCChhHHHHhhCcceeeee
Q 010709 403 ALHGGRNQSDRESALRDFRNGS-TNILVATDVASRGLDVMGVA-----------HVVNLDLPKVLLAASESLCTTSFNIT 470 (503)
Q Consensus 403 ~lh~~~~~~~r~~~~~~f~~g~-~~vLvaT~~~~~Gldip~v~-----------~VI~~~~p~s~~~~~Qr~GR~gR~~~ 470 (503)
.+.......+-..+-+ .|. -.|-|||++++||-||.--. +||-...-.|..-=.|--||+||..
T Consensus 458 VLNAk~h~~EA~Iia~---AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQG- 533 (822)
T COG0653 458 VLNAKNHAREAEIIAQ---AGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQG- 533 (822)
T ss_pred eeccccHHHHHHHHhh---cCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCC-
Confidence 8887776444443333 343 35789999999999987322 4555555666655568889999874
Q ss_pred eccCchhhhhhHHHHHHHHHHH
Q 010709 471 TNLDGDMKKLEFCLILAITVLL 492 (503)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~ 492 (503)
+...-.++..++|++..
T Consensus 534 -----DpG~S~F~lSleD~L~r 550 (822)
T COG0653 534 -----DPGSSRFYLSLEDDLMR 550 (822)
T ss_pred -----CcchhhhhhhhHHHHHH
Confidence 34445556666666543
No 170
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.98 E-value=2e-08 Score=92.60 Aligned_cols=129 Identities=26% Similarity=0.344 Sum_probs=95.2
Q ss_pred CCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhcc
Q 010709 141 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (503)
Q Consensus 141 ~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~ 220 (503)
-..|++.|..+.-.+.+|+ |+...||-|||++..+|+....+. |..|-|++.+..||..=++.+..+...
T Consensus 75 g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~--------G~~V~vvT~NdyLA~RD~~~~~~~y~~ 144 (266)
T PF07517_consen 75 GLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ--------GKGVHVVTSNDYLAKRDAEEMRPFYEF 144 (266)
T ss_dssp S----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT--------SS-EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh--------cCCcEEEeccHHHhhccHHHHHHHHHH
Confidence 3479999999998886665 999999999999888777766554 677999999999999999999999887
Q ss_pred CCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHH-HHHHcC----C--CCCCCccEEEecchhHHh
Q 010709 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFL-DHLQQG----N--TSLSRVSFVILDEADRML 282 (503)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~-~~l~~~----~--~~l~~~~~vViDEaH~l~ 282 (503)
+ ++.++++.++....+.... ..++|+++|...+. +.+... . .....+.++||||+|.++
T Consensus 145 L-Glsv~~~~~~~~~~~r~~~--Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 145 L-GLSVGIITSDMSSEERREA--YAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp T-T--EEEEETTTEHHHHHHH--HHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred h-hhccccCccccCHHHHHHH--HhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 7 6999999998876543332 34789999998884 333321 1 125678999999999754
No 171
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.79 E-value=2e-09 Score=112.00 Aligned_cols=230 Identities=17% Similarity=0.216 Sum_probs=141.8
Q ss_pred CCcHHHHHHHHHHhc-CCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccC
Q 010709 143 RPTSIQAQAMPVALS-GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (503)
Q Consensus 143 ~~~~~Q~~~i~~i~~-~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~ 221 (503)
...|.|.+.+..+.+ ..++++-+|||+|||++|.+.++......+ +.++++++|..+|+..-.+.+......
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p------~~kvvyIap~kalvker~~Dw~~r~~~- 999 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYP------GSKVVYIAPDKALVKERSDDWSKRDEL- 999 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCC------CccEEEEcCCchhhcccccchhhhccc-
Confidence 345566666666554 356999999999999999988887665543 578999999999988877777765533
Q ss_pred CCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHc--CCCCCCCccEEEecchhHHhhCCCHHHHHHHHHh---
Q 010709 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ--GNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN--- 296 (503)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~--~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~--- 296 (503)
+++++.-+.|+....- ..+ ..++++|+||++....... ..-.+++++.+|+||.|.+ +.++++.++.+...
T Consensus 1000 ~g~k~ie~tgd~~pd~--~~v-~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hll-g~~rgPVle~ivsr~n~ 1075 (1230)
T KOG0952|consen 1000 PGIKVIELTGDVTPDV--KAV-READIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLL-GEDRGPVLEVIVSRMNY 1075 (1230)
T ss_pred CCceeEeccCccCCCh--hhe-ecCceEEcccccccCccccccchhhhccccceeecccccc-cCCCcceEEEEeecccc
Confidence 3677887877765541 112 3489999999999776663 3456889999999999955 44455544444332
Q ss_pred ----CCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCC-ceEEEEEEcChhhHHHHHHHHHHHHHHhhhccC
Q 010709 297 ----LPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTA-NVIQILEKVSENEKVDRLLALLVEEAFLAEKSC 371 (503)
Q Consensus 297 ----~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~ 371 (503)
..+.+|++++|.-+ .+..++ .++++.+.. .+......+ .....+...+. .-.--....+.+...+..+..
T Consensus 1076 ~s~~t~~~vr~~glsta~-~na~dl-a~wl~~~~~--~nf~~svrpvp~~~~i~gfp~-~~~cprm~smnkpa~qaik~~ 1150 (1230)
T KOG0952|consen 1076 ISSQTEEPVRYLGLSTAL-ANANDL-ADWLNIKDM--YNFRPSVRPVPLEVHIDGFPG-QHYCPRMMSMNKPAFQAIKTH 1150 (1230)
T ss_pred CccccCcchhhhhHhhhh-hccHHH-HHHhCCCCc--CCCCcccccCCceEeecCCCc-hhcchhhhhcccHHHHHHhcC
Confidence 23456677766444 233333 334433222 122121111 22223333332 111111112233445555666
Q ss_pred CCCCcEEEEEcchhhHH
Q 010709 372 HPFPLTIVFVERKTRCD 388 (503)
Q Consensus 372 ~~~~~~lIF~~~~~~~~ 388 (503)
.|..++|||+.+++.-.
T Consensus 1151 sp~~p~lifv~srrqtr 1167 (1230)
T KOG0952|consen 1151 SPIKPVLIFVSSRRQTR 1167 (1230)
T ss_pred CCCCceEEEeecccccc
Confidence 88899999999977643
No 172
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.77 E-value=6.9e-08 Score=102.76 Aligned_cols=144 Identities=17% Similarity=0.248 Sum_probs=86.4
Q ss_pred CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHH-----HHhcc-CCC--ceEEEEE
Q 010709 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVK-----ALSRS-LDS--FKTAIVV 230 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~-----~~~~~-~~~--~~~~~~~ 230 (503)
.++.+.++||+|||.+|+-.++......+ ..++||+||+.++...+...+. .++.. ..+ +....+.
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~------~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~ 133 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYG------LFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVIN 133 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcC------CcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEe
Confidence 36899999999999999766655443332 4679999999998887775554 22221 112 3333333
Q ss_pred CCc-------cHHHHHHHhh-------CCCcEEEECcHHHHHHHH-cCC----------CCCCCc----cEEEecchhHH
Q 010709 231 GGT-------NIAEQRSELR-------GGVSIVVATPGRFLDHLQ-QGN----------TSLSRV----SFVILDEADRM 281 (503)
Q Consensus 231 ~~~-------~~~~~~~~~~-------~~~~Ilv~Tp~~l~~~l~-~~~----------~~l~~~----~~vViDEaH~l 281 (503)
++. ......+.+. +...|+|+|.+.|..... +.. ..+..+ -+||+||.|++
T Consensus 134 S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~ 213 (986)
T PRK15483 134 AGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRF 213 (986)
T ss_pred cCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCC
Confidence 322 1122222222 147899999999865322 100 111111 27999999987
Q ss_pred hhCCCHHHHHHHHHhCCCCCcEEEEEeeCCH
Q 010709 282 LDMGFEPQIREVMQNLPDKHQTLLFSATMPV 312 (503)
Q Consensus 282 ~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~ 312 (503)
-.. ...+..+ ..++|.+ ++.+|||.+.
T Consensus 214 ~~~--~k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 214 PRD--NKFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred Ccc--hHHHHHH-HhcCccc-EEEEeeecCC
Confidence 442 3345555 6666555 6779999976
No 173
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.73 E-value=5.5e-07 Score=92.54 Aligned_cols=55 Identities=7% Similarity=-0.007 Sum_probs=48.1
Q ss_pred CCcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCcceeeeeeccCchhh
Q 010709 424 STNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFNITTNLDGDMK 478 (503)
Q Consensus 424 ~~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~~~~~~~~~~~ 478 (503)
-.+.+++-.++-+|.|=|+|=.++-+....|..+-.|.+||.=|.-......++.
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~ 537 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVT 537 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceec
Confidence 4789999999999999999999999999999999999999988876666554444
No 174
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.71 E-value=2e-07 Score=99.16 Aligned_cols=70 Identities=16% Similarity=0.097 Sum_probs=58.2
Q ss_pred hhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCC
Q 010709 242 LRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMP 311 (503)
Q Consensus 242 ~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~ 311 (503)
+.....|+++||..|..-+..+.+.+..+..|||||||++.+..-...+.++.+..++..-+.+|||.|.
T Consensus 4 ly~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 4 VYLEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred HhhcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 3455789999999998888888999999999999999999877666667777777666666888888883
No 175
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.58 E-value=3.1e-07 Score=82.13 Aligned_cols=123 Identities=21% Similarity=0.302 Sum_probs=72.8
Q ss_pred CCcHHHHHHHHHHhcCCC--eEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhcc
Q 010709 143 RPTSIQAQAMPVALSGRD--LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (503)
Q Consensus 143 ~~~~~Q~~~i~~i~~~~~--vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~ 220 (503)
++++-|.+++..++.+++ +++.|+.|+|||... ..+...+... +.++++++||...+..+.+...
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~~-------g~~v~~~apT~~Aa~~L~~~~~----- 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEAA-------GKRVIGLAPTNKAAKELREKTG----- 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHHT-------T--EEEEESSHHHHHHHHHHHT-----
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHhC-------CCeEEEECCcHHHHHHHHHhhC-----
Confidence 367889999999976543 788899999999753 3344444332 5779999999988776555421
Q ss_pred CCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCC----CCCCCccEEEecchhHHhhCCCHHHHHHHHHh
Q 010709 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN----TSLSRVSFVILDEADRMLDMGFEPQIREVMQN 296 (503)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~----~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~ 296 (503)
+. ..|...++....... ..+...++||||||-.+. ...+..++..
T Consensus 68 ---~~------------------------a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~ 116 (196)
T PF13604_consen 68 ---IE------------------------AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRL 116 (196)
T ss_dssp ---S-------------------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHH
T ss_pred ---cc------------------------hhhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHH
Confidence 11 122222221111110 115567899999999654 4567778887
Q ss_pred CCC-CCcEEEEEee
Q 010709 297 LPD-KHQTLLFSAT 309 (503)
Q Consensus 297 ~~~-~~q~i~~SAT 309 (503)
.+. ..++|++--+
T Consensus 117 ~~~~~~klilvGD~ 130 (196)
T PF13604_consen 117 AKKSGAKLILVGDP 130 (196)
T ss_dssp S-T-T-EEEEEE-T
T ss_pred HHhcCCEEEEECCc
Confidence 766 6666666543
No 176
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.50 E-value=2e-05 Score=80.22 Aligned_cols=93 Identities=18% Similarity=0.273 Sum_probs=72.0
Q ss_pred CcEEEEEcchhhHHHHHHHHHHCC------------------CeEEEEcCCCCHHHHHHHHHHHhcCC---CcEEEEccc
Q 010709 375 PLTIVFVERKTRCDEVSEALVAEG------------------LHAVALHGGRNQSDRESALRDFRNGS---TNILVATDV 433 (503)
Q Consensus 375 ~~~lIF~~~~~~~~~l~~~L~~~~------------------~~v~~lh~~~~~~~r~~~~~~f~~g~---~~vLvaT~~ 433 (503)
.++|||.......+.+.+.|.+.. .....+.|..+..+|.+.+++|.+.- --++++|.+
T Consensus 720 ~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstra 799 (1387)
T KOG1016|consen 720 EKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRA 799 (1387)
T ss_pred ceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcc
Confidence 457888888888888888886531 23456788889999999999998632 347889999
Q ss_pred cccCCCCCCCCEEEEccCCCChhHHHHhhCccee
Q 010709 434 ASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSF 467 (503)
Q Consensus 434 ~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR 467 (503)
...|||+=+.+.+|.||.-++..--.|.+.|+-|
T Consensus 800 g~lGinLIsanr~~ifda~wnpchdaqavcRvyr 833 (1387)
T KOG1016|consen 800 GSLGINLISANRCIIFDACWNPCHDAQAVCRVYR 833 (1387)
T ss_pred ccccceeeccceEEEEEeecCccccchhhhhhhh
Confidence 9999999988899999988887666665555443
No 177
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.49 E-value=1e-06 Score=81.46 Aligned_cols=72 Identities=24% Similarity=0.328 Sum_probs=50.5
Q ss_pred CcHHHHHHHHHHhcCCC-eEEEccCCCchhHHhHHHHHHHHHhc-CCCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q 010709 144 PTSIQAQAMPVALSGRD-LLGCAETGSGKTAAFTIPMIQHCVAQ-TPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (503)
Q Consensus 144 ~~~~Q~~~i~~i~~~~~-vii~~~TGsGKTl~~~lp~l~~~~~~-~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 216 (503)
+.+.|.+|+..++.... .+|.||+|+|||... ..++..+... .......+.++|+++|+...+..+.+.+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l-~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTL-ASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHH-HHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHH-HHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 56789999999998888 999999999999653 3444444210 000123468899999999999999988877
No 178
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.47 E-value=8.9e-07 Score=78.47 Aligned_cols=142 Identities=15% Similarity=0.258 Sum_probs=72.5
Q ss_pred CCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHH-------HHHH
Q 010709 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI-------EKEV 214 (503)
Q Consensus 142 ~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~-------~~~~ 214 (503)
...+..|..++.++.+.+-+++.||.|+|||+.++..++..+... ...+++|+-|..+....+ .+.+
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g------~~~kiii~Rp~v~~~~~lGflpG~~~eK~ 76 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG------EYDKIIITRPPVEAGEDLGFLPGDLEEKM 76 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT------S-SEEEEEE-S--TT----SS--------
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC------CCcEEEEEecCCCCccccccCCCCHHHHH
Confidence 345778999999999777799999999999998877777766542 346678887876532111 1111
Q ss_pred HHHhcc----CCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHH
Q 010709 215 KALSRS----LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQI 290 (503)
Q Consensus 215 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~ 290 (503)
..+... +..+. +.... ..+.....|-+.....+. + ..+. -.+||+|||+.+. ..++
T Consensus 77 ~p~~~p~~d~l~~~~-----~~~~~----~~~~~~~~Ie~~~~~~iR-----G-rt~~-~~~iIvDEaQN~t----~~~~ 136 (205)
T PF02562_consen 77 EPYLRPIYDALEELF-----GKEKL----EELIQNGKIEIEPLAFIR-----G-RTFD-NAFIIVDEAQNLT----PEEL 136 (205)
T ss_dssp -TTTHHHHHHHTTTS------TTCH----HHHHHTTSEEEEEGGGGT-----T---B--SEEEEE-SGGG------HHHH
T ss_pred HHHHHHHHHHHHHHh-----ChHhH----HHHhhcCeEEEEehhhhc-----C-cccc-ceEEEEecccCCC----HHHH
Confidence 111100 00000 11111 111122344444433221 1 1122 3799999999765 6788
Q ss_pred HHHHHhCCCCCcEEEEEee
Q 010709 291 REVMQNLPDKHQTLLFSAT 309 (503)
Q Consensus 291 ~~il~~~~~~~q~i~~SAT 309 (503)
..++.++..+.+++++.-.
T Consensus 137 k~ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 137 KMILTRIGEGSKIIITGDP 155 (205)
T ss_dssp HHHHTTB-TT-EEEEEE--
T ss_pred HHHHcccCCCcEEEEecCc
Confidence 9999999988988876543
No 179
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.31 E-value=2.7e-06 Score=84.68 Aligned_cols=66 Identities=27% Similarity=0.384 Sum_probs=53.0
Q ss_pred CCCcHHHHHHHHHHhcCCC-eEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHH
Q 010709 142 TRPTSIQAQAMPVALSGRD-LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVK 215 (503)
Q Consensus 142 ~~~~~~Q~~~i~~i~~~~~-vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~ 215 (503)
..+.+-|.+|+....+.++ .+|.||+|+|||... .-++..+..+ +.++|+.+||.+.+.-+.+++.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~Tl-vEiI~qlvk~-------~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTL-VEIISQLVKQ-------KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeH-HHHHHHHHHc-------CCeEEEEcCchHHHHHHHHHhc
Confidence 4567779999999998876 899999999999875 4455555554 6889999999998888877543
No 180
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.27 E-value=1.2e-05 Score=79.68 Aligned_cols=144 Identities=22% Similarity=0.241 Sum_probs=71.8
Q ss_pred EEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHH----HH
Q 010709 163 GCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA----EQ 238 (503)
Q Consensus 163 i~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 238 (503)
..++||||||++....+| ++...+ ....|+.|..-..+......+..-...---+.-.+.+++.... ..
T Consensus 2 f~matgsgkt~~ma~lil-~~y~kg------yr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~ 74 (812)
T COG3421 2 FEMATGSGKTLVMAGLIL-ECYKKG------YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNN 74 (812)
T ss_pred cccccCCChhhHHHHHHH-HHHHhc------hhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecc
Confidence 457899999997644444 333321 3446777766555444433222110000000111111221110 11
Q ss_pred HHHhhCCCcEEEECcHHHHHHHHcCC---C---CCCCccEE-EecchhHHhhCC---------CHHHHHHHHH-hC--CC
Q 010709 239 RSELRGGVSIVVATPGRFLDHLQQGN---T---SLSRVSFV-ILDEADRMLDMG---------FEPQIREVMQ-NL--PD 299 (503)
Q Consensus 239 ~~~~~~~~~Ilv~Tp~~l~~~l~~~~---~---~l~~~~~v-ViDEaH~l~~~~---------~~~~~~~il~-~~--~~ 299 (503)
......+..|+++|.+.|...+.+.. . .+.+.++| +-||||++-... -...|+..+. .+ .+
T Consensus 75 fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nk 154 (812)
T COG3421 75 FSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNK 154 (812)
T ss_pred cCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCC
Confidence 11234567899999999977665532 2 34455554 559999875321 1122222221 11 33
Q ss_pred CCcEEEEEeeCCHH
Q 010709 300 KHQTLLFSATMPVE 313 (503)
Q Consensus 300 ~~q~i~~SAT~~~~ 313 (503)
+.-++.+|||.|.+
T Consensus 155 d~~~lef~at~~k~ 168 (812)
T COG3421 155 DNLLLEFSATIPKE 168 (812)
T ss_pred CceeehhhhcCCcc
Confidence 44467789999843
No 181
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.27 E-value=2.2e-05 Score=78.78 Aligned_cols=77 Identities=19% Similarity=0.222 Sum_probs=63.4
Q ss_pred HHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHH
Q 010709 135 DIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 214 (503)
Q Consensus 135 ~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~ 214 (503)
.+...++.++..-|..|+.+++++.-.||.||+|+|||... ..++.++..+ .+..+|+++|+...+.|+++.+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvts-a~IVyhl~~~------~~~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQ------HAGPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehh-HHHHHHHHHh------cCCceEEEcccchhHHHHHHHH
Confidence 44456778889999999999999999999999999999875 4455555554 2566999999999999999999
Q ss_pred HHHh
Q 010709 215 KALS 218 (503)
Q Consensus 215 ~~~~ 218 (503)
.+-+
T Consensus 475 h~tg 478 (935)
T KOG1802|consen 475 HKTG 478 (935)
T ss_pred HhcC
Confidence 8765
No 182
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.26 E-value=1.6e-05 Score=73.72 Aligned_cols=160 Identities=16% Similarity=0.188 Sum_probs=101.1
Q ss_pred CCcHHHHHHHHHHh----------cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHH
Q 010709 143 RPTSIQAQAMPVAL----------SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEK 212 (503)
Q Consensus 143 ~~~~~Q~~~i~~i~----------~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~ 212 (503)
.+...|.+++-... .+.-.++-..||.||--+..--++..++.- .++.|++..+..|-....+
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G-------r~r~vwvS~s~dL~~Da~R 109 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG-------RKRAVWVSVSNDLKYDAER 109 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC-------CCceEEEECChhhhhHHHH
Confidence 46777888875543 123489999999999986654455554441 3568999999999999999
Q ss_pred HHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcC---CCCC--------CC-ccEEEecchhH
Q 010709 213 EVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG---NTSL--------SR-VSFVILDEADR 280 (503)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~---~~~l--------~~-~~~vViDEaH~ 280 (503)
.++.++... +.+..+..-.. . ....-...|+++|+..|...-... ...+ .+ =.+||+||||+
T Consensus 110 Dl~DIG~~~--i~v~~l~~~~~-~---~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~ 183 (303)
T PF13872_consen 110 DLRDIGADN--IPVHPLNKFKY-G---DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHK 183 (303)
T ss_pred HHHHhCCCc--ccceechhhcc-C---cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchh
Confidence 999887542 22222211000 0 001224579999999987765321 1111 11 24899999998
Q ss_pred HhhCCC--------HHHHHHHHHhCCCCCcEEEEEeeCCHHHHH
Q 010709 281 MLDMGF--------EPQIREVMQNLPDKHQTLLFSATMPVEIEA 316 (503)
Q Consensus 281 l~~~~~--------~~~~~~il~~~~~~~q~i~~SAT~~~~~~~ 316 (503)
+.+..- +..+..+..++|. -+++.+|||-..+.++
T Consensus 184 akn~~~~~~~~sk~g~avl~LQ~~LP~-ARvvY~SATgasep~N 226 (303)
T PF13872_consen 184 AKNLSSGSKKPSKTGIAVLELQNRLPN-ARVVYASATGASEPRN 226 (303)
T ss_pred cCCCCccCccccHHHHHHHHHHHhCCC-CcEEEecccccCCCce
Confidence 766532 2345556666754 4599999998555443
No 183
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.20 E-value=8.2e-06 Score=80.24 Aligned_cols=108 Identities=18% Similarity=0.297 Sum_probs=68.6
Q ss_pred CeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHH
Q 010709 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR 239 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (503)
.++|.|..|+|||+.+ +-++..+. ....+..++++++...|...+.+.+..-...
T Consensus 3 v~~I~G~aGTGKTvla-~~l~~~l~-----~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~------------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLA-LNLAKELQ-----NSEEGKKVLYLCGNHPLRNKLREQLAKKYNP------------------- 57 (352)
T ss_pred EEEEEecCCcCHHHHH-HHHHHHhh-----ccccCCceEEEEecchHHHHHHHHHhhhccc-------------------
Confidence 4799999999999865 33444431 1123677899999999988777777553200
Q ss_pred HHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCC-------CHHHHHHHHHh
Q 010709 240 SELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-------FEPQIREVMQN 296 (503)
Q Consensus 240 ~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~-------~~~~~~~il~~ 296 (503)
......+..+..+.+.+.........+++|||||||++...+ ....+..+++.
T Consensus 58 ----~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 ----KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred ----chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 001223444444444333223456789999999999998731 24566666666
No 184
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.19 E-value=1.7e-05 Score=82.65 Aligned_cols=142 Identities=20% Similarity=0.287 Sum_probs=87.3
Q ss_pred cHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCc
Q 010709 145 TSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSF 224 (503)
Q Consensus 145 ~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~ 224 (503)
.++|+.|+...+.++-++|.|++|+|||++. ..++..+.... .....++++++||...|..+.+.+........ .
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v-~~ll~~l~~~~---~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~-~ 228 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTV-AKLLAALIQLA---DGERCRIRLAAPTGKAAARLTESLGKALRQLP-L 228 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH-HHHHHHHHHhc---CCCCcEEEEECCcHHHHHHHHHHHHhhhhccc-c
Confidence 5899999999999889999999999999864 33444443321 11235688889999988888877765442221 0
Q ss_pred eEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHc------CCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhCC
Q 010709 225 KTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ------GNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP 298 (503)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~------~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~ 298 (503)
. ... ......-..|..+|+..... +....-.+++|||||+-.+ + ...+..++..++
T Consensus 229 ~----------~~~----~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv-d---~~lm~~ll~al~ 290 (615)
T PRK10875 229 T----------DEQ----KKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV-D---LPMMARLIDALP 290 (615)
T ss_pred c----------hhh----hhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc-c---HHHHHHHHHhcc
Confidence 0 000 00001112233333221111 1112335689999999843 2 556778888899
Q ss_pred CCCcEEEEEee
Q 010709 299 DKHQTLLFSAT 309 (503)
Q Consensus 299 ~~~q~i~~SAT 309 (503)
+..++|++.-.
T Consensus 291 ~~~rlIlvGD~ 301 (615)
T PRK10875 291 PHARVIFLGDR 301 (615)
T ss_pred cCCEEEEecch
Confidence 88888887543
No 185
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.17 E-value=4.9e-06 Score=86.81 Aligned_cols=93 Identities=16% Similarity=0.183 Sum_probs=78.8
Q ss_pred CcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCC-Cc-EEEEccccccCCCCCCCCEEEEccCC
Q 010709 375 PLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGS-TN-ILVATDVASRGLDVMGVAHVVNLDLP 452 (503)
Q Consensus 375 ~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~-~~-vLvaT~~~~~Gldip~v~~VI~~~~p 452 (503)
++++||++-...+..+...|...++....+.|.|+...|.+.+..|..+. .. .+++..+...|+++..+.+|+..|+-
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 48999999999999999999988999999999999999999999998543 23 45677999999999999999999999
Q ss_pred CChhHHHHhhCccee
Q 010709 453 KVLLAASESLCTTSF 467 (503)
Q Consensus 453 ~s~~~~~Qr~GR~gR 467 (503)
+++..-.|-+-|+.|
T Consensus 620 wnp~~eeQaidR~hr 634 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHR 634 (674)
T ss_pred cChHHHHHHHHHHHH
Confidence 888665554444433
No 186
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.17 E-value=2.4e-05 Score=81.29 Aligned_cols=142 Identities=21% Similarity=0.291 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCce
Q 010709 146 SIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFK 225 (503)
Q Consensus 146 ~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~ 225 (503)
++|+.++..++.++-++|.|+.|+|||+.. ..++..+...... ..+.++++++||-..|..+.+.+......+.
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~~~--~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~--- 221 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTV-ARLLLALVKQSPK--QGKLRIALAAPTGKAAARLAESLRKAVKNLA--- 221 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHH-HHHHHHHHHhccc--cCCCcEEEECCcHHHHHHHHHHHHhhhcccc---
Confidence 789999999999999999999999999864 4444444332110 0135799999999888887777655432211
Q ss_pred EEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHc------CCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhCCC
Q 010709 226 TAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ------GNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPD 299 (503)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~------~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~ 299 (503)
.. .. ......+-..|..+|+..... .......+++||||||=++ + ...+..++..+++
T Consensus 222 ~~--------~~----~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMv-d---~~l~~~ll~al~~ 285 (586)
T TIGR01447 222 AA--------EA----LIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMV-D---LPLMAKLLKALPP 285 (586)
T ss_pred cc--------hh----hhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccC-C---HHHHHHHHHhcCC
Confidence 00 00 000011123343333322110 1112335789999999843 2 4567788888888
Q ss_pred CCcEEEEEee
Q 010709 300 KHQTLLFSAT 309 (503)
Q Consensus 300 ~~q~i~~SAT 309 (503)
..++|++.-.
T Consensus 286 ~~rlIlvGD~ 295 (586)
T TIGR01447 286 NTKLILLGDK 295 (586)
T ss_pred CCEEEEECCh
Confidence 8888876433
No 187
>PRK10536 hypothetical protein; Provisional
Probab=98.15 E-value=5.8e-05 Score=68.91 Aligned_cols=147 Identities=18% Similarity=0.204 Sum_probs=80.6
Q ss_pred CCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHH-------HH
Q 010709 139 HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQ-------IE 211 (503)
Q Consensus 139 ~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q-------~~ 211 (503)
.++...+..|...+.++.++..+++.||+|+|||+.+....+..+... .-.+++|.=|+.+.... ..
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~------~~~kIiI~RP~v~~ge~LGfLPG~~~ 128 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK------DVDRIIVTRPVLQADEDLGFLPGDIA 128 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC------CeeEEEEeCCCCCchhhhCcCCCCHH
Confidence 455667888999999888877899999999999987755555444331 13445555576542211 12
Q ss_pred HHHHHHhccCCCceEEEEECCccHHHHHHHhh-CCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHH
Q 010709 212 KEVKALSRSLDSFKTAIVVGGTNIAEQRSELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQI 290 (503)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~ 290 (503)
+.+..|...+-+.- ..+.+...... .+. ..-.|-|.... ++. +. .+ +-++||+|||+.+- ...+
T Consensus 129 eK~~p~~~pi~D~L-~~~~~~~~~~~---~~~~~~~~Iei~~l~----ymR-Gr-tl-~~~~vIvDEaqn~~----~~~~ 193 (262)
T PRK10536 129 EKFAPYFRPVYDVL-VRRLGASFMQY---CLRPEIGKVEIAPFA----YMR-GR-TF-ENAVVILDEAQNVT----AAQM 193 (262)
T ss_pred HHHHHHHHHHHHHH-HHHhChHHHHH---HHHhccCcEEEecHH----Hhc-CC-cc-cCCEEEEechhcCC----HHHH
Confidence 22222221110000 00011111111 111 12234444321 222 11 22 23799999999764 5778
Q ss_pred HHHHHhCCCCCcEEEE
Q 010709 291 REVMQNLPDKHQTLLF 306 (503)
Q Consensus 291 ~~il~~~~~~~q~i~~ 306 (503)
..++.++..+.++|++
T Consensus 194 k~~ltR~g~~sk~v~~ 209 (262)
T PRK10536 194 KMFLTRLGENVTVIVN 209 (262)
T ss_pred HHHHhhcCCCCEEEEe
Confidence 8889999888877764
No 188
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.09 E-value=6.3e-05 Score=67.37 Aligned_cols=128 Identities=21% Similarity=0.288 Sum_probs=82.6
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhc---CCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEE
Q 010709 122 SFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALS---GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLAL 198 (503)
Q Consensus 122 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~---~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~l 198 (503)
.|+....+.+++=++.. -...++.|.+....+.+ |++.+...-+|.|||.+. +|++...+..+ ..-+.
T Consensus 4 ~w~p~~~P~wLl~E~e~--~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI-~Pmla~~LAdg------~~Lvr 74 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIES--NILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVI-VPMLALALADG------SRLVR 74 (229)
T ss_pred CCCchhChHHHHHHHHc--CceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchH-HHHHHHHHcCC------CcEEE
Confidence 35555566777655543 34678899999988874 578999999999999974 99999888752 34566
Q ss_pred EEcccHHHHHHHHHHHHHHhccCCCceEEEE-EC-CccH--H--HHH----HHhhCCCcEEEECcHHHHHH
Q 010709 199 VLAPTRELAQQIEKEVKALSRSLDSFKTAIV-VG-GTNI--A--EQR----SELRGGVSIVVATPGRFLDH 259 (503)
Q Consensus 199 il~Ptr~La~q~~~~~~~~~~~~~~~~~~~~-~~-~~~~--~--~~~----~~~~~~~~Ilv~Tp~~l~~~ 259 (503)
+++|. +|..|..+.++.-....-+-.+..+ +. .... . ... ........|+++||+.++.+
T Consensus 75 viVpk-~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf 144 (229)
T PF12340_consen 75 VIVPK-ALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSF 144 (229)
T ss_pred EEcCH-HHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHH
Confidence 77776 6889998888755433322222211 11 1111 1 111 12224567999999988543
No 189
>PF13245 AAA_19: Part of AAA domain
Probab=98.06 E-value=2.3e-05 Score=57.83 Aligned_cols=60 Identities=32% Similarity=0.456 Sum_probs=40.7
Q ss_pred HHHHHhcCCC-eEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHH
Q 010709 151 AMPVALSGRD-LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 214 (503)
Q Consensus 151 ~i~~i~~~~~-vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~ 214 (503)
++...+.+.. ++|.||+|+|||... +..+.++.... ... +.++++++|++..+..+.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~-~~~i~~l~~~~--~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTL-AARIAELLAAR--ADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHH-HHHHHHHHHHh--cCC-CCeEEEECCCHHHHHHHHHHH
Confidence 4443334444 667999999999765 44444444321 112 577999999999999888877
No 190
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.04 E-value=5.7e-05 Score=80.86 Aligned_cols=126 Identities=21% Similarity=0.189 Sum_probs=78.4
Q ss_pred CCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccC
Q 010709 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (503)
Q Consensus 142 ~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~ 221 (503)
..+++.|.+|+..+..++.++|.|+.|+|||+.. -.++..+.... ....+++++||-..|..+.+..
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~-----~~~~v~l~ApTg~AA~~L~e~~------- 388 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELG-----GLLPVGLAAPTGRAAKRLGEVT------- 388 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcC-----CCceEEEEeCchHHHHHHHHhc-------
Confidence 4789999999999998888999999999999853 33343333221 1156888899987776544321
Q ss_pred CCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHc-----CCCCCCCccEEEecchhHHhhCCCHHHHHHHHHh
Q 010709 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ-----GNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN 296 (503)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~-----~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~ 296 (503)
+... .|..+++..... ..-.....++||||||+.+. ...+..++..
T Consensus 389 -g~~a------------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd----~~~~~~Ll~~ 439 (720)
T TIGR01448 389 -GLTA------------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMD----TWLALSLLAA 439 (720)
T ss_pred -CCcc------------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccccCC----HHHHHHHHHh
Confidence 0100 011111110000 00112357899999999653 4456777888
Q ss_pred CCCCCcEEEEEee
Q 010709 297 LPDKHQTLLFSAT 309 (503)
Q Consensus 297 ~~~~~q~i~~SAT 309 (503)
++...++|++.-+
T Consensus 440 ~~~~~rlilvGD~ 452 (720)
T TIGR01448 440 LPDHARLLLVGDT 452 (720)
T ss_pred CCCCCEEEEECcc
Confidence 8888888876443
No 191
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.00 E-value=6.4e-05 Score=79.24 Aligned_cols=67 Identities=25% Similarity=0.338 Sum_probs=54.0
Q ss_pred CCCcHHHHHHHHHHhcC-CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q 010709 142 TRPTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (503)
Q Consensus 142 ~~~~~~Q~~~i~~i~~~-~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 216 (503)
..+.+.|.+|+..++.. ..++|.||+|+|||... ..++..+... +.++|+++||...+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~-~~ii~~~~~~-------g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTL-VELIRQLVKR-------GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHH-HHHHHHHHHc-------CCCEEEEcCcHHHHHHHHHHHHh
Confidence 46789999999998876 45899999999999764 4445554443 56899999999999999888876
No 192
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.93 E-value=8e-06 Score=71.02 Aligned_cols=79 Identities=25% Similarity=0.317 Sum_probs=58.6
Q ss_pred CCCcEEEEEcchhhHHHHHHHHHHCCC--eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc--ccccCCCCCC--CCEE
Q 010709 373 PFPLTIVFVERKTRCDEVSEALVAEGL--HAVALHGGRNQSDRESALRDFRNGSTNILVATD--VASRGLDVMG--VAHV 446 (503)
Q Consensus 373 ~~~~~lIF~~~~~~~~~l~~~L~~~~~--~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~--~~~~Gldip~--v~~V 446 (503)
.++.+|||+++....+.+.+.+..... ....+.. ...++..+++.|++++..||+++. .+.+|+|+|+ ++.|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~v 85 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAV 85 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhee
Confidence 346799999999999999999976532 1122222 245778999999999999999998 9999999996 7899
Q ss_pred EEccCCC
Q 010709 447 VNLDLPK 453 (503)
Q Consensus 447 I~~~~p~ 453 (503)
|..++|-
T Consensus 86 ii~glPf 92 (167)
T PF13307_consen 86 IIVGLPF 92 (167)
T ss_dssp EEES---
T ss_pred eecCCCC
Confidence 9999883
No 193
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.79 E-value=0.0002 Score=67.49 Aligned_cols=144 Identities=15% Similarity=0.198 Sum_probs=88.7
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCC--eEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHH-----
Q 010709 138 FHEYTRPTSIQAQAMPVALSGRD--LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI----- 210 (503)
Q Consensus 138 ~~~~~~~~~~Q~~~i~~i~~~~~--vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~----- 210 (503)
..|+..-...|.-|+..++.-.- |.+.|+.|+|||+.++.+.+...+.++. ..++|+.=|+..+.+.+
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~-----y~KiiVtRp~vpvG~dIGfLPG 297 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR-----YRKIIVTRPTVPVGEDIGFLPG 297 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh-----hceEEEecCCcCcccccCcCCC
Confidence 45777777888889998886543 8899999999999888888887776532 35566666876654332
Q ss_pred --HHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCC----------ccEEEecch
Q 010709 211 --EKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSR----------VSFVILDEA 278 (503)
Q Consensus 211 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~----------~~~vViDEa 278 (503)
.+.+..|++.. .+....+.. .-=++.+.+...+.+..+.+.. =.+||||||
T Consensus 298 ~eEeKm~PWmq~i--------------~DnLE~L~~---~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEa 360 (436)
T COG1875 298 TEEEKMGPWMQAI--------------FDNLEVLFS---PNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEA 360 (436)
T ss_pred chhhhccchHHHH--------------HhHHHHHhc---ccccchHHHHHHHhccceeeeeeeeecccccccceEEEehh
Confidence 11111111110 011111111 1111234454444444332211 148999999
Q ss_pred hHHhhCCCHHHHHHHHHhCCCCCcEEEEE
Q 010709 279 DRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (503)
Q Consensus 279 H~l~~~~~~~~~~~il~~~~~~~q~i~~S 307 (503)
+.+- ..++..++.+..+..++|++.
T Consensus 361 QNLT----pheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 361 QNLT----PHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred hccC----HHHHHHHHHhccCCCEEEEcC
Confidence 9774 678999999999999888754
No 194
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.76 E-value=0.00013 Score=76.57 Aligned_cols=141 Identities=24% Similarity=0.200 Sum_probs=85.9
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCC-eEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccH
Q 010709 126 MCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRD-LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR 204 (503)
Q Consensus 126 ~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~-vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr 204 (503)
..+.|...+. ....+...|++|+-.++..+| .+|.|=+|+|||+.. ..++..+... |+++|+.+-|-
T Consensus 656 ~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI-~~LIkiL~~~-------gkkVLLtsyTh 723 (1100)
T KOG1805|consen 656 KVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTI-SLLIKILVAL-------GKKVLLTSYTH 723 (1100)
T ss_pred cccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhH-HHHHHHHHHc-------CCeEEEEehhh
Confidence 3455555543 334677889999999998887 899999999999864 3344444443 68899999998
Q ss_pred HHHHHHHHHHHHHhccCC----------CceEEEEECCccH--HHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccE
Q 010709 205 ELAQQIEKEVKALSRSLD----------SFKTAIVVGGTNI--AEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSF 272 (503)
Q Consensus 205 ~La~q~~~~~~~~~~~~~----------~~~~~~~~~~~~~--~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~ 272 (503)
..+..+.-.++.+.-.+- .+.-.+...+.+. -......-+.+.|+.+|---+.+. -+..+.+++
T Consensus 724 sAVDNILiKL~~~~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~p----lf~~R~FD~ 799 (1100)
T KOG1805|consen 724 SAVDNILIKLKGFGIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHP----LFVNRQFDY 799 (1100)
T ss_pred HHHHHHHHHHhccCcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCch----hhhccccCE
Confidence 877777666665542110 0000000111111 111223335677888884333322 245667999
Q ss_pred EEecchhHHh
Q 010709 273 VILDEADRML 282 (503)
Q Consensus 273 vViDEaH~l~ 282 (503)
+|||||-.+.
T Consensus 800 cIiDEASQI~ 809 (1100)
T KOG1805|consen 800 CIIDEASQIL 809 (1100)
T ss_pred EEEccccccc
Confidence 9999998643
No 195
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.76 E-value=0.00025 Score=73.88 Aligned_cols=77 Identities=19% Similarity=0.261 Sum_probs=47.7
Q ss_pred cEEEEEcchhhHHHHHHHHHHCC-------CeEEEEcCCCCHHHHHHHHHHHhc--------CCCcEEEEccccccCCCC
Q 010709 376 LTIVFVERKTRCDEVSEALVAEG-------LHAVALHGGRNQSDRESALRDFRN--------GSTNILVATDVASRGLDV 440 (503)
Q Consensus 376 ~~lIF~~~~~~~~~l~~~L~~~~-------~~v~~lh~~~~~~~r~~~~~~f~~--------g~~~vLvaT~~~~~Gldi 440 (503)
..|||+++....+.+..++...+ ++-+ +..=.+..+-.+++..|.+ |..-..||-...++|+|+
T Consensus 563 G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l-~vEPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGlDF 641 (945)
T KOG1132|consen 563 GLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKL-VVEPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGLDF 641 (945)
T ss_pred ceEEeccchHHHHHHHHHHHcchHHHHhhcccCc-eeccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCCCCc
Confidence 38999999988888866665432 1111 1111122333344444432 233455666889999999
Q ss_pred CC--CCEEEEccCCC
Q 010709 441 MG--VAHVVNLDLPK 453 (503)
Q Consensus 441 p~--v~~VI~~~~p~ 453 (503)
.+ .+.||..|+|.
T Consensus 642 sD~~~RaVI~tGlPy 656 (945)
T KOG1132|consen 642 SDDNGRAVIITGLPY 656 (945)
T ss_pred cccCCceeEEecCCC
Confidence 85 67899999874
No 196
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.70 E-value=0.00032 Score=76.63 Aligned_cols=123 Identities=20% Similarity=0.200 Sum_probs=75.7
Q ss_pred CCcHHHHHHHHHHhcCCC-eEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccC
Q 010709 143 RPTSIQAQAMPVALSGRD-LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (503)
Q Consensus 143 ~~~~~Q~~~i~~i~~~~~-vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~ 221 (503)
.+++-|.+++..++.+++ ++|.|..|+|||+. +-.+..++.. .|.+++.++||-..|..+.+. .
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~--l~~~~~~~e~------~G~~V~~~ApTGkAA~~L~e~-------t 410 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM--LGVAREAWEA------AGYEVRGAALSGIAAENLEGG-------S 410 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH--HHHHHHHHHH------cCCeEEEecCcHHHHHHHhhc-------c
Confidence 689999999999998665 89999999999985 3333333332 267799999997666543321 0
Q ss_pred CCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhC-CCC
Q 010709 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDK 300 (503)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~-~~~ 300 (503)
++.. .|...|..-...+...+...++|||||+-.+. ...+..++... +..
T Consensus 411 -Gi~a------------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~----~~~m~~LL~~a~~~g 461 (988)
T PRK13889 411 -GIAS------------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVG----TRQLERVLSHAADAG 461 (988)
T ss_pred -Ccch------------------------hhHHHHHhhhcccccccccCcEEEEECcccCC----HHHHHHHHHhhhhCC
Confidence 1110 12222221112223346677899999998543 33455666543 456
Q ss_pred CcEEEEEee
Q 010709 301 HQTLLFSAT 309 (503)
Q Consensus 301 ~q~i~~SAT 309 (503)
.++|++.=+
T Consensus 462 arvVLVGD~ 470 (988)
T PRK13889 462 AKVVLVGDP 470 (988)
T ss_pred CEEEEECCH
Confidence 677776544
No 197
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.66 E-value=0.00044 Score=74.48 Aligned_cols=122 Identities=16% Similarity=0.181 Sum_probs=73.7
Q ss_pred CCCcHHHHHHHHHHhcC-CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhcc
Q 010709 142 TRPTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (503)
Q Consensus 142 ~~~~~~Q~~~i~~i~~~-~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~ 220 (503)
..+++-|.+|+..++.+ +-++|.|+.|+|||+.. -.+...+.. .+..+++++||--.+..+.+..
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll--~~i~~~~~~------~g~~V~~~ApTg~Aa~~L~~~~------ 416 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML--KAAREAWEA------AGYRVIGAALSGKAAEGLQAES------ 416 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH--HHHHHHHHh------CCCeEEEEeCcHHHHHHHHhcc------
Confidence 35889999999999875 45899999999999753 333333332 2577999999977665543211
Q ss_pred CCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhC-CC
Q 010709 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PD 299 (503)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~-~~ 299 (503)
++.. .|..++.....+....+...++||||||-.+. ...+..++... ..
T Consensus 417 --g~~a------------------------~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~----~~~~~~Ll~~~~~~ 466 (744)
T TIGR02768 417 --GIES------------------------RTLASLEYAWANGRDLLSDKDVLVIDEAGMVG----SRQMARVLKEAEEA 466 (744)
T ss_pred --CCce------------------------eeHHHHHhhhccCcccCCCCcEEEEECcccCC----HHHHHHHHHHHHhc
Confidence 1111 12222211122223345678999999998543 23344555532 34
Q ss_pred CCcEEEEE
Q 010709 300 KHQTLLFS 307 (503)
Q Consensus 300 ~~q~i~~S 307 (503)
..++|++.
T Consensus 467 ~~kliLVG 474 (744)
T TIGR02768 467 GAKVVLVG 474 (744)
T ss_pred CCEEEEEC
Confidence 56666664
No 198
>PRK04296 thymidine kinase; Provisional
Probab=97.58 E-value=0.00013 Score=64.95 Aligned_cols=36 Identities=19% Similarity=0.250 Sum_probs=24.5
Q ss_pred CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcc
Q 010709 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 202 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~P 202 (503)
.-.++.||+|+|||+.. +-++...... +.+++++-|
T Consensus 3 ~i~litG~~GsGKTT~~-l~~~~~~~~~-------g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTEL-LQRAYNYEER-------GMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHH-HHHHHHHHHc-------CCeEEEEec
Confidence 34789999999999865 3344443332 567888766
No 199
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.56 E-value=0.00031 Score=58.28 Aligned_cols=19 Identities=42% Similarity=0.441 Sum_probs=12.7
Q ss_pred cCCCeEEEccCCCchhHHh
Q 010709 157 SGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~ 175 (503)
+++.++|.|++|+|||...
T Consensus 3 ~~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ----EEEEE-TTSSHHHHH
T ss_pred CCcccEEEcCCCCCHHHHH
Confidence 3456999999999999854
No 200
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.54 E-value=0.0011 Score=65.13 Aligned_cols=130 Identities=12% Similarity=0.164 Sum_probs=70.0
Q ss_pred CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc--ccHHHHHHHHHHHHHHhccCCCceEEEEECCccHH
Q 010709 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA--PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA 236 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~--Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (503)
+.++++||||+|||++..- +..++.... ...+.++.++. +.|.-+..+ ++.++..+ ++.+.
T Consensus 175 ~vi~lvGptGvGKTTT~aK-LA~~~~~~~---~~~g~~V~lit~Dt~R~aa~eQ---L~~~a~~l-gvpv~--------- 237 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAK-LAAIYGINS---DDKSLNIKIITIDNYRIGAKKQ---IQTYGDIM-GIPVK--------- 237 (388)
T ss_pred eEEEEECCCCCCHHHHHHH-HHHHHHhhh---ccCCCeEEEEeccCccHHHHHH---HHHHhhcC-CcceE---------
Confidence 4589999999999986532 222222110 01234455554 445544433 44444322 23221
Q ss_pred HHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCC-CHHHHHHHHHhCCCC-CcEEEEEeeCCH-H
Q 010709 237 EQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-FEPQIREVMQNLPDK-HQTLLFSATMPV-E 313 (503)
Q Consensus 237 ~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~-~~~~~~~il~~~~~~-~q~i~~SAT~~~-~ 313 (503)
.+.++..+...+.. +.++++|+||++.++.... ....+.+++....++ -.++.+|||... .
T Consensus 238 ------------~~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~ 301 (388)
T PRK12723 238 ------------AIESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSD 301 (388)
T ss_pred ------------eeCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHH
Confidence 11234444444432 3578999999999764221 234555666655443 356888999853 4
Q ss_pred HHHHHHHh
Q 010709 314 IEALAQEY 321 (503)
Q Consensus 314 ~~~~~~~~ 321 (503)
+...+..|
T Consensus 302 ~~~~~~~~ 309 (388)
T PRK12723 302 VKEIFHQF 309 (388)
T ss_pred HHHHHHHh
Confidence 55555655
No 201
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.49 E-value=0.0019 Score=71.26 Aligned_cols=124 Identities=19% Similarity=0.197 Sum_probs=76.1
Q ss_pred CCCcHHHHHHHHHHhcC-CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhcc
Q 010709 142 TRPTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (503)
Q Consensus 142 ~~~~~~Q~~~i~~i~~~-~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~ 220 (503)
..+++-|.+++..+..+ +-++|.|+.|+|||+.. -++.. .+.. .|.+++.++||-..|..+.+. .
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l-~~~~~-~~e~------~G~~V~g~ApTgkAA~~L~e~----~-- 445 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMM-KAARE-AWEA------AGYRVVGGALAGKAAEGLEKE----A-- 445 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHH-HHHHH-HHHH------cCCeEEEEcCcHHHHHHHHHh----h--
Confidence 46899999999988643 45999999999999853 33333 3332 267799999997666544321 1
Q ss_pred CCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhCC-C
Q 010709 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP-D 299 (503)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~-~ 299 (503)
++.. .|...++.....+...+..-++||||||..+. ...+..++.... .
T Consensus 446 --Gi~a------------------------~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~----~~~m~~Ll~~~~~~ 495 (1102)
T PRK13826 446 --GIQS------------------------RTLSSWELRWNQGRDQLDNKTVFVLDEAGMVA----SRQMALFVEAVTRA 495 (1102)
T ss_pred --CCCe------------------------eeHHHHHhhhccCccCCCCCcEEEEECcccCC----HHHHHHHHHHHHhc
Confidence 1211 12222211111222345667899999999543 445566666654 4
Q ss_pred CCcEEEEEee
Q 010709 300 KHQTLLFSAT 309 (503)
Q Consensus 300 ~~q~i~~SAT 309 (503)
..++|++.-+
T Consensus 496 garvVLVGD~ 505 (1102)
T PRK13826 496 GAKLVLVGDP 505 (1102)
T ss_pred CCEEEEECCH
Confidence 6677776544
No 202
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.46 E-value=0.00039 Score=67.33 Aligned_cols=123 Identities=23% Similarity=0.181 Sum_probs=74.3
Q ss_pred CcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCC
Q 010709 144 PTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDS 223 (503)
Q Consensus 144 ~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~ 223 (503)
+++-|.+++.. ..++++|.|..|||||.+.+.-+. +++.... ....++|++++|+..+..+.+++...+....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~-~ll~~~~---~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~- 73 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIA-YLLYEGG---VPPERILVLTFTNAAAQEMRERIRELLEEEQ- 73 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHH-HHHHTSS---STGGGEEEEESSHHHHHHHHHHHHHHHHHCC-
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHH-Hhhcccc---CChHHheecccCHHHHHHHHHHHHHhcCccc-
Confidence 46779898888 677899999999999997644443 4444321 2356799999999999999999988764321
Q ss_pred ceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCC--CCccEEEecchh
Q 010709 224 FKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSL--SRVSFVILDEAD 279 (503)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l--~~~~~vViDEaH 279 (503)
.. ................+.|+|...+...+.+..... -.-.+-++|+..
T Consensus 74 ~~------~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 74 QE------SSDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp HC------CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred cc------ccccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 00 000001111222335678999888765554322111 122456777776
No 203
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.45 E-value=0.0016 Score=54.81 Aligned_cols=17 Identities=35% Similarity=0.516 Sum_probs=15.0
Q ss_pred CCCeEEEccCCCchhHH
Q 010709 158 GRDLLGCAETGSGKTAA 174 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~ 174 (503)
++.+++.||+|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 56799999999999974
No 204
>PRK06526 transposase; Provisional
Probab=97.38 E-value=0.00076 Score=62.68 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=18.9
Q ss_pred HHHhcCCCeEEEccCCCchhHHh
Q 010709 153 PVALSGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 153 ~~i~~~~~vii~~~TGsGKTl~~ 175 (503)
.++..+.+++++||+|+|||..+
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa 115 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLA 115 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHH
Confidence 44556788999999999999754
No 205
>PRK08181 transposase; Validated
Probab=97.34 E-value=0.0035 Score=58.63 Aligned_cols=121 Identities=17% Similarity=0.173 Sum_probs=63.2
Q ss_pred cHHHHHHH----HHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhcc
Q 010709 145 TSIQAQAM----PVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (503)
Q Consensus 145 ~~~Q~~~i----~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~ 220 (503)
...|..++ .++..+++++++||+|+|||..+ ..+...+... +..++++. ..+|..++......
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa-~Aia~~a~~~-------g~~v~f~~-~~~L~~~l~~a~~~---- 155 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLA-AAIGLALIEN-------GWRVLFTR-TTDLVQKLQVARRE---- 155 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHH-HHHHHHHHHc-------CCceeeee-HHHHHHHHHHHHhC----
Confidence 34454444 23447788999999999999643 2233333332 34455543 34555443211000
Q ss_pred CCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCC-CHHHHHHHHHhCCC
Q 010709 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-FEPQIREVMQNLPD 299 (503)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~-~~~~~~~il~~~~~ 299 (503)
.+...+++. +.++++|||||.+...... ....+..++.....
T Consensus 156 ------------------------------~~~~~~l~~-------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~ 198 (269)
T PRK08181 156 ------------------------------LQLESAIAK-------LDKFDLLILDDLAYVTKDQAETSVLFELISARYE 198 (269)
T ss_pred ------------------------------CcHHHHHHH-------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHh
Confidence 011122222 3457899999998653332 22345566655433
Q ss_pred CCcEEEEEeeCCHHHH
Q 010709 300 KHQTLLFSATMPVEIE 315 (503)
Q Consensus 300 ~~q~i~~SAT~~~~~~ 315 (503)
...+|+.|-..+.+..
T Consensus 199 ~~s~IiTSN~~~~~w~ 214 (269)
T PRK08181 199 RRSILITANQPFGEWN 214 (269)
T ss_pred CCCEEEEcCCCHHHHH
Confidence 4456665655544433
No 206
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.33 E-value=0.00098 Score=59.40 Aligned_cols=54 Identities=22% Similarity=0.282 Sum_probs=34.1
Q ss_pred CCccEEEecchhHHhhC-CCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHh
Q 010709 268 SRVSFVILDEADRMLDM-GFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEY 321 (503)
Q Consensus 268 ~~~~~vViDEaH~l~~~-~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~ 321 (503)
+++++|+||-+-+.... .....+.+++....+..-++.++||...+....+..+
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~ 136 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAF 136 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHH
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHH
Confidence 45789999988643211 2345566777776666668889999976544444444
No 207
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.33 E-value=0.03 Score=66.60 Aligned_cols=237 Identities=13% Similarity=0.189 Sum_probs=123.6
Q ss_pred CCcHHHHHHHHHHhcCC--CeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhcc
Q 010709 143 RPTSIQAQAMPVALSGR--DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (503)
Q Consensus 143 ~~~~~Q~~~i~~i~~~~--~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~ 220 (503)
.+++-|.+++..++..+ -.+|.|+.|+|||.. +-.+..+... .|..+++++||-..+..+.+........
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~--l~~l~~~~~~------~G~~V~~lAPTgrAA~~L~e~~g~~A~T 500 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI--AQLLLHLASE------QGYEIQIITAGSLSAQELRQKIPRLAST 500 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH--HHHHHHHHHh------cCCeEEEEeCCHHHHHHHHHHhcchhhh
Confidence 57889999999998764 499999999999975 3333333332 3678999999987776665543211100
Q ss_pred CCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhC-CC
Q 010709 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PD 299 (503)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~-~~ 299 (503)
.......+.. ..-..|...++ .....+..-++||||||-.+. ...+..++... +.
T Consensus 501 --------------i~~~l~~l~~--~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~~~ 556 (1960)
T TIGR02760 501 --------------FITWVKNLFN--DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLS----NNELLKLIDKAEQH 556 (1960)
T ss_pred --------------HHHHHHhhcc--cccchhHHHhh----cccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHhhc
Confidence 0011111111 01122222332 223345677899999999553 44566777655 45
Q ss_pred CCcEEEEEeeC-------CHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCC
Q 010709 300 KHQTLLFSATM-------PVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCH 372 (503)
Q Consensus 300 ~~q~i~~SAT~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~ 372 (503)
..++|++.-+- ...+. .+... +-+. +...........+ .+.......+...+...+.... .
T Consensus 557 garvVlvGD~~QL~sV~aG~~f~-~L~~~-gv~t-~~l~~i~rq~~~v--~i~~~~~~~r~~~ia~~y~~L~-------~ 624 (1960)
T TIGR02760 557 NSKLILLNDSAQRQGMSAGSAID-LLKEG-GVTT-YAWVDTKQQKASV--EISEAVDKLRVDYIASAWLDLT-------P 624 (1960)
T ss_pred CCEEEEEcChhhcCccccchHHH-HHHHC-CCcE-EEeecccccCcce--eeeccCchHHHHHHHHHHHhcc-------c
Confidence 77888775542 12233 33332 1122 2222211111111 1122222233333333222211 1
Q ss_pred CCCcEEEEEcchhhHHHHHHHHHH----CC------CeEEEEcC-CCCHHHHHHHHHHHhcCC
Q 010709 373 PFPLTIVFVERKTRCDEVSEALVA----EG------LHAVALHG-GRNQSDRESALRDFRNGS 424 (503)
Q Consensus 373 ~~~~~lIF~~~~~~~~~l~~~L~~----~~------~~v~~lh~-~~~~~~r~~~~~~f~~g~ 424 (503)
...+++|+..+..+...|....+. .| +....+.. .++..++. ....|+.|.
T Consensus 625 ~r~~tliv~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r-~~~~Yr~Gd 686 (1960)
T TIGR02760 625 DRQNSQVLATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRR-NAAHYKQGM 686 (1960)
T ss_pred ccCceEEEcCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHh-hHhhcCCCC
Confidence 223489999998887777666653 22 22333332 56666666 336666654
No 208
>PRK14974 cell division protein FtsY; Provisional
Probab=97.30 E-value=0.0024 Score=61.68 Aligned_cols=55 Identities=15% Similarity=0.198 Sum_probs=40.2
Q ss_pred CCccEEEecchhHHhhC-CCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhc
Q 010709 268 SRVSFVILDEADRMLDM-GFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYL 322 (503)
Q Consensus 268 ~~~~~vViDEaH~l~~~-~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~ 322 (503)
.++++|+||.+.++-.. .....+..+.+...++..++.++||...+....++.|.
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~ 276 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFN 276 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHH
Confidence 35689999999976432 35566777777777777788999998776666666654
No 209
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.28 E-value=0.0011 Score=65.52 Aligned_cols=67 Identities=22% Similarity=0.275 Sum_probs=46.9
Q ss_pred CcHHHHHHHHHH------hcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHH--HHHHH
Q 010709 144 PTSIQAQAMPVA------LSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI--EKEVK 215 (503)
Q Consensus 144 ~~~~Q~~~i~~i------~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~--~~~~~ 215 (503)
+++-|+.++..+ .++..+.+.|+-|+|||.. +-.+...... .+..+++++||-..|..+ -..++
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l--~~~i~~~~~~------~~~~~~~~a~tg~AA~~i~~G~T~h 73 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFL--IKAIIDYLRS------RGKKVLVTAPTGIAAFNIPGGRTIH 73 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHH--HHHHHHHhcc------ccceEEEecchHHHHHhccCCcchH
Confidence 566789998887 5677899999999999974 4344433332 357799999998777655 24444
Q ss_pred HHh
Q 010709 216 ALS 218 (503)
Q Consensus 216 ~~~ 218 (503)
.++
T Consensus 74 s~f 76 (364)
T PF05970_consen 74 SFF 76 (364)
T ss_pred Hhc
Confidence 443
No 210
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.27 E-value=4.6e-05 Score=78.83 Aligned_cols=64 Identities=19% Similarity=0.263 Sum_probs=55.3
Q ss_pred CCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhc---CCCcEEEEccccccC
Q 010709 373 PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRN---GSTNILVATDVASRG 437 (503)
Q Consensus 373 ~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~---g~~~vLvaT~~~~~G 437 (503)
..++++||..-....+.+.+++...+ ....+.|.....+|+..++.|.. .....|++|.+.+.|
T Consensus 630 ~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 630 SGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred cchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 34569999999999999999999888 88889999999999999999983 346688999988765
No 211
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.23 E-value=0.0023 Score=62.46 Aligned_cols=128 Identities=20% Similarity=0.235 Sum_probs=62.8
Q ss_pred CCCeEEEccCCCchhHHhHHHHHHHHH-hcCCCCCCCCCeEEEEc-cc-HHHHHHHHHHHHHHhccCCCceEEEEECCcc
Q 010709 158 GRDLLGCAETGSGKTAAFTIPMIQHCV-AQTPVGRGDGPLALVLA-PT-RELAQQIEKEVKALSRSLDSFKTAIVVGGTN 234 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~~lp~l~~~~-~~~~~~~~~~~~~lil~-Pt-r~La~q~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (503)
++.++++||||+|||+.... +..... .++ ..++.+++ .+ |.-+. +.++.|+... ++.+.
T Consensus 137 g~ii~lvGptGvGKTTtiak-LA~~~~~~~G------~~~V~lit~D~~R~ga~---EqL~~~a~~~-gv~~~------- 198 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAK-LAARCVMRFG------ASKVALLTTDSYRIGGH---EQLRIFGKIL-GVPVH------- 198 (374)
T ss_pred CcEEEEECCCCCCHHHHHHH-HHHHHHHhcC------CCeEEEEecccccccHH---HHHHHHHHHc-CCceE-------
Confidence 56799999999999986532 222222 211 12344443 22 22222 3344444322 12222
Q ss_pred HHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCC-CHHHHHHHHHhCCCCCcEEEEEeeCCHH
Q 010709 235 IAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-FEPQIREVMQNLPDKHQTLLFSATMPVE 313 (503)
Q Consensus 235 ~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~-~~~~~~~il~~~~~~~q~i~~SAT~~~~ 313 (503)
.+.+++.+...+.+ +.+.++|+||.+-+.-... ....+..+.....+...++.+|||...+
T Consensus 199 --------------~~~~~~~l~~~l~~----l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~ 260 (374)
T PRK14722 199 --------------AVKDGGDLQLALAE----LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGD 260 (374)
T ss_pred --------------ecCCcccHHHHHHH----hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChH
Confidence 23344444443332 4567899999996432111 1122222222223334578889998544
Q ss_pred -HHHHHHHh
Q 010709 314 -IEALAQEY 321 (503)
Q Consensus 314 -~~~~~~~~ 321 (503)
+...++.|
T Consensus 261 ~l~evi~~f 269 (374)
T PRK14722 261 TLNEVVQAY 269 (374)
T ss_pred HHHHHHHHH
Confidence 44455555
No 212
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.18 E-value=0.0052 Score=59.80 Aligned_cols=129 Identities=18% Similarity=0.252 Sum_probs=68.8
Q ss_pred CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc--ccH-HHHHHHHHHHHHHhccCCCceEEEEECCccH
Q 010709 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA--PTR-ELAQQIEKEVKALSRSLDSFKTAIVVGGTNI 235 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~--Ptr-~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (503)
+.+.++||||+|||+.... +...+... +.++.++. |.| ..+.|+. .++... ++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaK-LA~~L~~~-------GkkVglI~aDt~RiaAvEQLk----~yae~l-gipv--------- 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAK-MAWQFHGK-------KKTVGFITTDHSRIGTVQQLQ----DYVKTI-GFEV--------- 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHH-HHHHHHHc-------CCcEEEEecCCcchHHHHHHH----HHhhhc-CCcE---------
Confidence 4588999999999986433 22222222 34455444 444 3333433 333211 1211
Q ss_pred HHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhC-CCHHHHHHHHHhCCCCCcEEEEEeeCC-HH
Q 010709 236 AEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM-GFEPQIREVMQNLPDKHQTLLFSATMP-VE 313 (503)
Q Consensus 236 ~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~-~~~~~~~~il~~~~~~~q~i~~SAT~~-~~ 313 (503)
+...+|..+.+.+..-. ...++++|+||-+=+.... .....+.+++....+..-++.+|||.. .+
T Consensus 300 ------------~v~~d~~~L~~aL~~lk-~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d 366 (436)
T PRK11889 300 ------------IAVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKD 366 (436)
T ss_pred ------------EecCCHHHHHHHHHHHH-hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHH
Confidence 12335666655554311 1125789999988664322 123445555555555544677898764 45
Q ss_pred HHHHHHHhc
Q 010709 314 IEALAQEYL 322 (503)
Q Consensus 314 ~~~~~~~~~ 322 (503)
+...++.|-
T Consensus 367 ~~~i~~~F~ 375 (436)
T PRK11889 367 MIEIITNFK 375 (436)
T ss_pred HHHHHHHhc
Confidence 566776664
No 213
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.17 E-value=0.0059 Score=61.27 Aligned_cols=128 Identities=17% Similarity=0.239 Sum_probs=65.9
Q ss_pred CCCeEEEccCCCchhHHhHHHHHHHHH-hcCCCCCCCCCeEEEEc--ccHHHHHHHHHHHHHHhccCCCceEEEEECCcc
Q 010709 158 GRDLLGCAETGSGKTAAFTIPMIQHCV-AQTPVGRGDGPLALVLA--PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTN 234 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~~lp~l~~~~-~~~~~~~~~~~~~lil~--Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (503)
++.++++||||+|||+...- +...+. .. .+.++.++. |.|.-+. +.++.++... ++.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~k-LA~~~~~~~------~g~~V~li~~D~~r~~a~---eqL~~~a~~~-~vp~-------- 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAK-LAARYALLY------GKKKVALITLDTYRIGAV---EQLKTYAKIM-GIPV-------- 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHH-HHHHHHHhc------CCCeEEEEECCccHHHHH---HHHHHHHHHh-CCce--------
Confidence 45689999999999986532 222222 11 134455544 4443332 3333333221 1221
Q ss_pred HHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhC-CCHHHHHHHHHh-CCCCCcEEEEEeeCCH
Q 010709 235 IAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM-GFEPQIREVMQN-LPDKHQTLLFSATMPV 312 (503)
Q Consensus 235 ~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~-~~~~~~~~il~~-~~~~~q~i~~SAT~~~ 312 (503)
..+.++..+...+.. +.++++|+||.+-+.... .....+..++.. ..+....++++||...
T Consensus 282 -------------~~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~ 344 (424)
T PRK05703 282 -------------EVVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY 344 (424)
T ss_pred -------------EccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH
Confidence 112344445454443 346899999988542211 123345555552 2233447888998864
Q ss_pred -HHHHHHHHh
Q 010709 313 -EIEALAQEY 321 (503)
Q Consensus 313 -~~~~~~~~~ 321 (503)
.+...+..|
T Consensus 345 ~~l~~~~~~f 354 (424)
T PRK05703 345 EDLKDIYKHF 354 (424)
T ss_pred HHHHHHHHHh
Confidence 555555555
No 214
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.07 E-value=0.0011 Score=55.30 Aligned_cols=41 Identities=22% Similarity=0.249 Sum_probs=24.9
Q ss_pred CCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHH
Q 010709 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~L 206 (503)
+..+++.||+|+|||+... .+....... +..++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~--~l~~~~~~~------~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLAR--ALARELGPP------GGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHH--HHHhccCCC------CCCEEEECCEEcc
Confidence 4569999999999998532 232222211 1246777766543
No 215
>PRK05642 DNA replication initiation factor; Validated
Probab=97.03 E-value=0.0017 Score=59.81 Aligned_cols=44 Identities=23% Similarity=0.371 Sum_probs=28.0
Q ss_pred CccEEEecchhHHhhC-CCHHHHHHHHHhCCCCCcEEEEEeeCCH
Q 010709 269 RVSFVILDEADRMLDM-GFEPQIREVMQNLPDKHQTLLFSATMPV 312 (503)
Q Consensus 269 ~~~~vViDEaH~l~~~-~~~~~~~~il~~~~~~~q~i~~SAT~~~ 312 (503)
+++++|||++|.+.+. .+...+..++..+....+.++++++.++
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 5678999999976543 3345566777665543345666666533
No 216
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.01 E-value=0.0019 Score=59.20 Aligned_cols=86 Identities=27% Similarity=0.376 Sum_probs=65.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCc-cHHHHHHHhh-CCCcEEEECcHHHHHHHHcCCCCCCCc
Q 010709 193 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGT-NIAEQRSELR-GGVSIVVATPGRFLDHLQQGNTSLSRV 270 (503)
Q Consensus 193 ~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~l~~~ 270 (503)
..|.+|||+..-.-|..+.+.++.+.. .+..+.-++... ...++...+. ..++|.||||+|+..++..+.+.++++
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~--k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l 202 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKG--KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNL 202 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhcc--CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccC
Confidence 358899999887667777777777631 123444455554 5566666665 478999999999999999999999999
Q ss_pred cEEEecchhH
Q 010709 271 SFVILDEADR 280 (503)
Q Consensus 271 ~~vViDEaH~ 280 (503)
.+||||--|.
T Consensus 203 ~~ivlD~s~~ 212 (252)
T PF14617_consen 203 KRIVLDWSYL 212 (252)
T ss_pred eEEEEcCCcc
Confidence 9999998773
No 217
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.95 E-value=0.0054 Score=66.43 Aligned_cols=71 Identities=21% Similarity=0.209 Sum_probs=54.6
Q ss_pred CCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q 010709 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (503)
Q Consensus 142 ~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 218 (503)
..+++-|.+++.. ....++|.|..|||||.+. ..-+.+++.... -...++|+++-|+..|..+.+++.++.
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L-~~Ria~Li~~~~---v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVL-THRIAWLLSVEN---ASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHH-HHHHHHHHHcCC---CCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 3578899998865 3567999999999999875 444555555321 234679999999999999999998875
No 218
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.91 E-value=0.0027 Score=58.60 Aligned_cols=44 Identities=16% Similarity=0.277 Sum_probs=24.8
Q ss_pred ccEEEecchhHHhhC-CCHHHHHHHHHhCCC--CCcEEEEEeeCCHH
Q 010709 270 VSFVILDEADRMLDM-GFEPQIREVMQNLPD--KHQTLLFSATMPVE 313 (503)
Q Consensus 270 ~~~vViDEaH~l~~~-~~~~~~~~il~~~~~--~~q~i~~SAT~~~~ 313 (503)
+++|+|||+|.+... .....+..++..+.. ..++++.|..+|..
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~ 144 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQ 144 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHH
Confidence 478999999987543 234445555544322 33555544444444
No 219
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.91 E-value=0.0055 Score=66.32 Aligned_cols=70 Identities=19% Similarity=0.196 Sum_probs=53.8
Q ss_pred CCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q 010709 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (503)
Q Consensus 143 ~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 218 (503)
.+++-|.+++.. ....++|.|..|||||.+. +.-+.+++.... -...++|+|+-|+..|..+.+++.++.
T Consensus 9 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl-~~Ria~Li~~~~---v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 9 SLNDKQREAVAA--PLGNMLVLAGAGSGKTRVL-VHRIAWLMQVEN---ASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred hcCHHHHHHHhC--CCCCEEEEecCCCCHHHHH-HHHHHHHHHcCC---CChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 588899999875 3467999999999999875 444555554321 234679999999999999999998875
No 220
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.90 E-value=0.0058 Score=51.20 Aligned_cols=67 Identities=22% Similarity=0.336 Sum_probs=47.6
Q ss_pred HHHHHHHHHHCCC------eEEEEcCCCCHHHHHHHHHHHhcCC-CcEEEEccccccCCCCCC--CCEEEEccCCC
Q 010709 387 CDEVSEALVAEGL------HAVALHGGRNQSDRESALRDFRNGS-TNILVATDVASRGLDVMG--VAHVVNLDLPK 453 (503)
Q Consensus 387 ~~~l~~~L~~~~~------~v~~lh~~~~~~~r~~~~~~f~~g~-~~vLvaT~~~~~Gldip~--v~~VI~~~~p~ 453 (503)
.+.++..+...+. .-..+.-+....+...+++.|++.. ..||+++.-+++|+|+|+ ++.||..++|-
T Consensus 4 m~~v~~~~~~~~~~~~l~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 4 MESFVQYWKENGILENINKNLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred HHHHHHHHHHcCchhhHhcCCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 3455555555443 2233444555666788999998754 379999988999999997 67899999874
No 221
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.90 E-value=0.0057 Score=60.35 Aligned_cols=81 Identities=17% Similarity=0.257 Sum_probs=51.3
Q ss_pred CcEEEEEcchhhHHHHHHHHHHCCC--eE----EEEcCCCCHHHHHHHHHHHh----cCCCcEEE--EccccccCCCCCC
Q 010709 375 PLTIVFVERKTRCDEVSEALVAEGL--HA----VALHGGRNQSDRESALRDFR----NGSTNILV--ATDVASRGLDVMG 442 (503)
Q Consensus 375 ~~~lIF~~~~~~~~~l~~~L~~~~~--~v----~~lh~~~~~~~r~~~~~~f~----~g~~~vLv--aT~~~~~Gldip~ 442 (503)
+.++.|+++.-..+.++......|+ ++ ..+-+.-...+-.-.+..++ .|.-.||+ |-.-.++|+|+.+
T Consensus 531 dG~v~ff~sylYmesiv~~w~~~gil~ei~k~KL~fIetpD~~ETs~al~ny~~aC~~gRGavl~sVargkVsEgidF~h 610 (755)
T KOG1131|consen 531 DGIVCFFPSYLYMESIVSRWYEQGILDEIMKYKLLFIETPDFRETSLALANYRYACDNGRGAVLLSVARGKVSEGIDFDH 610 (755)
T ss_pred CceEEEEehHHHHHHHHHHHHHHhHHHHHhhCceEEEeCCchhhhHHHHHHHHHHhcCCCCceEEEEecCccccCccccc
Confidence 4578888887777777776666553 11 22333333333344455443 45556665 4477889999987
Q ss_pred CC--EEEEccCCCCh
Q 010709 443 VA--HVVNLDLPKVL 455 (503)
Q Consensus 443 v~--~VI~~~~p~s~ 455 (503)
-. .||+++.|...
T Consensus 611 hyGR~ViM~gIP~qy 625 (755)
T KOG1131|consen 611 HYGREVIMEGIPYQY 625 (755)
T ss_pred ccCceEEEEeccchh
Confidence 54 89999999643
No 222
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.87 E-value=0.02 Score=53.04 Aligned_cols=53 Identities=25% Similarity=0.295 Sum_probs=36.5
Q ss_pred CCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhc
Q 010709 115 PAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQ 186 (503)
Q Consensus 115 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~ 186 (503)
..|..+.+|+++++++-+.+.+.. ...=++|.||||||||+. +..++.++...
T Consensus 100 ~Ip~~i~~~e~LglP~i~~~~~~~------------------~~GLILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 100 LIPSKIPTLEELGLPPIVRELAES------------------PRGLILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred ccCccCCCHHHcCCCHHHHHHHhC------------------CCceEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 556777778888777665542210 222399999999999987 47788876654
No 223
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.85 E-value=0.0039 Score=67.72 Aligned_cols=154 Identities=18% Similarity=0.113 Sum_probs=92.1
Q ss_pred cCCCeEEEccCCCchhHHhHHHHHHHHHhcC----------CCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceE
Q 010709 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQT----------PVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKT 226 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~----------~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~ 226 (503)
.|+++++.-..|.|||.+-+.-.+...-... ......-+..|||+|. ++..||.+++....... +++
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~--lKv 449 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL--LKV 449 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc--ceE
Confidence 3567899999999999876544433211100 0011123568999998 67788999998876542 577
Q ss_pred EEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCC--C----------------C--CCccEEEecchhHHhhCCC
Q 010709 227 AIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT--S----------------L--SRVSFVILDEADRMLDMGF 286 (503)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~--~----------------l--~~~~~vViDEaH~l~~~~~ 286 (503)
..+.|-....-.....--.+|||++|+..|...+..... . | -.+=-|++|||+.+ .. -
T Consensus 450 ~~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMv-es-s 527 (1394)
T KOG0298|consen 450 LLYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMV-ES-S 527 (1394)
T ss_pred EEEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhh-cc-h
Confidence 777764322111111123589999999999777754311 0 0 01124899999954 33 2
Q ss_pred HHHHHHHHHhCCCCCcEEEEEeeCCHHHHH
Q 010709 287 EPQIREVMQNLPDKHQTLLFSATMPVEIEA 316 (503)
Q Consensus 287 ~~~~~~il~~~~~~~q~i~~SAT~~~~~~~ 316 (503)
.....+.+.+++.. -.=++|+||-..+.+
T Consensus 528 sS~~a~M~~rL~~i-n~W~VTGTPiq~Idd 556 (1394)
T KOG0298|consen 528 SSAAAEMVRRLHAI-NRWCVTGTPIQKIDD 556 (1394)
T ss_pred HHHHHHHHHHhhhh-ceeeecCCchhhhhh
Confidence 44455555555432 357889997444433
No 224
>PRK06893 DNA replication initiation factor; Validated
Probab=96.85 E-value=0.0032 Score=57.87 Aligned_cols=45 Identities=20% Similarity=0.327 Sum_probs=28.1
Q ss_pred CCccEEEecchhHHhhC-CCHHHHHHHHHhCCC-CCcEEEEEeeCCH
Q 010709 268 SRVSFVILDEADRMLDM-GFEPQIREVMQNLPD-KHQTLLFSATMPV 312 (503)
Q Consensus 268 ~~~~~vViDEaH~l~~~-~~~~~~~~il~~~~~-~~q~i~~SAT~~~ 312 (503)
.+.++|||||+|.+.+. .+...+..++..... ..+++++|++.++
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p 136 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSP 136 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCCh
Confidence 46789999999987543 233445555555433 3456677777543
No 225
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.75 E-value=0.015 Score=61.96 Aligned_cols=72 Identities=24% Similarity=0.274 Sum_probs=54.0
Q ss_pred CCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q 010709 141 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (503)
Q Consensus 141 ~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 218 (503)
-..+++-|++++.. ...+++|.|..|||||.+. +.-+.+++... ...+..+|+++.++..|..+.+++....
T Consensus 194 ~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl-~~r~ayLl~~~---~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 194 SSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVL-VARAGWLLARG---QAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHH-HHHHHHHHHhC---CCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 35689999998864 3356899999999999875 44555555432 1234679999999999999999887755
No 226
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.75 E-value=0.0066 Score=55.69 Aligned_cols=19 Identities=37% Similarity=0.440 Sum_probs=15.7
Q ss_pred cCCCeEEEccCCCchhHHh
Q 010709 157 SGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~ 175 (503)
.+..+++.||+|+|||..+
T Consensus 37 ~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3457999999999999754
No 227
>PF13173 AAA_14: AAA domain
Probab=96.68 E-value=0.021 Score=47.10 Aligned_cols=38 Identities=16% Similarity=0.345 Sum_probs=25.6
Q ss_pred CccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEee
Q 010709 269 RVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 309 (503)
Q Consensus 269 ~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 309 (503)
+-.+|+|||+|++-+ +...+..+.... ++.++++.+..
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEEEccc
Confidence 567899999998753 466666776654 45666654443
No 228
>PRK06921 hypothetical protein; Provisional
Probab=96.66 E-value=0.037 Score=51.97 Aligned_cols=43 Identities=19% Similarity=0.138 Sum_probs=25.5
Q ss_pred CCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHH
Q 010709 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQ 208 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~ 208 (503)
++++++.|++|+|||..+ ..+...+... .+..++++.. .++..
T Consensus 117 ~~~l~l~G~~G~GKThLa-~aia~~l~~~------~g~~v~y~~~-~~l~~ 159 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLL-TAAANELMRK------KGVPVLYFPF-VEGFG 159 (266)
T ss_pred CCeEEEECCCCCcHHHHH-HHHHHHHhhh------cCceEEEEEH-HHHHH
Confidence 567999999999999643 3334443332 1345666553 34433
No 229
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=96.66 E-value=0.0071 Score=50.75 Aligned_cols=67 Identities=19% Similarity=0.354 Sum_probs=44.7
Q ss_pred HHHHHHHHHHCCC---eEEEEcCCCCHHHHHHHHHHHhcCCC---cEEEEccc--cccCCCCCC--CCEEEEccCCC
Q 010709 387 CDEVSEALVAEGL---HAVALHGGRNQSDRESALRDFRNGST---NILVATDV--ASRGLDVMG--VAHVVNLDLPK 453 (503)
Q Consensus 387 ~~~l~~~L~~~~~---~v~~lh~~~~~~~r~~~~~~f~~g~~---~vLvaT~~--~~~Gldip~--v~~VI~~~~p~ 453 (503)
.+.+++.+...+. ....+.-+....+...+++.|++... .||+++.- +++|||+|+ ++.||..++|-
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 4556666665443 12223333333355788888987543 68988876 999999997 68999999873
No 230
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.62 E-value=0.034 Score=59.41 Aligned_cols=22 Identities=36% Similarity=0.400 Sum_probs=15.9
Q ss_pred eEEEccCCCchhHHhHHHHHHHH
Q 010709 161 LLGCAETGSGKTAAFTIPMIQHC 183 (503)
Q Consensus 161 vii~~~TGsGKTl~~~lp~l~~~ 183 (503)
+.|.|+||+|||++. -.++..+
T Consensus 784 LYIyG~PGTGKTATV-K~VLrEL 805 (1164)
T PTZ00112 784 LYISGMPGTGKTATV-YSVIQLL 805 (1164)
T ss_pred EEEECCCCCCHHHHH-HHHHHHH
Confidence 359999999999875 3344443
No 231
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.61 E-value=0.015 Score=66.55 Aligned_cols=65 Identities=23% Similarity=0.237 Sum_probs=45.2
Q ss_pred CCcHHHHHHHHHHhcC--CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHH
Q 010709 143 RPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIE 211 (503)
Q Consensus 143 ~~~~~Q~~~i~~i~~~--~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~ 211 (503)
.+++-|.+++..++.+ +-++|.|..|+|||+.. -.++..+... ....+..++.++||-..+..+.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l-~~i~~~~~~l---~e~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQF-RAVMSAVNML---PESERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHH-HHHHHHHHHH---hhccCceEEEEechHHHHHHHH
Confidence 6899999999999965 55999999999999853 2222222111 0113567888999987766553
No 232
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.61 E-value=0.031 Score=47.96 Aligned_cols=36 Identities=22% Similarity=0.231 Sum_probs=22.2
Q ss_pred eEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccH
Q 010709 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR 204 (503)
Q Consensus 161 vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr 204 (503)
+++.|++|+|||..... +...... .+..++++....
T Consensus 2 ~~i~G~~G~GKT~l~~~-i~~~~~~-------~~~~v~~~~~e~ 37 (165)
T cd01120 2 ILVFGPTGSGKTTLALQ-LALNIAT-------KGGKVVYVDIEE 37 (165)
T ss_pred eeEeCCCCCCHHHHHHH-HHHHHHh-------cCCEEEEEECCc
Confidence 68999999999985422 2222222 245677766543
No 233
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.61 E-value=0.046 Score=55.55 Aligned_cols=129 Identities=16% Similarity=0.221 Sum_probs=61.8
Q ss_pred cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc--ccHHHHHHHHHHHHHHhccCCCceEEEEECCcc
Q 010709 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA--PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTN 234 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~--Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (503)
.|+.+.++||||+|||+....-+. .+... ..+.++.++. +.|..+. +.++.++... ++.+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa-~la~~-----~~gkkVaLIdtDtyRigA~---EQLk~ya~iL-gv~v~~------ 412 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ-RFAAQ-----HAPRDVALVTTDTQRVGGR---EQLHSYGRQL-GIAVHE------ 412 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH-HHHHh-----cCCCceEEEecccccccHH---HHHHHhhccc-CceeEe------
Confidence 456788999999999985432222 22221 1123344443 3343332 2233333221 121110
Q ss_pred HHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhC-CCHHHHHHHHHhCCCCCcEEEEEeeCC-H
Q 010709 235 IAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM-GFEPQIREVMQNLPDKHQTLLFSATMP-V 312 (503)
Q Consensus 235 ~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~-~~~~~~~~il~~~~~~~q~i~~SAT~~-~ 312 (503)
+.+++.+...+.+ +.++++|+||.+-+.... .....+..+... .....+++++++.. .
T Consensus 413 ---------------a~d~~~L~~aL~~----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa-~~~a~lLVLpAtss~~ 472 (559)
T PRK12727 413 ---------------ADSAESLLDLLER----LRDYKLVLIDTAGMGQRDRALAAQLNWLRAA-RQVTSLLVLPANAHFS 472 (559)
T ss_pred ---------------cCcHHHHHHHHHH----hccCCEEEecCCCcchhhHHHHHHHHHHHHh-hcCCcEEEEECCCChh
Confidence 1133444444443 346889999999743211 111122222222 23345778888874 3
Q ss_pred HHHHHHHHh
Q 010709 313 EIEALAQEY 321 (503)
Q Consensus 313 ~~~~~~~~~ 321 (503)
++...++.|
T Consensus 473 Dl~eii~~f 481 (559)
T PRK12727 473 DLDEVVRRF 481 (559)
T ss_pred HHHHHHHHH
Confidence 555555554
No 234
>PRK08727 hypothetical protein; Validated
Probab=96.60 E-value=0.004 Score=57.32 Aligned_cols=47 Identities=17% Similarity=0.130 Sum_probs=26.4
Q ss_pred CCccEEEecchhHHhhCC-CHHHHHHHHHhCCC-CCcEEEEEeeCCHHH
Q 010709 268 SRVSFVILDEADRMLDMG-FEPQIREVMQNLPD-KHQTLLFSATMPVEI 314 (503)
Q Consensus 268 ~~~~~vViDEaH~l~~~~-~~~~~~~il~~~~~-~~q~i~~SAT~~~~~ 314 (503)
.++++|||||+|.+.... ....+..++..... ..++|+.|-..|..+
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 345799999999775432 22334445444322 344555555555554
No 235
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.58 E-value=0.031 Score=52.35 Aligned_cols=130 Identities=18% Similarity=0.225 Sum_probs=69.2
Q ss_pred CCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc--ccH-HHHHHHHHHHHHHhccCCCceEEEEECCcc
Q 010709 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA--PTR-ELAQQIEKEVKALSRSLDSFKTAIVVGGTN 234 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~--Ptr-~La~q~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (503)
+..+.++|++|+|||+.+.. +...... .+.++.++. +.| ..+.|+......+ ++.+.
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~--l~~~l~~------~~~~v~~i~~D~~ri~~~~ql~~~~~~~-----~~~~~------- 134 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAK--MAWQFHG------KKKTVGFITTDHSRIGTVQQLQDYVKTI-----GFEVI------- 134 (270)
T ss_pred CCEEEEECCCCCcHHHHHHH--HHHHHHH------cCCeEEEEecCCCCHHHHHHHHHHhhhc-----CceEE-------
Confidence 35699999999999985543 2222221 134444444 333 4555554333221 12211
Q ss_pred HHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhC-CCHHHHHHHHHhCCCCCcEEEEEeeCC-H
Q 010709 235 IAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM-GFEPQIREVMQNLPDKHQTLLFSATMP-V 312 (503)
Q Consensus 235 ~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~-~~~~~~~~il~~~~~~~q~i~~SAT~~-~ 312 (503)
...++..+.+.+..- ....++++||||-+=+.-.. .....+..++....+..-++.+|||.. .
T Consensus 135 --------------~~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~ 199 (270)
T PRK06731 135 --------------AVRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK 199 (270)
T ss_pred --------------ecCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH
Confidence 112444444433320 11246789999998654221 123445555555555555777999864 4
Q ss_pred HHHHHHHHhc
Q 010709 313 EIEALAQEYL 322 (503)
Q Consensus 313 ~~~~~~~~~~ 322 (503)
+....++.|-
T Consensus 200 d~~~~~~~f~ 209 (270)
T PRK06731 200 DMIEIITNFK 209 (270)
T ss_pred HHHHHHHHhC
Confidence 6667777763
No 236
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.58 E-value=0.027 Score=51.95 Aligned_cols=48 Identities=21% Similarity=0.344 Sum_probs=26.4
Q ss_pred CCCccEEEecchhHHhhCCCHH-HHHHHHHhC-CCCCcEEEEEeeCCHHH
Q 010709 267 LSRVSFVILDEADRMLDMGFEP-QIREVMQNL-PDKHQTLLFSATMPVEI 314 (503)
Q Consensus 267 l~~~~~vViDEaH~l~~~~~~~-~~~~il~~~-~~~~q~i~~SAT~~~~~ 314 (503)
+.++++|||||++......+.. .+..++... .....+++.|---+.++
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l 209 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEM 209 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHH
Confidence 3468899999999654333333 344555543 22344555554433333
No 237
>PHA02533 17 large terminase protein; Provisional
Probab=96.57 E-value=0.019 Score=59.31 Aligned_cols=149 Identities=15% Similarity=0.132 Sum_probs=84.9
Q ss_pred CCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCC
Q 010709 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (503)
Q Consensus 143 ~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~ 222 (503)
.|.|+|...+..+..++-.++..+=..|||.+....++...... .+..+++++|++.-|..+.+.++......+
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~------~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P 132 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN------KDKNVGILAHKASMAAEVLDRTKQAIELLP 132 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC------CCCEEEEEeCCHHHHHHHHHHHHHHHHhCH
Confidence 57899999998876566677888889999987654444443332 246899999999999988888886655432
Q ss_pred Cc-eEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhCCC--
Q 010709 223 SF-KTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPD-- 299 (503)
Q Consensus 223 ~~-~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~-- 299 (503)
.+ ...+..... ....+.++..|.+.|.+. ....-....++|+||+|.+-+ +...+..+...+..
T Consensus 133 ~l~~~~i~~~~~----~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg~ 199 (534)
T PHA02533 133 DFLQPGIVEWNK----GSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSGR 199 (534)
T ss_pred HHhhcceeecCc----cEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcCC
Confidence 21 111111000 001123455665554221 111223467899999996532 23333333333322
Q ss_pred CCcEEEEEeeC
Q 010709 300 KHQTLLFSATM 310 (503)
Q Consensus 300 ~~q~i~~SAT~ 310 (503)
..+++.+|++.
T Consensus 200 ~~r~iiiSTp~ 210 (534)
T PHA02533 200 SSKIIITSTPN 210 (534)
T ss_pred CceEEEEECCC
Confidence 23455555443
No 238
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.56 E-value=0.03 Score=49.51 Aligned_cols=49 Identities=20% Similarity=0.233 Sum_probs=30.8
Q ss_pred eEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q 010709 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (503)
Q Consensus 161 vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 218 (503)
++|.|++|+|||+..+-.+. ..... +.+++|+... +-..++.+.+..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~-~~~~~-------g~~v~~~s~e-~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLY-AGLAR-------GEPGLYVTLE-ESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHH-HHHHC-------CCcEEEEECC-CCHHHHHHHHHHcC
Confidence 68999999999985433222 22222 5667877643 45566666666553
No 239
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.56 E-value=0.018 Score=55.72 Aligned_cols=42 Identities=14% Similarity=0.008 Sum_probs=30.6
Q ss_pred CcHHHHHHHHHHhcCC----CeEEEccCCCchhHHhHHHHHHHHHhc
Q 010709 144 PTSIQAQAMPVALSGR----DLLGCAETGSGKTAAFTIPMIQHCVAQ 186 (503)
Q Consensus 144 ~~~~Q~~~i~~i~~~~----~vii~~~TGsGKTl~~~lp~l~~~~~~ 186 (503)
.+|||...|..+...+ -.+++||.|.|||..+ ..+...+.+.
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A-~~~A~~llC~ 49 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALA-ERLAAALLCE 49 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHH-HHHHHHHcCC
Confidence 4788999998887543 3889999999999865 3344455543
No 240
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.55 E-value=0.02 Score=66.50 Aligned_cols=66 Identities=21% Similarity=0.204 Sum_probs=46.0
Q ss_pred CCCcHHHHHHHHHHhcCC--CeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHH
Q 010709 142 TRPTSIQAQAMPVALSGR--DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIE 211 (503)
Q Consensus 142 ~~~~~~Q~~~i~~i~~~~--~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~ 211 (503)
..+++.|.+++..++.+. -++|.|..|+|||+.. -.++..+... ....+..++.++||--.|..+.
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l---~~~~~~~V~glAPTgrAAk~L~ 1033 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTL---PESERPRVVGLGPTHRAVGEMR 1033 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHh---hcccCceEEEECCcHHHHHHHH
Confidence 368999999999999764 4999999999999853 3333332211 0112466888999987766543
No 241
>PRK08116 hypothetical protein; Validated
Probab=96.53 E-value=0.048 Score=51.30 Aligned_cols=48 Identities=13% Similarity=0.184 Sum_probs=26.6
Q ss_pred CCccEEEecchhHHhhCC-CHHHHHHHHHhC-CCCCcEEEEEeeCCHHHH
Q 010709 268 SRVSFVILDEADRMLDMG-FEPQIREVMQNL-PDKHQTLLFSATMPVEIE 315 (503)
Q Consensus 268 ~~~~~vViDEaH~l~~~~-~~~~~~~il~~~-~~~~q~i~~SAT~~~~~~ 315 (503)
.+.++|||||++...... ....+..++... .....+|+.|-..+.++.
T Consensus 177 ~~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~ 226 (268)
T PRK08116 177 VNADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLEELK 226 (268)
T ss_pred cCCCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHH
Confidence 457899999996321111 233455555543 334556666665555544
No 242
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.50 E-value=0.014 Score=54.15 Aligned_cols=45 Identities=20% Similarity=0.356 Sum_probs=33.4
Q ss_pred CCCCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeC
Q 010709 265 TSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (503)
Q Consensus 265 ~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~ 310 (503)
.....++.+|+||||.|... -...+++.+.......++++...-+
T Consensus 125 ~~~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSD-AQAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred CCCCcceEEEEechhhhhHH-HHHHHHHHHhccccceEEEEEcCCh
Confidence 34567899999999987543 3556778888877777788777665
No 243
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.49 E-value=0.034 Score=53.45 Aligned_cols=144 Identities=19% Similarity=0.217 Sum_probs=74.0
Q ss_pred CCCcHHHHHHHHHHh----cCC---CeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHH
Q 010709 142 TRPTSIQAQAMPVAL----SGR---DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 214 (503)
Q Consensus 142 ~~~~~~Q~~~i~~i~----~~~---~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~ 214 (503)
..++|||..++..+. .|+ -.++.||.|.||+..+ ..+...+++..... .+ -++. .+.+
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA-~~lA~~LlC~~~~~---~~----~c~~-------c~~~ 67 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVA-LALAEHVLASGPDP---AA----AQRT-------RQLI 67 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH-HHHHHHHhCCCCCC---CC----cchH-------HHHH
Confidence 467899999998765 333 3899999999999865 44555555542110 00 0111 1111
Q ss_pred HHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHH
Q 010709 215 KALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVM 294 (503)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il 294 (503)
.. ..++++.+.....+.... .....|.|--.-.+.+.+.. .-.....+++|||+||.|... -.+.+.+++
T Consensus 68 ~~--g~HPD~~~i~~~p~~~~~------k~~~~I~idqIR~l~~~~~~-~p~~g~~kV~iI~~ae~m~~~-AaNaLLKtL 137 (319)
T PRK08769 68 AA--GTHPDLQLVSFIPNRTGD------KLRTEIVIEQVREISQKLAL-TPQYGIAQVVIVDPADAINRA-ACNALLKTL 137 (319)
T ss_pred hc--CCCCCEEEEecCCCcccc------cccccccHHHHHHHHHHHhh-CcccCCcEEEEeccHhhhCHH-HHHHHHHHh
Confidence 11 122344333211110000 00011222111122222222 123457899999999988533 456677777
Q ss_pred HhCCCCCcEEEEEeeC
Q 010709 295 QNLPDKHQTLLFSATM 310 (503)
Q Consensus 295 ~~~~~~~q~i~~SAT~ 310 (503)
..-+++..+|++|..+
T Consensus 138 EEPp~~~~fiL~~~~~ 153 (319)
T PRK08769 138 EEPSPGRYLWLISAQP 153 (319)
T ss_pred hCCCCCCeEEEEECCh
Confidence 7767777666666544
No 244
>PRK12377 putative replication protein; Provisional
Probab=96.48 E-value=0.026 Score=52.22 Aligned_cols=45 Identities=13% Similarity=0.265 Sum_probs=26.9
Q ss_pred CCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHH
Q 010709 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIE 211 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~ 211 (503)
..++++.|++|+|||..+ .++...+... +..+++ ++..+|..++.
T Consensus 101 ~~~l~l~G~~GtGKThLa-~AIa~~l~~~-------g~~v~~-i~~~~l~~~l~ 145 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLA-AAIGNRLLAK-------GRSVIV-VTVPDVMSRLH 145 (248)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHHHc-------CCCeEE-EEHHHHHHHHH
Confidence 357999999999999743 3344444432 344444 34445655443
No 245
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.40 E-value=0.012 Score=54.69 Aligned_cols=49 Identities=18% Similarity=0.295 Sum_probs=31.8
Q ss_pred cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHH
Q 010709 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 214 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~ 214 (503)
.++++++.|++|+|||..+ .++-..+... |.. ++.+++.+++.++...+
T Consensus 104 ~~~nl~l~G~~G~GKThLa-~Ai~~~l~~~-------g~s-v~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLA-IAIGNELLKA-------GIS-VLFITAPDLLSKLKAAF 152 (254)
T ss_pred cCCcEEEECCCCCcHHHHH-HHHHHHHHHc-------CCe-EEEEEHHHHHHHHHHHH
Confidence 6778999999999999754 3344444432 333 55556667776655544
No 246
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.34 E-value=0.043 Score=57.88 Aligned_cols=156 Identities=21% Similarity=0.268 Sum_probs=88.7
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCC--CeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHH
Q 010709 128 LHPSIMKDIEFHEYTRPTSIQAQAMPVALSGR--DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE 205 (503)
Q Consensus 128 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~--~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~ 205 (503)
.++..-..+.....+.+..-|.+.+..+++.+ -+++.|.=|=|||.+.-+.+. .+.... ....++|++|+.+
T Consensus 199 ~~~~~~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~-~~~~~~-----~~~~iiVTAP~~~ 272 (758)
T COG1444 199 LDPVFPRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALA-AAARLA-----GSVRIIVTAPTPA 272 (758)
T ss_pred CCCCCCHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHH-HHHHhc-----CCceEEEeCCCHH
Confidence 33333445555555556555556666666554 489999999999987655442 222211 0346899999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCC
Q 010709 206 LAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG 285 (503)
Q Consensus 206 La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~ 285 (503)
-++.+.+.+.+-+...+ ++.......... ..........|-+..|.... ..-++||||||=.+-
T Consensus 273 nv~~Lf~fa~~~l~~lg-~~~~v~~d~~g~--~~~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaIp--- 336 (758)
T COG1444 273 NVQTLFEFAGKGLEFLG-YKRKVAPDALGE--IREVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAIP--- 336 (758)
T ss_pred HHHHHHHHHHHhHHHhC-Cccccccccccc--eeeecCCceeEEeeCcchhc----------ccCCEEEEehhhcCC---
Confidence 88877766655444331 221111111000 00000112334455554432 126799999997543
Q ss_pred CHHHHHHHHHhCCCCCcEEEEEeeC
Q 010709 286 FEPQIREVMQNLPDKHQTLLFSATM 310 (503)
Q Consensus 286 ~~~~~~~il~~~~~~~q~i~~SAT~ 310 (503)
.+.+.+++..++ .++||.|+
T Consensus 337 -lplL~~l~~~~~----rv~~sTTI 356 (758)
T COG1444 337 -LPLLHKLLRRFP----RVLFSTTI 356 (758)
T ss_pred -hHHHHHHHhhcC----ceEEEeee
Confidence 566777777654 68899998
No 247
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.34 E-value=0.061 Score=55.92 Aligned_cols=153 Identities=13% Similarity=0.139 Sum_probs=81.8
Q ss_pred CCCCCcHHHHHHHHHHh---cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q 010709 140 EYTRPTSIQAQAMPVAL---SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (503)
Q Consensus 140 ~~~~~~~~Q~~~i~~i~---~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 216 (503)
+...|.|.=.+-+..+. ..+-.++.+|=|.|||.+..+.+. .+... .+.+++|++|...-+.++.+.++.
T Consensus 166 np~~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~-~La~f------~Gi~IlvTAH~~~ts~evF~rv~~ 238 (752)
T PHA03333 166 NPEAPSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILA-AMISF------LEIDIVVQAQRKTMCLTLYNRVET 238 (752)
T ss_pred CcCCCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHH-HHHHh------cCCeEEEECCChhhHHHHHHHHHH
Confidence 33344555555555444 455688899999999987544333 33332 256799999999999998888887
Q ss_pred HhccCC-------CceEEEEECCccHHHHH--HHhh-CCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCC
Q 010709 217 LSRSLD-------SFKTAIVVGGTNIAEQR--SELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGF 286 (503)
Q Consensus 217 ~~~~~~-------~~~~~~~~~~~~~~~~~--~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~ 286 (503)
...... ...+..+.|+...-... .... ++..|.+++-. .+...-..++++|+|||+.+-.
T Consensus 239 ~le~lg~~~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAAfI~~--- 308 (752)
T PHA03333 239 VVHAYQHKPWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAAFVNP--- 308 (752)
T ss_pred HHHHhccccccCCCceEEEeeCCeeEEEEecCcccccCcceeEEeccc-------CCCcCCCCCCEEEEECcccCCH---
Confidence 775321 11122222222100000 0000 01233333211 1222334678999999996542
Q ss_pred HHHHHHHHHhCC-CCCcEEEEEeeC
Q 010709 287 EPQIREVMQNLP-DKHQTLLFSATM 310 (503)
Q Consensus 287 ~~~~~~il~~~~-~~~q~i~~SAT~ 310 (503)
..+..++-.+. .+.+++++|.+-
T Consensus 309 -~~l~aIlP~l~~~~~k~IiISS~~ 332 (752)
T PHA03333 309 -GALLSVLPLMAVKGTKQIHISSPV 332 (752)
T ss_pred -HHHHHHHHHHccCCCceEEEeCCC
Confidence 33444444333 345566666664
No 248
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=96.33 E-value=0.02 Score=54.28 Aligned_cols=60 Identities=22% Similarity=0.248 Sum_probs=42.9
Q ss_pred CCCCCcHHHHHHHHHHhcCC-CeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHH
Q 010709 140 EYTRPTSIQAQAMPVALSGR-DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQ 208 (503)
Q Consensus 140 ~~~~~~~~Q~~~i~~i~~~~-~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~ 208 (503)
.+...++-|...+..+...+ +++++|.||||||+. +-++..... ..-++|.+--|.||-.
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl--LNal~~~i~-------~~eRvItiEDtaELql 214 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL--LNALSGFID-------SDERVITIEDTAELQL 214 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH--HHHHHhcCC-------CcccEEEEeehhhhcc
Confidence 45678888999888877666 899999999999983 333333222 1337888888887743
No 249
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.32 E-value=0.047 Score=53.97 Aligned_cols=125 Identities=15% Similarity=0.167 Sum_probs=62.7
Q ss_pred CeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc--ccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHH
Q 010709 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA--PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE 237 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~--Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (503)
-++++||+|+|||+...--+..+.... +.++.++. +.|..+..+ ++.++... ++....
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~~-------G~~V~Lit~Dt~R~aA~eQ---Lk~yAe~l-gvp~~~--------- 284 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHM-------GKSVSLYTTDNYRIAAIEQ---LKRYADTM-GMPFYP--------- 284 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhc-------CCeEEEecccchhhhHHHH---HHHHHHhc-CCCeee---------
Confidence 478999999999986543322222222 34454444 455554432 33333221 121110
Q ss_pred HHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhh-CCCHHHHHHHHHhCC---CCCcEEEEEeeCCH-
Q 010709 238 QRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD-MGFEPQIREVMQNLP---DKHQTLLFSATMPV- 312 (503)
Q Consensus 238 ~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~-~~~~~~~~~il~~~~---~~~q~i~~SAT~~~- 312 (503)
+..+..+...+. -.++++|+||=+-+... ......+..++.... +.-.++.++||...
T Consensus 285 ------------~~~~~~l~~~l~-----~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~ 347 (432)
T PRK12724 285 ------------VKDIKKFKETLA-----RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYH 347 (432)
T ss_pred ------------hHHHHHHHHHHH-----hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHH
Confidence 001222333332 24678999996543311 112344555555442 22357888999876
Q ss_pred HHHHHHHHh
Q 010709 313 EIEALAQEY 321 (503)
Q Consensus 313 ~~~~~~~~~ 321 (503)
++...++.|
T Consensus 348 ~~~~~~~~f 356 (432)
T PRK12724 348 HTLTVLKAY 356 (432)
T ss_pred HHHHHHHHh
Confidence 555555554
No 250
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.32 E-value=0.019 Score=52.67 Aligned_cols=43 Identities=14% Similarity=0.251 Sum_probs=25.5
Q ss_pred CccEEEecchhHHhhCCCHHHHHHHHHhCCCCCc-EEEEEeeCCH
Q 010709 269 RVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQ-TLLFSATMPV 312 (503)
Q Consensus 269 ~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q-~i~~SAT~~~ 312 (503)
..++|||||+|.+... ....+..++........ +++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 4678999999976432 33445555554433333 4677776543
No 251
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.31 E-value=0.021 Score=57.81 Aligned_cols=50 Identities=12% Similarity=0.302 Sum_probs=29.5
Q ss_pred CCccEEEecchhHHhhCC-CHHHHHHHHHhC-CCCCcEEEEEeeCCHHHHHH
Q 010709 268 SRVSFVILDEADRMLDMG-FEPQIREVMQNL-PDKHQTLLFSATMPVEIEAL 317 (503)
Q Consensus 268 ~~~~~vViDEaH~l~~~~-~~~~~~~il~~~-~~~~q~i~~SAT~~~~~~~~ 317 (503)
.+.++++|||+|.+.+.. ....+..++..+ ....++|+.|-+.|..+..+
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l 252 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAM 252 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhh
Confidence 467899999999876542 234444554433 23455665555556665543
No 252
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.31 E-value=0.013 Score=56.50 Aligned_cols=45 Identities=22% Similarity=0.277 Sum_probs=27.3
Q ss_pred cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHH
Q 010709 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI 210 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~ 210 (503)
.++++++.|+||+|||..+ ..+...+... +..|+++. ..+|..+.
T Consensus 182 ~~~~Lll~G~~GtGKThLa-~aIa~~l~~~-------g~~V~y~t-~~~l~~~l 226 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLS-NCIAKELLDR-------GKSVIYRT-ADELIEIL 226 (329)
T ss_pred cCCcEEEECCCCCcHHHHH-HHHHHHHHHC-------CCeEEEEE-HHHHHHHH
Confidence 3577999999999999743 3344444432 44555544 34454443
No 253
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.27 E-value=0.033 Score=56.55 Aligned_cols=109 Identities=13% Similarity=0.117 Sum_probs=57.1
Q ss_pred CeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHH
Q 010709 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR 239 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (503)
.+++.|++|+|||... ..+...+... ..+.+++++.. .++..++...+..-.
T Consensus 143 pl~i~G~~G~GKTHLl-~Ai~~~l~~~-----~~~~~v~yv~~-~~f~~~~~~~l~~~~--------------------- 194 (450)
T PRK14087 143 PLFIYGESGMGKTHLL-KAAKNYIESN-----FSDLKVSYMSG-DEFARKAVDILQKTH--------------------- 194 (450)
T ss_pred ceEEECCCCCcHHHHH-HHHHHHHHHh-----CCCCeEEEEEH-HHHHHHHHHHHHHhh---------------------
Confidence 4899999999999632 3333333321 12455666655 455554444332100
Q ss_pred HHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhC-CCHHHHHHHHHhCC-CCCcEEEEEeeCCHHH
Q 010709 240 SELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM-GFEPQIREVMQNLP-DKHQTLLFSATMPVEI 314 (503)
Q Consensus 240 ~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~-~~~~~~~~il~~~~-~~~q~i~~SAT~~~~~ 314 (503)
+.+..... .+.++++|||||+|.+.+. .....+..++..+. ...|+|+.|-..|..+
T Consensus 195 --------------~~~~~~~~----~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 195 --------------KEIEQFKN----EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred --------------hHHHHHHH----HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 11111111 1346789999999976543 23344555555443 2345655555555444
No 254
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.26 E-value=0.019 Score=53.92 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=21.3
Q ss_pred CCccEEEecchhHHhhCCC--HHHHHHHHHhCCCCC
Q 010709 268 SRVSFVILDEADRMLDMGF--EPQIREVMQNLPDKH 301 (503)
Q Consensus 268 ~~~~~vViDEaH~l~~~~~--~~~~~~il~~~~~~~ 301 (503)
-+++++||||+|+++.... ...+...++.+.+..
T Consensus 144 ~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL 179 (302)
T PF05621_consen 144 LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNEL 179 (302)
T ss_pred cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhcc
Confidence 3578999999999865432 233444455554433
No 255
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.25 E-value=0.014 Score=62.64 Aligned_cols=70 Identities=23% Similarity=0.169 Sum_probs=52.9
Q ss_pred CCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q 010709 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (503)
Q Consensus 143 ~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 218 (503)
.+++-|.+++.. ....++|.|..|||||.+. +.-+.+++... +-...++|+++.|+..|..+.+++..+.
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL-~~Ria~Li~~~---~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVI-TNKIAHLIRGC---GYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHH-HHHHHHHHHhc---CCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 467889998865 3567899999999999875 44455555431 1234679999999999999999998765
No 256
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.24 E-value=0.027 Score=54.89 Aligned_cols=132 Identities=17% Similarity=0.229 Sum_probs=70.3
Q ss_pred CCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccc-HHHHHHHHHHHHHHhccCCCceEEEEECCccHH
Q 010709 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPT-RELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA 236 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Pt-r~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (503)
++.+.++||||.|||+...=-+..+.+.. ......||.+-| |.=|. ++++.|++-+ ++.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~-----~~~kVaiITtDtYRIGA~---EQLk~Ya~im-~vp~---------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLK-----KKKKVAIITTDTYRIGAV---EQLKTYADIM-GVPL---------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhc-----cCcceEEEEeccchhhHH---HHHHHHHHHh-CCce----------
Confidence 67799999999999986432222222111 123445555543 33322 3344444322 2333
Q ss_pred HHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhC-CCHHHHHHHHHhCCCCCcEEEEEeeCC-HHH
Q 010709 237 EQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM-GFEPQIREVMQNLPDKHQTLLFSATMP-VEI 314 (503)
Q Consensus 237 ~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~-~~~~~~~~il~~~~~~~q~i~~SAT~~-~~~ 314 (503)
.++-+|.-|...+.. +.++++|.||=+-+--.. .....+..++..-.+---.+.+|||.. .++
T Consensus 264 -----------~vv~~~~el~~ai~~----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dl 328 (407)
T COG1419 264 -----------EVVYSPKELAEAIEA----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDL 328 (407)
T ss_pred -----------EEecCHHHHHHHHHH----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHH
Confidence 234455555555543 566788888877642111 123344555554444444677888874 456
Q ss_pred HHHHHHhcC
Q 010709 315 EALAQEYLT 323 (503)
Q Consensus 315 ~~~~~~~~~ 323 (503)
..++..|-.
T Consensus 329 kei~~~f~~ 337 (407)
T COG1419 329 KEIIKQFSL 337 (407)
T ss_pred HHHHHHhcc
Confidence 666666643
No 257
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=96.21 E-value=0.031 Score=64.10 Aligned_cols=123 Identities=24% Similarity=0.235 Sum_probs=77.9
Q ss_pred CcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCC
Q 010709 144 PTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDS 223 (503)
Q Consensus 144 ~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~ 223 (503)
.|+-|.++|.. .+++++|.|..|||||.+..--++..+... ....++|+|+=|+..|..+.+++.+-....
T Consensus 2 ~t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-----~~~~~il~~tFt~~aa~e~~~ri~~~l~~~-- 72 (1232)
T TIGR02785 2 WTDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRG-----VDIDRLLVVTFTNAAAREMKERIEEALQKA-- 72 (1232)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcC-----CCHhhEEEEeccHHHHHHHHHHHHHHHHHH--
Confidence 57889999974 688999999999999987655555544321 122469999999999999998888655321
Q ss_pred ceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCc--cEEEecchhH
Q 010709 224 FKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRV--SFVILDEADR 280 (503)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~--~~vViDEaH~ 280 (503)
+. .........+.+..-...-|+|...++..+.+.....-++ .+=|.||...
T Consensus 73 ~~-----~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 73 LQ-----QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred Hh-----cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 10 0111111222233335667899998876665543222122 3456888774
No 258
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.17 E-value=0.062 Score=44.23 Aligned_cols=15 Identities=33% Similarity=0.417 Sum_probs=12.9
Q ss_pred eEEEccCCCchhHHh
Q 010709 161 LLGCAETGSGKTAAF 175 (503)
Q Consensus 161 vii~~~TGsGKTl~~ 175 (503)
+++.||+|+|||..+
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 589999999999743
No 259
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.17 E-value=0.028 Score=54.22 Aligned_cols=16 Identities=25% Similarity=0.382 Sum_probs=14.3
Q ss_pred CeEEEccCCCchhHHh
Q 010709 160 DLLGCAETGSGKTAAF 175 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~ 175 (503)
+.|+.||+|+|||+.+
T Consensus 50 SmIl~GPPG~GKTTlA 65 (436)
T COG2256 50 SMILWGPPGTGKTTLA 65 (436)
T ss_pred eeEEECCCCCCHHHHH
Confidence 5999999999999854
No 260
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=96.16 E-value=0.014 Score=50.68 Aligned_cols=103 Identities=18% Similarity=0.169 Sum_probs=56.3
Q ss_pred eEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHH
Q 010709 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRS 240 (503)
Q Consensus 161 vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (503)
.+++||++||||.-.+.-+-.+ .. .+.++++..|...-- +.. -.+.... |.
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~-~~-------~g~~v~vfkp~iD~R---------~~~----~~V~Sr~-G~------- 57 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRY-KE-------AGMKVLVFKPAIDTR---------YGV----GKVSSRI-GL------- 57 (201)
T ss_pred EEEEccCcCcchHHHHHHHHHH-HH-------cCCeEEEEecccccc---------ccc----ceeeecc-CC-------
Confidence 6899999999998543322222 22 256788888864211 110 0111111 11
Q ss_pred HhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhC
Q 010709 241 ELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL 297 (503)
Q Consensus 241 ~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~ 297 (503)
....++|-.+..+.+.+....... .+++|.||||+-+. ......+.++...+
T Consensus 58 ---~~~A~~i~~~~~i~~~i~~~~~~~-~~~~v~IDEaQF~~-~~~v~~l~~lad~l 109 (201)
T COG1435 58 ---SSEAVVIPSDTDIFDEIAALHEKP-PVDCVLIDEAQFFD-EELVYVLNELADRL 109 (201)
T ss_pred ---cccceecCChHHHHHHHHhcccCC-CcCEEEEehhHhCC-HHHHHHHHHHHhhc
Confidence 113456667777777776533222 28899999999543 32334455555543
No 261
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.15 E-value=0.091 Score=55.62 Aligned_cols=39 Identities=13% Similarity=0.264 Sum_probs=25.7
Q ss_pred CCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEE
Q 010709 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (503)
Q Consensus 268 ~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~S 307 (503)
.+++++||||+|+|.... .+.+.+++..-++...+|+.+
T Consensus 118 gr~KVIIIDEah~LT~~A-~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA-FNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHHH-HHHHHHHHHhcCCCeEEEEEE
Confidence 468999999999875432 344556666656566555544
No 262
>PTZ00293 thymidine kinase; Provisional
Probab=96.14 E-value=0.039 Score=49.21 Aligned_cols=39 Identities=15% Similarity=0.138 Sum_probs=25.6
Q ss_pred CCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccH
Q 010709 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR 204 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr 204 (503)
|.=-++.||+++|||.-.+- .+...... +.+++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLLr-~i~~y~~a-------g~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMR-LVKRFTYS-------EKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHHH-HHHHHHHc-------CCceEEEEecc
Confidence 33468899999999975433 33332222 56688888864
No 263
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.14 E-value=0.044 Score=55.00 Aligned_cols=52 Identities=17% Similarity=0.289 Sum_probs=30.6
Q ss_pred ccEEEecchhHHhhC-CCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHh
Q 010709 270 VSFVILDEADRMLDM-GFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEY 321 (503)
Q Consensus 270 ~~~vViDEaH~l~~~-~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~ 321 (503)
.++||||.+-++... .....+..+.....++.-++.++|+...+....++.|
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F 228 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAF 228 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHH
Confidence 378999988543211 1233445555555566667777888766555555554
No 264
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.14 E-value=0.02 Score=56.94 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=25.4
Q ss_pred CcHHHHHHHHHHhcCCCeEEEccCCCchhHHh
Q 010709 144 PTSIQAQAMPVALSGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 144 ~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~ 175 (503)
+.......+..+..++++++.||+|+|||..+
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 44455666677778999999999999999754
No 265
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.13 E-value=0.0093 Score=55.46 Aligned_cols=54 Identities=19% Similarity=0.299 Sum_probs=47.7
Q ss_pred HHHHHHhcCCCcEEEEccccccCCCCCC--------CCEEEEccCCCChhHHHHhhCcceee
Q 010709 415 SALRDFRNGSTNILVATDVASRGLDVMG--------VAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 415 ~~~~~f~~g~~~vLvaT~~~~~Gldip~--------v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
...+.|.+|+..|+|.++++++|+.+.. -++-|.+.+|++....+|..||+.|+
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRs 113 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRS 113 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhcccccc
Confidence 5567899999999999999999999874 24567889999999999999999996
No 266
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.12 E-value=0.061 Score=56.57 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=25.3
Q ss_pred CCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEE
Q 010709 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLF 306 (503)
Q Consensus 268 ~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~ 306 (503)
.+++++||||+|+|... -.+.+.+.+..-++...+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~-a~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHH-HHHHHHHHHHcCCCCeEEEEe
Confidence 57899999999987543 244555566665555555554
No 267
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.12 E-value=0.035 Score=59.86 Aligned_cols=70 Identities=19% Similarity=0.107 Sum_probs=52.3
Q ss_pred CcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhc
Q 010709 144 PTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (503)
Q Consensus 144 ~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~ 219 (503)
+++-|.+++.. ...+++|.|..|||||.+. +--+.+++... .....++|+|+.|+..|.++.+++.+...
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L-~~ri~~ll~~~---~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVI-TNKIAYLIQNC---GYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHH-HHHHHHHHHhc---CCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 67789888765 3568999999999999875 44444555421 11346799999999999999999987653
No 268
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.11 E-value=0.057 Score=53.84 Aligned_cols=43 Identities=21% Similarity=0.149 Sum_probs=25.3
Q ss_pred CeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc--ccHHHHHHH
Q 010709 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA--PTRELAQQI 210 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~--Ptr~La~q~ 210 (503)
.++++|++|+|||+... -+...+.. .+.+++++. +.|..|.++
T Consensus 102 vi~lvG~~GvGKTTtaa--KLA~~l~~------~G~kV~lV~~D~~R~aA~eQ 146 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCT--KLAYYYQR------KGFKPCLVCADTFRAGAFDQ 146 (429)
T ss_pred EEEEECCCCCCHHHHHH--HHHHHHHH------CCCCEEEEcCcccchhHHHH
Confidence 47899999999997543 22222222 144566655 556544443
No 269
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.10 E-value=0.052 Score=46.80 Aligned_cols=43 Identities=16% Similarity=0.389 Sum_probs=31.2
Q ss_pred CCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCC
Q 010709 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMP 311 (503)
Q Consensus 268 ~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~ 311 (503)
..++++||||||.|... -...+.+.+..-+....++++|..+.
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECChH
Confidence 57899999999987533 46677788888777787777666553
No 270
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.09 E-value=0.036 Score=66.02 Aligned_cols=64 Identities=25% Similarity=0.285 Sum_probs=45.1
Q ss_pred CCCcHHHHHHHHHHhcCCC--eEEEccCCCchhHHhHH--HHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHH
Q 010709 142 TRPTSIQAQAMPVALSGRD--LLGCAETGSGKTAAFTI--PMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIE 211 (503)
Q Consensus 142 ~~~~~~Q~~~i~~i~~~~~--vii~~~TGsGKTl~~~l--p~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~ 211 (503)
..+++.|.+|+..++.+.+ ++|.|..|+|||+...- -.+...... .+..++.++||-..+..+.
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~------~g~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES------EQLQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh------cCCeEEEEeChHHHHHHHH
Confidence 4689999999999987644 78899999999975410 122222221 2567899999987766553
No 271
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.09 E-value=0.021 Score=58.67 Aligned_cols=152 Identities=16% Similarity=0.142 Sum_probs=81.4
Q ss_pred HHHHHHHHHHh-----cC----CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q 010709 146 SIQAQAMPVAL-----SG----RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (503)
Q Consensus 146 ~~Q~~~i~~i~-----~~----~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 216 (503)
|+|...+..++ .| +.+++.-|=|-|||......++..+... +..+..+++++++++-|..+.+.++.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~----g~~~~~i~~~A~~~~QA~~~f~~~~~ 76 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD----GEPGAEIYCAANTRDQAKIVFDEAKK 76 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC----CccCceEEEEeCCHHHHHHHHHHHHH
Confidence 56777777666 22 2488888999999975433333333322 23467899999999999999999988
Q ss_pred HhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcC--CCCCCCccEEEecchhHHhhCCCHHHHHHHH
Q 010709 217 LSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG--NTSLSRVSFVILDEADRMLDMGFEPQIREVM 294 (503)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~--~~~l~~~~~vViDEaH~l~~~~~~~~~~~il 294 (503)
+....+.+.... ... . .. . ....|..-..+.+...+... ...-.+..++|+||+|.+-+......+..-+
T Consensus 77 ~i~~~~~l~~~~--~~~-~---~~-~-~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~ 148 (477)
T PF03354_consen 77 MIEASPELRKRK--KPK-I---IK-S-NKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGM 148 (477)
T ss_pred HHHhChhhccch--hhh-h---hh-h-hceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhh
Confidence 876533222100 000 0 00 0 01122222212222222221 1222356899999999765433344444444
Q ss_pred HhCCCCCcEEEEEee
Q 010709 295 QNLPDKHQTLLFSAT 309 (503)
Q Consensus 295 ~~~~~~~q~i~~SAT 309 (503)
...+.+.-+++.||.
T Consensus 149 ~~r~~pl~~~ISTag 163 (477)
T PF03354_consen 149 GARPNPLIIIISTAG 163 (477)
T ss_pred ccCCCceEEEEeCCC
Confidence 443333333333443
No 272
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.06 E-value=0.03 Score=54.25 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=26.5
Q ss_pred CccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEE
Q 010709 269 RVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (503)
Q Consensus 269 ~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~S 307 (503)
..++|||||+|.+........+..++...+...++|+.+
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 467999999998733323455666777777777666544
No 273
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.05 E-value=0.05 Score=53.28 Aligned_cols=40 Identities=13% Similarity=0.297 Sum_probs=26.2
Q ss_pred CCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEE
Q 010709 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (503)
Q Consensus 267 l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~S 307 (503)
....++|||||+|.+... ....+..++...++..++|+.+
T Consensus 123 ~~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 123 SADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEe
Confidence 345789999999976432 3445666666666666655544
No 274
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.05 E-value=0.051 Score=57.88 Aligned_cols=66 Identities=15% Similarity=0.137 Sum_probs=33.4
Q ss_pred CcHHHHHHHHcCCCCCCCccEEEecchhHHhhC-CCHHHHHHHHHhCCCCCcEEEEEeeCC-HHHHHHHHHh
Q 010709 252 TPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM-GFEPQIREVMQNLPDKHQTLLFSATMP-VEIEALAQEY 321 (503)
Q Consensus 252 Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~-~~~~~~~~il~~~~~~~q~i~~SAT~~-~~~~~~~~~~ 321 (503)
+|..+.+.+.. +.++++|+||=+=+.-.. .....+..+.....+...++.++||.. ..+.++++.|
T Consensus 250 ~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f 317 (767)
T PRK14723 250 DAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAY 317 (767)
T ss_pred CHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHH
Confidence 55555555542 345577888777643211 112223333333344455677788764 3344455555
No 275
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.05 E-value=0.031 Score=56.63 Aligned_cols=51 Identities=12% Similarity=0.333 Sum_probs=28.7
Q ss_pred CccEEEecchhHHhhCC-CHHHHHHHHHhCC-CCCcEEEEEeeCCHHHHHHHH
Q 010709 269 RVSFVILDEADRMLDMG-FEPQIREVMQNLP-DKHQTLLFSATMPVEIEALAQ 319 (503)
Q Consensus 269 ~~~~vViDEaH~l~~~~-~~~~~~~il~~~~-~~~q~i~~SAT~~~~~~~~~~ 319 (503)
+.++|+|||+|.+.+.. ....+..++..+. ...++|+.|...|..+..+..
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~ 246 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQD 246 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHH
Confidence 47799999999876542 2233444444332 234555555455555554433
No 276
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.05 E-value=0.01 Score=53.97 Aligned_cols=49 Identities=18% Similarity=0.297 Sum_probs=30.5
Q ss_pred CCCccEEEecchhHHhhC-CCHHHHHHHHHhCC-CCCcEEEEEeeCCHHHH
Q 010709 267 LSRVSFVILDEADRMLDM-GFEPQIREVMQNLP-DKHQTLLFSATMPVEIE 315 (503)
Q Consensus 267 l~~~~~vViDEaH~l~~~-~~~~~~~~il~~~~-~~~q~i~~SAT~~~~~~ 315 (503)
+..+++++||++|.+.+. .....+..++..+. .+.++|+.|...|..+.
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~ 145 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELS 145 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTT
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcccc
Confidence 346889999999987654 23445555555542 34567777767766543
No 277
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.01 E-value=0.0026 Score=55.08 Aligned_cols=123 Identities=21% Similarity=0.293 Sum_probs=52.3
Q ss_pred EEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHH
Q 010709 162 LGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSE 241 (503)
Q Consensus 162 ii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (503)
|+.|+=|-|||.+.-+. +..+... ...+++|.+|+.+-++.+.+.+..-.+... ++....... ......
T Consensus 1 VltA~RGRGKSa~lGl~-~a~l~~~------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~-~~~~~~~~~---~~~~~~ 69 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLA-AAALIQK------GKIRILVTAPSPENVQTLFEFAEKGLKALG-YKEEKKKRI---GQIIKL 69 (177)
T ss_dssp -EEE-TTSSHHHHHHHC-CCCSSS-----------EEEE-SS--S-HHHHHCC---------------------------
T ss_pred CccCCCCCCHHHHHHHH-HHHHHHh------cCceEEEecCCHHHHHHHHHHHHhhccccc-ccccccccc---cccccc
Confidence 57899999999754332 1122221 124699999999888777665544332221 111000000 000001
Q ss_pred hhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeC
Q 010709 242 LRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (503)
Q Consensus 242 ~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~ 310 (503)
...+..|-+..|+.+.... ...+++|||||=.+- .+.+.+++...+ .++||.|.
T Consensus 70 ~~~~~~i~f~~Pd~l~~~~-------~~~DlliVDEAAaIp----~p~L~~ll~~~~----~vv~stTi 123 (177)
T PF05127_consen 70 RFNKQRIEFVAPDELLAEK-------PQADLLIVDEAAAIP----LPLLKQLLRRFP----RVVFSTTI 123 (177)
T ss_dssp ---CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHCCSS----EEEEEEEB
T ss_pred ccccceEEEECCHHHHhCc-------CCCCEEEEechhcCC----HHHHHHHHhhCC----EEEEEeec
Confidence 1124667777777765321 235899999997543 455666655543 57778887
No 278
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.00 E-value=0.042 Score=56.09 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=26.2
Q ss_pred CccEEEecchhHHhhCC-CHHHHHHHHHhC-CCCCcEEEEEeeCCHHHH
Q 010709 269 RVSFVILDEADRMLDMG-FEPQIREVMQNL-PDKHQTLLFSATMPVEIE 315 (503)
Q Consensus 269 ~~~~vViDEaH~l~~~~-~~~~~~~il~~~-~~~~q~i~~SAT~~~~~~ 315 (503)
++++|||||+|.+.+.. ....+..++..+ ....++++.|...|..+.
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~ 259 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELP 259 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHH
Confidence 57799999999875432 223344444433 223455555544554544
No 279
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.96 E-value=0.21 Score=42.64 Aligned_cols=54 Identities=22% Similarity=0.352 Sum_probs=41.9
Q ss_pred CCCCccEEEecchhHHhhCC--CHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHH
Q 010709 266 SLSRVSFVILDEADRMLDMG--FEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQ 319 (503)
Q Consensus 266 ~l~~~~~vViDEaH~l~~~~--~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~ 319 (503)
....+++||+||+=..++.+ -...+..+++..++..-+|+.+-.+|+.+.+.+.
T Consensus 92 ~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 92 ASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred hcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 35679999999999877766 4567788888888888788877788888776544
No 280
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.96 E-value=0.053 Score=52.80 Aligned_cols=18 Identities=33% Similarity=0.381 Sum_probs=15.1
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
++.++++||+|+|||+..
T Consensus 206 ~~ii~lvGptGvGKTTt~ 223 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTL 223 (407)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999864
No 281
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.95 E-value=0.031 Score=53.68 Aligned_cols=65 Identities=28% Similarity=0.273 Sum_probs=40.8
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHh-cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHH
Q 010709 134 KDIEFHEYTRPTSIQAQAMPVAL-SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (503)
Q Consensus 134 ~~l~~~~~~~~~~~Q~~~i~~i~-~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~L 206 (503)
..+...|. +++.|.+.+..+. .+++++|+|+||||||+.. -.++..+...+ .+.+++.+=.+.||
T Consensus 121 ~~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~-----~~~rivtiEd~~El 186 (323)
T PRK13833 121 DDYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVASA-----PEDRLVILEDTAEI 186 (323)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCC-----CCceEEEecCCccc
Confidence 44444444 4566777776654 5678999999999999842 44444433221 13456766677776
No 282
>PLN03025 replication factor C subunit; Provisional
Probab=95.95 E-value=0.12 Score=50.12 Aligned_cols=41 Identities=29% Similarity=0.383 Sum_probs=26.2
Q ss_pred CCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeC
Q 010709 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (503)
Q Consensus 268 ~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~ 310 (503)
.+.+++||||+|.|... -...+.+.+...++...+++ +++.
T Consensus 98 ~~~kviiiDE~d~lt~~-aq~aL~~~lE~~~~~t~~il-~~n~ 138 (319)
T PLN03025 98 GRHKIVILDEADSMTSG-AQQALRRTMEIYSNTTRFAL-ACNT 138 (319)
T ss_pred CCeEEEEEechhhcCHH-HHHHHHHHHhcccCCceEEE-EeCC
Confidence 35789999999987543 24556666666555555444 4443
No 283
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.85 E-value=0.013 Score=52.02 Aligned_cols=39 Identities=31% Similarity=0.427 Sum_probs=26.6
Q ss_pred CCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEE
Q 010709 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLF 306 (503)
Q Consensus 267 l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~ 306 (503)
..+.+.||+||||.|-+ |-...+++.+....+..++.+.
T Consensus 111 ~grhKIiILDEADSMT~-gAQQAlRRtMEiyS~ttRFala 149 (333)
T KOG0991|consen 111 PGRHKIIILDEADSMTA-GAQQALRRTMEIYSNTTRFALA 149 (333)
T ss_pred CCceeEEEeeccchhhh-HHHHHHHHHHHHHcccchhhhh
Confidence 46788999999997753 3455677777666555555443
No 284
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.84 E-value=0.1 Score=52.99 Aligned_cols=19 Identities=32% Similarity=0.321 Sum_probs=15.4
Q ss_pred CCCeEEEccCCCchhHHhH
Q 010709 158 GRDLLGCAETGSGKTAAFT 176 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~~ 176 (503)
|+.+.++||||+|||++..
T Consensus 256 g~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTA 274 (484)
T ss_pred CcEEEEECCCCccHHHHHH
Confidence 3458899999999998643
No 285
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.82 E-value=0.11 Score=50.58 Aligned_cols=43 Identities=19% Similarity=0.183 Sum_probs=29.0
Q ss_pred CCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeC
Q 010709 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (503)
Q Consensus 267 l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~ 310 (503)
...++++|||+||+|... -.+.+.+.+..-++...+|++|.-+
T Consensus 130 ~~~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~t~fiL~t~~~ 172 (342)
T PRK06964 130 RGGARVVVLYPAEALNVA-AANALLKTLEEPPPGTVFLLVSARI 172 (342)
T ss_pred cCCceEEEEechhhcCHH-HHHHHHHHhcCCCcCcEEEEEECCh
Confidence 467899999999987533 3556667777656666555555443
No 286
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.81 E-value=0.12 Score=55.61 Aligned_cols=73 Identities=16% Similarity=0.267 Sum_probs=62.5
Q ss_pred CcEEEEEcchhhHHHHHHHHHHC-CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEE
Q 010709 375 PLTIVFVERKTRCDEVSEALVAE-GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN 448 (503)
Q Consensus 375 ~~~lIF~~~~~~~~~l~~~L~~~-~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~ 448 (503)
+++||.++++..+.++.+.|++. +..+..+||+++..+|.+.+....+|+.+|+|+|..+- -+.+.++.+||.
T Consensus 191 ~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~liVv 264 (679)
T PRK05580 191 KQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLGLIIV 264 (679)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCCEEEE
Confidence 46999999999999999999874 78899999999999999999999999999999996432 245667887774
No 287
>PRK09183 transposase/IS protein; Provisional
Probab=95.79 E-value=0.059 Score=50.42 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=17.7
Q ss_pred HhcCCCeEEEccCCCchhHHh
Q 010709 155 ALSGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 155 i~~~~~vii~~~TGsGKTl~~ 175 (503)
+..+.++++.||+|+|||..+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa 119 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLA 119 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHH
Confidence 456788999999999999744
No 288
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.78 E-value=0.025 Score=58.59 Aligned_cols=49 Identities=14% Similarity=0.257 Sum_probs=29.8
Q ss_pred CCCccEEEecchhHHhhCC-CHHHHHHHHHhCCC-CCcEEEEEeeCCHHHH
Q 010709 267 LSRVSFVILDEADRMLDMG-FEPQIREVMQNLPD-KHQTLLFSATMPVEIE 315 (503)
Q Consensus 267 l~~~~~vViDEaH~l~~~~-~~~~~~~il~~~~~-~~q~i~~SAT~~~~~~ 315 (503)
+.++++|||||+|.+.+.. ....+..++..+.. ..++|+.|-..|.++.
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLV 425 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhh
Confidence 3457899999999775542 23445555555433 4566665555555544
No 289
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.78 E-value=0.04 Score=59.23 Aligned_cols=74 Identities=15% Similarity=0.274 Sum_probs=64.2
Q ss_pred CcEEEEEcchhhHHHHHHHHHHC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-ccccCCCCCCCCEEEE
Q 010709 375 PLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VASRGLDVMGVAHVVN 448 (503)
Q Consensus 375 ~~~lIF~~~~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~~Gldip~v~~VI~ 448 (503)
.+++|.++++.-|.++++.+++. ++.+..+||+++..+|.++++.+.+|+..|+|+|. .+...+.+.++.+||.
T Consensus 311 ~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 311 YQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred CeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEEE
Confidence 46999999999999888877653 68999999999999999999999999999999995 5556678888888774
No 290
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.78 E-value=0.088 Score=54.24 Aligned_cols=39 Identities=13% Similarity=0.248 Sum_probs=26.6
Q ss_pred CCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEE
Q 010709 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (503)
Q Consensus 268 ~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~S 307 (503)
.+++++||||+|+|.... .+.+.+.+...++...+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a-~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHS-FNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHH-HHHHHHHHhccCCCeEEEEEE
Confidence 468999999999875432 344556666666666665544
No 291
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.77 E-value=0.67 Score=48.04 Aligned_cols=163 Identities=18% Similarity=0.230 Sum_probs=94.2
Q ss_pred CccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcC-CCeEEE----------------eC
Q 010709 269 RVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLT-DPVQVK----------------VG 331 (503)
Q Consensus 269 ~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~-~~~~~~----------------~~ 331 (503)
.++++.+|-|.++ ..++...+ -+++..+|+.+ +.++....+. .|..+. +-
T Consensus 526 ~lky~lL~pA~~f---------~evv~ear---avvLAGGTMeP-~~e~~e~L~~~~~~~i~~fsc~Hvip~e~il~~vv 592 (821)
T KOG1133|consen 526 TLKYMLLNPAKHF---------AEVVLEAR---AVVLAGGTMEP-VDELREQLFPGCPERISPFSCSHVIPPENILPLVV 592 (821)
T ss_pred eEEEEecCcHHHH---------HHHHHHhh---eeeecCCcccc-HHHHHHHhcccchhhccceecccccChhheeeeee
Confidence 4688888888763 33333322 37788888843 3444444433 111110 00
Q ss_pred CCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCC-------eEEEE
Q 010709 332 KVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGL-------HAVAL 404 (503)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~-------~v~~l 404 (503)
..+.....+...+..-....-++.+...+.+.... -++.+++|+++.+....+.+.+.+.|+ +-+.+
T Consensus 593 ~~gpsg~p~eftf~~R~s~~~l~~l~~~~~nL~~~------VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~ 666 (821)
T KOG1133|consen 593 SSGPSGQPLEFTFETRESPEMIKDLGSSISNLSNA------VPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFY 666 (821)
T ss_pred ccCCCCCceEEEeeccCChHHHHHHHHHHHHHHhh------CCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhc
Confidence 00111112223333333444555555555443322 236799999999999999999987654 22333
Q ss_pred cCCCCHHHHHHHHHHHh----cCCCcEEEEc--cccccCCCCCC--CCEEEEccCCC
Q 010709 405 HGGRNQSDRESALRDFR----NGSTNILVAT--DVASRGLDVMG--VAHVVNLDLPK 453 (503)
Q Consensus 405 h~~~~~~~r~~~~~~f~----~g~~~vLvaT--~~~~~Gldip~--v~~VI~~~~p~ 453 (503)
-...+ -..+++.|. .|.-.+|+|. .-+++|||+.+ .+.||.+|+|-
T Consensus 667 E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPy 720 (821)
T KOG1133|consen 667 EPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFSDDLGRAVVVVGLPY 720 (821)
T ss_pred cCccc---HHHHHHHHHHHhhcCCCeEEEEEeccccccccccccccccEEEEeecCC
Confidence 33333 345666664 4566788777 78899999997 78999999884
No 292
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.76 E-value=0.034 Score=56.28 Aligned_cols=88 Identities=19% Similarity=0.204 Sum_probs=55.2
Q ss_pred HHHHHHHHHCCCCCCcH----HHHHHHHHHh--cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccc
Q 010709 130 PSIMKDIEFHEYTRPTS----IQAQAMPVAL--SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPT 203 (503)
Q Consensus 130 ~~l~~~l~~~~~~~~~~----~Q~~~i~~i~--~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Pt 203 (503)
+-|...|.+..-..++. +|.+-=+.+. .++-+||+|..|||||++++-- +.+++.... +.-.++.|||+.|.
T Consensus 192 EvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHR-vAyLlY~~R-~~l~~k~vlvl~PN 269 (747)
T COG3973 192 EVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHR-VAYLLYGYR-GPLQAKPVLVLGPN 269 (747)
T ss_pred HHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHH-HHHHHhccc-cccccCceEEEcCc
Confidence 34455666654444433 2444333444 4455999999999999987443 333333211 11234449999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 010709 204 RELAQQIEKEVKALSR 219 (503)
Q Consensus 204 r~La~q~~~~~~~~~~ 219 (503)
+.+..-+.+.+-+++.
T Consensus 270 ~vFleYis~VLPeLGe 285 (747)
T COG3973 270 RVFLEYISRVLPELGE 285 (747)
T ss_pred HHHHHHHHHhchhhcc
Confidence 9999988888888774
No 293
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.75 E-value=0.078 Score=51.51 Aligned_cols=40 Identities=20% Similarity=0.393 Sum_probs=27.5
Q ss_pred CCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEE
Q 010709 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (503)
Q Consensus 267 l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~S 307 (503)
...+++||||||+.|.. +-...+.+.+..-+.+..+++.+
T Consensus 107 ~~~~kviiidead~mt~-~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 107 EGGYKVVIIDEADKLTE-DAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred CCCceEEEeCcHHHHhH-HHHHHHHHHhccCCCCeEEEEEc
Confidence 36789999999998754 24555666666666666555544
No 294
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.74 E-value=0.088 Score=57.26 Aligned_cols=40 Identities=18% Similarity=0.234 Sum_probs=27.8
Q ss_pred CCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEE
Q 010709 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (503)
Q Consensus 267 l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~S 307 (503)
..+++++||||+|+|... -.+.+.+++...+....+|+.+
T Consensus 118 ~~~~KV~IIDEad~lt~~-a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQ-GFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred cCCceEEEEechhhcCHH-HHHHHHHHHhCCCCCeEEEEEe
Confidence 357899999999987543 3445666777766666555544
No 295
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.74 E-value=0.055 Score=58.89 Aligned_cols=72 Identities=25% Similarity=0.236 Sum_probs=54.3
Q ss_pred CCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhc
Q 010709 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (503)
Q Consensus 142 ~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~ 219 (503)
..+++-|.+++.. ...+++|.|..|||||.+. +--+.+++.... -...++|+++-|+..|..+.+++.++..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l-~~ria~Li~~~~---i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVL-THRIAHLIAEKN---VAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHH-HHHHHHHHHcCC---CCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 3578889999875 3567999999999999875 444445554321 1245799999999999999999988754
No 296
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.73 E-value=0.02 Score=53.84 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=14.8
Q ss_pred CCeEEEccCCCchhHHh
Q 010709 159 RDLLGCAETGSGKTAAF 175 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~ 175 (503)
.++++.||+|+|||..+
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 46899999999999854
No 297
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.72 E-value=0.32 Score=45.79 Aligned_cols=55 Identities=15% Similarity=0.272 Sum_probs=31.6
Q ss_pred CCccEEEecchhHHhhC-CCHHHHHHHHHhCC------CCCcEEEEEeeCCHHHHHHHHHhc
Q 010709 268 SRVSFVILDEADRMLDM-GFEPQIREVMQNLP------DKHQTLLFSATMPVEIEALAQEYL 322 (503)
Q Consensus 268 ~~~~~vViDEaH~l~~~-~~~~~~~~il~~~~------~~~q~i~~SAT~~~~~~~~~~~~~ 322 (503)
.++++||||=+-++... .....+.++....+ +.-.++.++||...+....+..|.
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~ 214 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFN 214 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHH
Confidence 45778888877654211 12334455544443 455678889987665444555554
No 298
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.72 E-value=0.045 Score=51.73 Aligned_cols=40 Identities=23% Similarity=0.211 Sum_probs=25.2
Q ss_pred HhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 010709 155 ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (503)
Q Consensus 155 i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~ 201 (503)
+..|.-+++.|++|+|||+.... +....... .+..++++.
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~-~~~~~~~~------~g~~vl~iS 66 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLRE-YALDLITQ------HGVRVGTIS 66 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHH-HHHHHHHh------cCceEEEEE
Confidence 34667799999999999974432 22232221 145677776
No 299
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.70 E-value=0.015 Score=52.00 Aligned_cols=16 Identities=31% Similarity=0.324 Sum_probs=14.0
Q ss_pred CeEEEccCCCchhHHh
Q 010709 160 DLLGCAETGSGKTAAF 175 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~ 175 (503)
++++.||+|+|||+.+
T Consensus 52 h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLA 67 (233)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred eEEEECCCccchhHHH
Confidence 5999999999999843
No 300
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.68 E-value=0.078 Score=55.25 Aligned_cols=42 Identities=12% Similarity=0.262 Sum_probs=27.0
Q ss_pred CCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEee
Q 010709 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 309 (503)
Q Consensus 267 l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 309 (503)
..+++++||||+|+|.... .+.+.+.+..-++...+|+.|--
T Consensus 122 ~gr~KViIIDEah~Ls~~A-aNALLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHA-FNAMLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred cCCceEEEEEChHhcCHHH-HHHHHHhhccCCCCceEEEEeCC
Confidence 4568999999999875432 23455555555556666665543
No 301
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.67 E-value=0.057 Score=54.19 Aligned_cols=144 Identities=13% Similarity=0.240 Sum_probs=79.7
Q ss_pred eEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHH-HHHHHHHHHHHHhccCCCceEEEEECCccHHHHH
Q 010709 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE-LAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR 239 (503)
Q Consensus 161 vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~-La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (503)
.++.|..|||||.+...-++..++.. ..+.+++++-++.. |...+...+......+. +........... ..
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~-----~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g-~~~~~~~~~~~~--~i 75 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAIN-----KKQQNILAARKVQNSIRDSVFKDIENLLSIEG-INYEFKKSKSSM--EI 75 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhc-----CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcC-ChhheeecCCcc--EE
Confidence 68899999999998877777776664 12567888888875 66666677765554331 211111111100 00
Q ss_pred HHhhC-CCcEEEECc-HHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhCCC--CCcEEEEEeeCCHHHH
Q 010709 240 SELRG-GVSIVVATP-GRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPD--KHQTLLFSATMPVEIE 315 (503)
Q Consensus 240 ~~~~~-~~~Ilv~Tp-~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~--~~q~i~~SAT~~~~~~ 315 (503)
.+.. +..|++..- +...+ +. ....+.++.+|||..+. ...+..++..++. ....+++|.+|+....
T Consensus 76 -~~~~~g~~i~f~g~~d~~~~-ik----~~~~~~~~~idEa~~~~----~~~~~~l~~rlr~~~~~~~i~~t~NP~~~~~ 145 (396)
T TIGR01547 76 -KILNTGKKFIFKGLNDKPNK-LK----SGAGIAIIWFEEASQLT----FEDIKELIPRLRETGGKKFIIFSSNPESPLH 145 (396)
T ss_pred -EecCCCeEEEeecccCChhH-hh----CcceeeeehhhhhhhcC----HHHHHHHHHHhhccCCccEEEEEcCcCCCcc
Confidence 0111 345555443 22211 11 22346899999999764 2345555555542 2224788889865433
Q ss_pred HHHHHhc
Q 010709 316 ALAQEYL 322 (503)
Q Consensus 316 ~~~~~~~ 322 (503)
-+.+.|.
T Consensus 146 w~~~~f~ 152 (396)
T TIGR01547 146 WVKKRFI 152 (396)
T ss_pred HHHHHHH
Confidence 3444443
No 302
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.66 E-value=0.071 Score=53.48 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=14.8
Q ss_pred CCeEEEccCCCchhHHh
Q 010709 159 RDLLGCAETGSGKTAAF 175 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~ 175 (503)
.+++|.||+|+|||...
T Consensus 56 ~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999854
No 303
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.66 E-value=0.14 Score=49.68 Aligned_cols=138 Identities=17% Similarity=0.174 Sum_probs=69.1
Q ss_pred CcHHHHHHHHHHh----cCC---CeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q 010709 144 PTSIQAQAMPVAL----SGR---DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (503)
Q Consensus 144 ~~~~Q~~~i~~i~----~~~---~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 216 (503)
.+|||...|..+. .|+ -.++.||.|.||+..+ ..+...+++..+.....-+ .| ..++.
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA-~~~A~~LlC~~~~~~~~Cg----~C----------~sC~~ 67 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALI-YALSRWLMCQQPQGHKSCG----HC----------RGCQL 67 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHH-HHHHHHHcCCCCCCCCCCC----CC----------HHHHH
Confidence 5677888887665 343 3789999999999865 4445555553221110000 11 11222
Q ss_pred Hhc-cCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHH
Q 010709 217 LSR-SLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ 295 (503)
Q Consensus 217 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~ 295 (503)
+.. .++++....-.++. ..|-|-..-.+.+.+.. .-.....+++|||+||+|-.. -.+.+.+++.
T Consensus 68 ~~~g~HPD~~~i~p~~~~------------~~I~idqiR~l~~~~~~-~~~~g~~kV~iI~~ae~m~~~-AaNaLLKtLE 133 (334)
T PRK07993 68 MQAGTHPDYYTLTPEKGK------------SSLGVDAVREVTEKLYE-HARLGGAKVVWLPDAALLTDA-AANALLKTLE 133 (334)
T ss_pred HHcCCCCCEEEEeccccc------------ccCCHHHHHHHHHHHhh-ccccCCceEEEEcchHhhCHH-HHHHHHHHhc
Confidence 221 22233322111110 01111111112222222 223467899999999988533 4566667777
Q ss_pred hCCCCCcEEEEEeeC
Q 010709 296 NLPDKHQTLLFSATM 310 (503)
Q Consensus 296 ~~~~~~q~i~~SAT~ 310 (503)
.-++...+|++|.-+
T Consensus 134 EPp~~t~fiL~t~~~ 148 (334)
T PRK07993 134 EPPENTWFFLACREP 148 (334)
T ss_pred CCCCCeEEEEEECCh
Confidence 755566555555443
No 304
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.65 E-value=0.064 Score=53.99 Aligned_cols=47 Identities=17% Similarity=0.284 Sum_probs=25.7
Q ss_pred CccEEEecchhHHhhCC-CHHHHHHHHHhC-CCCCcEEEEEeeCCHHHH
Q 010709 269 RVSFVILDEADRMLDMG-FEPQIREVMQNL-PDKHQTLLFSATMPVEIE 315 (503)
Q Consensus 269 ~~~~vViDEaH~l~~~~-~~~~~~~il~~~-~~~~q~i~~SAT~~~~~~ 315 (503)
++++|||||+|.+.+.. ....+..++..+ ....++|+.|...|..+.
T Consensus 199 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~ 247 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELP 247 (405)
T ss_pred hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHh
Confidence 36799999999876542 223344444433 234555554444444444
No 305
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.63 E-value=0.14 Score=51.71 Aligned_cols=16 Identities=25% Similarity=0.382 Sum_probs=14.2
Q ss_pred CeEEEccCCCchhHHh
Q 010709 160 DLLGCAETGSGKTAAF 175 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~ 175 (503)
++++.||+|+|||+.+
T Consensus 38 ~ilL~GppGtGKTtLA 53 (413)
T PRK13342 38 SMILWGPPGTGKTTLA 53 (413)
T ss_pred eEEEECCCCCCHHHHH
Confidence 6999999999999854
No 306
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.61 E-value=0.17 Score=43.76 Aligned_cols=53 Identities=23% Similarity=0.370 Sum_probs=41.0
Q ss_pred CCCccEEEecchhHHhhCC--CHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHH
Q 010709 267 LSRVSFVILDEADRMLDMG--FEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQ 319 (503)
Q Consensus 267 l~~~~~vViDEaH~l~~~~--~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~ 319 (503)
-..+++||+||+=..++.+ -...+..++...|+..-+|+..-.+|+.+.+.+.
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 4679999999999888776 3456778888888888777777777887776554
No 307
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.61 E-value=0.1 Score=53.78 Aligned_cols=73 Identities=19% Similarity=0.289 Sum_probs=62.0
Q ss_pred CcEEEEEcchhhHHHHHHHHHHC-CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEE
Q 010709 375 PLTIVFVERKTRCDEVSEALVAE-GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN 448 (503)
Q Consensus 375 ~~~lIF~~~~~~~~~l~~~L~~~-~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~ 448 (503)
+++||.+++...+.++++.|++. +..+..+||+++..+|.+.+....+|+.+|+|+|..+-. +.++++.+||.
T Consensus 26 ~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIV 99 (505)
T TIGR00595 26 KSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIV 99 (505)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEE
Confidence 46999999999999999999864 778999999999999999999999999999999964332 45667787774
No 308
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.60 E-value=0.092 Score=46.04 Aligned_cols=146 Identities=18% Similarity=0.148 Sum_probs=76.7
Q ss_pred cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHH
Q 010709 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA 236 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (503)
....+++..++|.|||.+++- +..+...+ |.+|+++.=.+--.. ..+...+. .+..+... ..+....
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g-~a~ra~g~-------G~~V~ivQFlKg~~~--~GE~~~l~-~l~~v~~~--~~g~~~~ 87 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFG-MALRAVGH-------GKKVGVVQFIKGAWS--TGERNLLE-FGGGVEFH--VMGTGFT 87 (191)
T ss_pred cCCeEEEECCCCCChHHHHHH-HHHHHHHC-------CCeEEEEEEecCCCc--cCHHHHHh-cCCCcEEE--ECCCCCc
Confidence 556799999999999998754 44444443 677888863331100 01111111 11112221 1111100
Q ss_pred HHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCC--HHHHHHHHHhCCCCCcEEEEEeeCCHHH
Q 010709 237 EQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGF--EPQIREVMQNLPDKHQTLLFSATMPVEI 314 (503)
Q Consensus 237 ~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~--~~~~~~il~~~~~~~q~i~~SAT~~~~~ 314 (503)
-. .....--.......++.... .+.-..+++||+||+=..++.++ ...+..++...|+..-+|+..-.+|+.+
T Consensus 88 ~~----~~~~~e~~~~~~~~~~~a~~-~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~L 162 (191)
T PRK05986 88 WE----TQDRERDIAAAREGWEEAKR-MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPREL 162 (191)
T ss_pred cc----CCCcHHHHHHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHH
Confidence 00 00000000011111222221 22346799999999998888774 4567778888777777777666677777
Q ss_pred HHHHHH
Q 010709 315 EALAQE 320 (503)
Q Consensus 315 ~~~~~~ 320 (503)
.+.+..
T Consensus 163 ie~ADl 168 (191)
T PRK05986 163 IEAADL 168 (191)
T ss_pred HHhCch
Confidence 765543
No 309
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.59 E-value=0.15 Score=52.41 Aligned_cols=17 Identities=29% Similarity=0.274 Sum_probs=14.8
Q ss_pred CeEEEccCCCchhHHhH
Q 010709 160 DLLGCAETGSGKTAAFT 176 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~~ 176 (503)
.++++||.|+|||+.+.
T Consensus 45 a~Lf~Gp~G~GKTT~Ar 61 (507)
T PRK06645 45 GYLLTGIRGVGKTTSAR 61 (507)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 59999999999998653
No 310
>PRK10867 signal recognition particle protein; Provisional
Probab=95.54 E-value=0.18 Score=50.65 Aligned_cols=16 Identities=25% Similarity=0.331 Sum_probs=13.9
Q ss_pred CeEEEccCCCchhHHh
Q 010709 160 DLLGCAETGSGKTAAF 175 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~ 175 (503)
-++++|++|+|||+..
T Consensus 102 vI~~vG~~GsGKTTta 117 (433)
T PRK10867 102 VIMMVGLQGAGKTTTA 117 (433)
T ss_pred EEEEECCCCCcHHHHH
Confidence 3889999999999865
No 311
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.53 E-value=0.14 Score=53.48 Aligned_cols=39 Identities=13% Similarity=0.232 Sum_probs=25.6
Q ss_pred CCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEE
Q 010709 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (503)
Q Consensus 268 ~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~S 307 (503)
.+++++||||+|+|... -...+.+++...++...+|+.+
T Consensus 117 gk~KV~IIDEVh~LS~~-A~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTH-SFNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHH-HHHHHHHHHhcCCCCcEEEEEE
Confidence 46889999999977543 2345666666655556555433
No 312
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.53 E-value=0.11 Score=54.61 Aligned_cols=40 Identities=13% Similarity=0.185 Sum_probs=26.8
Q ss_pred CCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEE
Q 010709 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (503)
Q Consensus 267 l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~S 307 (503)
+.+.++|||||+|.|... -.+.+.+.+...++...+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~-a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTA-AFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHH-HHHHHHHHHHhCCCCeEEEEEe
Confidence 567899999999987533 2344555566666666666654
No 313
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.52 E-value=0.2 Score=54.13 Aligned_cols=18 Identities=39% Similarity=0.399 Sum_probs=15.4
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
..++++.||+|+|||..+
T Consensus 207 ~~n~LLvGppGvGKT~la 224 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 457999999999999754
No 314
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.50 E-value=0.23 Score=47.71 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=30.3
Q ss_pred CCCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeC
Q 010709 266 SLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (503)
Q Consensus 266 ~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~ 310 (503)
....++++|||+||+|... -.+.+.+.+..-+++..+|+.|..+
T Consensus 105 ~~~~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~t~fiL~t~~~ 148 (319)
T PRK06090 105 QLNGYRLFVIEPADAMNES-ASNALLKTLEEPAPNCLFLLVTHNQ 148 (319)
T ss_pred ccCCceEEEecchhhhCHH-HHHHHHHHhcCCCCCeEEEEEECCh
Confidence 3467899999999988533 4566777777766666555555544
No 315
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.48 E-value=0.17 Score=48.91 Aligned_cols=41 Identities=17% Similarity=0.270 Sum_probs=27.7
Q ss_pred CCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEe
Q 010709 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSA 308 (503)
Q Consensus 267 l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SA 308 (503)
....+++|+|++|.|- ......+.+.+...+....+|++|-
T Consensus 111 ~~~~kV~iiEp~~~Ld-~~a~naLLk~LEep~~~~~~Ilvth 151 (325)
T PRK08699 111 RGGLRVILIHPAESMN-LQAANSLLKVLEEPPPQVVFLLVSH 151 (325)
T ss_pred cCCceEEEEechhhCC-HHHHHHHHHHHHhCcCCCEEEEEeC
Confidence 4678999999999763 3356667777777665554555443
No 316
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.45 E-value=0.18 Score=50.55 Aligned_cols=16 Identities=38% Similarity=0.409 Sum_probs=14.1
Q ss_pred CeEEEccCCCchhHHh
Q 010709 160 DLLGCAETGSGKTAAF 175 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~ 175 (503)
.++++|++|+|||+..
T Consensus 101 vi~~vG~~GsGKTTta 116 (428)
T TIGR00959 101 VILMVGLQGSGKTTTC 116 (428)
T ss_pred EEEEECCCCCcHHHHH
Confidence 3889999999999865
No 317
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.45 E-value=0.19 Score=46.05 Aligned_cols=53 Identities=13% Similarity=0.142 Sum_probs=31.6
Q ss_pred cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q 010709 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 218 (503)
.|.-+++.|++|+|||+..+ -++...... +.++++++.. +-..+..+.+..++
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~-~~~~~~~~~-------g~~~~yi~~e-~~~~~~~~~~~~~g 75 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQ-RLAYGFLQN-------GYSVSYVSTQ-LTTTEFIKQMMSLG 75 (230)
T ss_pred CCcEEEEECCCCCCHHHHHH-HHHHHHHhC-------CCcEEEEeCC-CCHHHHHHHHHHhC
Confidence 46679999999999998532 233333332 4567888743 33344444444443
No 318
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.43 E-value=0.039 Score=58.26 Aligned_cols=42 Identities=17% Similarity=0.369 Sum_probs=36.3
Q ss_pred ccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCC
Q 010709 270 VSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMP 311 (503)
Q Consensus 270 ~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~ 311 (503)
-=++|+|+.|.+.+......++.++++.|++..+++.|=+-|
T Consensus 130 pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 130 PLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred ceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 348999999998888788889999999999998888887654
No 319
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.42 E-value=0.13 Score=55.63 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=25.4
Q ss_pred CCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEE
Q 010709 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLF 306 (503)
Q Consensus 268 ~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~ 306 (503)
.+++++||||||+|... -...+.+++..-++...+|+.
T Consensus 118 gk~KViIIDEAh~LT~e-AqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRS-SFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCHH-HHHHHHHHHhccCCCeEEEEE
Confidence 46899999999987422 344556666665566655554
No 320
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.11 Score=51.89 Aligned_cols=29 Identities=21% Similarity=0.237 Sum_probs=20.6
Q ss_pred CCCeEEEccCCCchhHHhHHHHHHHHHhcCC
Q 010709 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTP 188 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~ 188 (503)
-+-+++.||+|+|||+. .-.+-.++.-+.
T Consensus 256 VKGiLLyGPPGTGKTLi--ARqIGkMLNAre 284 (744)
T KOG0741|consen 256 VKGILLYGPPGTGKTLI--ARQIGKMLNARE 284 (744)
T ss_pred eeeEEEECCCCCChhHH--HHHHHHHhcCCC
Confidence 35699999999999984 345555555443
No 321
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.40 E-value=0.13 Score=50.88 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=24.4
Q ss_pred CCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEE
Q 010709 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (503)
Q Consensus 267 l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~S 307 (503)
..+.+++||||+|.+.... ...+.+.+...++...+|+.+
T Consensus 117 ~~~~kviIIDEa~~l~~~a-~naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 117 KSRFKVYLIDEVHMLSRHS-FNALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred cCCceEEEEEChhhcCHHH-HHHHHHHHhcCCCCeEEEEEc
Confidence 3467899999999875432 233445555545555555543
No 322
>PF05729 NACHT: NACHT domain
Probab=95.39 E-value=0.16 Score=43.65 Aligned_cols=38 Identities=18% Similarity=0.359 Sum_probs=22.8
Q ss_pred EEEecchhHHhhCC-------CHHHHHHHHHh-CCCCCcEEEEEee
Q 010709 272 FVILDEADRMLDMG-------FEPQIREVMQN-LPDKHQTLLFSAT 309 (503)
Q Consensus 272 ~vViDEaH~l~~~~-------~~~~~~~il~~-~~~~~q~i~~SAT 309 (503)
++|||-+|.+.... +...+..++.. .++..++++.|.+
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~ 129 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRP 129 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcC
Confidence 49999999876532 22344455554 4556766665543
No 323
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.37 E-value=0.23 Score=47.91 Aligned_cols=43 Identities=12% Similarity=0.116 Sum_probs=29.3
Q ss_pred CCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeC
Q 010709 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (503)
Q Consensus 267 l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~ 310 (503)
....+++|||+||.|... -.+.+.+++..-++...+|+.|..+
T Consensus 105 ~g~~KV~iI~~a~~m~~~-AaNaLLKtLEEPp~~~~fiL~t~~~ 147 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEA-AANALLKTLEEPRPNTYFLLQADLS 147 (325)
T ss_pred cCCceEEEEechhhhCHH-HHHHHHHHhcCCCCCeEEEEEECCh
Confidence 457899999999988533 4566777777766666555555433
No 324
>CHL00181 cbbX CbbX; Provisional
Probab=95.35 E-value=0.039 Score=52.42 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=15.7
Q ss_pred CCCeEEEccCCCchhHHhH
Q 010709 158 GRDLLGCAETGSGKTAAFT 176 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~~ 176 (503)
+.++++.||+|+|||+.+-
T Consensus 59 ~~~ill~G~pGtGKT~lAr 77 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVAL 77 (287)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4468999999999998653
No 325
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.32 E-value=0.088 Score=54.92 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=26.3
Q ss_pred CCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEE
Q 010709 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (503)
Q Consensus 267 l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~S 307 (503)
..+++++||||+|.|... -.+.+.+.+...++...+|+.+
T Consensus 116 ~~~~KVvIIDEah~Lt~~-A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTA-GFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred cCCceEEEEECCCcCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 357899999999977543 3344556666656566555544
No 326
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.32 E-value=0.29 Score=48.66 Aligned_cols=44 Identities=20% Similarity=0.391 Sum_probs=27.5
Q ss_pred CCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCH
Q 010709 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPV 312 (503)
Q Consensus 267 l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~ 312 (503)
..+.+++||||+|+|... ..+.+.+.+..-++... +++.+|-+.
T Consensus 115 ~~~~kViiIDead~m~~~-aanaLLk~LEep~~~~~-fIL~a~~~~ 158 (394)
T PRK07940 115 TGRWRIVVIEDADRLTER-AANALLKAVEEPPPRTV-WLLCAPSPE 158 (394)
T ss_pred cCCcEEEEEechhhcCHH-HHHHHHHHhhcCCCCCe-EEEEECChH
Confidence 457889999999988543 33556666666555554 444444333
No 327
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.30 E-value=0.086 Score=50.04 Aligned_cols=17 Identities=29% Similarity=0.333 Sum_probs=14.5
Q ss_pred CCeEEEccCCCchhHHh
Q 010709 159 RDLLGCAETGSGKTAAF 175 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~ 175 (503)
+.++++||||+|||+..
T Consensus 195 ~vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTL 211 (282)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999864
No 328
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.30 E-value=0.1 Score=51.77 Aligned_cols=24 Identities=25% Similarity=0.348 Sum_probs=17.5
Q ss_pred CCeEEEccCCCchhHHhHHHHHHHH
Q 010709 159 RDLLGCAETGSGKTAAFTIPMIQHC 183 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~~lp~l~~~ 183 (503)
.+++|.||+|+|||... -.++..+
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 46999999999999754 3344433
No 329
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.29 E-value=0.14 Score=50.03 Aligned_cols=41 Identities=24% Similarity=0.263 Sum_probs=27.7
Q ss_pred CCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEe
Q 010709 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSA 308 (503)
Q Consensus 267 l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SA 308 (503)
...+++|||||||.|... -.+.+.+.+...+....+|++|.
T Consensus 139 ~g~~rVviIDeAd~l~~~-aanaLLk~LEEpp~~~~fiLit~ 179 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRN-AANAILKTLEEPPARALFILISH 179 (351)
T ss_pred cCCceEEEEEchhhcCHH-HHHHHHHHHhcCCCCceEEEEEC
Confidence 457899999999987433 34556667776555565566653
No 330
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.29 E-value=0.16 Score=52.63 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=26.0
Q ss_pred CCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEE
Q 010709 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (503)
Q Consensus 267 l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~S 307 (503)
..+++++||||+|+|.... .+.+.+.+...++...+|+.+
T Consensus 117 ~~~~kVvIIDEad~ls~~a-~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHH-HHHHHHHHhCCCCCEEEEEEe
Confidence 4568999999999875432 334555566655566555554
No 331
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.28 E-value=0.093 Score=53.21 Aligned_cols=53 Identities=25% Similarity=0.289 Sum_probs=33.5
Q ss_pred cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q 010709 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 218 (503)
.|.-+++.|++|+|||+..+. +...... .+.+++|+.- .+-..|+....+.++
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq-~a~~~a~-------~g~~vlYvs~-Ees~~qi~~ra~rlg 131 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQ-VAARLAA-------AGGKVLYVSG-EESASQIKLRAERLG 131 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHH-HHHHHHh-------cCCeEEEEEc-cccHHHHHHHHHHcC
Confidence 345689999999999984422 2223222 1456888874 345567766666654
No 332
>PRK04195 replication factor C large subunit; Provisional
Probab=95.24 E-value=0.09 Score=54.16 Aligned_cols=18 Identities=33% Similarity=0.372 Sum_probs=15.2
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
.+.+++.||+|+|||..+
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 356999999999999754
No 333
>PHA00729 NTP-binding motif containing protein
Probab=95.24 E-value=0.1 Score=47.10 Aligned_cols=75 Identities=12% Similarity=0.213 Sum_probs=38.2
Q ss_pred CcEEEECcHHHHHHHHcCCCCCCCccEEEecchhH-HhhCCCH----HHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHH
Q 010709 246 VSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR-MLDMGFE----PQIREVMQNLPDKHQTLLFSATMPVEIEALAQE 320 (503)
Q Consensus 246 ~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~-l~~~~~~----~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~ 320 (503)
...++.+.+.+.+.+....-...+++++||||+-- +....+. ..+..+...+....+++.+...-+.++...++.
T Consensus 59 ~~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 59 QNSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred CcEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 34556666666665543211223467899999421 1111111 112233333344456777776666676666655
No 334
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.22 E-value=0.23 Score=48.93 Aligned_cols=44 Identities=25% Similarity=0.277 Sum_probs=28.2
Q ss_pred CCCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeC
Q 010709 266 SLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (503)
Q Consensus 266 ~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~ 310 (503)
.....++|||||+|+|-. .-.+.+.+.+...++...+|++|..+
T Consensus 138 ~~~~~kVviIDead~m~~-~aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 138 AEGGWRVVIVDTADEMNA-NAANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred ccCCCEEEEEechHhcCH-HHHHHHHHHHhcCCCCeEEEEEECCc
Confidence 345788999999997742 23445666666655555555555444
No 335
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.22 E-value=0.1 Score=50.06 Aligned_cols=17 Identities=24% Similarity=0.259 Sum_probs=14.7
Q ss_pred CCCeEEEccCCCchhHH
Q 010709 158 GRDLLGCAETGSGKTAA 174 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~ 174 (503)
++.+++.|++|+|||..
T Consensus 156 ~~gl~L~G~~G~GKThL 172 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYL 172 (306)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 45799999999999964
No 336
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.20 E-value=0.26 Score=50.25 Aligned_cols=40 Identities=13% Similarity=0.179 Sum_probs=24.9
Q ss_pred CCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEE
Q 010709 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (503)
Q Consensus 267 l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~S 307 (503)
..+++++||||+|.+.... .+.+.+.+..-++...+|+.+
T Consensus 114 ~~~~KVvIIDEah~Ls~~A-~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSA-FNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred cCCceEEEEeChHhCCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 4578999999999775432 334555555555555444433
No 337
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.20 E-value=0.43 Score=51.91 Aligned_cols=18 Identities=39% Similarity=0.374 Sum_probs=15.3
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
..++++.||+|+|||..+
T Consensus 203 ~~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CCceEEECCCCCCHHHHH
Confidence 357999999999999754
No 338
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.19 E-value=0.086 Score=48.68 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=34.3
Q ss_pred cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q 010709 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 218 (503)
.|..++|.|++|+|||+..+-.+...+ .. +.++++++ +.+-..|+.+.+..++
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~-~~-------ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL-QM-------GEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-Hc-------CCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 456799999999999985543333332 22 55678887 3445556666666654
No 339
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.19 E-value=0.075 Score=51.19 Aligned_cols=68 Identities=25% Similarity=0.258 Sum_probs=42.9
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHH-hcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHH
Q 010709 131 SIMKDIEFHEYTRPTSIQAQAMPVA-LSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (503)
Q Consensus 131 ~l~~~l~~~~~~~~~~~Q~~~i~~i-~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~L 206 (503)
.-+..+...|. +.+.|.+.+..+ ..+++++|+|+||+|||+. +-.++..+... ....+++++-.+.|+
T Consensus 122 ~tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~-----~~~~rivtIEd~~El 190 (319)
T PRK13894 122 FTLDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQ-----DPTERVFIIEDTGEI 190 (319)
T ss_pred CCHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhc-----CCCceEEEEcCCCcc
Confidence 33455555554 456677777654 4667899999999999974 34444443221 123467777777776
No 340
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.16 E-value=0.088 Score=53.11 Aligned_cols=16 Identities=25% Similarity=0.247 Sum_probs=14.1
Q ss_pred eEEEccCCCchhHHhH
Q 010709 161 LLGCAETGSGKTAAFT 176 (503)
Q Consensus 161 vii~~~TGsGKTl~~~ 176 (503)
.+++||.|+|||..+.
T Consensus 43 ~Lf~GP~GtGKTTlAr 58 (484)
T PRK14956 43 YIFFGPRGVGKTTIAR 58 (484)
T ss_pred EEEECCCCCCHHHHHH
Confidence 7999999999998653
No 341
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=95.13 E-value=0.05 Score=56.74 Aligned_cols=126 Identities=16% Similarity=0.197 Sum_probs=75.9
Q ss_pred CCcHHHHHHHHHHhcC--CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHH-HHHHHHhc
Q 010709 143 RPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIE-KEVKALSR 219 (503)
Q Consensus 143 ~~~~~Q~~~i~~i~~~--~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~-~~~~~~~~ 219 (503)
..+|+|.+.+.++-.. +.|+++.++-+|||.+. +.++.+.+.+. ...+|++.||.++|..+. .++..+..
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~-~n~~g~~i~~~------P~~~l~v~Pt~~~a~~~~~~rl~Pmi~ 88 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELL-LNWIGYSIDQD------PGPMLYVQPTDDAAKDFSKERLDPMIR 88 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHH-HhhceEEEEeC------CCCEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 5688899999887654 45999999999999854 44555544442 355899999999999876 66777665
Q ss_pred cCCCceEEEEE---CCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHh
Q 010709 220 SLDSFKTAIVV---GGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRML 282 (503)
Q Consensus 220 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~ 282 (503)
..+.++-.+.- ...........+. +..+.++....- ..+.-..+++|++||++..-
T Consensus 89 ~sp~l~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S~------~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 89 ASPVLRRKLSPSKSRDSGNTILYKRFP-GGFLYLVGANSP------SNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred hCHHHHHHhCchhhcccCCchhheecC-CCEEEEEeCCCC------cccccCCcCEEEEechhhcc
Confidence 54333211111 0000011111122 333444432211 12334568899999999874
No 342
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.12 E-value=0.08 Score=56.47 Aligned_cols=74 Identities=15% Similarity=0.239 Sum_probs=63.7
Q ss_pred CcEEEEEcchhhHHHHHHHHHHC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-ccccCCCCCCCCEEEE
Q 010709 375 PLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VASRGLDVMGVAHVVN 448 (503)
Q Consensus 375 ~~~lIF~~~~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~~Gldip~v~~VI~ 448 (503)
.+++|.++++.-|.++++.+++. |+.+..+||+++..+|..+++...+|+..|+|+|. .+...+.+.++.+||.
T Consensus 285 ~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 285 YQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred CcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEEE
Confidence 46999999999999988877653 78999999999999999999999999999999995 4555677888888774
No 343
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.08 E-value=0.47 Score=48.42 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=13.9
Q ss_pred eEEEccCCCchhHHhH
Q 010709 161 LLGCAETGSGKTAAFT 176 (503)
Q Consensus 161 vii~~~TGsGKTl~~~ 176 (503)
++++||+|+|||+.+.
T Consensus 39 ~Lf~GPpGtGKTTlA~ 54 (472)
T PRK14962 39 YIFAGPRGTGKTTVAR 54 (472)
T ss_pred EEEECCCCCCHHHHHH
Confidence 6999999999998653
No 344
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.05 E-value=0.41 Score=47.80 Aligned_cols=18 Identities=33% Similarity=0.287 Sum_probs=15.1
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
|+.+.++||||+|||+..
T Consensus 191 g~vi~lvGpnG~GKTTtl 208 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTT 208 (420)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 445899999999999854
No 345
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.05 E-value=0.36 Score=51.96 Aligned_cols=40 Identities=18% Similarity=0.229 Sum_probs=24.0
Q ss_pred CccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHH
Q 010709 269 RVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVE 313 (503)
Q Consensus 269 ~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~ 313 (503)
+..++||||+|++... ....++..+. ..++++++||-++.
T Consensus 109 ~~~IL~IDEIh~Ln~~----qQdaLL~~lE-~g~IiLI~aTTenp 148 (725)
T PRK13341 109 KRTILFIDEVHRFNKA----QQDALLPWVE-NGTITLIGATTENP 148 (725)
T ss_pred CceEEEEeChhhCCHH----HHHHHHHHhc-CceEEEEEecCCCh
Confidence 4568999999986422 2233333333 34577777775443
No 346
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.02 E-value=0.14 Score=50.49 Aligned_cols=48 Identities=15% Similarity=0.270 Sum_probs=33.3
Q ss_pred CccEEEecchhHHhhC-CCHHHHHHHHHhCCC-CCcEEEEEeeCCHHHHH
Q 010709 269 RVSFVILDEADRMLDM-GFEPQIREVMQNLPD-KHQTLLFSATMPVEIEA 316 (503)
Q Consensus 269 ~~~~vViDEaH~l~~~-~~~~~~~~il~~~~~-~~q~i~~SAT~~~~~~~ 316 (503)
++++++||+++.+.+. .....+-.++..+.. ..|+|+.|..+|.++..
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~ 224 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNG 224 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhcc
Confidence 6889999999988765 345555555555543 34788888777777653
No 347
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.97 E-value=0.11 Score=49.81 Aligned_cols=66 Identities=23% Similarity=0.283 Sum_probs=39.9
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHh-cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHH
Q 010709 133 MKDIEFHEYTRPTSIQAQAMPVAL-SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (503)
Q Consensus 133 ~~~l~~~~~~~~~~~Q~~~i~~i~-~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~L 206 (503)
+..+...|. +.+.|.+.+..+. .+++++|+|+||||||+.. -.++..+... ....+++++=...|+
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~-----~~~~ri~tiEd~~El 174 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKN-----DPTDRVVIIEDTREL 174 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhcc-----CCCceEEEECCchhh
Confidence 444444443 3445555555544 5678999999999999843 3344443321 123567777777776
No 348
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.94 E-value=0.088 Score=50.04 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=15.5
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
+.++++.||+|+|||+.+
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 457999999999999865
No 349
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=94.92 E-value=0.21 Score=51.96 Aligned_cols=133 Identities=20% Similarity=0.214 Sum_probs=79.8
Q ss_pred CCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccC-CCceEEEEECCccHH
Q 010709 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL-DSFKTAIVVGGTNIA 236 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 236 (503)
.+-.++..|=-.|||.... +++..++.. ..|.++++++|.+..++.+.+++....... ....+..+.| ...
T Consensus 254 qk~tVflVPRR~GKTwivv-~iI~~ll~s-----~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I- 325 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLV-PLIALALAT-----FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI- 325 (738)
T ss_pred ccceEEEecccCCchhhHH-HHHHHHHHh-----CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE-
Confidence 4558889999999998653 666655532 136889999999999999999988876432 1111212222 110
Q ss_pred HHHHHhhCC--CcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhC-CCCCcEEEEEeeC
Q 010709 237 EQRSELRGG--VSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATM 310 (503)
Q Consensus 237 ~~~~~~~~~--~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~-~~~~q~i~~SAT~ 310 (503)
.-.+.++ ..|.+++. -..+...-+.++++|||||+.+-. ..+..++-.+ ..+.++|.+|.|-
T Consensus 326 --~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~----~al~~ilp~l~~~n~k~I~ISS~N 390 (738)
T PHA03368 326 --SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRP----DAVQTIMGFLNQTNCKIIFVSSTN 390 (738)
T ss_pred --EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCH----HHHHHHHHHHhccCccEEEEecCC
Confidence 0011112 24555531 112233445799999999997653 3344444322 2377889998884
No 350
>PRK14873 primosome assembly protein PriA; Provisional
Probab=94.91 E-value=0.16 Score=53.89 Aligned_cols=93 Identities=23% Similarity=0.164 Sum_probs=72.3
Q ss_pred hhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHC-C-CeEEEEcCCCCHHHHHHHHHHHhcCCCcE
Q 010709 350 NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-G-LHAVALHGGRNQSDRESALRDFRNGSTNI 427 (503)
Q Consensus 350 ~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~-~-~~v~~lh~~~~~~~r~~~~~~f~~g~~~v 427 (503)
..|....++++...... ++.+||.++......++.+.|+.. | -.+..+|++++..+|.+.+....+|+.+|
T Consensus 171 SGKTevyl~~i~~~l~~-------Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~I 243 (665)
T PRK14873 171 EDWARRLAAAAAATLRA-------GRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARV 243 (665)
T ss_pred CcHHHHHHHHHHHHHHc-------CCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcE
Confidence 45666666666554432 335999999999999999999865 4 67999999999999999999999999999
Q ss_pred EEEccccccCCCCCCCCEEEEcc
Q 010709 428 LVATDVASRGLDVMGVAHVVNLD 450 (503)
Q Consensus 428 LvaT~~~~~Gldip~v~~VI~~~ 450 (503)
+|.|..+- =.-+++...||..+
T Consensus 244 ViGtRSAv-FaP~~~LgLIIvdE 265 (665)
T PRK14873 244 VVGTRSAV-FAPVEDLGLVAIWD 265 (665)
T ss_pred EEEcceeE-EeccCCCCEEEEEc
Confidence 99996543 23555677777533
No 351
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.89 E-value=0.12 Score=54.16 Aligned_cols=40 Identities=15% Similarity=0.198 Sum_probs=26.1
Q ss_pred CCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEE
Q 010709 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (503)
Q Consensus 267 l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~S 307 (503)
..+++++||||+|+|... -.+.+.+.+...++...+|+.+
T Consensus 117 ~~~~KVvIIdev~~Lt~~-a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTN-AFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred cCCceEEEEEChhhCCHH-HHHHHHHHHHcCCCCeEEEEEe
Confidence 457899999999977533 2345666666655555555444
No 352
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.89 E-value=0.47 Score=52.55 Aligned_cols=17 Identities=35% Similarity=0.399 Sum_probs=14.8
Q ss_pred CCeEEEccCCCchhHHh
Q 010709 159 RDLLGCAETGSGKTAAF 175 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~ 175 (503)
++.++.||+|+|||...
T Consensus 195 ~n~lL~G~pGvGKT~l~ 211 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIV 211 (852)
T ss_pred CceEEEcCCCCCHHHHH
Confidence 57999999999999754
No 353
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.88 E-value=0.38 Score=49.82 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=26.4
Q ss_pred CCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEE
Q 010709 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (503)
Q Consensus 267 l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~S 307 (503)
..+.+++||||+|+|... -...+.+.+...++...+|+.+
T Consensus 117 ~g~~kViIIDEa~~ls~~-a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQ-SFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHH-HHHHHHHHHhcCCCCceEEEEE
Confidence 456789999999987543 2345566666655566555544
No 354
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.85 E-value=0.16 Score=50.00 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=32.7
Q ss_pred cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q 010709 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 218 (503)
.|.-+++.|++|+|||+..+ -+....... +.+++|+.-. +-..|+..+...++
T Consensus 81 ~GslvLI~G~pG~GKStLll-q~a~~~a~~-------g~~VlYvs~E-Es~~qi~~Ra~rlg 133 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLL-QVAARLAKR-------GGKVLYVSGE-ESPEQIKLRADRLG 133 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHH-HHHHHHHhc-------CCeEEEEECC-cCHHHHHHHHHHcC
Confidence 34569999999999998442 223332221 4568887654 34556666665554
No 355
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.82 E-value=0.072 Score=46.70 Aligned_cols=49 Identities=18% Similarity=0.373 Sum_probs=27.6
Q ss_pred HHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHH
Q 010709 153 PVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI 210 (503)
Q Consensus 153 ~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~ 210 (503)
.++.+++++++.|++|+|||..+ ..+...+... +..++++ ...+|...+
T Consensus 42 ~~~~~~~~l~l~G~~G~GKThLa-~ai~~~~~~~-------g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 42 EFIENGENLILYGPPGTGKTHLA-VAIANEAIRK-------GYSVLFI-TASDLLDEL 90 (178)
T ss_dssp -S-SC--EEEEEESTTSSHHHHH-HHHHHHHHHT-------T--EEEE-EHHHHHHHH
T ss_pred CCcccCeEEEEEhhHhHHHHHHH-HHHHHHhccC-------CcceeEe-ecCceeccc
Confidence 33446778999999999999754 3344444443 4455554 444555543
No 356
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.82 E-value=0.23 Score=50.32 Aligned_cols=91 Identities=15% Similarity=0.251 Sum_probs=72.2
Q ss_pred CCCcEEEEEcchhhHHHHHHHHHHC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEc-----cccccC-CCCCC
Q 010709 373 PFPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVAT-----DVASRG-LDVMG 442 (503)
Q Consensus 373 ~~~~~lIF~~~~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~~~G-ldip~ 442 (503)
..+.+||.+++++.|.++.+.+.+. ++...+++|+.+...|..-+++ -+.|+||| +.++.| +|+..
T Consensus 164 ~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~----gvdiviaTPGRl~d~le~g~~~l~~ 239 (519)
T KOG0331|consen 164 DGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLER----GVDVVIATPGRLIDLLEEGSLNLSR 239 (519)
T ss_pred CCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhc----CCcEEEeCChHHHHHHHcCCccccc
Confidence 3456999999999999999988765 4568999999998877776653 58999999 456665 47788
Q ss_pred CCEEE--------EccCCCChhHHHHhhCccee
Q 010709 443 VAHVV--------NLDLPKVLLAASESLCTTSF 467 (503)
Q Consensus 443 v~~VI--------~~~~p~s~~~~~Qr~GR~gR 467 (503)
|.++| +.++-..+...+++++|.-|
T Consensus 240 v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r 272 (519)
T KOG0331|consen 240 VTYLVLDEADRMLDMGFEPQIRKILSQIPRPDR 272 (519)
T ss_pred eeEEEeccHHhhhccccHHHHHHHHHhcCCCcc
Confidence 88887 35556677888999999888
No 357
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.81 E-value=0.18 Score=50.68 Aligned_cols=41 Identities=22% Similarity=0.257 Sum_probs=30.8
Q ss_pred CcHHHHHHHHHHhcCCC--eEEEccCCCchhHHhHHHHHHHHHh
Q 010709 144 PTSIQAQAMPVALSGRD--LLGCAETGSGKTAAFTIPMIQHCVA 185 (503)
Q Consensus 144 ~~~~Q~~~i~~i~~~~~--vii~~~TGsGKTl~~~lp~l~~~~~ 185 (503)
..+.|.+.+..+++... +++.||||||||+.. ..++..+..
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTL-Y~~L~~ln~ 284 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTL-YAALSELNT 284 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHH-HHHHHHhcC
Confidence 36778888888887665 899999999999863 555655443
No 358
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.78 E-value=0.39 Score=45.25 Aligned_cols=32 Identities=28% Similarity=0.317 Sum_probs=21.5
Q ss_pred CcHHHHHHHHHHh----cCC-CeEEEccCCCchhHHh
Q 010709 144 PTSIQAQAMPVAL----SGR-DLLGCAETGSGKTAAF 175 (503)
Q Consensus 144 ~~~~Q~~~i~~i~----~~~-~vii~~~TGsGKTl~~ 175 (503)
+++.+.+++..+. .+. .+++.||+|+|||+..
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 4444555655543 333 4899999999999854
No 359
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=94.78 E-value=0.11 Score=55.25 Aligned_cols=97 Identities=19% Similarity=0.259 Sum_probs=76.9
Q ss_pred EEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHC-CCeEEEEcCCCCHHHHHHHHHHHhc
Q 010709 344 LEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-GLHAVALHGGRNQSDRESALRDFRN 422 (503)
Q Consensus 344 ~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~-~~~v~~lh~~~~~~~r~~~~~~f~~ 422 (503)
+..+....|....++.+.+....+ +.+||.++-+....++.+.|+.. |.++..+||++++.+|...+.+..+
T Consensus 222 l~GvTGSGKTEvYl~~i~~~L~~G-------kqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~ 294 (730)
T COG1198 222 LDGVTGSGKTEVYLEAIAKVLAQG-------KQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARR 294 (730)
T ss_pred EeCCCCCcHHHHHHHHHHHHHHcC-------CEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhc
Confidence 344566778877777777665443 35999999999999998888765 8899999999999999999999999
Q ss_pred CCCcEEEEccccccCCCCCCCCEEEE
Q 010709 423 GSTNILVATDVASRGLDVMGVAHVVN 448 (503)
Q Consensus 423 g~~~vLvaT~~~~~Gldip~v~~VI~ 448 (503)
|+.+|+|.|..+- =.-++++..||.
T Consensus 295 G~~~vVIGtRSAl-F~Pf~~LGLIIv 319 (730)
T COG1198 295 GEARVVIGTRSAL-FLPFKNLGLIIV 319 (730)
T ss_pred CCceEEEEechhh-cCchhhccEEEE
Confidence 9999999996432 234556666664
No 360
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=94.76 E-value=0.22 Score=55.04 Aligned_cols=74 Identities=14% Similarity=0.228 Sum_probs=64.3
Q ss_pred CcEEEEEcchhhHHHHHHHHHHC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-ccccCCCCCCCCEEEE
Q 010709 375 PLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VASRGLDVMGVAHVVN 448 (503)
Q Consensus 375 ~~~lIF~~~~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~~Gldip~v~~VI~ 448 (503)
.+++|.++++..|.+.++.+++. ++.+..++|..+..++.++++.+.+|+.+|+|+|. ++...+.+.++.+||.
T Consensus 501 ~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 501 KQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEe
Confidence 46999999999999999888763 67888999999999999999999999999999995 5556788888888774
No 361
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.68 E-value=0.79 Score=41.97 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=17.3
Q ss_pred CeEEEccCCCchhHHhHHHHHHH
Q 010709 160 DLLGCAETGSGKTAAFTIPMIQH 182 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~~lp~l~~ 182 (503)
=+|++|+|||||++.. ..++.+
T Consensus 129 LviiVGaTGSGKSTtm-AaMi~y 150 (375)
T COG5008 129 LVIIVGATGSGKSTTM-AAMIGY 150 (375)
T ss_pred eEEEECCCCCCchhhH-HHHhcc
Confidence 3999999999999864 555554
No 362
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=0.76 Score=45.26 Aligned_cols=30 Identities=23% Similarity=0.339 Sum_probs=20.2
Q ss_pred CCCccEEEecchhHHhhCCCHHHHHHHHHhC
Q 010709 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNL 297 (503)
Q Consensus 267 l~~~~~vViDEaH~l~~~~~~~~~~~il~~~ 297 (503)
....-+||+||++.|.+..- ..+..+++..
T Consensus 121 ~~~~~IvvLDEid~L~~~~~-~~LY~L~r~~ 150 (366)
T COG1474 121 KGKTVIVILDEVDALVDKDG-EVLYSLLRAP 150 (366)
T ss_pred cCCeEEEEEcchhhhccccc-hHHHHHHhhc
Confidence 34566899999999987743 4455555443
No 363
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=94.68 E-value=0.53 Score=41.65 Aligned_cols=38 Identities=21% Similarity=0.325 Sum_probs=22.7
Q ss_pred CCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEE
Q 010709 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLL 305 (503)
Q Consensus 267 l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~ 305 (503)
....++|||||+|++... ....+.+.+...++...+|+
T Consensus 94 ~~~~kviiide~~~l~~~-~~~~Ll~~le~~~~~~~~il 131 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEA-AANALLKTLEEPPPNTLFIL 131 (188)
T ss_pred cCCeEEEEEechhhhCHH-HHHHHHHHhcCCCCCeEEEE
Confidence 467889999999987532 23334445544343443333
No 364
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.67 E-value=0.31 Score=51.49 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=23.5
Q ss_pred CCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEee
Q 010709 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 309 (503)
Q Consensus 267 l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 309 (503)
+.+.++|||||+|.|... -...+.+.+...++.. ++++.++
T Consensus 118 ~~~~kVvIIDEa~~L~~~-a~naLLk~LEepp~~t-v~Il~t~ 158 (585)
T PRK14950 118 LARYKVYIIDEVHMLSTA-AFNALLKTLEEPPPHA-IFILATT 158 (585)
T ss_pred cCCeEEEEEeChHhCCHH-HHHHHHHHHhcCCCCe-EEEEEeC
Confidence 457899999999977532 2233444444444444 3334333
No 365
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.67 E-value=0.053 Score=52.70 Aligned_cols=45 Identities=27% Similarity=0.330 Sum_probs=29.2
Q ss_pred HHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHH
Q 010709 154 VALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELA 207 (503)
Q Consensus 154 ~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La 207 (503)
++..+++++|+|+||||||+.. -.++..+ . ...+++.+=.+.||.
T Consensus 158 ~v~~~~nilI~G~tGSGKTTll-~aLl~~i-~-------~~~rivtiEd~~El~ 202 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTMS-KTLISAI-P-------PQERLITIEDTLELV 202 (344)
T ss_pred HHHcCCeEEEECCCCccHHHHH-HHHHccc-C-------CCCCEEEECCCcccc
Confidence 3446789999999999999842 3333322 1 134567766777663
No 366
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.67 E-value=0.76 Score=44.36 Aligned_cols=55 Identities=15% Similarity=0.292 Sum_probs=30.6
Q ss_pred CCccEEEecchhHHhhC-CCHHHHHHHHHhC------CCCCcEEEEEeeCCHHHHHHHHHhc
Q 010709 268 SRVSFVILDEADRMLDM-GFEPQIREVMQNL------PDKHQTLLFSATMPVEIEALAQEYL 322 (503)
Q Consensus 268 ~~~~~vViDEaH~l~~~-~~~~~~~~il~~~------~~~~q~i~~SAT~~~~~~~~~~~~~ 322 (503)
.++++||||=+-++-.. .....+.++.+.. .+...++.++||...+.-..+..|.
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~ 256 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFH 256 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHH
Confidence 56788999888754322 1223344443321 2334578889997655444455553
No 367
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=0.4 Score=45.83 Aligned_cols=17 Identities=29% Similarity=0.384 Sum_probs=14.7
Q ss_pred CCeEEEccCCCchhHHh
Q 010709 159 RDLLGCAETGSGKTAAF 175 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~ 175 (503)
+-|++.||+|+|||+.+
T Consensus 186 KGVLLYGPPGTGKTLLA 202 (406)
T COG1222 186 KGVLLYGPPGTGKTLLA 202 (406)
T ss_pred CceEeeCCCCCcHHHHH
Confidence 56999999999999844
No 368
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.64 E-value=0.25 Score=51.89 Aligned_cols=40 Identities=13% Similarity=0.252 Sum_probs=23.8
Q ss_pred CCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEE
Q 010709 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (503)
Q Consensus 267 l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~S 307 (503)
..+++++||||+|+|.... .+.+.+.+...+....+|+.+
T Consensus 122 ~g~~KV~IIDEvh~Ls~~a-~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 122 QGRFKVFMIDEVHMLTNTA-FNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred cCCceEEEEEChhhCCHHH-HHHHHHhcccCCCCeEEEEEE
Confidence 3568999999999875432 223444444444455454443
No 369
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.61 E-value=0.17 Score=52.00 Aligned_cols=24 Identities=21% Similarity=0.157 Sum_probs=17.2
Q ss_pred eEEEccCCCchhHHhHHHHHHHHHh
Q 010709 161 LLGCAETGSGKTAAFTIPMIQHCVA 185 (503)
Q Consensus 161 vii~~~TGsGKTl~~~lp~l~~~~~ 185 (503)
++++||.|+|||+.+. .+...+..
T Consensus 39 ~Lf~GppGtGKTTlA~-~lA~~l~c 62 (504)
T PRK14963 39 YLFSGPRGVGKTTTAR-LIAMAVNC 62 (504)
T ss_pred EEEECCCCCCHHHHHH-HHHHHHhc
Confidence 5999999999998753 34444433
No 370
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=94.59 E-value=0.48 Score=40.95 Aligned_cols=54 Identities=28% Similarity=0.476 Sum_probs=35.4
Q ss_pred CCCCccEEEecchhHHhhCCC--HHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHH
Q 010709 266 SLSRVSFVILDEADRMLDMGF--EPQIREVMQNLPDKHQTLLFSATMPVEIEALAQ 319 (503)
Q Consensus 266 ~l~~~~~vViDEaH~l~~~~~--~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~ 319 (503)
.-..+++||+||+-..++.++ ...+..++...++..-+|+.--.+|+.+.+.+.
T Consensus 93 ~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~AD 148 (172)
T PF02572_consen 93 SSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAAD 148 (172)
T ss_dssp T-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-S
T ss_pred hCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCC
Confidence 346799999999998888774 456778888777778777776677777766544
No 371
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=94.58 E-value=0.1 Score=51.27 Aligned_cols=28 Identities=39% Similarity=0.540 Sum_probs=20.2
Q ss_pred cCCCeEEEccCCCchhHHhHHHHHHHHHh
Q 010709 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVA 185 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~~lp~l~~~~~ 185 (503)
.+..++|+||||||||+.. ..++.++..
T Consensus 148 ~~GlilI~G~TGSGKTT~l-~al~~~i~~ 175 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLA-ASIYQHCGE 175 (372)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHHh
Confidence 3456999999999999853 455555543
No 372
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=94.53 E-value=0.028 Score=63.89 Aligned_cols=92 Identities=23% Similarity=0.256 Sum_probs=76.5
Q ss_pred EEEEEcchhhHHHHHHHHHHCC-CeEEEEcCCCC-----------HHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCC
Q 010709 377 TIVFVERKTRCDEVSEALVAEG-LHAVALHGGRN-----------QSDRESALRDFRNGSTNILVATDVASRGLDVMGVA 444 (503)
Q Consensus 377 ~lIF~~~~~~~~~l~~~L~~~~-~~v~~lh~~~~-----------~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~ 444 (503)
.++|++.+..+..+.+.++... ..+..+.|.+. +..+.+++..|.....++|++|.++..|+|++.++
T Consensus 295 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~~ 374 (1606)
T KOG0701|consen 295 GIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKCN 374 (1606)
T ss_pred heeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhhh
Confidence 6999999999988888887652 23333444333 23478899999999999999999999999999999
Q ss_pred EEEEccCCCChhHHHHhhCcceee
Q 010709 445 HVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 445 ~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
.|+.++.|.....|+|+.||+-+.
T Consensus 375 ~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 375 LVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred hheeccCcchHHHHHHhhcccccc
Confidence 999999999999999999997663
No 373
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.49 E-value=0.11 Score=50.97 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=19.0
Q ss_pred cCCCeEEEccCCCchhHHhHHHHHHHH
Q 010709 157 SGRDLLGCAETGSGKTAAFTIPMIQHC 183 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~~lp~l~~~ 183 (503)
.+.-++|+||||||||+.. ..++.++
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 4566999999999999853 3344444
No 374
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.48 E-value=0.11 Score=51.40 Aligned_cols=130 Identities=14% Similarity=0.020 Sum_probs=71.8
Q ss_pred cHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccC---
Q 010709 145 TSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL--- 221 (503)
Q Consensus 145 ~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~--- 221 (503)
...|..+.-..-.|+- .|.|=.|||||... ++-...+.. .+..-++++.+=|+.|+.++...+.+++-..
T Consensus 164 D~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~L--a~Kaa~lh~----knPd~~I~~Tfftk~L~s~~r~lv~~F~f~~~e~ 236 (660)
T COG3972 164 DTDQTKAAFQSGFGKQ-RIRGLAGSGKTELL--AHKAAELHS----KNPDSRIAFTFFTKILASTMRTLVPEFFFMRVEK 236 (660)
T ss_pred cchhheeeeecCCchh-hhhcccCCCchhHH--HHHHHHHhc----CCCCceEEEEeehHHHHHHHHHHHHHHHHHHhhc
Confidence 3346665544444544 56788899999743 222222222 1235679999999999999999888876321
Q ss_pred ----CCceEEEEECCccHHHHHH---HhhCCCcEEEECc----HHHHHHHHcCCCCCCCccEEEecchhHH
Q 010709 222 ----DSFKTAIVVGGTNIAEQRS---ELRGGVSIVVATP----GRFLDHLQQGNTSLSRVSFVILDEADRM 281 (503)
Q Consensus 222 ----~~~~~~~~~~~~~~~~~~~---~~~~~~~Ilv~Tp----~~l~~~l~~~~~~l~~~~~vViDEaH~l 281 (503)
+.+-+..-.||........ .......+-++-- ..++..+.+..-...-+++|.|||++-+
T Consensus 237 ~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~~~~~~~yD~ilIDE~QDF 307 (660)
T COG3972 237 QPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIADINNKKAYDYILIDESQDF 307 (660)
T ss_pred CCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHHhhhccccccEEEecccccC
Confidence 1122333344544332222 2222222222211 1223333333334677999999999853
No 375
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.46 E-value=0.25 Score=51.69 Aligned_cols=42 Identities=12% Similarity=0.199 Sum_probs=23.6
Q ss_pred CCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeC
Q 010709 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (503)
Q Consensus 267 l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~ 310 (503)
..+++++||||+|.|.... ...+.+.+...+... ++++.+|-
T Consensus 117 ~~~~kViIIDE~~~Lt~~a-~naLLKtLEepp~~~-ifIlatt~ 158 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTGA-FNALLKTLEEPPAHV-IFILATTE 158 (559)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHhcCCCCCe-EEEEEeCC
Confidence 4578999999999775322 223444444434344 33333443
No 376
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.44 E-value=0.15 Score=46.65 Aligned_cols=54 Identities=20% Similarity=0.206 Sum_probs=31.4
Q ss_pred cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q 010709 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 218 (503)
.|..++|.|++|+|||+-.+-.+...+... +.++++++-. +-..++.+.++.++
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~-------ge~vlyvs~e-e~~~~l~~~~~s~g 71 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF-------GEKVLYVSFE-EPPEELIENMKSFG 71 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH-------T--EEEEESS-S-HHHHHHHHHTTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc-------CCcEEEEEec-CCHHHHHHHHHHcC
Confidence 455699999999999975544344443331 3457777732 33355555555543
No 377
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.37 E-value=0.36 Score=50.51 Aligned_cols=17 Identities=29% Similarity=0.276 Sum_probs=14.6
Q ss_pred CeEEEccCCCchhHHhH
Q 010709 160 DLLGCAETGSGKTAAFT 176 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~~ 176 (503)
.+|+.||.|+|||+++.
T Consensus 40 a~Lf~GPpG~GKTtiAr 56 (624)
T PRK14959 40 AYLFSGTRGVGKTTIAR 56 (624)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 38899999999998764
No 378
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.37 E-value=0.14 Score=49.64 Aligned_cols=43 Identities=19% Similarity=0.256 Sum_probs=27.6
Q ss_pred HhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHH
Q 010709 155 ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (503)
Q Consensus 155 i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~L 206 (503)
+..+++++|+|+||||||+. +-.++.++- ...+++.+=-+.|+
T Consensus 157 v~~~~nili~G~tgSGKTTl-l~aL~~~ip--------~~~ri~tiEd~~El 199 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTF-TNAALREIP--------AIERLITVEDAREI 199 (332)
T ss_pred HHcCCcEEEECCCCCCHHHH-HHHHHhhCC--------CCCeEEEecCCCcc
Confidence 44678999999999999984 233443321 13456665555555
No 379
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=94.34 E-value=0.72 Score=47.51 Aligned_cols=129 Identities=19% Similarity=0.192 Sum_probs=77.6
Q ss_pred CCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhc-cCCCceEEEEECCccHH
Q 010709 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR-SLDSFKTAIVVGGTNIA 236 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 236 (503)
.+-.+.--|=-.|||. +++|++..++.. -.|-++.|+++.+-.++-+.+++..-+. .++.-.+...-+
T Consensus 202 QkaTVFLVPRRHGKTW-f~VpiIsllL~s-----~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~----- 270 (668)
T PHA03372 202 QKATVFLVPRRHGKTW-FIIPIISFLLKN-----IIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKD----- 270 (668)
T ss_pred ccceEEEecccCCcee-hHHHHHHHHHHh-----hcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecC-----
Confidence 3456777899999997 578898888773 2478899999999777766655543221 111111111111
Q ss_pred HHHHHhhCCCcEEEECcHH-----HHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhC-CCCCcEEEEEeeC
Q 010709 237 EQRSELRGGVSIVVATPGR-----FLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATM 310 (503)
Q Consensus 237 ~~~~~~~~~~~Ilv~Tp~~-----l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~-~~~~q~i~~SAT~ 310 (503)
--|.+.-|+. +......+...-+.+.++++||||-+. ...+..++-.+ .++.++|..|.|-
T Consensus 271 ---------~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm~q~~~KiIfISS~N 337 (668)
T PHA03372 271 ---------NVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK----KDAFNTILGFLAQNTTKIIFISSTN 337 (668)
T ss_pred ---------cEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC----HHHHHHhhhhhcccCceEEEEeCCC
Confidence 1233322221 111222334566789999999999543 33455555544 3577888888773
No 380
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.29 E-value=0.26 Score=45.59 Aligned_cols=46 Identities=22% Similarity=0.280 Sum_probs=28.3
Q ss_pred cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc---ccHHHHHH
Q 010709 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA---PTRELAQQ 209 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~---Ptr~La~q 209 (503)
.|.-++|+|++|+|||...+- ++...... .+..++++. |..+++..
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~-~~~~~~~~------~g~~vly~s~E~~~~~~~~r 60 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALN-IAENIAKK------QGKPVLFFSLEMSKEQLLQR 60 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHH-HHHHHHHh------CCCceEEEeCCCCHHHHHHH
Confidence 556699999999999975433 33333332 145577777 34444443
No 381
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=94.25 E-value=0.19 Score=52.99 Aligned_cols=40 Identities=13% Similarity=0.211 Sum_probs=26.1
Q ss_pred CCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEE
Q 010709 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (503)
Q Consensus 267 l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~S 307 (503)
+.+++++||||+|.|... -...+.+.+...+....+|+.+
T Consensus 117 ~gk~KVIIIDEad~Ls~~-A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKS-AFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHH-HHHHHHHHHHhCCCCcEEEEEe
Confidence 457899999999976532 2334566666656666565544
No 382
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.24 E-value=0.52 Score=46.30 Aligned_cols=47 Identities=13% Similarity=0.174 Sum_probs=29.6
Q ss_pred CCccEEEecchhHHhhCCCHHHHHHHHHhC-CCCCcEEEEEeeCCHHHH
Q 010709 268 SRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEIE 315 (503)
Q Consensus 268 ~~~~~vViDEaH~l~~~~~~~~~~~il~~~-~~~~q~i~~SAT~~~~~~ 315 (503)
++..+|.+||+| +-+-+-.-.+.+++..+ ....-+|+.|-++|.++.
T Consensus 126 ~~~~lLcfDEF~-V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~Ly 173 (362)
T PF03969_consen 126 KESRLLCFDEFQ-VTDIADAMILKRLFEALFKRGVVLVATSNRPPEDLY 173 (362)
T ss_pred hcCCEEEEeeee-ccchhHHHHHHHHHHHHHHCCCEEEecCCCChHHHc
Confidence 356799999999 32332233345555443 456677888888877654
No 383
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.24 E-value=1.6 Score=37.86 Aligned_cols=54 Identities=17% Similarity=0.283 Sum_probs=29.6
Q ss_pred CCccEEEecchhHHh-hCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHh
Q 010709 268 SRVSFVILDEADRML-DMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEY 321 (503)
Q Consensus 268 ~~~~~vViDEaH~l~-~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~ 321 (503)
.+.++||+|...... +......+..+.....+..-++.+.|.-..+....+..+
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~ 135 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAF 135 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHH
Confidence 467789999988542 111233344444433445556667776555544455444
No 384
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.24 E-value=0.35 Score=44.36 Aligned_cols=52 Identities=17% Similarity=0.172 Sum_probs=29.9
Q ss_pred cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHH
Q 010709 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 217 (503)
.|..+++.|++|+|||+.+...+. ..... +..++++.- .+...++.+..+.+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~-~~~~~-------g~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAY-KGLRD-------GDPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHH-HHHhc-------CCeEEEEEc-cCCHHHHHHHHHHh
Confidence 456799999999999975433222 22222 345677663 23334444444444
No 385
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.21 E-value=0.47 Score=47.56 Aligned_cols=42 Identities=17% Similarity=0.210 Sum_probs=23.9
Q ss_pred CCCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEee
Q 010709 266 SLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 309 (503)
Q Consensus 266 ~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 309 (503)
.+.+.+++||||+|++.... ...+.+.+...++...+| +.++
T Consensus 124 ~~~~~kvvIIdea~~l~~~~-~~~LLk~LEep~~~t~~I-l~t~ 165 (397)
T PRK14955 124 QKGRYRVYIIDEVHMLSIAA-FNAFLKTLEEPPPHAIFI-FATT 165 (397)
T ss_pred hcCCeEEEEEeChhhCCHHH-HHHHHHHHhcCCCCeEEE-EEeC
Confidence 35678999999999875321 223444444444444333 4434
No 386
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.20 E-value=0.45 Score=45.96 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=14.2
Q ss_pred CCeEEEccCCCchhHH
Q 010709 159 RDLLGCAETGSGKTAA 174 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~ 174 (503)
+.++..||+|+|||+.
T Consensus 246 kgvLm~GPPGTGKTlL 261 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLL 261 (491)
T ss_pred ceeeeeCCCCCcHHHH
Confidence 5699999999999973
No 387
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=94.17 E-value=0.071 Score=54.83 Aligned_cols=43 Identities=21% Similarity=0.215 Sum_probs=35.1
Q ss_pred CCCcHHHHHHHHHHh----cCCCeEEEccCCCchhHHhHHHHHHHHH
Q 010709 142 TRPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCV 184 (503)
Q Consensus 142 ~~~~~~Q~~~i~~i~----~~~~vii~~~TGsGKTl~~~lp~l~~~~ 184 (503)
-+|+.+|.+.+..++ .|+-.|.-+|||+|||+..+=..+.++.
T Consensus 14 y~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~ 60 (821)
T KOG1133|consen 14 YTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLR 60 (821)
T ss_pred CCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHH
Confidence 379999999887765 6888999999999999877666666544
No 388
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.16 E-value=0.75 Score=50.73 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=20.4
Q ss_pred HHHHHHHHhc------CCCeEEEccCCCchhHHh
Q 010709 148 QAQAMPVALS------GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 148 Q~~~i~~i~~------~~~vii~~~TGsGKTl~~ 175 (503)
|..-+..+++ ..++++.||.|+|||...
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVV 225 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHH
Confidence 5555655542 347999999999999754
No 389
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.15 E-value=0.79 Score=50.69 Aligned_cols=17 Identities=35% Similarity=0.399 Sum_probs=14.8
Q ss_pred CCeEEEccCCCchhHHh
Q 010709 159 RDLLGCAETGSGKTAAF 175 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~ 175 (503)
+++++.||+|+|||...
T Consensus 200 ~n~lL~G~pGvGKT~l~ 216 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIV 216 (857)
T ss_pred CceEEECCCCCCHHHHH
Confidence 47999999999999754
No 390
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=94.14 E-value=0.68 Score=44.81 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=24.9
Q ss_pred CccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEE
Q 010709 269 RVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (503)
Q Consensus 269 ~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~S 307 (503)
..++|+|||+|.+... ....+..++...++...+|+.+
T Consensus 102 ~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEe
Confidence 4679999999977432 2345666666666666666544
No 391
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=94.12 E-value=1 Score=39.02 Aligned_cols=53 Identities=28% Similarity=0.498 Sum_probs=41.0
Q ss_pred CCCccEEEecchhHHhhCCC--HHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHH
Q 010709 267 LSRVSFVILDEADRMLDMGF--EPQIREVMQNLPDKHQTLLFSATMPVEIEALAQ 319 (503)
Q Consensus 267 l~~~~~vViDEaH~l~~~~~--~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~ 319 (503)
-..+++||+||+-..++.++ ...+..+++..|+..-+|+..-.+|+.+.+.+.
T Consensus 113 ~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~AD 167 (178)
T PRK07414 113 EGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIAD 167 (178)
T ss_pred CCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCC
Confidence 46789999999998888774 456778888888887777777777877766543
No 392
>CHL00095 clpC Clp protease ATP binding subunit
Probab=94.10 E-value=0.73 Score=50.85 Aligned_cols=18 Identities=33% Similarity=0.331 Sum_probs=15.4
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
.+++++.||+|+|||..+
T Consensus 200 ~~n~lL~G~pGvGKTal~ 217 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIA 217 (821)
T ss_pred cCCeEEECCCCCCHHHHH
Confidence 357999999999999854
No 393
>PRK10689 transcription-repair coupling factor; Provisional
Probab=94.08 E-value=0.22 Score=56.48 Aligned_cols=75 Identities=12% Similarity=0.164 Sum_probs=63.2
Q ss_pred CCcEEEEEcchhhHHHHHHHHHHC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-ccccCCCCCCCCEEEE
Q 010709 374 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VASRGLDVMGVAHVVN 448 (503)
Q Consensus 374 ~~~~lIF~~~~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~~Gldip~v~~VI~ 448 (503)
..+++|.++++..|.++++.+.+. ++.+..++++.+..++.++++.+.+|..+|||+|. .+...+.+.++.+||.
T Consensus 649 g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 649 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEEE
Confidence 346999999999999999988753 46788899999999999999999999999999994 5555677778888773
No 394
>PRK06904 replicative DNA helicase; Validated
Probab=94.05 E-value=0.62 Score=47.67 Aligned_cols=114 Identities=14% Similarity=0.149 Sum_probs=52.7
Q ss_pred CCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEE-EC-CccH
Q 010709 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIV-VG-GTNI 235 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~-~~-~~~~ 235 (503)
|.=+||.|.||.|||.-+ +-+....... .+..++|...- --..|+..++-.... ++....+ .| ....
T Consensus 221 G~LiiIaarPg~GKTafa-lnia~~~a~~------~g~~Vl~fSlE-Ms~~ql~~Rlla~~s---~v~~~~i~~g~~l~~ 289 (472)
T PRK06904 221 SDLIIVAARPSMGKTTFA-MNLCENAAMA------SEKPVLVFSLE-MPAEQIMMRMLASLS---RVDQTKIRTGQNLDQ 289 (472)
T ss_pred CcEEEEEeCCCCChHHHH-HHHHHHHHHh------cCCeEEEEecc-CCHHHHHHHHHHhhC---CCCHHHhccCCCCCH
Confidence 344899999999999744 4344433321 13456666432 223344433332221 1222111 22 1222
Q ss_pred HHH------HHHhhCCCcEEEE-----CcHHHHHHHHcCCCCCCCccEEEecchhHHh
Q 010709 236 AEQ------RSELRGGVSIVVA-----TPGRFLDHLQQGNTSLSRVSFVILDEADRML 282 (503)
Q Consensus 236 ~~~------~~~~~~~~~Ilv~-----Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~ 282 (503)
.+. ...+.....+.|- |+..+...+.+.......+++||||=.+.+.
T Consensus 290 ~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 347 (472)
T PRK06904 290 QDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMR 347 (472)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcC
Confidence 221 1122223445553 3444433332211112358899999998664
No 395
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=93.99 E-value=0.14 Score=55.28 Aligned_cols=61 Identities=23% Similarity=0.270 Sum_probs=51.4
Q ss_pred CCcEEEEEcchhhHHHHHHHHHHCC-----CeEEE-EcCCCCHHHHHHHHHHHhcCCCcEEEEcccc
Q 010709 374 FPLTIVFVERKTRCDEVSEALVAEG-----LHAVA-LHGGRNQSDRESALRDFRNGSTNILVATDVA 434 (503)
Q Consensus 374 ~~~~lIF~~~~~~~~~l~~~L~~~~-----~~v~~-lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 434 (503)
++++++.++|..-+.+.++.|.+.. +.+.. +||.++.+++.+.+++|.+|..+|||+|..+
T Consensus 125 gkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 125 GKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred CCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 3569999999999999888887642 44333 9999999999999999999999999999654
No 396
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=93.96 E-value=0.15 Score=47.15 Aligned_cols=16 Identities=31% Similarity=0.314 Sum_probs=14.0
Q ss_pred CeEEEccCCCchhHHh
Q 010709 160 DLLGCAETGSGKTAAF 175 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~ 175 (503)
++++.||+|.|||+.+
T Consensus 54 HvLl~GPPGlGKTTLA 69 (332)
T COG2255 54 HVLLFGPPGLGKTTLA 69 (332)
T ss_pred eEEeeCCCCCcHHHHH
Confidence 5999999999999743
No 397
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=93.83 E-value=0.38 Score=48.67 Aligned_cols=39 Identities=18% Similarity=0.294 Sum_probs=24.3
Q ss_pred hcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 010709 156 LSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (503)
Q Consensus 156 ~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~ 201 (503)
..|.-++|.|++|.|||... +-+....... .+..++++.
T Consensus 192 ~~g~liviag~pg~GKT~~a-l~ia~~~a~~------~g~~v~~fS 230 (421)
T TIGR03600 192 VKGDLIVIGARPSMGKTTLA-LNIAENVALR------EGKPVLFFS 230 (421)
T ss_pred CCCceEEEEeCCCCCHHHHH-HHHHHHHHHh------CCCcEEEEE
Confidence 34556999999999999754 3343333211 144567775
No 398
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.82 E-value=1.1 Score=41.33 Aligned_cols=53 Identities=13% Similarity=0.157 Sum_probs=31.0
Q ss_pred cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q 010709 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 218 (503)
.|.-+++.|++|+|||+.....+... .. ++.+++++.=-. -..++.+.+..++
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~-~~-------~g~~~~y~~~e~-~~~~~~~~~~~~g 76 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGA-LK-------QGKKVYVITTEN-TSKSYLKQMESVK 76 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH-Hh-------CCCEEEEEEcCC-CHHHHHHHHHHCC
Confidence 34569999999999997543322222 22 256677776433 2344555555553
No 399
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.77 E-value=1.5 Score=40.88 Aligned_cols=124 Identities=15% Similarity=0.280 Sum_probs=68.2
Q ss_pred HHHhcCC-----CeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEE
Q 010709 153 PVALSGR-----DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTA 227 (503)
Q Consensus 153 ~~i~~~~-----~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~ 227 (503)
|.+..|+ -+++.||+|+||+. +.-++..... ...+-+.+..|+..|.-+-.++.+
T Consensus 156 PqlFtGkR~PwrgiLLyGPPGTGKSY--LAKAVATEAn----------STFFSvSSSDLvSKWmGESEkLVk-------- 215 (439)
T KOG0739|consen 156 PQLFTGKRKPWRGILLYGPPGTGKSY--LAKAVATEAN----------STFFSVSSSDLVSKWMGESEKLVK-------- 215 (439)
T ss_pred hhhhcCCCCcceeEEEeCCCCCcHHH--HHHHHHhhcC----------CceEEeehHHHHHHHhccHHHHHH--------
Confidence 4556664 38999999999994 4444433222 257777777887766544444331
Q ss_pred EEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCC---CHHHHHHH----HHhCC--
Q 010709 228 IVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG---FEPQIREV----MQNLP-- 298 (503)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~---~~~~~~~i----l~~~~-- 298 (503)
.|..+... .+-+.|.|||+|.+.+.. -...-++| +-+++
T Consensus 216 ---------------------------nLFemARe-----~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGV 263 (439)
T KOG0739|consen 216 ---------------------------NLFEMARE-----NKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGV 263 (439)
T ss_pred ---------------------------HHHHHHHh-----cCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhcc
Confidence 12222222 245789999999776542 11222222 33332
Q ss_pred --CCCcEEEEEeeCCH-HHHHHHHHhcCCCeEE
Q 010709 299 --DKHQTLLFSATMPV-EIEALAQEYLTDPVQV 328 (503)
Q Consensus 299 --~~~q~i~~SAT~~~-~~~~~~~~~~~~~~~~ 328 (503)
.+--++.+.||-.+ .+..-+++-+...+.+
T Consensus 264 G~d~~gvLVLgATNiPw~LDsAIRRRFekRIYI 296 (439)
T KOG0739|consen 264 GNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYI 296 (439)
T ss_pred ccCCCceEEEecCCCchhHHHHHHHHhhcceec
Confidence 23457888888533 3343444444444333
No 400
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.70 E-value=1.4 Score=42.08 Aligned_cols=129 Identities=19% Similarity=0.247 Sum_probs=69.0
Q ss_pred eEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc-c-cHHHHHHHHHHHHHHhccCCCceEEE-EECCccHHH
Q 010709 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA-P-TRELAQQIEKEVKALSRSLDSFKTAI-VVGGTNIAE 237 (503)
Q Consensus 161 vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~-P-tr~La~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 237 (503)
++++|-.|+|||+. +.=|.+.+.. .|.++++.+ - -|+-|..+.+.+.+- . ++.+.. -+|+.+..
T Consensus 142 il~vGVNG~GKTTT--IaKLA~~l~~------~g~~VllaA~DTFRAaAiEQL~~w~er---~-gv~vI~~~~G~DpAa- 208 (340)
T COG0552 142 ILFVGVNGVGKTTT--IAKLAKYLKQ------QGKSVLLAAGDTFRAAAIEQLEVWGER---L-GVPVISGKEGADPAA- 208 (340)
T ss_pred EEEEecCCCchHhH--HHHHHHHHHH------CCCeEEEEecchHHHHHHHHHHHHHHH---h-CCeEEccCCCCCcHH-
Confidence 88999999999986 3344444443 266677766 2 455544333333322 2 233322 12222211
Q ss_pred HHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhC-CCHHHHHHHHHhCCCCC------cEEEEEeeC
Q 010709 238 QRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM-GFEPQIREVMQNLPDKH------QTLLFSATM 310 (503)
Q Consensus 238 ~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~-~~~~~~~~il~~~~~~~------q~i~~SAT~ 310 (503)
...+-++. -.-+++++|++|=|-||-+. +....+.++.+-+.+.. -++.+=||.
T Consensus 209 -----------------VafDAi~~--Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAtt 269 (340)
T COG0552 209 -----------------VAFDAIQA--AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATT 269 (340)
T ss_pred -----------------HHHHHHHH--HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEccc
Confidence 12222222 12346777888877776544 34556666666655433 244448888
Q ss_pred CHHHHHHHHHh
Q 010709 311 PVEIEALAQEY 321 (503)
Q Consensus 311 ~~~~~~~~~~~ 321 (503)
..+--.-++.|
T Consensus 270 Gqnal~QAk~F 280 (340)
T COG0552 270 GQNALSQAKIF 280 (340)
T ss_pred ChhHHHHHHHH
Confidence 77655555555
No 401
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.67 E-value=0.58 Score=49.52 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=17.5
Q ss_pred CeEEEccCCCchhHHhHHHHHHHHHh
Q 010709 160 DLLGCAETGSGKTAAFTIPMIQHCVA 185 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~~lp~l~~~~~ 185 (503)
.+|+.||.|+|||..+. .+...+.+
T Consensus 40 a~Lf~Gp~G~GKttlA~-~lAk~L~c 64 (620)
T PRK14948 40 AYLFTGPRGTGKTSSAR-ILAKSLNC 64 (620)
T ss_pred eEEEECCCCCChHHHHH-HHHHHhcC
Confidence 47999999999998653 23334333
No 402
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=93.63 E-value=0.29 Score=46.76 Aligned_cols=16 Identities=25% Similarity=0.382 Sum_probs=14.0
Q ss_pred CeEEEccCCCchhHHh
Q 010709 160 DLLGCAETGSGKTAAF 175 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~ 175 (503)
.+|+.||+|+|||..+
T Consensus 164 SmIlWGppG~GKTtlA 179 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLA 179 (554)
T ss_pred ceEEecCCCCchHHHH
Confidence 5999999999999743
No 403
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=93.60 E-value=0.44 Score=49.11 Aligned_cols=40 Identities=15% Similarity=0.257 Sum_probs=27.3
Q ss_pred CCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEE
Q 010709 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (503)
Q Consensus 267 l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~S 307 (503)
...++++||||||+|... -...+.+.+...++...+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~-A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKE-AFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHH-HHHHHHHHHhhcCCceEEEEEE
Confidence 457899999999987533 3445666666666666656554
No 404
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.54 E-value=0.18 Score=44.56 Aligned_cols=31 Identities=32% Similarity=0.404 Sum_probs=23.8
Q ss_pred CcHHHHHHHHHHh-cCCCeEEEccCCCchhHH
Q 010709 144 PTSIQAQAMPVAL-SGRDLLGCAETGSGKTAA 174 (503)
Q Consensus 144 ~~~~Q~~~i~~i~-~~~~vii~~~TGsGKTl~ 174 (503)
..+-|.+.+.... .+..++++||||+|||+.
T Consensus 10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 4455666666654 577899999999999984
No 405
>PRK13764 ATPase; Provisional
Probab=93.50 E-value=0.18 Score=52.62 Aligned_cols=27 Identities=15% Similarity=0.258 Sum_probs=19.8
Q ss_pred cCCCeEEEccCCCchhHHhHHHHHHHHH
Q 010709 157 SGRDLLGCAETGSGKTAAFTIPMIQHCV 184 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~~lp~l~~~~ 184 (503)
.+++++++||||||||+.. ..++.++.
T Consensus 256 ~~~~ILIsG~TGSGKTTll-~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFA-QALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 4667999999999999843 44454443
No 406
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=93.46 E-value=0.49 Score=48.50 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=15.1
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
.+.+++.||+|+|||+.+
T Consensus 216 p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CcceEEECCCCCcHHHHH
Confidence 356999999999999743
No 407
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=93.44 E-value=0.79 Score=39.74 Aligned_cols=54 Identities=22% Similarity=0.378 Sum_probs=38.8
Q ss_pred CCCccEEEecchhHHhhCCC--HHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHH
Q 010709 267 LSRVSFVILDEADRMLDMGF--EPQIREVMQNLPDKHQTLLFSATMPVEIEALAQE 320 (503)
Q Consensus 267 l~~~~~vViDEaH~l~~~~~--~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~ 320 (503)
-.++++||+||.--.+..++ ...+..++...|...-+|+..-..|+.+-+.+..
T Consensus 120 ~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADl 175 (198)
T COG2109 120 DGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADL 175 (198)
T ss_pred CCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHH
Confidence 34799999999998877764 3556677777777776666665667777766553
No 408
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.42 E-value=0.19 Score=47.10 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHhc--CCCeEEEccCCCchhHHhHHHHHHHH
Q 010709 145 TSIQAQAMPVALS--GRDLLGCAETGSGKTAAFTIPMIQHC 183 (503)
Q Consensus 145 ~~~Q~~~i~~i~~--~~~vii~~~TGsGKTl~~~lp~l~~~ 183 (503)
.+.|.+.+..++. +..++|+|+||||||+.. ..++..+
T Consensus 65 ~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i 104 (264)
T cd01129 65 KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSEL 104 (264)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhh
Confidence 3345666655543 335899999999999853 3344443
No 409
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=93.37 E-value=0.77 Score=44.25 Aligned_cols=52 Identities=10% Similarity=0.176 Sum_probs=31.9
Q ss_pred HHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEee
Q 010709 255 RFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 309 (503)
Q Consensus 255 ~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 309 (503)
.+.+.+.... .....+++|||+||.|... -.+.+.+++..-+ +..+|+++..
T Consensus 111 ~i~~~l~~~p-~~~~~kVvII~~ae~m~~~-aaNaLLK~LEEPp-~~~fILi~~~ 162 (314)
T PRK07399 111 EIKRFLSRPP-LEAPRKVVVIEDAETMNEA-AANALLKTLEEPG-NGTLILIAPS 162 (314)
T ss_pred HHHHHHccCc-ccCCceEEEEEchhhcCHH-HHHHHHHHHhCCC-CCeEEEEECC
Confidence 3444444322 3467899999999987432 3555667776655 5655555543
No 410
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=93.30 E-value=0.083 Score=55.10 Aligned_cols=151 Identities=20% Similarity=0.316 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHHh--------cCCC--eEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHH
Q 010709 144 PTSIQAQAMPVAL--------SGRD--LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 213 (503)
Q Consensus 144 ~~~~Q~~~i~~i~--------~~~~--vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~ 213 (503)
+...|.+++-..- .|.. .+|-...|.||-....-.++...++- .+++|.+.=+..|--...+.
T Consensus 265 lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkG-------RKrAlW~SVSsDLKfDAERD 337 (1300)
T KOG1513|consen 265 LSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKG-------RKRALWFSVSSDLKFDAERD 337 (1300)
T ss_pred hhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcc-------cceeEEEEeccccccchhhc
Q ss_pred HHHHh------ccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHH-cCCCCCCCcc------------EEE
Q 010709 214 VKALS------RSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQ-QGNTSLSRVS------------FVI 274 (503)
Q Consensus 214 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~-~~~~~l~~~~------------~vV 274 (503)
++..+ ..++.+++.-+.+..+..-. -.|+|+|+..|.-.-+ .+.....+++ +||
T Consensus 338 L~DigA~~I~V~alnK~KYakIss~en~n~k-------rGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIv 410 (1300)
T KOG1513|consen 338 LRDIGATGIAVHALNKFKYAKISSKENTNTK-------RGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIV 410 (1300)
T ss_pred hhhcCCCCccceehhhcccccccccccCCcc-------ceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEE
Q ss_pred ecchhHHhhCC---------CHHHHHHHHHhCCCCCcEEEEEee
Q 010709 275 LDEADRMLDMG---------FEPQIREVMQNLPDKHQTLLFSAT 309 (503)
Q Consensus 275 iDEaH~l~~~~---------~~~~~~~il~~~~~~~q~i~~SAT 309 (503)
+||||+.-+.. .+..+..+-+.+|+.+ +|.-|||
T Consensus 411 fDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~AR-VVYASAT 453 (1300)
T KOG1513|consen 411 FDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNAR-VVYASAT 453 (1300)
T ss_pred ehhhhhhcccccccCCCcCcccHhHHHHHHhCCCce-EEEeecc
No 411
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=93.21 E-value=0.38 Score=45.04 Aligned_cols=39 Identities=23% Similarity=0.238 Sum_probs=25.1
Q ss_pred cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcc
Q 010709 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 202 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~P 202 (503)
.|.=++|.|.||.|||..+ +-+...+... .+..+++++.
T Consensus 18 ~g~L~vi~a~pg~GKT~~~-l~ia~~~a~~------~~~~vly~Sl 56 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFA-LQIALNAALN------GGYPVLYFSL 56 (259)
T ss_dssp TT-EEEEEESTTSSHHHHH-HHHHHHHHHT------TSSEEEEEES
T ss_pred cCcEEEEEecccCCchHHH-HHHHHHHHHh------cCCeEEEEcC
Confidence 3445999999999999855 4344444432 1356888874
No 412
>PRK10436 hypothetical protein; Provisional
Probab=93.20 E-value=0.18 Score=51.22 Aligned_cols=38 Identities=32% Similarity=0.309 Sum_probs=25.8
Q ss_pred cHHHHHHHHHHhc--CCCeEEEccCCCchhHHhHHHHHHHH
Q 010709 145 TSIQAQAMPVALS--GRDLLGCAETGSGKTAAFTIPMIQHC 183 (503)
Q Consensus 145 ~~~Q~~~i~~i~~--~~~vii~~~TGsGKTl~~~lp~l~~~ 183 (503)
.+.|.+.+..++. +.-++++||||||||+.. ..++.++
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhh
Confidence 4446666666553 345999999999999864 4455553
No 413
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=93.19 E-value=0.065 Score=53.50 Aligned_cols=49 Identities=31% Similarity=0.335 Sum_probs=37.3
Q ss_pred CeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q 010709 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 218 (503)
+++++|+||+|||.++++|-+.. . +..++|+=|.-++........+..+
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~---~-------~~s~vv~D~Kge~~~~t~~~r~~~G 49 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLT---W-------PGSVVVLDPKGENFELTSEHRRALG 49 (384)
T ss_pred CeeEecCCCCCCccEEEccchhc---C-------CCCEEEEccchhHHHHHHHHHHHcC
Confidence 57899999999999998887653 1 2447777799899887776665543
No 414
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=93.00 E-value=1.1 Score=45.68 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=23.7
Q ss_pred CCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEE
Q 010709 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLF 306 (503)
Q Consensus 267 l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~ 306 (503)
..+.++|||||+|.+... -...+.+.+...++...+|+.
T Consensus 119 ~~~~kvvIIdead~lt~~-~~n~LLk~lEep~~~~~~Il~ 157 (451)
T PRK06305 119 KSRYKIYIIDEVHMLTKE-AFNSLLKTLEEPPQHVKFFLA 157 (451)
T ss_pred cCCCEEEEEecHHhhCHH-HHHHHHHHhhcCCCCceEEEE
Confidence 356789999999987532 133445555554444544443
No 415
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=93.00 E-value=0.11 Score=47.69 Aligned_cols=14 Identities=29% Similarity=0.434 Sum_probs=12.3
Q ss_pred eEEEccCCCchhHH
Q 010709 161 LLGCAETGSGKTAA 174 (503)
Q Consensus 161 vii~~~TGsGKTl~ 174 (503)
++|.|+.|+|||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999984
No 416
>PF12846 AAA_10: AAA-like domain
Probab=92.93 E-value=0.14 Score=49.11 Aligned_cols=43 Identities=23% Similarity=0.485 Sum_probs=30.4
Q ss_pred CCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHH
Q 010709 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQ 208 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~ 208 (503)
+++++|+|+||+|||.... .++...... +..++++=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~-~l~~~~~~~-------g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK-NLLEQLIRR-------GPRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHHc-------CCCEEEEcCCchHHH
Confidence 4679999999999998664 555555554 466777766655544
No 417
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=92.90 E-value=0.079 Score=54.51 Aligned_cols=50 Identities=30% Similarity=0.351 Sum_probs=38.7
Q ss_pred CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q 010709 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 218 (503)
.++++.||||||||..+++|.+.. + +.-+||+=|--+|........++.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~---~-------~~s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN---Y-------PGSMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh---c-------cCCEEEEECCCcHHHHHHHHHHHCC
Confidence 469999999999999999997743 2 1246777798899887777666654
No 418
>PRK07004 replicative DNA helicase; Provisional
Probab=92.89 E-value=0.57 Score=47.82 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=14.8
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
|.-++|.|.+|.|||..+
T Consensus 213 g~liviaarpg~GKT~~a 230 (460)
T PRK07004 213 GELIIVAGRPSMGKTAFS 230 (460)
T ss_pred CceEEEEeCCCCCccHHH
Confidence 445899999999999754
No 419
>PRK08840 replicative DNA helicase; Provisional
Probab=92.88 E-value=1 Score=45.96 Aligned_cols=19 Identities=21% Similarity=0.169 Sum_probs=15.1
Q ss_pred cCCCeEEEccCCCchhHHh
Q 010709 157 SGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~ 175 (503)
.|.=++|.|.||.|||.-+
T Consensus 216 ~g~LiviaarPg~GKTafa 234 (464)
T PRK08840 216 GSDLIIVAARPSMGKTTFA 234 (464)
T ss_pred CCceEEEEeCCCCchHHHH
Confidence 3445899999999999754
No 420
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.87 E-value=0.78 Score=48.41 Aligned_cols=41 Identities=12% Similarity=0.165 Sum_probs=24.4
Q ss_pred CCCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEE
Q 010709 266 SLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (503)
Q Consensus 266 ~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~S 307 (503)
.+.+.+++||||+|.|.... ...+.+.+...++...+|+++
T Consensus 124 ~~~~~KVvIIdEad~Lt~~a-~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 124 QKGRYRVYIIDEVHMLSTAA-FNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred hcCCCEEEEEeChhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 35678999999999875332 233444455544444444444
No 421
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=92.86 E-value=0.21 Score=45.68 Aligned_cols=55 Identities=15% Similarity=0.381 Sum_probs=29.3
Q ss_pred CcHHHHHHHHcCCCCCCCccEEEecchhHHh-hC----CCHHHHHHHHHhCCC-CCcEEEEEeeC
Q 010709 252 TPGRFLDHLQQGNTSLSRVSFVILDEADRML-DM----GFEPQIREVMQNLPD-KHQTLLFSATM 310 (503)
Q Consensus 252 Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~-~~----~~~~~~~~il~~~~~-~~q~i~~SAT~ 310 (503)
+...+.+.+...... -+|||||+|.+. .. .+...+..++..... ....++++++-
T Consensus 105 ~l~~~~~~l~~~~~~----~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 105 ALERLLEKLKKKGKK----VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp -HHHHHHHHHHCHCC----EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred HHHHHHHHHHhcCCc----EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 334455555542211 689999999988 21 345556666666322 22344456654
No 422
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=92.84 E-value=0.14 Score=35.72 Aligned_cols=25 Identities=32% Similarity=0.411 Sum_probs=18.7
Q ss_pred CCCeEEEccCCCchhHHhHHHHHHHHH
Q 010709 158 GRDLLGCAETGSGKTAAFTIPMIQHCV 184 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~~lp~l~~~~ 184 (503)
|+..++.|++|+|||+. +-++..++
T Consensus 23 g~~tli~G~nGsGKSTl--lDAi~~~L 47 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTL--LDAIQTVL 47 (62)
T ss_pred CcEEEEECCCCCCHHHH--HHHHHHHH
Confidence 45699999999999983 55555443
No 423
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=92.83 E-value=0.17 Score=52.55 Aligned_cols=39 Identities=13% Similarity=0.152 Sum_probs=23.5
Q ss_pred CCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEE
Q 010709 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (503)
Q Consensus 268 ~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~S 307 (503)
.+.+++||||||.|... -...+.+.+...++...+|+++
T Consensus 118 ~~~KVIIIDEad~Lt~~-A~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 118 FKYKVYIIDEAHMLSTS-AWNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred CCcEEEEEechHhCCHH-HHHHHHHHHHhCCCcEEEEEEC
Confidence 45789999999977432 2344555555555555444433
No 424
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=92.83 E-value=0.36 Score=50.11 Aligned_cols=68 Identities=31% Similarity=0.516 Sum_probs=56.1
Q ss_pred EEEEEcchhhHHHHHHHHHHC-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEc-----cccccC-CCCCCCCE
Q 010709 377 TIVFVERKTRCDEVSEALVAE-----GLHAVALHGGRNQSDRESALRDFRNGSTNILVAT-----DVASRG-LDVMGVAH 445 (503)
Q Consensus 377 ~lIF~~~~~~~~~l~~~L~~~-----~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~~~G-ldip~v~~ 445 (503)
+||.++|++.|.++++.+... ++.+..++||.+...+...++ .| .+|||+| +.+.+| +++..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~---~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALK---RG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHh---cC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 899999999999998888653 577899999999877775554 46 9999999 467777 88999998
Q ss_pred EEE
Q 010709 446 VVN 448 (503)
Q Consensus 446 VI~ 448 (503)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 884
No 425
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.77 E-value=0.095 Score=49.07 Aligned_cols=27 Identities=30% Similarity=0.324 Sum_probs=19.0
Q ss_pred cCCCeEEEccCCCchhHHhHHHHHHHHHh
Q 010709 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVA 185 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~~lp~l~~~~~ 185 (503)
...|+++.||||||||+.+ --|..++.
T Consensus 96 ~KSNILLiGPTGsGKTlLA--qTLAk~Ln 122 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLA--QTLAKILN 122 (408)
T ss_pred eeccEEEECCCCCcHHHHH--HHHHHHhC
Confidence 4457999999999999743 23444443
No 426
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.76 E-value=0.3 Score=46.97 Aligned_cols=55 Identities=20% Similarity=0.212 Sum_probs=35.2
Q ss_pred CCcHHHHH-HHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHH
Q 010709 143 RPTSIQAQ-AMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (503)
Q Consensus 143 ~~~~~Q~~-~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~L 206 (503)
.+.+.|.. .+.++.++++++++|+||+|||+. +.+++..+-. ..+++.+=-+.++
T Consensus 127 t~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~Ip~--------~~rivtIEdt~E~ 182 (312)
T COG0630 127 TISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFIPP--------EERIVTIEDTPEL 182 (312)
T ss_pred CCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhCCc--------hhcEEEEeccccc
Confidence 44555554 445556788999999999999984 3444444322 3446666566555
No 427
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=92.75 E-value=0.33 Score=47.58 Aligned_cols=43 Identities=21% Similarity=0.226 Sum_probs=25.6
Q ss_pred cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHH
Q 010709 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~L 206 (503)
.+..++++||||||||+.. ..++.++... .+.+++.+-...+.
T Consensus 121 ~~g~ili~G~tGSGKTT~l-~al~~~i~~~------~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTL-ASMIDYINKN------AAGHIITIEDPIEY 163 (343)
T ss_pred cCcEEEEECCCCCCHHHHH-HHHHHhhCcC------CCCEEEEEcCChhh
Confidence 3567999999999999853 3344433211 13455655544443
No 428
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=92.68 E-value=0.42 Score=46.59 Aligned_cols=64 Identities=19% Similarity=0.183 Sum_probs=38.8
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHh-cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHH
Q 010709 132 IMKDIEFHEYTRPTSIQAQAMPVAL-SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (503)
Q Consensus 132 l~~~l~~~~~~~~~~~Q~~~i~~i~-~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~L 206 (503)
-+..+...|+ ..+.+.+.+..+. .+++++++|+||+|||+. +.++..... ...+++++-.+.||
T Consensus 153 tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl--l~al~~~i~-------~~~riv~iEd~~El 217 (340)
T TIGR03819 153 TLDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTL--LSALLALVA-------PDERIVLVEDAAEL 217 (340)
T ss_pred CHHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH--HHHHHccCC-------CCCcEEEECCccee
Confidence 3455555554 3455666666554 566899999999999983 223322221 13456666666666
No 429
>PRK09087 hypothetical protein; Validated
Probab=92.66 E-value=0.32 Score=44.49 Aligned_cols=42 Identities=14% Similarity=0.109 Sum_probs=24.7
Q ss_pred cEEEecchhHHhhCCCHHHHHHHHHhCCC-CCcEEEEEeeCCHHH
Q 010709 271 SFVILDEADRMLDMGFEPQIREVMQNLPD-KHQTLLFSATMPVEI 314 (503)
Q Consensus 271 ~~vViDEaH~l~~~~~~~~~~~il~~~~~-~~q~i~~SAT~~~~~ 314 (503)
++|+||++|.+. .....+..++..+.. ..++|+.|.+.|...
T Consensus 89 ~~l~iDDi~~~~--~~~~~lf~l~n~~~~~g~~ilits~~~p~~~ 131 (226)
T PRK09087 89 GPVLIEDIDAGG--FDETGLFHLINSVRQAGTSLLMTSRLWPSSW 131 (226)
T ss_pred CeEEEECCCCCC--CCHHHHHHHHHHHHhCCCeEEEECCCChHHh
Confidence 389999999652 234556666665544 444444444455443
No 430
>PRK08006 replicative DNA helicase; Provisional
Probab=92.61 E-value=1.5 Score=44.85 Aligned_cols=18 Identities=22% Similarity=0.171 Sum_probs=14.6
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
|.=++|.|.+|.|||.-+
T Consensus 224 G~LiiIaarPgmGKTafa 241 (471)
T PRK08006 224 SDLIIVAARPSMGKTTFA 241 (471)
T ss_pred CcEEEEEeCCCCCHHHHH
Confidence 344899999999999754
No 431
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=92.58 E-value=2.9 Score=40.69 Aligned_cols=41 Identities=15% Similarity=0.246 Sum_probs=27.5
Q ss_pred CCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEe
Q 010709 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSA 308 (503)
Q Consensus 267 l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SA 308 (503)
....+++||||+|+|... -.+.+.+.+..-++...+|+.+.
T Consensus 108 ~~~~kvviI~~a~~~~~~-a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTAS-AANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred ccCceEEEeehHhhhCHH-HHHHHHHHhcCCCCCceEEEEeC
Confidence 457899999999987533 34556666666566665555443
No 432
>PRK08506 replicative DNA helicase; Provisional
Probab=92.58 E-value=0.83 Score=46.84 Aligned_cols=49 Identities=18% Similarity=0.168 Sum_probs=27.9
Q ss_pred cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHH
Q 010709 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 214 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~ 214 (503)
.|.-++|.|.||.|||..+ +-+....... +..++++.. ..-..|+..++
T Consensus 191 ~G~LivIaarpg~GKT~fa-l~ia~~~~~~-------g~~V~~fSl-EMs~~ql~~Rl 239 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLC-LNMALKALNQ-------DKGVAFFSL-EMPAEQLMLRM 239 (472)
T ss_pred CCceEEEEcCCCCChHHHH-HHHHHHHHhc-------CCcEEEEeC-cCCHHHHHHHH
Confidence 3445899999999999754 3344443332 445666643 22334444433
No 433
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=92.53 E-value=0.43 Score=47.62 Aligned_cols=17 Identities=29% Similarity=0.384 Sum_probs=14.7
Q ss_pred CCeEEEccCCCchhHHh
Q 010709 159 RDLLGCAETGSGKTAAF 175 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~ 175 (503)
+.+++.||+|+|||+.+
T Consensus 166 ~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CceEEECCCCCChHHHH
Confidence 46999999999999753
No 434
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=92.45 E-value=0.78 Score=48.95 Aligned_cols=40 Identities=15% Similarity=0.186 Sum_probs=23.6
Q ss_pred CCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEE
Q 010709 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (503)
Q Consensus 267 l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~S 307 (503)
..+.+++||||||.|... -...+.+.+...++...+|+.+
T Consensus 116 ~g~~KV~IIDEa~~LT~~-A~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSKS-AFNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred cCCCEEEEEEChhhCCHH-HHHHHHHHhhcCCCceEEEEEc
Confidence 467899999999977532 2334444455544444344433
No 435
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=92.44 E-value=0.19 Score=47.48 Aligned_cols=43 Identities=21% Similarity=0.291 Sum_probs=28.3
Q ss_pred hcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHH
Q 010709 156 LSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (503)
Q Consensus 156 ~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~L 206 (503)
..+.+++++|+||||||+.. -.++.++... ..+++++-...|+
T Consensus 125 ~~~~~ili~G~tGSGKTT~l-~all~~i~~~-------~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLL-NALLEEIPPE-------DERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHH-HHHHHHCHTT-------TSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccchHH-HHHhhhcccc-------ccceEEeccccce
Confidence 35678999999999999854 4444443221 3567777766665
No 436
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.42 E-value=1 Score=49.21 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=15.3
Q ss_pred cCCCeEEEccCCCchhHH
Q 010709 157 SGRDLLGCAETGSGKTAA 174 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~ 174 (503)
.++.+++.||+|+|||+.
T Consensus 211 ~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCceEEEECCCCCChHHH
Confidence 356799999999999974
No 437
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.41 E-value=0.92 Score=46.76 Aligned_cols=60 Identities=18% Similarity=0.246 Sum_probs=38.6
Q ss_pred HHHHHHhc-----CCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q 010709 150 QAMPVALS-----GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (503)
Q Consensus 150 ~~i~~i~~-----~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 218 (503)
..+..++. |.-++|.||+|+|||+..+. ++..... ++.+++|+. ..|-..|+.+.++.++
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~-f~~~~~~-------~ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSK-FLENACA-------NKERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHH-HHHHHHH-------CCCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 34555554 45699999999999985433 2222222 255688877 4466677777777765
No 438
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=92.41 E-value=1.4 Score=41.99 Aligned_cols=56 Identities=16% Similarity=0.215 Sum_probs=31.8
Q ss_pred HHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhC---CCCCcEEEEEeeC
Q 010709 255 RFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL---PDKHQTLLFSATM 310 (503)
Q Consensus 255 ~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~---~~~~q~i~~SAT~ 310 (503)
.|+..+..+...-+.--+.|+||+|-.........+..++..- +.++-++++|.-+
T Consensus 123 ~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 123 KLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 3455555433322222467889999766665555555555433 3455577777665
No 439
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=92.35 E-value=1.7 Score=42.85 Aligned_cols=146 Identities=20% Similarity=0.170 Sum_probs=60.5
Q ss_pred EEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccH-HHHHHHHH---HHHHHhccCCCceEEEEECCccHHH
Q 010709 162 LGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR-ELAQQIEK---EVKALSRSLDSFKTAIVVGGTNIAE 237 (503)
Q Consensus 162 ii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr-~La~q~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (503)
++.++-|+|||......++.++...+. ...++++ |+. .+...+.+ .+..+.................
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~-----~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 71 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP-----GRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKI--- 71 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS-------EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEE---
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC-----CcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcE---
Confidence 578899999999877767777666421 2344444 665 44444333 2223322211111110011100
Q ss_pred HHHHhhCCCcEEEECcHHH--HHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeC--CHH
Q 010709 238 QRSELRGGVSIVVATPGRF--LDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM--PVE 313 (503)
Q Consensus 238 ~~~~~~~~~~Ilv~Tp~~l--~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~--~~~ 313 (503)
.+.++..|.+.+.+.- ..-+. =..+++|++||+-.+.+..+...+........... .+..|.|+ ...
T Consensus 72 ---~~~nG~~i~~~~~~~~~~~~~~~-----G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~p~~~~~~ 142 (384)
T PF03237_consen 72 ---ILPNGSRIQFRGADSPDSGDNIR-----GFEYDLIIIDEAAKVPDDAFSELIRRLRATWGGSI-RMYISTPPNPGGW 142 (384)
T ss_dssp ---EETTS-EEEEES-----SHHHHH-----TS--SEEEEESGGGSTTHHHHHHHHHHHHCSTT---EEEEEE---SSSH
T ss_pred ---EecCceEEEEecccccccccccc-----ccccceeeeeecccCchHHHHHHHHhhhhcccCcc-eEEeecCCCCCCc
Confidence 0134455666663321 11111 14678999999875543323333333333332222 22444433 334
Q ss_pred HHHHHHHhcCCC
Q 010709 314 IEALAQEYLTDP 325 (503)
Q Consensus 314 ~~~~~~~~~~~~ 325 (503)
...+......+.
T Consensus 143 ~~~~~~~~~~~~ 154 (384)
T PF03237_consen 143 FYEIFQRNLDDD 154 (384)
T ss_dssp HHHHHHHHHCTS
T ss_pred eeeeeehhhcCC
Confidence 445555555544
No 440
>PRK04841 transcriptional regulator MalT; Provisional
Probab=92.33 E-value=0.7 Score=51.93 Aligned_cols=43 Identities=12% Similarity=0.373 Sum_probs=32.9
Q ss_pred CccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCC
Q 010709 269 RVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMP 311 (503)
Q Consensus 269 ~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~ 311 (503)
.--+||||++|.+-+......+..++...++...+|+.|-+.|
T Consensus 121 ~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 121 QPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred CCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 3458999999987544456678888888888888888887643
No 441
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=92.32 E-value=0.4 Score=46.70 Aligned_cols=17 Identities=29% Similarity=0.296 Sum_probs=14.7
Q ss_pred CCeEEEccCCCchhHHh
Q 010709 159 RDLLGCAETGSGKTAAF 175 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~ 175 (503)
.++++.||+|+|||..+
T Consensus 52 ~~~ll~GppG~GKT~la 68 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLA 68 (328)
T ss_pred CcEEEECCCCccHHHHH
Confidence 46999999999999754
No 442
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=92.29 E-value=0.26 Score=47.51 Aligned_cols=17 Identities=35% Similarity=0.339 Sum_probs=14.3
Q ss_pred CCeEEEccCCCchhHHh
Q 010709 159 RDLLGCAETGSGKTAAF 175 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~ 175 (503)
.++++.||+|+|||..+
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35999999999999743
No 443
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=92.22 E-value=1.8 Score=42.59 Aligned_cols=95 Identities=17% Similarity=0.142 Sum_probs=47.5
Q ss_pred CCCCCCcccCCCHHHHHHHHHHcCceEEecCCCCCCC---CCcCCcccC-CCCHHHHHHHHHC-CCCCCcHHHHHHHHH-
Q 010709 81 NWKPSDRVLRFNPEQIEEVRLRLNVDVTVASGSVPAP---APIESFTDM-CLHPSIMKDIEFH-EYTRPTSIQAQAMPV- 154 (503)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~-~l~~~l~~~l~~~-~~~~~~~~Q~~~i~~- 154 (503)
.|.+.+.-.=.++.++..+..+.+..+.+....+..- .++...+.. +.+++-...-..+ ....++|.++..+..
T Consensus 71 ~y~~~~~d~yvs~~~ir~~~lr~gd~v~g~~r~~~~~e~~~~l~~v~~vng~~~~~~~~r~~f~~l~p~~p~~R~~le~~ 150 (416)
T PRK09376 71 NYLPGPDDIYVSPSQIRRFNLRTGDTVEGKIRPPKEGERYFALLKVETVNGEDPEKARNRPLFENLTPLYPNERLRLETG 150 (416)
T ss_pred CCCCCCCCeeeCHHHHHhcCCCCCCEEEEEeeCCCCCCCccceEEEeeeCCCCHHHhcCCCCcccCCCCChhhcccccCC
Confidence 3444444444667778888777777776543211000 011111111 2333333222111 223334444443332
Q ss_pred ------------H---hcCCCeEEEccCCCchhHHh
Q 010709 155 ------------A---LSGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 155 ------------i---~~~~~vii~~~TGsGKTl~~ 175 (503)
+ -.|+..+|.||.|+|||+..
T Consensus 151 ~~~~~~~rvID~l~PIGkGQR~lIvgppGvGKTTLa 186 (416)
T PRK09376 151 NPEDLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVLL 186 (416)
T ss_pred CCcccceeeeeeecccccCceEEEeCCCCCChhHHH
Confidence 2 25788999999999999743
No 444
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=92.21 E-value=0.11 Score=54.43 Aligned_cols=50 Identities=24% Similarity=0.159 Sum_probs=40.1
Q ss_pred CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q 010709 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 218 (503)
.++++.||||+|||..+++|-+... +.-++|+=|.-|+....+...++.+
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~----------~~S~VV~DpKGEl~~~Ta~~R~~~G 208 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW----------EDSVVVHDIKLENYELTSGWREKQG 208 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC----------CCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 4699999999999999999988652 2337777799999988877776654
No 445
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.20 E-value=0.52 Score=49.89 Aligned_cols=42 Identities=12% Similarity=0.239 Sum_probs=26.3
Q ss_pred CCCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEee
Q 010709 266 SLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 309 (503)
Q Consensus 266 ~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 309 (503)
.+.+.+++||||+|.|... -...+.+.+...+.... +++.+|
T Consensus 118 ~~~~~KVvIIdea~~Ls~~-a~naLLK~LEepp~~ti-fIL~tt 159 (614)
T PRK14971 118 QIGKYKIYIIDEVHMLSQA-AFNAFLKTLEEPPSYAI-FILATT 159 (614)
T ss_pred ccCCcEEEEEECcccCCHH-HHHHHHHHHhCCCCCeE-EEEEeC
Confidence 3567899999999987532 23445566666555453 444444
No 446
>PHA00012 I assembly protein
Probab=92.05 E-value=2 Score=40.94 Aligned_cols=54 Identities=11% Similarity=0.225 Sum_probs=29.8
Q ss_pred CCCccEEEecchhHHhhC-CCH----HHHHHHHHhCCC-CCcEEEEEeeCCHHHHHHHHHh
Q 010709 267 LSRVSFVILDEADRMLDM-GFE----PQIREVMQNLPD-KHQTLLFSATMPVEIEALAQEY 321 (503)
Q Consensus 267 l~~~~~vViDEaH~l~~~-~~~----~~~~~il~~~~~-~~q~i~~SAT~~~~~~~~~~~~ 321 (503)
..+-.++|+||||..++. .+. ..+.+.+...++ ..-++++|-.+ ..+...++..
T Consensus 79 ep~gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~hRh~G~DvilITQ~p-s~VDs~IR~l 138 (361)
T PHA00012 79 ESKNGLLVLDECGTWFNSRSWNDKERQPVIDWFLHARKLGWDIIFIIQDI-SIMDKQAREA 138 (361)
T ss_pred CCCCcEEEEECcccccCCCCcCcCCcHHHHHHHHHhccCCceEEEEcCCH-HHHhHHHHHh
Confidence 356679999999987753 222 334554444433 34455555444 3455445433
No 447
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.01 E-value=0.89 Score=46.70 Aligned_cols=41 Identities=15% Similarity=0.280 Sum_probs=23.4
Q ss_pred CCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEee
Q 010709 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 309 (503)
Q Consensus 267 l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 309 (503)
..+.+++||||||.+.... ...+.+.+...++.. ++++.+|
T Consensus 117 ~~~~KVvIIDEad~Lt~~a-~naLLk~LEepp~~~-v~Il~tt 157 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEA-FNALLKTLEEPPPRT-IFILCTT 157 (486)
T ss_pred cCCeeEEEEEChhhcCHHH-HHHHHHHHhcCCCCe-EEEEEEC
Confidence 4578999999999775322 233444444444444 3334333
No 448
>PRK05748 replicative DNA helicase; Provisional
Probab=91.91 E-value=1.3 Score=45.16 Aligned_cols=50 Identities=14% Similarity=0.139 Sum_probs=27.9
Q ss_pred cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHH
Q 010709 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 214 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~ 214 (503)
.|.-++|.|+||.|||.-. +-++...... .+..++++.. ..-..|+..++
T Consensus 202 ~G~livIaarpg~GKT~~a-l~ia~~~a~~------~g~~v~~fSl-Ems~~~l~~R~ 251 (448)
T PRK05748 202 PNDLIIVAARPSVGKTAFA-LNIAQNVATK------TDKNVAIFSL-EMGAESLVMRM 251 (448)
T ss_pred CCceEEEEeCCCCCchHHH-HHHHHHHHHh------CCCeEEEEeC-CCCHHHHHHHH
Confidence 3445899999999999754 4444443321 1345666542 23334444444
No 449
>PRK05973 replicative DNA helicase; Provisional
Probab=91.89 E-value=0.39 Score=44.02 Aligned_cols=66 Identities=18% Similarity=0.184 Sum_probs=38.1
Q ss_pred CCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q 010709 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (503)
Q Consensus 143 ~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 218 (503)
.++|. .+..--+..|.-++|.|++|+|||+..+-.+. ....+ |.+++|+.-- +-..|+.+++..++
T Consensus 50 ~~~p~-~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~-~~a~~-------Ge~vlyfSlE-es~~~i~~R~~s~g 115 (237)
T PRK05973 50 ATTPA-EELFSQLKPGDLVLLGARPGHGKTLLGLELAV-EAMKS-------GRTGVFFTLE-YTEQDVRDRLRALG 115 (237)
T ss_pred CCCCH-HHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHH-HHHhc-------CCeEEEEEEe-CCHHHHHHHHHHcC
Confidence 34552 22333444566799999999999985533333 22222 4557777532 22456666666653
No 450
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=91.87 E-value=1.6 Score=45.83 Aligned_cols=39 Identities=26% Similarity=0.540 Sum_probs=26.5
Q ss_pred hhCCCcEEE-ECcHHHHHHHHcCCCCCCCccEEEecchhHHhh
Q 010709 242 LRGGVSIVV-ATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD 283 (503)
Q Consensus 242 ~~~~~~Ilv-~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~ 283 (503)
+++..+-.| +-||++.+.+.+-... --++.|||+|.+..
T Consensus 480 IkGHRRTYVGAMPGkiIq~LK~v~t~---NPliLiDEvDKlG~ 519 (906)
T KOG2004|consen 480 IKGHRRTYVGAMPGKIIQCLKKVKTE---NPLILIDEVDKLGS 519 (906)
T ss_pred hcccceeeeccCChHHHHHHHhhCCC---CceEEeehhhhhCC
Confidence 334344444 4699999999874332 23899999998873
No 451
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=91.83 E-value=0.36 Score=44.75 Aligned_cols=18 Identities=33% Similarity=0.252 Sum_probs=16.4
Q ss_pred hcCCCeEEEccCCCchhH
Q 010709 156 LSGRDLLGCAETGSGKTA 173 (503)
Q Consensus 156 ~~~~~vii~~~TGsGKTl 173 (503)
-.|+.++|.|+.|+|||+
T Consensus 14 ~~Gqr~~I~G~~G~GKTT 31 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTT 31 (249)
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 478889999999999997
No 452
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=91.83 E-value=0.29 Score=50.21 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=25.3
Q ss_pred cHHHHHHHHHHhcCC--CeEEEccCCCchhHHhHHHHHHH
Q 010709 145 TSIQAQAMPVALSGR--DLLGCAETGSGKTAAFTIPMIQH 182 (503)
Q Consensus 145 ~~~Q~~~i~~i~~~~--~vii~~~TGsGKTl~~~lp~l~~ 182 (503)
.+-|.+.+..+.... -++++||||||||+.. ..++..
T Consensus 227 ~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~ 265 (486)
T TIGR02533 227 SPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSR 265 (486)
T ss_pred CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhc
Confidence 455677777666543 3789999999999853 334444
No 453
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=91.82 E-value=0.27 Score=47.39 Aligned_cols=20 Identities=35% Similarity=0.449 Sum_probs=17.1
Q ss_pred HhcCCCeEEEccCCCchhHH
Q 010709 155 ALSGRDLLGCAETGSGKTAA 174 (503)
Q Consensus 155 i~~~~~vii~~~TGsGKTl~ 174 (503)
+..+.+++++|+||+|||+.
T Consensus 141 v~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred hhCCCEEEEECCCCCCHHHH
Confidence 34678899999999999983
No 454
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=91.74 E-value=0.32 Score=51.02 Aligned_cols=38 Identities=24% Similarity=0.195 Sum_probs=26.2
Q ss_pred cHHHHHHHHHHhcC--CCeEEEccCCCchhHHhHHHHHHHH
Q 010709 145 TSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHC 183 (503)
Q Consensus 145 ~~~Q~~~i~~i~~~--~~vii~~~TGsGKTl~~~lp~l~~~ 183 (503)
.+.|.+.+..+... .-++++||||||||+.. ..++.++
T Consensus 301 ~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 301 EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 45566667665543 44899999999999864 4455554
No 455
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.71 E-value=1 Score=37.95 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=14.3
Q ss_pred eEEEccCCCchhHHhHH
Q 010709 161 LLGCAETGSGKTAAFTI 177 (503)
Q Consensus 161 vii~~~TGsGKTl~~~l 177 (503)
.|+.||.|+|||..|..
T Consensus 5 ~IvaG~NGsGKstv~~~ 21 (187)
T COG4185 5 DIVAGPNGSGKSTVYAS 21 (187)
T ss_pred EEEecCCCCCceeeeec
Confidence 57889999999997754
No 456
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=91.70 E-value=0.27 Score=43.96 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=16.2
Q ss_pred eEEEccCCCchhHHhHHHHHHHH
Q 010709 161 LLGCAETGSGKTAAFTIPMIQHC 183 (503)
Q Consensus 161 vii~~~TGsGKTl~~~lp~l~~~ 183 (503)
++++||||||||+.. ..++.++
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHh
Confidence 789999999999853 3344443
No 457
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=91.68 E-value=0.5 Score=49.11 Aligned_cols=74 Identities=16% Similarity=0.249 Sum_probs=62.1
Q ss_pred CcEEEEEcchhhHHHHHH----HHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEc-cccccCCCCCCCCEEEE
Q 010709 375 PLTIVFVERKTRCDEVSE----ALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT-DVASRGLDVMGVAHVVN 448 (503)
Q Consensus 375 ~~~lIF~~~~~~~~~l~~----~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~~Gldip~v~~VI~ 448 (503)
.++..-++|.--|++.+. .|...|+.|..+.|.+..++|.++++...+|+++++|.| -++...+++.++.+||.
T Consensus 312 ~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVIi 390 (677)
T COG1200 312 YQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVII 390 (677)
T ss_pred CeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEEE
Confidence 358889999666655544 455569999999999999999999999999999999999 56678899988888774
No 458
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=91.66 E-value=1.4 Score=44.85 Aligned_cols=38 Identities=16% Similarity=0.234 Sum_probs=23.3
Q ss_pred cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 010709 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~ 201 (503)
.|.-++|.|++|+|||... +-+..+.... .+..++++.
T Consensus 194 ~G~l~vi~g~pg~GKT~~~-l~~a~~~a~~------~g~~vl~~S 231 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFA-LNIAENAAIK------EGKPVAFFS 231 (434)
T ss_pred CCeEEEEEeCCCCChHHHH-HHHHHHHHHh------CCCeEEEEe
Confidence 3445899999999999744 3333333321 134566665
No 459
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=91.61 E-value=0.41 Score=48.18 Aligned_cols=69 Identities=19% Similarity=0.289 Sum_probs=54.9
Q ss_pred cEEEEEcchhhHHHHHHHHHHC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-----ccccCC----CCCC
Q 010709 376 LTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-----VASRGL----DVMG 442 (503)
Q Consensus 376 ~~lIF~~~~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~Gl----dip~ 442 (503)
-.|||.++++.+-++.++|... ++.+..+.|||....+++++++ ...|+|||. +++.+= ++..
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATPGRlweli~e~n~~l~~~k~ 340 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATPGRLWELIEEDNTHLGNFKK 340 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecchHHHHHHHhhhhhhhhhhh
Confidence 3899999999999999999764 8899999999999999999987 678999994 222221 3556
Q ss_pred CCEEEE
Q 010709 443 VAHVVN 448 (503)
Q Consensus 443 v~~VI~ 448 (503)
++++|.
T Consensus 341 vkcLVl 346 (731)
T KOG0347|consen 341 VKCLVL 346 (731)
T ss_pred ceEEEE
Confidence 666553
No 460
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=91.57 E-value=0.62 Score=48.69 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=14.1
Q ss_pred eEEEccCCCchhHHhH
Q 010709 161 LLGCAETGSGKTAAFT 176 (503)
Q Consensus 161 vii~~~TGsGKTl~~~ 176 (503)
.+++||.|+|||.++.
T Consensus 41 yLf~Gp~G~GKTt~Ar 56 (563)
T PRK06647 41 YIFSGPRGVGKTSSAR 56 (563)
T ss_pred EEEECCCCCCHHHHHH
Confidence 7899999999998653
No 461
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=91.55 E-value=1.6 Score=39.84 Aligned_cols=22 Identities=36% Similarity=0.342 Sum_probs=17.2
Q ss_pred HhcCC-CeEEEccCCCchhHHhH
Q 010709 155 ALSGR-DLLGCAETGSGKTAAFT 176 (503)
Q Consensus 155 i~~~~-~vii~~~TGsGKTl~~~ 176 (503)
+..|+ -+.++|+-|||||...-
T Consensus 47 i~d~qg~~~vtGevGsGKTv~~R 69 (269)
T COG3267 47 IADGQGILAVTGEVGSGKTVLRR 69 (269)
T ss_pred HhcCCceEEEEecCCCchhHHHH
Confidence 34555 58999999999998654
No 462
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.53 E-value=0.16 Score=49.22 Aligned_cols=16 Identities=38% Similarity=0.532 Sum_probs=14.4
Q ss_pred CCeEEEccCCCchhHH
Q 010709 159 RDLLGCAETGSGKTAA 174 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~ 174 (503)
+|++..||+|+|||+.
T Consensus 385 RNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMF 400 (630)
T ss_pred hheeeeCCCCCCchHH
Confidence 5899999999999974
No 463
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.45 E-value=0.8 Score=46.13 Aligned_cols=69 Identities=16% Similarity=0.189 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHH----HHh---cC-----CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCC
Q 010709 126 MCLHPSIMKDIEFHEYTRPTSIQAQAMP----VAL---SG-----RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGD 193 (503)
Q Consensus 126 ~~l~~~l~~~l~~~~~~~~~~~Q~~~i~----~i~---~~-----~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~ 193 (503)
++.+++-++.....|.-.-.+.-.+.+. .+. +. ..+++.||.|+|||.. .+-+... ..
T Consensus 494 FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaL--AA~iA~~--------S~ 563 (744)
T KOG0741|consen 494 FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTAL--AAKIALS--------SD 563 (744)
T ss_pred cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHH--HHHHHhh--------cC
Confidence 3666666666666654332222222221 111 11 2489999999999953 2222221 23
Q ss_pred CCeEEEEcccH
Q 010709 194 GPLALVLAPTR 204 (503)
Q Consensus 194 ~~~~lil~Ptr 204 (503)
.|.+=++.|..
T Consensus 564 FPFvKiiSpe~ 574 (744)
T KOG0741|consen 564 FPFVKIISPED 574 (744)
T ss_pred CCeEEEeChHH
Confidence 57777777764
No 464
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=91.45 E-value=0.093 Score=45.87 Aligned_cols=44 Identities=25% Similarity=0.279 Sum_probs=29.2
Q ss_pred HHhhCCCcEEEECcHHHHHHHHcCCC--CCCCccEEEecchhHHhh
Q 010709 240 SELRGGVSIVVATPGRFLDHLQQGNT--SLSRVSFVILDEADRMLD 283 (503)
Q Consensus 240 ~~~~~~~~Ilv~Tp~~l~~~l~~~~~--~l~~~~~vViDEaH~l~~ 283 (503)
+.....++|+|++...|++......+ ...+-.+|||||||.+.+
T Consensus 114 r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 44456699999999988765443322 123457999999998754
No 465
>PHA00350 putative assembly protein
Probab=91.45 E-value=1.7 Score=43.10 Aligned_cols=17 Identities=18% Similarity=0.069 Sum_probs=14.0
Q ss_pred eEEEccCCCchhHHhHH
Q 010709 161 LLGCAETGSGKTAAFTI 177 (503)
Q Consensus 161 vii~~~TGsGKTl~~~l 177 (503)
.++.|..|||||+.++-
T Consensus 4 ~l~tG~pGSGKT~~aV~ 20 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVV 20 (399)
T ss_pred EEEecCCCCchhHHHHH
Confidence 47899999999986654
No 466
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=91.41 E-value=1.4 Score=44.85 Aligned_cols=145 Identities=13% Similarity=0.091 Sum_probs=81.4
Q ss_pred CCcHHHHHHHHHHh------cC----CCeEEEccCCCchhHHhH-HHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHH
Q 010709 143 RPTSIQAQAMPVAL------SG----RDLLGCAETGSGKTAAFT-IPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIE 211 (503)
Q Consensus 143 ~~~~~Q~~~i~~i~------~~----~~vii~~~TGsGKTl~~~-lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~ 211 (503)
.+-|+|.-.+-.++ .| +.++|..|=+-|||..+. +.+...+..+ ..+..+.|++|+.+-+.+.+
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~-----~~~~~~~i~A~s~~qa~~~F 135 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW-----RSGAGIYILAPSVEQAANSF 135 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-----hcCCcEEEEeccHHHHHHhh
Confidence 56789999998887 12 247899999999997433 2122222222 34677899999999888888
Q ss_pred HHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHH---HHHHHHc--CCCCCCCccEEEecchhHHhhCCC
Q 010709 212 KEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGR---FLDHLQQ--GNTSLSRVSFVILDEADRMLDMGF 286 (503)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~---l~~~l~~--~~~~l~~~~~vViDEaH~l~~~~~ 286 (503)
..++.......++... .....+-...+... ....+.. +...-.+..+.|+||.|...+.+
T Consensus 136 ~~ar~mv~~~~~l~~~--------------~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~- 200 (546)
T COG4626 136 NPARDMVKRDDDLRDL--------------CNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE- 200 (546)
T ss_pred HHHHHHHHhCcchhhh--------------hccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH-
Confidence 8887766443211111 11111111122211 1222222 12344567899999999765441
Q ss_pred HHHHHHHHHhC--CCCCcEEEEEe
Q 010709 287 EPQIREVMQNL--PDKHQTLLFSA 308 (503)
Q Consensus 287 ~~~~~~il~~~--~~~~q~i~~SA 308 (503)
..+..+..-+ +++.+++..|.
T Consensus 201 -~~~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 201 -DMYSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred -HHHHHHHhhhccCcCceEEEEec
Confidence 3333333322 34555666664
No 467
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=91.38 E-value=0.42 Score=45.94 Aligned_cols=43 Identities=23% Similarity=0.233 Sum_probs=27.7
Q ss_pred cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHH
Q 010709 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELA 207 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La 207 (503)
.|+-+.|.||+|+|||+.+ +.++...... +..++++-.-..+-
T Consensus 54 ~G~iteI~G~~GsGKTtLa-L~~~~~~~~~-------g~~v~yId~E~~~~ 96 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLA-LHAIAEAQKA-------GGTAAFIDAEHALD 96 (321)
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHHHHHc-------CCcEEEEcccchhH
Confidence 4456899999999999865 3344443332 56677775544443
No 468
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=91.37 E-value=0.3 Score=53.49 Aligned_cols=61 Identities=21% Similarity=0.289 Sum_probs=36.9
Q ss_pred EECcHHHHHHHHcCCCCCCCccEEEecchhHHhh----------CCCHHHHHHHHHhCCCCCcEEEEEeeCC
Q 010709 250 VATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD----------MGFEPQIREVMQNLPDKHQTLLFSATMP 311 (503)
Q Consensus 250 v~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~----------~~~~~~~~~il~~~~~~~q~i~~SAT~~ 311 (503)
|+.+++=++++... ..-.....+.+||.+-+.- ......+..++.-++...|+++.+||..
T Consensus 345 vgEaERqlrllFee-A~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnR 415 (1080)
T KOG0732|consen 345 VGEAERQLRLLFEE-AQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNR 415 (1080)
T ss_pred cCcHHHHHHHHHHH-HhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCC
Confidence 55666555555431 2234577899999992211 1123344555556677889999999963
No 469
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=91.25 E-value=1.8 Score=45.45 Aligned_cols=94 Identities=23% Similarity=0.331 Sum_probs=54.3
Q ss_pred CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHH
Q 010709 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQ 238 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (503)
.=++++||+|.|||- |+..+++.+.+- -+-.-.||.....+
T Consensus 351 pILcLVGPPGVGKTS--------------------------------LgkSIA~al~Rk-------fvR~sLGGvrDEAE 391 (782)
T COG0466 351 PILCLVGPPGVGKTS--------------------------------LGKSIAKALGRK-------FVRISLGGVRDEAE 391 (782)
T ss_pred cEEEEECCCCCCchh--------------------------------HHHHHHHHhCCC-------EEEEecCccccHHH
Confidence 348899999999994 334444444321 12334456544433
Q ss_pred HHHhhCCCcEEE-ECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhC
Q 010709 239 RSELRGGVSIVV-ATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL 297 (503)
Q Consensus 239 ~~~~~~~~~Ilv-~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~ 297 (503)
+++.-+-.| +-||++.+-+.+.... --++++||+|.|.....+.--..+|.-+
T Consensus 392 ---IRGHRRTYIGamPGrIiQ~mkka~~~---NPv~LLDEIDKm~ss~rGDPaSALLEVL 445 (782)
T COG0466 392 ---IRGHRRTYIGAMPGKIIQGMKKAGVK---NPVFLLDEIDKMGSSFRGDPASALLEVL 445 (782)
T ss_pred ---hccccccccccCChHHHHHHHHhCCc---CCeEEeechhhccCCCCCChHHHHHhhc
Confidence 333333334 4699999888764321 2389999999987654333334444433
No 470
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=91.23 E-value=1.3 Score=43.71 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=13.7
Q ss_pred CeEEEccCCCchhHHh
Q 010709 160 DLLGCAETGSGKTAAF 175 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~ 175 (503)
..++.||.|+|||..+
T Consensus 38 ~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIA 53 (355)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999754
No 471
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=91.13 E-value=1.1 Score=44.18 Aligned_cols=18 Identities=33% Similarity=0.302 Sum_probs=16.3
Q ss_pred cCCCeEEEccCCCchhHH
Q 010709 157 SGRDLLGCAETGSGKTAA 174 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~ 174 (503)
.|+.++|.||+|+|||+.
T Consensus 167 ~Gq~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVL 184 (415)
T ss_pred CCCEEEEECCCCCChhHH
Confidence 678899999999999974
No 472
>PRK14701 reverse gyrase; Provisional
Probab=91.12 E-value=0.73 Score=54.11 Aligned_cols=59 Identities=19% Similarity=0.258 Sum_probs=52.6
Q ss_pred CcEEEEEcchhhHHHHHHHHHHC------CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc
Q 010709 375 PLTIVFVERKTRCDEVSEALVAE------GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDV 433 (503)
Q Consensus 375 ~~~lIF~~~~~~~~~l~~~L~~~------~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~ 433 (503)
.++||.+|+++-+.++++.|+.. ++.+..+||+++..++.++++.+.+|+.+|||+|.-
T Consensus 123 ~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 123 KKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 46999999999999999998863 467889999999999999999999999999999963
No 473
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=91.12 E-value=0.86 Score=48.18 Aligned_cols=34 Identities=32% Similarity=0.444 Sum_probs=23.6
Q ss_pred CCCccEEEecchhHHhhCCCHHHHHHHHHhCCCC
Q 010709 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDK 300 (503)
Q Consensus 267 l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~ 300 (503)
+++-.++|+|||..-+|......+.+.+..+.++
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~ 514 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKG 514 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcC
Confidence 4555788889988777776666677666655444
No 474
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.11 E-value=6.4 Score=35.13 Aligned_cols=44 Identities=14% Similarity=0.226 Sum_probs=28.6
Q ss_pred CCCccEEEecchhHHhhCCCHHHHHHHH---HhCCCCCcEEEEEeeC
Q 010709 267 LSRVSFVILDEADRMLDMGFEPQIREVM---QNLPDKHQTLLFSATM 310 (503)
Q Consensus 267 l~~~~~vViDEaH~l~~~~~~~~~~~il---~~~~~~~q~i~~SAT~ 310 (503)
..+-+++|||=...+.-.+-...+...+ +.+-..-++|++|+-+
T Consensus 121 ~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilTvhp 167 (235)
T COG2874 121 RWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILTVHP 167 (235)
T ss_pred hhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEEEeCh
Confidence 5667899999988766554333343333 3333456799999876
No 475
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=91.10 E-value=0.76 Score=50.13 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=14.3
Q ss_pred CCeEEEccCCCchhHHh
Q 010709 159 RDLLGCAETGSGKTAAF 175 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~ 175 (503)
+.+++.||+|+|||+.+
T Consensus 488 ~giLL~GppGtGKT~la 504 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLA 504 (733)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45899999999999743
No 476
>COG1485 Predicted ATPase [General function prediction only]
Probab=91.02 E-value=3.7 Score=39.48 Aligned_cols=110 Identities=15% Similarity=0.198 Sum_probs=60.8
Q ss_pred CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHH
Q 010709 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQ 238 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (503)
+-+-+.|+-|.|||. ++-++-..+--. . -.-++.-.-...+.+++..+- |.
T Consensus 66 ~GlYl~GgVGrGKT~--LMD~Fy~~lp~~-----~----k~R~HFh~FM~~vH~~l~~l~------------g~------ 116 (367)
T COG1485 66 RGLYLWGGVGRGKTM--LMDLFYESLPGE-----R----KRRLHFHRFMARVHQRLHTLQ------------GQ------ 116 (367)
T ss_pred ceEEEECCCCccHHH--HHHHHHhhCCcc-----c----cccccHHHHHHHHHHHHHHHc------------CC------
Confidence 458899999999995 454444322210 0 122344556666666666553 11
Q ss_pred HHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHh-CCCCCcEEEEEeeCCHHHH
Q 010709 239 RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN-LPDKHQTLLFSATMPVEIE 315 (503)
Q Consensus 239 ~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~-~~~~~q~i~~SAT~~~~~~ 315 (503)
.+.+ ..+.+.+ ..+.+++.|||+| +.+-+-.-.+.+++.. +...+.+++.|-|.|+++.
T Consensus 117 -------~dpl----~~iA~~~------~~~~~vLCfDEF~-VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~LY 176 (367)
T COG1485 117 -------TDPL----PPIADEL------AAETRVLCFDEFE-VTDIADAMILGRLLEALFARGVVLVATSNTAPDNLY 176 (367)
T ss_pred -------CCcc----HHHHHHH------HhcCCEEEeeeee-ecChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHhc
Confidence 1111 1111222 3457899999998 2222212224444443 3457888999999987754
No 477
>PRK09354 recA recombinase A; Provisional
Probab=90.92 E-value=0.59 Score=45.39 Aligned_cols=42 Identities=24% Similarity=0.191 Sum_probs=27.6
Q ss_pred CCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHH
Q 010709 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELA 207 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La 207 (503)
|+-+.|.||+|+|||+..+. ++...... +..++|+-.-..+-
T Consensus 60 G~IteI~G~~GsGKTtLal~-~~~~~~~~-------G~~~~yId~E~s~~ 101 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALH-AIAEAQKA-------GGTAAFIDAEHALD 101 (349)
T ss_pred CeEEEEECCCCCCHHHHHHH-HHHHHHHc-------CCcEEEECCccchH
Confidence 45688999999999986543 33333332 56678887555444
No 478
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=90.91 E-value=2.8 Score=46.09 Aligned_cols=18 Identities=33% Similarity=0.237 Sum_probs=14.9
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
+..+++.||+|+|||..+
T Consensus 347 ~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 345999999999999743
No 479
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=90.77 E-value=0.2 Score=50.82 Aligned_cols=45 Identities=16% Similarity=0.188 Sum_probs=29.6
Q ss_pred CCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHH
Q 010709 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIE 315 (503)
Q Consensus 267 l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~ 315 (503)
..+-++.|+|||-..++.+.+..+.+.++... +-++|---.+.+.
T Consensus 586 y~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~g----iT~iSVgHRkSL~ 630 (659)
T KOG0060|consen 586 YHKPKFAILDECTSAVTEDVEGALYRKCREMG----ITFISVGHRKSLW 630 (659)
T ss_pred hcCCceEEeechhhhccHHHHHHHHHHHHHcC----CeEEEeccHHHHH
Confidence 45678899999998777766777777777654 4444444333333
No 480
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.76 E-value=1.2 Score=47.00 Aligned_cols=17 Identities=35% Similarity=0.503 Sum_probs=14.4
Q ss_pred CCeEEEccCCCchhHHh
Q 010709 159 RDLLGCAETGSGKTAAF 175 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~ 175 (503)
+-+++.||+|+|||+.+
T Consensus 111 ~illL~GP~GsGKTTl~ 127 (637)
T TIGR00602 111 RILLITGPSGCGKSTTI 127 (637)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 34999999999999854
No 481
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=90.69 E-value=0.2 Score=53.21 Aligned_cols=50 Identities=24% Similarity=0.215 Sum_probs=37.6
Q ss_pred CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q 010709 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 218 (503)
.+++++||||+|||..+++|-+... +..+||+=|.-|+........++.+
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~----------~gS~VV~DpKGE~~~~Ta~~R~~~G 189 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF----------KGSVIALDVKGELFELTSRARKASG 189 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC----------CCCEEEEeCCchHHHHHHHHHHhCC
Confidence 4799999999999999999987642 2346777788888776665555543
No 482
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.63 E-value=1.6 Score=43.76 Aligned_cols=69 Identities=22% Similarity=0.385 Sum_probs=53.4
Q ss_pred cEEEEEcchhhHHHHHHH---H-HHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc--ccc----cCCCCCCCCE
Q 010709 376 LTIVFVERKTRCDEVSEA---L-VAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD--VAS----RGLDVMGVAH 445 (503)
Q Consensus 376 ~~lIF~~~~~~~~~l~~~---L-~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~--~~~----~Gldip~v~~ 445 (503)
-.+|.|++++.|.++... | +..|++++++|||.+..++..-++ -...++|||. ++. .++|+..+.+
T Consensus 298 i~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~rvS~ 373 (731)
T KOG0339|consen 298 IGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLSRVSY 373 (731)
T ss_pred eEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhcccceeeeE
Confidence 368889999988877544 4 345899999999999988887776 3578999994 322 4788988888
Q ss_pred EEE
Q 010709 446 VVN 448 (503)
Q Consensus 446 VI~ 448 (503)
+|.
T Consensus 374 LV~ 376 (731)
T KOG0339|consen 374 LVL 376 (731)
T ss_pred EEE
Confidence 774
No 483
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=90.58 E-value=0.73 Score=43.15 Aligned_cols=37 Identities=11% Similarity=0.046 Sum_probs=24.0
Q ss_pred cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 010709 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~ 201 (503)
.|.-++|.|++|+|||+..+-.+. .... .+.+++|+.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~-~~a~-------~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAV-TQAS-------RGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH-HHHh-------CCCcEEEEE
Confidence 455699999999999975433222 2222 245677777
No 484
>PRK04328 hypothetical protein; Provisional
Probab=90.53 E-value=0.54 Score=43.76 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=31.8
Q ss_pred cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q 010709 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 218 (503)
.|..++|.|++|+|||+..+-.+... +.. +.+++|+. +.+-..++.+.++.++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~-~~~-------ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG-LQM-------GEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-Hhc-------CCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 45669999999999997543333332 222 45567776 3344445555555554
No 485
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=90.44 E-value=0.27 Score=46.17 Aligned_cols=27 Identities=26% Similarity=0.251 Sum_probs=21.5
Q ss_pred HHHHHHHhcCCCeEEEccCCCchhHHh
Q 010709 149 AQAMPVALSGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 149 ~~~i~~i~~~~~vii~~~TGsGKTl~~ 175 (503)
.+++..+..|+++++.||+|+|||..+
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHHH
Confidence 344555668889999999999999854
No 486
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=90.42 E-value=0.39 Score=43.98 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=23.7
Q ss_pred CeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcc
Q 010709 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 202 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~P 202 (503)
+++|.|++|||||.. ++-++..+... ...+++++|
T Consensus 15 r~viIG~sGSGKT~l-i~~lL~~~~~~-------f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTL-IKSLLYYLRHK-------FDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHH-HHHHHHhhccc-------CCEEEEEec
Confidence 689999999999973 45555443332 355666667
No 487
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=90.38 E-value=2.1 Score=39.17 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=14.6
Q ss_pred CCCeEEEccCCCchhHH
Q 010709 158 GRDLLGCAETGSGKTAA 174 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~ 174 (503)
-+.++..||+|+|||+.
T Consensus 205 PKGvLmYGPPGTGKTlm 221 (424)
T KOG0652|consen 205 PKGVLMYGPPGTGKTLM 221 (424)
T ss_pred CCceEeeCCCCCcHHHH
Confidence 35699999999999974
No 488
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=90.35 E-value=0.37 Score=48.03 Aligned_cols=45 Identities=31% Similarity=0.459 Sum_probs=30.0
Q ss_pred hcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHH
Q 010709 156 LSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQ 208 (503)
Q Consensus 156 ~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~ 208 (503)
...+++++.|.||+|||.+ +-.++..+..+ +.+++|.=|.-+...
T Consensus 13 ~e~~~~li~G~~GsGKT~~-i~~ll~~~~~~-------g~~~iI~D~kg~~~~ 57 (386)
T PF10412_consen 13 SENRHILIIGATGSGKTQA-IRHLLDQIRAR-------GDRAIIYDPKGEFTE 57 (386)
T ss_dssp GGGG-EEEEE-TTSSHHHH-HHHHHHHHHHT-------T-EEEEEEETTHHHH
T ss_pred hhhCcEEEECCCCCCHHHH-HHHHHHHHHHc-------CCEEEEEECCchHHH
Confidence 4678899999999999974 46777776664 445666666655544
No 489
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=90.25 E-value=1.2 Score=49.36 Aligned_cols=74 Identities=14% Similarity=0.230 Sum_probs=65.9
Q ss_pred CcEEEEEcchhhHHHHHHHHHHC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEc-cccccCCCCCCCCEEEE
Q 010709 375 PLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVAT-DVASRGLDVMGVAHVVN 448 (503)
Q Consensus 375 ~~~lIF~~~~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~~Gldip~v~~VI~ 448 (503)
+.+.|.++|---|++.++.|+++ +++|..+..-.+.+++.++++..++|+++|||.| .++..++-+.++..||.
T Consensus 644 KQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlII 722 (1139)
T COG1197 644 KQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLII 722 (1139)
T ss_pred CeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEEE
Confidence 56999999998888888888765 6778888888899999999999999999999999 78999999999998884
No 490
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=90.17 E-value=3.5 Score=41.94 Aligned_cols=71 Identities=15% Similarity=0.286 Sum_probs=53.8
Q ss_pred CCcEEEEEcchhhHHHHHHHHHH----CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc------ccccCCCCCCC
Q 010709 374 FPLTIVFVERKTRCDEVSEALVA----EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD------VASRGLDVMGV 443 (503)
Q Consensus 374 ~~~~lIF~~~~~~~~~l~~~L~~----~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~------~~~~Gldip~v 443 (503)
..++||.+++++.+.++++.+.. .++.+..++|+.....+...+ .+..+|||+|. +....+++.++
T Consensus 73 ~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~~~~~~~~~~~v 148 (434)
T PRK11192 73 PPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVF----SENQDIVVATPGRLLQYIKEENFDCRAV 148 (434)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHh----cCCCCEEEEChHHHHHHHHcCCcCcccC
Confidence 35799999999999888776654 478899999999887766554 35678999995 12245677888
Q ss_pred CEEEE
Q 010709 444 AHVVN 448 (503)
Q Consensus 444 ~~VI~ 448 (503)
++||.
T Consensus 149 ~~lVi 153 (434)
T PRK11192 149 ETLIL 153 (434)
T ss_pred CEEEE
Confidence 88774
No 491
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.12 E-value=1.6 Score=44.80 Aligned_cols=58 Identities=21% Similarity=0.354 Sum_probs=53.8
Q ss_pred CcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 010709 375 PLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD 432 (503)
Q Consensus 375 ~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~ 432 (503)
+.+||.+++++.+....+.|...|+.+..++++.+..++..++.....|..+++++|.
T Consensus 52 ~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TP 109 (470)
T TIGR00614 52 GITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTP 109 (470)
T ss_pred CcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 3589999999999999999999999999999999999999999999999999999995
No 492
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=90.07 E-value=1.1 Score=37.78 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=22.6
Q ss_pred CCCccEEEecchhHHhhCCCHHHHHHHHHhC
Q 010709 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNL 297 (503)
Q Consensus 267 l~~~~~vViDEaH~l~~~~~~~~~~~il~~~ 297 (503)
..+-+++++||.-.-++......+.+++..+
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEY 116 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHc
Confidence 4466799999998766665566677777766
No 493
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.05 E-value=2.7 Score=43.64 Aligned_cols=56 Identities=16% Similarity=0.223 Sum_probs=34.2
Q ss_pred CCCcCCcccCCCCHHHHHHHHH---CCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHh
Q 010709 117 PAPIESFTDMCLHPSIMKDIEF---HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 117 ~~~~~~~~~~~l~~~l~~~l~~---~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~ 175 (503)
..+--+|++.+=-+.+.+.|+. +....|-.+..-.+ -.-+-|++.||+|+|||+++
T Consensus 427 e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi---~ppkGVLlyGPPGC~KT~lA 485 (693)
T KOG0730|consen 427 EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGI---SPPKGVLLYGPPGCGKTLLA 485 (693)
T ss_pred cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcC---CCCceEEEECCCCcchHHHH
Confidence 4455678888755777777652 22233322222221 12356999999999999854
No 494
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=90.04 E-value=8.5 Score=36.56 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=20.4
Q ss_pred hhhHHHHHHHHHHCCCeEEEEcCCCC
Q 010709 384 KTRCDEVSEALVAEGLHAVALHGGRN 409 (503)
Q Consensus 384 ~~~~~~l~~~L~~~~~~v~~lh~~~~ 409 (503)
...++.|++.| +.++.|...|-++.
T Consensus 260 V~~~e~l~~~l-~~~~~v~~~Hrd~~ 284 (288)
T PRK05416 260 VAIAERLAERL-SKGYNVQVRHRDLE 284 (288)
T ss_pred HHHHHHHHHHH-hCCCcEEEEeCccc
Confidence 56788999999 46899999998875
No 495
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=90.00 E-value=1.4 Score=44.95 Aligned_cols=53 Identities=21% Similarity=0.197 Sum_probs=33.1
Q ss_pred cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q 010709 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 218 (503)
.|.-+++.|++|+|||+..+. +...... .+.+++|+..- +-..|+..+...++
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq-~a~~~a~-------~g~kvlYvs~E-Es~~qi~~ra~rlg 145 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQ-VACQLAK-------NQMKVLYVSGE-ESLQQIKMRAIRLG 145 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHH-HHHHHHh-------cCCcEEEEECc-CCHHHHHHHHHHcC
Confidence 345699999999999985432 3233222 13568888754 44566666665553
No 496
>CHL00176 ftsH cell division protein; Validated
Probab=90.00 E-value=2.2 Score=45.43 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=14.6
Q ss_pred CCeEEEccCCCchhHHh
Q 010709 159 RDLLGCAETGSGKTAAF 175 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~ 175 (503)
+.+++.||+|+|||+.+
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46999999999999743
No 497
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=89.79 E-value=0.27 Score=43.15 Aligned_cols=41 Identities=20% Similarity=0.388 Sum_probs=26.7
Q ss_pred CCccEEEecchhHHhhCCCHHHHHHHHHhCCC-CCcEEEEEe
Q 010709 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPD-KHQTLLFSA 308 (503)
Q Consensus 268 ~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~-~~q~i~~SA 308 (503)
.+.+++++||...-++......+.+.+..+.. ..++|+.|-
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 56789999999976666555566666655433 355555543
No 498
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=89.71 E-value=1.9 Score=41.76 Aligned_cols=46 Identities=24% Similarity=0.327 Sum_probs=32.5
Q ss_pred CCccEEEecchhHHhhCC--CHHHHHHHHHhCCCCCcEEEEEeeCCHH
Q 010709 268 SRVSFVILDEADRMLDMG--FEPQIREVMQNLPDKHQTLLFSATMPVE 313 (503)
Q Consensus 268 ~~~~~vViDEaH~l~~~~--~~~~~~~il~~~~~~~q~i~~SAT~~~~ 313 (503)
+..-++|+|-|+.+-+++ ..+.+.++-..++.+.-.|.+|+++.+.
T Consensus 114 d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 114 DQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEK 161 (438)
T ss_pred CceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHH
Confidence 456689999999988775 3344555555556566678889998654
No 499
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=89.53 E-value=0.59 Score=48.92 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=15.8
Q ss_pred cCCCeEEEccCCCchhH
Q 010709 157 SGRDLLGCAETGSGKTA 173 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl 173 (503)
.|+-+.++||+|+|||+
T Consensus 360 ~G~~vaIvG~SGsGKST 376 (529)
T TIGR02868 360 PGERVAILGPSGSGKST 376 (529)
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67889999999999998
No 500
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=89.52 E-value=2.9 Score=39.23 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=18.5
Q ss_pred HHHHHHHhcC---CCeEEEccCCCchhH
Q 010709 149 AQAMPVALSG---RDLLGCAETGSGKTA 173 (503)
Q Consensus 149 ~~~i~~i~~~---~~vii~~~TGsGKTl 173 (503)
...++.+... +++++.||+|+|||+
T Consensus 99 ~~~l~~l~~~~~~~~~~i~g~~g~GKtt 126 (270)
T TIGR02858 99 DKLLPYLVRNNRVLNTLIISPPQCGKTT 126 (270)
T ss_pred HHHHHHHHhCCCeeEEEEEcCCCCCHHH
Confidence 3345555543 578999999999998
Done!