BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010710
(503 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CWB|B Chain B, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|O Chain O, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|B Chain B, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|O Chain O, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|O Chain O, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|B Chain B, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|O Chain O, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|B Chain B, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|O Chain O, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|B Chain B, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|O Chain O, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|B Chain B, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|O Chain O, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|B Chain B, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|O Chain O, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|B Chain B, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|O Chain O, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|B Chain B, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|O Chain O, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|B Chain B, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|O Chain O, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|B Chain B, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|O Chain O, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|B Chain B, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|O Chain O, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 441
Score = 179 bits (455), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 123/415 (29%), Positives = 206/415 (49%), Gaps = 9/415 (2%)
Query: 73 PG--KVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTK 130
PG +++T L NG+ IAS + SPA+ IG+++ GS YET ++ G ++LL + +TK
Sbjct: 21 PGAEDLEITKLPNGLIIASLENFSPASRIGVFIKAGSRYETTANLGTAHLLRLASPLTTK 80
Query: 131 NRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVN 190
S RI R +EA+GGS+ ++RE+M Y + L+ +V ++E L++ P F WEV
Sbjct: 81 GASSFRITRGIEAVGGSLSVYSTREKMTYCVECLRDHVDTVMEYLLNVTTAPEFRPWEVT 140
Query: 191 EELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDGTILEEIVAEN 250
+ +LK + +PQ +LE +H+ Y AL NPL P+ + ++ L V N
Sbjct: 141 DLQPQLKVDKAVAFQSPQVGVLENLHAAAYKTALANPLYCPDYRIGKITSEQLHHFVQNN 200
Query: 251 FTAPRMVLAASGVDLDELLPIAEXXXXXXXXXXXXTEPKSVYIGGDYRQQADSPETHIAL 310
FT+ RM L GV +L +AE + K+ Y GG+ R+Q H A+
Sbjct: 201 FTSARMALVGIGVKHSDLKQVAE-QFLNIRSGAGTSSAKATYWGGEIREQNGHSLVHAAV 259
Query: 311 AFEVPGGWLKDKEAIILTVLQVLMXXXXXXXXXXXXXXMHTRLYLRVLNEYQQIQSFSAF 370
E G + EA +VLQ ++ + ++LY V Q SAF
Sbjct: 260 VTE--GAAVGSAEANAFSVLQHVL---GAGPLIKRGSSVTSKLYQGVAKATTQPFDASAF 314
Query: 371 NSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMN 430
N ++++GLFG Y + + + + + +L A VT+ + +AK K+ LM+
Sbjct: 315 NVNYSDSGLFGFYTISQAAHAGEVIRAAMNQL-KAAAQGGVTEEDVTKAKNQLKATYLMS 373
Query: 431 LESRVIVSEDIGRQILTYGERKSVDQFLSVLEHITLDDITNIAQKIISSPLTMAS 485
+E+ + +IG + L G + ++ +T D+ N A+K +S +MA+
Sbjct: 374 VETAQGLLNEIGSEALLSGTHTAPSVVAQKIDSVTSADVVNAAKKFVSGKKSMAA 428
>pdb|1BCC|A Chain A, Cytochrome Bc1 Complex From Chicken
pdb|3BCC|A Chain A, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|A Chain A, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 446
Score = 175 bits (444), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 120/410 (29%), Positives = 202/410 (49%), Gaps = 14/410 (3%)
Query: 75 KVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSH 134
+ +V+ L+NG+R+ASE S P ++G+++D GS YE+ + GA LE +AFK TKNR
Sbjct: 13 ETQVSQLDNGVRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFLEHLAFKGTKNRPQ 72
Query: 135 LRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELR 194
+ +EVE++G + A +SRE Y AL VP+ VELL D V+N D ++ +E
Sbjct: 73 NALEKEVESMGAHLNAYSSREHTAYYIKALSKDVPKAVELLADIVQNCSLEDSQIEKERD 132
Query: 195 KLKSELGELHNNPQGLLLEAIHSTGYAG-ALGNPLLAPESALNRLDGTILEEIVAENFTA 253
+ EL E + + ++ +H+T + G L + P + +L L E ++ ++TA
Sbjct: 133 VIVRELQENDTSMREVVFNYLHATAFQGTGLAQSVEGPSENIRKLSRADLTEYLSTHYTA 192
Query: 254 PRMVLAAS-GVDLDELLPIAEXXX----XXXXXXXXXTEPKSVYIGGDYRQQADS-PETH 307
PRMVLAA+ GV+ +LL +A+ T K + G R + D P H
Sbjct: 193 PRMVLAAAGGVEHQQLLELAQKHFGGVPFTYDDDAVPTLSKCRFTGSQIRHREDGLPLAH 252
Query: 308 IALAFEVPGGWLKDKEAIILTVLQVLMXXXXXXXXXXXXXXMHTRLYLRVLNEYQQIQSF 367
+A+A E PG D L LQV + + + QSF
Sbjct: 253 VAIAVEGPGWAHPD-----LVALQVANAIIGHYDRTYGGGLHSSSPLASIAVTNKLCQSF 307
Query: 368 SAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAV 427
F+ ++ TGLFG Y + + ++ + + + T +++ ++ R K ++A+
Sbjct: 308 QTFSICYSETGLFGFYFVCDRMSIDDMMFVLQGQWMRLCT--SISESEVLRGKNFLRNAL 365
Query: 428 LMNLESRVIVSEDIGRQILTYGERKSVDQFLSVLEHITLDDITNIAQKII 477
+ +L+ V EDIGR++LTYG R ++++ L + + + K I
Sbjct: 366 VSHLDGTTPVCEDIGRELLTYGRRIPLEEWEERLAEVDARMVREVCSKYI 415
>pdb|1HR6|A Chain A, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|C Chain C, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|E Chain E, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|G Chain G, Yeast Mitochondrial Processing Peptidase
pdb|1HR7|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR8|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
Length = 475
Score = 174 bits (440), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 115/418 (27%), Positives = 222/418 (53%), Gaps = 12/418 (2%)
Query: 77 KVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLR 136
K+++L NG+++A+ + +++GLY+D GS +E + G +++L+++AFKST++
Sbjct: 7 KLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRA 66
Query: 137 IVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKL 196
+ +E +GG+ ++SRE + Y V +M++L+ + VR P + E+ E+
Sbjct: 67 MAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSA 126
Query: 197 KSELGELHNNPQGLLLEAIHSTGYAG-ALGNPLLAPESALNRLDGTILEEIVAENFTAPR 255
+ E+ E+ P+ +L E +H+ Y+G LG+PL+ P + + L + + +T
Sbjct: 127 EYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPRGLIPSISKYYLLDYRNKFYTPEN 186
Query: 256 MVLAASGVDLDELLPI-AEXXXXXXXXXXXXTEPKSVYIGGDYRQQ-----ADSPET-HI 308
V A GV ++ L + + T+ + Y GG+ + PE HI
Sbjct: 187 TVAAFVGVPHEKALELTGKYLGDWQSTHPPITKKVAQYTGGESCIPPAPVFGNLPELFHI 246
Query: 309 ALAFEVPGGWLKDKEAIILTVLQVLMXXXXXXXXXXXXXXMHTRLYLRVLNEYQQIQSFS 368
+ FE G + + L LQ L+ M++RLY VLN+Y +++
Sbjct: 247 QIGFE--GLPIDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCV 304
Query: 369 AFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPK--QVTQVQLNRAKEATKSA 426
AFN ++++G+FGI +AV+++ +++ K ++T+ +++RAK KS+
Sbjct: 305 AFNHSYSDSGIFGISLSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSS 364
Query: 427 VLMNLESRVIVSEDIGRQILTYGERKSVDQFLSVLEHITLDDITNIAQKIISSPLTMA 484
+LMNLES+++ ED+GRQ+L +G + V++ +S +E + DDI+ +A+ I + + A
Sbjct: 365 LLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKIEDLKPDDISRVAEMIFTGNVNNA 422
>pdb|3CWB|A Chain A, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|N Chain N, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|A Chain A, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|N Chain N, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|A Chain A, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|N Chain N, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|A Chain A, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|N Chain N, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|A Chain A, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|N Chain N, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|A Chain A, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|N Chain N, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|A Chain A, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|N Chain N, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|A Chain A, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|N Chain N, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|A Chain A, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|N Chain N, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|A Chain A, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|N Chain N, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|A Chain A, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|N Chain N, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|A Chain A, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|N Chain N, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|A Chain A, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|N Chain N, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 446
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 118/410 (28%), Positives = 199/410 (48%), Gaps = 14/410 (3%)
Query: 75 KVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSH 134
+ VTTL+NG+R+ASE S P ++G+++ GS YE + GA +E +AFK TK R
Sbjct: 13 ETNVTTLDNGLRVASEESSQPTCTVGVWIGAGSRYENEKNNGAGYFVEHLAFKGTKKRPC 72
Query: 135 LRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELR 194
+EVE++G SREQ + AL +P++VELL D V+N + ++ +E
Sbjct: 73 AAFEKEVESMGAHFNGYTSREQTAFYIKALSKDMPKVVELLADVVQNCALEESQIEKERG 132
Query: 195 KLKSELGELHNNPQGLLLEAIHSTGYAG-ALGNPLLAPESALNRLDGTILEEIVAENFTA 253
+ EL E+ N+ + + +H+T + G AL + + L L + +F A
Sbjct: 133 VILQELKEMDNDMTNVTFDYLHATAFQGTALARTVEGTTENIKHLTRADLASYIDTHFKA 192
Query: 254 PRMVLAAS-GVDLDELLPIAEXXXXXXXXXXXXTE----PKSVYIGGDYRQQADS-PETH 307
PRMVLAA+ G+ EL+ A P+ + G + R + D+ P H
Sbjct: 193 PRMVLAAAGGISHKELVDAARQHFSGVSFTYKEDAVPILPRCRFTGSEIRARDDALPVAH 252
Query: 308 IALAFEVPGGWLKDKEAIILTVLQVLMXXXXXXXXXXXXXXMHTRLYLRVLNEYQQIQSF 367
+ALA E P GW D + ++L V ++ + +RL + E++ SF
Sbjct: 253 VALAVEGP-GW-ADPDNVVLHVANAII--GRYDRTFGGGKHLSSRLAALAV-EHKLCHSF 307
Query: 368 SAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAV 427
FN+ +++TGLFG + + + E + + T T+ ++ RAK +SA+
Sbjct: 308 QTFNTSYSDTGLFGFHFVADPLSIDDMMFCAQGEWMRLCT--STTESEVKRAKNHLRSAM 365
Query: 428 LMNLESRVIVSEDIGRQILTYGERKSVDQFLSVLEHITLDDITNIAQKII 477
+ L+ V E IG +L YG R S++++ S + + + ++ K I
Sbjct: 366 VAQLDGTTPVCETIGSHLLNYGRRISLEEWDSRISAVDARMVRDVCSKYI 415
>pdb|3BCC|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|B Chain B, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 422
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 116/414 (28%), Positives = 196/414 (47%), Gaps = 7/414 (1%)
Query: 72 EPGKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKN 131
P +++T L NG+ IAS + SP ++IG+++ GS YE S+ G S+LL + +TK
Sbjct: 3 HPQDLEITKLPNGLVIASLENYSPGSTIGVFIKAGSRYENSSNLGTSHLLRLASSLTTKG 62
Query: 132 RSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNE 191
S +I R +EA+GG + ++RE M Y+ + L+ V ++E L++ P F WEV +
Sbjct: 63 ASSFKITRGIEAVGGKLSVESTRENMAYTVECLRDDVEILMEFLLNVTTAPEFRPWEVAD 122
Query: 192 ELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDGTILEEIVAENF 251
+LK + NPQ ++E +H+ Y AL + L P+ + ++ L + V +F
Sbjct: 123 LQPQLKIDKAVAFQNPQTHVIENLHAAAYRNALADSLYCPDYRIGKVTSVELHDFVQNHF 182
Query: 252 TAPRMVLAASGVDLDELLPIAEXXXXXXXXXXXXTEPKSVYIGGDYRQQADSPETHIALA 311
T+ RM L GV L +AE + K+ Y GG+ R+Q H A+
Sbjct: 183 TSARMALVGLGVSHPVLKNVAE-QLLNIRGGLGLSGAKAKYRGGEIREQNGDSLVHAAIV 241
Query: 312 FEVPGGWLKDKEAIILTVLQVLMXXXXXXXXXXXXXXMHTRLYLRVLNEYQQIQSFSAFN 371
E + EA +VLQ ++ + LY V Q SAFN
Sbjct: 242 AE--SAAIGGAEANAFSVLQHVLGANPHVKRGLNAT---SSLYQAVAKGVHQPFDVSAFN 296
Query: 372 SIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNL 431
+ ++++GLFG Y + + + + + ++ IA V+ + AK K+ LM++
Sbjct: 297 ASYSDSGLFGFYTISQAAYAGQVIKAAYNQVKTIAQ-GNVSNENVQAAKNKLKAKYLMSV 355
Query: 432 ESRVIVSEDIGRQILTYGERKSVDQFLSVLEHITLDDITNIAQKIISSPLTMAS 485
ES E++G Q L G L ++ + D+ A+K +S +MA+
Sbjct: 356 ESSEGFLEEVGSQALAAGSYNPPSTVLQQIDAVADADVIKAAKKFVSRQKSMAA 409
>pdb|1BCC|B Chain B, Cytochrome Bc1 Complex From Chicken
Length = 422
Score = 164 bits (416), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 115/414 (27%), Positives = 195/414 (47%), Gaps = 7/414 (1%)
Query: 72 EPGKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKN 131
P +++T L NG+ IAS + SP ++IG+++ GS YE S+ G S+LL + +TK
Sbjct: 3 HPQDLEITKLPNGLVIASLENYSPGSTIGVFIKAGSRYENSSNLGTSHLLRLASSLTTKG 62
Query: 132 RSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNE 191
S +I R +EA+GG + ++RE M Y+ + L+ V ++E L++ P F WEV +
Sbjct: 63 ASSFKITRGIEAVGGKLSVESTRENMAYTVECLRDDVEILMEFLLNVTTAPEFRPWEVAD 122
Query: 192 ELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDGTILEEIVAENF 251
+LK + NPQ ++E +H+ Y AL + L P+ + ++ L + V +F
Sbjct: 123 LQPQLKIDKAVAFQNPQTHVIENLHAAAYRNALADSLYCPDYRIGKVTSVELHDFVQNHF 182
Query: 252 TAPRMVLAASGVDLDELLPIAEXXXXXXXXXXXXTEPKSVYIGGDYRQQADSPETHIALA 311
T+ RM L GV L +AE + K+ Y GG+ R+Q H A+
Sbjct: 183 TSARMALVGLGVSHPVLKNVAE-QLLNIRGGLGLSGAKAKYRGGEIREQNGDSLVHAAIV 241
Query: 312 FEVPGGWLKDKEAIILTVLQVLMXXXXXXXXXXXXXXMHTRLYLRVLNEYQQIQSFSAFN 371
E + EA +VLQ ++ + LY V SAFN
Sbjct: 242 AE--SAAIGGAEANAFSVLQHVLGANPHVKRGLNAT---SSLYQAVAKGVHNPFDVSAFN 296
Query: 372 SIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNL 431
+ ++++GLFG Y + + + + + ++ IA V+ + AK K+ LM++
Sbjct: 297 ASYSDSGLFGFYTISQAAYAGQVIKAAYNQVKTIAQ-GNVSNENVQAAKNKLKAKYLMSV 355
Query: 432 ESRVIVSEDIGRQILTYGERKSVDQFLSVLEHITLDDITNIAQKIISSPLTMAS 485
ES E++G Q L G L ++ + D+ A+K +S +MA+
Sbjct: 356 ESSEGFLEEVGSQALAAGSYNPPSTVLQQIDAVADADVIKAAKKFVSRQKSMAA 409
>pdb|1QCR|B Chain B, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 423
Score = 162 bits (411), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 116/414 (28%), Positives = 194/414 (46%), Gaps = 7/414 (1%)
Query: 72 EPGKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKN 131
P ++ T L NG+ IAS + +PA+ IGL++ GS YE ++ G S+LL + +TK
Sbjct: 4 HPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKG 63
Query: 132 RSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNE 191
S +I R +EA+GG + +++RE M Y+ + L+ V ++E L++ P F WEV
Sbjct: 64 ASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAA 123
Query: 192 ELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDGTILEEIVAENF 251
+L+ + NPQ ++E +H+ Y AL N L P+ + ++ L + V +F
Sbjct: 124 LQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYCPDYRIGKVTPVELHDYVQNHF 183
Query: 252 TAPRMVLAASGVDLDELLPIAEXXXXXXXXXXXXTEPKSVYIGGDYRQQADSPETHIALA 311
T+ RM L GV L +AE + K+ Y GG+ R+Q H AL
Sbjct: 184 TSARMALIGLGVSHPVLKQVAE-QFLNIRGGLGLSGAKAKYHGGEIREQNGDSLVHAALV 242
Query: 312 FEVPGGWLKDKEAIILTVLQVLMXXXXXXXXXXXXXXMHTRLYLRVLNEYQQIQSFSAFN 371
E + EA +VLQ ++ + LY V Q SAFN
Sbjct: 243 AE--SAAIGSAEANAFSVLQHVLGAGPHVKRGSNAT---SSLYQAVAKGVHQPFDVSAFN 297
Query: 372 SIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNL 431
+ ++++GLFG Y + + + ++ IA ++ + AK K+ LM++
Sbjct: 298 ASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQ-GNLSNPDVQAAKNKLKAGYLMSV 356
Query: 432 ESRVIVSEDIGRQILTYGERKSVDQFLSVLEHITLDDITNIAQKIISSPLTMAS 485
ES +++G Q L G L ++ + D+ N A+K +S +MA+
Sbjct: 357 ESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVADADVINAAKKFVSGRKSMAA 410
>pdb|1BGY|B Chain B, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|N Chain N, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|B Chain B, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|B Chain B, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|B Chain B, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|2A06|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQQ|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|B Chain B, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|B Chain B, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|BB Chain b, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 439
Score = 162 bits (410), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 118/422 (27%), Positives = 197/422 (46%), Gaps = 9/422 (2%)
Query: 64 PPSLPDFVEPGKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEK 123
P +P P ++ T L NG+ IAS + +PA+ IGL++ GS YE ++ G S+LL
Sbjct: 14 PAGVPP--HPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRL 71
Query: 124 MAFKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPV 183
+ +TK S +I R +EA+GG + +++RE M Y+ + L+ V ++E L++ P
Sbjct: 72 ASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPE 131
Query: 184 FLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDGTIL 243
F WEV +L+ + NPQ ++E +H+ Y AL N L P+ + ++ L
Sbjct: 132 FRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYCPDYRIGKVTPVEL 191
Query: 244 EEIVAENFTAPRMVLAASGVDLDELLPIAEXXXXXXXXXXXXTEPKSVYIGGDYRQQADS 303
+ V +FT+ RM L GV L +AE + K+ Y GG+ R+Q
Sbjct: 192 HDYVQNHFTSARMALIGLGVSHPVLKQVAE-QFLNIRGGLGLSGAKAKYHGGEIREQNGD 250
Query: 304 PETHIALAFEVPGGWLKDKEAIILTVLQVLMXXXXXXXXXXXXXXMHTRLYLRVLNEYQQ 363
H AL E + EA +VLQ ++ + LY V Q
Sbjct: 251 SLVHAALVAE--SAAIGSAEANAFSVLQHVLGAGPHVKRGSNAT---SSLYQAVAKGVHQ 305
Query: 364 IQSFSAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEAT 423
SAFN+ ++++GLFG Y + + + ++ IA ++ + AK
Sbjct: 306 PFDVSAFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQ-GNLSNPDVQAAKNKL 364
Query: 424 KSAVLMNLESRVIVSEDIGRQILTYGERKSVDQFLSVLEHITLDDITNIAQKIISSPLTM 483
K+ LM++ES +++G Q L G L ++ + D+ N A+K +S +M
Sbjct: 365 KAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVADADVINAAKKFVSGRKSM 424
Query: 484 AS 485
A+
Sbjct: 425 AA 426
>pdb|1SQB|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|1SQP|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
Length = 453
Score = 162 bits (410), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 118/422 (27%), Positives = 197/422 (46%), Gaps = 9/422 (2%)
Query: 64 PPSLPDFVEPGKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEK 123
P +P P ++ T L NG+ IAS + +PA+ IGL++ GS YE ++ G S+LL
Sbjct: 28 PAGVPP--HPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRL 85
Query: 124 MAFKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPV 183
+ +TK S +I R +EA+GG + +++RE M Y+ + L+ V ++E L++ P
Sbjct: 86 ASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPE 145
Query: 184 FLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDGTIL 243
F WEV +L+ + NPQ ++E +H+ Y AL N L P+ + ++ L
Sbjct: 146 FRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYCPDYRIGKVTPVEL 205
Query: 244 EEIVAENFTAPRMVLAASGVDLDELLPIAEXXXXXXXXXXXXTEPKSVYIGGDYRQQADS 303
+ V +FT+ RM L GV L +AE + K+ Y GG+ R+Q
Sbjct: 206 HDYVQNHFTSARMALIGLGVSHPVLKQVAE-QFLNIRGGLGLSGAKAKYHGGEIREQNGD 264
Query: 304 PETHIALAFEVPGGWLKDKEAIILTVLQVLMXXXXXXXXXXXXXXMHTRLYLRVLNEYQQ 363
H AL E + EA +VLQ ++ + LY V Q
Sbjct: 265 SLVHAALVAE--SAAIGSAEANAFSVLQHVLGAGPHVKRGSNAT---SSLYQAVAKGVHQ 319
Query: 364 IQSFSAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEAT 423
SAFN+ ++++GLFG Y + + + ++ IA ++ + AK
Sbjct: 320 PFDVSAFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQ-GNLSNPDVQAAKNKL 378
Query: 424 KSAVLMNLESRVIVSEDIGRQILTYGERKSVDQFLSVLEHITLDDITNIAQKIISSPLTM 483
K+ LM++ES +++G Q L G L ++ + D+ N A+K +S +M
Sbjct: 379 KAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVADADVINAAKKFVSGRKSM 438
Query: 484 AS 485
A+
Sbjct: 439 AA 440
>pdb|1SQB|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|1SQP|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
Length = 480
Score = 155 bits (392), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 112/408 (27%), Positives = 195/408 (47%), Gaps = 14/408 (3%)
Query: 75 KVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSH 134
+ +V+ L+NG+R+ASE S P ++G+++D GS YE+ + GA +E +AFK TKNR
Sbjct: 47 ETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPG 106
Query: 135 LRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELR 194
+ +EVE++G + A ++RE Y AL +P+ VELL D V+N D ++ +E
Sbjct: 107 NALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERD 166
Query: 195 KLKSELGELHNNPQGLLLEAIHSTGYAGA-LGNPLLAPESALNRLDGTILEEIVAENFTA 253
+ EL E + + ++ +H+T + G L + P + +L L E ++ ++ A
Sbjct: 167 VILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEYLSRHYKA 226
Query: 254 PRMVLAAS-GVDLDELLPIAEXX----XXXXXXXXXXTEPKSVYIGGDYRQQADS-PETH 307
PRMVLAA+ G++ +LL +A+ T + G + D P H
Sbjct: 227 PRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSPCRFTGSQICHREDGLPLAH 286
Query: 308 IALAFEVPGGWLKDKEAIILTVLQVLMXXXXXXXXXXXXXXMHTRLYLRVLNEYQQIQSF 367
+A+A E PG D A LQV + + + QSF
Sbjct: 287 VAIAVEGPGWAHPDNVA-----LQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQSF 341
Query: 368 SAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAV 427
FN + +TGL G + + + ++ + + + T T+ ++ R K ++A+
Sbjct: 342 QTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCT--SATESEVLRGKNLLRNAL 399
Query: 428 LMNLESRVIVSEDIGRQILTYGERKSVDQFLSVLEHITLDDITNIAQK 475
+ +L+ V EDIGR +LTYG R + ++ S + + + + K
Sbjct: 400 VSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDARVVREVCSK 447
>pdb|1QCR|A Chain A, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 446
Score = 155 bits (391), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 112/408 (27%), Positives = 195/408 (47%), Gaps = 14/408 (3%)
Query: 75 KVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSH 134
+ +V+ L+NG+R+ASE S P ++G+++D GS YE+ + GA +E +AFK TKNR
Sbjct: 13 ETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPG 72
Query: 135 LRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELR 194
+ +EVE++G + A ++RE Y AL +P+ VELL D V+N D ++ +E
Sbjct: 73 NALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERD 132
Query: 195 KLKSELGELHNNPQGLLLEAIHSTGYAGA-LGNPLLAPESALNRLDGTILEEIVAENFTA 253
+ EL E + + ++ +H+T + G L + P + +L L E ++ ++ A
Sbjct: 133 VILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEYLSRHYKA 192
Query: 254 PRMVLAAS-GVDLDELLPIAEXX----XXXXXXXXXXTEPKSVYIGGDYRQQADS-PETH 307
PRMVLAA+ G++ +LL +A+ T + G + D P H
Sbjct: 193 PRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSPCRFTGSQICHREDGLPLAH 252
Query: 308 IALAFEVPGGWLKDKEAIILTVLQVLMXXXXXXXXXXXXXXMHTRLYLRVLNEYQQIQSF 367
+A+A E PG D A LQV + + + QSF
Sbjct: 253 VAIAVEGPGWAHPDNVA-----LQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQSF 307
Query: 368 SAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAV 427
FN + +TGL G + + + ++ + + + T T+ ++ R K ++A+
Sbjct: 308 QTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCT--SATESEVLRGKNLLRNAL 365
Query: 428 LMNLESRVIVSEDIGRQILTYGERKSVDQFLSVLEHITLDDITNIAQK 475
+ +L+ V EDIGR +LTYG R + ++ S + + + + K
Sbjct: 366 VSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDARVVREVCSK 413
>pdb|1BGY|A Chain A, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|M Chain M, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|A Chain A, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|A Chain A, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|A Chain A, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|2A06|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQQ|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|A Chain A, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|A Chain A, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|AA Chain a, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 446
Score = 155 bits (391), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 112/408 (27%), Positives = 195/408 (47%), Gaps = 14/408 (3%)
Query: 75 KVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSH 134
+ +V+ L+NG+R+ASE S P ++G+++D GS YE+ + GA +E +AFK TKNR
Sbjct: 13 ETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPG 72
Query: 135 LRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELR 194
+ +EVE++G + A ++RE Y AL +P+ VELL D V+N D ++ +E
Sbjct: 73 NALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERD 132
Query: 195 KLKSELGELHNNPQGLLLEAIHSTGYAGA-LGNPLLAPESALNRLDGTILEEIVAENFTA 253
+ EL E + + ++ +H+T + G L + P + +L L E ++ ++ A
Sbjct: 133 VILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEYLSRHYKA 192
Query: 254 PRMVLAAS-GVDLDELLPIAEXX----XXXXXXXXXXTEPKSVYIGGDYRQQADS-PETH 307
PRMVLAA+ G++ +LL +A+ T + G + D P H
Sbjct: 193 PRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSPCRFTGSQICHREDGLPLAH 252
Query: 308 IALAFEVPGGWLKDKEAIILTVLQVLMXXXXXXXXXXXXXXMHTRLYLRVLNEYQQIQSF 367
+A+A E PG D A LQV + + + QSF
Sbjct: 253 VAIAVEGPGWAHPDNVA-----LQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQSF 307
Query: 368 SAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAV 427
FN + +TGL G + + + ++ + + + T T+ ++ R K ++A+
Sbjct: 308 QTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCT--SATESEVLRGKNLLRNAL 365
Query: 428 LMNLESRVIVSEDIGRQILTYGERKSVDQFLSVLEHITLDDITNIAQK 475
+ +L+ V EDIGR +LTYG R + ++ S + + + + K
Sbjct: 366 VSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDARVVREVCSK 413
>pdb|1HR6|B Chain B, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|D Chain D, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|F Chain F, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|H Chain H, Yeast Mitochondrial Processing Peptidase
Length = 443
Score = 136 bits (342), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 113/426 (26%), Positives = 209/426 (49%), Gaps = 19/426 (4%)
Query: 73 PGKVKVTTLENGIRIASE-TSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKN 131
PG + + L NG+ IA+E + +A++G+++D GS E + G ++ LE +AFK T+N
Sbjct: 5 PG-TRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQN 63
Query: 132 RSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNE 191
R I E+E IG + A SRE Y +L+ +P+ V++L D + V + +
Sbjct: 64 RPQQGIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIER 123
Query: 192 ELRKLKSELGELHNNPQGLLLEAIHSTGYAGA-LGNPLLAPESALNRLDGTILEEIVAEN 250
E + E E+ ++ + +H Y LG +L P + + T L++ + +N
Sbjct: 124 ERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILGPIKNIKSITRTDLKDYITKN 183
Query: 251 FTAPRMVLAASG-VDLDELLPIAEXXXXXXXXXXXXTE------PKSVYIGGD-YRQQAD 302
+ RMVLA +G VD ++L+ A+ P V+ G+ + ++
Sbjct: 184 YKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVPLGSPRGPLPVFCRGERFIKENT 243
Query: 303 SPETHIALAFEVPGGWLKDKEAIILTVLQVLMXXXXXXXXXXXXXXMHTRLYLRVLNEYQ 362
P THIA+A E G + + Q ++ + L +
Sbjct: 244 LPTTHIAIALE--GVSWSAPDYFVALATQAIVGNWDRAIGTGTNSP--SPLAVAASQNGS 299
Query: 363 QIQSFSAFNSIFNNTGLFGIYACTGSD--FVSKAVDLVVRELILIATPKQVTQVQLNRAK 420
S+ +F++ + ++GL+G+Y T S+ V V+ +++E I + K ++ ++NRAK
Sbjct: 300 LANSYMSFSTSYADSGLWGMYIVTDSNEHNVRLIVNEILKEWKRIKSGK-ISDAEVNRAK 358
Query: 421 EATKSAVLMNLESRVIVSEDIGRQILTYGERKSVDQFLSVLEHITLDDITNIAQ-KIISS 479
K+A+L++L+ + EDIGRQ++T G+R S ++ ++ IT DDI A ++ +
Sbjct: 359 AQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLSPEEVFEQVDKITKDDIIMWANYRLQNK 418
Query: 480 PLTMAS 485
P++M +
Sbjct: 419 PVSMVA 424
>pdb|1HR7|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR8|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
Length = 443
Score = 135 bits (339), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 112/426 (26%), Positives = 209/426 (49%), Gaps = 19/426 (4%)
Query: 73 PGKVKVTTLENGIRIASE-TSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKN 131
PG + + L NG+ IA+E + +A++G+++D GS E + G ++ L+ +AFK T+N
Sbjct: 5 PG-TRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLQHLAFKGTQN 63
Query: 132 RSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNE 191
R I E+E IG + A SRE Y +L+ +P+ V++L D + V + +
Sbjct: 64 RPQQGIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIER 123
Query: 192 ELRKLKSELGELHNNPQGLLLEAIHSTGYAGA-LGNPLLAPESALNRLDGTILEEIVAEN 250
E + E E+ ++ + +H Y LG +L P + + T L++ + +N
Sbjct: 124 ERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILGPIKNIKSITRTDLKDYITKN 183
Query: 251 FTAPRMVLAASG-VDLDELLPIAEXXXXXXXXXXXXTE------PKSVYIGGD-YRQQAD 302
+ RMVLA +G VD ++L+ A+ P V+ G+ + ++
Sbjct: 184 YKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVPLGSPRGPLPVFCRGERFIKENT 243
Query: 303 SPETHIALAFEVPGGWLKDKEAIILTVLQVLMXXXXXXXXXXXXXXMHTRLYLRVLNEYQ 362
P THIA+A E G + + Q ++ + L +
Sbjct: 244 LPTTHIAIALE--GVSWSAPDYFVALATQAIVGNWDRAIGTGTNSP--SPLAVAASQNGS 299
Query: 363 QIQSFSAFNSIFNNTGLFGIYACTGSD--FVSKAVDLVVRELILIATPKQVTQVQLNRAK 420
S+ +F++ + ++GL+G+Y T S+ V V+ +++E I + K ++ ++NRAK
Sbjct: 300 LANSYMSFSTSYADSGLWGMYIVTDSNEHNVRLIVNEILKEWKRIKSGK-ISDAEVNRAK 358
Query: 421 EATKSAVLMNLESRVIVSEDIGRQILTYGERKSVDQFLSVLEHITLDDITNIAQ-KIISS 479
K+A+L++L+ + EDIGRQ++T G+R S ++ ++ IT DDI A ++ +
Sbjct: 359 AQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLSPEEVFEQVDKITKDDIIMWANYRLQNK 418
Query: 480 PLTMAS 485
P++M +
Sbjct: 419 PVSMVA 424
>pdb|3HDI|A Chain A, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
pdb|3HDI|B Chain B, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
Length = 421
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 103/422 (24%), Positives = 199/422 (47%), Gaps = 23/422 (5%)
Query: 76 VKVTTLENGIRIASET-SVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSH 134
+ TL+NG+RI +E S + SIG+++ GS YE+ G S+ LE M FK T RS
Sbjct: 2 INTMTLDNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSA 61
Query: 135 LRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELR 194
I ++IGG + A S+E Y L + + ++ L D + F E+ +E +
Sbjct: 62 QEIAEFFDSIGGQVNAFTSKEYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERK 121
Query: 195 KLKSELGELHNNPQGLLLEAIHSTGYAG-ALGNPLLAPESALNRLDGTILEEIVAENFTA 253
+ E+ + + P ++ + + S Y +LG P+L LN + +L + +T
Sbjct: 122 VVFEEIKMVDDTPDDIVHDLLSSATYGKHSLGYPILGTVETLNSFNEGMLRHYMDRFYTG 181
Query: 254 PRMVLAASGVDLDELL-PIAEXXXXXXXXXXXXTEPKSVYIGGDYRQQADSPETHIALAF 312
+V++ +G DEL+ I E K +++ ++ ++ + H+ L +
Sbjct: 182 DYVVISVAGNVHDELIDKIKETFSQVKPTTYNYQGEKPMFLPNRIVRKKETEQAHLCLGY 241
Query: 313 EVPGGWLKDKEAIILTVLQVLMXXXXXXXXXXXXXXMHTRLYLRVLNEYQQIQSFSAFNS 372
PG + DK+ L +L ++ M +RL+ + + S +++S
Sbjct: 242 --PGLPIGDKDVYALVLLNNVL-----------GGSMSSRLFQDIREKRGLCYSVFSYHS 288
Query: 373 IFNNTGLFGIYACTGSDFVSKAVDLV--VRELILIATPKQVTQVQLNRAKEATKSAVLMN 430
F ++G+ IYA TG D + DLV ++E K +T+ +L KE K +++++
Sbjct: 289 SFRDSGMLTIYAGTGHDQLD---DLVYSIQETTSALAEKGLTEKELENGKEQLKGSLMLS 345
Query: 431 LESRVIVSEDIGRQILTYGERKSVDQFLSVLEHITLDDITNIAQKIISSPLTMASYVINV 490
LES G+ L + +S+D+ + + + D++ +A+ ++S+ +++ +IN
Sbjct: 346 LESTNSRMSRNGKNELLLKKHRSLDEMIEQINAVQKQDVSRLAKILLSASPSIS--LINA 403
Query: 491 PG 492
G
Sbjct: 404 NG 405
>pdb|1EZV|B Chain B, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KYO|B Chain B, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|M Chain M, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KB9|B Chain B, Yeast Cytochrome Bc1 Complex
pdb|1P84|B Chain B, Hdbt Inhibited Yeast Cytochrome Bc1 Complex
pdb|2IBZ|B Chain B, Yeast Cytochrome Bc1 Complex With Stigmatellin
pdb|3CX5|B Chain B, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CX5|M Chain M, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CXH|B Chain B, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer.
pdb|3CXH|M Chain M, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer
Length = 352
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 3/125 (2%)
Query: 106 GSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDALK 165
GS Y T G ++LL + F++T RS L++VRE E +GG+ ++ RE + LK
Sbjct: 22 GSRYATKD--GVAHLLNRFNFQNTNTRSALKLVRESELLGGTFKSTLDREYITLKATFLK 79
Query: 166 TYVPEMVELLVDCVRNPVFLDWEVNEE-LRKLKSELGELHNNPQGLLLEAIHSTGYAGAL 224
+P V L D + F E+ E L + + P + +++ + L
Sbjct: 80 DDLPYYVNALADVLYKTAFKPHELTESVLPAARYDYAVAEQCPVKSAEDQLYAITFRKGL 139
Query: 225 GNPLL 229
GNPLL
Sbjct: 140 GNPLL 144
>pdb|1EZV|A Chain A, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KYO|A Chain A, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|L Chain L, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
Length = 430
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 95/421 (22%), Positives = 171/421 (40%), Gaps = 47/421 (11%)
Query: 77 KVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLR 136
+VT L NGI +A+E + + AS+G+ G+ E P + G SNL + + F S +N +
Sbjct: 2 EVTQLSNGIVVATEHNPAHTASVGVVFGSGAANENPYNNGVSNLWKNI-FLSKENSA--- 57
Query: 137 IVREVEAIGGSILASA-SREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVN----- 190
V A G L+S SR+ Y +L + ++ L N F+ + N
Sbjct: 58 ----VAAKEGLALSSNISRDFQSYIVSSLPGSTDKSLDFL-----NQSFIQQKANLLSSS 108
Query: 191 --EELRK--LKSELGELHNNPQGLLLEAIHSTGYAGA-LGNPLLAPESALNRLDGTILEE 245
E +K LK N+ +LE +HST + L P +L L LE
Sbjct: 109 NFEATKKSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTLESLENLVVADLES 168
Query: 246 IVAENFTAPRMVLAASG-VDLDELL-PIAEXXXXXXXXXXXXTEPKSVYIGGDYRQQADS 303
+F V+ +G + ++L+ I + K+ ++G + R + D+
Sbjct: 169 FANNHFLNSNAVVVGTGNIKHEDLVNSIESKNLSLQTGTKPVLKKKAAFLGSEVRLRDDT 228
Query: 304 -PETHIALAFE-----VPGGWLKDKEAIILTVLQVLMXXXXXXXXXXXXXXMHTRLYLRV 357
P+ I+LA E P ++ A I + L
Sbjct: 229 LPKAWISLAVEGEPVNSPNYFVAKLAAQIFGSYNAF----------EPASRLQGIKLLDN 278
Query: 358 LNEYQQIQSFSAFNSIFNNTGLFGIYACTGS-DFVSKAVDLVVRELILIATPKQVTQVQL 416
+ EYQ +F+ F+ + ++GL+G T + + + +++ + VT ++
Sbjct: 279 IQEYQLCDNFNHFSLSYKDSGLWGFSTATRNVTMIDDLIHFTLKQWNRLTIS--VTDTEV 336
Query: 417 NRAKEATKSAVLMNLESRVIVSED--IGRQILTYGERKSVDQFLSVLEHITLDDITNIAQ 474
RAK K + ES V++ +G ++L G + S+ + ++ IT+ D+ A
Sbjct: 337 ERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLSLGEAFKKIDAITVKDVKAWAG 396
Query: 475 K 475
K
Sbjct: 397 K 397
>pdb|1KB9|A Chain A, Yeast Cytochrome Bc1 Complex
pdb|1P84|A Chain A, Hdbt Inhibited Yeast Cytochrome Bc1 Complex
pdb|2IBZ|A Chain A, Yeast Cytochrome Bc1 Complex With Stigmatellin
pdb|3CX5|A Chain A, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CX5|L Chain L, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CXH|A Chain A, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer.
pdb|3CXH|L Chain L, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer
Length = 431
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 96/422 (22%), Positives = 171/422 (40%), Gaps = 48/422 (11%)
Query: 77 KVTTLENGIRIASETSVSP-AASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHL 135
+VT L NGI +A+E + S AS+G+ G+ E P + G SNL + + F S +N +
Sbjct: 2 EVTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNI-FLSKENSA-- 58
Query: 136 RIVREVEAIGGSILASA-SREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVN---- 190
V A G L+S SR+ Y +L + ++ L N F+ + N
Sbjct: 59 -----VAAKEGLALSSNISRDFQSYIVSSLPGSTDKSLDFL-----NQSFIQQKANLLSS 108
Query: 191 ---EELRK--LKSELGELHNNPQGLLLEAIHSTGYAGA-LGNPLLAPESALNRLDGTILE 244
E +K LK N+ +LE +HST + L P +L L LE
Sbjct: 109 SNFEATKKSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTLESLENLVVADLE 168
Query: 245 EIVAENFTAPRMVLAASG-VDLDELL-PIAEXXXXXXXXXXXXTEPKSVYIGGDYRQQAD 302
+F V+ +G + ++L+ I + K+ ++G + R + D
Sbjct: 169 SFANNHFLNSNAVVVGTGNIKHEDLVNSIESKNLSLQTGTKPVLKKKAAFLGSEVRLRDD 228
Query: 303 S-PETHIALAFE-----VPGGWLKDKEAIILTVLQVLMXXXXXXXXXXXXXXMHTRLYLR 356
+ P+ I+LA E P ++ A I + L
Sbjct: 229 TLPKAWISLAVEGEPVNSPNYFVAKLAAQIFGSYNAF----------EPASRLQGIKLLD 278
Query: 357 VLNEYQQIQSFSAFNSIFNNTGLFGIYACTGS-DFVSKAVDLVVRELILIATPKQVTQVQ 415
+ EYQ +F+ F+ + ++GL+G T + + + +++ + VT +
Sbjct: 279 NIQEYQLCDNFNHFSLSYKDSGLWGFSTATRNVTMIDDLIHFTLKQWNRLTIS--VTDTE 336
Query: 416 LNRAKEATKSAVLMNLESRVIVSED--IGRQILTYGERKSVDQFLSVLEHITLDDITNIA 473
+ RAK K + ES V++ +G ++L G + S+ + ++ IT+ D+ A
Sbjct: 337 VERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLSLGEAFKKIDAITVKDVKAWA 396
Query: 474 QK 475
K
Sbjct: 397 GK 398
>pdb|3AMJ|C Chain C, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
pdb|3AMJ|A Chain A, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
Length = 437
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 5/155 (3%)
Query: 79 TTLENGIRIA-SETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRI 137
TTL NG+++ E +P ++ GS+ ET + G ++ LE M FK TK+
Sbjct: 10 TTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGEF 69
Query: 138 VREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLK 197
+ V A+GG A +R+ Y + + +++ L D + N V D +E++ +
Sbjct: 70 SKRVAAMGGRDNAFTTRDYTAYYQQVPSSRLSDVMGLEADRMANLVVDDELFKKEIQVIA 129
Query: 198 SE-LGELHNNPQGLLLEAIHSTGYAGALGNPLLAP 231
E + P+ EA+ + Y + +P P
Sbjct: 130 EERRWRTDDKPRSKAYEALMAASY---VAHPYRVP 161
>pdb|3AMI|A Chain A, The Crystal Structure Of The M16b Metallopeptidase Subunit
From Sphingomonas Sp. A1
pdb|3AMI|B Chain B, The Crystal Structure Of The M16b Metallopeptidase Subunit
From Sphingomonas Sp. A1
Length = 445
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 5/155 (3%)
Query: 79 TTLENGIRIA-SETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRI 137
TTL NG+++ E +P ++ GS+ ET + G ++ LE M FK TK+
Sbjct: 10 TTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGEF 69
Query: 138 VREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLK 197
+ V A+GG A +R+ Y + + +++ L D + N V D +E++ +
Sbjct: 70 SKRVAAMGGRDNAFTTRDYTAYYQQVPSSRLSDVMGLEADRMANLVVDDELFKKEIQVIA 129
Query: 198 SE-LGELHNNPQGLLLEAIHSTGYAGALGNPLLAP 231
E + P+ EA+ + Y + +P P
Sbjct: 130 EERRWRTDDKPRSKAYEALMAASY---VAHPYRVP 161
>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|3QZ2|B Chain B, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|4DTT|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
pdb|4DTT|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
Length = 990
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 66/151 (43%), Gaps = 12/151 (7%)
Query: 81 LENGIR---IASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRI 137
L NGI+ I+ T+ +A++ +++ GS+ + P+ G S+ LE M F TK
Sbjct: 40 LANGIKVLLISDPTTDKSSAALDVHI--GSLSDPPNIAGLSHFLEHMLFLGTKKYPKENE 97
Query: 138 VRE-VEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKL 196
+ + GS A S E Y FD ++ ++ +P+F + + E+ +
Sbjct: 98 YSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAV 157
Query: 197 KSELGELHNNPQGLLLEAIHSTGYAGALGNP 227
SE + + ++ +A A GNP
Sbjct: 158 DSE------HEKNVMNDAWRLFQLEKATGNP 182
>pdb|3CWW|A Chain A, Crystal Structure Of Ide-Bradykinin Complex
pdb|3CWW|B Chain B, Crystal Structure Of Ide-Bradykinin Complex
Length = 990
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 6/123 (4%)
Query: 81 LENGIR---IASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRI 137
L NGI+ I+ T+ +A++ +++ GS+ + P+ G S+ L+ M F TK
Sbjct: 40 LANGIKVLLISDPTTDKSSAALDVHI--GSLSDPPNIAGLSHFLQHMLFLGTKKYPKENE 97
Query: 138 VRE-VEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKL 196
+ + GS A S E Y FD ++ ++ +P+F + + E+ +
Sbjct: 98 YSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAV 157
Query: 197 KSE 199
SE
Sbjct: 158 DSE 160
>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|3HGZ|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
Length = 969
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 66/151 (43%), Gaps = 12/151 (7%)
Query: 81 LENGIR---IASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRI 137
L NGI+ I+ T+ +A++ +++ GS+ + P+ G S+ L+ M F TK
Sbjct: 27 LANGIKVLLISDPTTDKSSAALDVHI--GSLSDPPNIAGLSHFLQHMLFLGTKKYPKENE 84
Query: 138 VRE-VEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKL 196
+ + GS A S E Y FD ++ ++ +P+F + + E+ +
Sbjct: 85 YSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAV 144
Query: 197 KSELGELHNNPQGLLLEAIHSTGYAGALGNP 227
SE + + ++ +A A GNP
Sbjct: 145 DSE------HEKNVMNDAWRLFQLEKATGNP 169
>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WBY|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WC0|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|2WC0|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|3H44|A Chain A, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3H44|B Chain B, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3OFI|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3OFI|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3N56|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N56|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N57|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|3N57|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|2YPU|A Chain A, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
pdb|2YPU|B Chain B, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
Length = 990
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 66/151 (43%), Gaps = 12/151 (7%)
Query: 81 LENGIR---IASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRI 137
L NGI+ I+ T+ +A++ +++ GS+ + P+ G S+ L+ M F TK
Sbjct: 40 LANGIKVLLISDPTTDKSSAALDVHI--GSLSDPPNIAGLSHFLQHMLFLGTKKYPKENE 97
Query: 138 VRE-VEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKL 196
+ + GS A S E Y FD ++ ++ +P+F + + E+ +
Sbjct: 98 YSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAV 157
Query: 197 KSELGELHNNPQGLLLEAIHSTGYAGALGNP 227
SE + + ++ +A A GNP
Sbjct: 158 DSE------HEKNVMNDAWRLFQLEKATGNP 182
>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
pdb|3E4Z|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
Length = 990
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 66/151 (43%), Gaps = 12/151 (7%)
Query: 81 LENGIR---IASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRI 137
L NGI+ I+ T+ +A++ +++ GS+ + P+ G S+ L+ M F TK
Sbjct: 40 LANGIKVLLISDPTTDKSSAALDVHI--GSLSDPPNIAGLSHFLQHMLFLGTKKYPKENE 97
Query: 138 VRE-VEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKL 196
+ + GS A S E Y FD ++ ++ +P+F + + E+ +
Sbjct: 98 YSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAV 157
Query: 197 KSELGELHNNPQGLLLEAIHSTGYAGALGNP 227
SE + + ++ +A A GNP
Sbjct: 158 DSE------HEKNVMNDAWRLFQLEKATGNP 182
>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|3E4A|B Chain B, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|2WK3|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
pdb|2WK3|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
Length = 1019
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 66/151 (43%), Gaps = 12/151 (7%)
Query: 81 LENGIR---IASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRI 137
L NGI+ I+ T+ +A++ +++ GS+ + P+ G S+ L+ M F TK
Sbjct: 69 LANGIKVLLISDPTTDKSSAALDVHI--GSLSDPPNIAGLSHFLQHMLFLGTKKYPKENE 126
Query: 138 VRE-VEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKL 196
+ + GS A S E Y FD ++ ++ +P+F + + E+ +
Sbjct: 127 YSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAV 186
Query: 197 KSELGELHNNPQGLLLEAIHSTGYAGALGNP 227
SE + + ++ +A A GNP
Sbjct: 187 DSE------HEKNVMNDAWRLFQLEKATGNP 211
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,316,185
Number of Sequences: 62578
Number of extensions: 505789
Number of successful extensions: 1532
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1463
Number of HSP's gapped (non-prelim): 37
length of query: 503
length of database: 14,973,337
effective HSP length: 103
effective length of query: 400
effective length of database: 8,527,803
effective search space: 3411121200
effective search space used: 3411121200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)