Query 010709
Match_columns 503
No_of_seqs 351 out of 2862
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 12:36:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010709.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010709hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 5.2E-61 1.8E-65 485.3 46.6 343 115-468 50-394 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 1.5E-56 5.1E-61 452.2 45.4 345 115-468 9-370 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 6.4E-56 2.2E-60 446.6 39.7 336 118-468 34-370 (410)
4 3eiq_A Eukaryotic initiation f 100.0 2E-54 7E-59 436.2 36.3 337 117-468 36-374 (414)
5 1s2m_A Putative ATP-dependent 100.0 1.9E-53 6.3E-58 427.2 41.2 334 119-468 19-352 (400)
6 1xti_A Probable ATP-dependent 100.0 3.2E-53 1.1E-57 424.2 39.9 334 121-468 8-344 (391)
7 3fht_A ATP-dependent RNA helic 100.0 7.4E-53 2.5E-57 424.5 38.9 337 115-468 19-366 (412)
8 3pey_A ATP-dependent RNA helic 100.0 1.6E-52 5.4E-57 419.6 38.6 331 119-468 3-343 (395)
9 1hv8_A Putative ATP-dependent 100.0 1.2E-51 4.1E-56 409.0 41.7 327 120-468 5-332 (367)
10 3sqw_A ATP-dependent RNA helic 100.0 3.4E-52 1.2E-56 436.4 36.0 336 128-468 28-385 (579)
11 1fuu_A Yeast initiation factor 100.0 2.3E-53 8E-58 425.6 24.6 337 116-468 16-353 (394)
12 3i5x_A ATP-dependent RNA helic 100.0 1.5E-51 5.1E-56 431.3 37.4 336 128-468 79-436 (563)
13 3fmp_B ATP-dependent RNA helic 100.0 1.5E-53 5.2E-58 437.5 21.7 334 118-468 89-433 (479)
14 2z0m_A 337AA long hypothetical 100.0 1E-49 3.6E-54 390.4 37.9 310 128-468 1-310 (337)
15 2v1x_A ATP-dependent DNA helic 100.0 1.1E-49 3.7E-54 413.8 30.7 320 123-468 23-361 (591)
16 3fho_A ATP-dependent RNA helic 100.0 8.2E-51 2.8E-55 418.4 21.0 357 90-468 91-457 (508)
17 1oyw_A RECQ helicase, ATP-depe 100.0 6.6E-49 2.2E-53 404.1 31.3 317 121-468 2-330 (523)
18 3oiy_A Reverse gyrase helicase 100.0 2.2E-47 7.5E-52 384.5 25.6 302 132-469 10-349 (414)
19 2va8_A SSO2462, SKI2-type heli 100.0 1.4E-45 4.9E-50 395.8 31.9 322 121-468 8-393 (715)
20 3l9o_A ATP-dependent RNA helic 100.0 6.4E-46 2.2E-50 408.8 25.1 321 121-469 162-583 (1108)
21 2zj8_A DNA helicase, putative 100.0 8E-46 2.7E-50 397.6 23.6 318 122-468 2-372 (720)
22 4a2p_A RIG-I, retinoic acid in 100.0 4.4E-45 1.5E-49 382.2 27.2 319 140-468 4-496 (556)
23 2ykg_A Probable ATP-dependent 100.0 9.9E-46 3.4E-50 397.0 20.0 325 134-468 4-504 (696)
24 2p6r_A Afuhel308 helicase; pro 100.0 7.8E-46 2.7E-50 396.6 18.8 317 122-468 2-373 (702)
25 3tbk_A RIG-I helicase domain; 100.0 4.1E-44 1.4E-48 374.8 27.5 316 142-468 3-495 (555)
26 4a2q_A RIG-I, retinoic acid in 100.0 5.8E-44 2E-48 386.8 27.7 321 138-468 243-737 (797)
27 2xgj_A ATP-dependent RNA helic 100.0 6.1E-43 2.1E-47 382.0 32.9 299 138-468 82-484 (1010)
28 4ddu_A Reverse gyrase; topoiso 100.0 9.3E-44 3.2E-48 391.5 26.3 280 138-453 74-388 (1104)
29 1wp9_A ATP-dependent RNA helic 100.0 4.8E-42 1.6E-46 353.1 31.7 311 143-468 9-463 (494)
30 1tf5_A Preprotein translocase 100.0 1.6E-41 5.3E-46 352.5 34.7 315 138-475 79-547 (844)
31 4a2w_A RIG-I, retinoic acid in 100.0 5.7E-43 1.9E-47 382.8 23.6 322 137-468 242-737 (936)
32 4gl2_A Interferon-induced heli 100.0 8.8E-44 3E-48 382.0 15.5 317 142-467 6-507 (699)
33 1gku_B Reverse gyrase, TOP-RG; 100.0 3.9E-43 1.3E-47 387.0 18.5 278 137-452 52-352 (1054)
34 4a4z_A Antiviral helicase SKI2 100.0 1.1E-41 3.7E-46 372.2 28.5 297 139-467 36-476 (997)
35 2xau_A PRE-mRNA-splicing facto 100.0 5.2E-41 1.8E-45 358.3 24.7 326 118-468 69-431 (773)
36 2fsf_A Preprotein translocase 100.0 1.4E-40 4.8E-45 344.3 26.9 313 139-474 71-584 (853)
37 4f92_B U5 small nuclear ribonu 100.0 3.6E-40 1.2E-44 375.1 31.5 329 128-468 911-1293(1724)
38 3fe2_A Probable ATP-dependent 100.0 1.3E-39 4.5E-44 302.8 29.4 236 92-332 4-239 (242)
39 2eyq_A TRCF, transcription-rep 100.0 4.5E-39 1.5E-43 356.7 35.2 309 127-468 587-909 (1151)
40 1gm5_A RECG; helicase, replica 100.0 1.7E-40 5.8E-45 351.8 20.7 307 130-468 356-684 (780)
41 4f92_B U5 small nuclear ribonu 100.0 4.6E-40 1.6E-44 374.2 25.7 320 140-468 76-458 (1724)
42 1nkt_A Preprotein translocase 100.0 9.5E-39 3.2E-43 330.9 31.1 308 138-468 107-604 (922)
43 2oca_A DAR protein, ATP-depend 100.0 8.6E-41 2.9E-45 345.5 15.5 302 142-468 112-442 (510)
44 2jlq_A Serine protease subunit 100.0 1.7E-40 5.8E-45 336.1 13.4 275 140-468 1-297 (451)
45 2whx_A Serine protease/ntpase/ 100.0 3.6E-41 1.2E-45 350.9 5.7 289 126-468 155-464 (618)
46 3o8b_A HCV NS3 protease/helica 100.0 8.1E-40 2.8E-44 337.3 12.3 263 143-467 217-502 (666)
47 2fwr_A DNA repair protein RAD2 100.0 1.2E-38 4.1E-43 326.2 17.0 281 142-469 92-439 (472)
48 3iuy_A Probable ATP-dependent 100.0 7.6E-37 2.6E-41 281.7 24.7 215 113-329 11-227 (228)
49 1wrb_A DJVLGB; RNA helicase, D 100.0 1.4E-36 4.9E-41 284.4 24.0 224 118-342 20-251 (253)
50 3h1t_A Type I site-specific re 100.0 5.7E-37 1.9E-41 322.1 22.0 308 142-470 177-545 (590)
51 2wv9_A Flavivirin protease NS2 100.0 1.9E-38 6.4E-43 332.4 10.3 280 136-468 203-519 (673)
52 1vec_A ATP-dependent RNA helic 100.0 8.7E-36 3E-40 270.3 26.5 203 121-328 3-205 (206)
53 1yks_A Genome polyprotein [con 100.0 1.3E-39 4.5E-44 328.0 1.2 253 154-468 4-285 (440)
54 2z83_A Helicase/nucleoside tri 100.0 3.2E-38 1.1E-42 319.8 11.0 260 152-468 15-299 (459)
55 2oxc_A Probable ATP-dependent 100.0 5.5E-36 1.9E-40 276.1 24.8 210 115-330 18-228 (230)
56 3ber_A Probable ATP-dependent 100.0 1.2E-35 4.2E-40 276.6 27.2 208 118-331 40-248 (249)
57 1q0u_A Bstdead; DEAD protein, 100.0 4.5E-36 1.6E-40 274.7 22.4 208 120-332 3-213 (219)
58 2v6i_A RNA helicase; membrane, 100.0 5.6E-37 1.9E-41 308.3 17.8 259 157-468 1-277 (431)
59 3fmo_B ATP-dependent RNA helic 100.0 7.5E-36 2.6E-40 285.4 24.1 207 117-331 88-298 (300)
60 2pl3_A Probable ATP-dependent 100.0 4.3E-35 1.5E-39 271.5 28.3 212 117-331 21-233 (236)
61 3bor_A Human initiation factor 100.0 7.7E-36 2.6E-40 276.4 22.8 211 115-331 24-235 (237)
62 2gxq_A Heat resistant RNA depe 100.0 5E-35 1.7E-39 265.5 25.4 204 122-330 2-205 (207)
63 1qde_A EIF4A, translation init 100.0 4.8E-35 1.7E-39 269.0 25.0 211 115-332 8-218 (224)
64 3dkp_A Probable ATP-dependent 100.0 4.9E-35 1.7E-39 272.7 23.7 230 95-333 3-243 (245)
65 3rc3_A ATP-dependent RNA helic 100.0 2.9E-35 9.9E-40 307.2 21.5 263 154-469 151-430 (677)
66 3ly5_A ATP-dependent RNA helic 100.0 1.8E-34 6.1E-39 270.9 24.7 204 121-326 52-258 (262)
67 1t6n_A Probable ATP-dependent 100.0 2E-34 6.7E-39 264.1 23.2 206 119-329 12-219 (220)
68 1z63_A Helicase of the SNF2/RA 100.0 2.4E-33 8.2E-38 289.0 24.4 298 142-468 36-438 (500)
69 3dmq_A RNA polymerase-associat 100.0 3E-34 1E-38 314.3 16.9 307 142-468 152-600 (968)
70 1z3i_X Similar to RAD54-like; 100.0 1.6E-30 5.6E-35 273.9 33.0 317 143-468 55-513 (644)
71 3mwy_W Chromo domain-containin 100.0 2.4E-31 8.3E-36 287.2 27.2 360 80-467 180-668 (800)
72 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 2E-31 6.7E-36 289.6 22.9 311 142-470 270-694 (1038)
73 3jux_A Protein translocase sub 100.0 5.6E-30 1.9E-34 259.9 30.9 301 143-468 75-574 (822)
74 2ipc_A Preprotein translocase 100.0 1.4E-25 4.6E-30 232.0 32.6 131 138-282 75-215 (997)
75 1c4o_A DNA nucleotide excision 99.9 2.9E-26 9.8E-31 241.2 25.8 154 300-468 380-538 (664)
76 2d7d_A Uvrabc system protein B 99.9 6.9E-25 2.4E-29 230.6 29.9 155 299-468 385-544 (661)
77 2p6n_A ATP-dependent RNA helic 99.9 1.1E-24 3.9E-29 193.3 14.1 140 319-468 9-148 (191)
78 3b6e_A Interferon-induced heli 99.9 8.7E-25 3E-29 199.2 11.0 167 139-309 29-216 (216)
79 2hjv_A ATP-dependent RNA helic 99.9 1.9E-23 6.6E-28 181.0 18.9 125 335-468 5-129 (163)
80 1t5i_A C_terminal domain of A 99.9 1.7E-23 5.7E-28 182.9 14.8 122 338-468 4-125 (172)
81 2jgn_A DBX, DDX3, ATP-dependen 99.9 4.8E-23 1.7E-27 182.0 16.1 127 334-468 14-140 (185)
82 3llm_A ATP-dependent RNA helic 99.9 2.1E-23 7.2E-28 192.3 14.2 182 130-325 48-231 (235)
83 1fuk_A Eukaryotic initiation f 99.9 5.9E-23 2E-27 178.4 15.8 121 339-468 3-124 (165)
84 2rb4_A ATP-dependent RNA helic 99.9 5.6E-23 1.9E-27 180.4 15.2 124 336-468 4-134 (175)
85 3eaq_A Heat resistant RNA depe 99.9 1.1E-22 3.8E-27 183.9 15.1 120 340-468 6-125 (212)
86 2vl7_A XPD; helicase, unknown 99.9 2E-22 6.9E-27 207.9 18.9 126 139-281 4-187 (540)
87 3i32_A Heat resistant RNA depe 99.9 4.8E-22 1.6E-26 188.2 16.7 120 340-468 3-122 (300)
88 1rif_A DAR protein, DNA helica 99.9 9.1E-23 3.1E-27 193.6 10.1 155 142-314 112-266 (282)
89 3crv_A XPD/RAD3 related DNA he 99.8 1.8E-19 6E-24 186.7 26.2 285 143-453 3-473 (551)
90 2yjt_D ATP-dependent RNA helic 99.8 5.8E-23 2E-27 179.3 0.0 121 339-468 3-124 (170)
91 2fz4_A DNA repair protein RAD2 99.8 1.5E-19 5.2E-24 166.2 14.3 139 142-313 92-231 (237)
92 4a15_A XPD helicase, ATP-depen 99.8 4.1E-17 1.4E-21 170.2 23.9 81 143-231 3-87 (620)
93 1z5z_A Helicase of the SNF2/RA 99.7 6.5E-17 2.2E-21 151.2 11.9 114 348-468 93-209 (271)
94 1w36_D RECD, exodeoxyribonucle 98.9 4.9E-09 1.7E-13 109.2 11.2 145 145-309 151-298 (608)
95 3e1s_A Exodeoxyribonuclease V, 98.4 1.1E-06 3.8E-11 90.5 12.2 126 142-307 188-313 (574)
96 4b3f_X DNA-binding protein smu 98.4 7.9E-07 2.7E-11 93.6 10.6 69 142-218 188-257 (646)
97 3upu_A ATP-dependent DNA helic 98.4 1.5E-06 5.1E-11 87.6 11.3 138 136-307 18-162 (459)
98 3lfu_A DNA helicase II; SF1 he 98.2 8.1E-05 2.8E-09 78.5 21.3 71 142-218 8-78 (647)
99 2xzl_A ATP-dependent helicase 98.2 1.3E-05 4.4E-10 85.8 15.0 70 141-217 358-427 (802)
100 2gk6_A Regulator of nonsense t 98.2 7.6E-06 2.6E-10 85.6 12.9 70 141-217 178-247 (624)
101 2wjy_A Regulator of nonsense t 98.2 1.6E-05 5.4E-10 85.0 14.2 70 141-217 354-423 (800)
102 2o0j_A Terminase, DNA packagin 97.4 0.00092 3.1E-08 64.8 11.7 73 143-221 163-235 (385)
103 3vkw_A Replicase large subunit 97.3 0.00047 1.6E-08 67.7 8.3 107 160-309 163-269 (446)
104 3hgt_A HDA1 complex subunit 3; 97.2 0.0013 4.3E-08 61.6 9.2 102 349-462 107-214 (328)
105 2orw_A Thymidine kinase; TMTK, 97.1 0.00026 9E-09 61.4 3.6 39 158-204 3-41 (184)
106 2b8t_A Thymidine kinase; deoxy 97.1 0.00034 1.2E-08 62.4 4.3 90 158-281 12-101 (223)
107 1pjr_A PCRA; DNA repair, DNA r 97.0 0.0027 9.4E-08 67.5 11.4 109 142-279 10-120 (724)
108 2orv_A Thymidine kinase; TP4A 97.0 0.0018 6.2E-08 57.4 8.0 39 158-204 19-57 (234)
109 3ec2_A DNA replication protein 97.0 0.0014 4.8E-08 56.5 7.3 19 157-175 37-55 (180)
110 2j9r_A Thymidine kinase; TK1, 97.0 0.00094 3.2E-08 58.7 6.1 40 158-205 28-67 (214)
111 3cpe_A Terminase, DNA packagin 97.0 0.0062 2.1E-07 63.1 13.0 73 143-221 163-235 (592)
112 3e2i_A Thymidine kinase; Zn-bi 96.8 0.0015 5.2E-08 57.2 5.5 40 158-205 28-67 (219)
113 1xx6_A Thymidine kinase; NESG, 96.7 0.00072 2.5E-08 58.8 2.7 39 158-204 8-46 (191)
114 3te6_A Regulatory protein SIR3 96.7 0.0078 2.7E-07 56.7 9.8 25 158-183 45-69 (318)
115 1w4r_A Thymidine kinase; type 96.6 0.0066 2.3E-07 52.4 8.1 38 158-203 20-57 (195)
116 2kjq_A DNAA-related protein; s 96.5 0.00081 2.8E-08 56.0 1.9 18 157-174 35-52 (149)
117 1l8q_A Chromosomal replication 96.5 0.0094 3.2E-07 56.6 9.3 18 158-175 37-54 (324)
118 1d2n_A N-ethylmaleimide-sensit 96.4 0.049 1.7E-06 50.1 13.4 17 159-175 65-81 (272)
119 3bos_A Putative DNA replicatio 96.3 0.0025 8.5E-08 57.5 4.1 19 157-175 51-69 (242)
120 2zpa_A Uncharacterized protein 96.3 0.0073 2.5E-07 62.3 7.8 112 143-310 175-288 (671)
121 1uaa_A REP helicase, protein ( 96.3 0.0071 2.4E-07 63.8 7.7 71 143-219 2-72 (673)
122 1jbk_A CLPB protein; beta barr 96.2 0.1 3.5E-06 44.6 13.9 17 159-175 44-60 (195)
123 3kl4_A SRP54, signal recogniti 96.2 0.014 4.7E-07 57.4 9.0 130 160-321 99-234 (433)
124 1a5t_A Delta prime, HOLB; zinc 96.2 0.035 1.2E-06 52.9 11.4 32 144-175 3-41 (334)
125 2chg_A Replication factor C sm 96.1 0.048 1.7E-06 48.0 11.5 40 268-308 101-140 (226)
126 2p65_A Hypothetical protein PF 96.0 0.026 9E-07 48.2 8.8 18 158-175 43-60 (187)
127 1g5t_A COB(I)alamin adenosyltr 95.9 0.026 8.8E-07 48.8 8.2 52 267-318 118-171 (196)
128 2v1u_A Cell division control p 95.9 0.011 3.9E-07 57.4 6.7 18 158-175 44-61 (387)
129 3h4m_A Proteasome-activating n 95.8 0.04 1.4E-06 51.1 10.0 53 121-175 14-68 (285)
130 3syl_A Protein CBBX; photosynt 95.8 0.02 6.8E-07 53.8 7.9 17 159-175 68-84 (309)
131 3u4q_A ATP-dependent helicase/ 95.8 0.017 5.8E-07 65.2 8.4 71 143-217 10-80 (1232)
132 2w58_A DNAI, primosome compone 95.7 0.039 1.3E-06 48.2 8.9 17 159-175 55-71 (202)
133 2z4s_A Chromosomal replication 95.7 0.052 1.8E-06 53.9 10.6 41 269-309 194-236 (440)
134 3u61_B DNA polymerase accessor 95.6 0.013 4.4E-07 55.7 5.8 40 268-307 104-143 (324)
135 2qgz_A Helicase loader, putati 95.6 0.024 8.2E-07 53.3 7.5 18 158-175 152-169 (308)
136 3dm5_A SRP54, signal recogniti 95.5 0.077 2.6E-06 52.2 10.8 40 160-207 102-143 (443)
137 1fnn_A CDC6P, cell division co 95.5 0.017 5.9E-07 56.2 6.3 16 160-175 46-61 (389)
138 2qby_B CDC6 homolog 3, cell di 95.3 0.046 1.6E-06 53.0 8.6 37 272-309 136-173 (384)
139 3eie_A Vacuolar protein sortin 95.3 0.18 6E-06 47.7 12.3 49 121-175 15-68 (322)
140 1njg_A DNA polymerase III subu 95.2 0.17 5.7E-06 45.1 11.6 39 268-307 125-163 (250)
141 1gm5_A RECG; helicase, replica 95.2 0.11 3.9E-06 55.1 11.7 74 375-448 418-496 (780)
142 3cf0_A Transitional endoplasmi 94.9 0.21 7.3E-06 46.6 11.6 19 157-175 48-66 (301)
143 1sxj_D Activator 1 41 kDa subu 94.8 0.1 3.6E-06 49.8 9.4 40 268-308 132-171 (353)
144 3oiy_A Reverse gyrase helicase 94.7 0.093 3.2E-06 51.5 9.0 76 373-448 63-145 (414)
145 1iqp_A RFCS; clamp loader, ext 94.7 0.17 5.8E-06 47.6 10.5 39 268-307 109-147 (327)
146 2qby_A CDC6 homolog 1, cell di 94.7 0.2 6.8E-06 48.3 11.2 18 158-175 45-62 (386)
147 3pfi_A Holliday junction ATP-d 94.5 0.088 3E-06 50.1 8.1 17 159-175 56-72 (338)
148 1sxj_E Activator 1 40 kDa subu 94.4 0.1 3.4E-06 50.0 8.2 43 267-310 132-174 (354)
149 2gno_A DNA polymerase III, gam 94.3 0.2 6.9E-06 46.8 9.7 40 267-307 80-119 (305)
150 2qz4_A Paraplegin; AAA+, SPG7, 94.2 0.27 9.2E-06 44.6 10.4 18 158-175 39-56 (262)
151 1sxj_A Activator 1 95 kDa subu 94.0 0.14 4.7E-06 52.0 8.6 41 268-310 147-189 (516)
152 1w5s_A Origin recognition comp 93.9 0.076 2.6E-06 52.0 6.3 16 160-175 52-69 (412)
153 2r6a_A DNAB helicase, replicat 93.8 0.18 6E-06 50.3 8.9 38 157-201 202-239 (454)
154 1jr3_A DNA polymerase III subu 93.8 0.27 9.3E-06 47.2 10.1 40 267-307 117-156 (373)
155 2qp9_X Vacuolar protein sortin 93.8 0.083 2.8E-06 50.7 6.3 17 159-175 85-101 (355)
156 1hqc_A RUVB; extended AAA-ATPa 93.6 0.13 4.3E-06 48.6 7.2 17 159-175 39-55 (324)
157 2dr3_A UPF0273 protein PH0284; 93.6 0.25 8.5E-06 44.3 8.9 51 157-216 22-72 (247)
158 1sxj_B Activator 1 37 kDa subu 93.6 0.16 5.4E-06 47.7 7.8 38 269-307 107-144 (323)
159 3uk6_A RUVB-like 2; hexameric 93.5 0.33 1.1E-05 46.6 10.1 17 159-175 71-87 (368)
160 2w0m_A SSO2452; RECA, SSPF, un 93.5 0.23 7.9E-06 44.0 8.3 19 157-175 22-40 (235)
161 1sxj_C Activator 1 40 kDa subu 93.4 0.32 1.1E-05 46.2 9.6 39 268-307 109-147 (340)
162 3hu3_A Transitional endoplasmi 93.4 0.19 6.6E-06 50.4 8.2 42 270-311 298-349 (489)
163 3pvs_A Replication-associated 93.3 0.13 4.3E-06 51.1 6.7 16 160-175 52-67 (447)
164 3vfd_A Spastin; ATPase, microt 93.1 0.28 9.5E-06 47.7 8.8 18 158-175 148-165 (389)
165 2q6t_A DNAB replication FORK h 93.1 0.17 5.7E-06 50.3 7.3 39 157-202 199-237 (444)
166 4ddu_A Reverse gyrase; topoiso 92.5 0.21 7.3E-06 55.4 7.7 75 373-448 120-202 (1104)
167 2fna_A Conserved hypothetical 91.9 5.9 0.0002 37.2 16.4 51 254-309 125-178 (357)
168 4b4t_K 26S protease regulatory 91.8 1.4 4.8E-05 43.1 11.8 54 119-175 167-223 (428)
169 2ehv_A Hypothetical protein PH 91.7 0.13 4.3E-06 46.4 4.1 43 268-310 134-181 (251)
170 2l8b_A Protein TRAI, DNA helic 91.7 0.17 5.7E-06 42.8 4.3 120 145-309 36-158 (189)
171 1ls1_A Signal recognition part 91.6 0.53 1.8E-05 43.7 8.3 18 158-175 98-115 (295)
172 2eyq_A TRCF, transcription-rep 91.6 0.41 1.4E-05 53.4 8.7 75 374-448 652-731 (1151)
173 3hjh_A Transcription-repair-co 91.5 0.68 2.3E-05 46.2 9.3 62 376-449 384-445 (483)
174 3co5_A Putative two-component 91.3 0.16 5.3E-06 41.5 3.8 19 156-174 25-43 (143)
175 3n70_A Transport activator; si 91.2 0.17 5.7E-06 41.5 3.9 38 271-309 78-115 (145)
176 3fe2_A Probable ATP-dependent 91.0 1.9 6.4E-05 38.4 11.1 72 373-448 101-182 (242)
177 2p6n_A ATP-dependent RNA helic 90.7 2.9 0.0001 35.7 11.6 73 194-277 54-130 (191)
178 1t6n_A Probable ATP-dependent 90.7 1.3 4.4E-05 38.8 9.6 71 375-448 83-164 (220)
179 3m6a_A ATP-dependent protease 90.6 0.25 8.7E-06 50.3 5.4 19 157-175 107-125 (543)
180 1qvr_A CLPB protein; coiled co 90.6 0.74 2.5E-05 49.8 9.3 17 159-175 192-208 (854)
181 2pl3_A Probable ATP-dependent 90.6 1.6 5.6E-05 38.6 10.3 70 374-448 97-177 (236)
182 3e70_C DPA, signal recognition 90.3 1.5 5E-05 41.3 10.0 53 269-321 211-264 (328)
183 2hjv_A ATP-dependent RNA helic 89.8 1.5 5.1E-05 36.4 8.7 74 194-278 35-112 (163)
184 1r6b_X CLPA protein; AAA+, N-t 89.4 0.92 3.1E-05 48.3 8.8 18 158-175 207-224 (758)
185 1p9r_A General secretion pathw 88.9 0.77 2.6E-05 44.9 7.1 27 148-174 155-183 (418)
186 1oyw_A RECQ helicase, ATP-depe 88.8 0.99 3.4E-05 45.7 8.1 58 375-432 66-123 (523)
187 3cf2_A TER ATPase, transitiona 88.2 0.56 1.9E-05 49.8 5.9 53 119-174 472-527 (806)
188 1fuk_A Eukaryotic initiation f 87.9 2.1 7.3E-05 35.5 8.4 73 194-277 30-106 (165)
189 3eaq_A Heat resistant RNA depe 87.6 2.2 7.5E-05 37.2 8.6 71 194-275 31-105 (212)
190 3cmu_A Protein RECA, recombina 87.6 0.46 1.6E-05 55.3 5.1 39 158-204 1427-1465(2050)
191 1e9r_A Conjugal transfer prote 87.5 0.55 1.9E-05 46.3 5.2 44 157-208 52-95 (437)
192 2v1x_A ATP-dependent DNA helic 87.5 1 3.6E-05 46.3 7.4 58 375-432 85-144 (591)
193 3ber_A Probable ATP-dependent 87.4 2.3 7.9E-05 38.1 9.0 71 374-448 111-192 (249)
194 2oxc_A Probable ATP-dependent 87.3 1.6 5.4E-05 38.6 7.7 70 374-448 92-172 (230)
195 2gxq_A Heat resistant RNA depe 87.3 2.2 7.7E-05 36.6 8.6 72 373-448 71-150 (207)
196 3b85_A Phosphate starvation-in 87.3 0.69 2.4E-05 40.4 5.1 30 145-174 9-38 (208)
197 2oap_1 GSPE-2, type II secreti 87.1 0.62 2.1E-05 46.9 5.2 40 133-174 236-276 (511)
198 3io5_A Recombination and repai 87.0 1.2 3.9E-05 41.6 6.6 41 160-206 30-70 (333)
199 3jvv_A Twitching mobility prot 86.9 0.76 2.6E-05 43.9 5.5 18 157-174 122-139 (356)
200 4a1f_A DNAB helicase, replicat 86.8 0.42 1.4E-05 45.2 3.6 38 157-202 45-82 (338)
201 1xti_A Probable ATP-dependent 86.6 2.7 9.4E-05 40.2 9.6 72 374-448 76-158 (391)
202 3pxi_A Negative regulator of g 86.5 0.69 2.4E-05 49.3 5.5 16 160-175 523-538 (758)
203 2rb4_A ATP-dependent RNA helic 86.4 1.7 6E-05 36.4 7.1 71 194-275 34-108 (175)
204 3ly5_A ATP-dependent RNA helic 86.4 6 0.0002 35.6 11.2 71 374-448 126-207 (262)
205 3iuy_A Probable ATP-dependent 86.3 1.8 6.3E-05 38.0 7.5 72 373-448 93-173 (228)
206 4b4t_M 26S protease regulatory 86.1 0.59 2E-05 45.8 4.3 55 118-175 175-232 (434)
207 1vec_A ATP-dependent RNA helic 85.9 3 0.0001 35.8 8.6 71 374-448 71-152 (206)
208 2l82_A Designed protein OR32; 85.8 4.4 0.00015 30.2 7.8 49 377-425 5-53 (162)
209 2eyu_A Twitching motility prot 85.8 0.4 1.4E-05 43.6 2.8 20 155-174 22-41 (261)
210 3bor_A Human initiation factor 85.5 1.9 6.6E-05 38.2 7.3 73 373-448 97-179 (237)
211 2gza_A Type IV secretion syste 85.3 0.53 1.8E-05 45.2 3.6 20 155-174 172-191 (361)
212 3cf2_A TER ATPase, transitiona 84.7 0.89 3.1E-05 48.2 5.2 16 159-174 239-254 (806)
213 1lvg_A Guanylate kinase, GMP k 84.4 0.7 2.4E-05 39.9 3.6 24 157-182 3-26 (198)
214 1t5i_A C_terminal domain of A 84.3 2.5 8.7E-05 35.4 7.1 74 194-278 31-108 (172)
215 3lda_A DNA repair protein RAD5 84.0 2.1 7.1E-05 41.5 7.1 18 158-175 178-195 (400)
216 2zts_A Putative uncharacterize 83.9 1.1 3.7E-05 40.0 4.9 51 157-215 29-79 (251)
217 3hws_A ATP-dependent CLP prote 83.8 1.3 4.5E-05 42.3 5.7 19 157-175 50-68 (363)
218 1kgd_A CASK, peripheral plasma 83.8 0.48 1.6E-05 40.3 2.3 18 157-174 4-21 (180)
219 2ffh_A Protein (FFH); SRP54, s 83.8 9 0.00031 37.3 11.6 42 159-208 99-142 (425)
220 2jgn_A DBX, DDX3, ATP-dependen 83.2 2.2 7.6E-05 36.2 6.3 72 194-276 46-121 (185)
221 1vma_A Cell division protein F 83.2 5.3 0.00018 37.1 9.3 17 159-175 105-121 (306)
222 2db3_A ATP-dependent RNA helic 83.2 4.3 0.00015 39.8 9.3 71 374-448 129-209 (434)
223 1ofh_A ATP-dependent HSL prote 83.1 2.1 7.1E-05 39.6 6.7 18 158-175 50-67 (310)
224 3vaa_A Shikimate kinase, SK; s 83.0 0.53 1.8E-05 40.7 2.3 19 157-175 24-42 (199)
225 3nbx_X ATPase RAVA; AAA+ ATPas 82.9 1.4 4.8E-05 44.1 5.6 26 149-174 32-57 (500)
226 2i4i_A ATP-dependent RNA helic 82.8 6 0.00021 38.2 10.2 72 193-275 275-350 (417)
227 1wrb_A DJVLGB; RNA helicase, D 82.7 4 0.00014 36.5 8.2 71 374-448 100-180 (253)
228 2bjv_A PSP operon transcriptio 82.4 0.95 3.3E-05 41.0 3.9 19 157-175 28-46 (265)
229 4b4t_J 26S protease regulatory 82.3 1.5 5.2E-05 42.3 5.3 54 119-175 143-199 (405)
230 3i5x_A ATP-dependent RNA helic 82.0 12 0.00041 37.9 12.5 77 194-278 339-419 (563)
231 4ag6_A VIRB4 ATPase, type IV s 81.8 1.3 4.3E-05 43.0 4.7 42 157-206 34-75 (392)
232 3trf_A Shikimate kinase, SK; a 81.8 0.62 2.1E-05 39.6 2.2 18 158-175 5-22 (185)
233 2px0_A Flagellar biosynthesis 81.4 1.5 5.1E-05 40.6 4.8 18 158-175 105-122 (296)
234 2r44_A Uncharacterized protein 81.4 0.7 2.4E-05 43.6 2.6 24 152-175 40-63 (331)
235 3iij_A Coilin-interacting nucl 81.4 0.57 2E-05 39.6 1.8 19 157-175 10-28 (180)
236 3a8t_A Adenylate isopentenyltr 81.3 0.69 2.3E-05 43.6 2.5 17 159-175 41-57 (339)
237 3lw7_A Adenylate kinase relate 81.2 0.66 2.3E-05 38.8 2.2 16 160-175 3-18 (179)
238 2ewv_A Twitching motility prot 81.2 0.79 2.7E-05 44.1 2.9 19 156-174 134-152 (372)
239 2pt7_A CAG-ALFA; ATPase, prote 81.1 0.73 2.5E-05 43.5 2.6 19 155-173 168-186 (330)
240 1qhx_A CPT, protein (chloramph 81.1 0.68 2.3E-05 39.0 2.2 18 158-175 3-20 (178)
241 3tau_A Guanylate kinase, GMP k 81.0 0.89 3E-05 39.6 3.0 19 157-175 7-25 (208)
242 2qor_A Guanylate kinase; phosp 80.8 0.66 2.3E-05 40.3 2.1 20 156-175 10-29 (204)
243 4b4t_L 26S protease subunit RP 80.8 1.2 4E-05 43.7 4.0 17 159-175 216-232 (437)
244 1wp9_A ATP-dependent RNA helic 80.7 7.6 0.00026 38.1 10.2 90 348-448 32-131 (494)
245 1z6g_A Guanylate kinase; struc 80.5 1.2 4.2E-05 39.1 3.7 19 156-174 21-39 (218)
246 3d8b_A Fidgetin-like protein 1 80.3 5.7 0.00019 37.7 8.7 18 158-175 117-134 (357)
247 2j41_A Guanylate kinase; GMP, 80.3 0.7 2.4E-05 40.0 2.1 20 156-175 4-23 (207)
248 1rj9_A FTSY, signal recognitio 80.3 1.7 5.8E-05 40.4 4.8 26 158-185 102-127 (304)
249 1qde_A EIF4A, translation init 80.3 2.7 9.1E-05 36.8 6.0 71 373-448 81-161 (224)
250 3nwn_A Kinesin-like protein KI 79.9 1.2 4.2E-05 42.3 3.7 25 151-175 96-122 (359)
251 1w36_B RECB, exodeoxyribonucle 79.8 3.5 0.00012 46.2 8.0 59 160-218 18-80 (1180)
252 3tr0_A Guanylate kinase, GMP k 79.8 1.2 4E-05 38.5 3.4 18 157-174 6-23 (205)
253 1zp6_A Hypothetical protein AT 79.7 0.52 1.8E-05 40.3 1.0 18 157-174 8-25 (191)
254 1u0j_A DNA replication protein 79.5 3.1 0.00011 37.7 6.0 43 130-175 73-121 (267)
255 1kag_A SKI, shikimate kinase I 79.4 0.95 3.2E-05 37.8 2.6 17 158-174 4-20 (173)
256 2ze6_A Isopentenyl transferase 79.4 1 3.4E-05 40.7 2.8 15 161-175 4-18 (253)
257 2qmh_A HPR kinase/phosphorylas 79.4 0.92 3.1E-05 39.1 2.4 18 158-175 34-51 (205)
258 3exa_A TRNA delta(2)-isopenten 79.2 1 3.5E-05 41.9 2.8 16 160-175 5-20 (322)
259 3sqw_A ATP-dependent RNA helic 79.2 17 0.00059 37.0 12.5 77 194-278 288-368 (579)
260 1y63_A LMAJ004144AAA protein; 79.0 0.88 3E-05 38.7 2.2 19 157-175 9-27 (184)
261 1ex7_A Guanylate kinase; subst 79.0 1 3.4E-05 38.5 2.6 16 159-174 2-17 (186)
262 3foz_A TRNA delta(2)-isopenten 79.0 1.1 3.6E-05 41.7 2.8 16 160-175 12-27 (316)
263 3b9q_A Chloroplast SRP recepto 78.9 1.6 5.6E-05 40.5 4.2 36 158-201 100-135 (302)
264 1bg2_A Kinesin; motor protein, 78.9 1.5 5E-05 41.2 3.9 25 151-175 69-95 (325)
265 4b4t_H 26S protease regulatory 78.9 0.92 3.2E-05 44.6 2.5 52 119-175 204-260 (467)
266 3i32_A Heat resistant RNA depe 78.8 4.4 0.00015 37.5 7.1 74 194-278 28-105 (300)
267 3a00_A Guanylate kinase, GMP k 78.7 1 3.4E-05 38.4 2.5 22 159-182 2-23 (186)
268 4a74_A DNA repair and recombin 78.7 1.6 5.5E-05 38.3 4.0 18 157-174 24-41 (231)
269 3dc4_A Kinesin-like protein NO 78.6 1.4 4.8E-05 41.7 3.6 24 151-174 86-111 (344)
270 1xwi_A SKD1 protein; VPS4B, AA 78.5 3.6 0.00012 38.5 6.5 49 121-175 9-62 (322)
271 3ney_A 55 kDa erythrocyte memb 78.4 1.2 4.2E-05 38.4 3.0 18 157-174 18-35 (197)
272 1gku_B Reverse gyrase, TOP-RG; 78.3 3.5 0.00012 45.6 7.2 73 374-448 99-181 (1054)
273 1kht_A Adenylate kinase; phosp 78.1 0.95 3.2E-05 38.5 2.2 18 158-175 3-20 (192)
274 1ly1_A Polynucleotide kinase; 78.1 0.94 3.2E-05 38.1 2.2 16 160-175 4-19 (181)
275 3kb2_A SPBC2 prophage-derived 77.7 0.97 3.3E-05 37.6 2.1 16 160-175 3-18 (173)
276 2h58_A Kinesin-like protein KI 77.6 1.7 5.8E-05 40.9 3.9 26 150-175 71-98 (330)
277 2vvg_A Kinesin-2; motor protei 77.6 1.7 5.8E-05 41.2 3.9 24 151-174 81-106 (350)
278 1ojl_A Transcriptional regulat 77.5 1.5 5.1E-05 40.8 3.5 19 157-175 24-42 (304)
279 2y65_A Kinesin, kinesin heavy 77.3 1.7 5.9E-05 41.4 3.9 24 151-174 76-101 (365)
280 2x8a_A Nuclear valosin-contain 77.2 0.66 2.3E-05 42.5 0.9 51 121-174 7-60 (274)
281 3b6u_A Kinesin-like protein KI 77.1 1.7 5.7E-05 41.6 3.7 24 151-174 93-118 (372)
282 3b9p_A CG5977-PA, isoform A; A 77.1 0.97 3.3E-05 41.8 2.1 18 158-175 54-71 (297)
283 1f9v_A Kinesin-like protein KA 77.0 1.7 5.7E-05 41.2 3.7 25 151-175 76-102 (347)
284 2zfi_A Kinesin-like protein KI 77.0 1.8 6.1E-05 41.4 3.9 24 151-174 81-106 (366)
285 4a14_A Kinesin, kinesin-like p 76.9 1.8 6.1E-05 41.0 3.9 24 151-174 75-100 (344)
286 1t5c_A CENP-E protein, centrom 76.9 1.7 5.8E-05 41.2 3.7 25 151-175 69-95 (349)
287 1goj_A Kinesin, kinesin heavy 76.9 1.7 5.8E-05 41.3 3.7 23 152-174 73-97 (355)
288 1tue_A Replication protein E1; 76.9 1.2 4.3E-05 38.5 2.5 44 130-175 28-75 (212)
289 4etp_A Kinesin-like protein KA 76.9 1.9 6.4E-05 41.8 4.0 25 151-175 132-158 (403)
290 4gp7_A Metallophosphoesterase; 76.8 0.93 3.2E-05 38.1 1.7 19 157-175 8-26 (171)
291 1v8k_A Kinesin-like protein KI 76.8 1.6 5.4E-05 42.3 3.5 24 152-175 147-172 (410)
292 3lre_A Kinesin-like protein KI 76.7 1.7 5.9E-05 41.3 3.7 25 151-175 97-123 (355)
293 2nr8_A Kinesin-like protein KI 76.7 1.7 5.9E-05 41.3 3.7 24 151-174 95-120 (358)
294 3gbj_A KIF13B protein; kinesin 76.6 1.7 5.9E-05 41.2 3.7 25 151-175 84-110 (354)
295 4eun_A Thermoresistant glucoki 76.5 1.1 3.9E-05 38.5 2.3 19 157-175 28-46 (200)
296 3c8u_A Fructokinase; YP_612366 76.4 1.5 5E-05 38.1 3.0 25 158-184 22-46 (208)
297 1s96_A Guanylate kinase, GMP k 76.4 1.5 5.2E-05 38.5 3.0 19 156-174 14-32 (219)
298 3t0q_A AGR253WP; kinesin, alph 76.3 1.7 5.7E-05 41.3 3.4 25 151-175 77-103 (349)
299 3crm_A TRNA delta(2)-isopenten 76.1 1.4 4.8E-05 41.2 2.8 16 160-175 7-22 (323)
300 1znw_A Guanylate kinase, GMP k 76.1 1.2 4.1E-05 38.7 2.3 21 154-174 16-36 (207)
301 3cm0_A Adenylate kinase; ATP-b 76.0 0.84 2.9E-05 38.7 1.3 18 158-175 4-21 (186)
302 3bh0_A DNAB-like replicative h 76.0 2.3 7.9E-05 39.7 4.4 50 157-215 67-116 (315)
303 1lv7_A FTSH; alpha/beta domain 76.0 1.1 3.7E-05 40.4 2.0 17 159-175 46-62 (257)
304 2wbe_C Bipolar kinesin KRP-130 75.7 1.8 6.3E-05 41.4 3.6 24 151-174 92-117 (373)
305 3fht_A ATP-dependent RNA helic 75.7 7.3 0.00025 37.4 8.1 72 194-276 266-341 (412)
306 1knq_A Gluconate kinase; ALFA/ 75.6 1 3.6E-05 37.7 1.7 18 158-175 8-25 (175)
307 2og2_A Putative signal recogni 75.6 2.2 7.6E-05 40.6 4.1 35 159-201 158-192 (359)
308 1x88_A Kinesin-like protein KI 75.5 1.7 5.8E-05 41.4 3.3 25 151-175 80-106 (359)
309 2j37_W Signal recognition part 75.5 10 0.00035 37.8 9.1 40 160-207 103-144 (504)
310 1f2t_A RAD50 ABC-ATPase; DNA d 75.5 2 6.9E-05 35.1 3.4 23 160-184 25-47 (149)
311 1hv8_A Putative ATP-dependent 75.4 8.1 0.00028 36.3 8.3 73 194-277 238-314 (367)
312 1n0w_A DNA repair protein RAD5 75.2 2.9 9.8E-05 37.0 4.7 19 157-175 23-41 (243)
313 2r8r_A Sensor protein; KDPD, P 75.1 3.1 0.00011 36.6 4.7 17 160-176 8-24 (228)
314 2heh_A KIF2C protein; kinesin, 75.1 1.9 6.4E-05 41.4 3.5 25 151-175 126-152 (387)
315 1cr0_A DNA primase/helicase; R 75.0 2.5 8.5E-05 39.0 4.3 20 156-175 33-52 (296)
316 3u06_A Protein claret segregat 75.0 1.9 6.5E-05 41.8 3.6 26 150-175 129-156 (412)
317 1um8_A ATP-dependent CLP prote 74.9 5.7 0.0002 38.0 7.0 18 158-175 72-89 (376)
318 2i3b_A HCR-ntpase, human cance 74.9 2.4 8.2E-05 36.2 3.8 41 267-310 103-145 (189)
319 3d3q_A TRNA delta(2)-isopenten 74.6 1.6 5.5E-05 41.1 2.9 16 160-175 9-24 (340)
320 2yvu_A Probable adenylyl-sulfa 74.6 2.8 9.5E-05 35.5 4.2 18 158-175 13-30 (186)
321 3pey_A ATP-dependent RNA helic 74.5 8 0.00027 36.8 8.0 75 194-279 243-321 (395)
322 2owm_A Nckin3-434, related to 74.5 2.2 7.5E-05 41.8 3.9 25 151-175 128-154 (443)
323 2z43_A DNA repair and recombin 74.5 3.5 0.00012 38.6 5.2 18 158-175 107-124 (324)
324 1q0u_A Bstdead; DEAD protein, 74.4 2.7 9.2E-05 36.6 4.2 71 374-448 72-156 (219)
325 3t61_A Gluconokinase; PSI-biol 74.3 1.4 4.6E-05 38.1 2.2 17 159-175 19-35 (202)
326 2cvh_A DNA repair and recombin 74.2 2.9 0.0001 36.3 4.4 19 157-175 19-37 (220)
327 2d7d_A Uvrabc system protein B 74.2 6.8 0.00023 40.8 7.8 76 194-280 445-524 (661)
328 3cob_A Kinesin heavy chain-lik 74.1 1.7 6E-05 41.4 3.0 25 151-175 71-97 (369)
329 1ye8_A Protein THEP1, hypothet 74.0 2.2 7.6E-05 36.0 3.4 15 160-174 2-16 (178)
330 3kta_A Chromosome segregation 73.5 2 6.8E-05 36.2 3.0 23 160-184 28-50 (182)
331 3cmw_A Protein RECA, recombina 73.5 3.2 0.00011 47.8 5.3 50 158-218 1431-1480(1706)
332 2v9p_A Replication protein E1; 73.4 1.9 6.5E-05 40.0 3.0 26 157-184 125-150 (305)
333 2zr9_A Protein RECA, recombina 73.4 3.3 0.00011 39.3 4.8 38 157-202 60-97 (349)
334 2c95_A Adenylate kinase 1; tra 73.3 1.5 5.1E-05 37.4 2.2 19 157-175 8-26 (196)
335 1u94_A RECA protein, recombina 73.3 3.5 0.00012 39.2 4.9 38 157-202 62-99 (356)
336 1fuu_A Yeast initiation factor 73.3 13 0.00044 35.4 9.2 71 373-448 88-168 (394)
337 3bfn_A Kinesin-like protein KI 73.3 1.9 6.4E-05 41.5 3.0 23 153-175 92-116 (388)
338 2xxa_A Signal recognition part 73.2 13 0.00044 36.3 9.1 42 160-208 102-145 (433)
339 2rep_A Kinesin-like protein KI 73.2 2.4 8.1E-05 40.6 3.7 25 151-175 107-133 (376)
340 4a2p_A RIG-I, retinoic acid in 73.0 14 0.00047 37.2 9.7 71 374-448 55-136 (556)
341 3uie_A Adenylyl-sulfate kinase 73.0 2.1 7.1E-05 36.9 3.0 19 157-175 24-42 (200)
342 2rhm_A Putative kinase; P-loop 72.9 1.5 5E-05 37.4 2.0 17 159-175 6-22 (193)
343 1s2m_A Putative ATP-dependent 72.7 9.5 0.00032 36.5 8.1 73 194-277 258-334 (400)
344 2bwj_A Adenylate kinase 5; pho 72.7 1.7 5.7E-05 37.2 2.3 19 157-175 11-29 (199)
345 1nlf_A Regulatory protein REPA 72.6 7.8 0.00027 35.2 7.1 22 155-176 27-48 (279)
346 2yhs_A FTSY, cell division pro 72.6 2.9 9.8E-05 41.6 4.2 33 160-200 295-327 (503)
347 1via_A Shikimate kinase; struc 72.5 1.8 6.1E-05 36.3 2.4 16 160-175 6-21 (175)
348 1gvn_B Zeta; postsegregational 72.5 1.5 5.2E-05 40.4 2.1 16 160-175 35-50 (287)
349 4b4t_I 26S protease regulatory 72.4 1.3 4.3E-05 43.2 1.6 54 119-175 177-233 (437)
350 3nwj_A ATSK2; P loop, shikimat 72.4 2.6 8.9E-05 37.9 3.6 19 157-175 47-65 (250)
351 1tev_A UMP-CMP kinase; ploop, 72.2 1.6 5.6E-05 37.1 2.2 17 159-175 4-20 (196)
352 1zuh_A Shikimate kinase; alpha 72.2 1.6 5.5E-05 36.2 2.1 17 159-175 8-24 (168)
353 2v54_A DTMP kinase, thymidylat 72.1 1.7 5.9E-05 37.3 2.3 19 157-175 3-21 (204)
354 2r62_A Cell division protease 72.1 1.1 3.7E-05 40.7 1.0 18 158-175 44-61 (268)
355 3t15_A Ribulose bisphosphate c 72.1 1.9 6.4E-05 39.8 2.7 16 160-175 38-53 (293)
356 2bdt_A BH3686; alpha-beta prot 72.0 1.7 5.8E-05 37.0 2.2 16 160-175 4-19 (189)
357 1zu4_A FTSY; GTPase, signal re 72.0 3.2 0.00011 38.9 4.2 17 159-175 106-122 (320)
358 3fb4_A Adenylate kinase; psych 71.6 1.7 5.9E-05 37.8 2.2 16 160-175 2-17 (216)
359 2iyv_A Shikimate kinase, SK; t 71.6 2.1 7E-05 36.2 2.6 17 159-175 3-19 (184)
360 4fcw_A Chaperone protein CLPB; 71.5 1.9 6.6E-05 39.9 2.7 16 160-175 49-64 (311)
361 1nks_A Adenylate kinase; therm 71.5 1.6 5.6E-05 37.0 2.0 16 160-175 3-18 (194)
362 1xjc_A MOBB protein homolog; s 71.4 4.8 0.00016 33.6 4.8 15 160-174 6-20 (169)
363 3pxg_A Negative regulator of g 71.2 4.7 0.00016 40.0 5.5 18 158-175 201-218 (468)
364 3lnc_A Guanylate kinase, GMP k 71.1 1.4 4.7E-05 39.0 1.4 19 156-174 25-43 (231)
365 3eph_A TRNA isopentenyltransfe 71.1 2 6.8E-05 41.5 2.6 16 160-175 4-19 (409)
366 1aky_A Adenylate kinase; ATP:A 71.1 1.9 6.3E-05 37.8 2.3 18 158-175 4-21 (220)
367 2ius_A DNA translocase FTSK; n 71.0 4.9 0.00017 40.2 5.5 19 157-175 166-184 (512)
368 1m7g_A Adenylylsulfate kinase; 70.9 2 6.7E-05 37.4 2.4 29 146-175 14-42 (211)
369 1yks_A Genome polyprotein [con 70.9 5 0.00017 39.5 5.6 69 194-274 177-245 (440)
370 3hr8_A Protein RECA; alpha and 70.9 3.3 0.00011 39.3 4.1 39 158-204 61-99 (356)
371 3asz_A Uridine kinase; cytidin 70.9 2.4 8.2E-05 36.7 3.0 24 158-183 6-29 (211)
372 1pzn_A RAD51, DNA repair and r 70.8 3.1 0.00011 39.5 3.9 18 158-175 131-148 (349)
373 2j0s_A ATP-dependent RNA helic 70.7 11 0.00038 36.2 8.0 73 194-277 276-352 (410)
374 3tif_A Uncharacterized ABC tra 70.7 2.3 8E-05 37.8 2.8 17 157-173 30-46 (235)
375 1e6c_A Shikimate kinase; phosp 70.6 2.1 7.2E-05 35.6 2.4 17 159-175 3-19 (173)
376 1zak_A Adenylate kinase; ATP:A 70.5 2 7E-05 37.6 2.4 17 159-175 6-22 (222)
377 3dl0_A Adenylate kinase; phosp 70.5 1.9 6.4E-05 37.6 2.2 16 160-175 2-17 (216)
378 1v5w_A DMC1, meiotic recombina 70.4 4.1 0.00014 38.5 4.7 44 158-203 122-165 (343)
379 1zd8_A GTP:AMP phosphotransfer 70.4 1.8 6E-05 38.2 2.0 18 158-175 7-24 (227)
380 3tqc_A Pantothenate kinase; bi 70.3 7.6 0.00026 36.2 6.4 23 161-185 95-117 (321)
381 3dkp_A Probable ATP-dependent 70.3 1.7 5.9E-05 38.7 1.9 73 373-448 97-181 (245)
382 1ixz_A ATP-dependent metallopr 70.3 1.9 6.4E-05 38.8 2.2 15 160-174 51-65 (254)
383 3sr0_A Adenylate kinase; phosp 69.9 3.1 0.0001 36.1 3.4 16 161-176 3-18 (206)
384 2c9o_A RUVB-like 1; hexameric 69.7 2.3 7.9E-05 42.1 2.9 18 158-175 63-80 (456)
385 1qf9_A UMP/CMP kinase, protein 69.5 1.9 6.6E-05 36.5 2.0 16 160-175 8-23 (194)
386 2cdn_A Adenylate kinase; phosp 69.3 2.1 7.1E-05 36.8 2.2 17 159-175 21-37 (201)
387 4dzz_A Plasmid partitioning pr 69.3 10 0.00035 32.3 6.7 31 246-279 55-85 (206)
388 1in4_A RUVB, holliday junction 69.2 2.7 9.3E-05 39.6 3.1 17 159-175 52-68 (334)
389 3umf_A Adenylate kinase; rossm 69.1 3.3 0.00011 36.3 3.4 19 158-176 29-47 (217)
390 2pez_A Bifunctional 3'-phospho 69.1 1.9 6.4E-05 36.3 1.8 19 157-175 4-22 (179)
391 2r2a_A Uncharacterized protein 69.0 3.1 0.00011 35.9 3.2 15 161-175 8-22 (199)
392 1htw_A HI0065; nucleotide-bind 68.9 2.8 9.6E-05 34.6 2.8 26 157-184 32-57 (158)
393 1ukz_A Uridylate kinase; trans 68.8 2.2 7.4E-05 36.7 2.2 16 160-175 17-32 (203)
394 3eme_A Rhodanese-like domain p 68.6 4 0.00014 30.6 3.4 37 373-409 55-91 (103)
395 3gk5_A Uncharacterized rhodane 68.6 3.9 0.00013 31.1 3.4 37 373-409 54-90 (108)
396 3b6e_A Interferon-induced heli 68.5 13 0.00043 31.8 7.2 96 348-448 57-168 (216)
397 1ak2_A Adenylate kinase isoenz 68.5 2.1 7.2E-05 37.9 2.1 18 158-175 16-33 (233)
398 2jaq_A Deoxyguanosine kinase; 68.4 2.2 7.6E-05 36.6 2.2 16 160-175 2-17 (205)
399 1g8p_A Magnesium-chelatase 38 68.3 1.6 5.3E-05 41.4 1.2 18 158-175 45-62 (350)
400 1nij_A Hypothetical protein YJ 68.3 3.3 0.00011 38.7 3.4 14 161-174 7-20 (318)
401 2iut_A DNA translocase FTSK; n 68.1 6.1 0.00021 40.0 5.5 26 158-184 214-239 (574)
402 2vli_A Antibiotic resistance p 68.0 1.9 6.4E-05 36.3 1.5 18 158-175 5-22 (183)
403 3foj_A Uncharacterized protein 67.9 4.3 0.00015 30.2 3.5 37 373-409 55-91 (100)
404 1xp8_A RECA protein, recombina 67.9 5.2 0.00018 38.2 4.8 38 157-202 73-110 (366)
405 1cke_A CK, MSSA, protein (cyti 67.9 2.3 7.8E-05 37.3 2.2 17 159-175 6-22 (227)
406 3qf7_A RAD50; ABC-ATPase, ATPa 67.8 3.3 0.00011 39.6 3.4 38 398-435 303-346 (365)
407 3qks_A DNA double-strand break 67.8 3.6 0.00012 35.5 3.4 24 160-185 25-48 (203)
408 2pt5_A Shikimate kinase, SK; a 67.8 2.4 8.1E-05 35.1 2.2 16 160-175 2-17 (168)
409 1c4o_A DNA nucleotide excision 67.8 11 0.00038 39.2 7.6 76 194-280 439-518 (664)
410 2wwf_A Thymidilate kinase, put 67.7 2.2 7.7E-05 36.8 2.1 19 157-175 9-27 (212)
411 2plr_A DTMP kinase, probable t 67.5 2.1 7E-05 37.0 1.8 18 158-175 4-21 (213)
412 3iwh_A Rhodanese-like domain p 67.4 4.4 0.00015 30.6 3.4 36 373-408 55-90 (103)
413 2xau_A PRE-mRNA-splicing facto 67.4 12 0.00041 39.7 7.9 76 194-275 303-393 (773)
414 2cbz_A Multidrug resistance-as 67.2 3 0.0001 37.1 2.8 17 157-173 30-46 (237)
415 3a4m_A L-seryl-tRNA(SEC) kinas 67.2 2.4 8.1E-05 38.3 2.2 17 159-175 5-21 (260)
416 1sgw_A Putative ABC transporte 67.2 3.5 0.00012 36.0 3.2 17 157-173 34-50 (214)
417 2pbr_A DTMP kinase, thymidylat 66.8 2.5 8.6E-05 35.8 2.2 15 161-175 3-17 (195)
418 1sky_E F1-ATPase, F1-ATP synth 66.7 8.7 0.0003 37.8 6.2 22 154-175 147-168 (473)
419 1jjv_A Dephospho-COA kinase; P 66.7 2.5 8.6E-05 36.4 2.2 16 160-175 4-19 (206)
420 3bgw_A DNAB-like replicative h 66.7 6.7 0.00023 38.6 5.4 37 157-201 196-232 (444)
421 1e4v_A Adenylate kinase; trans 66.5 2.4 8.2E-05 36.9 2.0 16 160-175 2-17 (214)
422 2qt1_A Nicotinamide riboside k 66.4 1.4 4.8E-05 38.1 0.4 19 157-175 20-38 (207)
423 2z0h_A DTMP kinase, thymidylat 66.4 2.6 8.8E-05 35.9 2.2 15 161-175 3-17 (197)
424 1nn5_A Similar to deoxythymidy 66.4 2.5 8.6E-05 36.6 2.1 19 157-175 8-26 (215)
425 3auy_A DNA double-strand break 66.1 3.5 0.00012 39.5 3.2 35 399-433 306-345 (371)
426 2v3c_C SRP54, signal recogniti 66.1 4.7 0.00016 39.5 4.1 17 159-175 100-116 (432)
427 2if2_A Dephospho-COA kinase; a 66.1 2.5 8.5E-05 36.4 2.0 16 160-175 3-18 (204)
428 1rz3_A Hypothetical protein rb 65.8 6 0.0002 33.9 4.4 17 159-175 23-39 (201)
429 2xb4_A Adenylate kinase; ATP-b 65.6 2.7 9.2E-05 36.9 2.2 15 161-175 3-17 (223)
430 4anj_A Unconventional myosin-V 65.6 4.8 0.00016 44.0 4.4 97 87-185 64-170 (1052)
431 3gfo_A Cobalt import ATP-bindi 65.5 3.3 0.00011 37.8 2.8 17 157-173 33-49 (275)
432 3be4_A Adenylate kinase; malar 65.3 2.7 9.3E-05 36.7 2.1 17 159-175 6-22 (217)
433 2pze_A Cystic fibrosis transme 65.2 3.5 0.00012 36.4 2.8 17 157-173 33-49 (229)
434 2bbw_A Adenylate kinase 4, AK4 65.0 2.8 9.5E-05 37.4 2.2 18 158-175 27-44 (246)
435 1iy2_A ATP-dependent metallopr 65.0 3.5 0.00012 37.6 2.8 15 160-174 75-89 (278)
436 2ghi_A Transport protein; mult 64.8 3.6 0.00012 37.2 2.8 17 157-173 45-61 (260)
437 2pcj_A ABC transporter, lipopr 64.8 3.4 0.00012 36.4 2.6 17 157-173 29-45 (224)
438 1wv9_A Rhodanese homolog TT165 64.7 6.1 0.00021 29.0 3.7 35 375-409 54-88 (94)
439 3f9v_A Minichromosome maintena 64.7 3.2 0.00011 42.7 2.7 14 160-173 329-342 (595)
440 2wv9_A Flavivirin protease NS2 64.6 9.9 0.00034 39.6 6.5 68 194-274 410-478 (673)
441 2ff7_A Alpha-hemolysin translo 64.6 3.7 0.00012 36.8 2.8 17 157-173 34-50 (247)
442 3tlx_A Adenylate kinase 2; str 64.5 2.9 9.9E-05 37.3 2.2 17 159-175 30-46 (243)
443 4a2q_A RIG-I, retinoic acid in 64.4 22 0.00074 37.9 9.3 71 374-448 296-377 (797)
444 2f1r_A Molybdopterin-guanine d 64.3 2.5 8.5E-05 35.5 1.6 16 160-175 4-19 (171)
445 1j8m_F SRP54, signal recogniti 64.3 9.6 0.00033 35.1 5.7 16 160-175 100-115 (297)
446 1ry6_A Internal kinesin; kines 64.3 4.4 0.00015 38.5 3.4 19 157-175 82-102 (360)
447 3fmo_B ATP-dependent RNA helic 64.3 6.2 0.00021 36.4 4.5 68 374-448 162-241 (300)
448 2zan_A Vacuolar protein sortin 64.2 3.5 0.00012 40.7 2.8 18 158-175 167-184 (444)
449 1g6h_A High-affinity branched- 64.0 3.8 0.00013 37.0 2.8 17 157-173 32-48 (257)
450 1g41_A Heat shock protein HSLU 63.9 3.4 0.00012 40.5 2.7 18 158-175 50-67 (444)
451 3tbk_A RIG-I helicase domain; 63.7 14 0.00049 37.0 7.5 71 374-448 52-133 (555)
452 3p32_A Probable GTPase RV1496/ 63.5 59 0.002 30.5 11.3 16 160-175 81-96 (355)
453 3k1j_A LON protease, ATP-depen 63.4 5.9 0.0002 40.7 4.6 22 154-175 56-77 (604)
454 2yjt_D ATP-dependent RNA helic 67.3 1.5 5.1E-05 36.7 0.0 73 194-277 30-106 (170)
455 4g1u_C Hemin import ATP-bindin 63.4 3.9 0.00013 37.1 2.8 17 157-173 36-52 (266)
456 1odf_A YGR205W, hypothetical 3 63.2 4.8 0.00016 37.0 3.4 15 161-175 34-48 (290)
457 1ji0_A ABC transporter; ATP bi 63.1 4 0.00014 36.3 2.8 17 157-173 31-47 (240)
458 3aez_A Pantothenate kinase; tr 63.1 4.2 0.00014 37.9 3.0 26 158-185 90-115 (312)
459 2zu0_C Probable ATP-dependent 63.1 4.2 0.00014 36.9 3.0 17 157-173 45-61 (267)
460 3u4q_B ATP-dependent helicase/ 63.1 6.6 0.00023 44.0 5.2 55 348-405 319-374 (1166)
461 1mv5_A LMRA, multidrug resista 62.8 3.4 0.00012 36.9 2.3 17 157-173 27-43 (243)
462 1g8x_A Myosin II heavy chain f 62.8 9.4 0.00032 41.7 6.1 95 89-185 95-198 (1010)
463 1b0u_A Histidine permease; ABC 62.8 4.1 0.00014 36.9 2.8 17 157-173 31-47 (262)
464 1uf9_A TT1252 protein; P-loop, 62.7 3.1 0.00011 35.6 2.0 16 160-175 10-25 (203)
465 2ykg_A Probable ATP-dependent 62.6 20 0.00068 37.3 8.6 70 375-448 62-142 (696)
466 4akg_A Glutathione S-transfera 62.6 8.2 0.00028 46.8 6.0 47 130-177 892-942 (2695)
467 2d2e_A SUFC protein; ABC-ATPas 62.4 4.5 0.00015 36.3 3.0 17 157-173 28-44 (250)
468 3nh6_A ATP-binding cassette SU 62.3 3 0.0001 38.8 1.8 17 157-173 79-95 (306)
469 2olj_A Amino acid ABC transpor 62.2 4.3 0.00015 36.8 2.8 17 157-173 49-65 (263)
470 3eiq_A Eukaryotic initiation f 62.1 25 0.00086 33.6 8.7 73 373-448 107-189 (414)
471 4e22_A Cytidylate kinase; P-lo 62.1 4.4 0.00015 36.3 2.9 19 157-175 26-44 (252)
472 3vkg_A Dynein heavy chain, cyt 62.1 10 0.00035 46.6 6.6 46 130-176 875-924 (3245)
473 2ixe_A Antigen peptide transpo 61.8 4.4 0.00015 36.9 2.8 17 157-173 44-60 (271)
474 2v6i_A RNA helicase; membrane, 61.7 12 0.00041 36.6 6.2 68 194-273 171-238 (431)
475 2qi9_C Vitamin B12 import ATP- 61.7 4.4 0.00015 36.3 2.8 17 157-173 25-41 (249)
476 1vpl_A ABC transporter, ATP-bi 61.7 4.4 0.00015 36.5 2.8 17 157-173 40-56 (256)
477 2jlq_A Serine protease subunit 61.6 13 0.00044 36.6 6.5 68 194-274 188-256 (451)
478 1vht_A Dephospho-COA kinase; s 61.6 3.5 0.00012 35.9 2.2 16 160-175 6-21 (218)
479 2ihy_A ABC transporter, ATP-bi 61.4 4.4 0.00015 37.0 2.8 17 157-173 46-62 (279)
480 2p5t_B PEZT; postsegregational 61.2 2.6 8.7E-05 37.9 1.2 17 159-175 33-49 (253)
481 2grj_A Dephospho-COA kinase; T 60.6 3.9 0.00013 35.0 2.2 16 160-175 14-29 (192)
482 2yz2_A Putative ABC transporte 60.5 4.7 0.00016 36.5 2.8 17 157-173 32-48 (266)
483 2nq2_C Hypothetical ABC transp 60.3 4.7 0.00016 36.2 2.8 17 157-173 30-46 (253)
484 2ce7_A Cell division protein F 60.1 3.5 0.00012 40.9 2.0 17 159-175 50-66 (476)
485 1lsh_B Lipovitellin (LV-2); vi 60.0 2.1 7.1E-05 39.8 0.3 10 159-168 127-136 (319)
486 1np6_A Molybdopterin-guanine d 59.9 11 0.00037 31.6 4.8 15 160-174 8-22 (174)
487 2chq_A Replication factor C sm 59.3 8.1 0.00028 35.6 4.4 16 160-175 40-55 (319)
488 1ltq_A Polynucleotide kinase; 59.0 4 0.00014 37.6 2.2 16 160-175 4-19 (301)
489 3pxi_A Negative regulator of g 58.9 8.9 0.00031 40.6 5.1 18 158-175 201-218 (758)
490 1gtv_A TMK, thymidylate kinase 58.7 3.3 0.00011 35.8 1.4 15 161-175 3-17 (214)
491 2onk_A Molybdate/tungstate ABC 58.7 5.6 0.00019 35.4 2.9 15 159-173 25-39 (240)
492 2i1q_A DNA repair and recombin 57.6 7.7 0.00026 36.1 3.9 18 158-175 98-115 (322)
493 4h1g_A Maltose binding protein 57.3 6.8 0.00023 41.2 3.8 24 151-174 454-479 (715)
494 3hix_A ALR3790 protein; rhodan 57.1 8 0.00027 29.1 3.2 37 373-409 51-88 (106)
495 4gl2_A Interferon-induced heli 57.1 2.7 9.3E-05 44.1 0.7 71 374-448 56-142 (699)
496 2whx_A Serine protease/ntpase/ 57.1 22 0.00075 36.5 7.5 68 194-274 355-423 (618)
497 3flh_A Uncharacterized protein 56.9 6.7 0.00023 30.6 2.8 37 373-409 70-108 (124)
498 4eaq_A DTMP kinase, thymidylat 56.8 6.5 0.00022 34.6 3.0 26 157-184 25-50 (229)
499 1uj2_A Uridine-cytidine kinase 56.5 4.8 0.00017 36.0 2.2 16 160-175 24-39 (252)
500 3nhv_A BH2092 protein; alpha-b 56.5 9.4 0.00032 30.7 3.7 37 373-409 71-109 (144)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=5.2e-61 Score=485.30 Aligned_cols=343 Identities=40% Similarity=0.626 Sum_probs=317.4
Q ss_pred CCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCC
Q 010709 115 PAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDG 194 (503)
Q Consensus 115 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~ 194 (503)
..|.++.+|+++++++.+++.+..+||..|+++|.++|+.+++|+|+++++|||+|||++|++|++.++...+......+
T Consensus 50 ~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~ 129 (434)
T 2db3_A 50 DVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGR 129 (434)
T ss_dssp SCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTC
T ss_pred CCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCC
Confidence 66788999999999999999999999999999999999999999999999999999999999999999887654334457
Q ss_pred CeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEE
Q 010709 195 PLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVI 274 (503)
Q Consensus 195 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vV 274 (503)
+++||++|||+|+.|+++++++++... ++++.+++||.....+...+..+++|+|+||++|.+++.+....+.++++||
T Consensus 130 ~~~lil~PtreLa~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lV 208 (434)
T 2db3_A 130 PQVVIVSPTRELAIQIFNEARKFAFES-YLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVV 208 (434)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHTTTS-SCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEE
T ss_pred ccEEEEecCHHHHHHHHHHHHHHhccC-CcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEE
Confidence 899999999999999999999998654 5788899999998888888888999999999999999998888899999999
Q ss_pred ecchhHHhhCCCHHHHHHHHHhC--CCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhH
Q 010709 275 LDEADRMLDMGFEPQIREVMQNL--PDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEK 352 (503)
Q Consensus 275 iDEaH~l~~~~~~~~~~~il~~~--~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 352 (503)
+||||++++++|...+..++..+ ++..|+++||||+++.+..++..++.++..+.+.........+.+.+..+....|
T Consensus 209 lDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k 288 (434)
T 2db3_A 209 LDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAK 288 (434)
T ss_dssp EETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGH
T ss_pred EccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHH
Confidence 99999999999999999999885 6789999999999999999999999999999888877777889999999998889
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 010709 353 VDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD 432 (503)
Q Consensus 353 ~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~ 432 (503)
...+..++... ..++||||++++.|+.+++.|.+.++.+..+||++++.+|.++++.|++|+.+|||||+
T Consensus 289 ~~~l~~~l~~~----------~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~ 358 (434)
T 2db3_A 289 RSKLIEILSEQ----------ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS 358 (434)
T ss_dssp HHHHHHHHHHC----------CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG
T ss_pred HHHHHHHHHhC----------CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch
Confidence 88888777652 12499999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 433 VASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 433 ~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
++++|+|+|++++||+||+|.+..+|+||+||+||.
T Consensus 359 v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~ 394 (434)
T 2db3_A 359 VASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRV 394 (434)
T ss_dssp GGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCT
T ss_pred hhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccC
Confidence 999999999999999999999999999999999994
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.5e-56 Score=452.22 Aligned_cols=345 Identities=43% Similarity=0.696 Sum_probs=307.6
Q ss_pred CCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCC-----
Q 010709 115 PAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPV----- 189 (503)
Q Consensus 115 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~----- 189 (503)
..|.++.+|+++++++.+.+.|...||..|+++|.++++.++.++++++++|||+|||++|++|++..+......
T Consensus 9 ~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~ 88 (417)
T 2i4i_A 9 NCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRA 88 (417)
T ss_dssp TCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred cCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhc
Confidence 668888999999999999999999999999999999999999999999999999999999999999887654321
Q ss_pred --------CCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHH
Q 010709 190 --------GRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQ 261 (503)
Q Consensus 190 --------~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~ 261 (503)
....++++||++||++|+.|+++.+++++... ++.+..++|+.....+...+..+++|+|+||++|.+.+.
T Consensus 89 ~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~ 167 (417)
T 2i4i_A 89 MKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS-RVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMME 167 (417)
T ss_dssp HHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHH
T ss_pred cccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcC-CceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHH
Confidence 12234789999999999999999999998654 588899999999888888888889999999999999999
Q ss_pred cCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhC--CC--CCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 010709 262 QGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL--PD--KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPT 337 (503)
Q Consensus 262 ~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~--~~--~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (503)
...+.+.++++|||||||++.+++|...+..++... ++ ..|++++|||+++.+..+...++.++..+.........
T Consensus 168 ~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (417)
T 2i4i_A 168 RGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTS 247 (417)
T ss_dssp TTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CC
T ss_pred cCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCc
Confidence 888888999999999999999999999999998853 32 67899999999999999999999999888887776777
Q ss_pred CceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHH
Q 010709 338 ANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESAL 417 (503)
Q Consensus 338 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~ 417 (503)
..+.+.+..+....+...+..++... ...+++||||++++.++.+++.|...++.+..+||++++.+|.+++
T Consensus 248 ~~i~~~~~~~~~~~~~~~l~~~l~~~--------~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~ 319 (417)
T 2i4i_A 248 ENITQKVVWVEESDKRSFLLDLLNAT--------GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEAL 319 (417)
T ss_dssp SSEEEEEEECCGGGHHHHHHHHHHTC--------CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred cCceEEEEEeccHhHHHHHHHHHHhc--------CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHH
Confidence 78888888888888887777766542 2456799999999999999999999999999999999999999999
Q ss_pred HHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 418 RDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 418 ~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
+.|++|+.+|||||+++++|+|+|++++||++|+|.+...|+||+||+||.
T Consensus 320 ~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~ 370 (417)
T 2i4i_A 320 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRV 370 (417)
T ss_dssp HHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC-
T ss_pred HHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccC
Confidence 999999999999999999999999999999999999999999999999995
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=6.4e-56 Score=446.56 Aligned_cols=336 Identities=32% Similarity=0.529 Sum_probs=302.7
Q ss_pred CCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeE
Q 010709 118 APIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLA 197 (503)
Q Consensus 118 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~ 197 (503)
.+..+|+++++++.+.+.+..+||..|+++|.++++.+++|+++++++|||+|||++|++|++..+... ..++++
T Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~~~~ 108 (410)
T 2j0s_A 34 DVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ-----VRETQA 108 (410)
T ss_dssp CCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT-----SCSCCE
T ss_pred cCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc-----cCCceE
Confidence 345679999999999999999999999999999999999999999999999999999999998765321 236789
Q ss_pred EEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecc
Q 010709 198 LVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDE 277 (503)
Q Consensus 198 lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDE 277 (503)
||++|+++|+.|+++.+++++... ++.+..+.|+.........+..+++|+|+||++|.+.+.+....+.++++||+||
T Consensus 109 lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDE 187 (410)
T 2j0s_A 109 LILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDE 187 (410)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred EEEcCcHHHHHHHHHHHHHHhccC-CeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEcc
Confidence 999999999999999999998665 5888899999998888777878899999999999999998878889999999999
Q ss_pred hhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhh-HHHHH
Q 010709 278 ADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENE-KVDRL 356 (503)
Q Consensus 278 aH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~l 356 (503)
||++.+++|...+..++..+++..|++++|||+++.+..+...++.+|..+...........+.+.+..+.... +...+
T Consensus 188 ah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 267 (410)
T 2j0s_A 188 ADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL 267 (410)
T ss_dssp HHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHH
Confidence 99999999999999999999999999999999999998888999999988877666666677788777776554 66666
Q ss_pred HHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccc
Q 010709 357 LALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASR 436 (503)
Q Consensus 357 ~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 436 (503)
..++... ..+++||||++++.++.+++.|...++.+..+||++++.+|.++++.|++|+.+|||||+++++
T Consensus 268 ~~~~~~~---------~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 338 (410)
T 2j0s_A 268 CDLYDTL---------TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWAR 338 (410)
T ss_dssp HHHHHHH---------TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSS
T ss_pred HHHHHhc---------CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhC
Confidence 6655442 2347999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 437 GLDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 437 Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
|+|+|++++||++|+|.+...|+||+||+||.
T Consensus 339 Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~ 370 (410)
T 2j0s_A 339 GLDVPQVSLIINYDLPNNRELYIHRIGRSGRY 370 (410)
T ss_dssp SCCCTTEEEEEESSCCSSHHHHHHHHTTSSGG
T ss_pred cCCcccCCEEEEECCCCCHHHHHHhcccccCC
Confidence 99999999999999999999999999999995
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2e-54 Score=436.20 Aligned_cols=337 Identities=33% Similarity=0.538 Sum_probs=290.8
Q ss_pred CCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCe
Q 010709 117 PAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPL 196 (503)
Q Consensus 117 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~ 196 (503)
+....+|+++++++.+.+.+..+|+..|+++|.++++.+++|+++++++|||+|||++|++|++..+... ..+++
T Consensus 36 ~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~ 110 (414)
T 3eiq_A 36 NEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD-----LKATQ 110 (414)
T ss_dssp CCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT-----SCSCC
T ss_pred cchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc-----CCcee
Confidence 3456679999999999999999999999999999999999999999999999999999999999876442 23678
Q ss_pred EEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhh-CCCcEEEECcHHHHHHHHcCCCCCCCccEEEe
Q 010709 197 ALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVIL 275 (503)
Q Consensus 197 ~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vVi 275 (503)
+||++|+++|+.|+++.+++++... +..+....|+.........+. .+++|+|+||++|.+.+.+..+.+.++++||+
T Consensus 111 ~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vVi 189 (414)
T 3eiq_A 111 ALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVL 189 (414)
T ss_dssp EEEECSSHHHHHHHHHHHHHHGGGS-CCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEE
T ss_pred EEEEeChHHHHHHHHHHHHHHhccc-CceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEE
Confidence 9999999999999999999998665 578888888888777666655 67899999999999999988888899999999
Q ss_pred cchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhh-HHH
Q 010709 276 DEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENE-KVD 354 (503)
Q Consensus 276 DEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~ 354 (503)
||||++.++++...+..++..++++.|+++||||++..+..+...++.++..+...........+.+.+....... +..
T Consensus 190 DEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (414)
T 3eiq_A 190 DEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLD 269 (414)
T ss_dssp CSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHH
T ss_pred ECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHH
Confidence 9999999999999999999999999999999999999999999999999988877766666677777777665544 665
Q ss_pred HHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccc
Q 010709 355 RLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVA 434 (503)
Q Consensus 355 ~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 434 (503)
.+..++.. .+.+++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++
T Consensus 270 ~l~~~~~~---------~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 340 (414)
T 3eiq_A 270 TLCDLYET---------LTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLL 340 (414)
T ss_dssp HHHHHHHS---------SCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSC
T ss_pred HHHHHHHh---------CCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCcc
Confidence 55555433 245679999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 435 SRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 435 ~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
++|+|+|++++||++|+|.+..+|+||+||+||.
T Consensus 341 ~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~ 374 (414)
T 3eiq_A 341 ARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRF 374 (414)
T ss_dssp C--CCGGGCSCEEESSCCSSTHHHHHHSCCC---
T ss_pred ccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCC
Confidence 9999999999999999999999999999999995
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.9e-53 Score=427.21 Aligned_cols=334 Identities=31% Similarity=0.511 Sum_probs=297.1
Q ss_pred CcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEE
Q 010709 119 PIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLAL 198 (503)
Q Consensus 119 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~l 198 (503)
...+|+++++++.+.+.|..+||..|+++|.++++.+++++++++++|||+|||++|++|++..+... ..++++|
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~~l 93 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK-----LNKIQAL 93 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SCSCCEE
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc-----cCCccEE
Confidence 45679999999999999999999999999999999999999999999999999999999998875432 2356899
Q ss_pred EEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecch
Q 010709 199 VLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEA 278 (503)
Q Consensus 199 il~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEa 278 (503)
|++|+++|+.|+++.+++++... ++.+....|+............+++|+|+||++|.+.+.+....+.++++||+|||
T Consensus 94 il~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEa 172 (400)
T 1s2m_A 94 IMVPTRELALQTSQVVRTLGKHC-GISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEA 172 (400)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTT-TCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESH
T ss_pred EEcCCHHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCc
Confidence 99999999999999999998665 57888899998887777777788999999999999999887778899999999999
Q ss_pred hHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHH
Q 010709 279 DRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLA 358 (503)
Q Consensus 279 H~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 358 (503)
|++.+.+|...+..++..+++..|++++|||++..+...+..++.+|..+.... ......+.+.+..+....+...+..
T Consensus 173 H~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~l~~ 251 (400)
T 1s2m_A 173 DKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLME-ELTLKGITQYYAFVEERQKLHCLNT 251 (400)
T ss_dssp HHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCS-SCBCTTEEEEEEECCGGGHHHHHHH
T ss_pred hHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEecc-ccccCCceeEEEEechhhHHHHHHH
Confidence 999888888889999999988999999999999999999999999887664433 2344567777777777777777666
Q ss_pred HHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCC
Q 010709 359 LLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGL 438 (503)
Q Consensus 359 ~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gl 438 (503)
++.. ...+++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+
T Consensus 252 ~~~~---------~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gi 322 (400)
T 1s2m_A 252 LFSK---------LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGI 322 (400)
T ss_dssp HHHH---------SCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSC
T ss_pred HHhh---------cCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCC
Confidence 6543 2456899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 439 DVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 439 dip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
|+|++++||++|+|.+...|+||+||+||.
T Consensus 323 dip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~ 352 (400)
T 1s2m_A 323 DIQAVNVVINFDFPKTAETYLHRIGRSGRF 352 (400)
T ss_dssp CCTTEEEEEESSCCSSHHHHHHHHCBSSCT
T ss_pred CccCCCEEEEeCCCCCHHHHHHhcchhcCC
Confidence 999999999999999999999999999995
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=3.2e-53 Score=424.16 Aligned_cols=334 Identities=30% Similarity=0.492 Sum_probs=297.3
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEE
Q 010709 121 ESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (503)
Q Consensus 121 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil 200 (503)
..|+++++++.+.+.|..+|+..|+++|.++++.++.++++++++|||+|||++|++|++..+... ..++++||+
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~~~~lil 82 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVSVLVM 82 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC-----TTCCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc-----CCCeeEEEE
Confidence 469999999999999999999999999999999999999999999999999999999998775432 235689999
Q ss_pred cccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhh-CCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchh
Q 010709 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD 279 (503)
Q Consensus 201 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH 279 (503)
+|+++|+.|+++.++++.....++.+..+.|+.........+. ..++|+|+||++|...+.+....+.++++||+||||
T Consensus 83 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH 162 (391)
T 1xti_A 83 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD 162 (391)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHH
Confidence 9999999999999999987766788999999988776655554 447999999999999998877788999999999999
Q ss_pred HHhhC-CCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCC-CCCCceEEEEEEcChhhHHHHHH
Q 010709 280 RMLDM-GFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVS-SPTANVIQILEKVSENEKVDRLL 357 (503)
Q Consensus 280 ~l~~~-~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~ 357 (503)
++.++ ++...+..++...++..|++++|||+++.+...+..++.+|..+...... .....+.+.+..+....+...+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 242 (391)
T 1xti_A 163 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLF 242 (391)
T ss_dssp HHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHH
T ss_pred HHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHH
Confidence 99874 67888899999988899999999999999999999999999888765543 33455777778888888887777
Q ss_pred HHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccC
Q 010709 358 ALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRG 437 (503)
Q Consensus 358 ~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 437 (503)
.++.. ...+++||||++++.++.+++.|...++.+..+||++++.+|.++++.|++|+.+|||||+++++|
T Consensus 243 ~~l~~---------~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~G 313 (391)
T 1xti_A 243 DLLDV---------LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRG 313 (391)
T ss_dssp HHHHH---------SCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSC
T ss_pred HHHHh---------cCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcC
Confidence 76654 245689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 438 LDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 438 ldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
+|+|++++||++++|.+...|+||+||+||.
T Consensus 314 idi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~ 344 (391)
T 1xti_A 314 MDIERVNIAFNYDMPEDSDTYLHRVARAGRF 344 (391)
T ss_dssp BCCTTEEEEEESSCCSSHHHHHHHHCBCSSS
T ss_pred CCcccCCEEEEeCCCCCHHHHHHhcccccCC
Confidence 9999999999999999999999999999995
No 7
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=7.4e-53 Score=424.50 Aligned_cols=337 Identities=28% Similarity=0.430 Sum_probs=293.5
Q ss_pred CCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCC
Q 010709 115 PAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 192 (503)
Q Consensus 115 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~--~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~ 192 (503)
.......+|+++++++.+.+.+..+|+..|+++|.++++.++.+ +++++++|||+|||++|++|++..+... .
T Consensus 19 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~ 93 (412)
T 3fht_A 19 SPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----N 93 (412)
T ss_dssp STTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----S
T ss_pred CCccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc-----C
Confidence 33456778999999999999999999999999999999999987 8999999999999999999999876442 2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHc-CCCCCCCcc
Q 010709 193 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ-GNTSLSRVS 271 (503)
Q Consensus 193 ~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~-~~~~l~~~~ 271 (503)
.++++||++|+++|+.|+++.++++.....++.+....++...... ....++|+|+||++|.+.+.+ ..+.+.+++
T Consensus 94 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~ 170 (412)
T 3fht_A 94 KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIK 170 (412)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCC
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCc
Confidence 3568999999999999999999999877667888888877654332 234579999999999999865 455678999
Q ss_pred EEEecchhHHhh-CCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcCh-
Q 010709 272 FVILDEADRMLD-MGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSE- 349 (503)
Q Consensus 272 ~vViDEaH~l~~-~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 349 (503)
+||+||||++.+ .++...+..++..+++..|++++|||+++.+..+...++.++..+...........+.+.+.....
T Consensus 171 ~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (412)
T 3fht_A 171 VFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSR 250 (412)
T ss_dssp EEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSH
T ss_pred EEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCCh
Confidence 999999999987 578889999999999999999999999999999999999999988777766667777777776655
Q ss_pred hhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEE
Q 010709 350 NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILV 429 (503)
Q Consensus 350 ~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLv 429 (503)
..+...+..++... ..+++||||++++.++.+++.|...++.+..+||++++.+|.++++.|++|+.+|||
T Consensus 251 ~~~~~~l~~~~~~~---------~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv 321 (412)
T 3fht_A 251 DEKFQALCNLYGAI---------TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLV 321 (412)
T ss_dssp HHHHHHHHHHHHHH---------SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEE
T ss_pred HHHHHHHHHHHhhc---------CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEE
Confidence 45555555555432 345799999999999999999999999999999999999999999999999999999
Q ss_pred EccccccCCCCCCCCEEEEccCC------CChhHHHHhhCcceee
Q 010709 430 ATDVASRGLDVMGVAHVVNLDLP------KVLLAASESLCTTSFN 468 (503)
Q Consensus 430 aT~~~~~Gldip~v~~VI~~~~p------~s~~~~~Qr~GR~gR~ 468 (503)
||+++++|+|+|++++||++|+| .+..+|+||+||+||.
T Consensus 322 ~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~ 366 (412)
T 3fht_A 322 TTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRF 366 (412)
T ss_dssp ECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCT
T ss_pred EcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCC
Confidence 99999999999999999999999 5678999999999993
No 8
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.6e-52 Score=419.59 Aligned_cols=331 Identities=28% Similarity=0.468 Sum_probs=287.8
Q ss_pred CcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCe
Q 010709 119 PIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPL 196 (503)
Q Consensus 119 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~--~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~ 196 (503)
...+|+++++++.+.+.+...|+..|+++|.++++.++++ +++++++|||+|||++|++|++..+... ..+++
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~ 77 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE-----DASPQ 77 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----CCSCC
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC-----CCCcc
Confidence 3467999999999999999999999999999999999988 8999999999999999999998875432 24678
Q ss_pred EEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEec
Q 010709 197 ALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILD 276 (503)
Q Consensus 197 ~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViD 276 (503)
+||++|+++|+.|+++.+++++... ++.+....++..... ...+++|+|+||++|.+.+.+....+.++++||+|
T Consensus 78 ~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiD 152 (395)
T 3pey_A 78 AICLAPSRELARQTLEVVQEMGKFT-KITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLD 152 (395)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHhccc-CeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEE
Confidence 9999999999999999999998654 467777776654322 23468999999999999998877889999999999
Q ss_pred chhHHhh-CCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChh-hHHH
Q 010709 277 EADRMLD-MGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSEN-EKVD 354 (503)
Q Consensus 277 EaH~l~~-~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~k~~ 354 (503)
|||++.+ .++...+..+...++++.|++++|||+++.+..+...++.++..+...........+.+.+...... .+..
T Consensus 153 Eah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (395)
T 3pey_A 153 EADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFD 232 (395)
T ss_dssp THHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHH
T ss_pred ChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHH
Confidence 9999988 5788889999999999999999999999999999999999998887776666667777777776544 3443
Q ss_pred HHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccc
Q 010709 355 RLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVA 434 (503)
Q Consensus 355 ~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 434 (503)
.+..++.. ...+++||||++++.++.+++.|+..++.+..+||++++.+|.++++.|++|+.+|||||+++
T Consensus 233 ~l~~~~~~---------~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 303 (395)
T 3pey_A 233 VLTELYGL---------MTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVL 303 (395)
T ss_dssp HHHHHHTT---------TTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGG
T ss_pred HHHHHHHh---------ccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChh
Confidence 33333221 245689999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCEEEEccCCC------ChhHHHHhhCcceee
Q 010709 435 SRGLDVMGVAHVVNLDLPK------VLLAASESLCTTSFN 468 (503)
Q Consensus 435 ~~Gldip~v~~VI~~~~p~------s~~~~~Qr~GR~gR~ 468 (503)
++|+|+|++++||++|+|+ +..+|+||+||+||.
T Consensus 304 ~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~ 343 (395)
T 3pey_A 304 ARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRF 343 (395)
T ss_dssp SSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCT
T ss_pred hcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccC
Confidence 9999999999999999999 999999999999994
No 9
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.2e-51 Score=409.00 Aligned_cols=327 Identities=37% Similarity=0.570 Sum_probs=291.3
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEE
Q 010709 120 IESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLAL 198 (503)
Q Consensus 120 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~-~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~l 198 (503)
..+|+++++++.+.+.|...|+..|+++|.++++.++++ +++++++|||+|||++|++|++..+... .++++|
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~------~~~~~l 78 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN------NGIEAI 78 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS------SSCCEE
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc------CCCcEE
Confidence 346999999999999999999999999999999999988 6899999999999999999988765432 367899
Q ss_pred EEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecch
Q 010709 199 VLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEA 278 (503)
Q Consensus 199 il~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEa 278 (503)
|++|+++|+.|+++.++++.... ++.+....|+.........+. +++|+|+||++|.+.+......+.++++||+|||
T Consensus 79 il~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEa 156 (367)
T 1hv8_A 79 ILTPTRELAIQVADEIESLKGNK-NLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEA 156 (367)
T ss_dssp EECSCHHHHHHHHHHHHHHHCSS-CCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETH
T ss_pred EEcCCHHHHHHHHHHHHHHhCCC-CceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCc
Confidence 99999999999999999998654 578888899888776655554 6899999999999999887788899999999999
Q ss_pred hHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHH
Q 010709 279 DRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLA 358 (503)
Q Consensus 279 H~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 358 (503)
|++.++++...+..++..+++..+++++|||+++........++.++..+.... ...+.+.+..+....+...+..
T Consensus 157 h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~ 232 (367)
T 1hv8_A 157 DEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI----NANIEQSYVEVNENERFEALCR 232 (367)
T ss_dssp HHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS----SSSSEEEEEECCGGGHHHHHHH
T ss_pred hHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC----CCCceEEEEEeChHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998876665432 2356677777777888777766
Q ss_pred HHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCC
Q 010709 359 LLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGL 438 (503)
Q Consensus 359 ~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gl 438 (503)
.+. ....++||||++++.++.+++.|...++.+..+||++++.+|.++++.|++|+.+|||||+++++|+
T Consensus 233 ~l~----------~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gi 302 (367)
T 1hv8_A 233 LLK----------NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGI 302 (367)
T ss_dssp HHC----------STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHC
T ss_pred HHh----------cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCC
Confidence 653 2445799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 439 DVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 439 dip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
|+|++++||++++|.+..+|+||+||+||.
T Consensus 303 d~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~ 332 (367)
T 1hv8_A 303 DVNDLNCVINYHLPQNPESYMHRIGRTGRA 332 (367)
T ss_dssp CCSCCSEEEESSCCSCHHHHHHHSTTTCCS
T ss_pred CcccCCEEEEecCCCCHHHhhhcccccccC
Confidence 999999999999999999999999999995
No 10
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=3.4e-52 Score=436.37 Aligned_cols=336 Identities=29% Similarity=0.414 Sum_probs=280.2
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHh--cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHH
Q 010709 128 LHPSIMKDIEFHEYTRPTSIQAQAMPVAL--SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE 205 (503)
Q Consensus 128 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~--~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~ 205 (503)
+++++++.+..+||..|+++|.++++.++ .++++++++|||+|||++|++|++..+..... ....++++|||+||++
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~-~~~~~~~~lvl~Ptr~ 106 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-DSQYMVKAVIVAPTRD 106 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-SSTTSCCEEEECSSHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc-cccCCCeEEEEcchHH
Confidence 99999999999999999999999999999 67899999999999999999999988776432 2234578999999999
Q ss_pred HHHHHHHHHHHHhc---cCCCceEEEEECCccHHHHHHHhh-CCCcEEEECcHHHHHHHHcC-CCCCCCccEEEecchhH
Q 010709 206 LAQQIEKEVKALSR---SLDSFKTAIVVGGTNIAEQRSELR-GGVSIVVATPGRFLDHLQQG-NTSLSRVSFVILDEADR 280 (503)
Q Consensus 206 La~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~-~~~l~~~~~vViDEaH~ 280 (503)
|+.|+++.++++.. ....+.+..++|+.........+. .+++|+|+||++|.+++.+. ...+..+++|||||||+
T Consensus 107 La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 186 (579)
T 3sqw_A 107 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 186 (579)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHH
Confidence 99999999999864 233567888899988777666654 47999999999999888764 34578899999999999
Q ss_pred HhhCCCHHHHHHHHHhCC-------CCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCC----CCCCceEEEEEEcCh
Q 010709 281 MLDMGFEPQIREVMQNLP-------DKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVS----SPTANVIQILEKVSE 349 (503)
Q Consensus 281 l~~~~~~~~~~~il~~~~-------~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 349 (503)
+.+++|...+..++..++ +.+|+++||||+++.+..++..++.++..+...... .....+.+.+.....
T Consensus 187 l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 266 (579)
T 3sqw_A 187 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 266 (579)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred hhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecc
Confidence 999999999988877653 367999999999999999999999988777654322 233345555554443
Q ss_pred -hhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHC---CCeEEEEcCCCCHHHHHHHHHHHhcCCC
Q 010709 350 -NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE---GLHAVALHGGRNQSDRESALRDFRNGST 425 (503)
Q Consensus 350 -~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~---~~~v~~lh~~~~~~~r~~~~~~f~~g~~ 425 (503)
..+...++..+...... ..+..++||||+++..|+.+++.|... ++.+..+||++++.+|.++++.|++|+.
T Consensus 267 ~~~~~~~~~~~l~~~~~~----~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~ 342 (579)
T 3sqw_A 267 FANSIFAAVEHIKKQIKE----RDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDES 342 (579)
T ss_dssp TTHHHHHHHHHHHHHHHH----TTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSS
T ss_pred hhhhHHHHHHHHHHHHhh----cCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCC
Confidence 33333444433332221 134568999999999999999999887 8999999999999999999999999999
Q ss_pred cEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 426 NILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 426 ~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
+|||||+++++|||+|++++||++|+|.+...|+||+||+||.
T Consensus 343 ~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~ 385 (579)
T 3sqw_A 343 GILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARS 385 (579)
T ss_dssp EEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCT
T ss_pred eEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccC
Confidence 9999999999999999999999999999999999999999994
No 11
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=2.3e-53 Score=425.57 Aligned_cols=337 Identities=32% Similarity=0.511 Sum_probs=187.8
Q ss_pred CCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCC
Q 010709 116 APAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGP 195 (503)
Q Consensus 116 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~ 195 (503)
...+...|+++++++.+.+.+..+|+..|+++|.++++.+++++++++++|||+|||++|++|++..+... ..++
T Consensus 16 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~-----~~~~ 90 (394)
T 1fuu_A 16 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VKAP 90 (394)
T ss_dssp SCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----CCSC
T ss_pred cccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc-----CCCC
Confidence 44556789999999999999999999999999999999999999999999999999999999999875442 2367
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEe
Q 010709 196 LALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVIL 275 (503)
Q Consensus 196 ~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vVi 275 (503)
++||++|+++|+.|+++.++++.... ++.+..+.|+....+....+. +++|+|+||++|.+.+.+....+.++++||+
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIi 168 (394)
T 1fuu_A 91 QALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 168 (394)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccC-CeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 89999999999999999999988665 588888999888766555444 5899999999999999887778889999999
Q ss_pred cchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhh-HHH
Q 010709 276 DEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENE-KVD 354 (503)
Q Consensus 276 DEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~ 354 (503)
||||++.+.++...+..++..+++..|++++|||+++.+......++.+|..+...........+.+.+..+.... +..
T Consensus 169 DEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (394)
T 1fuu_A 169 DEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYE 248 (394)
T ss_dssp ETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----------------------
T ss_pred EChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHH
Confidence 9999999999999999999999999999999999999999999999999988877665555555555555444333 433
Q ss_pred HHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccc
Q 010709 355 RLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVA 434 (503)
Q Consensus 355 ~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 434 (503)
.+..++.. ...+++||||++++.++.+++.|...++.+..+||++++.+|.++++.|++|+.+|||||+++
T Consensus 249 ~l~~~~~~---------~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~ 319 (394)
T 1fuu_A 249 CLTDLYDS---------ISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLL 319 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhc---------CCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChh
Confidence 33333322 134579999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 435 SRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 435 ~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
++|+|+|++++||++|+|.+...|+||+||+||.
T Consensus 320 ~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~ 353 (394)
T 1fuu_A 320 ARGIDVQQVSLVINYDLPANKENYIHRIGRGGRF 353 (394)
T ss_dssp ----------------------------------
T ss_pred hcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCC
Confidence 9999999999999999999999999999999995
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.5e-51 Score=431.27 Aligned_cols=336 Identities=29% Similarity=0.416 Sum_probs=279.0
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHh--cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHH
Q 010709 128 LHPSIMKDIEFHEYTRPTSIQAQAMPVAL--SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE 205 (503)
Q Consensus 128 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~--~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~ 205 (503)
+++.+++.+..+||..|+++|.++++.++ .++++++++|||+|||++|++|++..+..... ....++++|||+||++
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~-~~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-DSQYMVKAVIVAPTRD 157 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-SSTTSCCEEEECSSHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccc-cccCCeeEEEEcCcHH
Confidence 99999999999999999999999999999 67899999999999999999999998876532 1233568999999999
Q ss_pred HHHHHHHHHHHHhcc---CCCceEEEEECCccHHHHHHHh-hCCCcEEEECcHHHHHHHHcC-CCCCCCccEEEecchhH
Q 010709 206 LAQQIEKEVKALSRS---LDSFKTAIVVGGTNIAEQRSEL-RGGVSIVVATPGRFLDHLQQG-NTSLSRVSFVILDEADR 280 (503)
Q Consensus 206 La~q~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ilv~Tp~~l~~~l~~~-~~~l~~~~~vViDEaH~ 280 (503)
|+.|+++.++++... .....+..++|+.........+ ..+++|+|+||++|.+++.+. ...+..+++|||||||+
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 237 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 237 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHH
Confidence 999999999997542 2346688888988877666555 457999999999999888764 23578899999999999
Q ss_pred HhhCCCHHHHHHHHHhC-------CCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCC----CCCCceEEEEEEcCh
Q 010709 281 MLDMGFEPQIREVMQNL-------PDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVS----SPTANVIQILEKVSE 349 (503)
Q Consensus 281 l~~~~~~~~~~~il~~~-------~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 349 (503)
+.+++|...+..++..+ .+..|+++||||+++.+..++..++.++..+...... .....+.+.+.....
T Consensus 238 l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (563)
T 3i5x_A 238 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 317 (563)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred HhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECch
Confidence 99999999998887665 3378999999999999999999999988777654322 233345555544443
Q ss_pred -hhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHC---CCeEEEEcCCCCHHHHHHHHHHHhcCCC
Q 010709 350 -NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE---GLHAVALHGGRNQSDRESALRDFRNGST 425 (503)
Q Consensus 350 -~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~---~~~v~~lh~~~~~~~r~~~~~~f~~g~~ 425 (503)
..+...+...+...... ..+..++||||+++..|+.+++.|... ++.+..+||++++.+|..+++.|++|+.
T Consensus 318 ~~~~~~~~~~~l~~~~~~----~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~ 393 (563)
T 3i5x_A 318 FANSIFAAVEHIKKQIKE----RDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDES 393 (563)
T ss_dssp TTHHHHHHHHHHHHHHHH----TTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSS
T ss_pred hHhhHHHHHHHHHHHHhh----cCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCC
Confidence 33333444433332221 134568999999999999999999886 8999999999999999999999999999
Q ss_pred cEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 426 NILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 426 ~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
+|||||+++++|||+|++++||++|+|.+...|+||+||+||.
T Consensus 394 ~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~ 436 (563)
T 3i5x_A 394 GILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARS 436 (563)
T ss_dssp EEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCT
T ss_pred CEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccC
Confidence 9999999999999999999999999999999999999999994
No 13
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.5e-53 Score=437.46 Aligned_cols=334 Identities=28% Similarity=0.436 Sum_probs=179.4
Q ss_pred CCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCC
Q 010709 118 APIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGP 195 (503)
Q Consensus 118 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~--~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~ 195 (503)
.+..+|+++++++.+++.|..+||..|+++|.++++.++.+ ++++++||||+|||++|++|++..+... ..++
T Consensus 89 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~-----~~~~ 163 (479)
T 3fmp_B 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NKYP 163 (479)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT-----SCSC
T ss_pred cCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc-----CCCC
Confidence 45678999999999999999999999999999999999987 8899999999999999999998765432 2356
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHc-CCCCCCCccEEE
Q 010709 196 LALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ-GNTSLSRVSFVI 274 (503)
Q Consensus 196 ~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~-~~~~l~~~~~vV 274 (503)
++||++|+++|+.|+++.++++......+.+....++...... ....++|+|+||++|.+++.+ ..+.+.++++||
T Consensus 164 ~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iV 240 (479)
T 3fmp_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV 240 (479)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEE
T ss_pred cEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEE
Confidence 8999999999999999999999877666778877777654321 234579999999999999866 345678999999
Q ss_pred ecchhHHhh-CCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcCh-hhH
Q 010709 275 LDEADRMLD-MGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSE-NEK 352 (503)
Q Consensus 275 iDEaH~l~~-~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k 352 (503)
|||||++.+ .++...+..++..+++.+|++++|||++..+..++..++.+|..+...........+.+.+..+.. ..+
T Consensus 241 iDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (479)
T 3fmp_B 241 LDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEK 320 (479)
T ss_dssp ECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC----------------------
T ss_pred EECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHH
Confidence 999999987 578888999999999999999999999999999999999999988887766666666666655544 344
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 010709 353 VDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD 432 (503)
Q Consensus 353 ~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~ 432 (503)
...+..++... ..+++||||+++..|+.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+
T Consensus 321 ~~~l~~~~~~~---------~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~ 391 (479)
T 3fmp_B 321 FQALCNLYGAI---------TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN 391 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhhc---------cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc
Confidence 44444444332 334799999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCEEEEccCC------CChhHHHHhhCcceee
Q 010709 433 VASRGLDVMGVAHVVNLDLP------KVLLAASESLCTTSFN 468 (503)
Q Consensus 433 ~~~~Gldip~v~~VI~~~~p------~s~~~~~Qr~GR~gR~ 468 (503)
++++|+|+|++++||+||+| .+...|+||+||+||.
T Consensus 392 ~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~ 433 (479)
T 3fmp_B 392 VCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRF 433 (479)
T ss_dssp ------------------------------------------
T ss_pred ccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccC
Confidence 99999999999999999999 4678999999999994
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1e-49 Score=390.39 Aligned_cols=310 Identities=34% Similarity=0.513 Sum_probs=269.2
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHH
Q 010709 128 LHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELA 207 (503)
Q Consensus 128 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La 207 (503)
+++.+.+.+..+|+..|+++|.++++.+++++++++++|||+|||++|++|++.. ++++||++|+++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-----------~~~~liv~P~~~L~ 69 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-----------GMKSLVVTPTRELT 69 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----------TCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-----------cCCEEEEeCCHHHH
Confidence 4688999999999999999999999999999999999999999999999988764 46799999999999
Q ss_pred HHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCH
Q 010709 208 QQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFE 287 (503)
Q Consensus 208 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~ 287 (503)
.|+++.+++++... +..+..++|+.........+. .++|+|+||++|.+.+.+....+.++++||+||||++.++++.
T Consensus 70 ~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~ 147 (337)
T 2z0m_A 70 RQVASHIRDIGRYM-DTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFI 147 (337)
T ss_dssp HHHHHHHHHHTTTS-CCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhc-CCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccH
Confidence 99999999998655 478888999888776655554 4899999999999998887777889999999999999999999
Q ss_pred HHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhh
Q 010709 288 PQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLA 367 (503)
Q Consensus 288 ~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~ 367 (503)
..+..++..++...+++++|||+++.+......++.++..+... .....+.+.+..+....+. ....+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~------ 216 (337)
T 2z0m_A 148 DDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDWRS--KVQALR------ 216 (337)
T ss_dssp HHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSSHH--HHHHHH------
T ss_pred HHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHHHH--HHHHHH------
Confidence 99999999999999999999999999999999999988776432 2334455555555543322 112221
Q ss_pred hccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEE
Q 010709 368 EKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVV 447 (503)
Q Consensus 368 ~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI 447 (503)
....+++||||++++.++.+++.|. .+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|++++||
T Consensus 217 ---~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi 289 (337)
T 2z0m_A 217 ---ENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVI 289 (337)
T ss_dssp ---TCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEE
T ss_pred ---hCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEE
Confidence 1355689999999999999999886 678999999999999999999999999999999999999999999999
Q ss_pred EccCCCChhHHHHhhCcceee
Q 010709 448 NLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 448 ~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
++++|.+...|+||+||+||.
T Consensus 290 ~~~~~~s~~~~~Q~~GR~gR~ 310 (337)
T 2z0m_A 290 NFDAPQDLRTYIHRIGRTGRM 310 (337)
T ss_dssp ESSCCSSHHHHHHHHTTBCGG
T ss_pred EecCCCCHHHhhHhcCccccC
Confidence 999999999999999999995
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.1e-49 Score=413.84 Aligned_cols=320 Identities=16% Similarity=0.237 Sum_probs=258.5
Q ss_pred cccCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 010709 123 FTDMCLHPSIMKDIEF-HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (503)
Q Consensus 123 ~~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~ 201 (503)
+.++++++.+.+.|+. +||..|+|+|.++++.+++|+|+++++|||+|||++|++|++.. ++++|||+
T Consensus 23 ~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~-----------~g~~lVis 91 (591)
T 2v1x_A 23 KEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS-----------DGFTLVIC 91 (591)
T ss_dssp CSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS-----------SSEEEEEC
T ss_pred cccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc-----------CCcEEEEe
Confidence 3457899999999998 69999999999999999999999999999999999999999852 46899999
Q ss_pred ccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHH------hhCCCcEEEECcHHHH------HHHHcCCCCCCC
Q 010709 202 PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSE------LRGGVSIVVATPGRFL------DHLQQGNTSLSR 269 (503)
Q Consensus 202 Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~Ilv~Tp~~l~------~~l~~~~~~l~~ 269 (503)
|+++|+.|+.+.++++ ++.+..+.++....+.... .....+|+|+||++|. +.+.+ ...+.+
T Consensus 92 P~~~L~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~~~ 165 (591)
T 2v1x_A 92 PLISLMEDQLMVLKQL-----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARR 165 (591)
T ss_dssp SCHHHHHHHHHHHHHH-----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHTTC
T ss_pred CHHHHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhccC
Confidence 9999999999999987 3677888888776544322 2457899999999874 22322 334678
Q ss_pred ccEEEecchhHHhhCC--CHHHHHH--HHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEE
Q 010709 270 VSFVILDEADRMLDMG--FEPQIRE--VMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILE 345 (503)
Q Consensus 270 ~~~vViDEaH~l~~~~--~~~~~~~--il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (503)
+++|||||||++.+++ |.+.+.. .+....++.+++++|||+++.+...+..++..+....+.. .....++...+.
T Consensus 166 i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-~~~r~nl~~~v~ 244 (591)
T 2v1x_A 166 FTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-SFNRPNLYYEVR 244 (591)
T ss_dssp EEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-CCCCTTEEEEEE
T ss_pred CcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-CCCCcccEEEEE
Confidence 9999999999999887 7776654 3444456789999999999998888888876543332222 222334443333
Q ss_pred EcC--hhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcC
Q 010709 346 KVS--ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNG 423 (503)
Q Consensus 346 ~~~--~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g 423 (503)
... ...+...+..++... .+..++||||++++.++.+++.|...|+.+..+||+|++.+|.++++.|++|
T Consensus 245 ~~~~~~~~~~~~l~~~l~~~--------~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g 316 (591)
T 2v1x_A 245 QKPSNTEDFIEDIVKLINGR--------YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSAN 316 (591)
T ss_dssp ECCSSHHHHHHHHHHHHTTT--------TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred eCCCcHHHHHHHHHHHHHHh--------ccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcC
Confidence 322 223344444443221 2456799999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 424 STNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 424 ~~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
+.+|||||+++++|||+|+|++||+|++|++++.|+||+||+||.
T Consensus 317 ~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~ 361 (591)
T 2v1x_A 317 EIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRD 361 (591)
T ss_dssp SSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTT
T ss_pred CCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcC
Confidence 999999999999999999999999999999999999999999994
No 16
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.2e-51 Score=418.44 Aligned_cols=357 Identities=25% Similarity=0.384 Sum_probs=238.7
Q ss_pred CCCHHHHHHHHHHcCceEEecCCCCCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CCeEEEccC
Q 010709 90 RFNPEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSG--RDLLGCAET 167 (503)
Q Consensus 90 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~--~~vii~~~T 167 (503)
...++....+.+.++..... ..+.|.....|...++++.+.+.+...|+..|+++|.++++.++++ +++++++||
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~---~~~~p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apT 167 (508)
T 3fho_A 91 XXXXXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQS 167 (508)
T ss_dssp ---------------------------------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCS
T ss_pred cccccccccccccccccccc---ccccccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCC
Confidence 33444455554444433221 1133455556777789999999999999999999999999999988 899999999
Q ss_pred CCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCc
Q 010709 168 GSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVS 247 (503)
Q Consensus 168 GsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (503)
|+|||++|+++++..+... ..++++||++|+++|+.|+++.+++++... .+.+....++..... ...+++
T Consensus 168 GsGKT~~~~~~il~~l~~~-----~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~ 237 (508)
T 3fho_A 168 GTGKTAAFALTMLSRVDAS-----VPKPQAICLAPSRELARQIMDVVTEMGKYT-EVKTAFGIKDSVPKG----AKIDAQ 237 (508)
T ss_dssp STTSHHHHHHHHHHHSCTT-----CCSCCEEEECSCHHHHHHHHHHHHHHSTTS-SCCEEC--------------CCCCS
T ss_pred CccHHHHHHHHHHHHHHhC-----CCCceEEEEECcHHHHHHHHHHHHHhCCcc-CeeEEEEeCCccccc----ccCCCC
Confidence 9999999999999876442 235689999999999999999999998654 344444444433221 234689
Q ss_pred EEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhh-CCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCe
Q 010709 248 IVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD-MGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPV 326 (503)
Q Consensus 248 Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~-~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~ 326 (503)
|+|+||++|.+.+.+..+.+.++++|||||||++.+ .++...+..++..++++.|++++|||+++.+..+...+..++.
T Consensus 238 Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~ 317 (508)
T 3fho_A 238 IVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNAN 317 (508)
T ss_dssp EEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCE
T ss_pred EEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCe
Confidence 999999999999988888899999999999999987 5799999999999999999999999999999999999999998
Q ss_pred EEEeCCCCCCCCceEEEEEEcCh-hhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEc
Q 010709 327 QVKVGKVSSPTANVIQILEKVSE-NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALH 405 (503)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh 405 (503)
.+...........+.+.+..... ..+...+..++.. ...+++||||++++.++.+++.|.+.++.+..+|
T Consensus 318 ~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~---------~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~h 388 (508)
T 3fho_A 318 EIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGL---------LTIGQSIIFCKKKDTAEEIARRMTADGHTVACLT 388 (508)
T ss_dssp EECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC------------CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC
T ss_pred EEEeccccCCcccceEEEEECCchHHHHHHHHHHHHh---------cCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEe
Confidence 87766655555555566555543 3444444444432 2346799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCC------CChhHHHHhhCcceee
Q 010709 406 GGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLP------KVLLAASESLCTTSFN 468 (503)
Q Consensus 406 ~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p------~s~~~~~Qr~GR~gR~ 468 (503)
|++++.+|..+++.|++|+.+|||||+++++|+|+|++++||++|+| .+...|+||+||+||.
T Consensus 389 g~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~ 457 (508)
T 3fho_A 389 GNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRF 457 (508)
T ss_dssp -----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC--
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCC
Confidence 99999999999999999999999999999999999999999999999 8899999999999994
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=6.6e-49 Score=404.13 Aligned_cols=317 Identities=19% Similarity=0.283 Sum_probs=256.1
Q ss_pred CCcccCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEE
Q 010709 121 ESFTDMCLHPSIMKDIEF-HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (503)
Q Consensus 121 ~~~~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~li 199 (503)
.+|+++++++.+.+.|+. +|+..|+++|.++++.+++|+|+++++|||+|||++|++|++.. ++.+||
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----------~g~~lv 70 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-----------NGLTVV 70 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-----------SSEEEE
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-----------CCCEEE
Confidence 468999999999999998 89999999999999999999999999999999999999998853 367999
Q ss_pred EcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHH----HhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEe
Q 010709 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRS----ELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVIL 275 (503)
Q Consensus 200 l~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vVi 275 (503)
++|+++|+.|+.+.++.++ +.+..+.++....+... ...+..+|+|+||++|........+...++++|||
T Consensus 71 i~P~~aL~~q~~~~l~~~g-----i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vVi 145 (523)
T 1oyw_A 71 VSPLISLMKDQVDQLQANG-----VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAV 145 (523)
T ss_dssp ECSCHHHHHHHHHHHHHTT-----CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEE
T ss_pred ECChHHHHHHHHHHHHHcC-----CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEE
Confidence 9999999999999998863 66777777776544322 22456899999999995322222234578999999
Q ss_pred cchhHHhhCC--CHHHHHHH---HHhCCCCCcEEEEEeeCCHHHHHHHHHhc--CCCeEEEeCCCCCCCCceEEEEEEcC
Q 010709 276 DEADRMLDMG--FEPQIREV---MQNLPDKHQTLLFSATMPVEIEALAQEYL--TDPVQVKVGKVSSPTANVIQILEKVS 348 (503)
Q Consensus 276 DEaH~l~~~~--~~~~~~~i---l~~~~~~~q~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (503)
||||++.++| |...+..+ ...+ ++.+++++|||+++.....+...+ .++..+ .... ...++...+ ..
T Consensus 146 DEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~~--~r~~l~~~v--~~ 219 (523)
T 1oyw_A 146 DEAHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISSF--DRPNIRYML--ME 219 (523)
T ss_dssp SSGGGGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEE-ECCC--CCTTEEEEE--EE
T ss_pred eCccccCcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE-eCCC--CCCceEEEE--Ee
Confidence 9999998876 76665543 4444 468899999999988765444443 345433 3222 223333332 23
Q ss_pred hhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEE
Q 010709 349 ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNIL 428 (503)
Q Consensus 349 ~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vL 428 (503)
...+...+...+.. .+.+++||||++++.++.+++.|+..|+.+..+||++++++|.++++.|++|+.+||
T Consensus 220 ~~~~~~~l~~~l~~---------~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vl 290 (523)
T 1oyw_A 220 KFKPLDQLMRYVQE---------QRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIV 290 (523)
T ss_dssp CSSHHHHHHHHHHH---------TTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEE
T ss_pred CCCHHHHHHHHHHh---------cCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEE
Confidence 34556666666544 244579999999999999999999999999999999999999999999999999999
Q ss_pred EEccccccCCCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 429 VATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 429 vaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
|||+++++|||+|++++||++++|+++++|+||+||+||.
T Consensus 291 VaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~ 330 (523)
T 1oyw_A 291 VATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRD 330 (523)
T ss_dssp EECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTT
T ss_pred EEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCC
Confidence 9999999999999999999999999999999999999994
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=2.2e-47 Score=384.55 Aligned_cols=302 Identities=19% Similarity=0.227 Sum_probs=241.6
Q ss_pred HHHHHHH-CCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHH
Q 010709 132 IMKDIEF-HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI 210 (503)
Q Consensus 132 l~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~ 210 (503)
+.+.++. +++ .|+++|.++++.+++|+++++++|||+|||++|++|++... . .++++||++||++|+.|+
T Consensus 10 ~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~-~-------~~~~~lil~Pt~~L~~q~ 80 (414)
T 3oiy_A 10 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA-R-------KGKKSALVFPTVTLVKQT 80 (414)
T ss_dssp HHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH-T-------TTCCEEEEESSHHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh-c-------CCCEEEEEECCHHHHHHH
Confidence 3344444 355 89999999999999999999999999999999988877654 1 267899999999999999
Q ss_pred HHHHHHHhccCCCceEEEEECCccH---HHHHHHhhCC-CcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhh---
Q 010709 211 EKEVKALSRSLDSFKTAIVVGGTNI---AEQRSELRGG-VSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD--- 283 (503)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~--- 283 (503)
++.+++++. .++.+..++|+... ..+...+..+ ++|+|+||++|.+++.. +.+.++++||+||||++.+
T Consensus 81 ~~~~~~~~~--~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~ 156 (414)
T 3oiy_A 81 LERLQKLAD--EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASR 156 (414)
T ss_dssp HHHHHHHCC--SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHH
T ss_pred HHHHHHHcc--CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccc
Confidence 999999876 36889999999987 4445555544 99999999999888764 5677899999999987654
Q ss_pred --------CCCHHH-HHHHHHhCC-----------CCCcEEEEEee-CCHHHH-HHHHHhcCCCeEEEeCCCCCCCCceE
Q 010709 284 --------MGFEPQ-IREVMQNLP-----------DKHQTLLFSAT-MPVEIE-ALAQEYLTDPVQVKVGKVSSPTANVI 341 (503)
Q Consensus 284 --------~~~~~~-~~~il~~~~-----------~~~q~i~~SAT-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (503)
.+|... +..++..++ +..|++++||| .|..+. .+...++. +...........+.
T Consensus 157 ~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~ 232 (414)
T 3oiy_A 157 NIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNIT 232 (414)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEE
T ss_pred hhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccch
Confidence 667777 778887765 78999999999 555543 23333332 12223334445566
Q ss_pred EEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEE-EEcCCCCHHHHHHHHHHH
Q 010709 342 QILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAV-ALHGGRNQSDRESALRDF 420 (503)
Q Consensus 342 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~-~lh~~~~~~~r~~~~~~f 420 (503)
+.+.... +...+..++... .+++||||+++..|+.+++.|...|+.+. .+||. +|. ++.|
T Consensus 233 ~~~~~~~---~~~~l~~~l~~~----------~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f 293 (414)
T 3oiy_A 233 HVRISSR---SKEKLVELLEIF----------RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDF 293 (414)
T ss_dssp EEEESSC---CHHHHHHHHHHH----------CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHH
T ss_pred heeeccC---HHHHHHHHHHHc----------CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHH
Confidence 6666553 344445554441 14699999999999999999999999998 89984 343 9999
Q ss_pred hcCCCcEEEE----ccccccCCCCCC-CCEEEEccCC--CChhHHHHhhCcceeee
Q 010709 421 RNGSTNILVA----TDVASRGLDVMG-VAHVVNLDLP--KVLLAASESLCTTSFNI 469 (503)
Q Consensus 421 ~~g~~~vLva----T~~~~~Gldip~-v~~VI~~~~p--~s~~~~~Qr~GR~gR~~ 469 (503)
++|+.+|||| |+++++|+|+|+ |++||+||+| .+...|+||+||+||..
T Consensus 294 ~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g 349 (414)
T 3oiy_A 294 KVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRIL 349 (414)
T ss_dssp HTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEE
T ss_pred hCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCC
Confidence 9999999999 999999999999 9999999999 99999999999999964
No 19
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.4e-45 Score=395.84 Aligned_cols=322 Identities=18% Similarity=0.228 Sum_probs=250.0
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEE
Q 010709 121 ESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPV-ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (503)
Q Consensus 121 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~li 199 (503)
.+|+++++++.+.+.+...||..|+++|.++++. +.++++++++||||+|||++|.++++..+... +++++|
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~il~ 80 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN-------GGKAIY 80 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-------CSEEEE
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-------CCeEEE
Confidence 4699999999999999999999999999999999 77899999999999999999999999876643 578999
Q ss_pred EcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchh
Q 010709 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD 279 (503)
Q Consensus 200 l~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH 279 (503)
++|+++|+.|+++.++.+... ++.+...+|+....+. .. .+++|+|+||++|..++.+....+.++++|||||||
T Consensus 81 i~P~r~La~q~~~~~~~~~~~--g~~v~~~~G~~~~~~~--~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H 155 (715)
T 2va8_A 81 VTPLRALTNEKYLTFKDWELI--GFKVAMTSGDYDTDDA--WL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELH 155 (715)
T ss_dssp ECSCHHHHHHHHHHHGGGGGG--TCCEEECCSCSSSCCG--GG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGG
T ss_pred EeCcHHHHHHHHHHHHHhhcC--CCEEEEEeCCCCCchh--hc-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechh
Confidence 999999999999999655432 5788888887655432 12 368999999999999988866668899999999999
Q ss_pred HHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEE------------EEEc
Q 010709 280 RMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQI------------LEKV 347 (503)
Q Consensus 280 ~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~ 347 (503)
++.+.+++..+..++.+++ +.|+|+||||+++ ...+.. ++..+. +.......+ +... ....
T Consensus 156 ~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~-~l~~~~-~~~~~r~~~---l~~~~~~~~~~~~~~~~~~~ 228 (715)
T 2va8_A 156 YLNDPERGPVVESVTIRAK-RRNLLALSATISN-YKQIAK-WLGAEP-VATNWRPVP---LIEGVIYPERKKKEYNVIFK 228 (715)
T ss_dssp GGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHH-HHTCEE-EECCCCSSC---EEEEEEEECSSTTEEEEEET
T ss_pred hcCCcccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHH-HhCCCc-cCCCCCCCC---ceEEEEecCCcccceeeecC
Confidence 9887788988988888776 7899999999975 344444 444321 111111111 1111 1111
Q ss_pred Chh----hHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCC-------------------------
Q 010709 348 SEN----EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEG------------------------- 398 (503)
Q Consensus 348 ~~~----~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~------------------------- 398 (503)
... .........+.+.. .+.+++||||+++++++.+++.|....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 301 (715)
T 2va8_A 229 DNTTKKVHGDDAIIAYTLDSL-------SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGS 301 (715)
T ss_dssp TSCEEEEESSSHHHHHHHHHH-------TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCH
T ss_pred cchhhhcccchHHHHHHHHHH-------hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccc
Confidence 100 00011222222221 234679999999999999999998642
Q ss_pred -----------CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEE----cc-------CCCChh
Q 010709 399 -----------LHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN----LD-------LPKVLL 456 (503)
Q Consensus 399 -----------~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~----~~-------~p~s~~ 456 (503)
..+..+||++++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..
T Consensus 302 ~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~ 381 (715)
T 2va8_A 302 DEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIM 381 (715)
T ss_dssp HHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHH
T ss_pred cccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHH
Confidence 24899999999999999999999999999999999999999999999999 99 899999
Q ss_pred HHHHhhCcceee
Q 010709 457 AASESLCTTSFN 468 (503)
Q Consensus 457 ~~~Qr~GR~gR~ 468 (503)
+|.||+|||||.
T Consensus 382 ~~~Qr~GRaGR~ 393 (715)
T 2va8_A 382 EYKQMSGRAGRP 393 (715)
T ss_dssp HHHHHHTTBCCT
T ss_pred HHHHHhhhcCCC
Confidence 999999999994
No 20
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-46 Score=408.85 Aligned_cols=321 Identities=18% Similarity=0.156 Sum_probs=252.5
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEE
Q 010709 121 ESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (503)
Q Consensus 121 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil 200 (503)
..|..+++++.+...+...++..|+++|.++++.+..|++++++||||+|||++|++|++..+.. ++++||+
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~--------g~rvlvl 233 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN--------KQRVIYT 233 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT--------TCEEEEE
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc--------CCeEEEE
Confidence 35667777777777776677778999999999999999999999999999999999999987643 6789999
Q ss_pred cccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhH
Q 010709 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 280 (503)
Q Consensus 201 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~ 280 (503)
+|+++|+.|+++.+++++. .+++++|+.. ...+++|+|+||++|.+++.+....+.++++|||||||+
T Consensus 234 ~PtraLa~Q~~~~l~~~~~-----~VglltGd~~-------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~ 301 (1108)
T 3l9o_A 234 SPIKALSNQKYRELLAEFG-----DVGLMTGDIT-------INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHY 301 (1108)
T ss_dssp ESSHHHHHHHHHHHHHHTS-----SEEEECSSCB-------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGG
T ss_pred cCcHHHHHHHHHHHHHHhC-----CccEEeCccc-------cCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhh
Confidence 9999999999999999873 4677888765 345689999999999999998777788999999999999
Q ss_pred HhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHH--HHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcC---------h
Q 010709 281 MLDMGFEPQIREVMQNLPDKHQTLLFSATMPVE--IEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVS---------E 349 (503)
Q Consensus 281 l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 349 (503)
+.+++|+..+..++..+++..|+|+||||+++. +..++..+...+..+....... ..+..++.... .
T Consensus 302 l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp--~pl~~~~~~~~~~~~~~~vd~ 379 (1108)
T 3l9o_A 302 MRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP--TPLQHYLFPAHGDGIYLVVDE 379 (1108)
T ss_dssp TTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCS--SCEEEEEEETTSSCCEEEEET
T ss_pred ccccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc--ccceEEEeecCCcceeeeecc
Confidence 999889999999999999999999999999764 4466677777766654432221 11122211100 0
Q ss_pred hh----------------------------------------H---HHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhh
Q 010709 350 NE----------------------------------------K---VDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTR 386 (503)
Q Consensus 350 ~~----------------------------------------k---~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~ 386 (503)
.. + ...+..++..... ...+++||||+++..
T Consensus 380 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~------~~~~~vIVF~~sr~~ 453 (1108)
T 3l9o_A 380 KSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK------KKYNPVIVFSFSKRD 453 (1108)
T ss_dssp TTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHH------TTCCCEEEEESCHHH
T ss_pred ccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHh------cCCCCEEEEeCcHHH
Confidence 00 0 1112222211111 234579999999999
Q ss_pred HHHHHHHHHHCCCe---------------------------------------EEEEcCCCCHHHHHHHHHHHhcCCCcE
Q 010709 387 CDEVSEALVAEGLH---------------------------------------AVALHGGRNQSDRESALRDFRNGSTNI 427 (503)
Q Consensus 387 ~~~l~~~L~~~~~~---------------------------------------v~~lh~~~~~~~r~~~~~~f~~g~~~v 427 (503)
|+.++..|...++. +..+||+|++.+|..+++.|++|.++|
T Consensus 454 ~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikV 533 (1108)
T 3l9o_A 454 CEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKV 533 (1108)
T ss_dssp HHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCE
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeE
Confidence 99999988543222 789999999999999999999999999
Q ss_pred EEEccccccCCCCCCCCEEEEccCC--------CChhHHHHhhCcceeee
Q 010709 428 LVATDVASRGLDVMGVAHVVNLDLP--------KVLLAASESLCTTSFNI 469 (503)
Q Consensus 428 LvaT~~~~~Gldip~v~~VI~~~~p--------~s~~~~~Qr~GR~gR~~ 469 (503)
||||+++++|||+|++++||+++.| -+..+|+||+|||||.-
T Consensus 534 LVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G 583 (1108)
T 3l9o_A 534 LFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRG 583 (1108)
T ss_dssp EEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSS
T ss_pred EEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCC
Confidence 9999999999999999999987764 36778999999999953
No 21
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=8e-46 Score=397.57 Aligned_cols=318 Identities=18% Similarity=0.241 Sum_probs=254.1
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEE
Q 010709 122 SFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPV-ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (503)
Q Consensus 122 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil 200 (503)
+|+++++++.+.+.+...|+..|+++|.++++. +.+++++++++|||+|||++|.+|++..+... +++++|+
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~~l~i 74 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-------GGKAVYI 74 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-------CSEEEEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-------CCEEEEE
Confidence 488999999999999999999999999999998 78999999999999999999999999887643 5789999
Q ss_pred cccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhH
Q 010709 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 280 (503)
Q Consensus 201 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~ 280 (503)
+|+++|+.|+++.++.+... ++.+..++|+...... ...+++|+|+||+++..++.+....+.++++|||||||+
T Consensus 75 ~P~raLa~q~~~~~~~l~~~--g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~ 149 (720)
T 2zj8_A 75 VPLKALAEEKFQEFQDWEKI--GLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHL 149 (720)
T ss_dssp CSSGGGHHHHHHHTGGGGGG--TCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGG
T ss_pred cCcHHHHHHHHHHHHHHHhc--CCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcc
Confidence 99999999999999766543 5788888887654332 124689999999999998888666688999999999999
Q ss_pred HhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEE------EcC-----h
Q 010709 281 MLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILE------KVS-----E 349 (503)
Q Consensus 281 l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-----~ 349 (503)
+.+.++...+..++..++++.|+|+||||+++ ...+ ..++..+. +...... ..+...+. ... .
T Consensus 150 l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~-~~~l~~~~-~~~~~rp---~~l~~~~~~~~~~~~~~~~~~~~ 223 (720)
T 2zj8_A 150 IGSRDRGATLEVILAHMLGKAQIIGLSATIGN-PEEL-AEWLNAEL-IVSDWRP---VKLRRGVFYQGFVTWEDGSIDRF 223 (720)
T ss_dssp GGCTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHH-HHHTTEEE-EECCCCS---SEEEEEEEETTEEEETTSCEEEC
T ss_pred cCCCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHH-HHHhCCcc-cCCCCCC---CcceEEEEeCCeeeccccchhhh
Confidence 98888999999999888778999999999975 3333 34554221 1111111 11111111 111 1
Q ss_pred hhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHC------------------C-------------
Q 010709 350 NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE------------------G------------- 398 (503)
Q Consensus 350 ~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~------------------~------------- 398 (503)
..+...+...+ .+.+++||||++++.|+.+++.|.+. +
T Consensus 224 ~~~~~~~~~~~-----------~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~ 292 (720)
T 2zj8_A 224 SSWEELVYDAI-----------RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKA 292 (720)
T ss_dssp SSTTHHHHHHH-----------HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHH
T ss_pred hHHHHHHHHHH-----------hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHH
Confidence 12222222222 12357999999999999999998753 1
Q ss_pred --CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEE----cc----CCCChhHHHHhhCcceee
Q 010709 399 --LHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN----LD----LPKVLLAASESLCTTSFN 468 (503)
Q Consensus 399 --~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~----~~----~p~s~~~~~Qr~GR~gR~ 468 (503)
..+..+||++++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|.||+|||||.
T Consensus 293 ~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~ 372 (720)
T 2zj8_A 293 IRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRP 372 (720)
T ss_dssp HTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCT
T ss_pred HhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCC
Confidence 24899999999999999999999999999999999999999999999999 66 589999999999999993
No 22
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=4.4e-45 Score=382.20 Aligned_cols=319 Identities=19% Similarity=0.232 Sum_probs=189.4
Q ss_pred CCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhc
Q 010709 140 EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (503)
Q Consensus 140 ~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~ 219 (503)
+...|+++|.++++.++.|+++++++|||+|||++|++|++..+...+ ...++++||++|+++|+.|+.+.+++++.
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 80 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHFE 80 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc---ccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 446899999999999999999999999999999999999998876642 12367899999999999999999999987
Q ss_pred cCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCC-CCCCccEEEecchhHHhhCCCHHHH-HHHHHh-
Q 010709 220 SLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT-SLSRVSFVILDEADRMLDMGFEPQI-REVMQN- 296 (503)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~-~l~~~~~vViDEaH~l~~~~~~~~~-~~il~~- 296 (503)
.. ++.+..++|+.........+..+++|+|+||++|.+.+....+ .+.++++|||||||++.+++....+ ...+..
T Consensus 81 ~~-~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~ 159 (556)
T 4a2p_A 81 RQ-GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 159 (556)
T ss_dssp GG-TCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHH
T ss_pred cc-CceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhh
Confidence 65 5888999998877666666666799999999999999988766 7899999999999999877643333 222222
Q ss_pred ---CCCCCcEEEEEeeCCH-----------HHHHHHHH------------------hcCCCeEEEeCCCCCCCCceE---
Q 010709 297 ---LPDKHQTLLFSATMPV-----------EIEALAQE------------------YLTDPVQVKVGKVSSPTANVI--- 341 (503)
Q Consensus 297 ---~~~~~q~i~~SAT~~~-----------~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~--- 341 (503)
..+..++++||||++. .+..+... +...|................
T Consensus 160 ~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (556)
T 4a2p_A 160 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 239 (556)
T ss_dssp HCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHH
T ss_pred hcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHH
Confidence 1456889999999943 12112121 112222111100000000000
Q ss_pred ---------------------EEEE----------Ec-------------------------------------------
Q 010709 342 ---------------------QILE----------KV------------------------------------------- 347 (503)
Q Consensus 342 ---------------------~~~~----------~~------------------------------------------- 347 (503)
.... .+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 319 (556)
T 4a2p_A 240 SNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 319 (556)
T ss_dssp HHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0000 00
Q ss_pred -------------------------------------------------ChhhHHHHHHHHHHHHHHhhhccCCCCCcEE
Q 010709 348 -------------------------------------------------SENEKVDRLLALLVEEAFLAEKSCHPFPLTI 378 (503)
Q Consensus 348 -------------------------------------------------~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~l 378 (503)
....|...+..++.+.... .+..++|
T Consensus 320 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~-----~~~~k~l 394 (556)
T 4a2p_A 320 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRY-----NPQTRTL 394 (556)
T ss_dssp HSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHH-----CTTCCEE
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcC-----CCCceEE
Confidence 0011222233333222111 3457899
Q ss_pred EEEcchhhHHHHHHHHHHC------------CCeEEEEcCCCCHHHHHHHHHHHhc-CCCcEEEEccccccCCCCCCCCE
Q 010709 379 VFVERKTRCDEVSEALVAE------------GLHAVALHGGRNQSDRESALRDFRN-GSTNILVATDVASRGLDVMGVAH 445 (503)
Q Consensus 379 IF~~~~~~~~~l~~~L~~~------------~~~v~~lh~~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~Gldip~v~~ 445 (503)
|||+++..++.+++.|... |.....+||++++.+|.++++.|++ |+.+|||||+++++|||+|+|++
T Consensus 395 VF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~ 474 (556)
T 4a2p_A 395 LFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNL 474 (556)
T ss_dssp EEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CE
T ss_pred EEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCE
Confidence 9999999999999999875 5556677889999999999999999 99999999999999999999999
Q ss_pred EEEccCCCChhHHHHhhCcceee
Q 010709 446 VVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 446 VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
||+||+|+++..|+||+|| ||.
T Consensus 475 VI~~d~p~s~~~~~Qr~GR-gR~ 496 (556)
T 4a2p_A 475 VVLYEYSGNVTKMIQVRGR-GRA 496 (556)
T ss_dssp EEEETCCSCHHHHHHC-------
T ss_pred EEEeCCCCCHHHHHHhcCC-CCC
Confidence 9999999999999999999 995
No 23
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=9.9e-46 Score=396.95 Aligned_cols=325 Identities=20% Similarity=0.276 Sum_probs=206.2
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHH
Q 010709 134 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 213 (503)
Q Consensus 134 ~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~ 213 (503)
..+..+|+..|+++|.++++.++.|+++|+++|||+|||++|++|++..+...+. ..++++||++||++|+.|+.+.
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~---~~~~~~lvl~Pt~~L~~Q~~~~ 80 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ---GQKGKVVFFANQIPVYEQNKSV 80 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT---TCCCCEEEECSSHHHHHHHHHH
T ss_pred CcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc---CCCCeEEEEECCHHHHHHHHHH
Confidence 4567789999999999999999999999999999999999999999987765421 2246899999999999999999
Q ss_pred HHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCC-CCCCccEEEecchhHHhhCC-CHHHHH
Q 010709 214 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT-SLSRVSFVILDEADRMLDMG-FEPQIR 291 (503)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~-~l~~~~~vViDEaH~l~~~~-~~~~~~ 291 (503)
+++++... ++.+..++|+.........+..+++|+|+||++|.+.+....+ .+.++++|||||||++.+.. +...+.
T Consensus 81 ~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~ 159 (696)
T 2ykg_A 81 FSKYFERH-GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMF 159 (696)
T ss_dssp HHHHTTTT-TCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHH
T ss_pred HHHHhccC-CceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHH
Confidence 99998654 5888999998865555555556799999999999999988766 68899999999999987654 222222
Q ss_pred HHHHh-----CCCCCcEEEEEeeCC-------HH-HHHHH---------------------HHhcCCCeEEEeCCCCCCC
Q 010709 292 EVMQN-----LPDKHQTLLFSATMP-------VE-IEALA---------------------QEYLTDPVQVKVGKVSSPT 337 (503)
Q Consensus 292 ~il~~-----~~~~~q~i~~SAT~~-------~~-~~~~~---------------------~~~~~~~~~~~~~~~~~~~ 337 (503)
..+.. .++..++++||||+. .+ +..+. ..+...|............
T Consensus 160 ~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~ 239 (696)
T 2ykg_A 160 NYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRIS 239 (696)
T ss_dssp HHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSC
T ss_pred HHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccC
Confidence 22222 246789999999996 11 12111 1122223221110000000
Q ss_pred Cc---------------------------------------------------eEEEEEEc-------------------
Q 010709 338 AN---------------------------------------------------VIQILEKV------------------- 347 (503)
Q Consensus 338 ~~---------------------------------------------------~~~~~~~~------------------- 347 (503)
.. ..+.....
T Consensus 240 ~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 319 (696)
T 2ykg_A 240 DKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKY 319 (696)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHH
Confidence 00 00000000
Q ss_pred ---------------------------------------------------------ChhhHHHHHHHHHHHHHHhhhcc
Q 010709 348 ---------------------------------------------------------SENEKVDRLLALLVEEAFLAEKS 370 (503)
Q Consensus 348 ---------------------------------------------------------~~~~k~~~l~~~l~~~~~~~~~~ 370 (503)
....|...+..++.... .
T Consensus 320 ~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~-----~ 394 (696)
T 2ykg_A 320 NDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEY-----H 394 (696)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHH-----T
T ss_pred hHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh-----c
Confidence 01223333333333221 1
Q ss_pred CCCCCcEEEEEcchhhHHHHHHHHHHCC----CeEEEE--------cCCCCHHHHHHHHHHHhc-CCCcEEEEccccccC
Q 010709 371 CHPFPLTIVFVERKTRCDEVSEALVAEG----LHAVAL--------HGGRNQSDRESALRDFRN-GSTNILVATDVASRG 437 (503)
Q Consensus 371 ~~~~~~~lIF~~~~~~~~~l~~~L~~~~----~~v~~l--------h~~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~G 437 (503)
..+.+++||||+++..++.+++.|...+ +.+..+ ||+|++.+|.++++.|++ |+.+|||||+++++|
T Consensus 395 ~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~G 474 (696)
T 2ykg_A 395 LNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEG 474 (696)
T ss_dssp TCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC
T ss_pred cCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcC
Confidence 1345689999999999999999999988 888888 559999999999999998 999999999999999
Q ss_pred CCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 438 LDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 438 ldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
||+|++++||+||+|.+..+|+||+|| ||.
T Consensus 475 iDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~ 504 (696)
T 2ykg_A 475 IDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 504 (696)
T ss_dssp ---CCCSEEEEESCC--CCCC----------
T ss_pred CcCccCCEEEEeCCCCCHHHHHHhhcc-CcC
Confidence 999999999999999999999999999 994
No 24
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=7.8e-46 Score=396.57 Aligned_cols=317 Identities=17% Similarity=0.202 Sum_probs=247.6
Q ss_pred CcccCC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEE
Q 010709 122 SFTDMC--LHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (503)
Q Consensus 122 ~~~~~~--l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~li 199 (503)
+|++++ +++.+.+.++..||..|+++|.++++.+.+++++++++|||+|||++|.+|++..+.. +++++|
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~l~ 73 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK--------GGKSLY 73 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT--------TCCEEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh--------CCcEEE
Confidence 477888 9999999999999999999999999999999999999999999999999999987653 467999
Q ss_pred EcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchh
Q 010709 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD 279 (503)
Q Consensus 200 l~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH 279 (503)
++|+++|+.|+++.++.+.. . ++++..++|+....+. ...+++|+|+||+++..++.+....+.++++|||||||
T Consensus 74 i~P~r~La~q~~~~~~~~~~-~-g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H 148 (702)
T 2p6r_A 74 VVPLRALAGEKYESFKKWEK-I-GLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIH 148 (702)
T ss_dssp EESSHHHHHHHHHHHTTTTT-T-TCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGG
T ss_pred EeCcHHHHHHHHHHHHHHHh-c-CCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeee
Confidence 99999999999999965543 2 5788888887754332 12468999999999999988866668899999999999
Q ss_pred HHhhCCCHHHHHHHHHhC---CCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEE------EcChh
Q 010709 280 RMLDMGFEPQIREVMQNL---PDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILE------KVSEN 350 (503)
Q Consensus 280 ~l~~~~~~~~~~~il~~~---~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 350 (503)
++.++++...+..++..+ +++.|+|+||||+++ ...+. .++..+. +....... .+...+. .....
T Consensus 149 ~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~-~~l~~~~-~~~~~r~~---~l~~~~~~~~~~~~~~~~ 222 (702)
T 2p6r_A 149 LLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIA-EWLDADY-YVSDWRPV---PLVEGVLCEGTLELFDGA 222 (702)
T ss_dssp GGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHH-HHTTCEE-EECCCCSS---CEEEEEECSSEEEEEETT
T ss_pred ecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHH-HHhCCCc-ccCCCCCc---cceEEEeeCCeeeccCcc
Confidence 998888888888776655 578999999999975 44444 4554332 22111111 1111110 00100
Q ss_pred -------hHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHC--------------------------
Q 010709 351 -------EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-------------------------- 397 (503)
Q Consensus 351 -------~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~-------------------------- 397 (503)
.+...+...+ .+.+++||||+++++++.+++.|...
T Consensus 223 ~~~~~~~~~~~~~~~~~-----------~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 291 (702)
T 2p6r_A 223 FSTSRRVKFEELVEECV-----------AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKL 291 (702)
T ss_dssp EEEEEECCHHHHHHHHH-----------HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHH
T ss_pred hhhhhhhhHHHHHHHHH-----------hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHH
Confidence 0222222222 13467999999999999999988753
Q ss_pred ----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEE----cc---CCCChhHHHHhhCcce
Q 010709 398 ----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN----LD---LPKVLLAASESLCTTS 466 (503)
Q Consensus 398 ----~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~----~~---~p~s~~~~~Qr~GR~g 466 (503)
+..+..+||++++++|..+++.|++|+++|||||+++++|||+|++++||+ || .|.+..+|.||+||||
T Consensus 292 ~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaG 371 (702)
T 2p6r_A 292 AECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAG 371 (702)
T ss_dssp HHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBS
T ss_pred HHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcC
Confidence 135788999999999999999999999999999999999999999999999 66 7899999999999999
Q ss_pred ee
Q 010709 467 FN 468 (503)
Q Consensus 467 R~ 468 (503)
|.
T Consensus 372 R~ 373 (702)
T 2p6r_A 372 RP 373 (702)
T ss_dssp CT
T ss_pred CC
Confidence 94
No 25
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=4.1e-44 Score=374.75 Aligned_cols=316 Identities=22% Similarity=0.244 Sum_probs=213.1
Q ss_pred CCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccC
Q 010709 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (503)
Q Consensus 142 ~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~ 221 (503)
-.|+++|.++++.++.|+++++++|||+|||++|++|++..+...+. ..++++||++|+++|+.|+.+.+++++...
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~---~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC---GQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS---SCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc---CCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 37999999999999999999999999999999999999988776431 236789999999999999999999998765
Q ss_pred CCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCC-CCCCccEEEecchhHHhhCCC-HHHHHHHHHhC--
Q 010709 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT-SLSRVSFVILDEADRMLDMGF-EPQIREVMQNL-- 297 (503)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~-~l~~~~~vViDEaH~l~~~~~-~~~~~~il~~~-- 297 (503)
++.+..++|+.........+..+++|+|+||++|.+.+..... .+.++++|||||||++.+.+. ...+...+...
T Consensus 80 -~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 158 (555)
T 3tbk_A 80 -GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLG 158 (555)
T ss_dssp -TCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTS
T ss_pred -CcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhc
Confidence 5889999999876665555666799999999999999988766 788999999999999987652 22232333321
Q ss_pred ---CCCCcEEEEEeeCCHH-----------HHHHHHHhcCCCeEEEeCCC------CCCCCceEEEEEEc----------
Q 010709 298 ---PDKHQTLLFSATMPVE-----------IEALAQEYLTDPVQVKVGKV------SSPTANVIQILEKV---------- 347 (503)
Q Consensus 298 ---~~~~q~i~~SAT~~~~-----------~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~---------- 347 (503)
.+..|++++|||++.. +..+. ..+........... ..............
T Consensus 159 ~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
T 3tbk_A 159 ESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLC-AALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCII 237 (555)
T ss_dssp SCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHH-HHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHH
T ss_pred cccCCCCeEEEEecCcccCccccHHHHHHHHHHHH-HhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHH
Confidence 2567899999999542 11111 12221111111000 00000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 010709 348 -------------------------------------------------------------------------------- 347 (503)
Q Consensus 348 -------------------------------------------------------------------------------- 347 (503)
T Consensus 238 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 317 (555)
T 3tbk_A 238 SQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIIS 317 (555)
T ss_dssp HHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence
Q ss_pred --------------------------------------------------ChhhHHHHHHHHHHHHHHhhhccCCCCCcE
Q 010709 348 --------------------------------------------------SENEKVDRLLALLVEEAFLAEKSCHPFPLT 377 (503)
Q Consensus 348 --------------------------------------------------~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~ 377 (503)
....|...+..++...... .+.+++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~-----~~~~k~ 392 (555)
T 3tbk_A 318 EDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHL-----KPETKT 392 (555)
T ss_dssp HHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHH-----CTTCCE
T ss_pred hhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhcc-----CCCceE
Confidence 0012233333333322111 345789
Q ss_pred EEEEcchhhHHHHHHHHHHCC------------CeEEEEcCCCCHHHHHHHHHHHhc-CCCcEEEEccccccCCCCCCCC
Q 010709 378 IVFVERKTRCDEVSEALVAEG------------LHAVALHGGRNQSDRESALRDFRN-GSTNILVATDVASRGLDVMGVA 444 (503)
Q Consensus 378 lIF~~~~~~~~~l~~~L~~~~------------~~v~~lh~~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~Gldip~v~ 444 (503)
||||+++..++.+++.|...+ .....+||+|++.+|.++++.|++ |+.+|||||+++++|||+|+++
T Consensus 393 lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~ 472 (555)
T 3tbk_A 393 ILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECN 472 (555)
T ss_dssp EEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCS
T ss_pred EEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCC
Confidence 999999999999999999864 344556679999999999999999 9999999999999999999999
Q ss_pred EEEEccCCCChhHHHHhhCcceee
Q 010709 445 HVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 445 ~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
+||+||+|+++..|+||+|| ||.
T Consensus 473 ~VI~~d~p~s~~~~~Qr~GR-gR~ 495 (555)
T 3tbk_A 473 LVILYEYVGNVIKMIQTRGR-GRA 495 (555)
T ss_dssp EEEEESCCSSCCCEECSSCC-CTT
T ss_pred EEEEeCCCCCHHHHHHhcCc-CcC
Confidence 99999999999999999999 884
No 26
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=5.8e-44 Score=386.78 Aligned_cols=321 Identities=19% Similarity=0.238 Sum_probs=196.3
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHH
Q 010709 138 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (503)
Q Consensus 138 ~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 217 (503)
.+|+..|+++|.++++.++.|+++++++|||+|||++|++|++..+...+ ...++++||++|+++|+.|+.+.++++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~---~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~ 319 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHH 319 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 45788999999999999999999999999999999999999998877642 123678999999999999999999999
Q ss_pred hccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCC-CCCCccEEEecchhHHhhCCCHHHH-HHHHH
Q 010709 218 SRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT-SLSRVSFVILDEADRMLDMGFEPQI-REVMQ 295 (503)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~-~l~~~~~vViDEaH~l~~~~~~~~~-~~il~ 295 (503)
+... ++.+..++|+.........+..+++|+|+||++|.+.+....+ .+.++++|||||||++.+.+....+ ...+.
T Consensus 320 ~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~ 398 (797)
T 4a2q_A 320 FERQ-GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (797)
T ss_dssp HGGG-TCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHH
T ss_pred cccC-CceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHH
Confidence 8765 5889999999877766666777899999999999999988766 7889999999999998876433222 23322
Q ss_pred h----CCCCCcEEEEEeeCCH-----------HHHHHHH------------------HhcCCCeEEEeCCCCCCCCc---
Q 010709 296 N----LPDKHQTLLFSATMPV-----------EIEALAQ------------------EYLTDPVQVKVGKVSSPTAN--- 339 (503)
Q Consensus 296 ~----~~~~~q~i~~SAT~~~-----------~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~--- 339 (503)
. ..+..++++||||+.. .+..+.. .++..|..............
T Consensus 399 ~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 478 (797)
T 4a2q_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 478 (797)
T ss_dssp HHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHH
T ss_pred HhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHH
Confidence 2 2556889999999952 2222221 12222221111000000000
Q ss_pred ---------------------eEEEEEE----------c------------C----------------------------
Q 010709 340 ---------------------VIQILEK----------V------------S---------------------------- 348 (503)
Q Consensus 340 ---------------------~~~~~~~----------~------------~---------------------------- 348 (503)
+...... + .
T Consensus 479 ~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 558 (797)
T 4a2q_A 479 IISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALII 558 (797)
T ss_dssp HHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 0000000 0 0
Q ss_pred ----------------------------------------------------hhhHHHHHHHHHHHHHHhhhccCCCCCc
Q 010709 349 ----------------------------------------------------ENEKVDRLLALLVEEAFLAEKSCHPFPL 376 (503)
Q Consensus 349 ----------------------------------------------------~~~k~~~l~~~l~~~~~~~~~~~~~~~~ 376 (503)
...|...+..++..... ..+..+
T Consensus 559 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~-----~~~~~k 633 (797)
T 4a2q_A 559 SEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYR-----YNPQTR 633 (797)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHH-----HCSSCC
T ss_pred hccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhc-----cCCCCe
Confidence 01122222222222111 134578
Q ss_pred EEEEEcchhhHHHHHHHHHHC------------CCeEEEEcCCCCHHHHHHHHHHHhc-CCCcEEEEccccccCCCCCCC
Q 010709 377 TIVFVERKTRCDEVSEALVAE------------GLHAVALHGGRNQSDRESALRDFRN-GSTNILVATDVASRGLDVMGV 443 (503)
Q Consensus 377 ~lIF~~~~~~~~~l~~~L~~~------------~~~v~~lh~~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~Gldip~v 443 (503)
+||||+++..++.+++.|... |..+..+||++++.+|.++++.|++ |+.+|||||+++++|||+|+|
T Consensus 634 vLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v 713 (797)
T 4a2q_A 634 TLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQC 713 (797)
T ss_dssp EEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCC
T ss_pred EEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhC
Confidence 999999999999999999873 5566778999999999999999999 999999999999999999999
Q ss_pred CEEEEccCCCChhHHHHhhCcceee
Q 010709 444 AHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 444 ~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
++||+||+|+++..|+||+|| ||.
T Consensus 714 ~~VI~yd~p~s~~~~iQr~GR-GR~ 737 (797)
T 4a2q_A 714 NLVVLYEYSGNVTKMIQVRGR-GRA 737 (797)
T ss_dssp SEEEEESCCSCHHHHHTC-------
T ss_pred CEEEEeCCCCCHHHHHHhcCC-CCC
Confidence 999999999999999999999 995
No 27
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-43 Score=381.99 Aligned_cols=299 Identities=20% Similarity=0.219 Sum_probs=239.0
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHH
Q 010709 138 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (503)
Q Consensus 138 ~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 217 (503)
.++|. |+++|.++++.+..|+++++++|||+|||++|.++++..+.. ++++||++|+++|+.|+++.++++
T Consensus 82 ~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~--------g~rvL~l~PtkaLa~Q~~~~l~~~ 152 (1010)
T 2xgj_A 82 TYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN--------KQRVIYTSPIKALSNQKYRELLAE 152 (1010)
T ss_dssp CCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT--------TCEEEEEESSHHHHHHHHHHHHHH
T ss_pred hCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc--------CCeEEEECChHHHHHHHHHHHHHH
Confidence 34564 999999999999999999999999999999999888876532 578999999999999999999998
Q ss_pred hccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhC
Q 010709 218 SRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL 297 (503)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~ 297 (503)
+. .+++++|+... ...++|+|+||++|.+++.+....+.++++|||||||++.+++++..+..++..+
T Consensus 153 ~~-----~vglltGd~~~-------~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l 220 (1010)
T 2xgj_A 153 FG-----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILL 220 (1010)
T ss_dssp HS-----CEEEECSSCEE-------CTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHS
T ss_pred hC-----CEEEEeCCCcc-------CCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhc
Confidence 73 56778887653 2358999999999999998877788999999999999999999999999999999
Q ss_pred CCCCcEEEEEeeCCHHHH--HHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcC---------h-----------------
Q 010709 298 PDKHQTLLFSATMPVEIE--ALAQEYLTDPVQVKVGKVSSPTANVIQILEKVS---------E----------------- 349 (503)
Q Consensus 298 ~~~~q~i~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~----------------- 349 (503)
++..|+|+||||+++..+ ..+......+..+....... ..+.+++.... .
T Consensus 221 ~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp--~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 298 (1010)
T 2xgj_A 221 PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP--TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASIS 298 (1010)
T ss_dssp CTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCS--SCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc--ccceEEEEecCCcceeeeeccccccchHHHHHHHHHHh
Confidence 999999999999986532 33444445565554332111 12222222110 0
Q ss_pred -----------------------------hhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCC-
Q 010709 350 -----------------------------NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGL- 399 (503)
Q Consensus 350 -----------------------------~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~- 399 (503)
......++..+.. ....++||||+++..|+.+++.|...++
T Consensus 299 ~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~---------~~~~~~IVF~~sr~~~e~la~~L~~~~~~ 369 (1010)
T 2xgj_A 299 NQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK---------KKYNPVIVFSFSKRDCEELALKMSKLDFN 369 (1010)
T ss_dssp ------------------------------CHHHHHHHHHHH---------HTCCSEEEEESSHHHHHHHHHTTTTSCCC
T ss_pred hhhcccccccccccccccccccccccccchHHHHHHHHHHHh---------cCCCCEEEEECCHHHHHHHHHHHHhCCCC
Confidence 0011112221111 1234799999999999999999876443
Q ss_pred --------------------------------------eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCC
Q 010709 400 --------------------------------------HAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVM 441 (503)
Q Consensus 400 --------------------------------------~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip 441 (503)
.+..+||++++.+|..+++.|++|.++|||||+++++|||+|
T Consensus 370 ~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP 449 (1010)
T 2xgj_A 370 SDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMP 449 (1010)
T ss_dssp CHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCC
T ss_pred ChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCC
Confidence 278999999999999999999999999999999999999999
Q ss_pred CCCEEEE----ccC----CCChhHHHHhhCcceee
Q 010709 442 GVAHVVN----LDL----PKVLLAASESLCTTSFN 468 (503)
Q Consensus 442 ~v~~VI~----~~~----p~s~~~~~Qr~GR~gR~ 468 (503)
++++||+ ||. |.+..+|+||+|||||.
T Consensus 450 ~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~ 484 (1010)
T 2xgj_A 450 AKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRR 484 (1010)
T ss_dssp BSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCT
T ss_pred CceEEEeCCcccCCcCCccCCHHHHhHhhhhcccC
Confidence 9999999 998 88999999999999995
No 28
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=9.3e-44 Score=391.53 Aligned_cols=280 Identities=20% Similarity=0.249 Sum_probs=227.8
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHH
Q 010709 138 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (503)
Q Consensus 138 ~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 217 (503)
..|| .|+++|.++++.+++|+|++++||||+|||++|+++++..+ . .++++||++||++||.|+++.++++
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~-~-------~~~~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA-R-------KGKKSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH-T-------TTCCEEEEESSHHHHHHHHHHHHTT
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH-h-------cCCeEEEEechHHHHHHHHHHHHHh
Confidence 3677 69999999999999999999999999999998877766654 2 2678999999999999999999997
Q ss_pred hccCCCceEEEEECCccH---HHHHHHhhCC-CcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHh----------h
Q 010709 218 SRSLDSFKTAIVVGGTNI---AEQRSELRGG-VSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRML----------D 283 (503)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~----------~ 283 (503)
+ . .++.+..++|+... ..+...+..+ ++|+|+||++|.+++.. +.+.++++|||||||++. +
T Consensus 145 ~-~-~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~ 220 (1104)
T 4ddu_A 145 A-D-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLM 220 (1104)
T ss_dssp S-C-TTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHH
T ss_pred h-C-CCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhH
Confidence 6 3 36899999999987 5566666665 99999999999888774 667889999999997654 4
Q ss_pred -CCCHHH-HHHHHHhCC-----------CCCcEEEEEee-CCHHHH-HHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcC
Q 010709 284 -MGFEPQ-IREVMQNLP-----------DKHQTLLFSAT-MPVEIE-ALAQEYLTDPVQVKVGKVSSPTANVIQILEKVS 348 (503)
Q Consensus 284 -~~~~~~-~~~il~~~~-----------~~~q~i~~SAT-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (503)
++|... +..++..++ ++.|+++|||| .|..+. .+...++. +.+........++.+.+..+.
T Consensus 221 ~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~~ 296 (1104)
T 4ddu_A 221 MVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISSR 296 (1104)
T ss_dssp TSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESCC
T ss_pred hcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEecC
Confidence 788877 888888776 78999999999 555544 23333333 233334445566777776663
Q ss_pred hhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEE-EEcCCCCHHHHHHHHHHHhcCCCcE
Q 010709 349 ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAV-ALHGGRNQSDRESALRDFRNGSTNI 427 (503)
Q Consensus 349 ~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~-~lh~~~~~~~r~~~~~~f~~g~~~v 427 (503)
+...+..++... .+++||||++++.++.+++.|...|+.+. .+|| +|.+ ++.|++|+.+|
T Consensus 297 ---k~~~L~~ll~~~----------~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~V 357 (1104)
T 4ddu_A 297 ---SKEKLVELLEIF----------RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINI 357 (1104)
T ss_dssp ---CHHHHHHHHHHH----------CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSE
T ss_pred ---HHHHHHHHHHhc----------CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCE
Confidence 444455555441 14699999999999999999999999998 9999 2555 99999999999
Q ss_pred EEE----ccccccCCCCCC-CCEEEEccCCC
Q 010709 428 LVA----TDVASRGLDVMG-VAHVVNLDLPK 453 (503)
Q Consensus 428 Lva----T~~~~~Gldip~-v~~VI~~~~p~ 453 (503)
||| |+++++|||+|+ |++||+||+|+
T Consensus 358 LVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 358 LIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp EEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred EEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 999 999999999999 99999999999
No 29
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.8e-42 Score=353.06 Aligned_cols=311 Identities=22% Similarity=0.251 Sum_probs=233.8
Q ss_pred CCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCC
Q 010709 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (503)
Q Consensus 143 ~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~ 222 (503)
.|+++|.++++.++.+ ++++++|||+|||++++++++..+.. .++++||++|+++|+.||.++++++... .
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~-------~~~~~liv~P~~~L~~q~~~~~~~~~~~-~ 79 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK-------YGGKVLMLAPTKPLVLQHAESFRRLFNL-P 79 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH-------SCSCEEEECSSHHHHHHHHHHHHHHBCS-C
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc-------CCCeEEEEECCHHHHHHHHHHHHHHhCc-c
Confidence 6999999999999998 99999999999999999988877652 2577999999999999999999998732 2
Q ss_pred CceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCc
Q 010709 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQ 302 (503)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q 302 (503)
...+..+.|+....+.. ....+++|+|+||+.|...+....+.+.++++||+||||++.+......+...+....+..+
T Consensus 80 ~~~v~~~~g~~~~~~~~-~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~ 158 (494)
T 1wp9_A 80 PEKIVALTGEKSPEERS-KAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPL 158 (494)
T ss_dssp GGGEEEECSCSCHHHHH-HHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCC
T ss_pred hhheEEeeCCcchhhhh-hhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCe
Confidence 35788888887765433 33346899999999999999887778899999999999998766555555556655567788
Q ss_pred EEEEEeeCCHH---HHHHHHHhcCCCeEEEeCCCCC-----CCCceEEEEEEcC--------------------------
Q 010709 303 TLLFSATMPVE---IEALAQEYLTDPVQVKVGKVSS-----PTANVIQILEKVS-------------------------- 348 (503)
Q Consensus 303 ~i~~SAT~~~~---~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-------------------------- 348 (503)
+++||||+..+ +..+...+.............. ............+
T Consensus 159 ~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (494)
T 1wp9_A 159 VIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGL 238 (494)
T ss_dssp EEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred EEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999743 3333333322221111110000 0000111111111
Q ss_pred --------------------------------------------------------------------------------
Q 010709 349 -------------------------------------------------------------------------------- 348 (503)
Q Consensus 349 -------------------------------------------------------------------------------- 348 (503)
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 318 (494)
T 1wp9_A 239 LESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKE 318 (494)
T ss_dssp SSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred ccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhh
Confidence
Q ss_pred ----------------------hhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcC
Q 010709 349 ----------------------ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHG 406 (503)
Q Consensus 349 ----------------------~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~ 406 (503)
...|...+..++...... .+..++||||+++..++.+++.|...|+.+..+||
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~-----~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g 393 (494)
T 1wp9_A 319 IFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQR-----KQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVG 393 (494)
T ss_dssp HHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH-----CTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECC
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhcc-----CCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEec
Confidence 111222222222221110 35678999999999999999999999999999999
Q ss_pred --------CCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 407 --------GRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 407 --------~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
+++..+|.++++.|++|+.+|||||+++++|+|+|++++||++|+|+++..|.||+||+||.
T Consensus 394 ~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~ 463 (494)
T 1wp9_A 394 QASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRH 463 (494)
T ss_dssp SSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSC
T ss_pred cccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999995
No 30
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1.6e-41 Score=352.54 Aligned_cols=315 Identities=17% Similarity=0.183 Sum_probs=243.4
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHH
Q 010709 138 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (503)
Q Consensus 138 ~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 217 (503)
..|+ .|+++|..+++.+++|+ |+.++||+|||++|.+|++...+. ++.++||+||++||.|.++.+..+
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~--------g~~vlVltptreLA~qd~e~~~~l 147 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT--------GKGVHVVTVNEYLASRDAEQMGKI 147 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 4799 99999999999999998 999999999999999999865432 567999999999999999999999
Q ss_pred hccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHH-HHHHHcC------CCCCCCccEEEecchhHHh-hCC----
Q 010709 218 SRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQG------NTSLSRVSFVILDEADRML-DMG---- 285 (503)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~------~~~l~~~~~vViDEaH~l~-~~~---- 285 (503)
...+ ++++.+++||....... ...+++|+|+||++| .+++..+ .+.++.+.++||||||+|+ +.+
T Consensus 148 ~~~l-gl~v~~i~gg~~~~~r~--~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tpl 224 (844)
T 1tf5_A 148 FEFL-GLTVGLNLNSMSKDEKR--EAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPL 224 (844)
T ss_dssp HHHT-TCCEEECCTTSCHHHHH--HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEE
T ss_pred Hhhc-CCeEEEEeCCCCHHHHH--HhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccch
Confidence 9877 69999999998765433 334699999999999 5665542 3567889999999999987 654
Q ss_pred -----------CHHHHHHHHHhCC---------CCCcEE-----------------EEEeeCCHH---HHHH--HHHhcC
Q 010709 286 -----------FEPQIREVMQNLP---------DKHQTL-----------------LFSATMPVE---IEAL--AQEYLT 323 (503)
Q Consensus 286 -----------~~~~~~~il~~~~---------~~~q~i-----------------~~SAT~~~~---~~~~--~~~~~~ 323 (503)
|...+..++..++ +..|++ ++|||.+.- +... +..++.
T Consensus 225 Iisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~ 304 (844)
T 1tf5_A 225 IISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQ 304 (844)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCC
T ss_pred hhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhh
Confidence 6688899999987 367777 889997642 2222 222221
Q ss_pred -CCeEE-------EeCC---------------------------------------------------------------
Q 010709 324 -DPVQV-------KVGK--------------------------------------------------------------- 332 (503)
Q Consensus 324 -~~~~~-------~~~~--------------------------------------------------------------- 332 (503)
+...+ .++.
T Consensus 305 ~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~ 384 (844)
T 1tf5_A 305 KDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEF 384 (844)
T ss_dssp BTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHH
T ss_pred cCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHH
Confidence 11111 0000
Q ss_pred ------------CCCCCCce-EEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCC
Q 010709 333 ------------VSSPTANV-IQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGL 399 (503)
Q Consensus 333 ------------~~~~~~~~-~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~ 399 (503)
...+.... ...+.......|...+...+...... ..++||||++++.++.|++.|...|+
T Consensus 385 ~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~-------~~pvLVft~s~~~se~Ls~~L~~~gi 457 (844)
T 1tf5_A 385 RNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMT-------GQPVLVGTVAVETSELISKLLKNKGI 457 (844)
T ss_dssp HHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHH-------TCCEEEEESCHHHHHHHHHHHHTTTC
T ss_pred HHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhc-------CCcEEEEECCHHHHHHHHHHHHHCCC
Confidence 00000000 01134556778888888777653221 23699999999999999999999999
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCC--------CCCEEEEccCCCChhHHHHhhCcceee---
Q 010709 400 HAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVM--------GVAHVVNLDLPKVLLAASESLCTTSFN--- 468 (503)
Q Consensus 400 ~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip--------~v~~VI~~~~p~s~~~~~Qr~GR~gR~--- 468 (503)
.+..+||++.+.+|..+.+.|+.| .|+|||++++||+||+ ++.+||+|++|.+...|+||+||+||.
T Consensus 458 ~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~ 535 (844)
T 1tf5_A 458 PHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDP 535 (844)
T ss_dssp CCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCC
T ss_pred CEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCC
Confidence 999999999988887776666555 7999999999999999 788999999999999999999999993
Q ss_pred -----eeeccCc
Q 010709 469 -----ITTNLDG 475 (503)
Q Consensus 469 -----~~~~~~~ 475 (503)
+++..|.
T Consensus 536 G~s~~~vs~eD~ 547 (844)
T 1tf5_A 536 GITQFYLSMEDE 547 (844)
T ss_dssp EEEEEEEETTSS
T ss_pred CeEEEEecHHHH
Confidence 6666663
No 31
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=5.7e-43 Score=382.75 Aligned_cols=322 Identities=19% Similarity=0.235 Sum_probs=193.7
Q ss_pred HHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q 010709 137 EFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (503)
Q Consensus 137 ~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 216 (503)
...++..|+++|.++++.+++|+++++++|||+|||++|++|++..+...+ ...++++|||+|+++|+.|+.+.+++
T Consensus 242 ~l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~---~~~~~~vLvl~Pt~~L~~Q~~~~~~~ 318 (936)
T 4a2w_A 242 PVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKH 318 (936)
T ss_dssp ------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC---SSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999999999999887655432 12367899999999999999999999
Q ss_pred HhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCC-CCCCccEEEecchhHHhhCCCH-HHHHHHH
Q 010709 217 LSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT-SLSRVSFVILDEADRMLDMGFE-PQIREVM 294 (503)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~-~l~~~~~vViDEaH~l~~~~~~-~~~~~il 294 (503)
++... ++.+..++|+.........+..+++|+|+||++|.+.+.+..+ .+.++++|||||||++.+.+.. ..+..++
T Consensus 319 ~~~~~-~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~ 397 (936)
T 4a2w_A 319 HFERQ-GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYL 397 (936)
T ss_dssp HHHTT-TCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHH
T ss_pred Hhccc-CceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHH
Confidence 98655 5889999999876665555556789999999999999988766 6889999999999998876432 2222333
Q ss_pred Hh----CCCCCcEEEEEeeCCH-----------HHHHHHH------------------HhcCCCeEEEeCCCCCCCCc--
Q 010709 295 QN----LPDKHQTLLFSATMPV-----------EIEALAQ------------------EYLTDPVQVKVGKVSSPTAN-- 339 (503)
Q Consensus 295 ~~----~~~~~q~i~~SAT~~~-----------~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~-- 339 (503)
.. ..+..++++||||+.. .+..+.. .+...|..............
T Consensus 398 ~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~ 477 (936)
T 4a2w_A 398 EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFA 477 (936)
T ss_dssp HHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHH
T ss_pred HHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHH
Confidence 22 2456889999999952 2222111 12222222111100000000
Q ss_pred ----------------------eEEEEEE-c---------------------C---------------------------
Q 010709 340 ----------------------VIQILEK-V---------------------S--------------------------- 348 (503)
Q Consensus 340 ----------------------~~~~~~~-~---------------------~--------------------------- 348 (503)
+...... . +
T Consensus 478 ~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~ 557 (936)
T 4a2w_A 478 AIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALI 557 (936)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 0000000 0 0
Q ss_pred -----------------------------------------------------hhhHHHHHHHHHHHHHHhhhccCCCCC
Q 010709 349 -----------------------------------------------------ENEKVDRLLALLVEEAFLAEKSCHPFP 375 (503)
Q Consensus 349 -----------------------------------------------------~~~k~~~l~~~l~~~~~~~~~~~~~~~ 375 (503)
...|...+..++.+ .....+..
T Consensus 558 i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~-----~~~~~~~~ 632 (936)
T 4a2w_A 558 ISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDD-----AYRYNPQT 632 (936)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHH-----TTTSCTTC
T ss_pred hhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHH-----HhccCCCC
Confidence 00011111111111 01124567
Q ss_pred cEEEEEcchhhHHHHHHHHHHC------------CCeEEEEcCCCCHHHHHHHHHHHhc-CCCcEEEEccccccCCCCCC
Q 010709 376 LTIVFVERKTRCDEVSEALVAE------------GLHAVALHGGRNQSDRESALRDFRN-GSTNILVATDVASRGLDVMG 442 (503)
Q Consensus 376 ~~lIF~~~~~~~~~l~~~L~~~------------~~~v~~lh~~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~Gldip~ 442 (503)
++||||+++..++.+++.|... |..+..+||+|++.+|.++++.|++ |+.+|||||+++++|||+|+
T Consensus 633 rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~ 712 (936)
T 4a2w_A 633 RTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQ 712 (936)
T ss_dssp CEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCC
T ss_pred eEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchh
Confidence 8999999999999999999986 5566677999999999999999999 99999999999999999999
Q ss_pred CCEEEEccCCCChhHHHHhhCcceee
Q 010709 443 VAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 443 v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
|++||+||+|+++..|+||+|| ||.
T Consensus 713 v~~VI~yD~p~s~~~~iQr~GR-GR~ 737 (936)
T 4a2w_A 713 CNLVVLYEYSGNVTKMIQVRGR-GRA 737 (936)
T ss_dssp CSEEEEESCCSCSHHHHCC-------
T ss_pred CCEEEEeCCCCCHHHHHHhcCC-CCC
Confidence 9999999999999999999999 995
No 32
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=8.8e-44 Score=381.99 Aligned_cols=317 Identities=21% Similarity=0.284 Sum_probs=218.4
Q ss_pred CCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHH-HHHHHHHhcc
Q 010709 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI-EKEVKALSRS 220 (503)
Q Consensus 142 ~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~-~~~~~~~~~~ 220 (503)
..|+++|.++++.+++|+++++++|||+|||++|++|++..+..... ...++++|||+|+++|+.|+ .+++++++..
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~--~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH--HTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc--cCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 37999999999999999999999999999999999999887665321 12236799999999999999 9999999854
Q ss_pred CCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHH------HcCCCCCCCccEEEecchhHHhhCC-CHHHHHHH
Q 010709 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL------QQGNTSLSRVSFVILDEADRMLDMG-FEPQIREV 293 (503)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l------~~~~~~l~~~~~vViDEaH~l~~~~-~~~~~~~i 293 (503)
.+.+..++|+.........+...++|+|+||++|.+.+ ....+.+.++++|||||||++...+ +...+...
T Consensus 84 --~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~ 161 (699)
T 4gl2_A 84 --WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHY 161 (699)
T ss_dssp --TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHH
T ss_pred --CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHH
Confidence 37888899887665555555677999999999999888 3445678899999999999875543 22222222
Q ss_pred HHh----C---------CCCCcEEEEEeeCCHH-----------HHHHHHHh------------------cCCCeEEEeC
Q 010709 294 MQN----L---------PDKHQTLLFSATMPVE-----------IEALAQEY------------------LTDPVQVKVG 331 (503)
Q Consensus 294 l~~----~---------~~~~q~i~~SAT~~~~-----------~~~~~~~~------------------~~~~~~~~~~ 331 (503)
+.. . .+..++++||||+... +..+...+ ...|......
T Consensus 162 l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~ 241 (699)
T 4gl2_A 162 LMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAI 241 (699)
T ss_dssp HHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEE
T ss_pred HHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEE
Confidence 221 1 1567899999999852 22222221 1111111000
Q ss_pred CCCCCC-----------------------CceE-----------------------------------------------
Q 010709 332 KVSSPT-----------------------ANVI----------------------------------------------- 341 (503)
Q Consensus 332 ~~~~~~-----------------------~~~~----------------------------------------------- 341 (503)
...... ....
T Consensus 242 ~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 321 (699)
T 4gl2_A 242 ADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMID 321 (699)
T ss_dssp EC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred cccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 0000
Q ss_pred ------------------------EEEEEcC--------------------------hhhHHHHHHHHHHHHHHhhhccC
Q 010709 342 ------------------------QILEKVS--------------------------ENEKVDRLLALLVEEAFLAEKSC 371 (503)
Q Consensus 342 ------------------------~~~~~~~--------------------------~~~k~~~l~~~l~~~~~~~~~~~ 371 (503)
....... ...|...+..++..... .
T Consensus 322 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~-----~ 396 (699)
T 4gl2_A 322 AYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYT-----R 396 (699)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHH-----H
T ss_pred HHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh-----c
Confidence 0000000 00000011111111110 0
Q ss_pred CC-CCcEEEEEcchhhHHHHHHHHHHC------CCeEEEEcCC--------CCHHHHHHHHHHHhcCCCcEEEEcccccc
Q 010709 372 HP-FPLTIVFVERKTRCDEVSEALVAE------GLHAVALHGG--------RNQSDRESALRDFRNGSTNILVATDVASR 436 (503)
Q Consensus 372 ~~-~~~~lIF~~~~~~~~~l~~~L~~~------~~~v~~lh~~--------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 436 (503)
.+ .+++||||+++..++.+++.|... |+.+..+||+ |++.+|.++++.|++|+.+|||||+++++
T Consensus 397 ~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~ 476 (699)
T 4gl2_A 397 TEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEE 476 (699)
T ss_dssp SSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCT
T ss_pred CCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcccccc
Confidence 12 578999999999999999999987 8999999999 99999999999999999999999999999
Q ss_pred CCCCCCCCEEEEccCCCChhHHHHhhCccee
Q 010709 437 GLDVMGVAHVVNLDLPKVLLAASESLCTTSF 467 (503)
Q Consensus 437 Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR 467 (503)
|||+|++++||+||+|+++..|+||+|||||
T Consensus 477 GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr 507 (699)
T 4gl2_A 477 GLDIKECNIVIRYGLVTNEIAMVQARGRARA 507 (699)
T ss_dssp TSCCCSCCCCEEESCCCCHHHHHHHHTTSCS
T ss_pred CCccccCCEEEEeCCCCCHHHHHHHcCCCCC
Confidence 9999999999999999999999999999888
No 33
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=3.9e-43 Score=387.02 Aligned_cols=278 Identities=19% Similarity=0.279 Sum_probs=218.0
Q ss_pred HHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q 010709 137 EFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (503)
Q Consensus 137 ~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 216 (503)
..+||. | ++|.++++.++.|+|++++||||+|||+ |.+|++..+... ++++||++||++||.|+++.+++
T Consensus 52 ~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~-------~~~~lil~PtreLa~Q~~~~l~~ 121 (1054)
T 1gku_B 52 KCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALK-------GKRCYVIFPTSLLVIQAAETIRK 121 (1054)
T ss_dssp TTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTT-------SCCEEEEESCHHHHHHHHHHHHH
T ss_pred HhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhc-------CCeEEEEeccHHHHHHHHHHHHH
Confidence 347999 9 9999999999999999999999999998 889998887653 57899999999999999999999
Q ss_pred HhccCCCc----eEEEEECCccHHHH---HHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHH
Q 010709 217 LSRSLDSF----KTAIVVGGTNIAEQ---RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQ 289 (503)
Q Consensus 217 ~~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~ 289 (503)
++... ++ .+..++|+.....+ ...+.. ++|+|+||++|.+++.+ +.++++|||||||++++ +...
T Consensus 122 l~~~~-~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~~~~ 193 (1054)
T 1gku_B 122 YAEKA-GVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--ASKN 193 (1054)
T ss_dssp HHTTT-CCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--STHH
T ss_pred HHhhc-CCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--cccc
Confidence 98765 46 78899999877653 344445 99999999999987765 66899999999999998 4677
Q ss_pred HHHHHHhC-----------CCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHH
Q 010709 290 IREVMQNL-----------PDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLA 358 (503)
Q Consensus 290 ~~~il~~~-----------~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 358 (503)
+..++..+ +...|++++|||++.. ..+...++.++..+.+.........+.+.+.. ..+...+..
T Consensus 194 ~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~---~~k~~~L~~ 269 (1054)
T 1gku_B 194 VDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAVN---DESISTLSS 269 (1054)
T ss_dssp HHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEES---CCCTTTTHH
T ss_pred HHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEec---hhHHHHHHH
Confidence 88887776 3467899999999876 43333333333333333333344455555552 333334444
Q ss_pred HHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEE----cccc
Q 010709 359 LLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA----TDVA 434 (503)
Q Consensus 359 ~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLva----T~~~ 434 (503)
++... .+++||||++++.|+.+++.|... +.+..+||++. ++++.|++|+.+|||| |+++
T Consensus 270 ll~~~----------~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~ 333 (1054)
T 1gku_B 270 ILEKL----------GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTL 333 (1054)
T ss_dssp HHTTS----------CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC-----
T ss_pred HHhhc----------CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCee
Confidence 43221 356999999999999999999988 99999999984 7889999999999999 9999
Q ss_pred ccCCCCCCC-CEEEEccCC
Q 010709 435 SRGLDVMGV-AHVVNLDLP 452 (503)
Q Consensus 435 ~~Gldip~v-~~VI~~~~p 452 (503)
++|||+|+| ++||++|+|
T Consensus 334 ~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 334 VRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp -CCSCCTTTCCEEEEESCC
T ss_pred EeccccCCcccEEEEeCCC
Confidence 999999996 999999999
No 34
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.1e-41 Score=372.23 Aligned_cols=297 Identities=19% Similarity=0.213 Sum_probs=232.7
Q ss_pred CCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q 010709 139 HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (503)
Q Consensus 139 ~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 218 (503)
++| .|+++|.++++.+++|+++++++|||+|||++|++++...... ++++||++|+++|+.|+++.+++++
T Consensus 36 ~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~--------g~~vlvl~PtraLa~Q~~~~l~~~~ 106 (997)
T 4a4z_A 36 WPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN--------MTKTIYTSPIKALSNQKFRDFKETF 106 (997)
T ss_dssp CSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT--------TCEEEEEESCGGGHHHHHHHHHTTC
T ss_pred CCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc--------CCeEEEEeCCHHHHHHHHHHHHHHc
Confidence 344 4899999999999999999999999999999998888765432 5789999999999999999998865
Q ss_pred ccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhCC
Q 010709 219 RSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP 298 (503)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~ 298 (503)
. ++.+..++|+... ...++|+|+||++|.+++.+....+.++++|||||||++.+++++..+..++..++
T Consensus 107 ~---~~~v~~l~G~~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~ 176 (997)
T 4a4z_A 107 D---DVNIGLITGDVQI-------NPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLP 176 (997)
T ss_dssp -----CCEEEECSSCEE-------CTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSC
T ss_pred C---CCeEEEEeCCCcc-------CCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcc
Confidence 3 4678888887643 34589999999999999988777789999999999999999999999999999999
Q ss_pred CCCcEEEEEeeCCHHHHHHHHHh---cCCCeEEEeCCCCCCCCceEEEEEE-------c---------------------
Q 010709 299 DKHQTLLFSATMPVEIEALAQEY---LTDPVQVKVGKVSSPTANVIQILEK-------V--------------------- 347 (503)
Q Consensus 299 ~~~q~i~~SAT~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-------~--------------------- 347 (503)
+..|+|++|||+++.. .+...+ ...+..+...... ...+.+.+.. +
T Consensus 177 ~~v~iIlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r--~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 253 (997)
T 4a4z_A 177 QHVKFILLSATVPNTY-EFANWIGRTKQKNIYVISTPKR--PVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGE 253 (997)
T ss_dssp TTCEEEEEECCCTTHH-HHHHHHHHHHTCCEEEEECSSC--SSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC--
T ss_pred cCCCEEEEcCCCCChH-HHHHHHhcccCCceEEEecCCC--CccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcc
Confidence 9999999999997543 233322 2223322221111 1111111110 0
Q ss_pred -----------------------------------------------------------------ChhhHHHHHHHHHHH
Q 010709 348 -----------------------------------------------------------------SENEKVDRLLALLVE 362 (503)
Q Consensus 348 -----------------------------------------------------------------~~~~k~~~l~~~l~~ 362 (503)
....+...++..+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~ 333 (997)
T 4a4z_A 254 SAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRK 333 (997)
T ss_dssp ---------------------------------------------------------------CCCCTTHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHh
Confidence 011112222222222
Q ss_pred HHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCC---------------------------------------eEEE
Q 010709 363 EAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGL---------------------------------------HAVA 403 (503)
Q Consensus 363 ~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~---------------------------------------~v~~ 403 (503)
....++||||++++.|+.+++.|...++ .+..
T Consensus 334 ---------~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~ 404 (997)
T 4a4z_A 334 ---------RELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAV 404 (997)
T ss_dssp ---------TTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEE
T ss_pred ---------CCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeee
Confidence 2345799999999999999999976555 5789
Q ss_pred EcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCC---------ChhHHHHhhCccee
Q 010709 404 LHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPK---------VLLAASESLCTTSF 467 (503)
Q Consensus 404 lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~---------s~~~~~Qr~GR~gR 467 (503)
+||+|++.+|..+++.|++|.++|||||+++++|||+|+ ..||+++.|+ +..+|+||+|||||
T Consensus 405 ~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR 476 (997)
T 4a4z_A 405 HHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGR 476 (997)
T ss_dssp ECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCC
T ss_pred ecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhccccc
Confidence 999999999999999999999999999999999999999 7778777776 99999999999999
No 35
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=5.2e-41 Score=358.26 Aligned_cols=326 Identities=17% Similarity=0.206 Sum_probs=242.1
Q ss_pred CCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCe
Q 010709 118 APIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPL 196 (503)
Q Consensus 118 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~-~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~ 196 (503)
.++..|+++++++.+.+.+...+ ..|++.|+++++.++.+ ++++++||||+|||+ ++|++....... .+.+++
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~---~~~g~~ 142 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMP---HLENTQ 142 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCG---GGGTCE
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccc---cCCCce
Confidence 35667999999999999999888 78999999999988754 579999999999999 466664332211 112567
Q ss_pred EEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEec
Q 010709 197 ALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILD 276 (503)
Q Consensus 197 ~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViD 276 (503)
+++++|+++|+.|+++.+.+.........++....... ....+++|+++|||++.+.+.. ...+.++++||||
T Consensus 143 ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~-~~~l~~~~~lIlD 215 (773)
T 2xau_A 143 VACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAME-DHDLSRYSCIILD 215 (773)
T ss_dssp EEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHH-STTCTTEEEEEEC
T ss_pred EEecCchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhh-CccccCCCEEEec
Confidence 99999999999999988766542111122221111110 1124689999999999988876 3568899999999
Q ss_pred chhH-HhhCCC-HHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHH
Q 010709 277 EADR-MLDMGF-EPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVD 354 (503)
Q Consensus 277 EaH~-l~~~~~-~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 354 (503)
|+|. .++.++ ...+..++.. .++.|+|+||||++. .. +..++.++..+.+.... ..+.+.+.......+..
T Consensus 216 Eah~R~ld~d~~~~~l~~l~~~-~~~~~iIl~SAT~~~--~~-l~~~~~~~~vi~v~gr~---~pv~~~~~~~~~~~~~~ 288 (773)
T 2xau_A 216 EAHERTLATDILMGLLKQVVKR-RPDLKIIIMSATLDA--EK-FQRYFNDAPLLAVPGRT---YPVELYYTPEFQRDYLD 288 (773)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHH-CTTCEEEEEESCSCC--HH-HHHHTTSCCEEECCCCC---CCEEEECCSSCCSCHHH
T ss_pred CccccccchHHHHHHHHHHHHh-CCCceEEEEeccccH--HH-HHHHhcCCCcccccCcc---cceEEEEecCCchhHHH
Confidence 9995 554332 2334444444 457899999999964 33 34566655455444332 23555554444444444
Q ss_pred HHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHH-----------CCCeEEEEcCCCCHHHHHHHHHHHh--
Q 010709 355 RLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVA-----------EGLHAVALHGGRNQSDRESALRDFR-- 421 (503)
Q Consensus 355 ~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~-----------~~~~v~~lh~~~~~~~r~~~~~~f~-- 421 (503)
..+..+...... .+.+++||||+++++++.+++.|.+ .++.+..+||++++.+|.++++.|+
T Consensus 289 ~~l~~l~~~~~~-----~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~ 363 (773)
T 2xau_A 289 SAIRTVLQIHAT-----EEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPES 363 (773)
T ss_dssp HHHHHHHHHHHH-----SCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCC
T ss_pred HHHHHHHHHHHh-----cCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccc
Confidence 444444333221 2457899999999999999999985 5788999999999999999999999
Q ss_pred ---cCCCcEEEEccccccCCCCCCCCEEEEccC------------------CCChhHHHHhhCcceee
Q 010709 422 ---NGSTNILVATDVASRGLDVMGVAHVVNLDL------------------PKVLLAASESLCTTSFN 468 (503)
Q Consensus 422 ---~g~~~vLvaT~~~~~Gldip~v~~VI~~~~------------------p~s~~~~~Qr~GR~gR~ 468 (503)
+|..+|||||+++++|||||+|++||++|+ |.+.++|+||+|||||.
T Consensus 364 ~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~ 431 (773)
T 2xau_A 364 HNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT 431 (773)
T ss_dssp SSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS
T ss_pred cCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC
Confidence 999999999999999999999999999888 88999999999999995
No 36
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=1.4e-40 Score=344.35 Aligned_cols=313 Identities=18% Similarity=0.205 Sum_probs=218.4
Q ss_pred CCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q 010709 139 HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (503)
Q Consensus 139 ~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 218 (503)
.|. +|+++|..+++.++.|+ |+.++||+|||++|.+|++...+. ++.++|++||++||.|.++.+..++
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~--------g~~vlVltPTreLA~Q~~e~~~~l~ 139 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAENNRPLF 139 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT--------SSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc--------CCcEEEEcCCHHHHHHHHHHHHHHH
Confidence 454 89999999999999998 999999999999999999865432 5679999999999999999999999
Q ss_pred ccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHH-HHHHHcCC------CCCCCccEEEecchhHHh-hCC-----
Q 010709 219 RSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGN------TSLSRVSFVILDEADRML-DMG----- 285 (503)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~~------~~l~~~~~vViDEaH~l~-~~~----- 285 (503)
..+ ++++.+++||..... +....+++|+|+||++| .+++..+. ..++++.++|+||||+|+ +.+
T Consensus 140 ~~l-gl~v~~i~GG~~~~~--r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLI 216 (853)
T 2fsf_A 140 EFL-GLTVGINLPGMPAPA--KREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLI 216 (853)
T ss_dssp HHT-TCCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEE
T ss_pred Hhc-CCeEEEEeCCCCHHH--HHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCccccc
Confidence 877 699999999987643 33445699999999999 77776542 567899999999999998 443
Q ss_pred ----------CHHHHHHHHHhCCC--------------------CCcEE------------------------EEEeeCC
Q 010709 286 ----------FEPQIREVMQNLPD--------------------KHQTL------------------------LFSATMP 311 (503)
Q Consensus 286 ----------~~~~~~~il~~~~~--------------------~~q~i------------------------~~SAT~~ 311 (503)
|...+..++..+++ ..|++ ++|||.+
T Consensus 217 iSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~ 296 (853)
T 2fsf_A 217 ISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANI 296 (853)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred ccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccc
Confidence 56677788877764 44543 7899975
Q ss_pred HHHHHH-----HHHhcC--------CC-----------------------------eEEEeCCCCCCCCceE--------
Q 010709 312 VEIEAL-----AQEYLT--------DP-----------------------------VQVKVGKVSSPTANVI-------- 341 (503)
Q Consensus 312 ~~~~~~-----~~~~~~--------~~-----------------------------~~~~~~~~~~~~~~~~-------- 341 (503)
.-...+ +..++. ++ ..+.+.........+.
T Consensus 297 ~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y 376 (853)
T 2fsf_A 297 MLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLY 376 (853)
T ss_dssp ------------------------------------------------------------CCCCCEEEEEEEHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhh
Confidence 321111 111110 00 0111111100000011
Q ss_pred ---------------------------------------EEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEc
Q 010709 342 ---------------------------------------QILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVE 382 (503)
Q Consensus 342 ---------------------------------------~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~ 382 (503)
..+.......|...+...+.... ..+.++||||+
T Consensus 377 ~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~-------~~gqpvLVft~ 449 (853)
T 2fsf_A 377 EKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERT-------AKGQPVLVGTI 449 (853)
T ss_dssp SEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHH-------TTTCCEEEEES
T ss_pred hhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHh-------cCCCCEEEEEC
Confidence 11244566778878777775532 13346999999
Q ss_pred chhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCC-------------------
Q 010709 383 RKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGV------------------- 443 (503)
Q Consensus 383 ~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v------------------- 443 (503)
+++.++.|++.|.+.|+.+..+||++.+.++..+.+.|+.| .|+|||++++||+||+..
T Consensus 450 sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~ 527 (853)
T 2fsf_A 450 SIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIE 527 (853)
T ss_dssp SHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHH
T ss_pred cHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHH
Confidence 99999999999999999999999999999998888888887 699999999999999973
Q ss_pred ------------------CEEEEccCCCChhHHHHhhCcceee--------eeeccC
Q 010709 444 ------------------AHVVNLDLPKVLLAASESLCTTSFN--------ITTNLD 474 (503)
Q Consensus 444 ------------------~~VI~~~~p~s~~~~~Qr~GR~gR~--------~~~~~~ 474 (503)
.+||++++|.+...|.||+||+||. +++..|
T Consensus 528 ~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 528 KIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMED 584 (853)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred HHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccH
Confidence 5999999999999999999999993 566665
No 37
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.6e-40 Score=375.15 Aligned_cols=329 Identities=15% Similarity=0.172 Sum_probs=239.9
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHH
Q 010709 128 LHPSIMKDIEFHEYTRPTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (503)
Q Consensus 128 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~-~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~L 206 (503)
+.+...+.+...+|..++|+|.++++.++++ +|++++||||||||++|.+|++..+... .+.++||++|+++|
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~------~~~kavyi~P~raL 984 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS------SEGRCVYITPMEAL 984 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC------TTCCEEEECSCHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC------CCCEEEEEcChHHH
Confidence 5566778888889999999999999999865 5799999999999999999999988764 25679999999999
Q ss_pred HHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCC--CCCCCccEEEecchhHHhhC
Q 010709 207 AQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN--TSLSRVSFVILDEADRMLDM 284 (503)
Q Consensus 207 a~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~--~~l~~~~~vViDEaH~l~~~ 284 (503)
|.|.++.+++.+...-++++..++|+...... ...+++|+|||||++..++.+.. ..++++++||+||+|.+.+
T Consensus 985 a~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d- 1060 (1724)
T 4f92_B 985 AEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG- 1060 (1724)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGS-
T ss_pred HHHHHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCC-
Confidence 99999999865433336888888887654332 22458999999999977776532 3467899999999997765
Q ss_pred CCHHHHHHHHH-------hCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHH
Q 010709 285 GFEPQIREVMQ-------NLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLL 357 (503)
Q Consensus 285 ~~~~~~~~il~-------~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 357 (503)
..+..++.++. ..+++.|+|+||||+++ ..++++..-.++..+...........+..++...........+.
T Consensus 1061 ~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~ 1139 (1724)
T 4f92_B 1061 ENGPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLL 1139 (1724)
T ss_dssp TTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHH
T ss_pred CCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhh
Confidence 46666655543 34678999999999974 44455544333322222222222223444443333222222221
Q ss_pred HHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHC----------------------------------CCeEEE
Q 010709 358 ALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE----------------------------------GLHAVA 403 (503)
Q Consensus 358 ~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~----------------------------------~~~v~~ 403 (503)
.... ..........+.+++||||++++.|+.++..|... ...+..
T Consensus 1140 ~~~~-~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~ 1218 (1724)
T 4f92_B 1140 SMAK-PVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGY 1218 (1724)
T ss_dssp TTHH-HHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEE
T ss_pred hhcc-hHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEE
Confidence 1111 11111111245668999999999999888776431 135889
Q ss_pred EcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEE----c------cCCCChhHHHHhhCcceee
Q 010709 404 LHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN----L------DLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 404 lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~----~------~~p~s~~~~~Qr~GR~gR~ 468 (503)
+|++|++.+|..+++.|++|.++|||||+.+++|||+|+..+||. | ..|.+..+|.||+|||||.
T Consensus 1219 hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~ 1293 (1724)
T 4f92_B 1219 LHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRP 1293 (1724)
T ss_dssp ECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCT
T ss_pred ECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCC
Confidence 999999999999999999999999999999999999999888883 2 2367899999999999994
No 38
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=1.3e-39 Score=302.81 Aligned_cols=236 Identities=43% Similarity=0.729 Sum_probs=216.2
Q ss_pred CHHHHHHHHHHcCceEEecCCCCCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCch
Q 010709 92 NPEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGK 171 (503)
Q Consensus 92 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGK 171 (503)
++++++.++...++.+... ..|.++.+|+++++++.+.+.+..+||..|+++|.++++.+++|+++++++|||+||
T Consensus 4 ~~~~~~~~~~~~~i~~~~~----~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGK 79 (242)
T 3fe2_A 4 TAQEVETYRRSKEITVRGH----NCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGK 79 (242)
T ss_dssp --CHHHHHHHHHTEEEESS----CCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCH
T ss_pred CHHHHHHHHhcCceEEeCC----CCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHH
Confidence 4567888999998888765 678899999999999999999999999999999999999999999999999999999
Q ss_pred hHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEE
Q 010709 172 TAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVA 251 (503)
Q Consensus 172 Tl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~ 251 (503)
|++|++|++..+...+......++++||++||++|+.|+++.+++++... ++.+..++|+.........+..+++|+|+
T Consensus 80 T~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~I~v~ 158 (242)
T 3fe2_A 80 TLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQIRDLERGVEICIA 158 (242)
T ss_dssp HHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHT-TCCEEEECTTSCHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhc-CceEEEEECCCChHHHHHHhcCCCCEEEE
Confidence 99999999999887655555568899999999999999999999998765 58899999999988888888888999999
Q ss_pred CcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeC
Q 010709 252 TPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVG 331 (503)
Q Consensus 252 Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 331 (503)
||++|.+.+.+....+.++++||+||||++.+++|...+..++..++++.|+++||||+++.+..+++.++.+|..+.++
T Consensus 159 Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~ 238 (242)
T 3fe2_A 159 TPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG 238 (242)
T ss_dssp CHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred CHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 99999999988888899999999999999999999999999999999999999999999999999999999999998876
Q ss_pred C
Q 010709 332 K 332 (503)
Q Consensus 332 ~ 332 (503)
.
T Consensus 239 ~ 239 (242)
T 3fe2_A 239 A 239 (242)
T ss_dssp C
T ss_pred C
Confidence 4
No 39
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=4.5e-39 Score=356.65 Aligned_cols=309 Identities=17% Similarity=0.171 Sum_probs=238.4
Q ss_pred CCCHHHHHHH-HHCCCCCCcHHHHHHHHHHhc----CC--CeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEE
Q 010709 127 CLHPSIMKDI-EFHEYTRPTSIQAQAMPVALS----GR--DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (503)
Q Consensus 127 ~l~~~l~~~l-~~~~~~~~~~~Q~~~i~~i~~----~~--~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~li 199 (503)
+.++.+.+.+ ..++|. |+++|.++++.++. ++ +++++++||+|||++|+++++..... +++++|
T Consensus 587 ~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~--------g~~vlv 657 (1151)
T 2eyq_A 587 KHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN--------HKQVAV 657 (1151)
T ss_dssp CCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT--------TCEEEE
T ss_pred CCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh--------CCeEEE
Confidence 4455566665 445664 79999999999886 65 89999999999999998888775432 578999
Q ss_pred EcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHH---HHhh-CCCcEEEECcHHHHHHHHcCCCCCCCccEEEe
Q 010709 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR---SELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVIL 275 (503)
Q Consensus 200 l~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vVi 275 (503)
++||++|+.|+++.+++++... ++.+..+.+.....+.. ..+. +.++|+|+||+.+. ....+.++++|||
T Consensus 658 lvPt~~La~Q~~~~~~~~~~~~-~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 658 LVPTTLLAQQHYDNFRDRFANW-PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIV 731 (1151)
T ss_dssp ECSSHHHHHHHHHHHHHHSTTT-TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEE
T ss_pred EechHHHHHHHHHHHHHHhhcC-CCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEE
Confidence 9999999999999999887654 47788887766554432 2233 35999999997663 3567889999999
Q ss_pred cchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHH
Q 010709 276 DEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDR 355 (503)
Q Consensus 276 DEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 355 (503)
||||++ .......+..++.+.++++||||+.+.........+.++..+ .........+...+........
T Consensus 732 DEaH~~-----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i--~~~~~~r~~i~~~~~~~~~~~i--- 801 (1151)
T 2eyq_A 732 DEEHRF-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSII--ATPPARRLAVKTFVREYDSMVV--- 801 (1151)
T ss_dssp ESGGGS-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEEC--CCCCCBCBCEEEEEEECCHHHH---
T ss_pred echHhc-----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEE--ecCCCCccccEEEEecCCHHHH---
Confidence 999984 344566677777788999999999777666665555544332 2222223334444444333222
Q ss_pred HHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHC--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc
Q 010709 356 LLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDV 433 (503)
Q Consensus 356 l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~--~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~ 433 (503)
...+.... ..+++++|||++++.++.+++.|.+. +..+..+||+|++.+|.++++.|++|+.+|||||++
T Consensus 802 -~~~il~~l-------~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v 873 (1151)
T 2eyq_A 802 -REAILREI-------LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTI 873 (1151)
T ss_dssp -HHHHHHHH-------TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESST
T ss_pred -HHHHHHHH-------hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCc
Confidence 22222221 23467999999999999999999987 889999999999999999999999999999999999
Q ss_pred cccCCCCCCCCEEEEccC-CCChhHHHHhhCcceee
Q 010709 434 ASRGLDVMGVAHVVNLDL-PKVLLAASESLCTTSFN 468 (503)
Q Consensus 434 ~~~Gldip~v~~VI~~~~-p~s~~~~~Qr~GR~gR~ 468 (503)
+++|+|+|++++||+++. +.++.+|.||+||+||.
T Consensus 874 ~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~ 909 (1151)
T 2eyq_A 874 IETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRS 909 (1151)
T ss_dssp TGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBT
T ss_pred ceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcC
Confidence 999999999999999998 46899999999999993
No 40
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.7e-40 Score=351.78 Aligned_cols=307 Identities=21% Similarity=0.243 Sum_probs=228.6
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHhcC------CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccc
Q 010709 130 PSIMKDIEFHEYTRPTSIQAQAMPVALSG------RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPT 203 (503)
Q Consensus 130 ~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~------~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Pt 203 (503)
+.+.+.+..++| .|+++|.++++.++++ .+++++||||+|||++|++|++..+.. +.+++|++||
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~--------g~qvlvlaPt 426 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA--------GFQTAFMVPT 426 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH--------TSCEEEECSC
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCc
Confidence 344455678899 9999999999998865 589999999999999999999987654 5789999999
Q ss_pred HHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHH---HHhh-CCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchh
Q 010709 204 RELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR---SELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD 279 (503)
Q Consensus 204 r~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH 279 (503)
++||.|+++.+++++... ++++..++|+....+.. ..+. +.++|+|+||+.+.+ ...+.++++|||||+|
T Consensus 427 r~La~Q~~~~l~~~~~~~-gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaH 500 (780)
T 1gm5_A 427 SILAIQHYRRTVESFSKF-NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQH 500 (780)
T ss_dssp HHHHHHHHHHHHHHHTCS-SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCC
T ss_pred HHHHHHHHHHHHHHhhhc-CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccc
Confidence 999999999999998655 58899999998766533 2333 359999999998754 4568899999999999
Q ss_pred HHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHH
Q 010709 280 RMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLAL 359 (503)
Q Consensus 280 ~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 359 (503)
++... .+..+.......++++||||+.+..... .++.+.....+.........+...+ ....+...++..
T Consensus 501 r~g~~-----qr~~l~~~~~~~~vL~mSATp~p~tl~~--~~~g~~~~s~i~~~p~~r~~i~~~~---~~~~~~~~l~~~ 570 (780)
T 1gm5_A 501 RFGVK-----QREALMNKGKMVDTLVMSATPIPRSMAL--AFYGDLDVTVIDEMPPGRKEVQTML---VPMDRVNEVYEF 570 (780)
T ss_dssp CC----------CCCCSSSSCCCEEEEESSCCCHHHHH--HHTCCSSCEEECCCCSSCCCCEECC---CCSSTHHHHHHH
T ss_pred hhhHH-----HHHHHHHhCCCCCEEEEeCCCCHHHHHH--HHhCCcceeeeeccCCCCcceEEEE---eccchHHHHHHH
Confidence 85321 1222333345688999999986654433 2333322222222221122222221 122334445555
Q ss_pred HHHHHHhhhccCCCCCcEEEEEcch--------hhHHHHHHHHHH---CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEE
Q 010709 360 LVEEAFLAEKSCHPFPLTIVFVERK--------TRCDEVSEALVA---EGLHAVALHGGRNQSDRESALRDFRNGSTNIL 428 (503)
Q Consensus 360 l~~~~~~~~~~~~~~~~~lIF~~~~--------~~~~~l~~~L~~---~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vL 428 (503)
+.... ...++++|||+.. ..++.+++.|.. .++.+..+||+|++.+|..+++.|++|+.+||
T Consensus 571 i~~~l-------~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~IL 643 (780)
T 1gm5_A 571 VRQEV-------MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDIL 643 (780)
T ss_dssp HHHHT-------TTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBC
T ss_pred HHHHH-------hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEE
Confidence 54432 2345699999965 457888888887 47889999999999999999999999999999
Q ss_pred EEccccccCCCCCCCCEEEEccCCC-ChhHHHHhhCcceee
Q 010709 429 VATDVASRGLDVMGVAHVVNLDLPK-VLLAASESLCTTSFN 468 (503)
Q Consensus 429 vaT~~~~~Gldip~v~~VI~~~~p~-s~~~~~Qr~GR~gR~ 468 (503)
|||+++++|+|+|++++||+++.|+ +...|.||+||+||.
T Consensus 644 VaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~ 684 (780)
T 1gm5_A 644 VSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRG 684 (780)
T ss_dssp CCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCS
T ss_pred EECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcC
Confidence 9999999999999999999999997 688999999999994
No 41
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=4.6e-40 Score=374.24 Aligned_cols=320 Identities=20% Similarity=0.254 Sum_probs=234.5
Q ss_pred CCCCCcHHHHHHHHHHh-cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCC---CCCCCCeEEEEcccHHHHHHHHHHHH
Q 010709 140 EYTRPTSIQAQAMPVAL-SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPV---GRGDGPLALVLAPTRELAQQIEKEVK 215 (503)
Q Consensus 140 ~~~~~~~~Q~~~i~~i~-~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~---~~~~~~~~lil~Ptr~La~q~~~~~~ 215 (503)
||+.++++|.++++.++ .++|++++||||+|||++|.++++..+...... ....+.++||++|+++||+|+++.++
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 79999999999999987 467899999999999999999999988765432 22357899999999999999999999
Q ss_pred HHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCC--CCCCCccEEEecchhHHhhCCCHHHHHHH
Q 010709 216 ALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN--TSLSRVSFVILDEADRMLDMGFEPQIREV 293 (503)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~--~~l~~~~~vViDEaH~l~~~~~~~~~~~i 293 (503)
+.+... ++++..++|+...... ...+++|+|||||++..++.+.. ..++++++|||||+|.+.+ .++..++.+
T Consensus 156 ~~~~~~-gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~ 230 (1724)
T 4f92_B 156 KRLATY-GITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEAL 230 (1724)
T ss_dssp HHHTTT-TCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHH
T ss_pred HHHhhC-CCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHH
Confidence 887665 5889999998764332 12458999999999865554432 2367899999999996644 677777655
Q ss_pred HH-------hCCCCCcEEEEEeeCCHHHHHHHHHhcC-CCe--EEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHH
Q 010709 294 MQ-------NLPDKHQTLLFSATMPVEIEALAQEYLT-DPV--QVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEE 363 (503)
Q Consensus 294 l~-------~~~~~~q~i~~SAT~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~ 363 (503)
+. ..+++.|+|+||||+|+ .+++++ |++ ++. ...+..... ...+.+.+........... ...+...
T Consensus 231 l~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~-wL~~~~~~~~~~~~~~~R-PvpL~~~~~~~~~~~~~~~-~~~~~~~ 306 (1724)
T 4f92_B 231 VARAIRNIEMTQEDVRLIGLSATLPN-YEDVAT-FLRVDPAKGLFYFDNSFR-PVPLEQTYVGITEKKAIKR-FQIMNEI 306 (1724)
T ss_dssp HHHHHHHHHHHTCCCEEEEEECSCTT-HHHHHH-HTTCCHHHHEEECCGGGC-SSCEEEECCEECCCCHHHH-HHHHHHH
T ss_pred HHHHHHHHHhCCCCCcEEEEecccCC-HHHHHH-HhCCCCCCCeEEECCCCc-cCccEEEEeccCCcchhhh-hHHHHHH
Confidence 54 34678999999999974 444544 443 211 112222222 2234444333332221111 1111111
Q ss_pred HHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHC-------------------------------------CCeEEEEcC
Q 010709 364 AFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-------------------------------------GLHAVALHG 406 (503)
Q Consensus 364 ~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~-------------------------------------~~~v~~lh~ 406 (503)
...........+++||||++++.|+.+++.|.+. ...+..+||
T Consensus 307 ~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHa 386 (1724)
T 4f92_B 307 VYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHA 386 (1724)
T ss_dssp HHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECS
T ss_pred HHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcC
Confidence 1122222234567999999999999998888541 134889999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEE----ccC------CCChhHHHHhhCcceee
Q 010709 407 GRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN----LDL------PKVLLAASESLCTTSFN 468 (503)
Q Consensus 407 ~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~----~~~------p~s~~~~~Qr~GR~gR~ 468 (503)
+|++.+|..+++.|++|.++|||||+.+++|||+|++++||. |+. |-+..+|.||+|||||.
T Consensus 387 gL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~ 458 (1724)
T 4f92_B 387 GMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRP 458 (1724)
T ss_dssp SSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCT
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCC
Confidence 999999999999999999999999999999999999998885 443 45889999999999994
No 42
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=9.5e-39 Score=330.94 Aligned_cols=308 Identities=17% Similarity=0.196 Sum_probs=241.4
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHH
Q 010709 138 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (503)
Q Consensus 138 ~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 217 (503)
..|+ +|+++|..+++.+++|+ |+.++||+|||++|.+|++...+. ++.++||+||++||.|.++.+..+
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~--------g~~v~VvTpTreLA~Qdae~m~~l 175 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA--------GNGVHIVTVNDYLAKRDSEWMGRV 175 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT--------TSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHHHHHHH
Confidence 4688 99999999999999998 999999999999999999865443 467999999999999999999999
Q ss_pred hccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHH-HHHHHcC------CCCCCCccEEEecchhHHh-hC-----
Q 010709 218 SRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQG------NTSLSRVSFVILDEADRML-DM----- 284 (503)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~------~~~l~~~~~vViDEaH~l~-~~----- 284 (503)
...+ ++++++++||...... ....+++|+|+||++| .+++..+ ...++.+.++||||||+|+ +.
T Consensus 176 ~~~l-GLsv~~i~gg~~~~~r--~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPL 252 (922)
T 1nkt_A 176 HRFL-GLQVGVILATMTPDER--RVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPL 252 (922)
T ss_dssp HHHT-TCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCE
T ss_pred Hhhc-CCeEEEEeCCCCHHHH--HHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccce
Confidence 9877 6999999999875443 3344699999999999 6777654 3567889999999999998 42
Q ss_pred ----------CCHHHHHHHHHhCC---------CCCcEE-----------------EEEeeCCHH---HHHH--HHHhcC
Q 010709 285 ----------GFEPQIREVMQNLP---------DKHQTL-----------------LFSATMPVE---IEAL--AQEYLT 323 (503)
Q Consensus 285 ----------~~~~~~~~il~~~~---------~~~q~i-----------------~~SAT~~~~---~~~~--~~~~~~ 323 (503)
+|...+..++..++ +..|++ ++|||.+.- +... +..++.
T Consensus 253 iiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~ 332 (922)
T 1nkt_A 253 IISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFS 332 (922)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCC
T ss_pred eecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhh
Confidence 47788999999997 678888 889998642 2221 122221
Q ss_pred -C-------CeEEEeCCC--------------------------------------------------------------
Q 010709 324 -D-------PVQVKVGKV-------------------------------------------------------------- 333 (503)
Q Consensus 324 -~-------~~~~~~~~~-------------------------------------------------------------- 333 (503)
+ ...+.++..
T Consensus 333 ~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef 412 (922)
T 1nkt_A 333 RDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAEL 412 (922)
T ss_dssp BTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHH
T ss_pred cccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHH
Confidence 1 111111100
Q ss_pred -------------CCCCCce-EEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCC
Q 010709 334 -------------SSPTANV-IQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGL 399 (503)
Q Consensus 334 -------------~~~~~~~-~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~ 399 (503)
..+.... ...+.......|...+...+..... ...++||||++++.++.|++.|.+.|+
T Consensus 413 ~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~-------~gqpvLVft~Sie~sE~Ls~~L~~~Gi 485 (922)
T 1nkt_A 413 HEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYA-------KGQPVLIGTTSVERSEYLSRQFTKRRI 485 (922)
T ss_dssp HHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHH-------TTCCEEEEESCHHHHHHHHHHHHHTTC
T ss_pred HHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHh-------cCCcEEEEECCHHHHHHHHHHHHHCCC
Confidence 0000000 0123455667788888877765432 223699999999999999999999999
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCC------------------------------------
Q 010709 400 HAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGV------------------------------------ 443 (503)
Q Consensus 400 ~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v------------------------------------ 443 (503)
.+..+||++.+.++..+.+.|+.| .|+|||++++||+||+.+
T Consensus 486 ~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (922)
T 1nkt_A 486 PHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIV 563 (922)
T ss_dssp CCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHH
T ss_pred CEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHH
Confidence 999999999888888888888877 799999999999999975
Q ss_pred ----------------CEEEEccCCCChhHHHHhhCcceee
Q 010709 444 ----------------AHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 444 ----------------~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
.+||++++|.+...|.||+||+||.
T Consensus 564 ~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRq 604 (922)
T 1nkt_A 564 KEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQ 604 (922)
T ss_dssp HHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGG
T ss_pred HHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccC
Confidence 4999999999999999999999994
No 43
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=8.6e-41 Score=345.50 Aligned_cols=302 Identities=15% Similarity=0.132 Sum_probs=225.4
Q ss_pred CCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccC
Q 010709 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (503)
Q Consensus 142 ~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~ 221 (503)
..|+++|.++++.++.++++++++|||+|||++|+.+++..+... ++++|||+|+++|+.|+.+.+++++..
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-------~~~vlvl~P~~~L~~Q~~~~~~~~~~~- 183 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY-------EGKILIIVPTTALTTQMADDFVDYRLF- 183 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC-------SSEEEEEESSHHHHHHHHHHHHHTTSS-
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC-------CCeEEEEECcHHHHHHHHHHHHHhhcC-
Confidence 489999999999999999999999999999999988887765432 358999999999999999999988543
Q ss_pred CCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCC
Q 010709 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKH 301 (503)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~ 301 (503)
.+..+..+.++....++ .....+|+|+||+.|... ....+.++++|||||||++.. ..+..++..+++..
T Consensus 184 ~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~ 253 (510)
T 2oca_A 184 SHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCM 253 (510)
T ss_dssp CGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCC
T ss_pred CccceEEEecCCccccc---cccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCc
Confidence 24677888887665443 456789999999987542 234577899999999998764 56788888888888
Q ss_pred cEEEEEeeCCHHHHHHHH-HhcCCCeEEEeCCC------CCCCCceEEEEEEcChh---------------------hHH
Q 010709 302 QTLLFSATMPVEIEALAQ-EYLTDPVQVKVGKV------SSPTANVIQILEKVSEN---------------------EKV 353 (503)
Q Consensus 302 q~i~~SAT~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~---------------------~k~ 353 (503)
++++||||+++....... ..+..+........ ......+.......+.. .+.
T Consensus 254 ~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (510)
T 2oca_A 254 FKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRN 333 (510)
T ss_dssp EEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHH
T ss_pred EEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHH
Confidence 999999999765432211 11112222211111 11111122222222211 111
Q ss_pred HHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEc-c
Q 010709 354 DRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT-D 432 (503)
Q Consensus 354 ~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT-~ 432 (503)
..+...+..... ....++||||+ .+.++.+++.|.+.+..+..+||++++.+|.++++.|++|+.+||||| +
T Consensus 334 ~~l~~~l~~~~~------~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~ 406 (510)
T 2oca_A 334 KWIAKLAIKLAQ------KDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYG 406 (510)
T ss_dssp HHHHHHHHHHHT------TTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHH
T ss_pred HHHHHHHHHHHh------cCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcC
Confidence 122222222111 12334666666 889999999999998899999999999999999999999999999999 9
Q ss_pred ccccCCCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 433 VASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 433 ~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
++++|+|+|++++||++++|.+...|.||+||+||.
T Consensus 407 ~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~ 442 (510)
T 2oca_A 407 VFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRK 442 (510)
T ss_dssp HHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTT
T ss_pred hhhcccccccCcEEEEeCCCCCHHHHHHHHhccccc
Confidence 999999999999999999999999999999999994
No 44
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.7e-40 Score=336.07 Aligned_cols=275 Identities=14% Similarity=0.171 Sum_probs=203.9
Q ss_pred CCCCCcHHHHHHHHHHhcCCCe-EEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q 010709 140 EYTRPTSIQAQAMPVALSGRDL-LGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (503)
Q Consensus 140 ~~~~~~~~Q~~~i~~i~~~~~v-ii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 218 (503)
|+.+|+|+|. +++.+++++++ ++++|||||||++|++|++...... ++++||++||++|+.|+++.+..
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~-------~~~~lvl~Ptr~La~Q~~~~l~g-- 70 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR-------RLRTLILAPTRVVAAEMEEALRG-- 70 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTTT--
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc-------CCcEEEECCCHHHHHHHHHHhcC--
Confidence 6778999985 79999999886 9999999999999999999876653 57899999999999999988742
Q ss_pred ccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHH-hC
Q 010709 219 RSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ-NL 297 (503)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~-~~ 297 (503)
..+......... ....+..|.++|++.+.+.+.+. ..+.++++|||||||++ +..+...+..+.. ..
T Consensus 71 -----~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~ 138 (451)
T 2jlq_A 71 -----LPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVE 138 (451)
T ss_dssp -----SCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHH
T ss_pred -----ceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhc
Confidence 222211111100 12345679999999998888763 56889999999999976 3322222222222 23
Q ss_pred CCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcE
Q 010709 298 PDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLT 377 (503)
Q Consensus 298 ~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~ 377 (503)
+++.|+++||||++..... .+..++..+..... .+.... ..+...+.+ ..+++
T Consensus 139 ~~~~~~i~~SAT~~~~~~~---~~~~~~~~~~~~~~-~p~~~~-------------~~~~~~l~~----------~~~~~ 191 (451)
T 2jlq_A 139 MGEAAAIFMTATPPGSTDP---FPQSNSPIEDIERE-IPERSW-------------NTGFDWITD----------YQGKT 191 (451)
T ss_dssp TTSCEEEEECSSCTTCCCS---SCCCSSCEEEEECC-CCSSCC-------------SSSCHHHHH----------CCSCE
T ss_pred CCCceEEEEccCCCccchh---hhcCCCceEecCcc-CCchhh-------------HHHHHHHHh----------CCCCE
Confidence 4578999999999875332 22233333332211 000000 001111211 23479
Q ss_pred EEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcc-------
Q 010709 378 IVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLD------- 450 (503)
Q Consensus 378 lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~------- 450 (503)
||||++++.|+.+++.|.+.++.+..+|+++. .++++.|++|+.+|||||+++++|+|+|+ ++||++|
T Consensus 192 lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~ 266 (451)
T 2jlq_A 192 VWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVI 266 (451)
T ss_dssp EEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEE
T ss_pred EEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccc
Confidence 99999999999999999999999999999764 57899999999999999999999999999 9999999
Q ss_pred -------------CCCChhHHHHhhCcceee
Q 010709 451 -------------LPKVLLAASESLCTTSFN 468 (503)
Q Consensus 451 -------------~p~s~~~~~Qr~GR~gR~ 468 (503)
.|.+..+|+||+||+||.
T Consensus 267 d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~ 297 (451)
T 2jlq_A 267 LTDGPERVILAGPIPVTPASAAQRRGRIGRN 297 (451)
T ss_dssp ECSSSCEEEEEEEEECCHHHHHHHHTTSSCC
T ss_pred cccccceeeecccccCCHHHHHHhccccCCC
Confidence 999999999999999995
No 45
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=3.6e-41 Score=350.90 Aligned_cols=289 Identities=15% Similarity=0.166 Sum_probs=213.3
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHH
Q 010709 126 MCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE 205 (503)
Q Consensus 126 ~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~ 205 (503)
+++++.+++.+... ...++|+|+.+++.+++|+++++++|||||||++|++|++..+... ++++||++|||+
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~-------~~~vLvl~Ptre 226 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR-------RLRTLILAPTRV 226 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT-------TCCEEEEESSHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC-------CCeEEEEcChHH
Confidence 34555555444432 4778889888899999999999999999999999999999887663 578999999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCC
Q 010709 206 LAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG 285 (503)
Q Consensus 206 La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~ 285 (503)
||.|+++.++. ..+. +.+... . .....+..+.++|.+.+.+.+... ..+.++++|||||||++ +.+
T Consensus 227 La~Qi~~~l~~-------~~v~-~~~~~l-~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~ 292 (618)
T 2whx_A 227 VAAEMEEALRG-------LPIR-YQTPAV-K---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPC 292 (618)
T ss_dssp HHHHHHHHTTT-------SCEE-ECCTTS-S---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHH
T ss_pred HHHHHHHHhcC-------Ccee-Eecccc-e---eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-Ccc
Confidence 99999987762 2222 111110 0 011234567888999888777653 56889999999999987 556
Q ss_pred CHHHHHHHHHhCC-CCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHH
Q 010709 286 FEPQIREVMQNLP-DKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEA 364 (503)
Q Consensus 286 ~~~~~~~il~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~ 364 (503)
|...+..++..++ ++.|+++||||++..+..+.. .++..+.+.... +. .+...++..+.+
T Consensus 293 ~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~-------------~~-~~~~~ll~~l~~-- 353 (618)
T 2whx_A 293 SVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREI-------------PE-RSWNTGFDWITD-- 353 (618)
T ss_dssp HHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCC-------------CS-SCCSSSCHHHHH--
T ss_pred HHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccC-------------CH-HHHHHHHHHHHh--
Confidence 7777777777664 678999999999876443222 233333322110 00 011112222221
Q ss_pred HhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCC
Q 010709 365 FLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVA 444 (503)
Q Consensus 365 ~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~ 444 (503)
..+++||||++++.|+.+++.|.+.++.+..+||+ +|.++++.|++|+.+|||||+++++|||+| ++
T Consensus 354 --------~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~ 420 (618)
T 2whx_A 354 --------YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AG 420 (618)
T ss_dssp --------CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CS
T ss_pred --------CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ce
Confidence 13479999999999999999999999999999984 688899999999999999999999999998 99
Q ss_pred EE--------------------EEccCCCChhHHHHhhCcceee
Q 010709 445 HV--------------------VNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 445 ~V--------------------I~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
+| |+++.|.+.++|+||+||+||.
T Consensus 421 ~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~ 464 (618)
T 2whx_A 421 RVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRN 464 (618)
T ss_dssp EEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCC
T ss_pred EEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCC
Confidence 98 6777799999999999999996
No 46
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=8.1e-40 Score=337.26 Aligned_cols=263 Identities=21% Similarity=0.236 Sum_probs=199.1
Q ss_pred CCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCC
Q 010709 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (503)
Q Consensus 143 ~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~ 222 (503)
.++.+|.++++.+..+++++++||||+|||++|.+|++.. +.++||++|||+||.|+++.+.+..
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~-----------g~~vLVl~PTReLA~Qia~~l~~~~---- 281 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ-----------GYKVLVLNPSVAATLGFGAYMSKAH---- 281 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT-----------TCCEEEEESCHHHHHHHHHHHHHHH----
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC-----------CCeEEEEcchHHHHHHHHHHHHHHh----
Confidence 3445566666666678899999999999999998887752 4579999999999999999887765
Q ss_pred CceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCc
Q 010709 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQ 302 (503)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q 302 (503)
+..+...+|+.. ...+++|+|+||++|+ ....+.+.++++||||||| +++.+|...+..++..++...+
T Consensus 282 g~~vg~~vG~~~-------~~~~~~IlV~TPGrLl---~~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~~~ 350 (666)
T 3o8b_A 282 GIDPNIRTGVRT-------ITTGAPVTYSTYGKFL---ADGGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETAGA 350 (666)
T ss_dssp SCCCEEECSSCE-------ECCCCSEEEEEHHHHH---HTTSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTTTC
T ss_pred CCCeeEEECcEe-------ccCCCCEEEECcHHHH---hCCCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhcCC
Confidence 344566677653 3567999999999984 5556778899999999997 4566788888889998887666
Q ss_pred --EEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEE
Q 010709 303 --TLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVF 380 (503)
Q Consensus 303 --~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF 380 (503)
+++||||++..+. ...+....+..... ..+ .. ....... .....+++|||
T Consensus 351 ~llil~SAT~~~~i~------~~~p~i~~v~~~~~--~~i-~~---~~~~~~l----------------~~~~~~~vLVF 402 (666)
T 3o8b_A 351 RLVVLATATPPGSVT------VPHPNIEEVALSNT--GEI-PF---YGKAIPI----------------EAIRGGRHLIF 402 (666)
T ss_dssp SEEEEEESSCTTCCC------CCCTTEEEEECBSC--SSE-EE---TTEEECG----------------GGSSSSEEEEE
T ss_pred ceEEEECCCCCcccc------cCCcceEEEeeccc--chh-HH---HHhhhhh----------------hhccCCcEEEE
Confidence 7888999987321 11111111110000 000 00 0000000 01245679999
Q ss_pred EcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEE----------Ecc
Q 010709 381 VERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVV----------NLD 450 (503)
Q Consensus 381 ~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI----------~~~ 450 (503)
|++++.++.+++.|++.++.+..+||++++++ |.++..+|||||+++++|||+| +++|| |||
T Consensus 403 v~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyD 474 (666)
T 3o8b_A 403 CHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFS 474 (666)
T ss_dssp CSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECC
T ss_pred eCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccc
Confidence 99999999999999999999999999999875 4567779999999999999997 99999 667
Q ss_pred -----------CCCChhHHHHhhCccee
Q 010709 451 -----------LPKVLLAASESLCTTSF 467 (503)
Q Consensus 451 -----------~p~s~~~~~Qr~GR~gR 467 (503)
.|.+.++|+||+||+||
T Consensus 475 ydP~~gl~~~~~P~s~~syiQRiGRtGR 502 (666)
T 3o8b_A 475 LDPTFTIETTTVPQDAVSRSQRRGRTGR 502 (666)
T ss_dssp CSSSCEEEEEEEECBHHHHHHHHTTBCS
T ss_pred cccccccccccCcCCHHHHHHHhccCCC
Confidence 89999999999999999
No 47
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.2e-38 Score=326.21 Aligned_cols=281 Identities=19% Similarity=0.177 Sum_probs=209.8
Q ss_pred CCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccC
Q 010709 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (503)
Q Consensus 142 ~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~ 221 (503)
..|+++|.++++.+++++++++++|||+|||++|+.++... ++++||++|+++|+.||.++++++
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-----------~~~~Lvl~P~~~L~~Q~~~~~~~~---- 156 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF---- 156 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-----------CSCEEEEESSHHHHHHHHHHGGGG----
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEECCHHHHHHHHHHHHhC----
Confidence 47999999999999999999999999999999998877654 467999999999999999999884
Q ss_pred CCce-EEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhCCCC
Q 010709 222 DSFK-TAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDK 300 (503)
Q Consensus 222 ~~~~-~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~ 300 (503)
++. +..+.|+.. ...+|+|+|++.+...+.. ...++++|||||||++.+..+.. ++..++ .
T Consensus 157 -~~~~v~~~~g~~~---------~~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~~~~~~~----~~~~~~-~ 218 (472)
T 2fwr_A 157 -GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYVQ----IAQMSI-A 218 (472)
T ss_dssp -CGGGEEEBSSSCB---------CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTTSTTTHH----HHHTCC-C
T ss_pred -CCcceEEECCCcC---------CcCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCCChHHHH----HHHhcC-C
Confidence 366 777777653 3479999999999876642 12468999999999998776653 555554 5
Q ss_pred CcEEEEEeeCCHH-------------------HHHHHHHhcCCCeEE--EeCCCCC------------------------
Q 010709 301 HQTLLFSATMPVE-------------------IEALAQEYLTDPVQV--KVGKVSS------------------------ 335 (503)
Q Consensus 301 ~q~i~~SAT~~~~-------------------~~~~~~~~~~~~~~~--~~~~~~~------------------------ 335 (503)
.+++++|||+... ...+...++..+... .+.....
T Consensus 219 ~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 298 (472)
T 2fwr_A 219 PFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLR 298 (472)
T ss_dssp SEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTT
T ss_pred CeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 6799999999631 222222222222111 0000000
Q ss_pred CCCceEEEE---------------------EEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHH
Q 010709 336 PTANVIQIL---------------------EKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEAL 394 (503)
Q Consensus 336 ~~~~~~~~~---------------------~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L 394 (503)
....+...+ ..+....|...+..++.. ....++||||++++.++.+++.|
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~---------~~~~k~lvF~~~~~~~~~l~~~l 369 (472)
T 2fwr_A 299 RAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER---------HRKDKIIIFTRHNELVYRISKVF 369 (472)
T ss_dssp CCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH---------TSSSCBCCBCSCHHHHHHHHHHT
T ss_pred chhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh---------CCCCcEEEEECCHHHHHHHHHHh
Confidence 000000000 001122344444444433 24567999999999999999987
Q ss_pred HHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCcceeee
Q 010709 395 VAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFNI 469 (503)
Q Consensus 395 ~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~~ 469 (503)
. +..+||++++.+|.++++.|++|+.+|||||+++++|+|+|++++||++++|++...|.||+||+||.-
T Consensus 370 ~-----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g 439 (472)
T 2fwr_A 370 L-----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPS 439 (472)
T ss_dssp T-----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCC
T ss_pred C-----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCC
Confidence 4 557899999999999999999999999999999999999999999999999999999999999999964
No 48
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=7.6e-37 Score=281.72 Aligned_cols=215 Identities=39% Similarity=0.603 Sum_probs=186.7
Q ss_pred CCCCCCCcCCccc-CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCC-CC
Q 010709 113 SVPAPAPIESFTD-MCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTP-VG 190 (503)
Q Consensus 113 ~~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~-~~ 190 (503)
....|.+..+|++ +++++.+.+.+...||..|+++|.++++.+++|+++++++|||+|||++|++|++..+..... ..
T Consensus 11 ~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~ 90 (228)
T 3iuy_A 11 KRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISRE 90 (228)
T ss_dssp CCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-------
T ss_pred cCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhh
Confidence 3477889999999 799999999999999999999999999999999999999999999999999999987654321 11
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCc
Q 010709 191 RGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRV 270 (503)
Q Consensus 191 ~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~ 270 (503)
...++++||++|+++|+.|+++.++++.. .++.+..++|+.........+..+++|+|+||+++.+.+.+....+.++
T Consensus 91 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 91 QRNGPGMLVLTPTRELALHVEAECSKYSY--KGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp --CCCSEEEECSSHHHHHHHHHHHHHHCC--TTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred ccCCCcEEEEeCCHHHHHHHHHHHHHhcc--cCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 23578899999999999999999999863 3578889999988887777788889999999999999998888889999
Q ss_pred cEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEE
Q 010709 271 SFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVK 329 (503)
Q Consensus 271 ~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~ 329 (503)
++||+||||++.+++|...+..++..++++.|+++||||+++.+..++..++.+|..+.
T Consensus 169 ~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 169 TYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp CEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred eEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 99999999999999999999999999999999999999999999999999999998775
No 49
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=1.4e-36 Score=284.43 Aligned_cols=224 Identities=45% Similarity=0.743 Sum_probs=190.8
Q ss_pred CCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCC----CCCC
Q 010709 118 APIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPV----GRGD 193 (503)
Q Consensus 118 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~----~~~~ 193 (503)
.++.+|+++++++.+.+.|...|+..|+++|.++++.+++|+++++++|||+|||++|++|++..+...... ....
T Consensus 20 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~ 99 (253)
T 1wrb_A 20 NVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTA 99 (253)
T ss_dssp SCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCB
T ss_pred CccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccC
Confidence 378889999999999999999999999999999999999999999999999999999999999887654311 1234
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEE
Q 010709 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFV 273 (503)
Q Consensus 194 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~v 273 (503)
++++||++|+++|+.|+++.+++++... ++.+..++|+.........+..+++|+|+||++|.+.+.+....+.++++|
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~l 178 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNT-PLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYI 178 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEE
Confidence 5789999999999999999999998654 578888999998888777788889999999999999999887888999999
Q ss_pred EecchhHHhhCCCHHHHHHHHHhC--CC--CCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEE
Q 010709 274 ILDEADRMLDMGFEPQIREVMQNL--PD--KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQ 342 (503)
Q Consensus 274 ViDEaH~l~~~~~~~~~~~il~~~--~~--~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (503)
|+||||++.+++|...+..++..+ +. +.|+++||||+++++..+++.++.+|..+.++.......++.|
T Consensus 179 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~q 251 (253)
T 1wrb_A 179 VLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQ 251 (253)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC-----------
T ss_pred EEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCcCCcee
Confidence 999999999999999999999853 43 6799999999999999999999999999988766554444444
No 50
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=5.7e-37 Score=322.09 Aligned_cols=308 Identities=18% Similarity=0.165 Sum_probs=191.9
Q ss_pred CCCcHHHHHHHHHHhc----C-CCeEEEccCCCchhHHhHHHHHHHHHhcC--CCCCCCCCeEEEEcccHHHHHHHH-HH
Q 010709 142 TRPTSIQAQAMPVALS----G-RDLLGCAETGSGKTAAFTIPMIQHCVAQT--PVGRGDGPLALVLAPTRELAQQIE-KE 213 (503)
Q Consensus 142 ~~~~~~Q~~~i~~i~~----~-~~vii~~~TGsGKTl~~~lp~l~~~~~~~--~~~~~~~~~~lil~Ptr~La~q~~-~~ 213 (503)
..|+++|.++++.+++ + ++++++++||+|||+++ ++++..+.... ......++++|||+|+++|+.|+. +.
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~-~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVA-FQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHH-HHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHH-HHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 3799999999999875 4 55999999999999996 44555544432 111124688999999999999999 77
Q ss_pred HHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHc----CCCCCCCccEEEecchhHHhhCCCHHH
Q 010709 214 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ----GNTSLSRVSFVILDEADRMLDMGFEPQ 289 (503)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~----~~~~l~~~~~vViDEaH~l~~~~~~~~ 289 (503)
++.++. .+..+.++ ....+.+|+|+|+++|...... ..+....+++|||||||++...+ ...
T Consensus 256 ~~~~~~-----~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~ 321 (590)
T 3h1t_A 256 FTPFGD-----ARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSN 321 (590)
T ss_dssp CTTTCS-----SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------
T ss_pred HHhcch-----hhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHH
Confidence 776542 22333222 1345689999999999877642 23456779999999999987542 355
Q ss_pred HHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEE-----------------eCCCCCCCC--------------
Q 010709 290 IREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVK-----------------VGKVSSPTA-------------- 338 (503)
Q Consensus 290 ~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~-------------- 338 (503)
+..++..++. .++++||||+..........+++.+.... .........
T Consensus 322 ~~~il~~~~~-~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (590)
T 3h1t_A 322 WREILEYFEP-AFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGR 400 (590)
T ss_dssp CHHHHHHSTT-SEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC---------------
T ss_pred HHHHHHhCCc-ceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccc
Confidence 6778888764 57999999997544333344444332211 000000000
Q ss_pred ceEEEEEEcCh-------hhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCC--------eEEE
Q 010709 339 NVIQILEKVSE-------NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGL--------HAVA 403 (503)
Q Consensus 339 ~~~~~~~~~~~-------~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~--------~v~~ 403 (503)
.+......... ..+...+...+...... ..+.+++||||+++..|+.+++.|.+.+. .+..
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~----~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~ 476 (590)
T 3h1t_A 401 EIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKR----TDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVAR 476 (590)
T ss_dssp --------CCSHHHHHHHHHTHHHHHHHHHHHHHH----HCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEE
T ss_pred ccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHh----cCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEE
Confidence 00000000000 11222222223222111 14557899999999999999999987643 2778
Q ss_pred EcCCCCHHHHHHHHHHHhcCCCc---EEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCcceeeee
Q 010709 404 LHGGRNQSDRESALRDFRNGSTN---ILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFNIT 470 (503)
Q Consensus 404 lh~~~~~~~r~~~~~~f~~g~~~---vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~~~ 470 (503)
+||.+++ +|.++++.|++|+.+ |||||+++++|+|+|++++||++++|++...|+||+||+||..-
T Consensus 477 i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 477 VTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp CSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred EeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 8998764 799999999998866 89999999999999999999999999999999999999999653
No 51
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=1.9e-38 Score=332.37 Aligned_cols=280 Identities=16% Similarity=0.228 Sum_probs=197.2
Q ss_pred HHHCCCC-----CCcHHHH-----HHHHHHh------cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEE
Q 010709 136 IEFHEYT-----RPTSIQA-----QAMPVAL------SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (503)
Q Consensus 136 l~~~~~~-----~~~~~Q~-----~~i~~i~------~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~li 199 (503)
+...||. .|+++|. ++++.++ .++++++++|||+|||++|++|++..+... ++++||
T Consensus 203 l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~-------~~~~li 275 (673)
T 2wv9_A 203 LYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK-------RLRTAV 275 (673)
T ss_dssp EEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT-------TCCEEE
T ss_pred eeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC-------CCcEEE
Confidence 3445555 8999999 9999888 899999999999999999999999876653 578999
Q ss_pred EcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchh
Q 010709 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD 279 (503)
Q Consensus 200 l~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH 279 (503)
++||++||.|+++.++.+. +. .. .+. .. .....+.-+-+++.+.+.+.+.. ...+.++++|||||||
T Consensus 276 laPTr~La~Q~~~~l~~~~-----i~--~~-~~~-l~---~v~tp~~ll~~l~~~~l~~~l~~-~~~l~~l~lvViDEaH 342 (673)
T 2wv9_A 276 LAPTRVVAAEMAEALRGLP-----VR--YL-TPA-VQ---REHSGNEIVDVMCHATLTHRLMS-PLRVPNYNLFVMDEAH 342 (673)
T ss_dssp EESSHHHHHHHHHHTTTSC-----CE--EC-CC-------CCCCSCCCEEEEEHHHHHHHHHS-SSCCCCCSEEEEESTT
T ss_pred EccHHHHHHHHHHHHhcCC-----ee--ee-ccc-cc---ccCCHHHHHHHHHhhhhHHHHhc-ccccccceEEEEeCCc
Confidence 9999999999998887542 21 10 110 00 00112233455566666555554 3568899999999999
Q ss_pred HHhhCCCHHHHHHHHHhC-CCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHH
Q 010709 280 RMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLA 358 (503)
Q Consensus 280 ~l~~~~~~~~~~~il~~~-~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 358 (503)
++ +..+...+..+...+ ++..|+++||||++..+..+... ..|...... ..+.. +...++.
T Consensus 343 ~~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i~~v~~--------------~~~~~-~~~~~l~ 404 (673)
T 2wv9_A 343 FT-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPVHDVSS--------------EIPDR-AWSSGFE 404 (673)
T ss_dssp CC-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCEEEEEC--------------CCCSS-CCSSCCH
T ss_pred cc-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCceEEEee--------------ecCHH-HHHHHHH
Confidence 87 111122222232222 26789999999998654322111 111111110 01111 1111112
Q ss_pred HHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCC
Q 010709 359 LLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGL 438 (503)
Q Consensus 359 ~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gl 438 (503)
.+.+ ..+++||||++++.++.+++.|+..++.+..+||+ +|.++++.|++|+.+|||||+++++||
T Consensus 405 ~l~~----------~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GI 470 (673)
T 2wv9_A 405 WITD----------YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGA 470 (673)
T ss_dssp HHHS----------CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTC
T ss_pred HHHh----------CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcce
Confidence 2211 24579999999999999999999999999999994 789999999999999999999999999
Q ss_pred CCCCCCEEEE--------------------ccCCCChhHHHHhhCcceee
Q 010709 439 DVMGVAHVVN--------------------LDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 439 dip~v~~VI~--------------------~~~p~s~~~~~Qr~GR~gR~ 468 (503)
|+| +++||+ |++|.+.++|+||+||+||.
T Consensus 471 Dip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~ 519 (673)
T 2wv9_A 471 NFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRN 519 (673)
T ss_dssp CCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCC
T ss_pred eeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCC
Confidence 999 999998 56899999999999999996
No 52
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=8.7e-36 Score=270.25 Aligned_cols=203 Identities=34% Similarity=0.640 Sum_probs=186.3
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEE
Q 010709 121 ESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (503)
Q Consensus 121 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil 200 (503)
.+|+++++++.+++.+..+|+..|+++|.++++.+++++++++++|||+|||++|++|++..+... ..++++||+
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~~~~~lil 77 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK-----KDNIQAMVI 77 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT-----SCSCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc-----CCCeeEEEE
Confidence 469999999999999999999999999999999999999999999999999999999999875432 235789999
Q ss_pred cccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhH
Q 010709 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 280 (503)
Q Consensus 201 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~ 280 (503)
+|+++|+.|+++.++++.....+..+..++|+....+....+..+++|+|+||+++.+.+.+....+.++++||+||||+
T Consensus 78 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~ 157 (206)
T 1vec_A 78 VPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 157 (206)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH
T ss_pred eCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHH
Confidence 99999999999999999877656889999999988887777778899999999999999988777889999999999999
Q ss_pred HhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEE
Q 010709 281 MLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQV 328 (503)
Q Consensus 281 l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~ 328 (503)
+.+.+|...+..++..++++.|+++||||+++.+..+++.++.+|..+
T Consensus 158 ~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 158 LLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred hHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 999999999999999999899999999999999999999999999765
No 53
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=1.3e-39 Score=328.05 Aligned_cols=253 Identities=17% Similarity=0.206 Sum_probs=173.1
Q ss_pred HHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCc
Q 010709 154 VALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGT 233 (503)
Q Consensus 154 ~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~ 233 (503)
++++|+++++++|||||||++|++|++..+... +++++|++||++||.|+++.++.+. +....+..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~-------~~~~lil~Ptr~La~Q~~~~l~~~~-------v~~~~~~~ 69 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR-------RLRTLVLAPTRVVLSEMKEAFHGLD-------VKFHTQAF 69 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTTTSC-------EEEESSCC
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc-------CCeEEEEcchHHHHHHHHHHHhcCC-------eEEecccc
Confidence 356889999999999999999999999876653 5789999999999999998887432 22111110
Q ss_pred cHHHHHHHhhCCCcEEEECcHHHH---------HHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhC-CCCCcE
Q 010709 234 NIAEQRSELRGGVSIVVATPGRFL---------DHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQT 303 (503)
Q Consensus 234 ~~~~~~~~~~~~~~Ilv~Tp~~l~---------~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~-~~~~q~ 303 (503)
. .++||+++. ..+. ....+.++++|||||||++ +.++...+..+.... +++.|+
T Consensus 70 ~--------------~v~Tp~~l~~~l~~~~l~~~~~-~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~ 133 (440)
T 1yks_A 70 S--------------AHGSGREVIDAMCHATLTYRML-EPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESAT 133 (440)
T ss_dssp C--------------CCCCSSCCEEEEEHHHHHHHHT-SSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEE
T ss_pred e--------------eccCCccceeeecccchhHhhh-CcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceE
Confidence 0 255655443 2222 2345889999999999987 222222222222222 357899
Q ss_pred EEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcc
Q 010709 304 LLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVER 383 (503)
Q Consensus 304 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~ 383 (503)
++||||+++.+..+... ..+.... ...++... ...++..+.+ ..+++||||++
T Consensus 134 l~~SAT~~~~~~~~~~~--~~~~~~~--------------~~~~~~~~-~~~~~~~l~~----------~~~~~lVF~~s 186 (440)
T 1yks_A 134 ILMTATPPGTSDEFPHS--NGEIEDV--------------QTDIPSEP-WNTGHDWILA----------DKRPTAWFLPS 186 (440)
T ss_dssp EEECSSCTTCCCSSCCC--SSCEEEE--------------ECCCCSSC-CSSSCHHHHH----------CCSCEEEECSC
T ss_pred EEEeCCCCchhhhhhhc--CCCeeEe--------------eeccChHH-HHHHHHHHHh----------cCCCEEEEeCC
Confidence 99999997764322211 1111111 01111111 1111222221 13579999999
Q ss_pred hhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEE---------------
Q 010709 384 KTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN--------------- 448 (503)
Q Consensus 384 ~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~--------------- 448 (503)
++.++.+++.|+..++.+..+|| ++|.++++.|++|+.+|||||+++++|||+| +++||+
T Consensus 187 ~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~ 261 (440)
T 1yks_A 187 IRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRK 261 (440)
T ss_dssp HHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTE
T ss_pred HHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccc
Confidence 99999999999999999999999 4688999999999999999999999999999 999996
Q ss_pred ----ccCCCChhHHHHhhCcceee
Q 010709 449 ----LDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 449 ----~~~p~s~~~~~Qr~GR~gR~ 468 (503)
++.|.+.++|.||+||+||.
T Consensus 262 ~vi~~~~p~~~~~~~Qr~GR~GR~ 285 (440)
T 1yks_A 262 VAIKGPLRISASSAAQRRGRIGRN 285 (440)
T ss_dssp EEEEEEEECCHHHHHHHHTTSSCC
T ss_pred eeeccccccCHHHHHHhccccCCC
Confidence 88899999999999999995
No 54
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=3.2e-38 Score=319.85 Aligned_cols=260 Identities=17% Similarity=0.229 Sum_probs=185.4
Q ss_pred HHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEEC
Q 010709 152 MPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVG 231 (503)
Q Consensus 152 i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~ 231 (503)
...+..++++++++|||+|||++|++|++..+... ++++||++|||+|+.|+++.++. ..+....+
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~-------~~~~lvl~Ptr~La~Q~~~~l~g-------~~v~~~~~ 80 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ-------RLRTAVLAPTRVVAAEMAEALRG-------LPVRYQTS 80 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT-------TCCEEEEECSHHHHHHHHHHTTT-------SCEEECC-
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC-------CCcEEEECchHHHHHHHHHHhcC-------ceEeEEec
Confidence 34456788899999999999999999999887653 57899999999999999988862 22221111
Q ss_pred CccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhH-----HhhCCCHHHHHHHHHhCCCCCcEEEE
Q 010709 232 GTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR-----MLDMGFEPQIREVMQNLPDKHQTLLF 306 (503)
Q Consensus 232 ~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~-----l~~~~~~~~~~~il~~~~~~~q~i~~ 306 (503)
.... ....+..+.++|.+.+.+.+.. ...+.++++|||||||+ +...++.... . ..++.|+++|
T Consensus 81 ~~~~-----~~t~~~~i~~~~~~~l~~~l~~-~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~---~--~~~~~~~il~ 149 (459)
T 2z83_A 81 AVQR-----EHQGNEIVDVMCHATLTHRLMS-PNRVPNYNLFVMDEAHFTDPASIAARGYIATK---V--ELGEAAAIFM 149 (459)
T ss_dssp ------------CCCSEEEEEHHHHHHHHHS-CC-CCCCSEEEESSTTCCSHHHHHHHHHHHHH---H--HTTSCEEEEE
T ss_pred cccc-----CCCCCcEEEEEchHHHHHHhhc-cccccCCcEEEEECCccCCchhhHHHHHHHHH---h--ccCCccEEEE
Confidence 1100 0123456788999998877765 35688999999999997 4433332221 1 1367899999
Q ss_pred EeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhh
Q 010709 307 SATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTR 386 (503)
Q Consensus 307 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~ 386 (503)
|||++..+..+... ..|........ +. .+...++..+.+ ..+++||||++++.
T Consensus 150 SAT~~~~~~~~~~~--~~pi~~~~~~~--------------~~-~~~~~~~~~l~~----------~~~~~LVF~~s~~~ 202 (459)
T 2z83_A 150 TATPPGTTDPFPDS--NAPIHDLQDEI--------------PD-RAWSSGYEWITE----------YAGKTVWFVASVKM 202 (459)
T ss_dssp CSSCTTCCCSSCCC--SSCEEEEECCC--------------CS-SCCSSCCHHHHH----------CCSCEEEECSCHHH
T ss_pred EcCCCcchhhhccC--CCCeEEecccC--------------Cc-chhHHHHHHHHh----------cCCCEEEEeCChHH
Confidence 99998654322111 22332211100 00 000011112211 14579999999999
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEE------------------
Q 010709 387 CDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN------------------ 448 (503)
Q Consensus 387 ~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~------------------ 448 (503)
|+.+++.|+..++.+..+|+. +|.++++.|++|+.+|||||+++++|+|+|+ ++||+
T Consensus 203 ~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~ 277 (459)
T 2z83_A 203 GNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVI 277 (459)
T ss_dssp HHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEE
T ss_pred HHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccc
Confidence 999999999999999999995 6788999999999999999999999999999 99999
Q ss_pred --ccCCCChhHHHHhhCcceee
Q 010709 449 --LDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 449 --~~~p~s~~~~~Qr~GR~gR~ 468 (503)
|+.|.+..+|+||+||+||.
T Consensus 278 ~~~d~p~s~~~~~QR~GRaGR~ 299 (459)
T 2z83_A 278 LGNPSPITSASAAQRRGRVGRN 299 (459)
T ss_dssp ECSCEECCHHHHHHHHTTSSCC
T ss_pred cccCCCCCHHHHHHhccccCCC
Confidence 67999999999999999995
No 55
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=5.5e-36 Score=276.13 Aligned_cols=210 Identities=29% Similarity=0.512 Sum_probs=184.7
Q ss_pred CCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCC
Q 010709 115 PAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDG 194 (503)
Q Consensus 115 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~ 194 (503)
..|.+..+|+++++++.+.+.+..+||..|+++|.++++.+++|+++++++|||+|||++|++|++..+... ..+
T Consensus 18 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~-----~~~ 92 (230)
T 2oxc_A 18 VLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE-----NLS 92 (230)
T ss_dssp ------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----SCS
T ss_pred CCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----CCC
Confidence 455667789999999999999999999999999999999999999999999999999999999999876542 235
Q ss_pred CeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEE
Q 010709 195 PLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVI 274 (503)
Q Consensus 195 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vV 274 (503)
+++||++|+++|+.|+++.+++++....++.+..+.|+.........+ .+++|+|+||++|.+.+....+.+.++++||
T Consensus 93 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lV 171 (230)
T 2oxc_A 93 TQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRLFI 171 (230)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCEEE
Confidence 789999999999999999999998765568899999998877665554 4699999999999999988777888999999
Q ss_pred ecchhHHhhCC-CHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEe
Q 010709 275 LDEADRMLDMG-FEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKV 330 (503)
Q Consensus 275 iDEaH~l~~~~-~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 330 (503)
+||||++.+++ |...+..++..+++..|++++|||+++.+..++..++.+|..+.+
T Consensus 172 iDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 172 LDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp ESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred eCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 99999999987 999999999999989999999999999999999999999987753
No 56
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=1.2e-35 Score=276.63 Aligned_cols=208 Identities=38% Similarity=0.683 Sum_probs=189.1
Q ss_pred CCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeE
Q 010709 118 APIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLA 197 (503)
Q Consensus 118 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~ 197 (503)
.+..+|+++++++.+.+.+..+|+..|+++|.++++.+++|+++++++|||+|||++|++|++..+.... .++++
T Consensus 40 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~-----~~~~~ 114 (249)
T 3ber_A 40 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP-----QRLFA 114 (249)
T ss_dssp HHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC-----CSSCE
T ss_pred cccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC-----CCceE
Confidence 3456799999999999999999999999999999999999999999999999999999999998876642 35789
Q ss_pred EEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHc-CCCCCCCccEEEec
Q 010709 198 LVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ-GNTSLSRVSFVILD 276 (503)
Q Consensus 198 lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~-~~~~l~~~~~vViD 276 (503)
||++|+++|+.|+++.+++++... ++.+..++|+.....+...+..+++|+|+||++|.+.+.+ ..+.+.++++||+|
T Consensus 115 lil~Ptr~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViD 193 (249)
T 3ber_A 115 LVLTPTRELAFQISEQFEALGSSI-GVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMD 193 (249)
T ss_dssp EEECSSHHHHHHHHHHHHHHHGGG-TCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEEC
T ss_pred EEEeCCHHHHHHHHHHHHHHhccC-CeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEc
Confidence 999999999999999999998665 4788999999988877777788899999999999998876 45678899999999
Q ss_pred chhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeC
Q 010709 277 EADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVG 331 (503)
Q Consensus 277 EaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 331 (503)
|||++.+++|...+..++..++++.|+++||||+++.+..+++.++.+|..+.+.
T Consensus 194 Eah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 194 EADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp SHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred ChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999999999999999999999999999999999887653
No 57
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=4.5e-36 Score=274.67 Aligned_cols=208 Identities=31% Similarity=0.548 Sum_probs=185.4
Q ss_pred cCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEE
Q 010709 120 IESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (503)
Q Consensus 120 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~li 199 (503)
..+|+++++++.+.+.+..+|+..|+++|.++++.+++|+++++++|||+|||++|++|++..+... ..++++||
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~-----~~~~~~li 77 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE-----RAEVQAVI 77 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT-----SCSCCEEE
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC-----cCCceEEE
Confidence 4579999999999999999999999999999999999999999999999999999999999876532 23578999
Q ss_pred EcccHHHHHHHHHHHHHHhccCC---CceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEec
Q 010709 200 LAPTRELAQQIEKEVKALSRSLD---SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILD 276 (503)
Q Consensus 200 l~Ptr~La~q~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViD 276 (503)
++|+++|+.|+++.++++..... ++.+..++|+.........+..+++|+|+||+++.+.+.+....+.++++||+|
T Consensus 78 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViD 157 (219)
T 1q0u_A 78 TAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVD 157 (219)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEEC
T ss_pred EcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEc
Confidence 99999999999999999986542 477888888887766555555678999999999999998877788999999999
Q ss_pred chhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCC
Q 010709 277 EADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGK 332 (503)
Q Consensus 277 EaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 332 (503)
|||++.+++|...+..++..++++.|++++|||+++++.++++.++.+|..+.+..
T Consensus 158 Eah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 158 EADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp SHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred CchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 99999999999999999999998999999999999999999999999998886553
No 58
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=5.6e-37 Score=308.27 Aligned_cols=259 Identities=16% Similarity=0.180 Sum_probs=185.1
Q ss_pred cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHH
Q 010709 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA 236 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (503)
+|+++++++|||+|||++|++|++..+... +++++|++||++|+.|+++.++ ++.+....++...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~-------g~~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~~~~- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK-------RLRTVILAPTRVVASEMYEALR-------GEPIRYMTPAVQS- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTT-------TSCEEEC-------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC-------CCCEEEECcHHHHHHHHHHHhC-------CCeEEEEecCccc-
Confidence 378899999999999999999999776553 5789999999999999987775 2344444333211
Q ss_pred HHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhC-CCCCcEEEEEeeCCHHHH
Q 010709 237 EQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEIE 315 (503)
Q Consensus 237 ~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~-~~~~q~i~~SAT~~~~~~ 315 (503)
....+..+.++|.+.+.+.+.. ...+.++++|||||+|++ +.++......+.... +++.|+++||||+++.+.
T Consensus 66 ----~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~ 139 (431)
T 2v6i_A 66 ----ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTE 139 (431)
T ss_dssp -------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCC
T ss_pred ----cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchh
Confidence 1223456778899988777766 566889999999999986 332333333333332 567899999999986432
Q ss_pred HHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHH
Q 010709 316 ALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALV 395 (503)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~ 395 (503)
.+... ..|... .. ...+ ..+...++..+.+ ..+++||||++++.++.+++.|+
T Consensus 140 ~~~~~--~~~i~~-~~-------------~~~~-~~~~~~~~~~l~~----------~~~~~lVF~~~~~~~~~l~~~L~ 192 (431)
T 2v6i_A 140 AFPPS--NSPIID-EE-------------TRIP-DKAWNSGYEWITE----------FDGRTVWFVHSIKQGAEIGTCLQ 192 (431)
T ss_dssp SSCCC--SSCCEE-EE-------------CCCC-SSCCSSCCHHHHS----------CSSCEEEECSSHHHHHHHHHHHH
T ss_pred hhcCC--CCceee-cc-------------ccCC-HHHHHHHHHHHHc----------CCCCEEEEeCCHHHHHHHHHHHH
Confidence 21110 111111 10 0011 0111112222211 24579999999999999999999
Q ss_pred HCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCE-----------------EEEccCCCChhHH
Q 010709 396 AEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAH-----------------VVNLDLPKVLLAA 458 (503)
Q Consensus 396 ~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~-----------------VI~~~~p~s~~~~ 458 (503)
+.++.+..+||+ +|.++++.|++|+.+|||||+++++|+|+| +.+ ||+++.|.+..+|
T Consensus 193 ~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~ 267 (431)
T 2v6i_A 193 KAGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASA 267 (431)
T ss_dssp HTTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHH
T ss_pred HcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHH
Confidence 999999999997 578899999999999999999999999999 766 5778889999999
Q ss_pred HHhhCcceee
Q 010709 459 SESLCTTSFN 468 (503)
Q Consensus 459 ~Qr~GR~gR~ 468 (503)
.||+||+||.
T Consensus 268 ~Qr~GR~GR~ 277 (431)
T 2v6i_A 268 AQRRGRIGRN 277 (431)
T ss_dssp HHHHTTSSCC
T ss_pred HHhhhccCCC
Confidence 9999999995
No 59
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=7.5e-36 Score=285.37 Aligned_cols=207 Identities=30% Similarity=0.494 Sum_probs=184.2
Q ss_pred CCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCC
Q 010709 117 PAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDG 194 (503)
Q Consensus 117 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~--~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~ 194 (503)
.....+|+++++++.+++.|..+||..|+++|.++|+.++.| +|+++++|||+|||++|++|++..+... ..+
T Consensus 88 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~-----~~~ 162 (300)
T 3fmo_B 88 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NKY 162 (300)
T ss_dssp CCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT-----SCS
T ss_pred cCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc-----CCC
Confidence 345788999999999999999999999999999999999987 8999999999999999999999886543 346
Q ss_pred CeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHc-CCCCCCCccEE
Q 010709 195 PLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ-GNTSLSRVSFV 273 (503)
Q Consensus 195 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~-~~~~l~~~~~v 273 (503)
+++||++|||+||.|+++.++.++....++.+....|+...... ...+++|+|+||++|.+++.+ ..+.+.++++|
T Consensus 163 ~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~l 239 (300)
T 3fmo_B 163 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 239 (300)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEE
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh---hcCCCCEEEECHHHHHHHHHhcCCCChhhceEE
Confidence 78999999999999999999999877667888888887754332 245689999999999999976 45678999999
Q ss_pred EecchhHHhh-CCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeC
Q 010709 274 ILDEADRMLD-MGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVG 331 (503)
Q Consensus 274 ViDEaH~l~~-~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 331 (503)
||||||++++ .+|...+..++..+++.+|+++||||+++.+..+++.++.+|..+.+.
T Consensus 240 VlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 240 VLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp EETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred EEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 9999999998 689999999999999999999999999999999999999999988764
No 60
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=4.3e-35 Score=271.46 Aligned_cols=212 Identities=36% Similarity=0.606 Sum_probs=185.9
Q ss_pred CCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCe
Q 010709 117 PAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPL 196 (503)
Q Consensus 117 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~ 196 (503)
+.+..+|+++++++.+.+.|..+|+..|+++|.++++.+++|+++++++|||+|||++|++|++..+..... ....+++
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~-~~~~~~~ 99 (236)
T 2pl3_A 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW-TSTDGLG 99 (236)
T ss_dssp GGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC-CGGGCCC
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc-cccCCce
Confidence 456778999999999999999999999999999999999999999999999999999999999988765321 1224678
Q ss_pred EEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcC-CCCCCCccEEEe
Q 010709 197 ALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG-NTSLSRVSFVIL 275 (503)
Q Consensus 197 ~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~~l~~~~~vVi 275 (503)
+||++|+++|+.|+++.+++++... ++.+..++|+.........+ .+++|+|+||++|.+.+.+. .+.+.++++||+
T Consensus 100 ~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 177 (236)
T 2pl3_A 100 VLIISPTRELAYQTFEVLRKVGKNH-DFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVL 177 (236)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTS-SCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHhCCC-CeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEE
Confidence 9999999999999999999998654 47888889988776655555 57999999999999988764 466789999999
Q ss_pred cchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeC
Q 010709 276 DEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVG 331 (503)
Q Consensus 276 DEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 331 (503)
||||++.+++|...+..++..+++..|+++||||+++.+..+++.++.+|..+.+.
T Consensus 178 DEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 178 DEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp TTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred eChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 99999999999999999999999999999999999999999999999999888654
No 61
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=7.7e-36 Score=276.37 Aligned_cols=211 Identities=36% Similarity=0.579 Sum_probs=177.4
Q ss_pred CCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCC
Q 010709 115 PAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDG 194 (503)
Q Consensus 115 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~ 194 (503)
..+.+..+|+++++++.+.+.+..+||..|+++|.++++.+++|+++++++|||+|||++|++|++..+... ..+
T Consensus 24 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~-----~~~ 98 (237)
T 3bor_A 24 NWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE-----FKE 98 (237)
T ss_dssp ---CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----SCS
T ss_pred CCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----CCC
Confidence 455677889999999999999999999999999999999999999999999999999999999999876432 235
Q ss_pred CeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCC-CcEEEECcHHHHHHHHcCCCCCCCccEE
Q 010709 195 PLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGG-VSIVVATPGRFLDHLQQGNTSLSRVSFV 273 (503)
Q Consensus 195 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Ilv~Tp~~l~~~l~~~~~~l~~~~~v 273 (503)
+++||++|+++|+.|+++.+++++... ++.+..++|+.........+..+ ++|+|+||++|.+.+.+....+.++++|
T Consensus 99 ~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~l 177 (237)
T 3bor_A 99 TQALVLAPTRELAQQIQKVILALGDYM-GATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMF 177 (237)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEE
T ss_pred ceEEEEECcHHHHHHHHHHHHHHhhhc-CceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEE
Confidence 789999999999999999999998654 47788888888766665555544 8999999999999998877788899999
Q ss_pred EecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeC
Q 010709 274 ILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVG 331 (503)
Q Consensus 274 ViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 331 (503)
|+||||++.+++|...+..++..+++..|++++|||+++++..+++.++.+|..+.+.
T Consensus 178 ViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 178 VLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp EEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred EECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999999999999999999999999999999999999887543
No 62
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=5e-35 Score=265.45 Aligned_cols=204 Identities=47% Similarity=0.734 Sum_probs=184.7
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 010709 122 SFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (503)
Q Consensus 122 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~ 201 (503)
+|+++++++.+.+.+...|+..|+++|.++++.+++++++++++|||+|||++|++|++..+.... ....++++||++
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~--~~~~~~~~lil~ 79 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ--ERGRKPRALVLT 79 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC--CTTCCCSEEEEC
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc--ccCCCCcEEEEE
Confidence 589999999999999999999999999999999999999999999999999999999998865422 123468899999
Q ss_pred ccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHH
Q 010709 202 PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRM 281 (503)
Q Consensus 202 Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l 281 (503)
|+++|+.|+++.++++... +.+..++|+.........+..+++|+|+||+++.+.+.+....+.++++||+||||++
T Consensus 80 P~~~L~~q~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~ 156 (207)
T 2gxq_A 80 PTRELALQVASELTAVAPH---LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEM 156 (207)
T ss_dssp SSHHHHHHHHHHHHHHCTT---SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHH
T ss_pred CCHHHHHHHHHHHHHHhhc---ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHh
Confidence 9999999999999998743 6788888988877777777778999999999999999887788899999999999999
Q ss_pred hhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEe
Q 010709 282 LDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKV 330 (503)
Q Consensus 282 ~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 330 (503)
.+.+|...+..++..++++.|++++|||+++.+..+++.++.+|..+.+
T Consensus 157 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 157 LSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 9999999999999999999999999999999999999999999988754
No 63
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=4.8e-35 Score=268.96 Aligned_cols=211 Identities=36% Similarity=0.587 Sum_probs=180.8
Q ss_pred CCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCC
Q 010709 115 PAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDG 194 (503)
Q Consensus 115 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~ 194 (503)
..+.++.+|+++++++.+.+.+..+|+..|+++|.++++.+++|+++++++|||+|||++|++|++..+... ..+
T Consensus 8 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~-----~~~ 82 (224)
T 1qde_A 8 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VKA 82 (224)
T ss_dssp SCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----CCS
T ss_pred ccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc-----CCC
Confidence 456677889999999999999999999999999999999999999999999999999999999999876442 236
Q ss_pred CeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEE
Q 010709 195 PLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVI 274 (503)
Q Consensus 195 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vV 274 (503)
+++||++|+++|+.|+++.+++++... ++.+..+.|+.........+.. ++|+|+||++|.+.+.+....+.++++||
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iV 160 (224)
T 1qde_A 83 PQALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFI 160 (224)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEE
Confidence 789999999999999999999988655 5788888888876665544443 89999999999999988878889999999
Q ss_pred ecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCC
Q 010709 275 LDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGK 332 (503)
Q Consensus 275 iDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 332 (503)
+||||++.+++|...+..++..+++..|++++|||+++++..+++.++.+|..+.+..
T Consensus 161 iDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 161 LDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp EETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC---
T ss_pred EcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 9999999999999999999999999999999999999999999999999998876543
No 64
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.9e-35 Score=272.67 Aligned_cols=230 Identities=31% Similarity=0.531 Sum_probs=192.1
Q ss_pred HHHHHHHHcCceEEecCCCCCCCCCcCCcccC----CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCc
Q 010709 95 QIEEVRLRLNVDVTVASGSVPAPAPIESFTDM----CLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSG 170 (503)
Q Consensus 95 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsG 170 (503)
+++.++...++.+... ..|.++.+|+++ ++++.+++.+...||..|+++|.++++.+++|+++++++|||+|
T Consensus 3 ~~~~~~~~~~i~~~~~----~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsG 78 (245)
T 3dkp_A 3 KINFLRNKHKIHVQGT----DLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSG 78 (245)
T ss_dssp HHHHHHHHTTEEEESS----SCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSC
T ss_pred hHHHHHHhCceEecCC----CCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCc
Confidence 4567788888877754 678889999987 89999999999999999999999999999999999999999999
Q ss_pred hhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHH-HHhhCCCcEE
Q 010709 171 KTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR-SELRGGVSIV 249 (503)
Q Consensus 171 KTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Il 249 (503)
||++|++|++..+... ...++++||++|+++|+.|+++.+++++... ++.+..+.++....... .....+++|+
T Consensus 79 KT~~~~l~~l~~l~~~----~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 153 (245)
T 3dkp_A 79 KTLAFSIPILMQLKQP----ANKGFRALIISPTRELASQIHRELIKISEGT-GFRIHMIHKAAVAAKKFGPKSSKKFDIL 153 (245)
T ss_dssp HHHHHHHHHHHHHCSC----CSSSCCEEEECSSHHHHHHHHHHHHHHTTTS-CCCEECCCHHHHHHTTTSTTSCCCCCEE
T ss_pred HHHHHHHHHHHHHhhc----ccCCceEEEEeCCHHHHHHHHHHHHHHhccc-CceEEEEecCccHHHHhhhhhcCCCCEE
Confidence 9999999999887542 2346789999999999999999999998654 46666665544322211 1223568999
Q ss_pred EECcHHHHHHHHcC--CCCCCCccEEEecchhHHhh---CCCHHHHHHHHHhC-CCCCcEEEEEeeCCHHHHHHHHHhcC
Q 010709 250 VATPGRFLDHLQQG--NTSLSRVSFVILDEADRMLD---MGFEPQIREVMQNL-PDKHQTLLFSATMPVEIEALAQEYLT 323 (503)
Q Consensus 250 v~Tp~~l~~~l~~~--~~~l~~~~~vViDEaH~l~~---~~~~~~~~~il~~~-~~~~q~i~~SAT~~~~~~~~~~~~~~ 323 (503)
|+||++|.+.+.+. ...+.++++||+||||++.+ .+|...+..++..+ +++.|+++||||+++++..+++.++.
T Consensus 154 v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~ 233 (245)
T 3dkp_A 154 VTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLD 233 (245)
T ss_dssp EECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSS
T ss_pred EECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCC
Confidence 99999999999876 46788999999999999988 46888898888776 45789999999999999999999999
Q ss_pred CCeEEEeCCC
Q 010709 324 DPVQVKVGKV 333 (503)
Q Consensus 324 ~~~~~~~~~~ 333 (503)
+|..+.++..
T Consensus 234 ~p~~i~~~~~ 243 (245)
T 3dkp_A 234 NVISVSIGAR 243 (245)
T ss_dssp SCEEEEECC-
T ss_pred CCEEEEeCCC
Confidence 9999987653
No 65
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=2.9e-35 Score=307.22 Aligned_cols=263 Identities=18% Similarity=0.157 Sum_probs=197.5
Q ss_pred HHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCc
Q 010709 154 VALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGT 233 (503)
Q Consensus 154 ~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~ 233 (503)
..+++++++++||||+|||+ +++..+... +..+|++|||+||.|+++.+++. ++.+..++|+.
T Consensus 151 r~l~rk~vlv~apTGSGKT~----~al~~l~~~--------~~gl~l~PtR~LA~Qi~~~l~~~-----g~~v~lltG~~ 213 (677)
T 3rc3_A 151 RAMQRKIIFHSGPTNSGKTY----HAIQKYFSA--------KSGVYCGPLKLLAHEIFEKSNAA-----GVPCDLVTGEE 213 (677)
T ss_dssp HTSCCEEEEEECCTTSSHHH----HHHHHHHHS--------SSEEEEESSHHHHHHHHHHHHHT-----TCCEEEECSSC
T ss_pred HhcCCCEEEEEcCCCCCHHH----HHHHHHHhc--------CCeEEEeCHHHHHHHHHHHHHhc-----CCcEEEEECCe
Confidence 44578899999999999997 334443332 33599999999999999999886 36788888876
Q ss_pred cHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhCC-CCCcEEEEEeeCCH
Q 010709 234 NIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP-DKHQTLLFSATMPV 312 (503)
Q Consensus 234 ~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~-~~~q~i~~SAT~~~ 312 (503)
.... ..-....+++++|++.+. ....+++|||||||++.+.+++..+..++..++ ...+++++|||. +
T Consensus 214 ~~iv--~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~-~ 282 (677)
T 3rc3_A 214 RVTV--QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAI-D 282 (677)
T ss_dssp EECC--STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGH-H
T ss_pred eEEe--cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchH-H
Confidence 4310 000012567778775542 246789999999999999999999999999887 688999999996 3
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHH
Q 010709 313 EIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSE 392 (503)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~ 392 (503)
.+..+.... .....+........ ... .......+ . ...++.+|||+++++++.+++
T Consensus 283 ~i~~l~~~~-~~~~~v~~~~r~~~---l~~---~~~~l~~l-------~----------~~~~g~iIf~~s~~~ie~la~ 338 (677)
T 3rc3_A 283 LVMELMYTT-GEEVEVRDYKRLTP---ISV---LDHALESL-------D----------NLRPGDCIVCFSKNDIYSVSR 338 (677)
T ss_dssp HHHHHHHHH-TCCEEEEECCCSSC---EEE---CSSCCCSG-------G----------GCCTTEEEECSSHHHHHHHHH
T ss_pred HHHHHHHhc-CCceEEEEeeecch---HHH---HHHHHHHH-------H----------hcCCCCEEEEcCHHHHHHHHH
Confidence 455444443 33444322211100 000 00000000 0 011246899999999999999
Q ss_pred HHHHCCCeEEEEcCCCCHHHHHHHHHHHhc--CCCcEEEEccccccCCCCCCCCEEEEccC--------------CCChh
Q 010709 393 ALVAEGLHAVALHGGRNQSDRESALRDFRN--GSTNILVATDVASRGLDVMGVAHVVNLDL--------------PKVLL 456 (503)
Q Consensus 393 ~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~--g~~~vLvaT~~~~~Gldip~v~~VI~~~~--------------p~s~~ 456 (503)
.|.+.++.+..+||+|++.+|.++++.|++ |..+|||||+++++|||+ ++++||++|+ |.+..
T Consensus 339 ~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~ 417 (677)
T 3rc3_A 339 QIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTS 417 (677)
T ss_dssp HHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHH
T ss_pred HHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHH
Confidence 999999999999999999999999999999 889999999999999999 8999999999 77899
Q ss_pred HHHHhhCcceeee
Q 010709 457 AASESLCTTSFNI 469 (503)
Q Consensus 457 ~~~Qr~GR~gR~~ 469 (503)
+|+||+|||||.-
T Consensus 418 ~~~QR~GRAGR~g 430 (677)
T 3rc3_A 418 QALQIAGRAGRFS 430 (677)
T ss_dssp HHHHHHTTBTCTT
T ss_pred HHHHHhcCCCCCC
Confidence 9999999999965
No 66
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.8e-34 Score=270.94 Aligned_cols=204 Identities=38% Similarity=0.616 Sum_probs=179.2
Q ss_pred CCcccCC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEE
Q 010709 121 ESFTDMC--LHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLAL 198 (503)
Q Consensus 121 ~~~~~~~--l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~l 198 (503)
..|++++ +++.+++.+..+||..|+++|.++++.++.|+|+++++|||+|||++|++|++..+...... ...++++|
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~-~~~~~~~l 130 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM-PRNGTGVL 130 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC-GGGCCCEE
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc-ccCCceEE
Confidence 3466665 99999999999999999999999999999999999999999999999999999887764311 12367899
Q ss_pred EEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcC-CCCCCCccEEEecc
Q 010709 199 VLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG-NTSLSRVSFVILDE 277 (503)
Q Consensus 199 il~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~~l~~~~~vViDE 277 (503)
|++||++|+.|+++.+++++... +..+..++|+.........+..+++|+|+||+++.+.+.+. .+.+.++++|||||
T Consensus 131 il~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDE 209 (262)
T 3ly5_A 131 ILSPTRELAMQTFGVLKELMTHH-VHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDE 209 (262)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTC-CSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECS
T ss_pred EEeCCHHHHHHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcC
Confidence 99999999999999999998765 57888999999888887777778999999999999988775 36788999999999
Q ss_pred hhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCe
Q 010709 278 ADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPV 326 (503)
Q Consensus 278 aH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~ 326 (503)
||++.+++|...+..++..+++.+|+++||||+++.+..+++.++.++.
T Consensus 210 ah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 210 ADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred hHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999999999987653
No 67
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=2e-34 Score=264.08 Aligned_cols=206 Identities=32% Similarity=0.552 Sum_probs=181.9
Q ss_pred CcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEE
Q 010709 119 PIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLAL 198 (503)
Q Consensus 119 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~l 198 (503)
....|+++++++.+.+.+..+|+..|+++|.++++.+++++++++++|||+|||++|++|++..+... ..++++|
T Consensus 12 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~-----~~~~~~l 86 (220)
T 1t6n_A 12 HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVSVL 86 (220)
T ss_dssp --CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC-----TTCCCEE
T ss_pred cCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc-----CCCEEEE
Confidence 34569999999999999999999999999999999999999999999999999999999998875332 2346899
Q ss_pred EEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhh-CCCcEEEECcHHHHHHHHcCCCCCCCccEEEecc
Q 010709 199 VLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDE 277 (503)
Q Consensus 199 il~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDE 277 (503)
|++|+++|+.|+++.++++.....++.+..++|+.........+. ..++|+|+||+++.+.+.+....+.++++||+||
T Consensus 87 il~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDE 166 (220)
T 1t6n_A 87 VMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 166 (220)
T ss_dssp EECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEES
T ss_pred EEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcC
Confidence 999999999999999999987665688999999988766655554 4579999999999999988777889999999999
Q ss_pred hhHHhh-CCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCCeEEE
Q 010709 278 ADRMLD-MGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVK 329 (503)
Q Consensus 278 aH~l~~-~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~ 329 (503)
||++.+ .+|...+..++..++++.|++++|||+++.+..+++.++.+|..+.
T Consensus 167 ah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 167 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp HHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred HHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 999987 4788889999999988999999999999999999999999998764
No 68
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=2.4e-33 Score=289.02 Aligned_cols=298 Identities=13% Similarity=0.177 Sum_probs=205.4
Q ss_pred CCCcHHHHHHHHHHh----cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHH
Q 010709 142 TRPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (503)
Q Consensus 142 ~~~~~~Q~~~i~~i~----~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 217 (503)
..|+|+|.+++.++. .++++|++++||+|||++++ +++..+... ....++|||+|+ .|+.||.++++++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai-~~i~~~~~~-----~~~~~~LIv~P~-~l~~qw~~e~~~~ 108 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTI-AVFSDAKKE-----NELTPSLVICPL-SVLKNWEEELSKF 108 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHH-HHHHHHHHT-----TCCSSEEEEECS-TTHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHH-HHHHHHHhc-----CCCCCEEEEccH-HHHHHHHHHHHHH
Confidence 379999999998874 57789999999999999874 455554432 224679999995 5889999999998
Q ss_pred hccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhC
Q 010709 218 SRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL 297 (503)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~ 297 (503)
.. +..+..+.|+... ......+|+|+|++++.+... +....+++||+||||++.+.. ....+.+..+
T Consensus 109 ~~---~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l 175 (500)
T 1z63_A 109 AP---HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKEL 175 (500)
T ss_dssp CT---TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTS
T ss_pred CC---CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHHhh
Confidence 74 3556666555421 122457999999999965443 334578999999999987653 2345566666
Q ss_pred CCCCcEEEEEeeCCHH-HHHH------------------------------------HHHhcCCCeEEEeCCCC----CC
Q 010709 298 PDKHQTLLFSATMPVE-IEAL------------------------------------AQEYLTDPVQVKVGKVS----SP 336 (503)
Q Consensus 298 ~~~~q~i~~SAT~~~~-~~~~------------------------------------~~~~~~~~~~~~~~~~~----~~ 336 (503)
+. .+.+++||||..+ ..++ +..++ .|..+...... ..
T Consensus 176 ~~-~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l-~~~~lrr~k~~~~~~~~ 253 (500)
T 1z63_A 176 KS-KYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII-SPFILRRTKYDKAIIND 253 (500)
T ss_dssp CE-EEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH-TTTEECCCTTCHHHHTT
T ss_pred cc-CcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH-hhHeeeecccccchhhc
Confidence 43 4679999999432 1111 11111 12222211110 01
Q ss_pred CCceEEEEEEcC--hh-------------------------------------------------------hHHHHHHHH
Q 010709 337 TANVIQILEKVS--EN-------------------------------------------------------EKVDRLLAL 359 (503)
Q Consensus 337 ~~~~~~~~~~~~--~~-------------------------------------------------------~k~~~l~~~ 359 (503)
.+........+. .. .|...+..+
T Consensus 254 lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~ 333 (500)
T 1z63_A 254 LPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEI 333 (500)
T ss_dssp SCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHH
Confidence 111222222222 11 111122222
Q ss_pred HHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHC-CCeEEEEcCCCCHHHHHHHHHHHhcC-CCc-EEEEcccccc
Q 010709 360 LVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-GLHAVALHGGRNQSDRESALRDFRNG-STN-ILVATDVASR 436 (503)
Q Consensus 360 l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~-~~~v~~lh~~~~~~~r~~~~~~f~~g-~~~-vLvaT~~~~~ 436 (503)
+.+.. ....++||||++...++.+++.|... |+.+..+||++++.+|.++++.|++| ..+ +|++|+++++
T Consensus 334 l~~~~-------~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~ 406 (500)
T 1z63_A 334 IEEAL-------DEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGF 406 (500)
T ss_dssp HHHHH-------TTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-C
T ss_pred HHHHH-------ccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccC
Confidence 22111 24568999999999999999999885 99999999999999999999999998 454 7999999999
Q ss_pred CCCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 437 GLDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 437 Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
|+|+|++++||++|+|+++..|.||+||++|.
T Consensus 407 Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~ 438 (500)
T 1z63_A 407 GINLTSANRVIHFDRWWNPAVEDQATDRVYRI 438 (500)
T ss_dssp CCCCTTCSEEEESSCCSCC---CHHHHTTTTT
T ss_pred CCchhhCCEEEEeCCCCCcchHHHHHHHHHHc
Confidence 99999999999999999999999999999994
No 69
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=3e-34 Score=314.25 Aligned_cols=307 Identities=18% Similarity=0.165 Sum_probs=207.4
Q ss_pred CCCcHHHHHHHHHHhcC--CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhc
Q 010709 142 TRPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (503)
Q Consensus 142 ~~~~~~Q~~~i~~i~~~--~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~ 219 (503)
..|+|+|.+++..++.. .++|++++||+|||++++..+...+ .. +...++|||+|+ .|+.||.+++.+.+
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~-~~-----g~~~rvLIVvP~-sLl~Qw~~E~~~~f- 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQL-LS-----GAAERVLIIVPE-TLQHQWLVEMLRRF- 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHH-HT-----SSCCCEEEECCT-TTHHHHHHHHHHHS-
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHH-Hh-----CCCCeEEEEeCH-HHHHHHHHHHHHHh-
Confidence 47999999999998864 4699999999999999866554443 32 123579999999 99999999997765
Q ss_pred cCCCceEEEEECCccHHHHHH--HhhCCCcEEEECcHHHHHHHHc-CCCCCCCccEEEecchhHHhhCCCH-HHHHHHHH
Q 010709 220 SLDSFKTAIVVGGTNIAEQRS--ELRGGVSIVVATPGRFLDHLQQ-GNTSLSRVSFVILDEADRMLDMGFE-PQIREVMQ 295 (503)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Ilv~Tp~~l~~~l~~-~~~~l~~~~~vViDEaH~l~~~~~~-~~~~~il~ 295 (503)
++.+.++.++........ ......+|+|+|++.+.+.... ..+...++++|||||||++.+.+.. ....+.+.
T Consensus 224 ---~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~ 300 (968)
T 3dmq_A 224 ---NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIE 300 (968)
T ss_dssp ---CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHH
T ss_pred ---CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHH
Confidence 344554443322211110 1123578999999988642211 1123457999999999998655321 11122222
Q ss_pred hC-CCCCcEEEEEeeCCH----HHHHHH----------------------------HHhcC-------------------
Q 010709 296 NL-PDKHQTLLFSATMPV----EIEALA----------------------------QEYLT------------------- 323 (503)
Q Consensus 296 ~~-~~~~q~i~~SAT~~~----~~~~~~----------------------------~~~~~------------------- 323 (503)
.+ ....+++++||||-. ++..++ ..+..
T Consensus 301 ~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~ 380 (968)
T 3dmq_A 301 QLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQ 380 (968)
T ss_dssp HHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTT
T ss_pred HHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcch
Confidence 22 234569999999832 000000 00000
Q ss_pred ---------------------------------CCeEEEeCCC---CCCCCceEEEEE----------------------
Q 010709 324 ---------------------------------DPVQVKVGKV---SSPTANVIQILE---------------------- 345 (503)
Q Consensus 324 ---------------------------------~~~~~~~~~~---~~~~~~~~~~~~---------------------- 345 (503)
....+..... ..+.........
T Consensus 381 ~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (968)
T 3dmq_A 381 DIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSA 460 (968)
T ss_dssp CSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSG
T ss_pred hhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhh
Confidence 0000000000 000111111111
Q ss_pred -----------------------EcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHH-CCCeE
Q 010709 346 -----------------------KVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVA-EGLHA 401 (503)
Q Consensus 346 -----------------------~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~-~~~~v 401 (503)
.+....|...+..++.. .+..++||||+++..++.+++.|.. .|+.+
T Consensus 461 ~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~---------~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~ 531 (968)
T 3dmq_A 461 EDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS---------HRSQKVLVICAKAATALQLEQVLREREGIRA 531 (968)
T ss_dssp GGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH---------TSSSCCCEECSSTHHHHHHHHHHHTTTCCCE
T ss_pred HHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh---------CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcE
Confidence 11223355555555543 3556899999999999999999995 59999
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCC--CcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 402 VALHGGRNQSDRESALRDFRNGS--TNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 402 ~~lh~~~~~~~r~~~~~~f~~g~--~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
..+||++++.+|..+++.|++|+ .+|||||+++++|+|+|++++||+||+|+++..|.||+||+||.
T Consensus 532 ~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~ 600 (968)
T 3dmq_A 532 AVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRI 600 (968)
T ss_dssp EEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCS
T ss_pred EEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccC
Confidence 99999999999999999999998 99999999999999999999999999999999999999999994
No 70
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.6e-30 Score=273.90 Aligned_cols=317 Identities=15% Similarity=0.155 Sum_probs=208.3
Q ss_pred CCcHHHHHHHHHHh---------cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHH
Q 010709 143 RPTSIQAQAMPVAL---------SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 213 (503)
Q Consensus 143 ~~~~~Q~~~i~~i~---------~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~ 213 (503)
.++|+|.+++.++. .++.+|++.+||+|||++++.. +..+............++|||+|+ .|+.||.++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~-i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITL-IWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHH-HHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHH-HHHHHHhCccccCCCCcEEEEecH-HHHHHHHHH
Confidence 68999999999875 3456999999999999987554 444444332222334579999997 788999999
Q ss_pred HHHHhccCCCceEEEEECCccHHHH--HHHh-h-----CCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCC
Q 010709 214 VKALSRSLDSFKTAIVVGGTNIAEQ--RSEL-R-----GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG 285 (503)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~-----~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~ 285 (503)
+.++... .+.+..++++...... .... . ...+|+|+|++.+..... .+....+++||+||||++.+..
T Consensus 133 ~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI~DEaH~ikn~~ 208 (644)
T 1z3i_X 133 VGKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRLKNSD 208 (644)
T ss_dssp HHHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGCCTTC
T ss_pred HHHHcCC--CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEEEECceecCChh
Confidence 9999754 2556666665533211 1111 1 147899999999976432 3445678999999999986543
Q ss_pred CHHHHHHHHHhCCCCCcEEEEEeeCCHHH----H---------------HHHHHhc------------------------
Q 010709 286 FEPQIREVMQNLPDKHQTLLFSATMPVEI----E---------------ALAQEYL------------------------ 322 (503)
Q Consensus 286 ~~~~~~~il~~~~~~~q~i~~SAT~~~~~----~---------------~~~~~~~------------------------ 322 (503)
....+.+..++. .+.+++||||-.+- . .+.+.|.
T Consensus 209 --~~~~~al~~l~~-~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~ 285 (644)
T 1z3i_X 209 --NQTYLALNSMNA-QRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQ 285 (644)
T ss_dssp --HHHHHHHHHHCC-SEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHH
T ss_pred --hHHHHHHHhccc-CcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHH
Confidence 233444444543 45799999983221 0 0000000
Q ss_pred -----CCCeEEEeCCCC--CCCCceEEEEEEcChhhHHHHHHHHHHHHH-------------------------------
Q 010709 323 -----TDPVQVKVGKVS--SPTANVIQILEKVSENEKVDRLLALLVEEA------------------------------- 364 (503)
Q Consensus 323 -----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~------------------------------- 364 (503)
..|..+...... ...+........+.....-..++..+....
T Consensus 286 ~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l 365 (644)
T 1z3i_X 286 ELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPAL 365 (644)
T ss_dssp HHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHH
T ss_pred HHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHH
Confidence 001111110000 011111122222211111111111000000
Q ss_pred -----H------------------------------------hhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEE
Q 010709 365 -----F------------------------------------LAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVA 403 (503)
Q Consensus 365 -----~------------------------------------~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~ 403 (503)
. .......+..++||||+....++.+.+.|...|+.+..
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~ 445 (644)
T 1z3i_X 366 IYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVR 445 (644)
T ss_dssp HHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEE
Confidence 0 00000013568999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHHHhcCCCc---EEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 404 LHGGRNQSDRESALRDFRNGSTN---ILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 404 lh~~~~~~~r~~~~~~f~~g~~~---vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
+||++++.+|.++++.|++|... +|++|.++++|||++++++||+||+|+++..+.|++||++|.
T Consensus 446 l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~ 513 (644)
T 1z3i_X 446 LDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRD 513 (644)
T ss_dssp ECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSST
T ss_pred EeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhc
Confidence 99999999999999999998754 899999999999999999999999999999999999999983
No 71
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-31 Score=287.18 Aligned_cols=360 Identities=16% Similarity=0.202 Sum_probs=237.2
Q ss_pred CCCCCCCcccCCCHHHHHHHHHHcCceEEecCCCCCCCCCcCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh---
Q 010709 80 NNWKPSDRVLRFNPEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVAL--- 156 (503)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~--- 156 (503)
..|.....+....++.++.+..+.+........ ...+.....|..+...+... .-..++++|.+++.+++
T Consensus 180 ~tWe~~~~~~~~~~~~i~~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~------~~~~Lr~yQ~egv~~l~~~~ 252 (800)
T 3mwy_W 180 ATWENATDIVKLAPEQVKHFQNRENSKILPQYS-SNYTSQRPRFEKLSVQPPFI------KGGELRDFQLTGINWMAFLW 252 (800)
T ss_dssp CBCCBHHHHTTTCHHHHHHHHHTTTCTTCSTTC-CCCCSCCCCCCCCSSCCTTC------CSSCCCTHHHHHHHHHHHHH
T ss_pred ccccchhhhhhhhHHHHHHHHHhhhcccCCcch-hcccccCCcccccccCCCcc------CCCCcCHHHHHHHHHHHHHh
Confidence 356555555667777888887765433221110 01112222344443322221 12479999999998876
Q ss_pred -cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccH
Q 010709 157 -SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNI 235 (503)
Q Consensus 157 -~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (503)
.++++|++.+||+|||++++..+...+... ...+.+||||| ..|+.||.+++.+++. ++.+.+++|+...
T Consensus 253 ~~~~~~ILademGlGKT~~ai~~i~~l~~~~-----~~~~~~LIV~P-~sll~qW~~E~~~~~p---~~~v~~~~g~~~~ 323 (800)
T 3mwy_W 253 SKGDNGILADEMGLGKTVQTVAFISWLIFAR-----RQNGPHIIVVP-LSTMPAWLDTFEKWAP---DLNCICYMGNQKS 323 (800)
T ss_dssp TTTCCEEECCCTTSSTTHHHHHHHHHHHHHH-----SCCSCEEEECC-TTTHHHHHHHHHHHST---TCCEEECCCSSHH
T ss_pred hcCCCEEEEeCCCcchHHHHHHHHHHHHHhc-----CCCCCEEEEEC-chHHHHHHHHHHHHCC---CceEEEEeCCHHH
Confidence 788999999999999998754443332222 12456899999 5788999999999873 4667777776655
Q ss_pred HHHHHHh------------hCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcE
Q 010709 236 AEQRSEL------------RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQT 303 (503)
Q Consensus 236 ~~~~~~~------------~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~ 303 (503)
....... ....+|+|+|++.+...... +....+++|||||||++.+. .....+.+..++.. ..
T Consensus 324 r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~--~s~~~~~l~~l~~~-~r 398 (800)
T 3mwy_W 324 RDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNA--ESSLYESLNSFKVA-NR 398 (800)
T ss_dssp HHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCS--SSHHHHHHTTSEEE-EE
T ss_pred HHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCc--hhHHHHHHHHhhhc-cE
Confidence 4443322 23578999999999765432 22346899999999998654 33456666666544 46
Q ss_pred EEEEeeCC----HHHHHHHHHhcC-----------------------------CCeEEEeCCCC--CCCCceEEEEEEcC
Q 010709 304 LLFSATMP----VEIEALAQEYLT-----------------------------DPVQVKVGKVS--SPTANVIQILEKVS 348 (503)
Q Consensus 304 i~~SAT~~----~~~~~~~~~~~~-----------------------------~~~~~~~~~~~--~~~~~~~~~~~~~~ 348 (503)
+++||||- .++..++..... .|..+...... ...+........+.
T Consensus 399 l~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ 478 (800)
T 3mwy_W 399 MLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVE 478 (800)
T ss_dssp EEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEEC
T ss_pred EEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeC
Confidence 88999982 222222221111 11122111100 00111112222221
Q ss_pred hh---------------------------------------------------------------------------hHH
Q 010709 349 EN---------------------------------------------------------------------------EKV 353 (503)
Q Consensus 349 ~~---------------------------------------------------------------------------~k~ 353 (503)
.. .|+
T Consensus 479 ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~ 558 (800)
T 3mwy_W 479 LSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKM 558 (800)
T ss_dssp CCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHH
Confidence 11 122
Q ss_pred HHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCC---cEEEE
Q 010709 354 DRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGST---NILVA 430 (503)
Q Consensus 354 ~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~---~vLva 430 (503)
..+..++... ...+.++||||+....++.|.++|...|+.+..+||+++..+|.++++.|++|.. .+|++
T Consensus 559 ~~L~~lL~~~-------~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlS 631 (800)
T 3mwy_W 559 VLLDQLLTRL-------KKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLS 631 (800)
T ss_dssp HHHHHHHHHH-------TTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEE
T ss_pred HHHHHHHHHH-------hhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEe
Confidence 2222222211 1245689999999999999999999999999999999999999999999998654 49999
Q ss_pred ccccccCCCCCCCCEEEEccCCCChhHHHHhhCccee
Q 010709 431 TDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSF 467 (503)
Q Consensus 431 T~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR 467 (503)
|.++++|||++.+++||+||+|+++..+.||+||++|
T Consensus 632 t~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~R 668 (800)
T 3mwy_W 632 TRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHR 668 (800)
T ss_dssp HHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSC
T ss_pred cccccCCCCccccceEEEecCCCChhhHHHHHHHHHh
Confidence 9999999999999999999999999999999999999
No 72
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.98 E-value=2e-31 Score=289.57 Aligned_cols=311 Identities=12% Similarity=0.068 Sum_probs=209.2
Q ss_pred CCCcHHHHHHHHHHhc--------------CCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHH
Q 010709 142 TRPTSIQAQAMPVALS--------------GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELA 207 (503)
Q Consensus 142 ~~~~~~Q~~~i~~i~~--------------~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La 207 (503)
..|+++|.+|++.++. +++++++++||||||+++ ++++..+... ...+++|||+|+++|+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~-----~~~~rvLvlvpr~eL~ 343 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL-----DFIDKVFFVVDRKDLD 343 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC-----TTCCEEEEEECGGGCC
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc-----CCCceEEEEeCcHHHH
Confidence 3599999999999875 367999999999999997 6666443221 2246899999999999
Q ss_pred HHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhh-CCCcEEEECcHHHHHHHHcCC--CCCCCccEEEecchhHHhhC
Q 010709 208 QQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELR-GGVSIVVATPGRFLDHLQQGN--TSLSRVSFVILDEADRMLDM 284 (503)
Q Consensus 208 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~--~~l~~~~~vViDEaH~l~~~ 284 (503)
.|+.+.++.+.... +.++.........+. .+.+|+|+|+++|...+.... ..+..+.+||+||||++..
T Consensus 344 ~Q~~~~f~~f~~~~-------v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~- 415 (1038)
T 2w00_A 344 YQTMKEYQRFSPDS-------VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF- 415 (1038)
T ss_dssp HHHHHHHHTTSTTC-------SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH-
T ss_pred HHHHHHHHHhcccc-------cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc-
Confidence 99999998876421 224444444444453 568999999999998876532 2456789999999999763
Q ss_pred CCHHHHHHHHHhCCCCCcEEEEEeeCCHHHH----HHHHHhcCC-----------------CeEEEeCCCCCCCC--ceE
Q 010709 285 GFEPQIREVMQNLPDKHQTLLFSATMPVEIE----ALAQEYLTD-----------------PVQVKVGKVSSPTA--NVI 341 (503)
Q Consensus 285 ~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~----~~~~~~~~~-----------------~~~~~~~~~~~~~~--~~~ 341 (503)
...+..+...+++ .++++|||||..... .....++++ |..+.......... ...
T Consensus 416 --~~~~~~I~~~~p~-a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e 492 (1038)
T 2w00_A 416 --GEAQKNLKKKFKR-YYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETE 492 (1038)
T ss_dssp --HHHHHHHHHHCSS-EEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTC
T ss_pred --hHHHHHHHHhCCc-ccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhcccc
Confidence 3345667777754 689999999964321 112222232 22221111000000 000
Q ss_pred ---------EEEEEcChhhHHHHHHHHHHHHHHhhhcc---CCCCCcEEEEEcchhhHHHHHHHHHHCC-----------
Q 010709 342 ---------QILEKVSENEKVDRLLALLVEEAFLAEKS---CHPFPLTIVFVERKTRCDEVSEALVAEG----------- 398 (503)
Q Consensus 342 ---------~~~~~~~~~~k~~~l~~~l~~~~~~~~~~---~~~~~~~lIF~~~~~~~~~l~~~L~~~~----------- 398 (503)
..........++..+...+..+....... .....++||||.++..|..+++.|.+.+
T Consensus 493 ~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~ 572 (1038)
T 2w00_A 493 TDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYK 572 (1038)
T ss_dssp CCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCC
T ss_pred ccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccc
Confidence 00000012223334444343332221110 1123579999999999999999997754
Q ss_pred -CeEE-EEcCC----------C----------CH-----------------------------HHHHHHHHHHhcCCCcE
Q 010709 399 -LHAV-ALHGG----------R----------NQ-----------------------------SDRESALRDFRNGSTNI 427 (503)
Q Consensus 399 -~~v~-~lh~~----------~----------~~-----------------------------~~r~~~~~~f~~g~~~v 427 (503)
+++. .+|++ + ++ .+|..+++.|++|+.+|
T Consensus 573 ~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~I 652 (1038)
T 2w00_A 573 PLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDL 652 (1038)
T ss_dssp CCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSE
T ss_pred cCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeE
Confidence 4554 45542 2 22 14788999999999999
Q ss_pred EEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCcceeeee
Q 010709 428 LVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFNIT 470 (503)
Q Consensus 428 LvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~~~ 470 (503)
||+|+++.+|+|+|.+ .|+++|.|.+...|+||+||++|..-
T Consensus 653 LIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~ 694 (1038)
T 2w00_A 653 LIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYD 694 (1038)
T ss_dssp EEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCC
T ss_pred EEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCC
Confidence 9999999999999999 78899999999999999999999764
No 73
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.97 E-value=5.6e-30 Score=259.89 Aligned_cols=301 Identities=17% Similarity=0.178 Sum_probs=221.1
Q ss_pred CCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCC
Q 010709 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (503)
Q Consensus 143 ~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~ 222 (503)
.|+++|..+...+..|+ |..+.||.|||+++.+|++...+. |..+.|++|++.||.|-++.+..+...+
T Consensus 75 r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~--------G~~vhVvT~ndyLA~rdae~m~~l~~~L- 143 (822)
T 3jux_A 75 RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI--------GKGVHLVTVNDYLARRDALWMGPVYLFL- 143 (822)
T ss_dssp CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHHHHHT-
T ss_pred CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc--------CCceEEEeccHHHHHhHHHHHHHHHHHh-
Confidence 79999999999888886 899999999999999999876554 5679999999999999999999998877
Q ss_pred CceEEEEECC--------------------------------------------------ccHHHHHHHhhCCCcEEEEC
Q 010709 223 SFKTAIVVGG--------------------------------------------------TNIAEQRSELRGGVSIVVAT 252 (503)
Q Consensus 223 ~~~~~~~~~~--------------------------------------------------~~~~~~~~~~~~~~~Ilv~T 252 (503)
++.+++++.. ....+ +.....++|+++|
T Consensus 144 glsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e--rr~aY~~DItYgT 221 (822)
T 3jux_A 144 GLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEIT--RKEAYLCDVTYGT 221 (822)
T ss_dssp TCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCC--HHHHHHSSEEEEE
T ss_pred CCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHH--HHHHhcCCCEEcc
Confidence 5999998872 11111 1122348999999
Q ss_pred cHHH-HHHHHcC------CCCCCCccEEEecchhHHh-hCC------------CH---HH--------------------
Q 010709 253 PGRF-LDHLQQG------NTSLSRVSFVILDEADRML-DMG------------FE---PQ-------------------- 289 (503)
Q Consensus 253 p~~l-~~~l~~~------~~~l~~~~~vViDEaH~l~-~~~------------~~---~~-------------------- 289 (503)
..-| .+.+..+ ....+.+.+.||||+|.++ +.. -. ..
T Consensus 222 n~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~ 301 (822)
T 3jux_A 222 NNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKA 301 (822)
T ss_dssp HHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSS
T ss_pred CcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEccc
Confidence 9887 3444322 2234678999999999632 100 00 00
Q ss_pred ---------------------------------HHHHHH---hCCC----------------------------------
Q 010709 290 ---------------------------------IREVMQ---NLPD---------------------------------- 299 (503)
Q Consensus 290 ---------------------------------~~~il~---~~~~---------------------------------- 299 (503)
+...++ .+..
T Consensus 302 ~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQa 381 (822)
T 3jux_A 302 RTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQA 381 (822)
T ss_dssp SCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHH
T ss_pred CeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHH
Confidence 000000 0100
Q ss_pred ---------------------------CCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEE-EEEEcChhh
Q 010709 300 ---------------------------KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQ-ILEKVSENE 351 (503)
Q Consensus 300 ---------------------------~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 351 (503)
-.++.+||+|...+...+.+.|-.+ .+.+ +...+.....+ .........
T Consensus 382 iEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~I-Ptnkp~~R~d~~d~vy~t~~e 458 (822)
T 3jux_A 382 IEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVVI-PTHKPMIRKDHDDLVFRTQKE 458 (822)
T ss_dssp HHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEEC-CCSSCCCCEECCCEEESSHHH
T ss_pred HHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEEE-CCCCCcceeecCcEEEecHHH
Confidence 0268999999988777766655333 2323 22223223322 345667788
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEc
Q 010709 352 KVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT 431 (503)
Q Consensus 352 k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT 431 (503)
|...+...+...... ..++||||++++.++.+++.|.+.|+.+..+||+..+.++..+.+.++.| .|+|||
T Consensus 459 K~~al~~~I~~~~~~-------gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVAT 529 (822)
T 3jux_A 459 KYEKIVEEIEKRYKK-------GQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIAT 529 (822)
T ss_dssp HHHHHHHHHHHHHHH-------TCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEE
T ss_pred HHHHHHHHHHHHhhC-------CCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEc
Confidence 888888888765322 23699999999999999999999999999999997666666666666655 699999
Q ss_pred cccccCCCCC--------CCCEEEEccCCCChhHHHHhhCcceee
Q 010709 432 DVASRGLDVM--------GVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 432 ~~~~~Gldip--------~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
++++||+||+ +..+||++++|.+...|.||+||+||.
T Consensus 530 dmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRq 574 (822)
T 3jux_A 530 NMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQ 574 (822)
T ss_dssp TTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCS
T ss_pred chhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccC
Confidence 9999999998 667999999999999999999999994
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.95 E-value=1.4e-25 Score=232.03 Aligned_cols=131 Identities=21% Similarity=0.273 Sum_probs=112.4
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHH
Q 010709 138 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (503)
Q Consensus 138 ~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 217 (503)
..|+ .|+++|..+++.+++|+ |..+.||+|||++|.+|++...+. +..++|++||++||.|.++.+..+
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~--------G~qv~VvTPTreLA~Qdae~m~~l 143 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT--------GKGVHVVTVNDYLARRDAEWMGPV 143 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT--------CSCCEEEESSHHHHHHHHHHHHHH
T ss_pred HhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh--------CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 4788 99999999999999998 999999999999999999765443 457999999999999999999999
Q ss_pred hccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHH-HHHHHcCC------CCCC---CccEEEecchhHHh
Q 010709 218 SRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGN------TSLS---RVSFVILDEADRML 282 (503)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~~------~~l~---~~~~vViDEaH~l~ 282 (503)
...+ ++++.+++||..... +....+++|+|+||+.| ++++..+. +.+. .+.++||||+|.++
T Consensus 144 ~~~l-GLsv~~i~Gg~~~~~--r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 144 YRGL-GLSVGVIQHASTPAE--RRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HHTT-TCCEEECCTTCCHHH--HHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HHhc-CCeEEEEeCCCCHHH--HHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 9877 699999999987543 33345699999999999 78887652 4567 89999999999876
No 75
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.95 E-value=2.9e-26 Score=241.24 Aligned_cols=154 Identities=22% Similarity=0.177 Sum_probs=116.5
Q ss_pred CCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEE
Q 010709 300 KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIV 379 (503)
Q Consensus 300 ~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lI 379 (503)
..|++++|||++...... .. ..+............. +.......+...++..+..... ...++||
T Consensus 380 ~~q~i~~SAT~~~~~~~~----~~--~~~~~~~r~~~l~~p~--i~v~~~~~~~~~Ll~~l~~~~~-------~~~~vlV 444 (664)
T 1c4o_A 380 VSQVVFVSATPGPFELAH----SG--RVVEQIIRPTGLLDPL--VRVKPTENQILDLMEGIRERAA-------RGERTLV 444 (664)
T ss_dssp CSEEEEEESSCCHHHHHH----CS--EEEEECSCTTCCCCCE--EEEECSTTHHHHHHHHHHHHHH-------TTCEEEE
T ss_pred cCCEEEEecCCCHHHHHh----hh--CeeeeeeccCCCCCCe--EEEecccchHHHHHHHHHHHHh-------cCCEEEE
Confidence 578999999997643211 11 1111111110000111 1122333455566555544332 2347999
Q ss_pred EEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccC-----CCC
Q 010709 380 FVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDL-----PKV 454 (503)
Q Consensus 380 F~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~-----p~s 454 (503)
||+++..++.+++.|...|+.+..+||++++.+|.++++.|+.|+.+|||||+++++|+|+|++++||++|. |.+
T Consensus 445 f~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s 524 (664)
T 1c4o_A 445 TVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRS 524 (664)
T ss_dssp ECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGS
T ss_pred EECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997 899
Q ss_pred hhHHHHhhCcceee
Q 010709 455 LLAASESLCTTSFN 468 (503)
Q Consensus 455 ~~~~~Qr~GR~gR~ 468 (503)
..+|+||+||+||.
T Consensus 525 ~~~~iQr~GRagR~ 538 (664)
T 1c4o_A 525 ERSLIQTIGRAARN 538 (664)
T ss_dssp HHHHHHHHGGGTTS
T ss_pred HHHHHHHHCccCcC
Confidence 99999999999995
No 76
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.94 E-value=6.9e-25 Score=230.64 Aligned_cols=155 Identities=18% Similarity=0.204 Sum_probs=117.5
Q ss_pred CCCcEEEEEeeCCHHHHHHHHHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEE
Q 010709 299 DKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTI 378 (503)
Q Consensus 299 ~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~l 378 (503)
...|++++|||++...... ................. . +.......+...++..+.... ....++|
T Consensus 385 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~p-~---i~v~~~~~~~~~Ll~~l~~~~-------~~~~~vl 449 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEH----TDEMVEQIIRPTGLLDP-L---IDVRPIEGQIDDLIGEIQARI-------ERNERVL 449 (661)
T ss_dssp TCSEEEEECSSCCHHHHHH----CSSCEEECCCTTCCCCC-E---EEEECSTTHHHHHHHHHHHHH-------TTTCEEE
T ss_pred cCCCEEEEecCCChhHHHh----hhCeeeeeecccCCCCC-e---EEEecccchHHHHHHHHHHHH-------hcCCeEE
Confidence 3578999999997653221 11222211111111111 1 112233345555655554432 1335799
Q ss_pred EEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccC-----CC
Q 010709 379 VFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDL-----PK 453 (503)
Q Consensus 379 IF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~-----p~ 453 (503)
|||+++..++.+++.|...|+.+..+||++++.+|.++++.|+.|+.+|||||+++++|+|+|++++||++|. |.
T Consensus 450 Vf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~ 529 (661)
T 2d7d_A 450 VTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLR 529 (661)
T ss_dssp EECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTT
T ss_pred EEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997 99
Q ss_pred ChhHHHHhhCcceee
Q 010709 454 VLLAASESLCTTSFN 468 (503)
Q Consensus 454 s~~~~~Qr~GR~gR~ 468 (503)
+..+|+||+||+||.
T Consensus 530 s~~~~iQr~GRagR~ 544 (661)
T 2d7d_A 530 SERSLIQTIGRAARN 544 (661)
T ss_dssp SHHHHHHHHHTTTTS
T ss_pred CHHHHHHHhCcccCC
Confidence 999999999999995
No 77
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.92 E-value=1.1e-24 Score=193.26 Aligned_cols=140 Identities=34% Similarity=0.535 Sum_probs=113.2
Q ss_pred HHhcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCC
Q 010709 319 QEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEG 398 (503)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~ 398 (503)
..|+.+|..+.+........++.+.+..+....|...+..++.. ..+++||||+++..++.+++.|...|
T Consensus 9 ~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~----------~~~~~lVF~~~~~~~~~l~~~L~~~g 78 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQK----------TPPPVLIFAEKKADVDAIHEYLLLKG 78 (191)
T ss_dssp -------------------CCSEEEEEECCGGGHHHHHHHHHTT----------SCSCEEEECSCHHHHHHHHHHHHHHT
T ss_pred ccccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHh----------CCCCEEEEECCHHHHHHHHHHHHHcC
Confidence 35778898888877777788899999999999999888877643 23479999999999999999999999
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 399 LHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 399 ~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
+.+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|++++||+||+|.+...|+||+||+||.
T Consensus 79 ~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~ 148 (191)
T 2p6n_A 79 VEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCS 148 (191)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC-
T ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999995
No 78
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.91 E-value=8.7e-25 Score=199.20 Aligned_cols=167 Identities=20% Similarity=0.231 Sum_probs=120.3
Q ss_pred CCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHH-HHHHHHHH
Q 010709 139 HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQ-IEKEVKAL 217 (503)
Q Consensus 139 ~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q-~~~~~~~~ 217 (503)
.....|+++|.++++.+++++++++++|||+|||++|+++++..+..... ...++++||++|+++|+.| +.+.++.+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH--TTCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc--ccCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999999988876554211 1235779999999999999 88888888
Q ss_pred hccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCC------CCCCCccEEEecchhHHhhCCCHHHHH
Q 010709 218 SRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN------TSLSRVSFVILDEADRMLDMGFEPQIR 291 (503)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~------~~l~~~~~vViDEaH~l~~~~~~~~~~ 291 (503)
... ++.+..+.|+............+++|+|+||++|.+.+.... ..+.++++|||||||++.+.++...+.
T Consensus 107 ~~~--~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~ 184 (216)
T 3b6e_A 107 LKK--WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIM 184 (216)
T ss_dssp HTT--TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHH
T ss_pred hcc--CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHH
Confidence 754 467777777765443333344468999999999999887643 567889999999999998765555443
Q ss_pred -HHHHhC-------------CCCCcEEEEEee
Q 010709 292 -EVMQNL-------------PDKHQTLLFSAT 309 (503)
Q Consensus 292 -~il~~~-------------~~~~q~i~~SAT 309 (503)
.++... .+..++|+||||
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 185 RHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 322211 157889999998
No 79
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.91 E-value=1.9e-23 Score=181.01 Aligned_cols=125 Identities=30% Similarity=0.410 Sum_probs=115.7
Q ss_pred CCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHH
Q 010709 335 SPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRE 414 (503)
Q Consensus 335 ~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~ 414 (503)
....++.+.+..++...|...+..++... ..+++||||+++..++.+++.|...|+.+..+||++++.+|.
T Consensus 5 ~~~~~i~~~~~~~~~~~K~~~L~~ll~~~---------~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~ 75 (163)
T 2hjv_A 5 LTTRNIEHAVIQVREENKFSLLKDVLMTE---------NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRF 75 (163)
T ss_dssp -CCCCEEEEEEECCGGGHHHHHHHHHHHH---------CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHH
T ss_pred cCcccceEEEEECChHHHHHHHHHHHHhc---------CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHH
Confidence 34556889999999999999988887653 345799999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 415 SALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 415 ~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
.+++.|++|+.+|||||+++++|+|+|++++||+||+|.+...|+||+||+||.
T Consensus 76 ~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~ 129 (163)
T 2hjv_A 76 DVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRA 129 (163)
T ss_dssp HHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCT
T ss_pred HHHHHHHcCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcC
Confidence 999999999999999999999999999999999999999999999999999995
No 80
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.90 E-value=1.7e-23 Score=182.86 Aligned_cols=122 Identities=29% Similarity=0.415 Sum_probs=113.7
Q ss_pred CceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHH
Q 010709 338 ANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESAL 417 (503)
Q Consensus 338 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~ 417 (503)
..+.+.+..++...|...+..++... +.+++||||+++..++.+++.|...|+.+..+||++++.+|..++
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~---------~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~ 74 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVL---------EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRY 74 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHS---------CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhC---------CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHH
Confidence 46788899999999999888887642 456899999999999999999999999999999999999999999
Q ss_pred HHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 418 RDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 418 ~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
+.|++|+.+|||||+++++|+|+|++++||+||+|++...|+||+||+||.
T Consensus 75 ~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~ 125 (172)
T 1t5i_A 75 QQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRF 125 (172)
T ss_dssp HHHHTTSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGG
T ss_pred HHHHCCCCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccC
Confidence 999999999999999999999999999999999999999999999999995
No 81
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.90 E-value=4.8e-23 Score=182.00 Aligned_cols=127 Identities=41% Similarity=0.561 Sum_probs=102.5
Q ss_pred CCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHH
Q 010709 334 SSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDR 413 (503)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r 413 (503)
.....++.+.+..++...|...|..++... .+.+++||||+++..++.+++.|...|+.+..+||++++.+|
T Consensus 14 ~~~~~~i~q~~~~v~~~~K~~~L~~ll~~~--------~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r 85 (185)
T 2jgn_A 14 GSTSENITQKVVWVEESDKRSFLLDLLNAT--------GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDR 85 (185)
T ss_dssp --CCTTEEEEEEECCGGGHHHHHHHHHHHC---------CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------
T ss_pred CCCCCCceEEEEEeCcHHHHHHHHHHHHhc--------CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHH
Confidence 345668999999999999999888887652 245679999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 414 ESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 414 ~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
..+++.|++|+.+|||||+++++|+|+|++++||+||+|++..+|+||+||+||.
T Consensus 86 ~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~ 140 (185)
T 2jgn_A 86 EEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRV 140 (185)
T ss_dssp CHHHHHHHHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCT
T ss_pred HHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCC
Confidence 9999999999999999999999999999999999999999999999999999994
No 82
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.90 E-value=2.1e-23 Score=192.32 Aligned_cols=182 Identities=18% Similarity=0.217 Sum_probs=131.4
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHH
Q 010709 130 PSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQ 209 (503)
Q Consensus 130 ~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q 209 (503)
+.+.+.+.......++++|.++++.+..|++++++||||+|||+++.++++........ ..+.++++++|+++++.|
T Consensus 48 ~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~---~~~~~~l~~~p~~~la~q 124 (235)
T 3llm_A 48 HDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR---AAECNIVVTQPRRISAVS 124 (235)
T ss_dssp HHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC---GGGCEEEEEESSHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC---CCceEEEEeccchHHHHH
Confidence 33444444444556799999999999999999999999999999988888877665421 234589999999999999
Q ss_pred HHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHH-hhCCCH-
Q 010709 210 IEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRM-LDMGFE- 287 (503)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l-~~~~~~- 287 (503)
+++.+.......-+..++....... .....+++|+|+|||+|.+++.. .+.++++||+||||++ .+.+|.
T Consensus 125 ~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~ 196 (235)
T 3llm_A 125 VAERVAFERGEEPGKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLL 196 (235)
T ss_dssp HHHHHHHTTTCCTTSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHH
T ss_pred HHHHHHHHhccccCceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHH
Confidence 9988876653322233332222111 00124588999999999999876 4889999999999985 666666
Q ss_pred HHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHhcCCC
Q 010709 288 PQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDP 325 (503)
Q Consensus 288 ~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~ 325 (503)
..+..++... ++.|+++||||++.+. +.+.+...|
T Consensus 197 ~~l~~i~~~~-~~~~~il~SAT~~~~~--~~~~~~~~p 231 (235)
T 3llm_A 197 VVLRDVVQAY-PEVRIVLMSATIDTSM--FCEYFFNCP 231 (235)
T ss_dssp HHHHHHHHHC-TTSEEEEEECSSCCHH--HHHHTTSCC
T ss_pred HHHHHHHhhC-CCCeEEEEecCCCHHH--HHHHcCCCC
Confidence 3556666655 5789999999998775 444444444
No 83
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.90 E-value=5.9e-23 Score=178.39 Aligned_cols=121 Identities=26% Similarity=0.412 Sum_probs=109.5
Q ss_pred ceEEEEEEcChhh-HHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHH
Q 010709 339 NVIQILEKVSENE-KVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESAL 417 (503)
Q Consensus 339 ~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~ 417 (503)
++.+.+..+.... |...+..++... +.+++||||+++..++.+++.|...++.+..+||++++.+|..++
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~---------~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 73 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSI---------SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIM 73 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHT---------TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhC---------CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHH
Confidence 5677788887776 888888777652 456799999999999999999999999999999999999999999
Q ss_pred HHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 418 RDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 418 ~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
+.|++|+.+|||||+++++|+|+|++++||++|+|++...|.||+||+||.
T Consensus 74 ~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~ 124 (165)
T 1fuk_A 74 KEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRF 124 (165)
T ss_dssp HHHHTTSCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC--
T ss_pred HHHHcCCCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccC
Confidence 999999999999999999999999999999999999999999999999995
No 84
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.90 E-value=5.6e-23 Score=180.35 Aligned_cols=124 Identities=23% Similarity=0.350 Sum_probs=110.4
Q ss_pred CCCceEEEEEEcChhh-HHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHH
Q 010709 336 PTANVIQILEKVSENE-KVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRE 414 (503)
Q Consensus 336 ~~~~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~ 414 (503)
...++.+.+..++... |...+..++.. .+.+++||||+++..++.+++.|...|+.+..+||++++.+|.
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~---------~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~ 74 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGS---------ITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRA 74 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTT---------SCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHH
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHh---------CCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHH
Confidence 3457888898888765 88777776643 2456899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEccCC------CChhHHHHhhCcceee
Q 010709 415 SALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLP------KVLLAASESLCTTSFN 468 (503)
Q Consensus 415 ~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p------~s~~~~~Qr~GR~gR~ 468 (503)
.+++.|++|+.+|||||+++++|+|+|++++||+||+| .+..+|+||+||+||.
T Consensus 75 ~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~ 134 (175)
T 2rb4_A 75 SIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRF 134 (175)
T ss_dssp HHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC---
T ss_pred HHHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccC
Confidence 99999999999999999999999999999999999999 9999999999999995
No 85
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.89 E-value=1.1e-22 Score=183.90 Aligned_cols=120 Identities=33% Similarity=0.400 Sum_probs=110.0
Q ss_pred eEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHH
Q 010709 340 VIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRD 419 (503)
Q Consensus 340 ~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~ 419 (503)
+.+....++...|...+..++... +.+++||||+++..++.+++.|...|+.+..+||++++.+|..+++.
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~---------~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~ 76 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVA---------SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGA 76 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHH---------CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHH
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhC---------CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHH
Confidence 345556677788998888887643 35679999999999999999999999999999999999999999999
Q ss_pred HhcCCCcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 420 FRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 420 f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
|++|+.+|||||+++++|+|+|++++||+||+|++...|+||+||+||.
T Consensus 77 f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~ 125 (212)
T 3eaq_A 77 FRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRA 125 (212)
T ss_dssp HHSSSCCEEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCC
T ss_pred HHCCCCeEEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCC
Confidence 9999999999999999999999999999999999999999999999995
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.89 E-value=2e-22 Score=207.87 Aligned_cols=126 Identities=19% Similarity=0.204 Sum_probs=86.6
Q ss_pred CCCCCCcHHHHHHHHH----HhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHH
Q 010709 139 HEYTRPTSIQAQAMPV----ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 214 (503)
Q Consensus 139 ~~~~~~~~~Q~~~i~~----i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~ 214 (503)
.|| .|+++|.+++.. +..|+++++.+|||+|||++|++|++.. +++++|++||++|+.|+.+.+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-----------~~~~~~~~~t~~l~~q~~~~~ 71 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-----------KKKVLIFTRTHSQLDSIYKNA 71 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-----------TCEEEEEESCHHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-----------CCcEEEEcCCHHHHHHHHHHH
Confidence 456 899999998765 4578899999999999999999998764 578999999999999999888
Q ss_pred HHHhccCCCceEEEEECCccH--------H------------------------HH---------------HHHhhCCCc
Q 010709 215 KALSRSLDSFKTAIVVGGTNI--------A------------------------EQ---------------RSELRGGVS 247 (503)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~--------~------------------------~~---------------~~~~~~~~~ 247 (503)
..+. +++..+.|.... . +. .+.....++
T Consensus 72 ~~l~-----~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~ad 146 (540)
T 2vl7_A 72 KLLG-----LKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKD 146 (540)
T ss_dssp GGGT-----CCEEEC---------------------------------------------------------CTTGGGCS
T ss_pred HhcC-----CcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCC
Confidence 7752 333333221100 0 00 011124579
Q ss_pred EEEECcHHHHHHHHcCCC-------CCCCccEEEecchhHH
Q 010709 248 IVVATPGRFLDHLQQGNT-------SLSRVSFVILDEADRM 281 (503)
Q Consensus 248 Ilv~Tp~~l~~~l~~~~~-------~l~~~~~vViDEaH~l 281 (503)
|+|+|+..|++......+ .+.+..++||||||++
T Consensus 147 iVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl 187 (540)
T 2vl7_A 147 VIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNL 187 (540)
T ss_dssp EEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGG
T ss_pred EEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccH
Confidence 999999999875543221 2456789999999986
No 87
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.88 E-value=4.8e-22 Score=188.15 Aligned_cols=120 Identities=31% Similarity=0.395 Sum_probs=110.6
Q ss_pred eEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHH
Q 010709 340 VIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRD 419 (503)
Q Consensus 340 ~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~ 419 (503)
+.+.+..++...|...+..++... ..+++||||++++.++.+++.|...++.+..+||++++.+|..+++.
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~---------~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~ 73 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVA---------SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGA 73 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHH---------CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHH
T ss_pred eEEEEEECCHHHHHHHHHHHHHhc---------CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHH
Confidence 567788888889999988887653 34679999999999999999999999999999999999999999999
Q ss_pred HhcCCCcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 420 FRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 420 f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
|++|+.+|||||+++++|+|+|++++||+||+|++...|+||+||+||.
T Consensus 74 f~~g~~~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~ 122 (300)
T 3i32_A 74 FRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRA 122 (300)
T ss_dssp HHHTSCCEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC--
T ss_pred hhcCCceEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcC
Confidence 9999999999999999999999999999999999999999999999995
No 88
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.88 E-value=9.1e-23 Score=193.61 Aligned_cols=155 Identities=15% Similarity=0.138 Sum_probs=123.6
Q ss_pred CCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccC
Q 010709 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (503)
Q Consensus 142 ~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~ 221 (503)
..|+++|.++++.++.+++.++++|||+|||+++++++...+... +.++||++|+++|+.|+.+++++++...
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-------~~~~lil~Pt~~L~~q~~~~l~~~~~~~ 184 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY-------EGKILIIVPTTALTTQMADDFVDYRLFS 184 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC-------SSEEEEECSSHHHHHHHHHHHHHHTSCC
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC-------CCeEEEEECCHHHHHHHHHHHHHhcccc
Confidence 379999999999999888899999999999999977766654431 3479999999999999999999987432
Q ss_pred CCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCC
Q 010709 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKH 301 (503)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~ 301 (503)
...+..++++..... ....+.+|+|+||+.+.+. ....+.++++||+||||++. ...+..++..+.+..
T Consensus 185 -~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~----~~~~~~il~~~~~~~ 253 (282)
T 1rif_A 185 -HAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLAT----GKSISSIISGLNNCM 253 (282)
T ss_dssp -GGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCC----HHHHHHHTTTCTTCC
T ss_pred -cceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCC----cccHHHHHHHhhcCC
Confidence 356777777764322 2225689999999987543 22346789999999999986 347888888887889
Q ss_pred cEEEEEeeCCHHH
Q 010709 302 QTLLFSATMPVEI 314 (503)
Q Consensus 302 q~i~~SAT~~~~~ 314 (503)
+++++|||+++..
T Consensus 254 ~~l~lSATp~~~~ 266 (282)
T 1rif_A 254 FKFGLSGSLRDGK 266 (282)
T ss_dssp EEEEECSSCCTTS
T ss_pred eEEEEeCCCCCcc
Confidence 9999999997654
No 89
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.85 E-value=1.8e-19 Score=186.66 Aligned_cols=285 Identities=14% Similarity=0.126 Sum_probs=180.5
Q ss_pred CCcHHHHHHHHHH----hcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q 010709 143 RPTSIQAQAMPVA----LSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (503)
Q Consensus 143 ~~~~~Q~~~i~~i----~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 218 (503)
.|++.|.+++..+ ..|+++++.+|||+|||++|++|++.. +++++|++||++|+.|+.+++..+.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~-----------~~~v~i~~pt~~l~~q~~~~~~~l~ 71 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV-----------KPKVLFVVRTHNEFYPIYRDLTKIR 71 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH-----------CSEEEEEESSGGGHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC-----------CCeEEEEcCCHHHHHHHHHHHHHHh
Confidence 6899999987754 478999999999999999999999972 5789999999999999999998886
Q ss_pred ccCCCceEEEEECCccH---------------------------------HHH------------------HHHhhCCCc
Q 010709 219 RSLDSFKTAIVVGGTNI---------------------------------AEQ------------------RSELRGGVS 247 (503)
Q Consensus 219 ~~~~~~~~~~~~~~~~~---------------------------------~~~------------------~~~~~~~~~ 247 (503)
... ++++.++.|.... ... .+.....++
T Consensus 72 ~~~-~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~ad 150 (551)
T 3crv_A 72 EKR-NITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKAD 150 (551)
T ss_dssp CSS-CCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCS
T ss_pred hhc-CccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCC
Confidence 554 4677766653211 111 122335689
Q ss_pred EEEECcHHHHHHHHcCCCCC-CCccEEEecchhHHhhCC-----------------------------------------
Q 010709 248 IVVATPGRFLDHLQQGNTSL-SRVSFVILDEADRMLDMG----------------------------------------- 285 (503)
Q Consensus 248 Ilv~Tp~~l~~~l~~~~~~l-~~~~~vViDEaH~l~~~~----------------------------------------- 285 (503)
|+|+|++.|++...+..+.+ .+..+|||||||++.+ .
T Consensus 151 IVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~ 229 (551)
T 3crv_A 151 VIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVL 229 (551)
T ss_dssp EEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCC
T ss_pred EEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999988765544333 4678999999998654 1
Q ss_pred --------------CHHHHHHH----------------------------HH----------------------------
Q 010709 286 --------------FEPQIREV----------------------------MQ---------------------------- 295 (503)
Q Consensus 286 --------------~~~~~~~i----------------------------l~---------------------------- 295 (503)
+...+..+ +.
T Consensus 230 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~ 309 (551)
T 3crv_A 230 PDEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLN 309 (551)
T ss_dssp SCSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHG
T ss_pred ccccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHH
Confidence 01111000 00
Q ss_pred hCCCC-CcEEEEEeeCCHHHHHHHHHhcCC-CeEEE--eCCCCCCCCceEEEEEE--cCh------hhHHHHHHHHHHHH
Q 010709 296 NLPDK-HQTLLFSATMPVEIEALAQEYLTD-PVQVK--VGKVSSPTANVIQILEK--VSE------NEKVDRLLALLVEE 363 (503)
Q Consensus 296 ~~~~~-~q~i~~SAT~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~--~~~------~~k~~~l~~~l~~~ 363 (503)
.+... ..+|++|||+.+ ...+.+.+..+ +.... ......+...-...+.. ++. ......+...+.+.
T Consensus 310 ~~~~~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~spf~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l 388 (551)
T 3crv_A 310 LLNDNELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKRVSGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKI 388 (551)
T ss_dssp GGGCTTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSCCSCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHH
T ss_pred HHhccCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCcCCCceEEEEeCCCCCccccCCHHHHHHHHHHHHHH
Confidence 01122 678999999976 33333333222 22210 00011111111122221 111 11233444444433
Q ss_pred HHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEc--cccccCCCCC
Q 010709 364 AFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT--DVASRGLDVM 441 (503)
Q Consensus 364 ~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT--~~~~~Gldip 441 (503)
... .++.+|||+++....+.+++. .+..+..=..+++. .++++.|+.+...||++| ..+.+|||+|
T Consensus 389 ~~~------~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~~---~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~ 456 (551)
T 3crv_A 389 YFQ------AKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSSV---EDLYSAISANNKVLIGSVGKGKLAEGIELR 456 (551)
T ss_dssp HHH------CSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCCH---HHHHHHTTSSSSCEEEEESSCCSCCSSCCE
T ss_pred HHh------CCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCCH---HHHHHHHHhcCCeEEEEEecceeccccccc
Confidence 221 345799999999999998873 34444433334453 456777754445899998 6999999999
Q ss_pred ---C--CCEEEEccCCC
Q 010709 442 ---G--VAHVVNLDLPK 453 (503)
Q Consensus 442 ---~--v~~VI~~~~p~ 453 (503)
+ ++.||..++|-
T Consensus 457 d~~g~~l~~viI~~lPf 473 (551)
T 3crv_A 457 NNDRSLISDVVIVGIPY 473 (551)
T ss_dssp ETTEESEEEEEEESCCC
T ss_pred ccCCcceeEEEEEcCCC
Confidence 3 78999999874
No 90
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.75 E-value=5.8e-23 Score=179.31 Aligned_cols=121 Identities=31% Similarity=0.463 Sum_probs=108.0
Q ss_pred ceEEEEEEcCh-hhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHH
Q 010709 339 NVIQILEKVSE-NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESAL 417 (503)
Q Consensus 339 ~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~ 417 (503)
++.+.+..++. ..|...+..++... +.+++||||+++..++.+++.|...++.+..+||++++.+|..++
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~---------~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~ 73 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQP---------EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAI 73 (170)
Confidence 34556666666 67777776666542 335799999999999999999999999999999999999999999
Q ss_pred HHHhcCCCcEEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 418 RDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 418 ~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
+.|++|+.+|||||+++++|+|+|++++||++|+|++...|+||+||+||.
T Consensus 74 ~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~ 124 (170)
T 2yjt_D 74 KRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARA 124 (170)
Confidence 999999999999999999999999999999999999999999999999995
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.81 E-value=1.5e-19 Score=166.17 Aligned_cols=139 Identities=19% Similarity=0.144 Sum_probs=109.5
Q ss_pred CCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccC
Q 010709 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (503)
Q Consensus 142 ~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~ 221 (503)
..|+++|.+++..+++++++++++|||+|||++++.++... +.+++|++|+++|+.|+.+.++++
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----------~~~~liv~P~~~L~~q~~~~~~~~---- 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF---- 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-----------CSCEEEEESSHHHHHHHHHHHGGG----
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHHHhC----
Confidence 48999999999999999899999999999999887665432 456999999999999999999884
Q ss_pred CCce-EEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhCCCC
Q 010709 222 DSFK-TAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDK 300 (503)
Q Consensus 222 ~~~~-~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~ 300 (503)
++. +..+.|+.. ...+|+|+|++.+...... ...++++|||||||++.+.. +..++..++ .
T Consensus 157 -~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~----~~~i~~~~~-~ 218 (237)
T 2fz4_A 157 -GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAES----YVQIAQMSI-A 218 (237)
T ss_dssp -CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTT----HHHHHHTCC-C
T ss_pred -CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChH----HHHHHHhcc-C
Confidence 355 666666653 3579999999999776653 12468999999999987654 345555555 5
Q ss_pred CcEEEEEeeCCHH
Q 010709 301 HQTLLFSATMPVE 313 (503)
Q Consensus 301 ~q~i~~SAT~~~~ 313 (503)
.+++++|||+++.
T Consensus 219 ~~~l~LSATp~r~ 231 (237)
T 2fz4_A 219 PFRLGLTATFERE 231 (237)
T ss_dssp SEEEEEEESCC--
T ss_pred CEEEEEecCCCCC
Confidence 6789999999754
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.77 E-value=4.1e-17 Score=170.18 Aligned_cols=81 Identities=22% Similarity=0.227 Sum_probs=66.6
Q ss_pred CCcHHHHHHHHH----HhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q 010709 143 RPTSIQAQAMPV----ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (503)
Q Consensus 143 ~~~~~Q~~~i~~----i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 218 (503)
+|++.|.+.+.. +.+|+++++.||||+|||++|++|++.++... +++++|++||++++.|+.+.++.+.
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~-------~~kvli~t~T~~l~~Qi~~el~~l~ 75 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER-------KLKVLYLVRTNSQEEQVIKELRSLS 75 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH-------TCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc-------CCeEEEECCCHHHHHHHHHHHHHHh
Confidence 589999998865 45789999999999999999999999987653 5789999999999999999999887
Q ss_pred ccCCCceEEEEEC
Q 010709 219 RSLDSFKTAIVVG 231 (503)
Q Consensus 219 ~~~~~~~~~~~~~ 231 (503)
... .+++..+.|
T Consensus 76 ~~~-~~~~~~l~g 87 (620)
T 4a15_A 76 STM-KIRAIPMQG 87 (620)
T ss_dssp HHS-CCCEEECCC
T ss_pred hcc-CeEEEEEEC
Confidence 654 455555554
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.70 E-value=6.5e-17 Score=151.16 Aligned_cols=114 Identities=13% Similarity=0.144 Sum_probs=93.4
Q ss_pred ChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHC-CCeEEEEcCCCCHHHHHHHHHHHhcC-CC
Q 010709 348 SENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-GLHAVALHGGRNQSDRESALRDFRNG-ST 425 (503)
Q Consensus 348 ~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~-~~~v~~lh~~~~~~~r~~~~~~f~~g-~~ 425 (503)
....|+..+..++..... ...++||||++...++.+.+.|... |+.+..+||++++.+|.++++.|++| +.
T Consensus 93 ~~s~K~~~L~~ll~~~~~-------~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~ 165 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALD-------EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSV 165 (271)
T ss_dssp TTCHHHHHHHHHHHHHHH-------TTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTC
T ss_pred ccCHHHHHHHHHHHHHHh-------CCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCC
Confidence 456788888888776532 2357999999999999999999885 99999999999999999999999998 67
Q ss_pred c-EEEEccccccCCCCCCCCEEEEccCCCChhHHHHhhCcceee
Q 010709 426 N-ILVATDVASRGLDVMGVAHVVNLDLPKVLLAASESLCTTSFN 468 (503)
Q Consensus 426 ~-vLvaT~~~~~Gldip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 468 (503)
+ +|++|+++++|+|++++++||+||+|+++..|.||+||++|.
T Consensus 166 ~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~ 209 (271)
T 1z5z_A 166 KFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRI 209 (271)
T ss_dssp CEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC----------
T ss_pred CEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhcccc
Confidence 7 789999999999999999999999999999999999999984
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.89 E-value=4.9e-09 Score=109.23 Aligned_cols=145 Identities=21% Similarity=0.292 Sum_probs=88.9
Q ss_pred cHHHHHHHHHHhcCCCeEEEccCCCchh--HHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCC
Q 010709 145 TSIQAQAMPVALSGRDLLGCAETGSGKT--AAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (503)
Q Consensus 145 ~~~Q~~~i~~i~~~~~vii~~~TGsGKT--l~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~ 222 (503)
.+.|.++++.++.++.+++.|++|+||| +.++++.+..... ..+.++++++||..+|.++.+.+........
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~------~~~~~vll~APTg~AA~~L~e~~~~~~~~l~ 224 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD------GERCRIRLAAPTGKAAARLTESLGKALRQLP 224 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS------SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh------cCCCeEEEEeCChhHHHHHHHHHHHHHhcCC
Confidence 7899999999999999999999999999 4455555443211 2356799999999999999888876654331
Q ss_pred CceEEEEECCccHHHHHHHhhCCC-cEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCC
Q 010709 223 SFKTAIVVGGTNIAEQRSELRGGV-SIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKH 301 (503)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~-~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~ 301 (503)
+..... .+... ..... .++-.+|+.. . +.........+++||||||+ |++ ...+..++..++...
T Consensus 225 -l~~~~~-~~~~~------~~~Tih~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l~~~~ 290 (608)
T 1w36_D 225 -LTDEQK-KRIPE------DASTLHRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEAS-MID---LPMMSRLIDALPDHA 290 (608)
T ss_dssp -CCSCCC-CSCSC------CCBTTTSCC-------------CTTSCCSCSEEEECSGG-GCB---HHHHHHHHHTCCTTC
T ss_pred -CCHHHH-hccch------hhhhhHhhhccCCCch-H-HHhccCCCCCCCEEEEechh-hCC---HHHHHHHHHhCCCCC
Confidence 110000 00000 00001 1111222221 0 11112222378999999999 543 556788899998889
Q ss_pred cEEEEEee
Q 010709 302 QTLLFSAT 309 (503)
Q Consensus 302 q~i~~SAT 309 (503)
|+|++.-.
T Consensus 291 ~liLvGD~ 298 (608)
T 1w36_D 291 RVIFLGDR 298 (608)
T ss_dssp EEEEEECT
T ss_pred EEEEEcch
Confidence 98887644
No 95
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.43 E-value=1.1e-06 Score=90.55 Aligned_cols=126 Identities=17% Similarity=0.202 Sum_probs=80.8
Q ss_pred CCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccC
Q 010709 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (503)
Q Consensus 142 ~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~ 221 (503)
..+++.|.+++..++.++.++|.|+.|+|||+.. ..++..+... +.++++++||...+..+.+.+.
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~~-------g~~Vl~~ApT~~Aa~~L~e~~~------ 253 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAESL-------GLEVGLCAPTGKAARRLGEVTG------ 253 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHHT------
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHhc-------CCeEEEecCcHHHHHHhHhhhc------
Confidence 3578999999999998889999999999999753 3344443332 5679999999988877655431
Q ss_pred CCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCC
Q 010709 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKH 301 (503)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~ 301 (503)
.....+ . .+. .. .+.. ..........+++|||||++.+. ...+..++..++...
T Consensus 254 --~~a~Ti------h----~ll---~~---~~~~----~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~~~ 307 (574)
T 3e1s_A 254 --RTASTV------H----RLL---GY---GPQG----FRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPPGA 307 (574)
T ss_dssp --SCEEEH------H----HHT---TE---ETTE----ESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCTTC
T ss_pred --ccHHHH------H----HHH---cC---Ccch----hhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCcCCC
Confidence 111100 0 000 00 0000 01112234468999999999653 456777888888777
Q ss_pred cEEEEE
Q 010709 302 QTLLFS 307 (503)
Q Consensus 302 q~i~~S 307 (503)
+++++.
T Consensus 308 ~lilvG 313 (574)
T 3e1s_A 308 RVLLVG 313 (574)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 777654
No 96
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.40 E-value=7.9e-07 Score=93.62 Aligned_cols=69 Identities=25% Similarity=0.314 Sum_probs=55.9
Q ss_pred CCCcHHHHHHHHHHhcCCC-eEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q 010709 142 TRPTSIQAQAMPVALSGRD-LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (503)
Q Consensus 142 ~~~~~~Q~~~i~~i~~~~~-vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 218 (503)
..+.+-|.+|+..++..++ .||.||+|+|||.+. +-++.++... +.++|+++||...+.++.+.+....
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti-~~~I~~l~~~-------~~~ILv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTV-VEIILQAVKQ-------GLKVLCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHH-HHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHH-HHHHHHHHhC-------CCeEEEEcCchHHHHHHHHHHHhcC
Confidence 3578899999999987776 899999999999875 4455555553 5789999999999999988886543
No 97
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.37 E-value=1.5e-06 Score=87.58 Aligned_cols=138 Identities=12% Similarity=0.107 Sum_probs=80.5
Q ss_pred HHHCCCCCCcHHHHHHHHHHhc----CC-CeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHH
Q 010709 136 IEFHEYTRPTSIQAQAMPVALS----GR-DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI 210 (503)
Q Consensus 136 l~~~~~~~~~~~Q~~~i~~i~~----~~-~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~ 210 (503)
.....|..+++-|.+++..++. ++ .++|.|+.|+|||... ..++..+...+ ...+++++||...+..+
T Consensus 18 ~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~------~~~il~~a~T~~Aa~~l 90 (459)
T 3upu_A 18 GSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTG------ETGIILAAPTHAAKKIL 90 (459)
T ss_dssp ---CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTT------CCCEEEEESSHHHHHHH
T ss_pred cCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcC------CceEEEecCcHHHHHHH
Confidence 3456788899999999997753 24 7999999999999754 44555555531 13689999999887766
Q ss_pred HHHHHHHhccCCCceEEEEECCccHHHHHHHh--hCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHH
Q 010709 211 EKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL--RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEP 288 (503)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~ 288 (503)
.+.+. .....++ ...... .......+.. .....+..+++|||||++.+. ..
T Consensus 91 ~~~~~--------~~~~T~h------~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~iiiDE~~~~~----~~ 143 (459)
T 3upu_A 91 SKLSG--------KEASTIH------SILKINPVTYEENVLFEQ---------KEVPDLAKCRVLICDEVSMYD----RK 143 (459)
T ss_dssp HHHHS--------SCEEEHH------HHHTEEEEECSSCEEEEE---------CSCCCCSSCSEEEESCGGGCC----HH
T ss_pred Hhhhc--------cchhhHH------HHhccCcccccccchhcc---------cccccccCCCEEEEECchhCC----HH
Confidence 55441 1111100 000000 0000001100 112345678999999999542 34
Q ss_pred HHHHHHHhCCCCCcEEEEE
Q 010709 289 QIREVMQNLPDKHQTLLFS 307 (503)
Q Consensus 289 ~~~~il~~~~~~~q~i~~S 307 (503)
.+..++..++...+++++.
T Consensus 144 ~~~~l~~~~~~~~~~~~vG 162 (459)
T 3upu_A 144 LFKILLSTIPPWCTIIGIG 162 (459)
T ss_dssp HHHHHHHHSCTTCEEEEEE
T ss_pred HHHHHHHhccCCCEEEEEC
Confidence 5666666666556555554
No 98
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.24 E-value=8.1e-05 Score=78.48 Aligned_cols=71 Identities=20% Similarity=0.211 Sum_probs=54.2
Q ss_pred CCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q 010709 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (503)
Q Consensus 142 ~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 218 (503)
..+++-|.+++.. .+..++|.|+.|||||.+. +--+.+++... +....++|++++|+..+.++.+++.++.
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l-~~ri~~l~~~~---~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVL-VHRIAWLMSVE---NCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHH-HHHHHHHHHTS---CCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHH-HHHHHHHHHhC---CCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 4688999999973 3567999999999999865 33444555432 1124579999999999999999998775
No 99
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.23 E-value=1.3e-05 Score=85.84 Aligned_cols=70 Identities=21% Similarity=0.255 Sum_probs=56.2
Q ss_pred CCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHH
Q 010709 141 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (503)
Q Consensus 141 ~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 217 (503)
+..+++.|.+|+..++.+..++|.||+|+|||... ..++..+... .+.++|+++||...+.++.+.+.+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i-~~~i~~l~~~------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTS-ATIVYHLSKI------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHH-HHHHHHHHHH------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHH-HHHHHHHHhC------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 45688999999999988777999999999999864 3444444432 1467999999999999999988765
No 100
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.22 E-value=7.6e-06 Score=85.62 Aligned_cols=70 Identities=21% Similarity=0.210 Sum_probs=56.1
Q ss_pred CCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHH
Q 010709 141 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (503)
Q Consensus 141 ~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 217 (503)
...+++.|.+|+..++.+..++|.||+|+|||... ..++..+... .+.++++++||...+.++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~-~~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHH-HHHHHHHHTS------SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHH-HHHHHHHHHc------CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 45689999999999888777999999999999864 4455554432 2567999999999999998887654
No 101
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.17 E-value=1.6e-05 Score=85.00 Aligned_cols=70 Identities=21% Similarity=0.210 Sum_probs=56.1
Q ss_pred CCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHH
Q 010709 141 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (503)
Q Consensus 141 ~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 217 (503)
...+++.|.+|+..++.+..++|.||+|+|||... ..++..+... .+.++++++||...+.++.+.+...
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti-~~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHH-HHHHHHHHTT------CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHH-HHHHHHHHHc------CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 45689999999999988777999999999999864 4455555442 2567999999999999998887654
No 102
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.43 E-value=0.00092 Score=64.76 Aligned_cols=73 Identities=15% Similarity=0.118 Sum_probs=55.7
Q ss_pred CCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccC
Q 010709 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (503)
Q Consensus 143 ~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~ 221 (503)
.++|+|...+..+...+-+++..+-+.|||......++..+... .+..+++++|++.-|..+.+.++.+....
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~------~g~~v~~vA~t~~qA~~vf~~i~~mi~~~ 235 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS------SSCEEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 68999999998775556689999999999987655444333332 25679999999999988888888776543
No 103
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.33 E-value=0.00047 Score=67.66 Aligned_cols=107 Identities=21% Similarity=0.188 Sum_probs=63.1
Q ss_pred CeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHH
Q 010709 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR 239 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (503)
-.++.|+.|+|||.... .... ....+|++||++++..+.+.+.+.+..
T Consensus 163 v~~I~G~aGsGKTt~I~-----~~~~--------~~~~lVlTpT~~aa~~l~~kl~~~~~~------------------- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEIL-----SRVN--------FEEDLILVPGRQAAEMIRRRANASGII------------------- 210 (446)
T ss_dssp EEEEEECTTSCHHHHHH-----HHCC--------TTTCEEEESCHHHHHHHHHHHTTTSCC-------------------
T ss_pred EEEEEcCCCCCHHHHHH-----HHhc--------cCCeEEEeCCHHHHHHHHHHhhhcCcc-------------------
Confidence 37899999999997431 1111 134799999999998888776432100
Q ss_pred HHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEee
Q 010709 240 SELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 309 (503)
Q Consensus 240 ~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 309 (503)
.....-|.|.+.++. .......-.+++||||||- |++. ..+..++...+. .+++++.-+
T Consensus 211 ----~~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~s-m~~~---~~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 211 ----VATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGL-MLHT---GCVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp ----CCCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGG-GSCH---HHHHHHHHHTTC-SEEEEEECT
T ss_pred ----ccccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcc-cCCH---HHHHHHHHhCCC-CEEEEecCc
Confidence 012233678776653 1112222348999999998 4332 234445555544 556655443
No 104
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.19 E-value=0.0013 Score=61.57 Aligned_cols=102 Identities=13% Similarity=0.025 Sum_probs=73.7
Q ss_pred hhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEE
Q 010709 349 ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNIL 428 (503)
Q Consensus 349 ~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vL 428 (503)
...|+..|-+++.... ..+.++|||++..+..+-+.+++...++....+.|.....++ + -.++...|.
T Consensus 107 ~SGKf~~L~~LL~~l~-------~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~-k----~~~~~~~i~ 174 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQ-------EYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAA-A----ANDFSCTVH 174 (328)
T ss_dssp TCHHHHHHHHHHHHHT-------TSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEE
T ss_pred cCccHHHHHHHHHHHH-------hCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhh-h----cccCCceEE
Confidence 4567776666665543 234579999999999999999999999999999998554322 1 124556666
Q ss_pred EEccccccCCC-----CCCCCEEEEccCCCChhH-HHHhh
Q 010709 429 VATDVASRGLD-----VMGVAHVVNLDLPKVLLA-ASESL 462 (503)
Q Consensus 429 vaT~~~~~Gld-----ip~v~~VI~~~~p~s~~~-~~Qr~ 462 (503)
+.|..+.-|+| +...+.||.||..+++.. .+|.+
T Consensus 175 Lltsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~ 214 (328)
T 3hgt_A 175 LFSSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYL 214 (328)
T ss_dssp EEESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHH
T ss_pred EEECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHH
Confidence 66777777776 678999999999998866 36644
No 105
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.11 E-value=0.00026 Score=61.40 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=26.7
Q ss_pred CCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccH
Q 010709 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR 204 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr 204 (503)
|+-.++.|++|+|||+..+ -++..+... +.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll-~~~~~~~~~-------g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELL-SFVEIYKLG-------KKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHH-HHHHHHHHT-------TCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHH-HHHHHHHHC-------CCeEEEEeecc
Confidence 4557899999999998653 334333332 46788888884
No 106
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.10 E-value=0.00034 Score=62.41 Aligned_cols=90 Identities=16% Similarity=0.137 Sum_probs=51.3
Q ss_pred CCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHH
Q 010709 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE 237 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (503)
|.-+++.|++|+|||+.. +-++..+... +.+++++.|...-- . ...+...+ ++.
T Consensus 12 G~i~litG~mGsGKTT~l-l~~~~r~~~~-------g~kVli~~~~~d~r---~--~~~i~srl-G~~------------ 65 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAEL-IRRLHRLEYA-------DVKYLVFKPKIDTR---S--IRNIQSRT-GTS------------ 65 (223)
T ss_dssp CEEEEEECSTTSCHHHHH-HHHHHHHHHT-------TCCEEEEEECCCGG---G--CSSCCCCC-CCS------------
T ss_pred cEEEEEECCCCCcHHHHH-HHHHHHHHhc-------CCEEEEEEeccCch---H--HHHHHHhc-CCC------------
Confidence 445889999999999865 4344444432 56788888765210 0 00111111 000
Q ss_pred HHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHH
Q 010709 238 QRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRM 281 (503)
Q Consensus 238 ~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l 281 (503)
-..+.+.+...++..+... ..-.++++|||||++.+
T Consensus 66 -------~~~~~~~~~~~i~~~i~~~-~~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 66 -------LPSVEVESAPEILNYIMSN-SFNDETKVIGIDEVQFF 101 (223)
T ss_dssp -------SCCEEESSTHHHHHHHHST-TSCTTCCEEEECSGGGS
T ss_pred -------ccccccCCHHHHHHHHHHH-hhCCCCCEEEEecCccC
Confidence 0123345666676666542 23346899999999964
No 107
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=97.04 E-value=0.0027 Score=67.49 Aligned_cols=109 Identities=21% Similarity=0.216 Sum_probs=71.8
Q ss_pred CCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccC
Q 010709 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (503)
Q Consensus 142 ~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~ 221 (503)
..+++-|.+++.. .+..++|.|+.|||||.+. +--+.+++... +.....+|+|+.|+..|.++.+++..+....
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL-~~ri~~ll~~~---~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~ 83 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVL-THRIAYLMAEK---HVAPWNILAITFTNKAAREMRERVQSLLGGA 83 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHH-HHHHHHHHHTT---CCCGGGEEEEESSHHHHHHHHHHHHHHHGGG
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHH-HHHHHHHHHhc---CCCHHHeEEEeccHHHHHHHHHHHHHHhccc
Confidence 4689999999876 3567999999999999865 33344444431 1124679999999999999999998775220
Q ss_pred CCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCC-CCC-CccEEEecchh
Q 010709 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT-SLS-RVSFVILDEAD 279 (503)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~-~l~-~~~~vViDEaH 279 (503)
...+-|+|...+...+.+... .+. .-.+-|+|+.+
T Consensus 84 -----------------------~~~~~v~Tfhs~~~~ilr~~~~~~g~~~~f~i~d~~d 120 (724)
T 1pjr_A 84 -----------------------AEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTD 120 (724)
T ss_dssp -----------------------GTTSEEEEHHHHHHHHHHHHGGGGTCCTTCEECCHHH
T ss_pred -----------------------ccCcEEeeHHHHHHHHHHHHHHHhCCCCCCEECCHHH
Confidence 023567888777544433111 110 12356778766
No 108
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.01 E-value=0.0018 Score=57.41 Aligned_cols=39 Identities=15% Similarity=0.089 Sum_probs=27.9
Q ss_pred CCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccH
Q 010709 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR 204 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr 204 (503)
|+=.+++|++|+|||+..+- .+..... .+.+++++.|..
T Consensus 19 g~l~v~~G~MgsGKTT~lL~-~~~r~~~-------~g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMR-RVRRFQI-------AQYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHH-HHHHHHT-------TTCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHHHH-HHHHHHH-------CCCeEEEEeecC
Confidence 45578999999999987543 3433333 267799999875
No 109
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.01 E-value=0.0014 Score=56.49 Aligned_cols=19 Identities=32% Similarity=0.379 Sum_probs=16.2
Q ss_pred cCCCeEEEccCCCchhHHh
Q 010709 157 SGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~ 175 (503)
.|+.+++.||+|+|||+.+
T Consensus 37 ~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp GCCEEEECCSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677999999999999854
No 110
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.00 E-value=0.00094 Score=58.69 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=27.0
Q ss_pred CCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHH
Q 010709 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE 205 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~ 205 (503)
|+=.+++|++|+|||+..+ -.+...... +.+++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL-~~a~r~~~~-------g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELI-RRVRRTQFA-------KQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHH-HHHHHHHHT-------TCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHH-HHHHHHHHC-------CCEEEEEEeccC
Confidence 3346789999999998754 344443432 577999998763
No 111
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.97 E-value=0.0062 Score=63.10 Aligned_cols=73 Identities=15% Similarity=0.118 Sum_probs=56.5
Q ss_pred CCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccC
Q 010709 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (503)
Q Consensus 143 ~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~ 221 (503)
.++++|...+..+...+.+++.++-|.|||......++..+... .+..++++.|++..|..+.+.++.+....
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~------~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS------SSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC------CCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 57999999998775556799999999999987654444443332 24579999999999999988888877554
No 112
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.78 E-value=0.0015 Score=57.22 Aligned_cols=40 Identities=18% Similarity=0.163 Sum_probs=27.1
Q ss_pred CCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHH
Q 010709 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE 205 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~ 205 (503)
|.-.+++|++|+|||+.. +-.+...... +.+++++.|...
T Consensus 28 G~I~vitG~M~sGKTT~L-lr~~~r~~~~-------g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEEL-IRRLRRGIYA-------KQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHH-HHHHHHHHHT-------TCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHH-HHHHHHHHHc-------CCceEEEEeccC
Confidence 445789999999999865 3344444332 567899999753
No 113
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.68 E-value=0.00072 Score=58.81 Aligned_cols=39 Identities=21% Similarity=0.148 Sum_probs=27.6
Q ss_pred CCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccH
Q 010709 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR 204 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr 204 (503)
|+=.++.|++|+|||+.. +-++...... +.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~l-l~~a~r~~~~-------g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEEL-IRRIRRAKIA-------KQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHH-HHHHHHHHHT-------TCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHH-HHHHHHHHHC-------CCEEEEEEecc
Confidence 445789999999999865 4444444432 57799999884
No 114
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.0078 Score=56.66 Aligned_cols=25 Identities=8% Similarity=-0.036 Sum_probs=18.3
Q ss_pred CCCeEEEccCCCchhHHhHHHHHHHH
Q 010709 158 GRDLLGCAETGSGKTAAFTIPMIQHC 183 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~~lp~l~~~ 183 (503)
+.++++.||+|+|||++. -.++..+
T Consensus 45 ~~~lli~GpPGTGKT~~v-~~v~~~L 69 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLV-NDVMDEL 69 (318)
T ss_dssp CCEEEEECCCSHHHHHHH-HHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHH
Confidence 456999999999999865 3344444
No 115
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.59 E-value=0.0066 Score=52.39 Aligned_cols=38 Identities=16% Similarity=0.109 Sum_probs=26.4
Q ss_pred CCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccc
Q 010709 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPT 203 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Pt 203 (503)
++=.++.|++|+|||+-. +-.+...... +.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~L-l~~i~n~~~~-------~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTEL-MRRVRRFQIA-------QYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHH-HHHHHHHHHT-------TCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHH-HHHHHHHHHc-------CCeEEEEccc
Confidence 445889999999999654 3344433332 4678999887
No 116
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.52 E-value=0.00081 Score=56.05 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=15.9
Q ss_pred cCCCeEEEccCCCchhHH
Q 010709 157 SGRDLLGCAETGSGKTAA 174 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~ 174 (503)
.++.+++.||+|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577899999999999974
No 117
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.47 E-value=0.0094 Score=56.62 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=15.2
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
++.+++.||+|+|||..+
T Consensus 37 ~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp CSSEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 357999999999999854
No 118
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.37 E-value=0.049 Score=50.11 Aligned_cols=17 Identities=35% Similarity=0.178 Sum_probs=14.6
Q ss_pred CCeEEEccCCCchhHHh
Q 010709 159 RDLLGCAETGSGKTAAF 175 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~ 175 (503)
..+++.||+|+|||..+
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 35999999999999754
No 119
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.32 E-value=0.0025 Score=57.53 Aligned_cols=19 Identities=16% Similarity=0.135 Sum_probs=15.8
Q ss_pred cCCCeEEEccCCCchhHHh
Q 010709 157 SGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~ 175 (503)
.++.+++.||+|+|||..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3567999999999999743
No 120
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.30 E-value=0.0073 Score=62.33 Aligned_cols=112 Identities=21% Similarity=0.329 Sum_probs=73.1
Q ss_pred CCcHHHHHHHHHHhc--CCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhcc
Q 010709 143 RPTSIQAQAMPVALS--GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (503)
Q Consensus 143 ~~~~~Q~~~i~~i~~--~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~ 220 (503)
.+|.-|.+++..+.. ....++.|+-|.|||.+. -++..... ..++|++|+.+-+..+.+ +...
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~l--G~~~a~~~---------~~~~vtAP~~~a~~~l~~----~~~~ 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALA--GQLISRIA---------GRAIVTAPAKASTDVLAQ----FAGE 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHH--HHHHHHSS---------SCEEEECSSCCSCHHHHH----HHGG
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHH--HHHHHHHH---------hCcEEECCCHHHHHHHHH----HhhC
Confidence 689999999998876 334899999999999643 33322221 236899999977654332 2210
Q ss_pred CCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHhCCCC
Q 010709 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDK 300 (503)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~ 300 (503)
.|-+..|+.+.. ...+.++||||||=.+- .+.+.+++...+
T Consensus 240 --------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp----~pll~~ll~~~~-- 280 (671)
T 2zpa_A 240 --------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAIP----APLLHQLVSRFP-- 280 (671)
T ss_dssp --------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSC----HHHHHHHHTTSS--
T ss_pred --------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcCC----HHHHHHHHhhCC--
Confidence 133446655431 23458999999997542 566777776443
Q ss_pred CcEEEEEeeC
Q 010709 301 HQTLLFSATM 310 (503)
Q Consensus 301 ~q~i~~SAT~ 310 (503)
.++||.|+
T Consensus 281 --~v~~~tTv 288 (671)
T 2zpa_A 281 --RTLLTTTV 288 (671)
T ss_dssp --EEEEEEEB
T ss_pred --eEEEEecC
Confidence 57888887
No 121
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.25 E-value=0.0071 Score=63.84 Aligned_cols=71 Identities=24% Similarity=0.164 Sum_probs=52.8
Q ss_pred CCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhc
Q 010709 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (503)
Q Consensus 143 ~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~ 219 (503)
.+++-|.+++.. .+..++|.|+.|||||.+..- -+.+++... +....++|+|+.|+..|.++.+++.....
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~-ri~~ll~~~---~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITN-KIAHLIRGC---GYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHH-HHHHHHHHH---CCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHH-HHHHHHHhc---CCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 468889999975 366799999999999986533 333444321 11246799999999999999999987753
No 122
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.23 E-value=0.1 Score=44.59 Aligned_cols=17 Identities=35% Similarity=0.399 Sum_probs=14.7
Q ss_pred CCeEEEccCCCchhHHh
Q 010709 159 RDLLGCAETGSGKTAAF 175 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~ 175 (503)
+.+++.||+|+|||..+
T Consensus 44 ~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CceEEECCCCCCHHHHH
Confidence 56999999999999754
No 123
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.22 E-value=0.014 Score=57.42 Aligned_cols=130 Identities=16% Similarity=0.178 Sum_probs=69.3
Q ss_pred CeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc--ccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHH
Q 010709 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA--PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE 237 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~--Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (503)
.++++|++|+|||+... .+...+.. .+.+++++. +.|.-+. +.+..++... ++.+.....+.
T Consensus 99 vI~lvG~~GsGKTTt~~--kLA~~l~~------~G~kVllv~~D~~r~~a~---eqL~~~~~~~-gv~~~~~~~~~---- 162 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAG--KLAYFYKK------RGYKVGLVAADVYRPAAY---DQLLQLGNQI-GVQVYGEPNNQ---- 162 (433)
T ss_dssp EEEECCCTTSCHHHHHH--HHHHHHHH------TTCCEEEEEECCSCHHHH---HHHHHHHHTT-TCCEECCTTCS----
T ss_pred EEEEECCCCCCHHHHHH--HHHHHHHH------cCCeEEEEecCccchhHH---HHHHHHHHhc-CCceeeccccC----
Confidence 48899999999998542 33333332 245566655 4444332 2333333322 23222111111
Q ss_pred HHHHhhCCCcEEEECcHHH-HHHHHcCCCCCCCccEEEecchhHHh---hCCCHHHHHHHHHhCCCCCcEEEEEeeCCHH
Q 010709 238 QRSELRGGVSIVVATPGRF-LDHLQQGNTSLSRVSFVILDEADRML---DMGFEPQIREVMQNLPDKHQTLLFSATMPVE 313 (503)
Q Consensus 238 ~~~~~~~~~~Ilv~Tp~~l-~~~l~~~~~~l~~~~~vViDEaH~l~---~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~ 313 (503)
.|..+ ...+.. ....++++||||++-++. +..+...+..+.....++.-++.++|+...+
T Consensus 163 --------------dp~~i~~~al~~--a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~ 226 (433)
T 3kl4_A 163 --------------NPIEIAKKGVDI--FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK 226 (433)
T ss_dssp --------------CHHHHHHHHHHH--TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG
T ss_pred --------------CHHHHHHHHHHH--HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH
Confidence 11111 122221 223578999999997543 2234566666766666666677888887665
Q ss_pred HHHHHHHh
Q 010709 314 IEALAQEY 321 (503)
Q Consensus 314 ~~~~~~~~ 321 (503)
....+..|
T Consensus 227 a~~~a~~f 234 (433)
T 3kl4_A 227 AYDLASRF 234 (433)
T ss_dssp GHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 124
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.16 E-value=0.035 Score=52.92 Aligned_cols=32 Identities=25% Similarity=0.180 Sum_probs=23.5
Q ss_pred CcHHHHHHHHHHh----cCC--C-eEEEccCCCchhHHh
Q 010709 144 PTSIQAQAMPVAL----SGR--D-LLGCAETGSGKTAAF 175 (503)
Q Consensus 144 ~~~~Q~~~i~~i~----~~~--~-vii~~~TGsGKTl~~ 175 (503)
.+|+|.+++..+. +|+ + +++.||.|+|||..+
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a 41 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALI 41 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHH
Confidence 3677777776544 343 3 899999999999865
No 125
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.11 E-value=0.048 Score=47.98 Aligned_cols=40 Identities=20% Similarity=0.306 Sum_probs=25.8
Q ss_pred CCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEe
Q 010709 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSA 308 (503)
Q Consensus 268 ~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SA 308 (503)
.+..+|||||+|.+... ....+..++...+....+|+.+.
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEeC
Confidence 45679999999976432 34456666666666665555443
No 126
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.96 E-value=0.026 Score=48.20 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=15.1
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
.+++++.||+|+|||..+
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 356999999999999754
No 127
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.91 E-value=0.026 Score=48.76 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=36.5
Q ss_pred CCCccEEEecchhHHhhCC--CHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHH
Q 010709 267 LSRVSFVILDEADRMLDMG--FEPQIREVMQNLPDKHQTLLFSATMPVEIEALA 318 (503)
Q Consensus 267 l~~~~~vViDEaH~l~~~~--~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~ 318 (503)
-.++++||+||+-..+..+ -...+..++...+...-+|+.+--.|+.+.+.+
T Consensus 118 ~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~A 171 (196)
T 1g5t_A 118 DPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLA 171 (196)
T ss_dssp CTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHC
T ss_pred cCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhC
Confidence 3679999999998665554 345677777777777766666666677766544
No 128
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.88 E-value=0.011 Score=57.40 Aligned_cols=18 Identities=39% Similarity=0.355 Sum_probs=15.3
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
++.+++.||+|+|||..+
T Consensus 44 ~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCEEECBCTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 457999999999999754
No 129
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.84 E-value=0.04 Score=51.08 Aligned_cols=53 Identities=17% Similarity=0.135 Sum_probs=28.9
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHH--hcCCCeEEEccCCCchhHHh
Q 010709 121 ESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVA--LSGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 121 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i--~~~~~vii~~~TGsGKTl~~ 175 (503)
..|+++.-.+...+.+...-. .+ -...+.+... ...+.+++.||+|+|||..+
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVE-LP-LKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTH-HH-HHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHH-HH-hhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 457777655666666543210 00 0001111111 23456999999999999743
No 130
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.83 E-value=0.02 Score=53.83 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=14.7
Q ss_pred CCeEEEccCCCchhHHh
Q 010709 159 RDLLGCAETGSGKTAAF 175 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~ 175 (503)
.++++.||+|+|||..+
T Consensus 68 ~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46999999999999854
No 131
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.79 E-value=0.017 Score=65.15 Aligned_cols=71 Identities=30% Similarity=0.287 Sum_probs=52.9
Q ss_pred CCcHHHHHHHHHHhcCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHH
Q 010709 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (503)
Q Consensus 143 ~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 217 (503)
.+++-|.+++..- +++++|.|..|||||.+.+--++..+.... ......++|++++|+..|..+.+++...
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~--~~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEE--NPIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSS--SCCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCC--CCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 5789999999764 779999999999999875444444333211 1113457999999999999999888764
No 132
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.71 E-value=0.039 Score=48.16 Aligned_cols=17 Identities=29% Similarity=0.317 Sum_probs=14.9
Q ss_pred CCeEEEccCCCchhHHh
Q 010709 159 RDLLGCAETGSGKTAAF 175 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~ 175 (503)
+.+++.||+|+|||..+
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 67999999999999854
No 133
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.69 E-value=0.052 Score=53.88 Aligned_cols=41 Identities=15% Similarity=0.398 Sum_probs=23.7
Q ss_pred CccEEEecchhHHhhC-CCHHHHHHHHHhC-CCCCcEEEEEee
Q 010709 269 RVSFVILDEADRMLDM-GFEPQIREVMQNL-PDKHQTLLFSAT 309 (503)
Q Consensus 269 ~~~~vViDEaH~l~~~-~~~~~~~~il~~~-~~~~q~i~~SAT 309 (503)
+.++|+|||+|.+.+. .....+..++..+ ....++|+.|..
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4679999999987653 2233444444433 334555554433
No 134
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.65 E-value=0.013 Score=55.68 Aligned_cols=40 Identities=18% Similarity=0.286 Sum_probs=26.1
Q ss_pred CCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEE
Q 010709 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (503)
Q Consensus 268 ~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~S 307 (503)
...++|||||+|.+........+..++...+...++|+.+
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 3678999999998752223455666666655566555543
No 135
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.62 E-value=0.024 Score=53.34 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=15.6
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
++++++.||+|+|||..+
T Consensus 152 ~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 567999999999999754
No 136
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.51 E-value=0.077 Score=52.17 Aligned_cols=40 Identities=28% Similarity=0.179 Sum_probs=24.8
Q ss_pred CeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc--ccHHHH
Q 010709 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA--PTRELA 207 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~--Ptr~La 207 (503)
.++++|++|+|||+.. .-+..++... +.+++++. |.|.-+
T Consensus 102 vIlivG~~G~GKTTt~-~kLA~~l~~~-------G~kVllv~~D~~R~aa 143 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTV-AKLARYFQKR-------GYKVGVVCSDTWRPGA 143 (443)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHHHTT-------TCCEEEEECCCSSTHH
T ss_pred EEEEECcCCCCHHHHH-HHHHHHHHHC-------CCeEEEEeCCCcchhH
Confidence 4889999999999864 2233333322 45566665 555544
No 137
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.50 E-value=0.017 Score=56.17 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=14.2
Q ss_pred CeEEEccCCCchhHHh
Q 010709 160 DLLGCAETGSGKTAAF 175 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~ 175 (503)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6999999999999853
No 138
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.31 E-value=0.046 Score=53.03 Aligned_cols=37 Identities=14% Similarity=0.243 Sum_probs=22.2
Q ss_pred EEEecchhHHhhCCCHHH-HHHHHHhCCCCCcEEEEEee
Q 010709 272 FVILDEADRMLDMGFEPQ-IREVMQNLPDKHQTLLFSAT 309 (503)
Q Consensus 272 ~vViDEaH~l~~~~~~~~-~~~il~~~~~~~q~i~~SAT 309 (503)
+|||||+|.+........ +..++... .+..+|+.|..
T Consensus 136 vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~ 173 (384)
T 2qby_B 136 IIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISND 173 (384)
T ss_dssp EEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSS
T ss_pred EEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECC
Confidence 999999999876532333 45555444 44444444433
No 139
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.26 E-value=0.18 Score=47.68 Aligned_cols=49 Identities=12% Similarity=0.122 Sum_probs=28.3
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh-----cCCCeEEEccCCCchhHHh
Q 010709 121 ESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVAL-----SGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 121 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~-----~~~~vii~~~TGsGKTl~~ 175 (503)
..|+++.-.+...+.+...-. .+ ...+.+. ..+.+++.||+|+|||+.+
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~---~~---~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVI---LP---VKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTH---HH---HHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHH---HH---HhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 458888666666666643210 00 0011111 1345999999999999754
No 140
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.22 E-value=0.17 Score=45.08 Aligned_cols=39 Identities=15% Similarity=0.246 Sum_probs=22.3
Q ss_pred CCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEE
Q 010709 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (503)
Q Consensus 268 ~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~S 307 (503)
.+-.+|||||+|.+... ....+...+...+....+|+.|
T Consensus 125 ~~~~vlviDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~t 163 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLAT 163 (250)
T ss_dssp SSSEEEEEETGGGSCHH-HHHHHHHHHHSCCTTEEEEEEE
T ss_pred CCceEEEEECcccccHH-HHHHHHHHHhcCCCceEEEEEe
Confidence 34579999999975322 2334445555444455444444
No 141
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.19 E-value=0.11 Score=55.11 Aligned_cols=74 Identities=18% Similarity=0.261 Sum_probs=64.5
Q ss_pred CcEEEEEcchhhHHHHHHHHHHC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-ccccCCCCCCCCEEEE
Q 010709 375 PLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VASRGLDVMGVAHVVN 448 (503)
Q Consensus 375 ~~~lIF~~~~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~~Gldip~v~~VI~ 448 (503)
.+++|.++++.-+.++++.+.+. ++.+..+||+++..+|...++.+.+|+.+|+|+|. .+...+.+.++++||.
T Consensus 418 ~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 418 FQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 46999999999999888877654 78999999999999999999999999999999994 5556788888888874
No 142
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.90 E-value=0.21 Score=46.56 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=15.7
Q ss_pred cCCCeEEEccCCCchhHHh
Q 010709 157 SGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~ 175 (503)
.++.+++.||+|+|||+.+
T Consensus 48 ~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCSEEEEECSSSSSHHHHH
T ss_pred CCceEEEECCCCcCHHHHH
Confidence 3566999999999999743
No 143
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.78 E-value=0.1 Score=49.79 Aligned_cols=40 Identities=25% Similarity=0.340 Sum_probs=26.2
Q ss_pred CCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEe
Q 010709 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSA 308 (503)
Q Consensus 268 ~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SA 308 (503)
...++|+|||+|.+... ....+.+++...+....+|+.+.
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEeC
Confidence 35689999999976432 24456666776666665665443
No 144
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=94.72 E-value=0.093 Score=51.52 Aligned_cols=76 Identities=16% Similarity=0.138 Sum_probs=63.3
Q ss_pred CCCcEEEEEcchhhHHHHHHHHHH---CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc-cc---cCCCCCCCCE
Q 010709 373 PFPLTIVFVERKTRCDEVSEALVA---EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDV-AS---RGLDVMGVAH 445 (503)
Q Consensus 373 ~~~~~lIF~~~~~~~~~l~~~L~~---~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~~---~Gldip~v~~ 445 (503)
..+++||.++++.-+.++++.++. .++.+..+||+.+..++...++.+..|..+|+|+|.- +. .-++...+++
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 345799999999999999999998 5889999999999999988999999999999999942 21 1255667888
Q ss_pred EEE
Q 010709 446 VVN 448 (503)
Q Consensus 446 VI~ 448 (503)
||.
T Consensus 143 iVi 145 (414)
T 3oiy_A 143 VFV 145 (414)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 145
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.66 E-value=0.17 Score=47.61 Aligned_cols=39 Identities=21% Similarity=0.345 Sum_probs=25.6
Q ss_pred CCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEE
Q 010709 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (503)
Q Consensus 268 ~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~S 307 (503)
.+.++|||||+|.+... ....+.+++...+....+|+.+
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45789999999987432 2445666666666666555544
No 146
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.65 E-value=0.2 Score=48.30 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=15.3
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
+..+++.||+|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456999999999999854
No 147
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.54 E-value=0.088 Score=50.09 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=14.8
Q ss_pred CCeEEEccCCCchhHHh
Q 010709 159 RDLLGCAETGSGKTAAF 175 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~ 175 (503)
.++++.||+|+|||+.+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 47999999999999754
No 148
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.40 E-value=0.1 Score=50.02 Aligned_cols=43 Identities=21% Similarity=0.387 Sum_probs=28.5
Q ss_pred CCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEeeC
Q 010709 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (503)
Q Consensus 267 l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~ 310 (503)
..+.+++|+||+|. ++......+.+++...++...+|+.|-.+
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 34678999999997 44444566777777776666566555444
No 149
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=94.27 E-value=0.2 Score=46.81 Aligned_cols=40 Identities=18% Similarity=0.314 Sum_probs=25.6
Q ss_pred CCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEE
Q 010709 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (503)
Q Consensus 267 l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~S 307 (503)
..+.+++||||||.|... -.+.+.+.+..-++...+|+.+
T Consensus 80 ~~~~kvviIdead~lt~~-a~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQ-AANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSSEEEEETTGGGBCHH-HHHHTHHHHHSCCTTEEEEEEE
T ss_pred cCCceEEEeccHHHhCHH-HHHHHHHHHhCCCCCeEEEEEE
Confidence 456899999999987533 2344566666655555444444
No 150
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.23 E-value=0.27 Score=44.58 Aligned_cols=18 Identities=28% Similarity=0.233 Sum_probs=15.0
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
.+.+++.||+|+|||+.+
T Consensus 39 ~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 356999999999999754
No 151
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.97 E-value=0.14 Score=51.95 Aligned_cols=41 Identities=17% Similarity=0.177 Sum_probs=26.5
Q ss_pred CCccEEEecchhHHhhCC--CHHHHHHHHHhCCCCCcEEEEEeeC
Q 010709 268 SRVSFVILDEADRMLDMG--FEPQIREVMQNLPDKHQTLLFSATM 310 (503)
Q Consensus 268 ~~~~~vViDEaH~l~~~~--~~~~~~~il~~~~~~~q~i~~SAT~ 310 (503)
....+|||||+|.+.... ....+..++... ...+|+++++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCC
Confidence 456799999999876432 234555666553 34577777764
No 152
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=93.88 E-value=0.076 Score=52.00 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=13.6
Q ss_pred CeEE--EccCCCchhHHh
Q 010709 160 DLLG--CAETGSGKTAAF 175 (503)
Q Consensus 160 ~vii--~~~TGsGKTl~~ 175 (503)
.++| .|+.|+|||...
T Consensus 52 ~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEECTTCCSSSHHHHH
T ss_pred EEEEeCcCcCCCCHHHHH
Confidence 4888 899999999754
No 153
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.85 E-value=0.18 Score=50.26 Aligned_cols=38 Identities=16% Similarity=0.149 Sum_probs=23.8
Q ss_pred cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 010709 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~ 201 (503)
.|.-++|.|++|+|||+..+. +...+... .+..++|+.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~-ia~~~~~~------~g~~Vl~~s 239 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALN-IAQNVATK------TNENVAIFS 239 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHH-HHHHHHHH------SSCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHH-HHHHHHHh------CCCcEEEEE
Confidence 445599999999999975433 33333321 134577776
No 154
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=93.84 E-value=0.27 Score=47.24 Aligned_cols=40 Identities=15% Similarity=0.222 Sum_probs=24.0
Q ss_pred CCCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEE
Q 010709 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (503)
Q Consensus 267 l~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~S 307 (503)
..+..+|||||+|.+... ....+.+.+...+....+|+.+
T Consensus 117 ~~~~~vliiDe~~~l~~~-~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 117 RGRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSSEEEEEECGGGSCHH-HHHHHHHHHHSCCSSEEEEEEE
T ss_pred cCCeEEEEEECcchhcHH-HHHHHHHHHhcCCCceEEEEEe
Confidence 445789999999976432 2344555555555555444443
No 155
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.84 E-value=0.083 Score=50.75 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=14.8
Q ss_pred CCeEEEccCCCchhHHh
Q 010709 159 RDLLGCAETGSGKTAAF 175 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~ 175 (503)
+.+++.||+|+|||+.+
T Consensus 85 ~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCEEEECSTTSCHHHHH
T ss_pred ceEEEECCCCCcHHHHH
Confidence 56999999999999854
No 156
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.64 E-value=0.13 Score=48.56 Aligned_cols=17 Identities=35% Similarity=0.346 Sum_probs=14.9
Q ss_pred CCeEEEccCCCchhHHh
Q 010709 159 RDLLGCAETGSGKTAAF 175 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~ 175 (503)
..+++.||+|+|||+.+
T Consensus 39 ~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCEEECCTTCCCHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57999999999999743
No 157
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.64 E-value=0.25 Score=44.30 Aligned_cols=51 Identities=18% Similarity=0.207 Sum_probs=29.7
Q ss_pred cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q 010709 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 216 (503)
.|.-+++.|++|+|||+.+. -++...... +..++++.-. .-..++.+.+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~-~~~~~~~~~-------~~~v~~~~~e-~~~~~~~~~~~~ 72 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQ-QFLWNGLKM-------GEPGIYVALE-EHPVQVRQNMAQ 72 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHH-HHHHHHHHT-------TCCEEEEESS-SCHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHH-HHHHHHHhc-------CCeEEEEEcc-CCHHHHHHHHHH
Confidence 46679999999999998543 233333322 3457776633 223445554443
No 158
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.59 E-value=0.16 Score=47.72 Aligned_cols=38 Identities=26% Similarity=0.333 Sum_probs=24.4
Q ss_pred CccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEE
Q 010709 269 RVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (503)
Q Consensus 269 ~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~S 307 (503)
+..+|||||+|.+... ....+.+++...+....+|+.+
T Consensus 107 ~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAG-AQQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHH-HHHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHH-HHHHHHHHHhccCCCceEEEEe
Confidence 4789999999986432 2334556666655566555554
No 159
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.53 E-value=0.33 Score=46.60 Aligned_cols=17 Identities=41% Similarity=0.554 Sum_probs=14.9
Q ss_pred CCeEEEccCCCchhHHh
Q 010709 159 RDLLGCAETGSGKTAAF 175 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~ 175 (503)
+.+++.||+|+|||..+
T Consensus 71 ~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp CEEEEEESTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46999999999999854
No 160
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.47 E-value=0.23 Score=44.00 Aligned_cols=19 Identities=32% Similarity=0.256 Sum_probs=15.8
Q ss_pred cCCCeEEEccCCCchhHHh
Q 010709 157 SGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~ 175 (503)
.|.-+++.||+|+|||+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 4567899999999999743
No 161
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.39 E-value=0.32 Score=46.21 Aligned_cols=39 Identities=23% Similarity=0.425 Sum_probs=26.3
Q ss_pred CCccEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEE
Q 010709 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (503)
Q Consensus 268 ~~~~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~S 307 (503)
...+++||||+|.+... ....+.+++...+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 45789999999976432 3455667777766666555443
No 162
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=93.37 E-value=0.19 Score=50.36 Aligned_cols=42 Identities=19% Similarity=0.344 Sum_probs=26.7
Q ss_pred ccEEEecchhHHhhCC----------CHHHHHHHHHhCCCCCcEEEEEeeCC
Q 010709 270 VSFVILDEADRMLDMG----------FEPQIREVMQNLPDKHQTLLFSATMP 311 (503)
Q Consensus 270 ~~~vViDEaH~l~~~~----------~~~~~~~il~~~~~~~q~i~~SAT~~ 311 (503)
..+|+|||+|.+.... ....+..++..+.....++++.||=.
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~ 349 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNR 349 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESC
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCC
Confidence 3689999999876531 22344555565555566777777753
No 163
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.28 E-value=0.13 Score=51.07 Aligned_cols=16 Identities=25% Similarity=0.382 Sum_probs=14.1
Q ss_pred CeEEEccCCCchhHHh
Q 010709 160 DLLGCAETGSGKTAAF 175 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~ 175 (503)
.+++.||+|+|||+.+
T Consensus 52 ~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLA 67 (447)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 5999999999999854
No 164
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.13 E-value=0.28 Score=47.70 Aligned_cols=18 Identities=39% Similarity=0.442 Sum_probs=15.4
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
.+.+++.||+|+|||+.+
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999754
No 165
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.11 E-value=0.17 Score=50.26 Aligned_cols=39 Identities=21% Similarity=0.145 Sum_probs=23.8
Q ss_pred cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcc
Q 010709 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 202 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~P 202 (503)
.|.-++|.|++|+|||...+ -+....... .+..++++.-
T Consensus 199 ~G~l~ii~G~pg~GKT~lal-~ia~~~a~~------~g~~vl~~sl 237 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFAL-TIAQNAALK------EGVGVGIYSL 237 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHH-HHHHHHHHT------TCCCEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHH-HHHHHHHHh------CCCeEEEEEC
Confidence 34458999999999997543 333333321 1345777653
No 166
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=92.50 E-value=0.21 Score=55.40 Aligned_cols=75 Identities=15% Similarity=0.150 Sum_probs=63.2
Q ss_pred CCCcEEEEEcchhhHHHHHHHHHH---CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-c----cccCCCCCCCC
Q 010709 373 PFPLTIVFVERKTRCDEVSEALVA---EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-V----ASRGLDVMGVA 444 (503)
Q Consensus 373 ~~~~~lIF~~~~~~~~~l~~~L~~---~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-~----~~~Gldip~v~ 444 (503)
..+++||.++++.-+.++++.+.+ .++.+..+||+.+..+|...++.+..|..+|+|+|. . +.. ++..+++
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l~ 198 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFD 198 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCCS
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCcC
Confidence 345699999999999999999998 577999999999998888899999999999999994 2 222 4566788
Q ss_pred EEEE
Q 010709 445 HVVN 448 (503)
Q Consensus 445 ~VI~ 448 (503)
+||.
T Consensus 199 ~lVi 202 (1104)
T 4ddu_A 199 FVFV 202 (1104)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8886
No 167
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=91.87 E-value=5.9 Score=37.19 Aligned_cols=51 Identities=20% Similarity=0.436 Sum_probs=29.3
Q ss_pred HHHHHHHHcCCCCCCCccEEEecchhHHhh---CCCHHHHHHHHHhCCCCCcEEEEEee
Q 010709 254 GRFLDHLQQGNTSLSRVSFVILDEADRMLD---MGFEPQIREVMQNLPDKHQTLLFSAT 309 (503)
Q Consensus 254 ~~l~~~l~~~~~~l~~~~~vViDEaH~l~~---~~~~~~~~~il~~~~~~~q~i~~SAT 309 (503)
..+.+.+..... +--+|||||+|.+.. ..+...+..+....+ +..+| ++++
T Consensus 125 ~~l~~~l~~~~~---~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i-~~g~ 178 (357)
T 2fna_A 125 ANLLESFEQASK---DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RIKFI-MSGS 178 (357)
T ss_dssp HHHHHHHHHTCS---SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TEEEE-EEES
T ss_pred HHHHHHHHhcCC---CCeEEEEECHHHhhccCchhHHHHHHHHHHcCC-CeEEE-EEcC
Confidence 445555543211 234899999998764 356666776666542 44444 4444
No 168
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.84 E-value=1.4 Score=43.07 Aligned_cols=54 Identities=17% Similarity=0.142 Sum_probs=28.8
Q ss_pred CcCCcccCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHh
Q 010709 119 PIESFTDMCLHPSIMKDIEFH---EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 119 ~~~~~~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~ 175 (503)
|-.+|++.+=-+...+.|... .+..|--++... +...+.+++.||+|+|||+.+
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHH
Confidence 345688886555555555421 011111111100 012345999999999999743
No 169
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.73 E-value=0.13 Score=46.40 Aligned_cols=43 Identities=7% Similarity=0.051 Sum_probs=26.0
Q ss_pred CCccEEEecchhHHhh-----CCCHHHHHHHHHhCCCCCcEEEEEeeC
Q 010709 268 SRVSFVILDEADRMLD-----MGFEPQIREVMQNLPDKHQTLLFSATM 310 (503)
Q Consensus 268 ~~~~~vViDEaH~l~~-----~~~~~~~~~il~~~~~~~q~i~~SAT~ 310 (503)
.+.+++|+||.-.+++ ......+..++..+...-..++++.-.
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~ 181 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEA 181 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECC
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4578999999998775 333444666665553322355555444
No 170
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=91.72 E-value=0.17 Score=42.81 Aligned_cols=120 Identities=13% Similarity=0.161 Sum_probs=70.2
Q ss_pred cHHHHHHHHHHhcCC--CeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhccCC
Q 010709 145 TSIQAQAMPVALSGR--DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (503)
Q Consensus 145 ~~~Q~~~i~~i~~~~--~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~ 222 (503)
.+-|..++..++... -.+|.+.-|++||...+.-++..... .|..+.+|+|+..-.....+....
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~-------~Gr~V~vLAp~~~s~~~l~~~~~l------ 102 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE-------QGREVQIIAADRRSQMNMKQDERL------ 102 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH-------TTCCEEEECSTTHHHHHHSCTTTC------
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh-------cCeEEEEEcCchHHHHHHHhhcCc------
Confidence 456888888887544 38899999999998754433333222 378899999998665543322111
Q ss_pred CceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEEEecchhHHhhCCCHHHHHHHHHh-CCCCC
Q 010709 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN-LPDKH 301 (503)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH~l~~~~~~~~~~~il~~-~~~~~ 301 (503)
. .+++ |- ..+......+..=+++|||||-.|. ...+..++.. ...+.
T Consensus 103 --~--------------------~~t~--t~----~~ll~~~~~~tp~s~lIVD~AekLS----~kE~~~Lld~A~~~na 150 (189)
T 2l8b_A 103 --S--------------------GELI--TG----RRQLLEGMAFTPGSTVIVDQGEKLS----LKETLTLLDGAARHNV 150 (189)
T ss_dssp --S--------------------SCSS--ST----TTTTTTSCCCCCCCEEEEEESSSHH----HHHHHHHHHHHHHTTC
T ss_pred --C--------------------ccee--eh----hhhhcCCCCCCCCCEEEEechhhcC----HHHHHHHHHHHHhcCC
Confidence 0 0000 11 1112223333445689999999886 3344444433 23457
Q ss_pred cEEEEEee
Q 010709 302 QTLLFSAT 309 (503)
Q Consensus 302 q~i~~SAT 309 (503)
|+|++--+
T Consensus 151 qvvll~~~ 158 (189)
T 2l8b_A 151 QVLITDSG 158 (189)
T ss_dssp CEEEEESS
T ss_pred EEEEeCCc
Confidence 78777544
No 171
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.62 E-value=0.53 Score=43.71 Aligned_cols=18 Identities=28% Similarity=0.185 Sum_probs=14.1
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
++.+.++++.|+|||+..
T Consensus 98 ~~~i~i~g~~G~GKTT~~ 115 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTA 115 (295)
T ss_dssp SEEEEEECCTTTTHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445778899999999754
No 172
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=91.61 E-value=0.41 Score=53.41 Aligned_cols=75 Identities=11% Similarity=0.181 Sum_probs=64.6
Q ss_pred CCcEEEEEcchhhHHHHHHHHHHC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEc-cccccCCCCCCCCEEEE
Q 010709 374 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVAT-DVASRGLDVMGVAHVVN 448 (503)
Q Consensus 374 ~~~~lIF~~~~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~~Gldip~v~~VI~ 448 (503)
..+++|.|+++.-+.+.++.+.+. ++.+..+++..+..++...++.+..|..+|+|+| ..+...+.+.++++||.
T Consensus 652 g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 652 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEE
T ss_pred CCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEEE
Confidence 347999999999999998888753 6789999999999999999999999999999999 56666788888887774
No 173
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=91.48 E-value=0.68 Score=46.15 Aligned_cols=62 Identities=11% Similarity=0.044 Sum_probs=43.5
Q ss_pred cEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEc
Q 010709 376 LTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNL 449 (503)
Q Consensus 376 ~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~VI~~ 449 (503)
+++|.|.+...++.+.+.|...++.+...... . .+. ...|.|+..-++.|+-+|+.+++|..
T Consensus 384 rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~-~---------~~~--~g~v~i~~g~L~~GF~~p~~klaVIT 445 (483)
T 3hjh_A 384 PVVFSVESEGRREALGELLARIKIAPQRIMRL-D---------EAS--DRGRYLMIGAAEHGFVDTVRNLALIC 445 (483)
T ss_dssp CEEEEESCSSTTTTTHHHHGGGTCCCEECSCG-G---------GCC--TTCEEEEESCCCSCEEETTTTEEEEE
T ss_pred eEEEEeCChHHHHHHHHHHHHcCCCceecCch-h---------hcC--CCcEEEEEcccccCcccCCCCEEEEE
Confidence 58888888888888888888877765443221 1 112 23566777788999999988887764
No 174
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.26 E-value=0.16 Score=41.52 Aligned_cols=19 Identities=16% Similarity=0.069 Sum_probs=16.2
Q ss_pred hcCCCeEEEccCCCchhHH
Q 010709 156 LSGRDLLGCAETGSGKTAA 174 (503)
Q Consensus 156 ~~~~~vii~~~TGsGKTl~ 174 (503)
..+.++++.||+|+|||..
T Consensus 25 ~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp TCSSCEEEEEETTCCHHHH
T ss_pred CCCCcEEEECCCCccHHHH
Confidence 4567899999999999964
No 175
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.19 E-value=0.17 Score=41.46 Aligned_cols=38 Identities=5% Similarity=0.086 Sum_probs=23.2
Q ss_pred cEEEecchhHHhhCCCHHHHHHHHHhCCCCCcEEEEEee
Q 010709 271 SFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 309 (503)
Q Consensus 271 ~~vViDEaH~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 309 (503)
..++|||+|.+... ....+..++...+.+.++|+.|..
T Consensus 78 g~l~ldei~~l~~~-~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 78 GTLVLSHPEHLTRE-QQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp SCEEEECGGGSCHH-HHHHHHHHHHSSSCSSCEEEEESS
T ss_pred cEEEEcChHHCCHH-HHHHHHHHHhhcCCCEEEEEECCc
Confidence 47999999976432 334455555555556666555443
No 176
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=90.97 E-value=1.9 Score=38.45 Aligned_cols=72 Identities=15% Similarity=0.216 Sum_probs=54.5
Q ss_pred CCCcEEEEEcchhhHHHHHHHHHH----CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-----ccc-cCCCCCC
Q 010709 373 PFPLTIVFVERKTRCDEVSEALVA----EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-----VAS-RGLDVMG 442 (503)
Q Consensus 373 ~~~~~lIF~~~~~~~~~l~~~L~~----~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~Gldip~ 442 (503)
..+++||.+++++.+.++++.+.. .++.+..++|+.+..++...+.. ..+|+|+|. .+. ..+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCccc
Confidence 345699999999999988777765 38899999999998776655542 478999994 222 3457788
Q ss_pred CCEEEE
Q 010709 443 VAHVVN 448 (503)
Q Consensus 443 v~~VI~ 448 (503)
+++||.
T Consensus 177 ~~~lVi 182 (242)
T 3fe2_A 177 TTYLVL 182 (242)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 888775
No 177
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=90.71 E-value=2.9 Score=35.71 Aligned_cols=73 Identities=19% Similarity=0.311 Sum_probs=53.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHh----hCCCcEEEECcHHHHHHHHcCCCCCCC
Q 010709 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (503)
Q Consensus 194 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~ 269 (503)
++++||.++++.-+..+++.++.. ++.+..++|+....+....+ .+..+|+|+| +.+.. .+++..
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~~-Gldi~~ 122 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK-----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVASK-GLDFPA 122 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHHT-TCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchhc-CCCccc
Confidence 456999999999999998888775 36788889987765443322 2568999999 33443 566778
Q ss_pred ccEEEecc
Q 010709 270 VSFVILDE 277 (503)
Q Consensus 270 ~~~vViDE 277 (503)
+++||.=+
T Consensus 123 v~~VI~~d 130 (191)
T 2p6n_A 123 IQHVINYD 130 (191)
T ss_dssp CSEEEESS
T ss_pred CCEEEEeC
Confidence 88887633
No 178
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=90.70 E-value=1.3 Score=38.78 Aligned_cols=71 Identities=14% Similarity=0.257 Sum_probs=54.5
Q ss_pred CcEEEEEcchhhHHHHHHHHHHC-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc-c-----ccCCCCCCC
Q 010709 375 PLTIVFVERKTRCDEVSEALVAE-----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDV-A-----SRGLDVMGV 443 (503)
Q Consensus 375 ~~~lIF~~~~~~~~~l~~~L~~~-----~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~-----~~Gldip~v 443 (503)
.++||.++++..+.++++.+++. ++.+..++|+.+..++... +..+..+|+|+|.- + ...+++..+
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHH---HhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 47999999999999998888764 7889999999987665543 44567899999941 1 234677788
Q ss_pred CEEEE
Q 010709 444 AHVVN 448 (503)
Q Consensus 444 ~~VI~ 448 (503)
++||.
T Consensus 160 ~~lVi 164 (220)
T 1t6n_A 160 KHFIL 164 (220)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88775
No 179
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=90.59 E-value=0.25 Score=50.29 Aligned_cols=19 Identities=32% Similarity=0.286 Sum_probs=16.0
Q ss_pred cCCCeEEEccCCCchhHHh
Q 010709 157 SGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~ 175 (503)
.+..+++.||+|+|||+.+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3667999999999999843
No 180
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=90.56 E-value=0.74 Score=49.78 Aligned_cols=17 Identities=35% Similarity=0.399 Sum_probs=14.7
Q ss_pred CCeEEEccCCCchhHHh
Q 010709 159 RDLLGCAETGSGKTAAF 175 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~ 175 (503)
++++++||+|+|||..+
T Consensus 192 ~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp CCCEEEECTTSCHHHHH
T ss_pred CceEEEcCCCCCHHHHH
Confidence 46999999999999754
No 181
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=90.55 E-value=1.6 Score=38.57 Aligned_cols=70 Identities=16% Similarity=0.170 Sum_probs=50.2
Q ss_pred CCcEEEEEcchhhHHHHHHHHHHC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-c----ccc--CCCCCC
Q 010709 374 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-V----ASR--GLDVMG 442 (503)
Q Consensus 374 ~~~~lIF~~~~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-~----~~~--Gldip~ 442 (503)
..++||.++++..+.++++.+... ++.+..++|+.+...+...+ +..+|+|+|. . +.. .++..+
T Consensus 97 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~~ 171 (236)
T 2pl3_A 97 GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHATD 171 (236)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCccccc
Confidence 456999999999999999988765 47889999988765544333 4689999994 2 222 366777
Q ss_pred CCEEEE
Q 010709 443 VAHVVN 448 (503)
Q Consensus 443 v~~VI~ 448 (503)
+++||.
T Consensus 172 ~~~lVi 177 (236)
T 2pl3_A 172 LQMLVL 177 (236)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 887775
No 182
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=90.29 E-value=1.5 Score=41.33 Aligned_cols=53 Identities=13% Similarity=0.193 Sum_probs=32.5
Q ss_pred CccEEEecchhHHh-hCCCHHHHHHHHHhCCCCCcEEEEEeeCCHHHHHHHHHh
Q 010709 269 RVSFVILDEADRML-DMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEY 321 (503)
Q Consensus 269 ~~~~vViDEaH~l~-~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~~~~~~~~~ 321 (503)
.++++++|.+-+.- .......+..+.+.+.++..++.+.++...+....++.+
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~ 264 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQF 264 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHH
Confidence 35677888776432 122444555555555666667788888776666666555
No 183
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=89.75 E-value=1.5 Score=36.38 Aligned_cols=74 Identities=22% Similarity=0.342 Sum_probs=52.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHh----hCCCcEEEECcHHHHHHHHcCCCCCCC
Q 010709 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (503)
Q Consensus 194 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~ 269 (503)
+.++||.++++.-+..+++.+... ++.+..++|+....+....+ .+..+|+|+| +.+.. .+++..
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~~-Gld~~~ 103 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL-----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT-----DVAAR-GIDIEN 103 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GGGTT-TCCCSC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC-----Chhhc-CCchhc
Confidence 457999999999999988888775 36788889887665433322 2467899999 22222 566778
Q ss_pred ccEEEecch
Q 010709 270 VSFVILDEA 278 (503)
Q Consensus 270 ~~~vViDEa 278 (503)
+++||.-+.
T Consensus 104 ~~~Vi~~~~ 112 (163)
T 2hjv_A 104 ISLVINYDL 112 (163)
T ss_dssp CSEEEESSC
T ss_pred CCEEEEeCC
Confidence 888886443
No 184
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=89.39 E-value=0.92 Score=48.33 Aligned_cols=18 Identities=39% Similarity=0.399 Sum_probs=15.3
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
++++++.||+|+|||..+
T Consensus 207 ~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEcCCCCCHHHHH
Confidence 456999999999999754
No 185
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=88.86 E-value=0.77 Score=44.87 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=18.6
Q ss_pred HHHHHHHHh--cCCCeEEEccCCCchhHH
Q 010709 148 QAQAMPVAL--SGRDLLGCAETGSGKTAA 174 (503)
Q Consensus 148 Q~~~i~~i~--~~~~vii~~~TGsGKTl~ 174 (503)
+...+..++ .+.-++|+||||||||+.
T Consensus 155 ~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 155 NHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 344444444 334589999999999984
No 186
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=88.78 E-value=0.99 Score=45.70 Aligned_cols=58 Identities=19% Similarity=0.290 Sum_probs=54.5
Q ss_pred CcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 010709 375 PLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD 432 (503)
Q Consensus 375 ~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~ 432 (503)
+.+||.++++.-+....+.|...|+.+..+||+.+..++..++..+..|..+|+++|.
T Consensus 66 g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 66 GLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 5699999999999999999999999999999999999999999999999999999994
No 187
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=88.16 E-value=0.56 Score=49.79 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=31.1
Q ss_pred CcCCcccCCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHH
Q 010709 119 PIESFTDMCLHPSIMKDIEFHE---YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAA 174 (503)
Q Consensus 119 ~~~~~~~~~l~~~l~~~l~~~~---~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~ 174 (503)
+-..|++++--+...+.|...- ...|..++... +...+.+++.||+|+|||+.
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~l 527 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLL 527 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchHH
Confidence 3456888877777777775531 11221111000 01234699999999999974
No 188
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=87.87 E-value=2.1 Score=35.45 Aligned_cols=73 Identities=19% Similarity=0.327 Sum_probs=51.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHh----hCCCcEEEECcHHHHHHHHcCCCCCCC
Q 010709 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (503)
Q Consensus 194 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~ 269 (503)
+.++||.++++.-+..+++.++.. ++.+..++|+....+....+ .+..+|+|+| +.+.. .+++..
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~~-G~d~~~ 98 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND-----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST-----DLLAR-GIDVQQ 98 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE-----GGGTT-TCCCCS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEc-----Chhhc-CCCccc
Confidence 467999999999999888888764 36788888887765443322 2567899999 22222 456777
Q ss_pred ccEEEecc
Q 010709 270 VSFVILDE 277 (503)
Q Consensus 270 ~~~vViDE 277 (503)
+++||.-+
T Consensus 99 ~~~Vi~~~ 106 (165)
T 1fuk_A 99 VSLVINYD 106 (165)
T ss_dssp CSEEEESS
T ss_pred CCEEEEeC
Confidence 88887644
No 189
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=87.59 E-value=2.2 Score=37.22 Aligned_cols=71 Identities=23% Similarity=0.343 Sum_probs=52.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHh----hCCCcEEEECcHHHHHHHHcCCCCCCC
Q 010709 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (503)
Q Consensus 194 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~ 269 (503)
+.++||.++++.-+..+++.+... ++.+..++|+....+....+ .+..+|+|+| +.+.. .+++..
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~~-Gidi~~ 99 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT-----DVAAR-GLDIPQ 99 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH-----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC-----TTTTC-SSSCCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec-----Chhhc-CCCCcc
Confidence 467999999999999888888775 36788899988765544333 2568899999 33333 567778
Q ss_pred ccEEEe
Q 010709 270 VSFVIL 275 (503)
Q Consensus 270 ~~~vVi 275 (503)
+++||.
T Consensus 100 v~~Vi~ 105 (212)
T 3eaq_A 100 VDLVVH 105 (212)
T ss_dssp BSEEEE
T ss_pred CcEEEE
Confidence 888875
No 190
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=87.56 E-value=0.46 Score=55.28 Aligned_cols=39 Identities=21% Similarity=0.202 Sum_probs=26.8
Q ss_pred CCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccH
Q 010709 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR 204 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr 204 (503)
++.++++||+|+|||..+.. +...... .+.+++++..-.
T Consensus 1427 g~~vll~GppGtGKT~LA~a-la~ea~~-------~G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQ-VIAAAQR-------EGKTCAFIDAEH 1465 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHH-HHHHHHT-------TTCCEEEECTTS
T ss_pred CeEEEEECCCCCCHHHHHHH-HHHHHHH-------cCCcEEEEEccc
Confidence 67899999999999986533 3333222 256788887553
No 191
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=87.53 E-value=0.55 Score=46.35 Aligned_cols=44 Identities=20% Similarity=0.366 Sum_probs=31.9
Q ss_pred cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHH
Q 010709 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQ 208 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~ 208 (503)
...+++|.|+||+|||... ..++..++.. +..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~~-------g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLLR-------GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHHT-------TCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHHC-------CCcEEEEeCCCchhH
Confidence 4578999999999999864 4455555543 456777778888754
No 192
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=87.46 E-value=1 Score=46.26 Aligned_cols=58 Identities=14% Similarity=0.194 Sum_probs=53.5
Q ss_pred CcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHH--hcCCCcEEEEcc
Q 010709 375 PLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDF--RNGSTNILVATD 432 (503)
Q Consensus 375 ~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f--~~g~~~vLvaT~ 432 (503)
+.+||.++++.-+.+.++.|...|+.+..++|+++..++..++..+ ..+..+||++|.
T Consensus 85 g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 85 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 5799999999999999999999999999999999999999998888 568899999996
No 193
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=87.45 E-value=2.3 Score=38.11 Aligned_cols=71 Identities=20% Similarity=0.323 Sum_probs=53.7
Q ss_pred CCcEEEEEcchhhHHHHHHHHHHC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-----ccc--cCCCCCC
Q 010709 374 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-----VAS--RGLDVMG 442 (503)
Q Consensus 374 ~~~~lIF~~~~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~--~Gldip~ 442 (503)
..++||.++++..+.++++.+++. ++.+..++|+....++...+ .+..+|+|+|. .+. .++++..
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 346999999999999998887764 78899999999876554433 24689999993 222 4567888
Q ss_pred CCEEEE
Q 010709 443 VAHVVN 448 (503)
Q Consensus 443 v~~VI~ 448 (503)
+++||.
T Consensus 187 ~~~lVi 192 (249)
T 3ber_A 187 LKYLVM 192 (249)
T ss_dssp CCEEEE
T ss_pred cCEEEE
Confidence 888775
No 194
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=87.33 E-value=1.6 Score=38.57 Aligned_cols=70 Identities=14% Similarity=0.170 Sum_probs=53.0
Q ss_pred CCcEEEEEcchhhHHHHHHHHHHC-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc-c-----ccCCCCCC
Q 010709 374 FPLTIVFVERKTRCDEVSEALVAE-----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDV-A-----SRGLDVMG 442 (503)
Q Consensus 374 ~~~~lIF~~~~~~~~~l~~~L~~~-----~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~-----~~Gldip~ 442 (503)
..++||.+++++.+.++++.++.. ++.+..++|+....++...+ ...+|+|+|.- + ...+++..
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~~ 166 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPGS 166 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGGG
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCccccc
Confidence 457999999999999999988764 67889999999877655443 25799999942 1 23456777
Q ss_pred CCEEEE
Q 010709 443 VAHVVN 448 (503)
Q Consensus 443 v~~VI~ 448 (503)
+++||.
T Consensus 167 ~~~lVi 172 (230)
T 2oxc_A 167 IRLFIL 172 (230)
T ss_dssp CCEEEE
T ss_pred CCEEEe
Confidence 877774
No 195
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=87.30 E-value=2.2 Score=36.64 Aligned_cols=72 Identities=26% Similarity=0.277 Sum_probs=53.1
Q ss_pred CCCcEEEEEcchhhHHHHHHHHHHC--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-----ccc-cCCCCCCCC
Q 010709 373 PFPLTIVFVERKTRCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-----VAS-RGLDVMGVA 444 (503)
Q Consensus 373 ~~~~~lIF~~~~~~~~~l~~~L~~~--~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~Gldip~v~ 444 (503)
...++||.++++..+.++++.+... ++.+..++|+.....+...+. ...+|+|+|. .+. ..+++.+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 3457999999999999999999876 468888999887655444332 2578999994 222 346677888
Q ss_pred EEEE
Q 010709 445 HVVN 448 (503)
Q Consensus 445 ~VI~ 448 (503)
+||.
T Consensus 147 ~iVi 150 (207)
T 2gxq_A 147 VAVL 150 (207)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8775
No 196
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=87.28 E-value=0.69 Score=40.42 Aligned_cols=30 Identities=27% Similarity=0.207 Sum_probs=24.8
Q ss_pred cHHHHHHHHHHhcCCCeEEEccCCCchhHH
Q 010709 145 TSIQAQAMPVALSGRDLLGCAETGSGKTAA 174 (503)
Q Consensus 145 ~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~ 174 (503)
+.-|..++..+..|.-+.+.||.|+|||+.
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHH
Confidence 344667888888888899999999999984
No 197
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=87.05 E-value=0.62 Score=46.92 Aligned_cols=40 Identities=20% Similarity=-0.026 Sum_probs=25.5
Q ss_pred HHHHHHCCCCCCcHHHHHHHH-HHhcCCCeEEEccCCCchhHH
Q 010709 133 MKDIEFHEYTRPTSIQAQAMP-VALSGRDLLGCAETGSGKTAA 174 (503)
Q Consensus 133 ~~~l~~~~~~~~~~~Q~~~i~-~i~~~~~vii~~~TGsGKTl~ 174 (503)
...+...|. +.+.+...+. .+..|..++++||||||||+.
T Consensus 236 ~~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 236 PIDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 344555553 2333334343 345778899999999999983
No 198
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=87.04 E-value=1.2 Score=41.61 Aligned_cols=41 Identities=15% Similarity=0.031 Sum_probs=26.7
Q ss_pred CeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHH
Q 010709 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~L 206 (503)
-++|.||+|+|||+..+ .++...... ..+.+++++..-..+
T Consensus 30 iteI~G~pGsGKTtL~L-q~~~~~~~~-----g~g~~vlyId~E~s~ 70 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGL-TMVSSYMRQ-----YPDAVCLFYDSEFGI 70 (333)
T ss_dssp EEEEEESSSSSHHHHHH-HHHHHHHHH-----CTTCEEEEEESSCCC
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHHhc-----CCCceEEEEeccchh
Confidence 58999999999998653 334333332 124678888765444
No 199
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=86.90 E-value=0.76 Score=43.88 Aligned_cols=18 Identities=33% Similarity=0.375 Sum_probs=15.2
Q ss_pred cCCCeEEEccCCCchhHH
Q 010709 157 SGRDLLGCAETGSGKTAA 174 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~ 174 (503)
.+..++|+||||||||+.
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 445699999999999984
No 200
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=86.84 E-value=0.42 Score=45.24 Aligned_cols=38 Identities=18% Similarity=0.188 Sum_probs=24.7
Q ss_pred cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcc
Q 010709 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 202 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~P 202 (503)
.|.-++|.|++|+|||..++ -+....... +..++|+..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al-~ia~~~a~~-------g~~Vl~fSl 82 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMM-NMVLSALND-------DRGVAVFSL 82 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHH-HHHHHHHHT-------TCEEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHH-HHHHHHHHc-------CCeEEEEeC
Confidence 45559999999999997543 333333332 456777763
No 201
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=86.57 E-value=2.7 Score=40.23 Aligned_cols=72 Identities=14% Similarity=0.247 Sum_probs=55.1
Q ss_pred CCcEEEEEcchhhHHHHHHHHHHC-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-cc-----ccCCCCCC
Q 010709 374 FPLTIVFVERKTRCDEVSEALVAE-----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VA-----SRGLDVMG 442 (503)
Q Consensus 374 ~~~~lIF~~~~~~~~~l~~~L~~~-----~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~-----~~Gldip~ 442 (503)
..++||.|+++..+.++++.+.+. ++.+..++|+.+..++... +..+..+|+|+|. .+ ...+++..
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 457999999999999998888764 7889999999987665544 3457789999993 22 23456778
Q ss_pred CCEEEE
Q 010709 443 VAHVVN 448 (503)
Q Consensus 443 v~~VI~ 448 (503)
+++||.
T Consensus 153 ~~~vVi 158 (391)
T 1xti_A 153 IKHFIL 158 (391)
T ss_dssp CSEEEE
T ss_pred cCEEEE
Confidence 888775
No 202
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=86.46 E-value=0.69 Score=49.28 Aligned_cols=16 Identities=31% Similarity=0.324 Sum_probs=14.1
Q ss_pred CeEEEccCCCchhHHh
Q 010709 160 DLLGCAETGSGKTAAF 175 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~ 175 (503)
++++.||||+|||..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4999999999999754
No 203
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=86.37 E-value=1.7 Score=36.44 Aligned_cols=71 Identities=15% Similarity=0.237 Sum_probs=51.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHh----hCCCcEEEECcHHHHHHHHcCCCCCCC
Q 010709 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (503)
Q Consensus 194 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~ 269 (503)
+.++||.++++..+..+++.+... ++.+..++|+....+....+ .+..+|+|+|. .+. ..+++..
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~-~Gid~~~ 102 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD-----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VCA-RGIDVKQ 102 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT-----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SCC-TTTCCTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----chh-cCCCccc
Confidence 568999999999999888877764 46788889988765543332 24689999992 222 2456778
Q ss_pred ccEEEe
Q 010709 270 VSFVIL 275 (503)
Q Consensus 270 ~~~vVi 275 (503)
+++||.
T Consensus 103 ~~~Vi~ 108 (175)
T 2rb4_A 103 VTIVVN 108 (175)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888885
No 204
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=86.36 E-value=6 Score=35.64 Aligned_cols=71 Identities=21% Similarity=0.170 Sum_probs=52.6
Q ss_pred CCcEEEEEcchhhHHHHHHHHHHC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-----ccc--cCCCCCC
Q 010709 374 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-----VAS--RGLDVMG 442 (503)
Q Consensus 374 ~~~~lIF~~~~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~--~Gldip~ 442 (503)
..++||.++++.-+.++++.+++. +..+..++|+.....+...+ ..| .+|+|+|. .+. .++++.+
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~ 201 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL---GNG-INIIVATPGRLLDHMQNTPGFMYKN 201 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHH---HHC-CSEEEECHHHHHHHHHHCTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHh---cCC-CCEEEEcHHHHHHHHHccCCccccc
Confidence 456999999999999999888763 56788899988866554433 333 89999993 222 2467888
Q ss_pred CCEEEE
Q 010709 443 VAHVVN 448 (503)
Q Consensus 443 v~~VI~ 448 (503)
+++||.
T Consensus 202 l~~lVi 207 (262)
T 3ly5_A 202 LQCLVI 207 (262)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888775
No 205
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=86.35 E-value=1.8 Score=38.02 Aligned_cols=72 Identities=18% Similarity=0.316 Sum_probs=49.3
Q ss_pred CCCcEEEEEcchhhHHHHHHHHHHC---CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-----c-cccCCCCCCC
Q 010709 373 PFPLTIVFVERKTRCDEVSEALVAE---GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-----V-ASRGLDVMGV 443 (503)
Q Consensus 373 ~~~~~lIF~~~~~~~~~l~~~L~~~---~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~-~~~Gldip~v 443 (503)
...++||.+++++.+.++++.+... ++.+..++|+....++...+ . ...+|+|+|. . ....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 4457999999999999999998874 77889999988765544333 2 3489999993 1 2235677888
Q ss_pred CEEEE
Q 010709 444 AHVVN 448 (503)
Q Consensus 444 ~~VI~ 448 (503)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 88775
No 206
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.06 E-value=0.59 Score=45.81 Aligned_cols=55 Identities=16% Similarity=0.243 Sum_probs=33.4
Q ss_pred CCcCCcccCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHh
Q 010709 118 APIESFTDMCLHPSIMKDIEFH---EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 118 ~~~~~~~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~ 175 (503)
.|..+|++++-.+...+.|... -+..|.-++...+ ...+.+++.||+|+|||+.+
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHHH
Confidence 4556799998777777776532 1112222221111 12356999999999999743
No 207
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=85.91 E-value=3 Score=35.81 Aligned_cols=71 Identities=23% Similarity=0.265 Sum_probs=51.7
Q ss_pred CCcEEEEEcchhhHHHHHHHHHHC-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cccc-CCCCCC
Q 010709 374 FPLTIVFVERKTRCDEVSEALVAE-----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-----VASR-GLDVMG 442 (503)
Q Consensus 374 ~~~~lIF~~~~~~~~~l~~~L~~~-----~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~-Gldip~ 442 (503)
..++||.++++..+.++++.+... +..+..++|+....++...+ .+..+|+|+|. .+.. .+++.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRL----DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHT----TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhc----CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 356999999999999998888653 57889999998866543322 35688999994 2223 346677
Q ss_pred CCEEEE
Q 010709 443 VAHVVN 448 (503)
Q Consensus 443 v~~VI~ 448 (503)
+++||.
T Consensus 147 ~~~lVi 152 (206)
T 1vec_A 147 VQMIVL 152 (206)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888774
No 208
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=85.79 E-value=4.4 Score=30.21 Aligned_cols=49 Identities=18% Similarity=0.359 Sum_probs=41.4
Q ss_pred EEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCC
Q 010709 377 TIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGST 425 (503)
Q Consensus 377 ~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~r~~~~~~f~~g~~ 425 (503)
.+||....+-..++...++..|+.++.++++...+.|.+-++.|.....
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgv 53 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGV 53 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTC
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCC
Confidence 5678777788888999999999999999999999999998888865433
No 209
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=85.75 E-value=0.4 Score=43.62 Aligned_cols=20 Identities=30% Similarity=0.258 Sum_probs=16.6
Q ss_pred HhcCCCeEEEccCCCchhHH
Q 010709 155 ALSGRDLLGCAETGSGKTAA 174 (503)
Q Consensus 155 i~~~~~vii~~~TGsGKTl~ 174 (503)
+..|.-++++||||+|||+.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 34666799999999999984
No 210
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=85.49 E-value=1.9 Score=38.22 Aligned_cols=73 Identities=19% Similarity=0.286 Sum_probs=46.5
Q ss_pred CCCcEEEEEcchhhHHHHHHHHHHC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEc-----ccccc-CCCCCC
Q 010709 373 PFPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVAT-----DVASR-GLDVMG 442 (503)
Q Consensus 373 ~~~~~lIF~~~~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~~~-Gldip~ 442 (503)
...++||.++++..+.++++.++.. ++.+..++|+...... .+.+..+...|+|+| +.+.+ .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNE---MQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHH---HHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 3457999999999999999988764 5678888888764432 334556778999999 33333 356777
Q ss_pred CCEEEE
Q 010709 443 VAHVVN 448 (503)
Q Consensus 443 v~~VI~ 448 (503)
+++||.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 888774
No 211
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=85.31 E-value=0.53 Score=45.16 Aligned_cols=20 Identities=40% Similarity=0.439 Sum_probs=17.4
Q ss_pred HhcCCCeEEEccCCCchhHH
Q 010709 155 ALSGRDLLGCAETGSGKTAA 174 (503)
Q Consensus 155 i~~~~~vii~~~TGsGKTl~ 174 (503)
+..|..++++||||+|||+.
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 44788999999999999983
No 212
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=84.70 E-value=0.89 Score=48.25 Aligned_cols=16 Identities=38% Similarity=0.526 Sum_probs=14.2
Q ss_pred CCeEEEccCCCchhHH
Q 010709 159 RDLLGCAETGSGKTAA 174 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~ 174 (503)
+.+++.||+|+|||+.
T Consensus 239 ~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLI 254 (806)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4699999999999974
No 213
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=84.36 E-value=0.7 Score=39.94 Aligned_cols=24 Identities=17% Similarity=0.337 Sum_probs=17.0
Q ss_pred cCCCeEEEccCCCchhHHhHHHHHHH
Q 010709 157 SGRDLLGCAETGSGKTAAFTIPMIQH 182 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~~lp~l~~ 182 (503)
.|+-++++||+|+|||+. +-++..
T Consensus 3 ~g~~i~lvGpsGaGKSTL--l~~L~~ 26 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL--LKKLFQ 26 (198)
T ss_dssp --CCEEEECCTTSSHHHH--HHHHHH
T ss_pred CCCEEEEECCCCCCHHHH--HHHHHh
Confidence 467799999999999984 334443
No 214
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=84.28 E-value=2.5 Score=35.36 Aligned_cols=74 Identities=14% Similarity=0.111 Sum_probs=52.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHh----hCCCcEEEECcHHHHHHHHcCCCCCCC
Q 010709 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (503)
Q Consensus 194 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~ 269 (503)
+.++||.++++.-+..+++.+... ++.+..++|+....+....+ .+..+|+|+|. . +. ..+++..
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-~----~~-~Gldi~~ 99 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-L----FG-RGMDIER 99 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-C----CS-TTCCGGG
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-c----hh-cCcchhh
Confidence 467999999999999888888775 36788888887765443322 25689999993 2 22 2456777
Q ss_pred ccEEEecch
Q 010709 270 VSFVILDEA 278 (503)
Q Consensus 270 ~~~vViDEa 278 (503)
+++||.-+.
T Consensus 100 ~~~Vi~~d~ 108 (172)
T 1t5i_A 100 VNIAFNYDM 108 (172)
T ss_dssp CSEEEESSC
T ss_pred CCEEEEECC
Confidence 888876443
No 215
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=84.01 E-value=2.1 Score=41.52 Aligned_cols=18 Identities=22% Similarity=0.091 Sum_probs=14.9
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
|.-+.|.||+|+|||+..
T Consensus 178 Gei~~I~G~sGsGKTTLl 195 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLC 195 (400)
T ss_dssp TSEEEEEESTTSSHHHHH
T ss_pred CcEEEEEcCCCCChHHHH
Confidence 455899999999999743
No 216
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=83.88 E-value=1.1 Score=40.02 Aligned_cols=51 Identities=22% Similarity=0.282 Sum_probs=28.3
Q ss_pred cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHH
Q 010709 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVK 215 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~ 215 (503)
.|.-+++.|++|+|||..++-.+.+..... +..++|+.-. .-..++.+.+.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~-------~~~v~~~s~E-~~~~~~~~~~~ 79 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEY-------GEPGVFVTLE-ERARDLRREMA 79 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHH-------CCCEEEEESS-SCHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhc-------CCCceeeccc-CCHHHHHHHHH
Confidence 355699999999999975433233322332 3446666532 22334444443
No 217
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=83.84 E-value=1.3 Score=42.32 Aligned_cols=19 Identities=37% Similarity=0.378 Sum_probs=15.9
Q ss_pred cCCCeEEEccCCCchhHHh
Q 010709 157 SGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~ 175 (503)
...++++.||+|+|||+.+
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3467999999999999854
No 218
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=83.81 E-value=0.48 Score=40.26 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=15.5
Q ss_pred cCCCeEEEccCCCchhHH
Q 010709 157 SGRDLLGCAETGSGKTAA 174 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~ 174 (503)
.|+-++++||+|+|||+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466789999999999984
No 219
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=83.81 E-value=9 Score=37.30 Aligned_cols=42 Identities=24% Similarity=0.233 Sum_probs=24.6
Q ss_pred CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc--ccHHHHH
Q 010709 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA--PTRELAQ 208 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~--Ptr~La~ 208 (503)
+.++++|+.|+|||+... .+...+.. .+.+++++. +.+..+.
T Consensus 99 ~vi~i~G~~GsGKTT~~~--~LA~~l~~------~g~~Vllvd~D~~r~aa~ 142 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAA--KLALYYKG------KGRRPLLVAADTQRPAAR 142 (425)
T ss_dssp EEEEEECCTTSSHHHHHH--HHHHHHHT------TTCCEEEEECCSSCHHHH
T ss_pred eEEEEECCCCCCHHHHHH--HHHHHHHH------cCCeEEEeeccccCchhH
Confidence 347788999999998542 33333332 145566654 4444443
No 220
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=83.24 E-value=2.2 Score=36.25 Aligned_cols=72 Identities=22% Similarity=0.282 Sum_probs=43.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHH---HHh-hCCCcEEEECcHHHHHHHHcCCCCCCC
Q 010709 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR---SEL-RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (503)
Q Consensus 194 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~Ilv~Tp~~l~~~l~~~~~~l~~ 269 (503)
+.++||.++++.-+..+++.++.. ++.+..++|+....+.. ..+ .+..+|+|+|. .+ .. .+++..
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-~~----~~-Gldi~~ 114 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-VA----AR-GLDISN 114 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHT-----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CCCS
T ss_pred CCeEEEEECCHHHHHHHHHHHHHc-----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-hh----hc-CCCccc
Confidence 567999999999999888888764 36788888876544322 222 35688999992 22 22 456677
Q ss_pred ccEEEec
Q 010709 270 VSFVILD 276 (503)
Q Consensus 270 ~~~vViD 276 (503)
+++||.=
T Consensus 115 ~~~VI~~ 121 (185)
T 2jgn_A 115 VKHVINF 121 (185)
T ss_dssp BSEEEES
T ss_pred CCEEEEe
Confidence 8877763
No 221
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=83.21 E-value=5.3 Score=37.06 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=14.0
Q ss_pred CCeEEEccCCCchhHHh
Q 010709 159 RDLLGCAETGSGKTAAF 175 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~ 175 (503)
+-++++|++|+|||+..
T Consensus 105 ~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 34789999999999853
No 222
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=83.21 E-value=4.3 Score=39.78 Aligned_cols=71 Identities=13% Similarity=0.142 Sum_probs=53.3
Q ss_pred CCcEEEEEcchhhHHHHHHHHHHC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cccc-CCCCCCC
Q 010709 374 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-----VASR-GLDVMGV 443 (503)
Q Consensus 374 ~~~~lIF~~~~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~-Gldip~v 443 (503)
..++||.+++++.+.++++.+++. ++.+..++|+.+..++...+ ....+|+|+|. .+.+ .+++..+
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~ 204 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI----TRGCHVVIATPGRLLDFVDRTFITFEDT 204 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHH----TTCCSEEEECHHHHHHHHHTTSCCCTTC
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHh----hcCCCEEEEChHHHHHHHHhCCcccccC
Confidence 457999999999999999888764 57788899999876655433 24689999993 2333 3567788
Q ss_pred CEEEE
Q 010709 444 AHVVN 448 (503)
Q Consensus 444 ~~VI~ 448 (503)
++||.
T Consensus 205 ~~lVl 209 (434)
T 2db3_A 205 RFVVL 209 (434)
T ss_dssp CEEEE
T ss_pred CeEEE
Confidence 88774
No 223
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=83.13 E-value=2.1 Score=39.59 Aligned_cols=18 Identities=33% Similarity=0.423 Sum_probs=15.5
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
..++++.||+|+|||..+
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 567999999999999754
No 224
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=83.02 E-value=0.53 Score=40.71 Aligned_cols=19 Identities=21% Similarity=0.118 Sum_probs=16.4
Q ss_pred cCCCeEEEccCCCchhHHh
Q 010709 157 SGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~ 175 (503)
.++.++++|++|+|||+..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 5678999999999999854
No 225
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=82.95 E-value=1.4 Score=44.14 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=20.9
Q ss_pred HHHHHHHhcCCCeEEEccCCCchhHH
Q 010709 149 AQAMPVALSGRDLLGCAETGSGKTAA 174 (503)
Q Consensus 149 ~~~i~~i~~~~~vii~~~TGsGKTl~ 174 (503)
..++..+..+.++++.||+|+|||..
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHH
Confidence 44555566888999999999999973
No 226
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=82.79 E-value=6 Score=38.17 Aligned_cols=72 Identities=24% Similarity=0.310 Sum_probs=53.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHh----hCCCcEEEECcHHHHHHHHcCCCCCC
Q 010709 193 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLS 268 (503)
Q Consensus 193 ~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~ 268 (503)
.+.++||.++++.-+..+++.+++. ++.+..++|+....+....+ .+..+|+|+| +.+.. .+++.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~~-Gidip 343 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVAAR-GLDIS 343 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----HHHHT-TSCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC-----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEEC-----Chhhc-CCCcc
Confidence 3678999999999999988888774 46788889888765443332 2568999999 34444 56778
Q ss_pred CccEEEe
Q 010709 269 RVSFVIL 275 (503)
Q Consensus 269 ~~~~vVi 275 (503)
.+++||.
T Consensus 344 ~v~~Vi~ 350 (417)
T 2i4i_A 344 NVKHVIN 350 (417)
T ss_dssp CEEEEEE
T ss_pred cCCEEEE
Confidence 8888875
No 227
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=82.74 E-value=4 Score=36.49 Aligned_cols=71 Identities=13% Similarity=0.173 Sum_probs=51.4
Q ss_pred CCcEEEEEcchhhHHHHHHHHHHC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-cc-----ccCCCCCCC
Q 010709 374 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VA-----SRGLDVMGV 443 (503)
Q Consensus 374 ~~~~lIF~~~~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~-----~~Gldip~v 443 (503)
..++||.+++++.+.++++.+... ++.+..++|+....++...+ ....+|+|+|. .+ ...+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 357999999999999988887653 57788899988765544332 34679999994 22 224577788
Q ss_pred CEEEE
Q 010709 444 AHVVN 448 (503)
Q Consensus 444 ~~VI~ 448 (503)
++||.
T Consensus 176 ~~lVi 180 (253)
T 1wrb_A 176 KYIVL 180 (253)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88774
No 228
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=82.36 E-value=0.95 Score=41.04 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=16.0
Q ss_pred cCCCeEEEccCCCchhHHh
Q 010709 157 SGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~ 175 (503)
.+..+++.||+|+|||..+
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 4567999999999999743
No 229
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.33 E-value=1.5 Score=42.31 Aligned_cols=54 Identities=15% Similarity=0.167 Sum_probs=30.0
Q ss_pred CcCCcccCCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHh
Q 010709 119 PIESFTDMCLHPSIMKDIEFHE---YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 119 ~~~~~~~~~l~~~l~~~l~~~~---~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~ 175 (503)
|--+|++.+=-+...+.|+..= +..|.-++... +...+.+++.||+|+|||+.+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCCCCHHHHH
Confidence 3456888864456666654321 11111111111 112367999999999999743
No 230
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=82.02 E-value=12 Score=37.85 Aligned_cols=77 Identities=16% Similarity=0.128 Sum_probs=56.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHh----hCCCcEEEECcHHHHHHHHcCCCCCCC
Q 010709 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (503)
Q Consensus 194 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~ 269 (503)
+.++||.++++.-+..+++.+++.... ++.+..++|+....+....+ .+..+|+|+|. .+.. .+++.+
T Consensus 339 ~~~~iVF~~s~~~~~~l~~~L~~~~~~--~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~~-GiDip~ 410 (563)
T 3i5x_A 339 NYKAIIFAPTVKFTSFLCSILKNEFKK--DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGAR-GMDFPN 410 (563)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHHTT--TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTS-SCCCTT
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHhccC--CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hhhc-CCCccc
Confidence 578999999999999999999877532 47788888888765543332 25689999993 3333 567888
Q ss_pred ccEEEecch
Q 010709 270 VSFVILDEA 278 (503)
Q Consensus 270 ~~~vViDEa 278 (503)
+++||.-..
T Consensus 411 v~~VI~~~~ 419 (563)
T 3i5x_A 411 VHEVLQIGV 419 (563)
T ss_dssp CCEEEEESC
T ss_pred CCEEEEECC
Confidence 888886553
No 231
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=81.82 E-value=1.3 Score=42.97 Aligned_cols=42 Identities=21% Similarity=0.389 Sum_probs=28.3
Q ss_pred cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHH
Q 010709 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~L 206 (503)
.+.+++|.|+||+|||+..-. ++...... +.+++++=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~-~~~~~~~~-------~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM-LLLREYMQ-------GSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH-HHHHHHTT-------TCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHH-HHHHHHHC-------CCEEEEEeCCcCH
Confidence 567899999999999975432 33333322 4667777787653
No 232
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=81.77 E-value=0.62 Score=39.57 Aligned_cols=18 Identities=22% Similarity=0.150 Sum_probs=15.4
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
++.++++|++|+|||+..
T Consensus 5 ~~~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG 22 (185)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 456999999999999854
No 233
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=81.38 E-value=1.5 Score=40.63 Aligned_cols=18 Identities=28% Similarity=0.484 Sum_probs=15.1
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
++.++++|++|+|||+..
T Consensus 105 g~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp SSEEEEEESTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456889999999999854
No 234
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=81.37 E-value=0.7 Score=43.56 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=19.0
Q ss_pred HHHHhcCCCeEEEccCCCchhHHh
Q 010709 152 MPVALSGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 152 i~~i~~~~~vii~~~TGsGKTl~~ 175 (503)
...+..++++++.||+|+|||..+
T Consensus 40 ~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 40 LIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHHcCCeEEEECCCCCcHHHHH
Confidence 344456889999999999999743
No 235
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=81.36 E-value=0.57 Score=39.62 Aligned_cols=19 Identities=26% Similarity=0.165 Sum_probs=16.3
Q ss_pred cCCCeEEEccCCCchhHHh
Q 010709 157 SGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~ 175 (503)
.++.++++|++|+|||+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCCCEEEECSTTSSHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHH
Confidence 4567999999999999854
No 236
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=81.34 E-value=0.69 Score=43.56 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=14.5
Q ss_pred CCeEEEccCCCchhHHh
Q 010709 159 RDLLGCAETGSGKTAAF 175 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~ 175 (503)
+.++|+||||+|||...
T Consensus 41 ~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLS 57 (339)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35899999999999854
No 237
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=81.17 E-value=0.66 Score=38.75 Aligned_cols=16 Identities=31% Similarity=0.272 Sum_probs=13.7
Q ss_pred CeEEEccCCCchhHHh
Q 010709 160 DLLGCAETGSGKTAAF 175 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~ 175 (503)
.++++|++|+|||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999854
No 238
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=81.16 E-value=0.79 Score=44.09 Aligned_cols=19 Identities=32% Similarity=0.286 Sum_probs=16.0
Q ss_pred hcCCCeEEEccCCCchhHH
Q 010709 156 LSGRDLLGCAETGSGKTAA 174 (503)
Q Consensus 156 ~~~~~vii~~~TGsGKTl~ 174 (503)
..|..++++||||+|||+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3566799999999999984
No 239
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=81.08 E-value=0.73 Score=43.55 Aligned_cols=19 Identities=42% Similarity=0.779 Sum_probs=16.9
Q ss_pred HhcCCCeEEEccCCCchhH
Q 010709 155 ALSGRDLLGCAETGSGKTA 173 (503)
Q Consensus 155 i~~~~~vii~~~TGsGKTl 173 (503)
+..|+.++++||||+|||+
T Consensus 168 i~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHHTCCEEEEESTTSCHHH
T ss_pred ccCCCEEEEECCCCCCHHH
Confidence 3478899999999999998
No 240
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=81.06 E-value=0.68 Score=38.98 Aligned_cols=18 Identities=17% Similarity=0.257 Sum_probs=15.0
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
++-++++|++|+|||+..
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 445899999999999854
No 241
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=80.97 E-value=0.89 Score=39.62 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=15.5
Q ss_pred cCCCeEEEccCCCchhHHh
Q 010709 157 SGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~ 175 (503)
.|+-++++||+|+|||+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4556899999999999843
No 242
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=80.81 E-value=0.66 Score=40.26 Aligned_cols=20 Identities=25% Similarity=0.380 Sum_probs=16.6
Q ss_pred hcCCCeEEEccCCCchhHHh
Q 010709 156 LSGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 156 ~~~~~vii~~~TGsGKTl~~ 175 (503)
..++-++++||+|+|||+..
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHH
Confidence 35677999999999999843
No 243
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.75 E-value=1.2 Score=43.70 Aligned_cols=17 Identities=29% Similarity=0.384 Sum_probs=14.8
Q ss_pred CCeEEEccCCCchhHHh
Q 010709 159 RDLLGCAETGSGKTAAF 175 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~ 175 (503)
+.+++.||+|+|||+.+
T Consensus 216 rGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 56999999999999843
No 244
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=80.72 E-value=7.6 Score=38.08 Aligned_cols=90 Identities=17% Similarity=0.133 Sum_probs=61.9
Q ss_pred ChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHHHHHHHHHC-CC---eEEEEcCCCCHHHHHHHHHHHhcC
Q 010709 348 SENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-GL---HAVALHGGRNQSDRESALRDFRNG 423 (503)
Q Consensus 348 ~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~-~~---~v~~lh~~~~~~~r~~~~~~f~~g 423 (503)
....|.......+..... .+.+++||.|+++..+.+.++.+.+. +. .+..+||+....++.....
T Consensus 32 tG~GKT~~~~~~~~~~~~------~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----- 100 (494)
T 1wp9_A 32 TGLGKTLIAMMIAEYRLT------KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA----- 100 (494)
T ss_dssp TTSCHHHHHHHHHHHHHH------HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----
T ss_pred CCCCHHHHHHHHHHHHHh------cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----
Confidence 344565555444443322 13457999999999999999988875 55 8999999999887665543
Q ss_pred CCcEEEEcc-ccc-----cCCCCCCCCEEEE
Q 010709 424 STNILVATD-VAS-----RGLDVMGVAHVVN 448 (503)
Q Consensus 424 ~~~vLvaT~-~~~-----~Gldip~v~~VI~ 448 (503)
...|+|+|. .+. ..+....+++||.
T Consensus 101 ~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIi 131 (494)
T 1wp9_A 101 RAKVIVATPQTIENDLLAGRISLEDVSLIVF 131 (494)
T ss_dssp HCSEEEECHHHHHHHHHTTSCCTTSCSEEEE
T ss_pred CCCEEEecHHHHHHHHhcCCcchhhceEEEE
Confidence 468999993 222 2456677787774
No 245
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=80.45 E-value=1.2 Score=39.05 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=16.0
Q ss_pred hcCCCeEEEccCCCchhHH
Q 010709 156 LSGRDLLGCAETGSGKTAA 174 (503)
Q Consensus 156 ~~~~~vii~~~TGsGKTl~ 174 (503)
..|+-+.++||+|+|||+.
T Consensus 21 ~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp -CCCCEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3677899999999999983
No 246
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=80.33 E-value=5.7 Score=37.74 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=15.2
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
.+.+++.||+|+|||+.+
T Consensus 117 ~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CSEEEEESSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456999999999999754
No 247
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=80.31 E-value=0.7 Score=39.98 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=16.4
Q ss_pred hcCCCeEEEccCCCchhHHh
Q 010709 156 LSGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 156 ~~~~~vii~~~TGsGKTl~~ 175 (503)
..|.-++++||+|+|||+..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35667899999999999843
No 248
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=80.31 E-value=1.7 Score=40.40 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=18.6
Q ss_pred CCCeEEEccCCCchhHHhHHHHHHHHHh
Q 010709 158 GRDLLGCAETGSGKTAAFTIPMIQHCVA 185 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~~lp~l~~~~~ 185 (503)
+.-+.+.||+|+|||+. +..+..+..
T Consensus 102 g~vi~lvG~nGsGKTTl--l~~Lagll~ 127 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTT--IAKLGRYYQ 127 (304)
T ss_dssp SSEEEEECSTTSSHHHH--HHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHH--HHHHHHHHH
Confidence 44588999999999984 445555444
No 249
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=80.27 E-value=2.7 Score=36.75 Aligned_cols=71 Identities=15% Similarity=0.239 Sum_probs=45.8
Q ss_pred CCCcEEEEEcchhhHHHHHHHHHHC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc------cccCCCCCC
Q 010709 373 PFPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDV------ASRGLDVMG 442 (503)
Q Consensus 373 ~~~~~lIF~~~~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~------~~~Gldip~ 442 (503)
...++||.++++..+.++++.+... ++.+..++|+....++...+ . ..+|+|+|.- ....+++..
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL---R--DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------C---T--TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcC---C--CCCEEEECHHHHHHHHHhCCcchhh
Confidence 3457999999999999998888753 67889999988765544332 2 3789999942 134566777
Q ss_pred CCEEEE
Q 010709 443 VAHVVN 448 (503)
Q Consensus 443 v~~VI~ 448 (503)
+++||.
T Consensus 156 ~~~iVi 161 (224)
T 1qde_A 156 IKMFIL 161 (224)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 888774
No 250
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=79.86 E-value=1.2 Score=42.34 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=20.1
Q ss_pred HHHHHhcCCC--eEEEccCCCchhHHh
Q 010709 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (503)
Q Consensus 151 ~i~~i~~~~~--vii~~~TGsGKTl~~ 175 (503)
.+..+++|.| ++..|.||||||...
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 4566678887 888999999999653
No 251
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=79.81 E-value=3.5 Score=46.23 Aligned_cols=59 Identities=15% Similarity=0.085 Sum_probs=41.7
Q ss_pred CeEEEccCCCchhHHhHHHHHHHHHhcCC----CCCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q 010709 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTP----VGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~~lp~l~~~~~~~~----~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 218 (503)
..+|.|.-|||||.+...-++..+...+. ...-....+|+|+=|+..|..+.+++.+..
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 45999999999998765555555543210 011224579999999999999998887654
No 252
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=79.80 E-value=1.2 Score=38.47 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=15.5
Q ss_pred cCCCeEEEccCCCchhHH
Q 010709 157 SGRDLLGCAETGSGKTAA 174 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~ 174 (503)
.|.-+.+.||+|+|||+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 466689999999999984
No 253
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=79.70 E-value=0.52 Score=40.30 Aligned_cols=18 Identities=39% Similarity=0.521 Sum_probs=15.5
Q ss_pred cCCCeEEEccCCCchhHH
Q 010709 157 SGRDLLGCAETGSGKTAA 174 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~ 174 (503)
.|..+++.|++|+|||+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp TTEEEEEEECTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 566799999999999984
No 254
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=79.49 E-value=3.1 Score=37.67 Aligned_cols=43 Identities=19% Similarity=0.149 Sum_probs=28.6
Q ss_pred HHHHHHHHHCCCCCCcHHHHH-HHHHHhcCC-----CeEEEccCCCchhHHh
Q 010709 130 PSIMKDIEFHEYTRPTSIQAQ-AMPVALSGR-----DLLGCAETGSGKTAAF 175 (503)
Q Consensus 130 ~~l~~~l~~~~~~~~~~~Q~~-~i~~i~~~~-----~vii~~~TGsGKTl~~ 175 (503)
..+.+-|+..|+. +++.. ++...++++ .+++.||+|+|||+.+
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 4666777777765 44433 244445443 3999999999999754
No 255
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=79.44 E-value=0.95 Score=37.84 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=14.9
Q ss_pred CCCeEEEccCCCchhHH
Q 010709 158 GRDLLGCAETGSGKTAA 174 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~ 174 (503)
+..+++.|+.|+|||+.
T Consensus 4 ~~~i~l~G~~GsGKSTl 20 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTI 20 (173)
T ss_dssp CCCEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 45799999999999984
No 256
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=79.42 E-value=1 Score=40.74 Aligned_cols=15 Identities=40% Similarity=0.197 Sum_probs=13.3
Q ss_pred eEEEccCCCchhHHh
Q 010709 161 LLGCAETGSGKTAAF 175 (503)
Q Consensus 161 vii~~~TGsGKTl~~ 175 (503)
++|+||+|||||+.+
T Consensus 4 i~I~G~~GSGKSTla 18 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCcCHHHHH
Confidence 789999999999854
No 257
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=79.35 E-value=0.92 Score=39.10 Aligned_cols=18 Identities=28% Similarity=0.468 Sum_probs=14.9
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
++-+++.||||+|||..+
T Consensus 34 g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TEEEEEECCCTTTTHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 456899999999999643
No 258
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=79.23 E-value=1 Score=41.89 Aligned_cols=16 Identities=25% Similarity=0.081 Sum_probs=13.7
Q ss_pred CeEEEccCCCchhHHh
Q 010709 160 DLLGCAETGSGKTAAF 175 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~ 175 (503)
-++|+||||+|||..+
T Consensus 5 ~i~i~GptgsGKt~la 20 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCcCCHHHHH
Confidence 4789999999999754
No 259
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=79.22 E-value=17 Score=36.95 Aligned_cols=77 Identities=16% Similarity=0.128 Sum_probs=56.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHh----hCCCcEEEECcHHHHHHHHcCCCCCCC
Q 010709 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (503)
Q Consensus 194 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~ 269 (503)
+.++||.++++.-+..+++.+++.... ++.+..++|+....+....+ .+..+|+|+|. .+.. .+++.+
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~~--~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~~~-GiDip~ 359 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFKK--DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGAR-GMDFPN 359 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHTT--TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTS-SCCCTT
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhcC--CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hhhc-CCCccc
Confidence 568999999999999999999877532 47788888887765443322 35689999993 3333 567788
Q ss_pred ccEEEecch
Q 010709 270 VSFVILDEA 278 (503)
Q Consensus 270 ~~~vViDEa 278 (503)
+++||.-..
T Consensus 360 v~~VI~~~~ 368 (579)
T 3sqw_A 360 VHEVLQIGV 368 (579)
T ss_dssp CCEEEEESC
T ss_pred CCEEEEcCC
Confidence 998887554
No 260
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=79.01 E-value=0.88 Score=38.71 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=15.9
Q ss_pred cCCCeEEEccCCCchhHHh
Q 010709 157 SGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~ 175 (503)
.+..++++|++|+|||++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3567999999999999854
No 261
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=79.01 E-value=1 Score=38.53 Aligned_cols=16 Identities=25% Similarity=0.511 Sum_probs=14.0
Q ss_pred CCeEEEccCCCchhHH
Q 010709 159 RDLLGCAETGSGKTAA 174 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~ 174 (503)
+-++++||.|+|||+.
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999984
No 262
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=78.96 E-value=1.1 Score=41.71 Aligned_cols=16 Identities=38% Similarity=0.326 Sum_probs=13.6
Q ss_pred CeEEEccCCCchhHHh
Q 010709 160 DLLGCAETGSGKTAAF 175 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~ 175 (503)
-++|+||||+|||..+
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3789999999999754
No 263
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=78.93 E-value=1.6 Score=40.50 Aligned_cols=36 Identities=22% Similarity=0.359 Sum_probs=23.2
Q ss_pred CCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 010709 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~ 201 (503)
|.-+.+.||+|+|||+. +..+..+... .++++++..
T Consensus 100 g~vi~lvG~nGsGKTTl--l~~Lag~l~~------~~g~V~l~g 135 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTS--LGKLAHRLKN------EGTKVLMAA 135 (302)
T ss_dssp CEEEEEECCTTSCHHHH--HHHHHHHHHH------TTCCEEEEC
T ss_pred CcEEEEEcCCCCCHHHH--HHHHHHHHHH------cCCeEEEEe
Confidence 44588999999999984 4455544432 134566654
No 264
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=78.91 E-value=1.5 Score=41.19 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=19.5
Q ss_pred HHHHHhcCCC--eEEEccCCCchhHHh
Q 010709 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (503)
Q Consensus 151 ~i~~i~~~~~--vii~~~TGsGKTl~~ 175 (503)
.+..+++|.+ ++..|+||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 3445668887 888999999999653
No 265
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.85 E-value=0.92 Score=44.58 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=30.8
Q ss_pred CcCCcccCCCCHHHHHHHHHCC---CCCCcHHHHHHHHHH--hcCCCeEEEccCCCchhHHh
Q 010709 119 PIESFTDMCLHPSIMKDIEFHE---YTRPTSIQAQAMPVA--LSGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 119 ~~~~~~~~~l~~~l~~~l~~~~---~~~~~~~Q~~~i~~i--~~~~~vii~~~TGsGKTl~~ 175 (503)
|--+|++++=-+...+.|+..= +..| +.+..+ ..-+.+++.||+|+|||+.+
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~p-----e~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSP-----ERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCH-----HHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCH-----HHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 3456888876666776665421 1111 111111 12356999999999999743
No 266
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=78.80 E-value=4.4 Score=37.49 Aligned_cols=74 Identities=20% Similarity=0.313 Sum_probs=52.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHh----hCCCcEEEECcHHHHHHHHcCCCCCCC
Q 010709 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (503)
Q Consensus 194 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~ 269 (503)
+.++||.++++.-+..+++.+... ++.+..++|+....+....+ .+..+|+|+| +.+.. .+.+..
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT-----~va~~-Gidi~~ 96 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT-----DVAAR-GLDIPQ 96 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-----STTTC-STTCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe-----chhhc-Cccccc
Confidence 467999999999888887777654 47788899987765543333 3568999999 33333 567788
Q ss_pred ccEEEecch
Q 010709 270 VSFVILDEA 278 (503)
Q Consensus 270 ~~~vViDEa 278 (503)
+++||.=+.
T Consensus 97 v~~VI~~d~ 105 (300)
T 3i32_A 97 VDLVVHYRM 105 (300)
T ss_dssp CSEEEESSC
T ss_pred eeEEEEcCC
Confidence 888885443
No 267
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=78.73 E-value=1 Score=38.41 Aligned_cols=22 Identities=18% Similarity=0.375 Sum_probs=16.3
Q ss_pred CCeEEEccCCCchhHHhHHHHHHH
Q 010709 159 RDLLGCAETGSGKTAAFTIPMIQH 182 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~~lp~l~~ 182 (503)
+-+.+.||+|+|||+. +-++..
T Consensus 2 ~ii~l~GpsGaGKsTl--~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL--LKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHH--HHHHHH
T ss_pred CEEEEECCCCCCHHHH--HHHHHh
Confidence 4578999999999984 334443
No 268
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=78.68 E-value=1.6 Score=38.31 Aligned_cols=18 Identities=33% Similarity=0.178 Sum_probs=15.4
Q ss_pred cCCCeEEEccCCCchhHH
Q 010709 157 SGRDLLGCAETGSGKTAA 174 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~ 174 (503)
.|.-+.+.||+|+|||+.
T Consensus 24 ~G~~~~l~G~nGsGKSTl 41 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQL 41 (231)
T ss_dssp SSEEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456699999999999984
No 269
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=78.56 E-value=1.4 Score=41.69 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=19.0
Q ss_pred HHHHHhcCCC--eEEEccCCCchhHH
Q 010709 151 AMPVALSGRD--LLGCAETGSGKTAA 174 (503)
Q Consensus 151 ~i~~i~~~~~--vii~~~TGsGKTl~ 174 (503)
.+..+++|.+ ++..|+||||||..
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyT 111 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYS 111 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeE
Confidence 3445568887 78899999999975
No 270
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=78.48 E-value=3.6 Score=38.54 Aligned_cols=49 Identities=16% Similarity=0.181 Sum_probs=27.9
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh-----cCCCeEEEccCCCchhHHh
Q 010709 121 ESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVAL-----SGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 121 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~-----~~~~vii~~~TGsGKTl~~ 175 (503)
..|++++=.+...+.|...-. .|. ..+.+. ..+.+++.||+|+|||+.+
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~---~p~---~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVI---LPI---KFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHH---HHH---HCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHH---HHH---hCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 468888655666666542100 000 001121 1256999999999999743
No 271
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=78.44 E-value=1.2 Score=38.35 Aligned_cols=18 Identities=17% Similarity=0.357 Sum_probs=15.8
Q ss_pred cCCCeEEEccCCCchhHH
Q 010709 157 SGRDLLGCAETGSGKTAA 174 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~ 174 (503)
.|+-++++||+|+|||+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp SCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECcCCCCHHHH
Confidence 567799999999999984
No 272
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=78.29 E-value=3.5 Score=45.58 Aligned_cols=73 Identities=15% Similarity=0.170 Sum_probs=56.6
Q ss_pred CCcEEEEEcchhhHHHHHHHHHHC----CC----eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-ccccCCC-CCCC
Q 010709 374 FPLTIVFVERKTRCDEVSEALVAE----GL----HAVALHGGRNQSDRESALRDFRNGSTNILVATD-VASRGLD-VMGV 443 (503)
Q Consensus 374 ~~~~lIF~~~~~~~~~l~~~L~~~----~~----~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~~Gld-ip~v 443 (503)
.+++||.++++..+.++++.++.. ++ .+..+||+.+..++.+..+.+.. .+|+|+|. .+..-+. +..+
T Consensus 99 ~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~l 176 (1054)
T 1gku_B 99 GKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGHF 176 (1054)
T ss_dssp SCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCCC
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhccC
Confidence 356999999999999998888753 56 88999999999888888877776 89999994 2222222 5578
Q ss_pred CEEEE
Q 010709 444 AHVVN 448 (503)
Q Consensus 444 ~~VI~ 448 (503)
++||.
T Consensus 177 ~~lVi 181 (1054)
T 1gku_B 177 DFIFV 181 (1054)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 88775
No 273
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=78.14 E-value=0.95 Score=38.49 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=15.2
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
+..+++.|++|+|||+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999854
No 274
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=78.14 E-value=0.94 Score=38.07 Aligned_cols=16 Identities=31% Similarity=0.277 Sum_probs=13.7
Q ss_pred CeEEEccCCCchhHHh
Q 010709 160 DLLGCAETGSGKTAAF 175 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~ 175 (503)
-++++|++|||||+.+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 3789999999999854
No 275
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=77.72 E-value=0.97 Score=37.64 Aligned_cols=16 Identities=6% Similarity=-0.201 Sum_probs=13.7
Q ss_pred CeEEEccCCCchhHHh
Q 010709 160 DLLGCAETGSGKTAAF 175 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~ 175 (503)
.+++.|+.|+|||+..
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 276
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=77.64 E-value=1.7 Score=40.88 Aligned_cols=26 Identities=23% Similarity=0.491 Sum_probs=20.8
Q ss_pred HHHHHHhcCCC--eEEEccCCCchhHHh
Q 010709 150 QAMPVALSGRD--LLGCAETGSGKTAAF 175 (503)
Q Consensus 150 ~~i~~i~~~~~--vii~~~TGsGKTl~~ 175 (503)
..+..+++|.| ++..|+||||||...
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 35666778988 788999999999653
No 277
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=77.57 E-value=1.7 Score=41.22 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=19.0
Q ss_pred HHHHHhcCCC--eEEEccCCCchhHH
Q 010709 151 AMPVALSGRD--LLGCAETGSGKTAA 174 (503)
Q Consensus 151 ~i~~i~~~~~--vii~~~TGsGKTl~ 174 (503)
.+..+++|.+ ++..|.||||||..
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyT 106 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWT 106 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEE
Confidence 3445668887 78899999999965
No 278
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=77.50 E-value=1.5 Score=40.82 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=15.9
Q ss_pred cCCCeEEEccCCCchhHHh
Q 010709 157 SGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~ 175 (503)
.+.++++.|++|+|||+.+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4567999999999999743
No 279
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=77.26 E-value=1.7 Score=41.41 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=19.0
Q ss_pred HHHHHhcCCC--eEEEccCCCchhHH
Q 010709 151 AMPVALSGRD--LLGCAETGSGKTAA 174 (503)
Q Consensus 151 ~i~~i~~~~~--vii~~~TGsGKTl~ 174 (503)
.+..++.|.+ ++..|.||||||..
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyT 101 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHT 101 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceE
Confidence 3445668887 78899999999965
No 280
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=77.21 E-value=0.66 Score=42.53 Aligned_cols=51 Identities=14% Similarity=0.218 Sum_probs=24.6
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCcHHH-HHHHHHHh--cCCCeEEEccCCCchhHH
Q 010709 121 ESFTDMCLHPSIMKDIEFHEYTRPTSIQ-AQAMPVAL--SGRDLLGCAETGSGKTAA 174 (503)
Q Consensus 121 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q-~~~i~~i~--~~~~vii~~~TGsGKTl~ 174 (503)
..|++++-.+.+.+.|...-. .|+. .+.+..+- -.+.+++.||+|+|||+.
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~---~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAIL---APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp -----CCHHHHHHHHHHHHHT---HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 457777655666666643210 1111 11222211 123399999999999974
No 281
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=77.13 E-value=1.7 Score=41.62 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=19.1
Q ss_pred HHHHHhcCCC--eEEEccCCCchhHH
Q 010709 151 AMPVALSGRD--LLGCAETGSGKTAA 174 (503)
Q Consensus 151 ~i~~i~~~~~--vii~~~TGsGKTl~ 174 (503)
.+..++.|.+ ++..|+||||||..
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyT 118 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYT 118 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEe
Confidence 3445668887 78899999999965
No 282
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=77.12 E-value=0.97 Score=41.76 Aligned_cols=18 Identities=33% Similarity=0.396 Sum_probs=15.4
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
++.+++.||+|+|||+.+
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 467999999999999744
No 283
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=77.00 E-value=1.7 Score=41.24 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=20.6
Q ss_pred HHHHHhcCCC--eEEEccCCCchhHHh
Q 010709 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (503)
Q Consensus 151 ~i~~i~~~~~--vii~~~TGsGKTl~~ 175 (503)
.+..+++|.| ++..|.||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 5666778988 788999999999754
No 284
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=76.98 E-value=1.8 Score=41.39 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=19.2
Q ss_pred HHHHHhcCCC--eEEEccCCCchhHH
Q 010709 151 AMPVALSGRD--LLGCAETGSGKTAA 174 (503)
Q Consensus 151 ~i~~i~~~~~--vii~~~TGsGKTl~ 174 (503)
.+..++.|.+ ++..|.||||||..
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyT 106 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYT 106 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceE
Confidence 4455678887 78899999999964
No 285
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=76.93 E-value=1.8 Score=40.99 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=18.9
Q ss_pred HHHHHhcCCC--eEEEccCCCchhHH
Q 010709 151 AMPVALSGRD--LLGCAETGSGKTAA 174 (503)
Q Consensus 151 ~i~~i~~~~~--vii~~~TGsGKTl~ 174 (503)
.+..+++|.| ++..|+||||||..
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyT 100 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYT 100 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEe
Confidence 3445668887 78899999999965
No 286
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=76.92 E-value=1.7 Score=41.20 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=19.7
Q ss_pred HHHHHhcCCC--eEEEccCCCchhHHh
Q 010709 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (503)
Q Consensus 151 ~i~~i~~~~~--vii~~~TGsGKTl~~ 175 (503)
.+..+++|.+ ++..|+||+|||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 4455678887 788999999999653
No 287
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=76.90 E-value=1.7 Score=41.30 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=18.6
Q ss_pred HHHHhcCCC--eEEEccCCCchhHH
Q 010709 152 MPVALSGRD--LLGCAETGSGKTAA 174 (503)
Q Consensus 152 i~~i~~~~~--vii~~~TGsGKTl~ 174 (503)
+..++.|.+ ++..|+||+|||..
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyT 97 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYT 97 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceE
Confidence 445668887 78899999999964
No 288
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=76.89 E-value=1.2 Score=38.50 Aligned_cols=44 Identities=18% Similarity=0.261 Sum_probs=26.7
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHhcC----CCeEEEccCCCchhHHh
Q 010709 130 PSIMKDIEFHEYTRPTSIQAQAMPVALSG----RDLLGCAETGSGKTAAF 175 (503)
Q Consensus 130 ~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~----~~vii~~~TGsGKTl~~ 175 (503)
..+.+-|+..++ .+..+ ...+..++++ +.+++.||+|+|||..+
T Consensus 28 ~~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 28 RPIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 345555555543 23333 3444444444 34999999999999754
No 289
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=76.86 E-value=1.9 Score=41.84 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=20.6
Q ss_pred HHHHHhcCCC--eEEEccCCCchhHHh
Q 010709 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (503)
Q Consensus 151 ~i~~i~~~~~--vii~~~TGsGKTl~~ 175 (503)
.+..++.|.| ++..|.||||||...
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 5666778988 788999999999754
No 290
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=76.79 E-value=0.93 Score=38.06 Aligned_cols=19 Identities=21% Similarity=0.142 Sum_probs=15.6
Q ss_pred cCCCeEEEccCCCchhHHh
Q 010709 157 SGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~ 175 (503)
.|.-+.++||.|+|||+.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4556899999999999843
No 291
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=76.78 E-value=1.6 Score=42.26 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=18.9
Q ss_pred HHHHhcCCC--eEEEccCCCchhHHh
Q 010709 152 MPVALSGRD--LLGCAETGSGKTAAF 175 (503)
Q Consensus 152 i~~i~~~~~--vii~~~TGsGKTl~~ 175 (503)
+..+++|.+ ++..|.||||||...
T Consensus 147 V~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 147 VQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHhcCCceeEEeecCCCCCCCeEe
Confidence 345668887 788999999999653
No 292
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=76.75 E-value=1.7 Score=41.28 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=19.4
Q ss_pred HHHHHhcCCC--eEEEccCCCchhHHh
Q 010709 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (503)
Q Consensus 151 ~i~~i~~~~~--vii~~~TGsGKTl~~ 175 (503)
.+..+++|.+ ++..|+||||||...
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 3445668887 788999999999653
No 293
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=76.69 E-value=1.7 Score=41.28 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=19.3
Q ss_pred HHHHHhcCCC--eEEEccCCCchhHH
Q 010709 151 AMPVALSGRD--LLGCAETGSGKTAA 174 (503)
Q Consensus 151 ~i~~i~~~~~--vii~~~TGsGKTl~ 174 (503)
.+..+++|.| ++..|+||+|||..
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyT 120 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYT 120 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceE
Confidence 4556678888 78889999999965
No 294
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=76.65 E-value=1.7 Score=41.25 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=19.7
Q ss_pred HHHHHhcCCC--eEEEccCCCchhHHh
Q 010709 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (503)
Q Consensus 151 ~i~~i~~~~~--vii~~~TGsGKTl~~ 175 (503)
.+..+++|.| ++..|+||||||...
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 4455668888 788999999999653
No 295
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=76.55 E-value=1.1 Score=38.55 Aligned_cols=19 Identities=32% Similarity=0.396 Sum_probs=15.9
Q ss_pred cCCCeEEEccCCCchhHHh
Q 010709 157 SGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~ 175 (503)
.|..+++.|+.|+|||+.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4667999999999999843
No 296
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=76.39 E-value=1.5 Score=38.13 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=17.6
Q ss_pred CCCeEEEccCCCchhHHhHHHHHHHHH
Q 010709 158 GRDLLGCAETGSGKTAAFTIPMIQHCV 184 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~~lp~l~~~~ 184 (503)
|.-+.|.||+|+|||+. +-++..+.
T Consensus 22 g~~v~I~G~sGsGKSTl--~~~l~~~~ 46 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTL--SNPLAAAL 46 (208)
T ss_dssp CEEEEEECCTTSCTHHH--HHHHHHHH
T ss_pred CeEEEEECCCCCCHHHH--HHHHHHHH
Confidence 44588999999999983 33444433
No 297
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=76.37 E-value=1.5 Score=38.54 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=15.7
Q ss_pred hcCCCeEEEccCCCchhHH
Q 010709 156 LSGRDLLGCAETGSGKTAA 174 (503)
Q Consensus 156 ~~~~~vii~~~TGsGKTl~ 174 (503)
..|+-++++||.|+|||+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp -CCCEEEEECCTTSCHHHH
T ss_pred CCCcEEEEECCCCCCHHHH
Confidence 3566799999999999984
No 298
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=76.28 E-value=1.7 Score=41.30 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=20.7
Q ss_pred HHHHHhcCCC--eEEEccCCCchhHHh
Q 010709 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (503)
Q Consensus 151 ~i~~i~~~~~--vii~~~TGsGKTl~~ 175 (503)
.+..+++|.| ++..|.||||||...
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 5677788987 788999999999754
No 299
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=76.12 E-value=1.4 Score=41.23 Aligned_cols=16 Identities=25% Similarity=0.247 Sum_probs=14.0
Q ss_pred CeEEEccCCCchhHHh
Q 010709 160 DLLGCAETGSGKTAAF 175 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~ 175 (503)
.++|+||||+|||...
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4899999999999854
No 300
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=76.09 E-value=1.2 Score=38.68 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=16.2
Q ss_pred HHhcCCCeEEEccCCCchhHH
Q 010709 154 VALSGRDLLGCAETGSGKTAA 174 (503)
Q Consensus 154 ~i~~~~~vii~~~TGsGKTl~ 174 (503)
.+..|+-+.+.||+|+|||+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 456788899999999999984
No 301
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=76.03 E-value=0.84 Score=38.71 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=15.2
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
|..+++.|++|||||+..
T Consensus 4 g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999854
No 302
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=75.97 E-value=2.3 Score=39.73 Aligned_cols=50 Identities=14% Similarity=-0.027 Sum_probs=28.7
Q ss_pred cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHH
Q 010709 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVK 215 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~ 215 (503)
.|.-++|+|++|+|||..++- +......+ +..++++.-- .-..|+..++.
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~-ia~~~a~~-------g~~vl~~slE-~s~~~l~~R~~ 116 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALK-QAKNMSDN-------DDVVNLHSLE-MGKKENIKRLI 116 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHH-HHHHHHTT-------TCEEEEEESS-SCHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHH-HHHHHHHc-------CCeEEEEECC-CCHHHHHHHHH
Confidence 455699999999999974433 33333322 3557777632 22334444443
No 303
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=75.95 E-value=1.1 Score=40.43 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=14.5
Q ss_pred CCeEEEccCCCchhHHh
Q 010709 159 RDLLGCAETGSGKTAAF 175 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~ 175 (503)
+.+++.||+|+|||+.+
T Consensus 46 ~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 45999999999999743
No 304
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=75.69 E-value=1.8 Score=41.38 Aligned_cols=24 Identities=29% Similarity=0.551 Sum_probs=18.9
Q ss_pred HHHHHhcCCC--eEEEccCCCchhHH
Q 010709 151 AMPVALSGRD--LLGCAETGSGKTAA 174 (503)
Q Consensus 151 ~i~~i~~~~~--vii~~~TGsGKTl~ 174 (503)
.+..+++|.+ ++..|.||||||..
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCccee
Confidence 3445668887 88899999999964
No 305
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=75.66 E-value=7.3 Score=37.43 Aligned_cols=72 Identities=19% Similarity=0.260 Sum_probs=52.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHh----hCCCcEEEECcHHHHHHHHcCCCCCCC
Q 010709 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (503)
Q Consensus 194 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~ 269 (503)
+.++||.++++.-+..+++.+.+. +..+..++|+....+....+ .+..+|+|+|. .+.. .+++..
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~-Gidip~ 334 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE-----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCAR-GIDVEQ 334 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGTS-SCCCTT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC-----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----cccc-CCCccC
Confidence 468999999999999998888775 36678888887765543333 25688999993 3333 567888
Q ss_pred ccEEEec
Q 010709 270 VSFVILD 276 (503)
Q Consensus 270 ~~~vViD 276 (503)
+++||.-
T Consensus 335 ~~~Vi~~ 341 (412)
T 3fht_A 335 VSVVINF 341 (412)
T ss_dssp EEEEEES
T ss_pred CCEEEEE
Confidence 8888843
No 306
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=75.60 E-value=1 Score=37.72 Aligned_cols=18 Identities=28% Similarity=0.229 Sum_probs=15.0
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
+..++++|+.|+|||+.+
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 456899999999999843
No 307
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=75.58 E-value=2.2 Score=40.61 Aligned_cols=35 Identities=23% Similarity=0.384 Sum_probs=22.5
Q ss_pred CCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 010709 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~ 201 (503)
.-+.++||+|+|||+. +..+..+... .++++++..
T Consensus 158 ~vi~lvG~nGsGKTTl--l~~Lag~l~~------~~G~V~l~g 192 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTS--LGKLAHRLKN------EGTKVLMAA 192 (359)
T ss_dssp EEEEEECCTTSCHHHH--HHHHHHHHHH------TTCCEEEEC
T ss_pred eEEEEEcCCCChHHHH--HHHHHhhccc------cCCEEEEec
Confidence 3478999999999984 4455544432 134565554
No 308
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=75.54 E-value=1.7 Score=41.39 Aligned_cols=25 Identities=24% Similarity=0.504 Sum_probs=19.5
Q ss_pred HHHHHhcCCC--eEEEccCCCchhHHh
Q 010709 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (503)
Q Consensus 151 ~i~~i~~~~~--vii~~~TGsGKTl~~ 175 (503)
.+..++.|.+ ++..|.||||||...
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 4455668887 788999999999643
No 309
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=75.53 E-value=10 Score=37.81 Aligned_cols=40 Identities=20% Similarity=0.134 Sum_probs=24.1
Q ss_pred CeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcc--cHHHH
Q 010709 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP--TRELA 207 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~P--tr~La 207 (503)
.++++|++|+|||+.+ ..+..++... +.+++++.. .+..+
T Consensus 103 vI~ivG~~GvGKTTl~-~kLA~~l~~~-------G~kVllVd~D~~r~aa 144 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTC-SKLAYYYQRK-------GWKTCLICADTFRAGA 144 (504)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHHHHHT-------TCCEEEEEECCSSSHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHHHhC-------CCeEEEEeccccchhH
Confidence 4788999999999854 3233333322 455666653 44444
No 310
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=75.48 E-value=2 Score=35.06 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=16.8
Q ss_pred CeEEEccCCCchhHHhHHHHHHHHH
Q 010709 160 DLLGCAETGSGKTAAFTIPMIQHCV 184 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~~lp~l~~~~ 184 (503)
-.+|.||+|+|||.. +-++.+.+
T Consensus 25 ~~~I~G~NGsGKSti--l~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL--LDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHH
T ss_pred eEEEECCCCCCHHHH--HHHHHHHH
Confidence 378999999999984 44454444
No 311
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=75.36 E-value=8.1 Score=36.31 Aligned_cols=73 Identities=15% Similarity=0.298 Sum_probs=51.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHh----hCCCcEEEECcHHHHHHHHcCCCCCCC
Q 010709 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (503)
Q Consensus 194 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~ 269 (503)
+.++||.++++.-+..+++.+++. ++.+..++|+....+....+ .+..+|+|+|. .+.. .+++..
T Consensus 238 ~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~-Gid~~~ 306 (367)
T 1hv8_A 238 EFYGLVFCKTKRDTKELASMLRDI-----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSR-GIDVND 306 (367)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT-----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHH-HCCCSC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc-----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhc-CCCccc
Confidence 567899999999999988888775 36788888887765443322 24678999993 2222 456777
Q ss_pred ccEEEecc
Q 010709 270 VSFVILDE 277 (503)
Q Consensus 270 ~~~vViDE 277 (503)
+++||.-+
T Consensus 307 ~~~Vi~~~ 314 (367)
T 1hv8_A 307 LNCVINYH 314 (367)
T ss_dssp CSEEEESS
T ss_pred CCEEEEec
Confidence 88887644
No 312
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=75.22 E-value=2.9 Score=37.01 Aligned_cols=19 Identities=26% Similarity=0.153 Sum_probs=15.9
Q ss_pred cCCCeEEEccCCCchhHHh
Q 010709 157 SGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~ 175 (503)
.|.-+++.||+|+|||+.+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp TTSEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCcHHHHH
Confidence 4566999999999999854
No 313
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=75.14 E-value=3.1 Score=36.58 Aligned_cols=17 Identities=35% Similarity=0.370 Sum_probs=14.6
Q ss_pred CeEEEccCCCchhHHhH
Q 010709 160 DLLGCAETGSGKTAAFT 176 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~~ 176 (503)
++++.++.|+|||+.++
T Consensus 8 ~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAML 24 (228)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 48999999999998653
No 314
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=75.13 E-value=1.9 Score=41.42 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=19.4
Q ss_pred HHHHHhcCCC--eEEEccCCCchhHHh
Q 010709 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (503)
Q Consensus 151 ~i~~i~~~~~--vii~~~TGsGKTl~~ 175 (503)
.+..+++|.+ ++..|.||||||...
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 3445668887 888999999999753
No 315
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=75.04 E-value=2.5 Score=38.98 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=16.5
Q ss_pred hcCCCeEEEccCCCchhHHh
Q 010709 156 LSGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 156 ~~~~~vii~~~TGsGKTl~~ 175 (503)
..|.-++|.|++|+|||+..
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~ 52 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFV 52 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHH
Confidence 35667999999999999844
No 316
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=75.00 E-value=1.9 Score=41.84 Aligned_cols=26 Identities=35% Similarity=0.570 Sum_probs=21.0
Q ss_pred HHHHHHhcCCC--eEEEccCCCchhHHh
Q 010709 150 QAMPVALSGRD--LLGCAETGSGKTAAF 175 (503)
Q Consensus 150 ~~i~~i~~~~~--vii~~~TGsGKTl~~ 175 (503)
..+..++.|.+ ++..|.||||||...
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 35667788988 788999999999653
No 317
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=74.94 E-value=5.7 Score=37.96 Aligned_cols=18 Identities=39% Similarity=0.401 Sum_probs=15.3
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
..++++.||+|+|||..+
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 457999999999999754
No 318
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=74.90 E-value=2.4 Score=36.24 Aligned_cols=41 Identities=15% Similarity=0.224 Sum_probs=25.8
Q ss_pred CCCccEEEecchhHH--hhCCCHHHHHHHHHhCCCCCcEEEEEeeC
Q 010709 267 LSRVSFVILDEADRM--LDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (503)
Q Consensus 267 l~~~~~vViDEaH~l--~~~~~~~~~~~il~~~~~~~q~i~~SAT~ 310 (503)
..+.+++|+||+..+ .+..|...+.+++.... .+|+-+.|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~---~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPG---TIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSS---CCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhCCC---cEEEEEeec
Confidence 567789999997655 33346666666666432 245446665
No 319
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=74.61 E-value=1.6 Score=41.12 Aligned_cols=16 Identities=31% Similarity=0.202 Sum_probs=14.0
Q ss_pred CeEEEccCCCchhHHh
Q 010709 160 DLLGCAETGSGKTAAF 175 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~ 175 (503)
-++|+||||+|||..+
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 4889999999999854
No 320
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=74.58 E-value=2.8 Score=35.47 Aligned_cols=18 Identities=33% Similarity=0.259 Sum_probs=15.1
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
+..++++|+.|+|||+..
T Consensus 13 ~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 455899999999999854
No 321
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=74.52 E-value=8 Score=36.81 Aligned_cols=75 Identities=16% Similarity=0.250 Sum_probs=54.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHh----hCCCcEEEECcHHHHHHHHcCCCCCCC
Q 010709 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (503)
Q Consensus 194 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~ 269 (503)
+.++||.++++.-+..+++.+++. +..+..++|+....+....+ .+..+|+|+|. .+. ..+++..
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~-~Gidip~ 311 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE-----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VLA-RGIDIPT 311 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GGS-SSCCCTT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhh-cCCCccc
Confidence 578999999999999888888775 36678888887765443332 24678999993 333 3567888
Q ss_pred ccEEEecchh
Q 010709 270 VSFVILDEAD 279 (503)
Q Consensus 270 ~~~vViDEaH 279 (503)
+++||.-+..
T Consensus 312 ~~~Vi~~~~p 321 (395)
T 3pey_A 312 VSMVVNYDLP 321 (395)
T ss_dssp EEEEEESSCC
T ss_pred CCEEEEcCCC
Confidence 9999875544
No 322
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=74.50 E-value=2.2 Score=41.84 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=19.5
Q ss_pred HHHHHhcCCC--eEEEccCCCchhHHh
Q 010709 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (503)
Q Consensus 151 ~i~~i~~~~~--vii~~~TGsGKTl~~ 175 (503)
.+..++.|.| ++..|.||+|||...
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 3445568887 888999999999653
No 323
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=74.48 E-value=3.5 Score=38.63 Aligned_cols=18 Identities=33% Similarity=0.122 Sum_probs=15.1
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
|.-+++.|++|+|||..+
T Consensus 107 G~i~~i~G~~GsGKT~la 124 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLC 124 (324)
T ss_dssp TSEEEEEESTTSSHHHHH
T ss_pred CcEEEEECCCCCCHhHHH
Confidence 456999999999999754
No 324
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=74.44 E-value=2.7 Score=36.65 Aligned_cols=71 Identities=15% Similarity=0.176 Sum_probs=49.3
Q ss_pred CCcEEEEEcchhhHHHHHHHHHHC--------CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cccc-CCC
Q 010709 374 FPLTIVFVERKTRCDEVSEALVAE--------GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-----VASR-GLD 439 (503)
Q Consensus 374 ~~~~lIF~~~~~~~~~l~~~L~~~--------~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~-Gld 439 (503)
..++||.++++..+.++++.+.+. ++.+..++|+.+..++.+. + .+..+|+|+|. .+.. .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEK---L-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCC---C-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHH---c-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 457999999999999988877653 5788889998764432211 1 23578999993 2223 356
Q ss_pred CCCCCEEEE
Q 010709 440 VMGVAHVVN 448 (503)
Q Consensus 440 ip~v~~VI~ 448 (503)
+..+++||.
T Consensus 148 ~~~~~~lVi 156 (219)
T 1q0u_A 148 VHTAHILVV 156 (219)
T ss_dssp GGGCCEEEE
T ss_pred cCcceEEEE
Confidence 677787774
No 325
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=74.34 E-value=1.4 Score=38.08 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=14.6
Q ss_pred CCeEEEccCCCchhHHh
Q 010709 159 RDLLGCAETGSGKTAAF 175 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~ 175 (503)
..++++|+.|+|||+.+
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46999999999999854
No 326
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=74.19 E-value=2.9 Score=36.28 Aligned_cols=19 Identities=26% Similarity=0.081 Sum_probs=15.7
Q ss_pred cCCCeEEEccCCCchhHHh
Q 010709 157 SGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~ 175 (503)
.|.-+++.|++|+|||+.+
T Consensus 19 ~G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp TTSEEEEECSTTSSHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4556899999999999754
No 327
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=74.15 E-value=6.8 Score=40.75 Aligned_cols=76 Identities=20% Similarity=0.293 Sum_probs=56.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHH---h-hCCCcEEEECcHHHHHHHHcCCCCCCC
Q 010709 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSE---L-RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (503)
Q Consensus 194 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~Ilv~Tp~~l~~~l~~~~~~l~~ 269 (503)
+.++||.++++.-+..+++.+++. ++.+..++++....+.... + .+..+|+|+|. .+. ..+.+.+
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l~-~GlDip~ 513 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI-----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LLR-EGLDIPE 513 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CCS-TTCCCTT
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc-----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hhh-CCcccCC
Confidence 568999999999999888888775 3677778887765443333 2 25689999993 232 3567888
Q ss_pred ccEEEecchhH
Q 010709 270 VSFVILDEADR 280 (503)
Q Consensus 270 ~~~vViDEaH~ 280 (503)
+++||+-+++.
T Consensus 514 v~lVi~~d~d~ 524 (661)
T 2d7d_A 514 VSLVAILDADK 524 (661)
T ss_dssp EEEEEETTTTC
T ss_pred CCEEEEeCccc
Confidence 99999998864
No 328
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=74.11 E-value=1.7 Score=41.42 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=20.0
Q ss_pred HHHHHhcCCC--eEEEccCCCchhHHh
Q 010709 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (503)
Q Consensus 151 ~i~~i~~~~~--vii~~~TGsGKTl~~ 175 (503)
.+..++.|.+ ++..|.||||||...
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 4566778987 788999999999653
No 329
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=73.96 E-value=2.2 Score=36.02 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=13.0
Q ss_pred CeEEEccCCCchhHH
Q 010709 160 DLLGCAETGSGKTAA 174 (503)
Q Consensus 160 ~vii~~~TGsGKTl~ 174 (503)
.+.+.||.|+|||+.
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 368899999999984
No 330
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=73.51 E-value=2 Score=36.20 Aligned_cols=23 Identities=22% Similarity=0.099 Sum_probs=16.9
Q ss_pred CeEEEccCCCchhHHhHHHHHHHHH
Q 010709 160 DLLGCAETGSGKTAAFTIPMIQHCV 184 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~~lp~l~~~~ 184 (503)
-.+|+||+|+|||.. +-++..++
T Consensus 28 ~~~i~G~NGsGKStl--l~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNI--GDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHH--HHHHHHHT
T ss_pred cEEEECCCCCCHHHH--HHHHHHHH
Confidence 478999999999984 44454443
No 331
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=73.46 E-value=3.2 Score=47.79 Aligned_cols=50 Identities=20% Similarity=0.241 Sum_probs=35.0
Q ss_pred CCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q 010709 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 218 (503)
|+-+.|.||.|+|||+.+ ++++...... +..++++.+-.+|-... ++.++
T Consensus 1431 g~~iei~g~~~sGkttl~-~~~~a~~~~~-------g~~~~~i~~e~~~~~~~---~~~~G 1480 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLT-LQVIAAAQRE-------GKTCAFIDAEHALDPIY---ARKLG 1480 (1706)
T ss_dssp TSEEEEECSTTSSHHHHH-HHHHHHHHHT-------TCCEEEECTTSCCCHHH---HHHTT
T ss_pred CCEEEEEcCCCCCHHHHH-HHHHHHHHhc-------CCeEEEEecCCCCCHHH---HHHcC
Confidence 456999999999999876 5555544443 67788888776665443 55555
No 332
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=73.42 E-value=1.9 Score=40.03 Aligned_cols=26 Identities=15% Similarity=0.111 Sum_probs=19.3
Q ss_pred cCCCeEEEccCCCchhHHhHHHHHHHHH
Q 010709 157 SGRDLLGCAETGSGKTAAFTIPMIQHCV 184 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~~lp~l~~~~ 184 (503)
.|+-+.|+||+|+|||+. +-++..+.
T Consensus 125 ~Ge~vaIvGpsGsGKSTL--l~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSML--CNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHH--HHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHH--HHHHhhhc
Confidence 567799999999999983 44454444
No 333
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=73.38 E-value=3.3 Score=39.30 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=24.4
Q ss_pred cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcc
Q 010709 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 202 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~P 202 (503)
.|.-++|.|++|+|||+.++. +....... +.+++++.-
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~-la~~~~~~-------g~~vlyi~~ 97 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALH-AVANAQAA-------GGIAAFIDA 97 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHH-HHHHHHHT-------TCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHH-HHHHHHhC-------CCeEEEEEC
Confidence 355699999999999985433 33333332 455777763
No 334
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=73.34 E-value=1.5 Score=37.42 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=15.9
Q ss_pred cCCCeEEEccCCCchhHHh
Q 010709 157 SGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~ 175 (503)
.+..+++.|++|||||+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4556999999999999854
No 335
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=73.33 E-value=3.5 Score=39.20 Aligned_cols=38 Identities=21% Similarity=0.197 Sum_probs=25.0
Q ss_pred cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcc
Q 010709 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 202 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~P 202 (503)
.|.-++|.|++|+|||+.++ .+....... +.+++++.-
T Consensus 62 ~G~ii~I~G~pGsGKTtLal-~la~~~~~~-------g~~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTL-QVIAAAQRE-------GKTCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHH-HHHHHHHHT-------TCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHH-HHHHHHHHC-------CCeEEEEeC
Confidence 45669999999999998653 333333332 345777764
No 336
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=73.28 E-value=13 Score=35.37 Aligned_cols=71 Identities=15% Similarity=0.246 Sum_probs=52.1
Q ss_pred CCCcEEEEEcchhhHHHHHHHHHH----CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-c----c-ccCCCCCC
Q 010709 373 PFPLTIVFVERKTRCDEVSEALVA----EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-V----A-SRGLDVMG 442 (503)
Q Consensus 373 ~~~~~lIF~~~~~~~~~l~~~L~~----~~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-~----~-~~Gldip~ 442 (503)
..+++||.|+++..+.++++.+.+ .++.+..++|+....++...+. ..+|+|+|. . + ...+....
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 345799999999999998888765 3678999999998776655543 468999993 1 1 22455667
Q ss_pred CCEEEE
Q 010709 443 VAHVVN 448 (503)
Q Consensus 443 v~~VI~ 448 (503)
+++||.
T Consensus 163 ~~~vIi 168 (394)
T 1fuu_A 163 IKMFIL 168 (394)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777764
No 337
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=73.25 E-value=1.9 Score=41.45 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=18.1
Q ss_pred HHHhcCCC--eEEEccCCCchhHHh
Q 010709 153 PVALSGRD--LLGCAETGSGKTAAF 175 (503)
Q Consensus 153 ~~i~~~~~--vii~~~TGsGKTl~~ 175 (503)
..++.|.+ ++..|+||||||...
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHhhcCceeeEeeecCCCCCCCeEe
Confidence 34567887 788999999999653
No 338
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=73.21 E-value=13 Score=36.33 Aligned_cols=42 Identities=21% Similarity=0.166 Sum_probs=24.7
Q ss_pred CeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc--ccHHHHH
Q 010709 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA--PTRELAQ 208 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~--Ptr~La~ 208 (503)
.++++|+.|+|||+...- +..++... .|.+++++. |.+..+.
T Consensus 102 vI~ivG~~GvGKTT~a~~-LA~~l~~~------~G~kVllvd~D~~r~~a~ 145 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGK-LGKFLREK------HKKKVLVVSADVYRPAAI 145 (433)
T ss_dssp EEEEECSTTSSHHHHHHH-HHHHHHHT------SCCCEEEEECCCSSTTHH
T ss_pred EEEEECCCCCCHHHHHHH-HHHHHHHh------cCCeEEEEecCCCCccHH
Confidence 477889999999986532 33333321 145566665 5554443
No 339
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=73.15 E-value=2.4 Score=40.62 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=20.2
Q ss_pred HHHHHhcCCC--eEEEccCCCchhHHh
Q 010709 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (503)
Q Consensus 151 ~i~~i~~~~~--vii~~~TGsGKTl~~ 175 (503)
.+..+++|.+ ++..|.||+|||...
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 5566778887 788999999999653
No 340
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=72.99 E-value=14 Score=37.21 Aligned_cols=71 Identities=10% Similarity=0.155 Sum_probs=48.4
Q ss_pred CCcEEEEEcchhhHHHHHHHHHHC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-c----cccC-C-CCCC
Q 010709 374 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-V----ASRG-L-DVMG 442 (503)
Q Consensus 374 ~~~~lIF~~~~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-~----~~~G-l-dip~ 442 (503)
.+++||.++++.-+.++++.+.+. ++.+..+||+.+...+...+. ....|+|+|. . +..+ + .+..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 567999999999999888888765 899999999987665433332 1378999993 2 2223 3 5777
Q ss_pred CCEEEE
Q 010709 443 VAHVVN 448 (503)
Q Consensus 443 v~~VI~ 448 (503)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888775
No 341
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=72.96 E-value=2.1 Score=36.87 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=15.7
Q ss_pred cCCCeEEEccCCCchhHHh
Q 010709 157 SGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~ 175 (503)
.|.-+.+.|+.|+|||+.+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4556899999999999853
No 342
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=72.88 E-value=1.5 Score=37.37 Aligned_cols=17 Identities=18% Similarity=0.180 Sum_probs=14.4
Q ss_pred CCeEEEccCCCchhHHh
Q 010709 159 RDLLGCAETGSGKTAAF 175 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~ 175 (503)
.-++++|++|+|||+..
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45899999999999854
No 343
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=72.73 E-value=9.5 Score=36.51 Aligned_cols=73 Identities=15% Similarity=0.214 Sum_probs=52.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHh----hCCCcEEEECcHHHHHHHHcCCCCCCC
Q 010709 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (503)
Q Consensus 194 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~ 269 (503)
+.++||.++++.-+..+++.++..+ +.+..++|+....+....+ .+..+|+|+|. .+. ..+++..
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~~-----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~-~Gidip~ 326 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDLG-----YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LLT-RGIDIQA 326 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHHT-----CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CSS-SSCCCTT
T ss_pred CCcEEEEEecHHHHHHHHHHHHhcC-----CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----ccc-cCCCccC
Confidence 4689999999999999988888763 6677888887765443322 24678999993 222 2567778
Q ss_pred ccEEEecc
Q 010709 270 VSFVILDE 277 (503)
Q Consensus 270 ~~~vViDE 277 (503)
+++||.-+
T Consensus 327 ~~~Vi~~~ 334 (400)
T 1s2m_A 327 VNVVINFD 334 (400)
T ss_dssp EEEEEESS
T ss_pred CCEEEEeC
Confidence 88888543
No 344
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=72.67 E-value=1.7 Score=37.21 Aligned_cols=19 Identities=21% Similarity=0.232 Sum_probs=15.8
Q ss_pred cCCCeEEEccCCCchhHHh
Q 010709 157 SGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~ 175 (503)
.+.-++++|++|+|||+..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4556999999999999854
No 345
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=72.64 E-value=7.8 Score=35.19 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=17.8
Q ss_pred HhcCCCeEEEccCCCchhHHhH
Q 010709 155 ALSGRDLLGCAETGSGKTAAFT 176 (503)
Q Consensus 155 i~~~~~vii~~~TGsGKTl~~~ 176 (503)
+..|.-++|.||+|+|||+.+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~ 48 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLAL 48 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHH
Confidence 4467779999999999998543
No 346
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=72.56 E-value=2.9 Score=41.57 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=21.9
Q ss_pred CeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEE
Q 010709 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil 200 (503)
-+.++|++|+|||+. +..|..++.. .++.+++.
T Consensus 295 VI~LVGpNGSGKTTL--l~~LAgll~~------~~G~V~l~ 327 (503)
T 2yhs_A 295 VILMVGVNGVGKTTT--IGKLARQFEQ------QGKSVMLA 327 (503)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHHHH------TTCCEEEE
T ss_pred EEEEECCCcccHHHH--HHHHHHHhhh------cCCeEEEe
Confidence 478999999999984 4445444432 14556665
No 347
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=72.55 E-value=1.8 Score=36.29 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=14.1
Q ss_pred CeEEEccCCCchhHHh
Q 010709 160 DLLGCAETGSGKTAAF 175 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~ 175 (503)
.++++|++|+|||+.+
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 6899999999999854
No 348
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=72.49 E-value=1.5 Score=40.40 Aligned_cols=16 Identities=38% Similarity=0.405 Sum_probs=13.9
Q ss_pred CeEEEccCCCchhHHh
Q 010709 160 DLLGCAETGSGKTAAF 175 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~ 175 (503)
-++++|++|+|||+.+
T Consensus 35 livl~G~sGsGKSTla 50 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEECCTTSCTHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4899999999999854
No 349
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.45 E-value=1.3 Score=43.18 Aligned_cols=54 Identities=22% Similarity=0.325 Sum_probs=29.0
Q ss_pred CcCCcccCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhcCCCeEEEccCCCchhHHh
Q 010709 119 PIESFTDMCLHPSIMKDIEFH---EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 119 ~~~~~~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~ 175 (503)
|-.+|++++=-+...+.|... -+..|--++...+ ...+.+++.||+|+|||+.+
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHH
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHH
Confidence 445788885445555555321 1112221211111 12356999999999999743
No 350
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=72.42 E-value=2.6 Score=37.87 Aligned_cols=19 Identities=37% Similarity=0.450 Sum_probs=16.8
Q ss_pred cCCCeEEEccCCCchhHHh
Q 010709 157 SGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~ 175 (503)
.|+.+++.|++|+|||+..
T Consensus 47 ~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp TTCCEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4889999999999999853
No 351
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=72.25 E-value=1.6 Score=37.06 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=14.5
Q ss_pred CCeEEEccCCCchhHHh
Q 010709 159 RDLLGCAETGSGKTAAF 175 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~ 175 (503)
..+++.|++|||||+.+
T Consensus 4 ~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45899999999999854
No 352
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=72.23 E-value=1.6 Score=36.24 Aligned_cols=17 Identities=29% Similarity=0.313 Sum_probs=15.0
Q ss_pred CCeEEEccCCCchhHHh
Q 010709 159 RDLLGCAETGSGKTAAF 175 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~ 175 (503)
+++++.|+.|||||++.
T Consensus 8 ~~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLA 24 (168)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57999999999999854
No 353
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=72.09 E-value=1.7 Score=37.33 Aligned_cols=19 Identities=26% Similarity=0.158 Sum_probs=15.7
Q ss_pred cCCCeEEEccCCCchhHHh
Q 010709 157 SGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~ 175 (503)
.+..+++.|+.|+|||+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3556899999999999854
No 354
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=72.08 E-value=1.1 Score=40.68 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=15.0
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
.+.+++.||+|+|||+.+
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 356999999999999754
No 355
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=72.08 E-value=1.9 Score=39.85 Aligned_cols=16 Identities=25% Similarity=0.104 Sum_probs=13.6
Q ss_pred CeEEEccCCCchhHHh
Q 010709 160 DLLGCAETGSGKTAAF 175 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~ 175 (503)
.+++.||+|+|||..+
T Consensus 38 ~lLl~GppGtGKT~la 53 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQC 53 (293)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999743
No 356
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=72.00 E-value=1.7 Score=36.96 Aligned_cols=16 Identities=19% Similarity=0.245 Sum_probs=13.5
Q ss_pred CeEEEccCCCchhHHh
Q 010709 160 DLLGCAETGSGKTAAF 175 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~ 175 (503)
-++++||+|+|||+..
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4789999999999843
No 357
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=71.95 E-value=3.2 Score=38.86 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=13.9
Q ss_pred CCeEEEccCCCchhHHh
Q 010709 159 RDLLGCAETGSGKTAAF 175 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~ 175 (503)
+-+.++|++|+|||+..
T Consensus 106 ~vI~ivG~~G~GKTT~~ 122 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSL 122 (320)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34788999999999854
No 358
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=71.58 E-value=1.7 Score=37.83 Aligned_cols=16 Identities=19% Similarity=0.289 Sum_probs=13.7
Q ss_pred CeEEEccCCCchhHHh
Q 010709 160 DLLGCAETGSGKTAAF 175 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~ 175 (503)
.+++.|+.|||||+.+
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999854
No 359
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=71.55 E-value=2.1 Score=36.19 Aligned_cols=17 Identities=24% Similarity=0.165 Sum_probs=14.5
Q ss_pred CCeEEEccCCCchhHHh
Q 010709 159 RDLLGCAETGSGKTAAF 175 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~ 175 (503)
..++++|++|||||+.+
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35899999999999854
No 360
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=71.54 E-value=1.9 Score=39.90 Aligned_cols=16 Identities=38% Similarity=0.349 Sum_probs=14.2
Q ss_pred CeEEEccCCCchhHHh
Q 010709 160 DLLGCAETGSGKTAAF 175 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~ 175 (503)
.+++.||+|+|||+.+
T Consensus 49 ~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEESCSSSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 5999999999999754
No 361
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=71.52 E-value=1.6 Score=36.99 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=13.7
Q ss_pred CeEEEccCCCchhHHh
Q 010709 160 DLLGCAETGSGKTAAF 175 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~ 175 (503)
.+++.|+.|+|||+..
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999854
No 362
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=71.44 E-value=4.8 Score=33.61 Aligned_cols=15 Identities=27% Similarity=0.045 Sum_probs=12.9
Q ss_pred CeEEEccCCCchhHH
Q 010709 160 DLLGCAETGSGKTAA 174 (503)
Q Consensus 160 ~vii~~~TGsGKTl~ 174 (503)
-+.++|+.|+|||+.
T Consensus 6 ~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 378999999999984
No 363
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=71.21 E-value=4.7 Score=40.03 Aligned_cols=18 Identities=33% Similarity=0.313 Sum_probs=15.3
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
..++++.||+|+|||..+
T Consensus 201 ~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 456999999999999854
No 364
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=71.13 E-value=1.4 Score=39.04 Aligned_cols=19 Identities=32% Similarity=0.370 Sum_probs=12.0
Q ss_pred hcCCCeEEEccCCCchhHH
Q 010709 156 LSGRDLLGCAETGSGKTAA 174 (503)
Q Consensus 156 ~~~~~vii~~~TGsGKTl~ 174 (503)
..|.-+.+.||+|+|||+.
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp ECCCEEEEECSCC----CH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3566789999999999984
No 365
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=71.13 E-value=2 Score=41.47 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=13.7
Q ss_pred CeEEEccCCCchhHHh
Q 010709 160 DLLGCAETGSGKTAAF 175 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~ 175 (503)
-++|+||||+|||..+
T Consensus 4 ~i~i~GptgsGKttla 19 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEEECSSSSHHHHH
T ss_pred EEEEECcchhhHHHHH
Confidence 3789999999999754
No 366
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=71.10 E-value=1.9 Score=37.80 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=15.1
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
+..+++.|++|||||+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 446899999999999854
No 367
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=71.04 E-value=4.9 Score=40.22 Aligned_cols=19 Identities=32% Similarity=0.377 Sum_probs=16.3
Q ss_pred cCCCeEEEccCCCchhHHh
Q 010709 157 SGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~ 175 (503)
.+.+++|.|+||||||.+.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGV 184 (512)
T ss_dssp GSCSEEEECCTTSSHHHHH
T ss_pred cCceEEEECCCCCCHHHHH
Confidence 3568999999999999864
No 368
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=70.92 E-value=2 Score=37.38 Aligned_cols=29 Identities=14% Similarity=0.055 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCCCeEEEccCCCchhHHh
Q 010709 146 SIQAQAMPVALSGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 146 ~~Q~~~i~~i~~~~~vii~~~TGsGKTl~~ 175 (503)
..++.. ..+..+..+++.|++|+|||+..
T Consensus 14 ~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 14 RSERTE-LRNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp HHHHHH-HHTSSCEEEEEECSTTSSHHHHH
T ss_pred HHHhhc-ccCCCCCEEEEECCCCCCHHHHH
Confidence 334444 23345667899999999999854
No 369
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=70.92 E-value=5 Score=39.45 Aligned_cols=69 Identities=14% Similarity=0.104 Sum_probs=45.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEE
Q 010709 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFV 273 (503)
Q Consensus 194 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~v 273 (503)
+.++||.+|++.-+..+++.+++. ++.+..++|.........-..+..+|+|+| +.+.. .+++. +++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT-----~v~e~-GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA-----GKSVVVLNRKTFEREYPTIKQKKPDFILAT-----DIAEM-GANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT-----TCCEEECCSSSCC--------CCCSEEEES-----SSTTC-CTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc-----CCCEEEecchhHHHHHhhhcCCCceEEEEC-----Chhhe-eeccC-ceEE
Confidence 467999999999999998888775 367888888443322222223568999999 33333 45666 7787
Q ss_pred E
Q 010709 274 I 274 (503)
Q Consensus 274 V 274 (503)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 6
No 370
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=70.90 E-value=3.3 Score=39.33 Aligned_cols=39 Identities=23% Similarity=0.254 Sum_probs=25.5
Q ss_pred CCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcccH
Q 010709 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR 204 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Ptr 204 (503)
|.-++|.||+|+|||+.. +.+...+... +..++++..-.
T Consensus 61 G~i~~I~GppGsGKSTLa-l~la~~~~~~-------gg~VlyId~E~ 99 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLA-LHAIAEAQKM-------GGVAAFIDAEH 99 (356)
T ss_dssp TEEEEEEESTTSSHHHHH-HHHHHHHHHT-------TCCEEEEESSC
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHHHHhc-------CCeEEEEeccc
Confidence 456899999999999754 3344333332 45677776543
No 371
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=70.87 E-value=2.4 Score=36.69 Aligned_cols=24 Identities=21% Similarity=0.062 Sum_probs=17.1
Q ss_pred CCCeEEEccCCCchhHHhHHHHHHHH
Q 010709 158 GRDLLGCAETGSGKTAAFTIPMIQHC 183 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~~lp~l~~~ 183 (503)
+.-+.|.||+|||||+. +-++..+
T Consensus 6 ~~~i~i~G~~GsGKSTl--~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTL--AQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHH--HHHHHHH
T ss_pred cEEEEEECCCCCCHHHH--HHHHHHH
Confidence 44578999999999984 3344443
No 372
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=70.85 E-value=3.1 Score=39.49 Aligned_cols=18 Identities=33% Similarity=0.108 Sum_probs=14.9
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
|.-+.|.||.|+|||+..
T Consensus 131 G~i~~I~G~~GsGKTTL~ 148 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLA 148 (349)
T ss_dssp SEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 455899999999999843
No 373
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=70.70 E-value=11 Score=36.22 Aligned_cols=73 Identities=15% Similarity=0.278 Sum_probs=52.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHh----hCCCcEEEECcHHHHHHHHcCCCCCCC
Q 010709 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (503)
Q Consensus 194 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~ 269 (503)
..++||.++++.-+..+++.+.+. ++.+..++|+....+....+ .+..+|+|+|. .+.. .+++..
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~-Gidi~~ 344 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA-----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VWAR-GLDVPQ 344 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GGSS-SCCCTT
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC-----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhhC-cCCccc
Confidence 357999999999999888888774 36678888887765433322 25688999993 3333 567888
Q ss_pred ccEEEecc
Q 010709 270 VSFVILDE 277 (503)
Q Consensus 270 ~~~vViDE 277 (503)
+++||.-+
T Consensus 345 v~~Vi~~~ 352 (410)
T 2j0s_A 345 VSLIINYD 352 (410)
T ss_dssp EEEEEESS
T ss_pred CCEEEEEC
Confidence 88888643
No 374
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=70.66 E-value=2.3 Score=37.78 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=15.2
Q ss_pred cCCCeEEEccCCCchhH
Q 010709 157 SGRDLLGCAETGSGKTA 173 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl 173 (503)
.|.-+.+.||.|+|||+
T Consensus 30 ~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKST 46 (235)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 56678999999999998
No 375
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=70.57 E-value=2.1 Score=35.59 Aligned_cols=17 Identities=18% Similarity=0.221 Sum_probs=14.4
Q ss_pred CCeEEEccCCCchhHHh
Q 010709 159 RDLLGCAETGSGKTAAF 175 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~ 175 (503)
+.+++.|+.|||||++.
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35899999999999854
No 376
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=70.54 E-value=2 Score=37.59 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=14.8
Q ss_pred CCeEEEccCCCchhHHh
Q 010709 159 RDLLGCAETGSGKTAAF 175 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~ 175 (503)
..+++.|++|+|||+..
T Consensus 6 ~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 6 LKVMISGAPASGKGTQC 22 (222)
T ss_dssp CCEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999854
No 377
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=70.50 E-value=1.9 Score=37.60 Aligned_cols=16 Identities=25% Similarity=0.254 Sum_probs=13.7
Q ss_pred CeEEEccCCCchhHHh
Q 010709 160 DLLGCAETGSGKTAAF 175 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~ 175 (503)
.+++.|+.|+|||+.+
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999854
No 378
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=70.43 E-value=4.1 Score=38.52 Aligned_cols=44 Identities=14% Similarity=0.015 Sum_probs=24.6
Q ss_pred CCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccc
Q 010709 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPT 203 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~Pt 203 (503)
|.-++|.|++|+|||..++. +..... .+....+.+.+++|+.-.
T Consensus 122 G~i~~I~G~~GsGKTtla~~-la~~~~-~~~~~gg~~~~vlyi~~E 165 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHT-LCVTAQ-LPGAGGYPGGKIIFIDTE 165 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHH-HHHHTT-SCBTTTBCCCEEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHH-HHHHHh-cccccCCCCCeEEEEECC
Confidence 34589999999999974432 222211 111111235667777643
No 379
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=70.39 E-value=1.8 Score=38.19 Aligned_cols=18 Identities=22% Similarity=0.082 Sum_probs=15.1
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
...+++.|++|+|||+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 356899999999999854
No 380
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=70.33 E-value=7.6 Score=36.22 Aligned_cols=23 Identities=9% Similarity=0.160 Sum_probs=17.2
Q ss_pred eEEEccCCCchhHHhHHHHHHHHHh
Q 010709 161 LLGCAETGSGKTAAFTIPMIQHCVA 185 (503)
Q Consensus 161 vii~~~TGsGKTl~~~lp~l~~~~~ 185 (503)
+.|.||+|||||+. +-.+..++.
T Consensus 95 igI~GpsGSGKSTl--~~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTT--SRVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHH--HHHHHHHHT
T ss_pred EEEECCCCCCHHHH--HHHHHHHhc
Confidence 78999999999984 445555544
No 381
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=70.30 E-value=1.7 Score=38.67 Aligned_cols=73 Identities=15% Similarity=0.246 Sum_probs=49.1
Q ss_pred CCCcEEEEEcchhhHHHHHHHHHHC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cccc---CCCC
Q 010709 373 PFPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-----VASR---GLDV 440 (503)
Q Consensus 373 ~~~~~lIF~~~~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~---Gldi 440 (503)
...++||.+++++.+.++++.+.+. ++.+..++|+.....+ ......+..+|+|+|. .+.. .+++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKK---FGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTT---TSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHH---hhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 3446999999999999999988775 6677777665322111 1122345678999992 2222 4788
Q ss_pred CCCCEEEE
Q 010709 441 MGVAHVVN 448 (503)
Q Consensus 441 p~v~~VI~ 448 (503)
.++++||.
T Consensus 174 ~~~~~lVi 181 (245)
T 3dkp_A 174 ASVEWLVV 181 (245)
T ss_dssp TTCCEEEE
T ss_pred ccCcEEEE
Confidence 88888775
No 382
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=70.25 E-value=1.9 Score=38.75 Aligned_cols=15 Identities=33% Similarity=0.390 Sum_probs=13.4
Q ss_pred CeEEEccCCCchhHH
Q 010709 160 DLLGCAETGSGKTAA 174 (503)
Q Consensus 160 ~vii~~~TGsGKTl~ 174 (503)
.+++.||+|+|||+.
T Consensus 51 g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHL 65 (254)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 499999999999974
No 383
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=69.92 E-value=3.1 Score=36.14 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=13.7
Q ss_pred eEEEccCCCchhHHhH
Q 010709 161 LLGCAETGSGKTAAFT 176 (503)
Q Consensus 161 vii~~~TGsGKTl~~~ 176 (503)
+++.||+||||++++.
T Consensus 3 Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6889999999998653
No 384
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=69.67 E-value=2.3 Score=42.08 Aligned_cols=18 Identities=44% Similarity=0.599 Sum_probs=15.3
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
++.+++.||+|+|||+.+
T Consensus 63 ~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp TCEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCcCCHHHHH
Confidence 357999999999999754
No 385
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=69.54 E-value=1.9 Score=36.53 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=13.9
Q ss_pred CeEEEccCCCchhHHh
Q 010709 160 DLLGCAETGSGKTAAF 175 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~ 175 (503)
.+++.|++|||||++.
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999854
No 386
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=69.30 E-value=2.1 Score=36.83 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=14.4
Q ss_pred CCeEEEccCCCchhHHh
Q 010709 159 RDLLGCAETGSGKTAAF 175 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~ 175 (503)
..++++|++|+|||+..
T Consensus 21 ~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35899999999999854
No 387
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=69.26 E-value=10 Score=32.26 Aligned_cols=31 Identities=19% Similarity=0.341 Sum_probs=18.0
Q ss_pred CcEEEECcHHHHHHHHcCCCCCCCccEEEecchh
Q 010709 246 VSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD 279 (503)
Q Consensus 246 ~~Ilv~Tp~~l~~~l~~~~~~l~~~~~vViDEaH 279 (503)
.+++-+.++.+.+.+..- ..++++||||=.-
T Consensus 55 ~~~~~~~~~~l~~~l~~l---~~~yD~viiD~~~ 85 (206)
T 4dzz_A 55 FDVFTAASEKDVYGIRKD---LADYDFAIVDGAG 85 (206)
T ss_dssp SEEEECCSHHHHHTHHHH---TTTSSEEEEECCS
T ss_pred CcEEecCcHHHHHHHHHh---cCCCCEEEEECCC
Confidence 445555556665555431 2358899998543
No 388
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=69.17 E-value=2.7 Score=39.57 Aligned_cols=17 Identities=29% Similarity=0.315 Sum_probs=14.7
Q ss_pred CCeEEEccCCCchhHHh
Q 010709 159 RDLLGCAETGSGKTAAF 175 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~ 175 (503)
..+++.||+|+|||+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 56999999999999843
No 389
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=69.10 E-value=3.3 Score=36.26 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=15.2
Q ss_pred CCCeEEEccCCCchhHHhH
Q 010709 158 GRDLLGCAETGSGKTAAFT 176 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~~ 176 (503)
.+-+++.||+||||++++.
T Consensus 29 ~kiI~llGpPGsGKgTqa~ 47 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCE 47 (217)
T ss_dssp CEEEEEECCTTCCHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3457889999999998653
No 390
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=69.05 E-value=1.9 Score=36.31 Aligned_cols=19 Identities=26% Similarity=0.309 Sum_probs=15.3
Q ss_pred cCCCeEEEccCCCchhHHh
Q 010709 157 SGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~ 175 (503)
.|..+++.|+.|+|||+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3456889999999999853
No 391
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=68.97 E-value=3.1 Score=35.86 Aligned_cols=15 Identities=40% Similarity=0.426 Sum_probs=13.3
Q ss_pred eEEEccCCCchhHHh
Q 010709 161 LLGCAETGSGKTAAF 175 (503)
Q Consensus 161 vii~~~TGsGKTl~~ 175 (503)
.++.|+.|+|||+.+
T Consensus 8 ~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 8 CLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEeCCCCCHHHHH
Confidence 689999999999854
No 392
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=68.87 E-value=2.8 Score=34.60 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=18.8
Q ss_pred cCCCeEEEccCCCchhHHhHHHHHHHHH
Q 010709 157 SGRDLLGCAETGSGKTAAFTIPMIQHCV 184 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~~lp~l~~~~ 184 (503)
.|.-+.+.||.|+|||+ ++-++..+.
T Consensus 32 ~Ge~v~L~G~nGaGKTT--Llr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTT--LTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHH--HHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHH--HHHHHHHhC
Confidence 45568899999999998 344554443
No 393
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=68.82 E-value=2.2 Score=36.74 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=13.8
Q ss_pred CeEEEccCCCchhHHh
Q 010709 160 DLLGCAETGSGKTAAF 175 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~ 175 (503)
.++++|+.|||||+..
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999854
No 394
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=68.62 E-value=4 Score=30.65 Aligned_cols=37 Identities=27% Similarity=0.381 Sum_probs=32.1
Q ss_pred CCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCC
Q 010709 373 PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRN 409 (503)
Q Consensus 373 ~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~ 409 (503)
+..++++||.+-..+...+..|...|+++..+.||+.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 4457999999988899999999999999999988864
No 395
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=68.57 E-value=3.9 Score=31.11 Aligned_cols=37 Identities=24% Similarity=0.239 Sum_probs=32.6
Q ss_pred CCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCC
Q 010709 373 PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRN 409 (503)
Q Consensus 373 ~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~ 409 (503)
+..++++||.+-..+...+..|+..|+++..+.||+.
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 4457999999988899999999999999999999864
No 396
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=68.52 E-value=13 Score=31.84 Aligned_cols=96 Identities=10% Similarity=0.134 Sum_probs=52.5
Q ss_pred ChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchhhHHH-HHHHHHH---CCCeEEEEcCCCCHHHHHHHHHHHhcC
Q 010709 348 SENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDE-VSEALVA---EGLHAVALHGGRNQSDRESALRDFRNG 423 (503)
Q Consensus 348 ~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~~~~~-l~~~L~~---~~~~v~~lh~~~~~~~r~~~~~~f~~g 423 (503)
....|.......+........ .....+++||.|+++..+.+ +.+.+.. .++.+..++|+.....+...+. +
T Consensus 57 tGsGKT~~~~~~~~~~~~~~~-~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~ 131 (216)
T 3b6e_A 57 TGSGKTRVAVYIAKDHLDKKK-KASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----K 131 (216)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-HTTCCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----H
T ss_pred CCCCHHHHHHHHHHHHHhhcc-cccCCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----c
Confidence 445555544443333222211 11235679999999988877 5555544 3678888998765433222221 2
Q ss_pred CCcEEEEcc-cc----cc-------CCCCCCCCEEEE
Q 010709 424 STNILVATD-VA----SR-------GLDVMGVAHVVN 448 (503)
Q Consensus 424 ~~~vLvaT~-~~----~~-------Gldip~v~~VI~ 448 (503)
...|+|+|. .+ .. ++.+.++++||.
T Consensus 132 ~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIi 168 (216)
T 3b6e_A 132 SCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIII 168 (216)
T ss_dssp HCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEE
T ss_pred CCCEEEECHHHHHHHHhccCcccccccchhcccEEEE
Confidence 478999993 22 22 255666777664
No 397
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=68.52 E-value=2.1 Score=37.90 Aligned_cols=18 Identities=22% Similarity=0.254 Sum_probs=15.3
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
+..+++.|++|+|||+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456999999999999854
No 398
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=68.39 E-value=2.2 Score=36.55 Aligned_cols=16 Identities=19% Similarity=0.277 Sum_probs=13.5
Q ss_pred CeEEEccCCCchhHHh
Q 010709 160 DLLGCAETGSGKTAAF 175 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~ 175 (503)
.+++.|++|+|||+..
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3789999999999853
No 399
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=68.32 E-value=1.6 Score=41.37 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=15.2
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
..++++.||+|+|||..+
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 456999999999999743
No 400
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=68.25 E-value=3.3 Score=38.74 Aligned_cols=14 Identities=36% Similarity=0.299 Sum_probs=12.7
Q ss_pred eEEEccCCCchhHH
Q 010709 161 LLGCAETGSGKTAA 174 (503)
Q Consensus 161 vii~~~TGsGKTl~ 174 (503)
++|.|+.|+|||+.
T Consensus 7 ~~i~G~~GaGKTTl 20 (318)
T 1nij_A 7 TLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEESSSSSCHHH
T ss_pred EEEEecCCCCHHHH
Confidence 78999999999983
No 401
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=68.09 E-value=6.1 Score=40.00 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=19.1
Q ss_pred CCCeEEEccCCCchhHHhHHHHHHHHH
Q 010709 158 GRDLLGCAETGSGKTAAFTIPMIQHCV 184 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~~lp~l~~~~ 184 (503)
..+++|.|.||||||.+. -.++..++
T Consensus 214 ~pHlLIaG~TGSGKS~~L-~tlI~sLl 239 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGV-NAMLLSIL 239 (574)
T ss_dssp SCCEEEECCTTSSHHHHH-HHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHH-HHHHHHHH
Confidence 357999999999999865 34444444
No 402
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=68.01 E-value=1.9 Score=36.34 Aligned_cols=18 Identities=22% Similarity=0.089 Sum_probs=11.1
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
+..+++.|+.|+|||+.+
T Consensus 5 ~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CCEEEEECCC----CHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999854
No 403
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=67.90 E-value=4.3 Score=30.25 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=32.2
Q ss_pred CCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCC
Q 010709 373 PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRN 409 (503)
Q Consensus 373 ~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~ 409 (503)
+..++++||.+-..+...+..|...|+++..+.||+.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 4457999999988899999999999999999998864
No 404
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=67.89 E-value=5.2 Score=38.21 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=24.8
Q ss_pred cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcc
Q 010709 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 202 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~P 202 (503)
.|.-++|.|++|+|||..+ +.+....... +..++|+..
T Consensus 73 ~G~li~I~G~pGsGKTtla-l~la~~~~~~-------g~~vlyi~~ 110 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLA-LAIVAQAQKA-------GGTCAFIDA 110 (366)
T ss_dssp TTSEEEEEESTTSSHHHHH-HHHHHHHHHT-------TCCEEEEES
T ss_pred CCcEEEEEcCCCCChHHHH-HHHHHHHHHC-------CCeEEEEEC
Confidence 3456999999999999754 3344443332 345777764
No 405
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=67.86 E-value=2.3 Score=37.30 Aligned_cols=17 Identities=18% Similarity=0.130 Sum_probs=14.3
Q ss_pred CCeEEEccCCCchhHHh
Q 010709 159 RDLLGCAETGSGKTAAF 175 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~ 175 (503)
..+.+.|++|||||+..
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999854
No 406
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=67.83 E-value=3.3 Score=39.63 Aligned_cols=38 Identities=13% Similarity=0.142 Sum_probs=22.6
Q ss_pred CCeEEEEc---CCCCHHHHHHHHHHHhc---CCCcEEEEccccc
Q 010709 398 GLHAVALH---GGRNQSDRESALRDFRN---GSTNILVATDVAS 435 (503)
Q Consensus 398 ~~~v~~lh---~~~~~~~r~~~~~~f~~---g~~~vLvaT~~~~ 435 (503)
...++.+. ++++...+..+++.+.+ ...-|++.|--.+
T Consensus 303 ~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~ 346 (365)
T 3qf7_A 303 RLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE 346 (365)
T ss_dssp TCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH
Confidence 45566654 57888888777666543 2345666664333
No 407
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=67.81 E-value=3.6 Score=35.54 Aligned_cols=24 Identities=25% Similarity=0.192 Sum_probs=17.6
Q ss_pred CeEEEccCCCchhHHhHHHHHHHHHh
Q 010709 160 DLLGCAETGSGKTAAFTIPMIQHCVA 185 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~~lp~l~~~~~ 185 (503)
-.+|.||+|+|||.. +-++.+++.
T Consensus 25 ~~~I~G~NgsGKSti--l~ai~~~l~ 48 (203)
T 3qks_A 25 INLIIGQNGSGKSSL--LDAILVGLY 48 (203)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHHH
T ss_pred eEEEEcCCCCCHHHH--HHHHHHHhc
Confidence 478999999999984 445555444
No 408
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=67.79 E-value=2.4 Score=35.08 Aligned_cols=16 Identities=19% Similarity=0.003 Sum_probs=13.7
Q ss_pred CeEEEccCCCchhHHh
Q 010709 160 DLLGCAETGSGKTAAF 175 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~ 175 (503)
.+++.|+.|||||++.
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3789999999999854
No 409
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=67.76 E-value=11 Score=39.20 Aligned_cols=76 Identities=20% Similarity=0.279 Sum_probs=55.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHH---hh-CCCcEEEECcHHHHHHHHcCCCCCCC
Q 010709 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSE---LR-GGVSIVVATPGRFLDHLQQGNTSLSR 269 (503)
Q Consensus 194 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~Ilv~Tp~~l~~~l~~~~~~l~~ 269 (503)
+.++||.++++.-+..+++.+.+. ++.+..++++....+.... +. +..+|+|+| +.+. ..+.+..
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT-----~~l~-~GlDip~ 507 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH-----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGI-----NLLR-EGLDIPE 507 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES-----CCCC-TTCCCTT
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc-----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEcc-----Chhh-cCccCCC
Confidence 568999999999999888888775 3667778887665443333 22 468999999 2222 3567888
Q ss_pred ccEEEecchhH
Q 010709 270 VSFVILDEADR 280 (503)
Q Consensus 270 ~~~vViDEaH~ 280 (503)
+++||+=+++.
T Consensus 508 v~lVI~~d~d~ 518 (664)
T 1c4o_A 508 VSLVAILDADK 518 (664)
T ss_dssp EEEEEETTTTS
T ss_pred CCEEEEeCCcc
Confidence 99999888763
No 410
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=67.68 E-value=2.2 Score=36.83 Aligned_cols=19 Identities=21% Similarity=0.162 Sum_probs=15.7
Q ss_pred cCCCeEEEccCCCchhHHh
Q 010709 157 SGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~ 175 (503)
.+.-+++.|+.|+|||+..
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 3556899999999999854
No 411
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=67.54 E-value=2.1 Score=37.03 Aligned_cols=18 Identities=28% Similarity=0.196 Sum_probs=15.0
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
+.-+++.|+.|||||+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 445899999999999854
No 412
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=67.42 E-value=4.4 Score=30.58 Aligned_cols=36 Identities=28% Similarity=0.381 Sum_probs=31.3
Q ss_pred CCCcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCC
Q 010709 373 PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGR 408 (503)
Q Consensus 373 ~~~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~ 408 (503)
+..++++||.+-..+...+..|.+.|++++.+.||+
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 445799999998888999999999999998888876
No 413
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=67.40 E-value=12 Score=39.75 Aligned_cols=76 Identities=9% Similarity=0.162 Sum_probs=54.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhc------cCCCceEEEEECCccHHHHHHHhh---------CCCcEEEECcHHHHH
Q 010709 194 GPLALVLAPTRELAQQIEKEVKALSR------SLDSFKTAIVVGGTNIAEQRSELR---------GGVSIVVATPGRFLD 258 (503)
Q Consensus 194 ~~~~lil~Ptr~La~q~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~Ilv~Tp~~l~~ 258 (503)
++.+||.+|++.-+..+++.+.+... ...++.+..++|+....++...+. +..+|+|+| +
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT-----~ 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVIST-----N 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEEC-----T
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeC-----c
Confidence 56899999999999988888875332 224678889999988766554442 246899999 3
Q ss_pred HHHcCCCCCCCccEEEe
Q 010709 259 HLQQGNTSLSRVSFVIL 275 (503)
Q Consensus 259 ~l~~~~~~l~~~~~vVi 275 (503)
.+.. .+.+..+++||-
T Consensus 378 iae~-GidIp~v~~VId 393 (773)
T 2xau_A 378 IAET-SLTIDGIVYVVD 393 (773)
T ss_dssp HHHH-TCCCTTEEEEEE
T ss_pred HHHh-CcCcCCeEEEEe
Confidence 3333 456777877764
No 414
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=67.18 E-value=3 Score=37.06 Aligned_cols=17 Identities=24% Similarity=0.409 Sum_probs=15.3
Q ss_pred cCCCeEEEccCCCchhH
Q 010709 157 SGRDLLGCAETGSGKTA 173 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl 173 (503)
.|.-+.+.||.|+|||+
T Consensus 30 ~Ge~~~i~G~nGsGKST 46 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSS 46 (237)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56779999999999998
No 415
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=67.17 E-value=2.4 Score=38.35 Aligned_cols=17 Identities=18% Similarity=0.104 Sum_probs=14.4
Q ss_pred CCeEEEccCCCchhHHh
Q 010709 159 RDLLGCAETGSGKTAAF 175 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~ 175 (503)
.-++++|++|+|||+.+
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 34899999999999854
No 416
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=67.16 E-value=3.5 Score=35.98 Aligned_cols=17 Identities=29% Similarity=0.288 Sum_probs=15.4
Q ss_pred cCCCeEEEccCCCchhH
Q 010709 157 SGRDLLGCAETGSGKTA 173 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl 173 (503)
.|.-+.+.||.|+|||+
T Consensus 34 ~Ge~~~iiG~NGsGKST 50 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTT 50 (214)
T ss_dssp TTCCEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57779999999999998
No 417
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=66.82 E-value=2.5 Score=35.84 Aligned_cols=15 Identities=33% Similarity=0.233 Sum_probs=13.2
Q ss_pred eEEEccCCCchhHHh
Q 010709 161 LLGCAETGSGKTAAF 175 (503)
Q Consensus 161 vii~~~TGsGKTl~~ 175 (503)
+++.|+.|||||+..
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 689999999999854
No 418
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=66.73 E-value=8.7 Score=37.83 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=18.2
Q ss_pred HHhcCCCeEEEccCCCchhHHh
Q 010709 154 VALSGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 154 ~i~~~~~vii~~~TGsGKTl~~ 175 (503)
.+..|+.+++.|+.|.|||...
T Consensus 147 pi~kGq~~~i~G~sGvGKTtL~ 168 (473)
T 1sky_E 147 PYIKGGKIGLFGGAGVGKTVLI 168 (473)
T ss_dssp CEETTCEEEEECCSSSCHHHHH
T ss_pred hhccCCEEEEECCCCCCccHHH
Confidence 3447888999999999999754
No 419
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=66.70 E-value=2.5 Score=36.43 Aligned_cols=16 Identities=31% Similarity=0.135 Sum_probs=13.4
Q ss_pred CeEEEccCCCchhHHh
Q 010709 160 DLLGCAETGSGKTAAF 175 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~ 175 (503)
.+.+.|+.|||||+..
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3679999999999843
No 420
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=66.70 E-value=6.7 Score=38.57 Aligned_cols=37 Identities=16% Similarity=0.086 Sum_probs=24.3
Q ss_pred cCCCeEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 010709 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~lil~ 201 (503)
.|.-++|.|++|+|||..+ +-+....... +..++|+.
T Consensus 196 ~G~liiIaG~pG~GKTtla-l~ia~~~a~~-------g~~vl~fS 232 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFA-LKQAKNMSDN-------DDVVNLHS 232 (444)
T ss_dssp SSCEEEEEECSSSSHHHHH-HHHHHHHHHT-------TCEEEEEC
T ss_pred CCcEEEEEeCCCCChHHHH-HHHHHHHHHc-------CCEEEEEE
Confidence 3445999999999999754 3333333332 45677776
No 421
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=66.54 E-value=2.4 Score=36.91 Aligned_cols=16 Identities=13% Similarity=0.098 Sum_probs=13.7
Q ss_pred CeEEEccCCCchhHHh
Q 010709 160 DLLGCAETGSGKTAAF 175 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~ 175 (503)
.+++.|++|||||++.
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999854
No 422
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=66.44 E-value=1.4 Score=38.14 Aligned_cols=19 Identities=26% Similarity=-0.013 Sum_probs=15.1
Q ss_pred cCCCeEEEccCCCchhHHh
Q 010709 157 SGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~ 175 (503)
.+.-+.|.|++|+|||+.+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3445889999999999843
No 423
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=66.40 E-value=2.6 Score=35.89 Aligned_cols=15 Identities=27% Similarity=0.282 Sum_probs=13.2
Q ss_pred eEEEccCCCchhHHh
Q 010709 161 LLGCAETGSGKTAAF 175 (503)
Q Consensus 161 vii~~~TGsGKTl~~ 175 (503)
+++.|+.|+|||++.
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 689999999999854
No 424
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=66.36 E-value=2.5 Score=36.57 Aligned_cols=19 Identities=16% Similarity=0.118 Sum_probs=15.8
Q ss_pred cCCCeEEEccCCCchhHHh
Q 010709 157 SGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~ 175 (503)
.+.-+++.|+.|||||+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3556999999999999854
No 425
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=66.11 E-value=3.5 Score=39.53 Aligned_cols=35 Identities=14% Similarity=0.228 Sum_probs=23.1
Q ss_pred CeEEEEc---CCCCHHHHHHHHHHHhc--CCCcEEEEccc
Q 010709 399 LHAVALH---GGRNQSDRESALRDFRN--GSTNILVATDV 433 (503)
Q Consensus 399 ~~v~~lh---~~~~~~~r~~~~~~f~~--g~~~vLvaT~~ 433 (503)
..++.+. ++++...+..+.+.+.+ ....|+++|--
T Consensus 306 ~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~ 345 (371)
T 3auy_A 306 VECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHH 345 (371)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESC
T ss_pred CCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEECh
Confidence 5666654 67888888888877754 22457766643
No 426
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=66.06 E-value=4.7 Score=39.50 Aligned_cols=17 Identities=35% Similarity=0.346 Sum_probs=14.4
Q ss_pred CCeEEEccCCCchhHHh
Q 010709 159 RDLLGCAETGSGKTAAF 175 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~ 175 (503)
+.++++|++|+|||+.+
T Consensus 100 ~vI~ivG~~GvGKTTla 116 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTA 116 (432)
T ss_dssp CCEEEECCSSSSTTHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36889999999999854
No 427
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=66.05 E-value=2.5 Score=36.38 Aligned_cols=16 Identities=19% Similarity=0.218 Sum_probs=13.5
Q ss_pred CeEEEccCCCchhHHh
Q 010709 160 DLLGCAETGSGKTAAF 175 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~ 175 (503)
.+.|.|+.|+|||+..
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999843
No 428
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=65.77 E-value=6 Score=33.93 Aligned_cols=17 Identities=29% Similarity=-0.064 Sum_probs=14.1
Q ss_pred CCeEEEccCCCchhHHh
Q 010709 159 RDLLGCAETGSGKTAAF 175 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~ 175 (503)
.-+.+.|+.|+|||+..
T Consensus 23 ~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34889999999999843
No 429
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=65.60 E-value=2.7 Score=36.91 Aligned_cols=15 Identities=33% Similarity=0.328 Sum_probs=13.3
Q ss_pred eEEEccCCCchhHHh
Q 010709 161 LLGCAETGSGKTAAF 175 (503)
Q Consensus 161 vii~~~TGsGKTl~~ 175 (503)
+++.|+.|||||++.
T Consensus 3 I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 789999999999854
No 430
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=65.60 E-value=4.8 Score=44.02 Aligned_cols=97 Identities=12% Similarity=0.191 Sum_probs=56.0
Q ss_pred cccCCCHH-HHHHHHHHcCceEEecCCCCCCCCCcCCcccCC-C-CHHHHHHHHHCCCC----CCcHHHHHHHHHHh-c-
Q 010709 87 RVLRFNPE-QIEEVRLRLNVDVTVASGSVPAPAPIESFTDMC-L-HPSIMKDIEFHEYT----RPTSIQAQAMPVAL-S- 157 (503)
Q Consensus 87 ~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-l-~~~l~~~l~~~~~~----~~~~~Q~~~i~~i~-~- 157 (503)
.+..+++. -+..++.++......+..+ +..-.+..|..++ + ++...+........ ..+.+=..|+..+. .
T Consensus 64 ~L~~LnE~svL~nL~~Ry~~~~IYTy~G-~iLIaVNPyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~ 142 (1052)
T 4anj_A 64 SLMYLNEATLLHNIKVRYSKDRIYTYVA-NILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLK 142 (1052)
T ss_dssp GSSSCSHHHHHHHHHHHHHTTCCEEEET-TEEEEECCSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHcCCCcEEeEC-CEEEEECCCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhC
Confidence 34445554 4678888876544333222 2223445566664 3 56666665443322 23445556666665 3
Q ss_pred -CCCeEEEccCCCchhHHhHHHHHHHHHh
Q 010709 158 -GRDLLGCAETGSGKTAAFTIPMIQHCVA 185 (503)
Q Consensus 158 -~~~vii~~~TGsGKTl~~~lp~l~~~~~ 185 (503)
++.+||.|++|+|||.+.- -++.++..
T Consensus 143 ~nQsIiiSGESGAGKTestK-~im~yLa~ 170 (1052)
T 4anj_A 143 LSQSIIVSGESGAGKTENTK-FVLRYLTE 170 (1052)
T ss_dssp CCEEEEEECSTTSSHHHHHH-HHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHH-HHHHHHHH
Confidence 3459999999999998763 35666543
No 431
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=65.45 E-value=3.3 Score=37.77 Aligned_cols=17 Identities=24% Similarity=0.259 Sum_probs=15.2
Q ss_pred cCCCeEEEccCCCchhH
Q 010709 157 SGRDLLGCAETGSGKTA 173 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl 173 (503)
.|.-+.+.||.|+|||+
T Consensus 33 ~Ge~~~iiGpnGsGKST 49 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKST 49 (275)
T ss_dssp TTSEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56678999999999998
No 432
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=65.27 E-value=2.7 Score=36.67 Aligned_cols=17 Identities=29% Similarity=0.429 Sum_probs=14.5
Q ss_pred CCeEEEccCCCchhHHh
Q 010709 159 RDLLGCAETGSGKTAAF 175 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~ 175 (503)
..+++.|++|||||++.
T Consensus 6 ~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45899999999999854
No 433
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=65.24 E-value=3.5 Score=36.42 Aligned_cols=17 Identities=41% Similarity=0.554 Sum_probs=15.3
Q ss_pred cCCCeEEEccCCCchhH
Q 010709 157 SGRDLLGCAETGSGKTA 173 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl 173 (503)
.|.-+.+.||.|+|||+
T Consensus 33 ~Ge~~~i~G~nGsGKST 49 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTS 49 (229)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56778999999999998
No 434
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=65.04 E-value=2.8 Score=37.44 Aligned_cols=18 Identities=22% Similarity=0.098 Sum_probs=15.0
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
+..+++.|+.|+|||+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456999999999999843
No 435
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=65.01 E-value=3.5 Score=37.60 Aligned_cols=15 Identities=33% Similarity=0.390 Sum_probs=13.4
Q ss_pred CeEEEccCCCchhHH
Q 010709 160 DLLGCAETGSGKTAA 174 (503)
Q Consensus 160 ~vii~~~TGsGKTl~ 174 (503)
.+++.||+|+|||+.
T Consensus 75 gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHL 89 (278)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCcChHHHH
Confidence 499999999999974
No 436
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=64.83 E-value=3.6 Score=37.21 Aligned_cols=17 Identities=41% Similarity=0.503 Sum_probs=15.4
Q ss_pred cCCCeEEEccCCCchhH
Q 010709 157 SGRDLLGCAETGSGKTA 173 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl 173 (503)
.|.-+.+.||.|+|||+
T Consensus 45 ~Ge~~~i~G~nGsGKST 61 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKST 61 (260)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56779999999999998
No 437
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=64.79 E-value=3.4 Score=36.36 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=15.0
Q ss_pred cCCCeEEEccCCCchhH
Q 010709 157 SGRDLLGCAETGSGKTA 173 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl 173 (503)
.|.-+.+.||.|+|||+
T Consensus 29 ~Ge~~~iiG~nGsGKST 45 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKST 45 (224)
T ss_dssp TTCEEEEEECTTSCHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56678899999999998
No 438
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=64.74 E-value=6.1 Score=28.97 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=30.9
Q ss_pred CcEEEEEcchhhHHHHHHHHHHCCCeEEEEcCCCC
Q 010709 375 PLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRN 409 (503)
Q Consensus 375 ~~~lIF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~ 409 (503)
.++++||.+-..+...+..|...|+.+..+.||+.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 67999999988889999999999999878888864
No 439
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=64.68 E-value=3.2 Score=42.66 Aligned_cols=14 Identities=21% Similarity=0.430 Sum_probs=13.5
Q ss_pred CeEEEccCCCchhH
Q 010709 160 DLLGCAETGSGKTA 173 (503)
Q Consensus 160 ~vii~~~TGsGKTl 173 (503)
++++.||+|+|||.
T Consensus 329 ~vLL~GppGtGKT~ 342 (595)
T 3f9v_A 329 HILIIGDPGTAKSQ 342 (595)
T ss_dssp CEEEEESSCCTHHH
T ss_pred ceEEECCCchHHHH
Confidence 89999999999996
No 440
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=64.59 E-value=9.9 Score=39.58 Aligned_cols=68 Identities=12% Similarity=0.173 Sum_probs=46.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhh-CCCcEEEECcHHHHHHHHcCCCCCCCccE
Q 010709 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSF 272 (503)
Q Consensus 194 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~ 272 (503)
+.++||.+|++.-+..+++.+++. ++.+..++|.. .......+. +..+|+|+| +.+.. .+++. +++
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~-----g~~v~~lHg~e-R~~v~~~F~~g~~~VLVaT-----dv~e~-GIDip-v~~ 476 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA-----GKRVIQLNRKS-YDTEYPKCKNGDWDFVITT-----DISEM-GANFG-ASR 476 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSSS-HHHHGGGGGTCCCSEEEEC-----GGGGT-TCCCC-CSE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC-----CCeEEEeChHH-HHHHHHHHHCCCceEEEEC-----chhhc-ceeeC-CcE
Confidence 567999999999999888887764 46788888853 333333333 568999999 33333 45566 777
Q ss_pred EE
Q 010709 273 VI 274 (503)
Q Consensus 273 vV 274 (503)
||
T Consensus 477 VI 478 (673)
T 2wv9_A 477 VI 478 (673)
T ss_dssp EE
T ss_pred EE
Confidence 66
No 441
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=64.57 E-value=3.7 Score=36.81 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=15.3
Q ss_pred cCCCeEEEccCCCchhH
Q 010709 157 SGRDLLGCAETGSGKTA 173 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl 173 (503)
.|.-+.+.||.|+|||+
T Consensus 34 ~Ge~~~i~G~nGsGKST 50 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKST 50 (247)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56778999999999998
No 442
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=64.47 E-value=2.9 Score=37.32 Aligned_cols=17 Identities=24% Similarity=0.208 Sum_probs=14.7
Q ss_pred CCeEEEccCCCchhHHh
Q 010709 159 RDLLGCAETGSGKTAAF 175 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~ 175 (503)
..+++.|+.|+|||++.
T Consensus 30 ~~I~l~G~~GsGKsT~a 46 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQS 46 (243)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45999999999999854
No 443
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=64.42 E-value=22 Score=37.90 Aligned_cols=71 Identities=10% Similarity=0.155 Sum_probs=48.2
Q ss_pred CCcEEEEEcchhhHHHHHHHHHHC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-c----cccC-C-CCCC
Q 010709 374 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-V----ASRG-L-DVMG 442 (503)
Q Consensus 374 ~~~~lIF~~~~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-~----~~~G-l-dip~ 442 (503)
.+++||.|+++..+.++++.+.+. ++.+..+||+.+...+...+. +..+|+|+|. . +..+ + .+.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 568999999999999988887765 899999999997665433332 2578999993 2 2222 3 5566
Q ss_pred CCEEEE
Q 010709 443 VAHVVN 448 (503)
Q Consensus 443 v~~VI~ 448 (503)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788775
No 444
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=64.33 E-value=2.5 Score=35.48 Aligned_cols=16 Identities=31% Similarity=0.221 Sum_probs=13.2
Q ss_pred CeEEEccCCCchhHHh
Q 010709 160 DLLGCAETGSGKTAAF 175 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~ 175 (503)
-+.|+|++|+|||+..
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999843
No 445
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=64.31 E-value=9.6 Score=35.11 Aligned_cols=16 Identities=25% Similarity=0.339 Sum_probs=13.4
Q ss_pred CeEEEccCCCchhHHh
Q 010709 160 DLLGCAETGSGKTAAF 175 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~ 175 (503)
.++++|++|+|||+..
T Consensus 100 vi~i~G~~G~GKTT~~ 115 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTA 115 (297)
T ss_dssp EEEEECSSCSSTTHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999854
No 446
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=64.30 E-value=4.4 Score=38.54 Aligned_cols=19 Identities=37% Similarity=0.504 Sum_probs=15.5
Q ss_pred cCCC--eEEEccCCCchhHHh
Q 010709 157 SGRD--LLGCAETGSGKTAAF 175 (503)
Q Consensus 157 ~~~~--vii~~~TGsGKTl~~ 175 (503)
.|.+ ++..|.||||||...
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4776 689999999999653
No 447
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=64.28 E-value=6.2 Score=36.43 Aligned_cols=68 Identities=12% Similarity=0.102 Sum_probs=48.8
Q ss_pred CCcEEEEEcchhhHHHHHHHHHHC-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc-----c-c-cCCCCC
Q 010709 374 FPLTIVFVERKTRCDEVSEALVAE-----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDV-----A-S-RGLDVM 441 (503)
Q Consensus 374 ~~~~lIF~~~~~~~~~l~~~L~~~-----~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~-~-~Gldip 441 (503)
...+||.+++++.|.++++.+... ++.+..++++.....+. ....+|||+|.- + . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 346999999999999998888763 46778888876532211 346789999942 1 1 356788
Q ss_pred CCCEEEE
Q 010709 442 GVAHVVN 448 (503)
Q Consensus 442 ~v~~VI~ 448 (503)
.+++||.
T Consensus 235 ~l~~lVl 241 (300)
T 3fmo_B 235 KIKVFVL 241 (300)
T ss_dssp GCSEEEE
T ss_pred hceEEEE
Confidence 8898875
No 448
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=64.25 E-value=3.5 Score=40.66 Aligned_cols=18 Identities=28% Similarity=0.301 Sum_probs=15.1
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
.+.+++.||+|+|||+.+
T Consensus 167 ~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 356999999999999743
No 449
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=64.03 E-value=3.8 Score=36.97 Aligned_cols=17 Identities=35% Similarity=0.429 Sum_probs=15.2
Q ss_pred cCCCeEEEccCCCchhH
Q 010709 157 SGRDLLGCAETGSGKTA 173 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl 173 (503)
.|.-+.+.||.|+|||+
T Consensus 32 ~Ge~~~liG~nGsGKST 48 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKST 48 (257)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56678899999999998
No 450
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=63.90 E-value=3.4 Score=40.52 Aligned_cols=18 Identities=33% Similarity=0.423 Sum_probs=15.4
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
.+++++.||+|+|||+.+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 467999999999999843
No 451
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=63.70 E-value=14 Score=37.00 Aligned_cols=71 Identities=10% Similarity=0.203 Sum_probs=50.5
Q ss_pred CCcEEEEEcchhhHHHHHHHHHHC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-cc----ccC-C-CCCC
Q 010709 374 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VA----SRG-L-DVMG 442 (503)
Q Consensus 374 ~~~~lIF~~~~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~----~~G-l-dip~ 442 (503)
.+++||.|+++.-+.++++.+.+. ++.+..++|+.+...+...+. +..+|+|+|. .+ ..+ + .+..
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 567999999999988888877765 899999999997554433322 1478999993 22 222 3 5666
Q ss_pred CCEEEE
Q 010709 443 VAHVVN 448 (503)
Q Consensus 443 v~~VI~ 448 (503)
+++||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 787775
No 452
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=63.54 E-value=59 Score=30.54 Aligned_cols=16 Identities=25% Similarity=0.246 Sum_probs=13.8
Q ss_pred CeEEEccCCCchhHHh
Q 010709 160 DLLGCAETGSGKTAAF 175 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~ 175 (503)
.++++|++|+|||+.+
T Consensus 81 ~I~i~G~~G~GKSTl~ 96 (355)
T 3p32_A 81 RVGITGVPGVGKSTAI 96 (355)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999854
No 453
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=63.44 E-value=5.9 Score=40.73 Aligned_cols=22 Identities=32% Similarity=0.312 Sum_probs=18.3
Q ss_pred HHhcCCCeEEEccCCCchhHHh
Q 010709 154 VALSGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 154 ~i~~~~~vii~~~TGsGKTl~~ 175 (503)
.+..+..+++.||+|+|||+.+
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHHH
Confidence 4457888999999999999843
No 454
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=67.31 E-value=1.5 Score=36.69 Aligned_cols=73 Identities=16% Similarity=0.270 Sum_probs=46.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHh----hCCCcEEEECcHHHHHHHHcCCCCCCC
Q 010709 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (503)
Q Consensus 194 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~ 269 (503)
+.++||.++++.-+..+++.++.. ++.+..++|+....+....+ .+..+|+|+| .. +.. .+++..
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT-~~----~~~-Gid~~~ 98 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA-----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT-DV----AAR-GIDIPD 98 (170)
Confidence 467899999999888888877765 35667777776544332222 2357899999 22 222 345666
Q ss_pred ccEEEecc
Q 010709 270 VSFVILDE 277 (503)
Q Consensus 270 ~~~vViDE 277 (503)
+++||.-+
T Consensus 99 ~~~Vi~~~ 106 (170)
T 2yjt_D 99 VSHVFNFD 106 (170)
Confidence 77766543
No 455
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=63.39 E-value=3.9 Score=37.09 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=15.2
Q ss_pred cCCCeEEEccCCCchhH
Q 010709 157 SGRDLLGCAETGSGKTA 173 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl 173 (503)
.|.-+.+.||.|+|||+
T Consensus 36 ~Ge~~~liG~nGsGKST 52 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKST 52 (266)
T ss_dssp TTCEEEEECCTTSCHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 56678999999999998
No 456
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=63.21 E-value=4.8 Score=37.03 Aligned_cols=15 Identities=27% Similarity=0.341 Sum_probs=13.1
Q ss_pred eEEEccCCCchhHHh
Q 010709 161 LLGCAETGSGKTAAF 175 (503)
Q Consensus 161 vii~~~TGsGKTl~~ 175 (503)
+.|+|++|+|||+.+
T Consensus 34 i~I~G~sGsGKSTla 48 (290)
T 1odf_A 34 IFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 789999999999854
No 457
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=63.13 E-value=4 Score=36.32 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=15.1
Q ss_pred cCCCeEEEccCCCchhH
Q 010709 157 SGRDLLGCAETGSGKTA 173 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl 173 (503)
.|.-+.+.||.|+|||+
T Consensus 31 ~Ge~~~l~G~nGsGKST 47 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTT 47 (240)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56678899999999998
No 458
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=63.09 E-value=4.2 Score=37.88 Aligned_cols=26 Identities=15% Similarity=0.092 Sum_probs=18.2
Q ss_pred CCCeEEEccCCCchhHHhHHHHHHHHHh
Q 010709 158 GRDLLGCAETGSGKTAAFTIPMIQHCVA 185 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~~lp~l~~~~~ 185 (503)
|.-+.|.||+|+|||+. +-++..++.
T Consensus 90 g~ivgI~G~sGsGKSTL--~~~L~gll~ 115 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTT--ARVLQALLA 115 (312)
T ss_dssp CEEEEEECCTTSCHHHH--HHHHHHHHH
T ss_pred CEEEEEECCCCchHHHH--HHHHHhhcc
Confidence 34488999999999984 444554443
No 459
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=63.07 E-value=4.2 Score=36.87 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=15.2
Q ss_pred cCCCeEEEccCCCchhH
Q 010709 157 SGRDLLGCAETGSGKTA 173 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl 173 (503)
.|.-+.+.||.|+|||+
T Consensus 45 ~Ge~~~l~G~NGsGKST 61 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKST 61 (267)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56678999999999998
No 460
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=63.06 E-value=6.6 Score=43.97 Aligned_cols=55 Identities=5% Similarity=-0.029 Sum_probs=34.0
Q ss_pred ChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcchh-hHHHHHHHHHHCCCeEEEEc
Q 010709 348 SENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKT-RCDEVSEALVAEGLHAVALH 405 (503)
Q Consensus 348 ~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lIF~~~~~-~~~~l~~~L~~~~~~v~~lh 405 (503)
........+...+...... ...+.+.+.|.+.+.. .+..+...|.+.|+.+....
T Consensus 319 ~~~~Ea~~ia~~I~~l~~~---~g~~~~diAVL~R~~~~~~~~i~~~L~~~gIP~~~~~ 374 (1166)
T 3u4q_B 319 NRRAELEGIAREIHALVRE---KGYRYKDVAILARQPEDYKDMVKEVFADYEIPYFIDG 374 (1166)
T ss_dssp SHHHHHHHHHHHHHHHHHT---SCCCGGGEEEEESCGGGTHHHHHHHHHHTTCCEEESS
T ss_pred ChHHHHHHHHHHHHHHHHh---cCCChhheEEEeCChHHHHHHHHHHHHHcCCCEEECC
Confidence 3344444555555443321 1123345888888874 78889999999999876543
No 461
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=62.81 E-value=3.4 Score=36.86 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=15.1
Q ss_pred cCCCeEEEccCCCchhH
Q 010709 157 SGRDLLGCAETGSGKTA 173 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl 173 (503)
.|.-+.+.||.|+|||+
T Consensus 27 ~Ge~~~i~G~nGsGKST 43 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKST 43 (243)
T ss_dssp TTEEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56678999999999998
No 462
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=62.81 E-value=9.4 Score=41.69 Aligned_cols=95 Identities=20% Similarity=0.238 Sum_probs=51.8
Q ss_pred cCCCHH-HHHHHHHHcCceEEecCCCCCCCCCcCCcccCC-CCHHHHHHHHHCCCC--CC--cHHHHHHHHHHh-cC--C
Q 010709 89 LRFNPE-QIEEVRLRLNVDVTVASGSVPAPAPIESFTDMC-LHPSIMKDIEFHEYT--RP--TSIQAQAMPVAL-SG--R 159 (503)
Q Consensus 89 ~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-l~~~l~~~l~~~~~~--~~--~~~Q~~~i~~i~-~~--~ 159 (503)
...++. -+..++.++......+..+ ...-.+..|..++ .++...+........ .| +.+=..|+..++ .+ +
T Consensus 95 ~~l~e~~vl~nL~~Ry~~~~iYTy~G-~ilvavNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~Q 173 (1010)
T 1g8x_A 95 SYLNEPAVFHNLRVRYNQDLIYTYSG-LFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQ 173 (1010)
T ss_dssp SSCCHHHHHHHHHHHHTTTCCEEEET-TEEEEECCSSCCSCCSHHHHHHHTTCCTTTSCCCHHHHHHHHHHHHHHHTCCE
T ss_pred hcccHHHHHHHHHHHHhhCCceeccC-ceeEEecCCccccCCCHHHHHHhcCCCccCCCccHHHHHHHHHHHHHhcCCCe
Confidence 344443 4678888876544333222 2222344455555 345555554433222 23 344455666655 23 4
Q ss_pred CeEEEccCCCchhHHhHHHHHHHHHh
Q 010709 160 DLLGCAETGSGKTAAFTIPMIQHCVA 185 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~~lp~l~~~~~ 185 (503)
.+||+|+.|+|||.+.- -++.++..
T Consensus 174 sIiisGESGAGKTe~~K-~i~~yla~ 198 (1010)
T 1g8x_A 174 SLLITGESGAGKTENTK-KVIQYLAS 198 (1010)
T ss_dssp EEEEEESTTSSHHHHHH-HHHHHHHH
T ss_pred EEEEeCCCCCCcchHHH-HHHHHHHH
Confidence 49999999999998753 34555443
No 463
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=62.76 E-value=4.1 Score=36.86 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=15.0
Q ss_pred cCCCeEEEccCCCchhH
Q 010709 157 SGRDLLGCAETGSGKTA 173 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl 173 (503)
.|.-+.+.||.|+|||+
T Consensus 31 ~Ge~~~liG~nGsGKST 47 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKST 47 (262)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56678899999999998
No 464
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=62.71 E-value=3.1 Score=35.57 Aligned_cols=16 Identities=25% Similarity=0.187 Sum_probs=13.7
Q ss_pred CeEEEccCCCchhHHh
Q 010709 160 DLLGCAETGSGKTAAF 175 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~ 175 (503)
.+.|.|++|||||+..
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3889999999999853
No 465
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=62.62 E-value=20 Score=37.34 Aligned_cols=70 Identities=9% Similarity=0.186 Sum_probs=49.9
Q ss_pred CcEEEEEcchhhHHHHHHHHHHC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-----ccccC-C-CCCCC
Q 010709 375 PLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-----VASRG-L-DVMGV 443 (503)
Q Consensus 375 ~~~lIF~~~~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G-l-dip~v 443 (503)
+++||.++++..+.+.++.+.+. ++.+..++|+.+...+...+. ...+|+|+|. .+..| + ++..+
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIV----ENNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHH----HTCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhc----cCCCEEEECHHHHHHHHhcCcccccccc
Confidence 67999999999998888888765 789999999886543332222 2489999993 22333 3 56677
Q ss_pred CEEEE
Q 010709 444 AHVVN 448 (503)
Q Consensus 444 ~~VI~ 448 (503)
++||.
T Consensus 138 ~~vVi 142 (696)
T 2ykg_A 138 TLMIF 142 (696)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88775
No 466
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=62.61 E-value=8.2 Score=46.77 Aligned_cols=47 Identities=13% Similarity=0.157 Sum_probs=30.0
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHH----HHHhcCCCeEEEccCCCchhHHhHH
Q 010709 130 PSIMKDIEFHEYTRPTSIQAQAM----PVALSGRDLLGCAETGSGKTAAFTI 177 (503)
Q Consensus 130 ~~l~~~l~~~~~~~~~~~Q~~~i----~~i~~~~~vii~~~TGsGKTl~~~l 177 (503)
..+.+.+...++. +.+.+..-+ +.+..++.++++||||+|||.++-+
T Consensus 892 ~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 892 QCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 4455556666664 445443322 3334566699999999999997643
No 467
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=62.38 E-value=4.5 Score=36.28 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=15.2
Q ss_pred cCCCeEEEccCCCchhH
Q 010709 157 SGRDLLGCAETGSGKTA 173 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl 173 (503)
.|.-+.+.||.|+|||+
T Consensus 28 ~Ge~~~l~G~nGsGKST 44 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKST 44 (250)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56678999999999998
No 468
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=62.35 E-value=3 Score=38.77 Aligned_cols=17 Identities=29% Similarity=0.550 Sum_probs=15.4
Q ss_pred cCCCeEEEccCCCchhH
Q 010709 157 SGRDLLGCAETGSGKTA 173 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl 173 (503)
.|.-+.|+||+|+|||+
T Consensus 79 ~Ge~vaivG~sGsGKST 95 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKST 95 (306)
T ss_dssp TTCEEEEESSSCHHHHH
T ss_pred CCCEEEEECCCCchHHH
Confidence 56779999999999998
No 469
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=62.18 E-value=4.3 Score=36.76 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=15.1
Q ss_pred cCCCeEEEccCCCchhH
Q 010709 157 SGRDLLGCAETGSGKTA 173 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl 173 (503)
.|.-+.+.||.|+|||+
T Consensus 49 ~Gei~~liG~NGsGKST 65 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKST 65 (263)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEEcCCCCcHHH
Confidence 56678899999999998
No 470
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=62.11 E-value=25 Score=33.57 Aligned_cols=73 Identities=18% Similarity=0.243 Sum_probs=52.7
Q ss_pred CCCcEEEEEcchhhHHHHHHHHHHC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cccc-CCCCCC
Q 010709 373 PFPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-----VASR-GLDVMG 442 (503)
Q Consensus 373 ~~~~~lIF~~~~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~-Gldip~ 442 (503)
...++||.++++..+.++++.+... +..+..++|+.....+ ++.+..+...|+|+|. .+.. .++...
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 3457999999999999998888764 5778888888765443 3445567889999993 2222 356667
Q ss_pred CCEEEE
Q 010709 443 VAHVVN 448 (503)
Q Consensus 443 v~~VI~ 448 (503)
+++||.
T Consensus 184 ~~~vVi 189 (414)
T 3eiq_A 184 IKMFVL 189 (414)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777764
No 471
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=62.10 E-value=4.4 Score=36.34 Aligned_cols=19 Identities=16% Similarity=0.114 Sum_probs=15.5
Q ss_pred cCCCeEEEccCCCchhHHh
Q 010709 157 SGRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~ 175 (503)
.+..+.|.||+|||||+..
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3456899999999999843
No 472
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=62.06 E-value=10 Score=46.61 Aligned_cols=46 Identities=11% Similarity=0.118 Sum_probs=29.7
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHH----hcCCCeEEEccCCCchhHHhH
Q 010709 130 PSIMKDIEFHEYTRPTSIQAQAMPVA----LSGRDLLGCAETGSGKTAAFT 176 (503)
Q Consensus 130 ~~l~~~l~~~~~~~~~~~Q~~~i~~i----~~~~~vii~~~TGsGKTl~~~ 176 (503)
..+.+.+...|+. |.+.+..-+-.+ ...+.++++||||+|||.++-
T Consensus 875 ~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 875 KKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 4555666677774 455444433222 234459999999999999864
No 473
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=61.76 E-value=4.4 Score=36.88 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=15.3
Q ss_pred cCCCeEEEccCCCchhH
Q 010709 157 SGRDLLGCAETGSGKTA 173 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl 173 (503)
.|.-+.|.||.|+|||+
T Consensus 44 ~Ge~~~i~G~nGsGKST 60 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKST 60 (271)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56778999999999998
No 474
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=61.74 E-value=12 Score=36.55 Aligned_cols=68 Identities=12% Similarity=0.011 Sum_probs=45.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHhhCCCcEEEECcHHHHHHHHcCCCCCCCccEE
Q 010709 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFV 273 (503)
Q Consensus 194 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~v 273 (503)
++++||.+|++.-+..+++.+++. ++.+..++|+........-..+..+|+|+| +.+.. .+++. +..|
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT-----~v~e~-GiDip-~~~V 238 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA-----GKKVLYLNRKTFESEYPKCKSEKWDFVITT-----DISEM-GANFK-ADRV 238 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT-----TCCEEEESTTTHHHHTTHHHHSCCSEEEEC-----GGGGT-SCCCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc-----CCeEEEeCCccHHHHHHhhcCCCCeEEEEC-----chHHc-CcccC-CcEE
Confidence 457999999999999988888775 367888887743222222223678999999 34444 34444 4444
No 475
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=61.72 E-value=4.4 Score=36.31 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=15.1
Q ss_pred cCCCeEEEccCCCchhH
Q 010709 157 SGRDLLGCAETGSGKTA 173 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl 173 (503)
.|.-+.+.||.|+|||+
T Consensus 25 ~Ge~~~liG~NGsGKST 41 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKST 41 (249)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 56678899999999998
No 476
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=61.67 E-value=4.4 Score=36.49 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=15.2
Q ss_pred cCCCeEEEccCCCchhH
Q 010709 157 SGRDLLGCAETGSGKTA 173 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl 173 (503)
.|.-+.+.||.|+|||+
T Consensus 40 ~Gei~~l~G~NGsGKST 56 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTT 56 (256)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 56678999999999998
No 477
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=61.65 E-value=13 Score=36.58 Aligned_cols=68 Identities=13% Similarity=0.079 Sum_probs=46.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHh-hCCCcEEEECcHHHHHHHHcCCCCCCCccE
Q 010709 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL-RGGVSIVVATPGRFLDHLQQGNTSLSRVSF 272 (503)
Q Consensus 194 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~ 272 (503)
++++||.+|++.-+..+++.+++. ++.+..+++.... .....+ .+..+|+|+| +.+.. .+++.. ++
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~-----g~~~~~lh~~~~~-~~~~~f~~g~~~vLVaT-----~v~~~-GiDip~-~~ 254 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS-----GKRVIQLSRKTFD-TEYPKTKLTDWDFVVTT-----DISEM-GANFRA-GR 254 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT-----TCCEEEECTTTHH-HHGGGGGSSCCSEEEEC-----GGGGS-SCCCCC-SE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc-----CCeEEECCHHHHH-HHHHhhccCCceEEEEC-----CHHHh-CcCCCC-CE
Confidence 457999999999999888888664 3667777776543 222233 3568999999 34444 455666 66
Q ss_pred EE
Q 010709 273 VI 274 (503)
Q Consensus 273 vV 274 (503)
||
T Consensus 255 VI 256 (451)
T 2jlq_A 255 VI 256 (451)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 478
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=61.62 E-value=3.5 Score=35.86 Aligned_cols=16 Identities=25% Similarity=0.200 Sum_probs=13.8
Q ss_pred CeEEEccCCCchhHHh
Q 010709 160 DLLGCAETGSGKTAAF 175 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~ 175 (503)
.+.+.|+.|||||++.
T Consensus 6 ~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 6 IVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999853
No 479
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=61.45 E-value=4.4 Score=37.02 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=15.2
Q ss_pred cCCCeEEEccCCCchhH
Q 010709 157 SGRDLLGCAETGSGKTA 173 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl 173 (503)
.|.-+.+.||.|+|||+
T Consensus 46 ~Ge~~~liG~NGsGKST 62 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTT 62 (279)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 56678999999999998
No 480
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=61.24 E-value=2.6 Score=37.93 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=14.3
Q ss_pred CCeEEEccCCCchhHHh
Q 010709 159 RDLLGCAETGSGKTAAF 175 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~ 175 (503)
..++++|++|+|||+.+
T Consensus 33 ~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIH 49 (253)
T ss_dssp EEEEEESCGGGTTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34899999999999853
No 481
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=60.64 E-value=3.9 Score=35.01 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=13.7
Q ss_pred CeEEEccCCCchhHHh
Q 010709 160 DLLGCAETGSGKTAAF 175 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~ 175 (503)
.+.++|++|||||++.
T Consensus 14 iIgltG~~GSGKSTva 29 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVC 29 (192)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999854
No 482
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=60.50 E-value=4.7 Score=36.51 Aligned_cols=17 Identities=47% Similarity=0.663 Sum_probs=15.1
Q ss_pred cCCCeEEEccCCCchhH
Q 010709 157 SGRDLLGCAETGSGKTA 173 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl 173 (503)
.|.-+.+.||.|+|||+
T Consensus 32 ~Ge~~~liG~nGsGKST 48 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKST 48 (266)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 56678899999999998
No 483
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=60.30 E-value=4.7 Score=36.21 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=15.1
Q ss_pred cCCCeEEEccCCCchhH
Q 010709 157 SGRDLLGCAETGSGKTA 173 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl 173 (503)
.|.-+.+.||.|+|||+
T Consensus 30 ~Ge~~~l~G~nGsGKST 46 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKST 46 (253)
T ss_dssp TTCEEEEECCSSSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56678899999999998
No 484
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=60.07 E-value=3.5 Score=40.93 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=14.5
Q ss_pred CCeEEEccCCCchhHHh
Q 010709 159 RDLLGCAETGSGKTAAF 175 (503)
Q Consensus 159 ~~vii~~~TGsGKTl~~ 175 (503)
+.+++.||+|+|||+.+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45999999999999843
No 485
>1lsh_B Lipovitellin (LV-2); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: f.7.1.1
Probab=59.97 E-value=2.1 Score=39.85 Aligned_cols=10 Identities=30% Similarity=0.129 Sum_probs=7.1
Q ss_pred CCeEEEccCC
Q 010709 159 RDLLGCAETG 168 (503)
Q Consensus 159 ~~vii~~~TG 168 (503)
.++-+.|.||
T Consensus 127 y~i~i~getg 136 (319)
T 1lsh_B 127 YRAMLEASTG 136 (319)
T ss_dssp EEEEEEEEEE
T ss_pred eEEEEEEEee
Confidence 3477777777
No 486
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=59.86 E-value=11 Score=31.60 Aligned_cols=15 Identities=40% Similarity=0.302 Sum_probs=13.1
Q ss_pred CeEEEccCCCchhHH
Q 010709 160 DLLGCAETGSGKTAA 174 (503)
Q Consensus 160 ~vii~~~TGsGKTl~ 174 (503)
-++++|+.|+|||+.
T Consensus 8 ~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL 22 (174)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 478999999999974
No 487
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=59.26 E-value=8.1 Score=35.58 Aligned_cols=16 Identities=44% Similarity=0.511 Sum_probs=14.1
Q ss_pred CeEEEccCCCchhHHh
Q 010709 160 DLLGCAETGSGKTAAF 175 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~ 175 (503)
++++.||+|+|||..+
T Consensus 40 ~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 40 HLLFSGPPGTGKTATA 55 (319)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred eEEEECcCCcCHHHHH
Confidence 5999999999999754
No 488
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=59.00 E-value=4 Score=37.56 Aligned_cols=16 Identities=31% Similarity=0.277 Sum_probs=13.8
Q ss_pred CeEEEccCCCchhHHh
Q 010709 160 DLLGCAETGSGKTAAF 175 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~ 175 (503)
-++++|++|+|||+.+
T Consensus 4 ~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999854
No 489
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=58.95 E-value=8.9 Score=40.63 Aligned_cols=18 Identities=33% Similarity=0.313 Sum_probs=15.4
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
..++++.||+|+|||+.+
T Consensus 201 ~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 457999999999999854
No 490
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=58.75 E-value=3.3 Score=35.81 Aligned_cols=15 Identities=20% Similarity=0.213 Sum_probs=13.1
Q ss_pred eEEEccCCCchhHHh
Q 010709 161 LLGCAETGSGKTAAF 175 (503)
Q Consensus 161 vii~~~TGsGKTl~~ 175 (503)
+++.|+.|+|||+..
T Consensus 3 I~i~G~~GsGKsTl~ 17 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLV 17 (214)
T ss_dssp EEEEEEEEEEHHHHH
T ss_pred EEEEcCCCCCHHHHH
Confidence 689999999999853
No 491
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=58.67 E-value=5.6 Score=35.42 Aligned_cols=15 Identities=27% Similarity=0.288 Sum_probs=13.2
Q ss_pred CCeEEEccCCCchhH
Q 010709 159 RDLLGCAETGSGKTA 173 (503)
Q Consensus 159 ~~vii~~~TGsGKTl 173 (503)
.-+.+.||.|+|||+
T Consensus 25 e~~~liG~nGsGKST 39 (240)
T 2onk_A 25 DYCVLLGPTGAGKSV 39 (240)
T ss_dssp SEEEEECCTTSSHHH
T ss_pred EEEEEECCCCCCHHH
Confidence 447899999999998
No 492
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=57.61 E-value=7.7 Score=36.14 Aligned_cols=18 Identities=28% Similarity=0.099 Sum_probs=14.9
Q ss_pred CCCeEEEccCCCchhHHh
Q 010709 158 GRDLLGCAETGSGKTAAF 175 (503)
Q Consensus 158 ~~~vii~~~TGsGKTl~~ 175 (503)
|.-++|.|++|+|||..+
T Consensus 98 g~i~~i~G~~gsGKT~la 115 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIM 115 (322)
T ss_dssp TEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345899999999999754
No 493
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=57.31 E-value=6.8 Score=41.20 Aligned_cols=24 Identities=33% Similarity=0.601 Sum_probs=20.0
Q ss_pred HHHHHhcCCC--eEEEccCCCchhHH
Q 010709 151 AMPVALSGRD--LLGCAETGSGKTAA 174 (503)
Q Consensus 151 ~i~~i~~~~~--vii~~~TGsGKTl~ 174 (503)
.+..+++|.| ++..|.||||||..
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~T 479 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFT 479 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhc
Confidence 5677788987 77789999999965
No 494
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=57.13 E-value=8 Score=29.13 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=31.1
Q ss_pred CCCcEEEEEcchhhHHHHHHHHHHCCCe-EEEEcCCCC
Q 010709 373 PFPLTIVFVERKTRCDEVSEALVAEGLH-AVALHGGRN 409 (503)
Q Consensus 373 ~~~~~lIF~~~~~~~~~l~~~L~~~~~~-v~~lh~~~~ 409 (503)
+..+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 3456999999988899999999999995 888888864
No 495
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=57.11 E-value=2.7 Score=44.08 Aligned_cols=71 Identities=13% Similarity=0.192 Sum_probs=47.9
Q ss_pred CCcEEEEEcchhhHHHH-HHHHHHCC---CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-cccc-----------C
Q 010709 374 FPLTIVFVERKTRCDEV-SEALVAEG---LHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VASR-----------G 437 (503)
Q Consensus 374 ~~~~lIF~~~~~~~~~l-~~~L~~~~---~~v~~lh~~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~~-----------G 437 (503)
.+++||.++++.-+.+. ++.|.+.. +.+..++|+....++...+. +..+|+|+|. .+.. .
T Consensus 56 ~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~ 131 (699)
T 4gl2_A 56 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAG 131 (699)
T ss_dssp CCCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------C
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccc
Confidence 35799999999999888 88887653 89999999987554433332 4689999993 3322 3
Q ss_pred CCCCCCCEEEE
Q 010709 438 LDVMGVAHVVN 448 (503)
Q Consensus 438 ldip~v~~VI~ 448 (503)
+.+..+++||.
T Consensus 132 ~~~~~~~lvVi 142 (699)
T 4gl2_A 132 VQLSDFSLIII 142 (699)
T ss_dssp CCGGGCSEEEE
T ss_pred eecccCcEEEE
Confidence 46677888774
No 496
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=57.09 E-value=22 Score=36.54 Aligned_cols=68 Identities=12% Similarity=0.056 Sum_probs=46.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhccCCCceEEEEECCccHHHHHHHh-hCCCcEEEECcHHHHHHHHcCCCCCCCccE
Q 010709 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL-RGGVSIVVATPGRFLDHLQQGNTSLSRVSF 272 (503)
Q Consensus 194 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ilv~Tp~~l~~~l~~~~~~l~~~~~ 272 (503)
+.++||.++++.-+..+++.+++. ++.+..+++.... .....+ .+..+|+|+|. .+.. .+++. +++
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~~R~-~~l~~F~~g~~~VLVaTd-----v~~r-GiDi~-v~~ 421 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS-----GKRVIQLSRKTFD-TEYPKTKLTDWDFVVTTD-----ISEM-GANFR-AGR 421 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTTHH-HHTTHHHHSCCSEEEECG-----GGGT-TCCCC-CSE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc-----CCcEEEEChHHHH-HHHHhhcCCCcEEEEECc-----HHHc-CcccC-ceE
Confidence 467999999999999998888875 3667778775332 222222 35689999993 4444 44554 776
Q ss_pred EE
Q 010709 273 VI 274 (503)
Q Consensus 273 vV 274 (503)
||
T Consensus 422 VI 423 (618)
T 2whx_A 422 VI 423 (618)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 497
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=56.88 E-value=6.7 Score=30.62 Aligned_cols=37 Identities=19% Similarity=0.211 Sum_probs=31.3
Q ss_pred CCCcEEEEEcchhh--HHHHHHHHHHCCCeEEEEcCCCC
Q 010709 373 PFPLTIVFVERKTR--CDEVSEALVAEGLHAVALHGGRN 409 (503)
Q Consensus 373 ~~~~~lIF~~~~~~--~~~l~~~L~~~~~~v~~lh~~~~ 409 (503)
+..+++|||.+-.. +...+..|...|+++..+.||+.
T Consensus 70 ~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 70 PAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp TTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 45579999998776 78999999999999888888864
No 498
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=56.79 E-value=6.5 Score=34.63 Aligned_cols=26 Identities=27% Similarity=0.220 Sum_probs=18.5
Q ss_pred cCCCeEEEccCCCchhHHhHHHHHHHHH
Q 010709 157 SGRDLLGCAETGSGKTAAFTIPMIQHCV 184 (503)
Q Consensus 157 ~~~~vii~~~TGsGKTl~~~lp~l~~~~ 184 (503)
.|.-+++.|+.|+|||+. +..+...+
T Consensus 25 ~g~~i~i~G~~GsGKsT~--~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTV--INEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHH--HHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHH--HHHHHHHH
Confidence 455689999999999985 33444433
No 499
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=56.51 E-value=4.8 Score=36.00 Aligned_cols=16 Identities=25% Similarity=0.165 Sum_probs=13.8
Q ss_pred CeEEEccCCCchhHHh
Q 010709 160 DLLGCAETGSGKTAAF 175 (503)
Q Consensus 160 ~vii~~~TGsGKTl~~ 175 (503)
.+.|.|+.|||||+..
T Consensus 24 iI~I~G~~GSGKST~a 39 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVC 39 (252)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3889999999999854
No 500
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=56.47 E-value=9.4 Score=30.74 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=31.5
Q ss_pred CCCcEEEEEcch--hhHHHHHHHHHHCCCeEEEEcCCCC
Q 010709 373 PFPLTIVFVERK--TRCDEVSEALVAEGLHAVALHGGRN 409 (503)
Q Consensus 373 ~~~~~lIF~~~~--~~~~~l~~~L~~~~~~v~~lh~~~~ 409 (503)
+..+++|||.+- ..+...+..|+..|+++..+.||+.
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 345699999987 5788999999999999999999874
Done!