Query 010710
Match_columns 503
No_of_seqs 225 out of 1477
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 12:38:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010710.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010710hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hr6_A Alpha-MPP, mitochondria 100.0 5.5E-62 1.9E-66 504.7 52.8 425 74-501 4-451 (475)
2 3eoq_A Putative zinc protease; 100.0 4.2E-57 1.4E-61 458.8 47.6 395 76-486 2-401 (406)
3 3hdi_A Processing protease; CA 100.0 6.1E-57 2.1E-61 459.8 48.5 404 76-494 2-411 (421)
4 1hr6_B Beta-MPP, mitochondrial 100.0 3.9E-56 1.3E-60 456.9 51.4 424 73-501 4-442 (443)
5 1pp9_B Ubiquinol-cytochrome C 100.0 1.5E-55 5.2E-60 451.9 53.2 418 72-496 20-439 (439)
6 1pp9_A Ubiquinol-cytochrome C 100.0 3.7E-56 1.3E-60 457.5 48.5 421 74-501 12-442 (446)
7 3ami_A Zinc peptidase; alpha/b 100.0 4.7E-54 1.6E-58 441.7 45.6 401 74-486 5-418 (445)
8 3gwb_A Peptidase M16 inactive 100.0 1.8E-53 6.3E-58 435.8 43.8 398 74-486 12-418 (434)
9 3cx5_A Cytochrome B-C1 complex 100.0 1.7E-52 5.9E-57 428.1 44.3 410 77-501 2-427 (431)
10 3amj_B Zinc peptidase inactive 100.0 2.4E-52 8.1E-57 426.3 44.1 402 74-491 2-416 (424)
11 3d3y_A Uncharacterized protein 100.0 1E-47 3.5E-52 391.9 42.7 381 79-479 6-413 (425)
12 3go9_A Insulinase family prote 100.0 3.7E-46 1.3E-50 386.5 40.0 402 74-500 24-461 (492)
13 1q2l_A Protease III; hydrolase 100.0 4.2E-45 1.4E-49 408.7 39.7 398 74-486 19-436 (939)
14 3cww_A Insulysin, insulin-degr 100.0 2.3E-42 7.9E-47 388.4 37.6 398 73-486 32-452 (990)
15 2fge_A Atprep2;, zinc metallop 100.0 2.9E-42 9.9E-47 387.5 32.2 389 74-480 36-473 (995)
16 3s5m_A Falcilysin; M16 metallo 100.0 4.6E-41 1.6E-45 374.1 36.4 407 72-493 83-590 (1193)
17 3cx5_B Cytochrome B-C1 complex 100.0 7.5E-40 2.6E-44 325.5 28.8 344 85-495 1-351 (352)
18 1q2l_A Protease III; hydrolase 100.0 4.3E-36 1.5E-40 335.8 35.3 380 75-481 499-894 (939)
19 2fge_A Atprep2;, zinc metallop 100.0 5E-34 1.7E-38 320.6 33.4 380 79-486 556-972 (995)
20 3cww_A Insulysin, insulin-degr 100.0 9.8E-33 3.3E-37 310.2 37.4 379 75-479 518-917 (990)
21 3s5m_A Falcilysin; M16 metallo 100.0 8.9E-30 3E-34 283.6 23.4 377 82-486 724-1170(1193)
22 3ih6_A Putative zinc protease; 99.9 1.5E-22 5E-27 183.5 20.2 172 299-486 18-190 (197)
23 3ih6_A Putative zinc protease; 98.2 3.1E-05 1E-09 68.9 15.4 161 94-262 22-192 (197)
24 3cx5_A Cytochrome B-C1 complex 97.8 0.00041 1.4E-08 69.5 16.0 175 86-264 222-414 (431)
25 3hdi_A Processing protease; CA 97.8 0.00028 9.5E-09 70.7 14.4 175 303-500 21-200 (421)
26 3amj_B Zinc peptidase inactive 97.8 0.00099 3.4E-08 66.6 17.9 180 303-498 23-205 (424)
27 1hr6_B Beta-MPP, mitochondrial 97.8 0.0013 4.5E-08 66.1 18.9 166 93-262 243-426 (443)
28 3eoq_A Putative zinc protease; 97.7 0.00037 1.3E-08 69.4 14.4 159 95-262 234-402 (406)
29 3cx5_B Cytochrome B-C1 complex 97.7 0.0013 4.4E-08 63.9 17.5 174 303-500 10-185 (352)
30 1pp9_A Ubiquinol-cytochrome C 97.7 0.0034 1.2E-07 63.2 20.2 178 302-500 31-212 (446)
31 3gwb_A Peptidase M16 inactive 97.6 0.0018 6.1E-08 64.9 17.4 175 303-498 33-212 (434)
32 1pp9_B Ubiquinol-cytochrome C 97.6 0.0019 6.4E-08 64.8 17.4 176 303-500 42-220 (439)
33 1hr6_A Alpha-MPP, mitochondria 97.5 0.0051 1.7E-07 62.5 19.4 178 302-500 23-203 (475)
34 3d3y_A Uncharacterized protein 97.5 0.0031 1.1E-07 62.8 17.5 183 303-499 22-217 (425)
35 3ami_A Zinc peptidase; alpha/b 97.3 0.01 3.5E-07 59.6 18.7 175 303-498 26-205 (445)
36 3go9_A Insulinase family prote 96.3 0.054 1.8E-06 55.2 14.6 175 92-275 262-461 (492)
37 1g6u_A Domain swapped dimer; d 27.9 1E+02 0.0035 18.5 4.0 25 396-421 3-27 (48)
38 3ov5_A VIRB7 (XAC2622), unchar 25.6 69 0.0023 22.8 3.4 45 218-262 30-74 (85)
39 2l4w_A Uncharacterized protein 24.6 87 0.003 23.7 4.0 45 218-262 60-104 (120)
No 1
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=100.00 E-value=5.5e-62 Score=504.69 Aligned_cols=425 Identities=31% Similarity=0.518 Sum_probs=390.1
Q ss_pred CceEEEEcCCCcEEEEecCCCCeEEEEEEEeccccCCCCCCCcHHHHHHHHHcccCCCCCHHHHHHHHHHcCCeeeEeec
Q 010710 74 GKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASAS 153 (503)
Q Consensus 74 ~~~~~~~L~NG~~v~~~~~~~~~~~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~ 153 (503)
+.++.++|+||++|++.+.+.+.+++.+++++|+++|++++.|++|+++||+|+||.+++..++.+.++..|+.++++++
T Consensus 4 ~~~~~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~~~~~~~~~le~~G~~~na~t~ 83 (475)
T 1hr6_A 4 DNFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTSS 83 (475)
T ss_dssp TCCEEEECTTSCEEEEESCCCSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCHHHHHHHHHHTTSCEEEEEC
T ss_pred CCceEEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCCCCCHHHHHHHHHHcCCEEEEEEc
Confidence 47899999999999988877899999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEecccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhHhhhCChHHHHHHHHHHHhc-CCCCCCCCCCCh
Q 010710 154 REQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLLAPE 232 (503)
Q Consensus 154 ~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~ 232 (503)
++++.|.+++++++++.+|+++.+++.+|.|++++|+++|..+.+|+++..++|..++.+.++..+| ++||+.+..|+.
T Consensus 84 ~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~ 163 (475)
T 1hr6_A 84 RENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPR 163 (475)
T ss_dssp SSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCG
T ss_pred cCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCH
Confidence 9999999999999999999999999999999999999999999999999889999999999999999 899999999999
Q ss_pred hhhcCCCHHHHHHHHHhhcCCCCeEEEEeCCChHHHHHHHHhhcCCCCCCCCC-CCCCCCccCCceEEc------CCCCc
Q 010710 233 SALNRLDGTILEEIVAENFTAPRMVLAASGVDLDELLPIAEPLLSDLPRLPPP-TEPKSVYIGGDYRQQ------ADSPE 305 (503)
Q Consensus 233 ~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G~~~~~l~~l~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~------~~~~~ 305 (503)
+.|++++.++|++||+++|.|++++++++|++++++.++++++|+.|+....+ ..+.+.+.++..++. .+.++
T Consensus 164 ~~l~~it~~~l~~f~~~~y~p~n~~l~v~G~d~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (475)
T 1hr6_A 164 GLIPSISKYYLLDYRNKFYTPENTVAAFVGVPHEKALELTGKYLGDWQSTHPPITKKVAQYTGGESCIPPAPVFGNLPEL 243 (475)
T ss_dssp GGGGGCCHHHHHHHHHHHCCGGGEEEEEESSCHHHHHHHHHHHHTTCCCCCCCCCCCCCCCCCEEEEECCCCCCSSSCCC
T ss_pred HHHhhcCHHHHHHHHHHhCCcccEEEEEeCCCHHHHHHHHHHHhccCCCCCCCCCCCCCCCcCCeEEEecccccCCCccc
Confidence 99999999999999999999999999999999999999999999999865443 112234444444444 46788
Q ss_pred eEEEEEeeeCCCCCCCchhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeeccccCcceEEEEEE
Q 010710 306 THIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYAC 385 (503)
Q Consensus 306 ~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~~~~~gg~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~~~~~~f~i~~~ 385 (503)
+++.++|++++ .++++..++.|++.|||++++||+||||+||+++||++||++.|++|+++++...+.+.|.|.+++.
T Consensus 244 ~~v~~~~~~~~--~~~~d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~y~v~s~~~~~~~~g~~~i~~~ 321 (475)
T 1hr6_A 244 FHIQIGFEGLP--IDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFGISLS 321 (475)
T ss_dssp EEEEEEEECCC--TTCTTHHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSEEEEEEEEEECSSCEEEEEEEE
T ss_pred eEEEEEEecCC--CCCccHHHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHhcCCeeEEEEeccccCCCceEEEEEE
Confidence 99999999776 5778999999999999999999999999999999999999999999999999877777899999999
Q ss_pred eCcchHHHHHHHHHHHHHHhhC---CCCCCHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhCCcCCHHHHHHHHc
Q 010710 386 TGSDFVSKAVDLVVRELILIAT---PKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERKSVDQFLSVLE 462 (503)
Q Consensus 386 ~~p~~~~~~~~~~~~~l~~~~~---~g~i~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~ 462 (503)
++|++..++++.+.+++.++.+ +| ++++||+++|+.++.++....+++..++..++++++.+|.+.+.+++.+.|+
T Consensus 322 ~~~~~~~~~~~~~~~~l~~l~~~~~~~-~t~~El~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~ 400 (475)
T 1hr6_A 322 CIPQAAPQAVEVIAQQMYNTFANKDLR-LTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKIE 400 (475)
T ss_dssp ECGGGHHHHHHHHHHHHHTTTTCTTSC-CCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred eCHHHHHHHHHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 9999999999999999999987 66 9999999999999999999999999999999987766787767888999999
Q ss_pred cCCHHHHHHHHHHhhcC----------CceEEEE--ccCCCCHHHHHhHhh
Q 010710 463 HITLDDITNIAQKIISS----------PLTMASY--VINVPGYESVSSKFH 501 (503)
Q Consensus 463 ~vT~~di~~~a~~~l~~----------~~~~~~~--~~~~p~~~~~~~~~~ 501 (503)
+||++||++++++|+.+ +++++++ ...+|+++++.+.+.
T Consensus 401 ~vt~~dv~~~a~~~l~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~ 451 (475)
T 1hr6_A 401 DLKPDDISRVAEMIFTGNVNNAGNGKGRATVVMQGDRGSFGDVENVLKAYG 451 (475)
T ss_dssp TCCHHHHHHHHHHHHTTCCCCTTCCCCCCEEEEESCGGGGCCHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHhhhccccccccCCCcEEEEECCcccCcCHHHHHHHhc
Confidence 99999999999999976 6677777 667899999988775
No 2
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=100.00 E-value=4.2e-57 Score=458.78 Aligned_cols=395 Identities=19% Similarity=0.240 Sum_probs=362.5
Q ss_pred eEEEEcCCCcEEEEecCC-CCeEEEEEEEeccccCCCCCCCcHHHHHHHHHcccCCCCCHHHHHHHHHHcCCeeeEeecc
Q 010710 76 VKVTTLENGIRIASETSV-SPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASR 154 (503)
Q Consensus 76 ~~~~~L~NG~~v~~~~~~-~~~~~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~ 154 (503)
++.++|+||++|++.+++ .+.+++.+++++|+.+|+++..|++|+++||+|+||.+++..++.+.++..|+.+|+++++
T Consensus 2 ~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~lehmlf~Gt~~~~~~~~~~~l~~~G~~~na~t~~ 81 (406)
T 3eoq_A 2 FREAELRNGLRVIAEVVPGARSVALGYFVKTGARDETKEESGVSHFLEHMVFKGPEDMDALAVNRAFDRMGAQYNAFTSE 81 (406)
T ss_dssp EEEEECTTSCEEEEEECTTCSCEEEEEEESCSGGGSCGGGTTHHHHHHHHHTTCCTTCCHHHHHHHHHHTTCEEEEEECS
T ss_pred ceeEEcCCCCEEEEEECCCCCeEEEEEEEccccCCCCCCCCCHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCccceecC
Confidence 578999999999976666 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEecccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhHhhhCChHHHHHHHHHHHhc-CCCCCCCCCCChh
Q 010710 155 EQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLLAPES 233 (503)
Q Consensus 155 ~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~ 233 (503)
+++.|.+++++++++.+|+++.+++ +|.|++++|+++|..+.+|++...++|...+.+.++..+| +|||+++..|+.+
T Consensus 82 d~t~y~~~~~~~~l~~~l~ll~d~~-~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~ 160 (406)
T 3eoq_A 82 EATVYYGAVLPEFAYDLLGLFAKLL-RPALREEDFQTEKLVILEEIARYQDRPGFMAYEWARARFFQGHPLGNSVLGTRE 160 (406)
T ss_dssp SCEEEEEEECGGGHHHHHHHHHHHT-SCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGGGCCSSCCHH
T ss_pred CeEEEEEEecHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCCcCCHH
Confidence 9999999999999999999999999 9999999999999999999999999999999999999999 9999999999999
Q ss_pred hhcCCCHHHHHHHHHhhcCCCCeEEEEeC-CChHHHHHHHHhhcCCCCCCCCCCCCC-CCccCCceEEcCCC-CceEEEE
Q 010710 234 ALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTEPK-SVYIGGDYRQQADS-PETHIAL 310 (503)
Q Consensus 234 ~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~v~~ 310 (503)
.|++++.++|++||+++|.|+|++++++| ++++++.++++++|++|+..+.+.... ....++...+..+. +++++.+
T Consensus 161 ~i~~~t~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~ 240 (406)
T 3eoq_A 161 SITALTREGMAAYHRRRYLPKNMVLAATGRVDFDRLLAEAERLTEAWPEGEAERAYPPLTPAFGVEERPYEKARALYLVA 240 (406)
T ss_dssp HHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCCCCCCCCCCCCCEEEEEECTTCSSEEEEE
T ss_pred HHhhCCHHHHHHHHHHhCCccCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEEecCCccceEEEE
Confidence 99999999999999999999999999999 999999999999999998654332211 12233344555666 8999999
Q ss_pred EeeeCCCCCCCchhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeeccccCcceEEEEEEeCcch
Q 010710 311 AFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACTGSDF 390 (503)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~vl~~lL~~~~~~~~gg~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~~~~~~f~i~~~~~p~~ 390 (503)
+|++++ .++++..++.|++.+|||+ ++++||++||+ .|++|+++++...+.+.|.|.+++.++|++
T Consensus 241 ~~~~~~--~~~~d~~~l~vl~~iLgg~-----------~~srL~~~lre-~gl~y~~~s~~~~~~~~g~~~i~~~~~~~~ 306 (406)
T 3eoq_A 241 LFPGVA--YQEEARFPGQVLAHLLGEE-----------GSGRLHFALVD-KGLAEVASFGLEEADRAGTFHAYVQADPAR 306 (406)
T ss_dssp EEECCC--TTCTTHHHHHHHHHHHHCT-----------TTSHHHHHTTT-TTSEEEEEEEEEECSSCEEEEEEEEECGGG
T ss_pred EecCCC--CCCchHHHHHHHHHHhCCC-----------cchHHHHHHHH-cCCeeEEEEEecccCCceEEEEEEEeCcch
Confidence 999987 6788999999999999975 44999999999 999999999988888889999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhCCcCCHHHHHHHHccCCHHHHH
Q 010710 391 VSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERKSVDQFLSVLEHITLDDIT 470 (503)
Q Consensus 391 ~~~~~~~~~~~l~~~~~~g~i~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vT~~di~ 470 (503)
..++++.+.+++.++.++| ++++||+++|+.++.++....+++..++..++...+.++.+.+.+++.+.|++||++||+
T Consensus 307 ~~~~~~~i~~~l~~l~~~~-~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~ 385 (406)
T 3eoq_A 307 KGEVLAVLQEELDRLGREG-VGEEEVERAKTPLATGLVFAGETPMQRLFHLGMEYLYTGRYLSLEEVKARVQRVTSREVN 385 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhCCHHHHH
Confidence 9999999999999998887 999999999999999999999999999999998888788888899999999999999999
Q ss_pred HHHHHhhcCCceEEEE
Q 010710 471 NIAQKIISSPLTMASY 486 (503)
Q Consensus 471 ~~a~~~l~~~~~~~~~ 486 (503)
++|++|+.++..++++
T Consensus 386 ~~a~~~l~~~~~~~vv 401 (406)
T 3eoq_A 386 ALLERGFLEKGLYYLV 401 (406)
T ss_dssp HHHHTTTTTSCEEEEE
T ss_pred HHHHHhcCcccEEEEE
Confidence 9999999877764433
No 3
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=100.00 E-value=6.1e-57 Score=459.84 Aligned_cols=404 Identities=24% Similarity=0.404 Sum_probs=368.5
Q ss_pred eEEEEcCCCcEEEEecCC-CCeEEEEEEEeccccCCCCCCCcHHHHHHHHHcccCCCCCHHHHHHHHHHcCCeeeEeecc
Q 010710 76 VKVTTLENGIRIASETSV-SPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASR 154 (503)
Q Consensus 76 ~~~~~L~NG~~v~~~~~~-~~~~~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~ 154 (503)
++.++|+||++|++.+.+ .+.+++.+++++|+.+|+++..|++|+++||+|+||.+++..++.+.++..|+.++++++.
T Consensus 2 ~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~leh~lf~gt~~~~~~~~~~~l~~~G~~~na~t~~ 81 (421)
T 3hdi_A 2 INTMTLDNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQEIAEFFDSIGGQVNAFTSK 81 (421)
T ss_dssp CEEEECTTSCEEEEEECTTCSEEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSBBSSSBHHHHHHHHHTTTSCEEEEECS
T ss_pred ceEEEcCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCceeeeecc
Confidence 578999999999976655 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEecccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhHhhhCChHHHHHHHHHHHhc-CCCCCCCCCCChh
Q 010710 155 EQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLLAPES 233 (503)
Q Consensus 155 ~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~ 233 (503)
+.+.|++++++++++.+|+++.+++.+|.|++++|++++..+.++++...++|...+.+.+...+| +|||+.+..|+.+
T Consensus 82 d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~ 161 (421)
T 3hdi_A 82 EYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERKVVFEEIKMVDDTPDDIVHDLLSSATYGKHSLGYPILGTVE 161 (421)
T ss_dssp SCEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTSGGGSCTTCCHH
T ss_pred ceEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCcCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred hhcCCCHHHHHHHHHhhcCCCCeEEEEeC-CChHHHHHHHHhhcCCCCCCCCCCC-CCCCccCCceEEcCCCCceEEEEE
Q 010710 234 ALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTE-PKSVYIGGDYRQQADSPETHIALA 311 (503)
Q Consensus 234 ~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~ 311 (503)
.|++++.+++++||+++|.|++++++++| ++ +++.++++++|+.||....+.. ..+.+.+.......+.+++++.++
T Consensus 162 ~l~~it~~~l~~f~~~~y~p~n~~l~v~Gd~~-~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~~~ 240 (421)
T 3hdi_A 162 TLNSFNEGMLRHYMDRFYTGDYVVISVAGNVH-DELIDKIKETFSQVKPTTYNYQGEKPMFLPNRIVRKKETEQAHLCLG 240 (421)
T ss_dssp HHHHCCHHHHHHHHHHHSSTTTEEEEEEESCC-HHHHHHHHHHTTSSCCCCCCCCCCCCCCCCCEEEEECCCSEEEEEEE
T ss_pred HHHhCCHHHHHHHHHHhcCcccEEEEEEeCCC-HHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEecCCCCceEEEEE
Confidence 99999999999999999999999999999 99 9999999999999987654332 223333444445567889999999
Q ss_pred eeeCCCCCCCchhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeeccccCcceEEEEEEeCcchH
Q 010710 312 FEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACTGSDFV 391 (503)
Q Consensus 312 ~~~~~~~~~~~~~~~~~vl~~lL~~~~~~~~gg~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~~~~~~f~i~~~~~p~~~ 391 (503)
|+++. .++++.+++.|++.+||++ ++++||++||++.|++|+++++...+.+.|.|.+++.++|++.
T Consensus 241 ~~~~~--~~~~d~~~l~vl~~iLgg~-----------~~srL~~~lRe~~glay~~~s~~~~~~~~g~~~i~~~~~~~~~ 307 (421)
T 3hdi_A 241 YPGLP--IGDKDVYALVLLNNVLGGS-----------MSSRLFQDIREKRGLCYSVFSYHSSFRDSGMLTIYAGTGHDQL 307 (421)
T ss_dssp EECCC--TTCTTHHHHHHHHHHHTSS-----------SSSHHHHHHTTTTCCCSCEEEEEEECSSCEEEEEEEEEEGGGH
T ss_pred EecCC--CCCchHHHHHHHHHHhCCC-----------cccHHHHHHHHhcCCEEEEEEeecccCCCceEEEEEEeCHHHH
Confidence 99886 6889999999999999975 4499999999999999999998877778999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhCCcCCHHHHHHHHccCCHHHHHH
Q 010710 392 SKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERKSVDQFLSVLEHITLDDITN 471 (503)
Q Consensus 392 ~~~~~~~~~~l~~~~~~g~i~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vT~~di~~ 471 (503)
.++++.+.+++.++.++| ++++||+++|+.++.++....+++..++..++...+..+...+.+++.+.|++||++||++
T Consensus 308 ~~~~~~i~~~l~~l~~~~-~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~ 386 (421)
T 3hdi_A 308 DDLVYSIQETTSALAEKG-LTEKELENGKEQLKGSLMLSLESTNSRMSRNGKNELLLKKHRSLDEMIEQINAVQKQDVSR 386 (421)
T ss_dssp HHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHcCCHHHHHH
Confidence 999999999999999887 9999999999999999999999999999988877776777778899999999999999999
Q ss_pred HHHHhhcCCceEEEE--ccCCCCHH
Q 010710 472 IAQKIISSPLTMASY--VINVPGYE 494 (503)
Q Consensus 472 ~a~~~l~~~~~~~~~--~~~~p~~~ 494 (503)
+|++|+..+.+++++ ...+|.++
T Consensus 387 ~a~~~~~~~~~~~vvgp~~~ip~~~ 411 (421)
T 3hdi_A 387 LAKILLSASPSISLINANGELPKAL 411 (421)
T ss_dssp HHHHHTTSCCEEEEEESSCSCCSCS
T ss_pred HHHHHcccCcEEEEECchhcCcchh
Confidence 999999445666666 67777653
No 4
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=100.00 E-value=3.9e-56 Score=456.88 Aligned_cols=424 Identities=28% Similarity=0.454 Sum_probs=378.9
Q ss_pred CCceEEEEcCCCcEEEEecCCCC-eEEEEEEEeccccCCCCCCCcHHHHHHHHHcccCCCCCHHHHHHHHHHcCCeeeEe
Q 010710 73 PGKVKVTTLENGIRIASETSVSP-AASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILAS 151 (503)
Q Consensus 73 ~~~~~~~~L~NG~~v~~~~~~~~-~~~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~ 151 (503)
.+.++.++|+||++|++.+++.+ .+++.+++++|+..++++..|++|+++||+++||++++..++.+.++..|++++++
T Consensus 4 ~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e~~~~~G~ah~le~~~~~Gt~~~~~~~l~~~l~~~g~~~na~ 83 (443)
T 1hr6_B 4 IPGTRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQQGIELEIENIGSHLNAY 83 (443)
T ss_dssp -CCCEEEECTTSCEEEEEECSSCSEEEEEEEEECSGGGCCTTTTTHHHHHHHHTTSBBSSCBHHHHHHHHHHTTCEEEEE
T ss_pred CCCceEEECCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCeEEEE
Confidence 35789999999999997777755 99999999999999999999999999999999999999999999999999999999
Q ss_pred eccceEEEEEecccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhHhhhCChHHHHHHHHHHHhc-CCCCCCCCCC
Q 010710 152 ASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLLA 230 (503)
Q Consensus 152 ~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~ 230 (503)
++.+++.|++++++++++.+|+++.+++.+|.|++++|++++..+.++++...++|...+.+.++..+| +|||+.+..|
T Consensus 84 t~~~~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 163 (443)
T 1hr6_B 84 TSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILG 163 (443)
T ss_dssp ECSSEEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSC
T ss_pred ECCCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCCCCCcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 9999998899
Q ss_pred ChhhhcCCCHHHHHHHHHhhcCCCCeEEEEeC-CChHHHHHHHHhhcCCCCCCCCCCCC------CCCccCCceEE-cCC
Q 010710 231 PESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTEP------KSVYIGGDYRQ-QAD 302 (503)
Q Consensus 231 ~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~~~~~l~~~~~~~~~------~~~~~~~~~~~-~~~ 302 (503)
+.+.|++++.++|++||+++|.|++++++++| ++++++.++++++|+.||....+... .+.+.+....+ ..+
T Consensus 164 ~~~~i~~~~~~~l~~f~~~~y~~~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (443)
T 1hr6_B 164 PIKNIKSITRTDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVPLGSPRGPLPVFCRGERFIKENT 243 (443)
T ss_dssp CHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCCCSSCCCTTSCCSSCCCCCCEEEEEECTT
T ss_pred CHHHHhhCCHHHHHHHHHhcCcCCCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCCCCCCeEEeccCC
Confidence 99999999999999999999999999999999 99999999999999999865432211 22233333333 345
Q ss_pred CCceEEEEEeeeCCCCCCCchhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeeccccCcceEEE
Q 010710 303 SPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGI 382 (503)
Q Consensus 303 ~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~~~~~gg~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~~~~~~f~i 382 (503)
.+++++.++|++++ +++++..++.|++.+|+++. ...|+|+|+.++||++||++.|++|+++++...+.+.|.|.+
T Consensus 244 ~~~~~v~~~~~~~~--~~~~~~~~l~vl~~iLg~~~--r~~~~g~~~~s~L~~~lre~~glay~~~~~~~~~~~~g~~~i 319 (443)
T 1hr6_B 244 LPTTHIAIALEGVS--WSAPDYFVALATQAIVGNWD--RAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYADSGLWGM 319 (443)
T ss_dssp CSEEEEEEEEECCC--TTCTTHHHHHHHHHHHCEEE--TTTBCSSSSCCHHHHHHHSTTCSCSEEEEEEEECSSCEEEEE
T ss_pred ccceEEEEEEecCC--CCCccHHHHHHHHHHhCCCc--ccCCCCCCcccHHHHHHHHHcCCeEEEEeeecCCCCceEEEE
Confidence 78999999999986 68899999999999998743 234567889999999999999999999998877777899999
Q ss_pred EEEeC--cchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhCCcCCHHHHHHH
Q 010710 383 YACTG--SDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERKSVDQFLSV 460 (503)
Q Consensus 383 ~~~~~--p~~~~~~~~~~~~~l~~~~~~g~i~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 460 (503)
++.++ |++..++++.+.+++.++.++| ++++||+++|+.++..+....+++..++..+.++++.+|.+.+.+++.+.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 398 (443)
T 1hr6_B 320 YIVTDSNEHNVRLIVNEILKEWKRIKSGK-ISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLSPEEVFEQ 398 (443)
T ss_dssp EEEEETTTCCHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHSSCCCHHHHHHH
T ss_pred EEEecCChhHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 99999 9999999999999999999876 99999999999999999999999999999888876557777667889999
Q ss_pred HccCCHHHHHHHHHHhhcC-CceEEEE--ccCCCCHHHHHhHhh
Q 010710 461 LEHITLDDITNIAQKIISS-PLTMASY--VINVPGYESVSSKFH 501 (503)
Q Consensus 461 i~~vT~~di~~~a~~~l~~-~~~~~~~--~~~~p~~~~~~~~~~ 501 (503)
|++||++||++++++|+.. +.+++++ ...+|.+++|.+++.
T Consensus 399 i~~vt~~dv~~~a~~~l~~~~~~~~v~g~~~~~~~~~~~~~~~~ 442 (443)
T 1hr6_B 399 VDKITKDDIIMWANYRLQNKPVSMVALGNTSTVPNVSYIEEKLN 442 (443)
T ss_dssp HHTCCHHHHHHHHHHHSSSCCEEEEEEECGGGCCCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHhccCCcEEEEECCcccCccHHHHHHHhc
Confidence 9999999999999999975 5556556 678999999988764
No 5
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=100.00 E-value=1.5e-55 Score=451.87 Aligned_cols=418 Identities=29% Similarity=0.465 Sum_probs=377.8
Q ss_pred CCCceEEEEcCCCcEEEEecCCCCeEEEEEEEeccccCCCCCCCcHHHHHHHHHcccCCCCCHHHHHHHHHHcCCeeeEe
Q 010710 72 EPGKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILAS 151 (503)
Q Consensus 72 ~~~~~~~~~L~NG~~v~~~~~~~~~~~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~ 151 (503)
..+.++.++|+||++|++.++..+.+++.+++++|+..+++...|++|+++||++.||++++..++.+.++..|++++++
T Consensus 20 ~~~~~~~~~L~nGl~v~~~~~~~~~~~~~~~~~~Gs~~e~~~~~g~a~lle~~~~~gt~~~~~~~~~~~l~~~G~~~na~ 99 (439)
T 1pp9_B 20 HPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVT 99 (439)
T ss_dssp -CCCCEEEECTTSCEEEEECCCCSEEEEEEEESCSGGGCCTTSTTHHHHHHHTTTSCBSSSCHHHHHHHHHHTTCEEEEE
T ss_pred cCCCceEEECCCCcEEEEEeCCCceEEEEEEEeccccCCCCCcCcHHHHHHHhhcCCCCcCCHHHHHHHHHHhCCeEEEE
Confidence 34688999999999999766577899999999999999999999999999999999999999999999999999999999
Q ss_pred eccceEEEEEecccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhHhhhCChHHHHHHHHHHHhcCCCCCCCCCCC
Q 010710 152 ASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAP 231 (503)
Q Consensus 152 ~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 231 (503)
++.+++.|++++++++++.+|+++.+++.+|.|++++|+++++.+.++++...++|..++.+.++..+|.+||+++..|+
T Consensus 100 t~~~~t~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~ 179 (439)
T 1pp9_B 100 STRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYCP 179 (439)
T ss_dssp ECSSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHBSSGGGSCSSCC
T ss_pred ecceEEEEEEEeehhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCCCCCCccCC
Confidence 99999999999999999999999999999999999999999999999999988999999999999999877899988999
Q ss_pred hhhhcCCCHHHHHHHHHhhcCCCCeEEEEeCCChHHHHHHHHhhcCCCCCCCCCCCCCCCccCCceEEcCCCCceEEEEE
Q 010710 232 ESALNRLDGTILEEIVAENFTAPRMVLAASGVDLDELLPIAEPLLSDLPRLPPPTEPKSVYIGGDYRQQADSPETHIALA 311 (503)
Q Consensus 232 ~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 311 (503)
.+.|++++.+++++||+++|.+++++++++|-+++++.++++++++ ||....+....+.+.++...+..+.+++++.++
T Consensus 180 ~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 258 (439)
T 1pp9_B 180 DYRIGKVTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVAEQFLN-IRGGLGLSGAKAKYHGGEIREQNGDSLVHAALV 258 (439)
T ss_dssp GGGTTTCCHHHHHHHHHHHCSGGGEEEEEESSCHHHHHHHHHHHCC-CCCCC-CCCCCCCBCCEEEEEECCCSEEEEEEE
T ss_pred HHHHhhcCHHHHHHHHHHhCCCCceEEEEeCCCHHHHHHHHHHHhC-CCCCCCCCCCCCCCcCCeEEecCCccceEEEEE
Confidence 9999999999999999999999999999999888999999999998 986543322222333444445567788999999
Q ss_pred eeeCCCCCCCchhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeeccccCcceEEEEEEeCcchH
Q 010710 312 FEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACTGSDFV 391 (503)
Q Consensus 312 ~~~~~~~~~~~~~~~~~vl~~lL~~~~~~~~gg~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~~~~~~f~i~~~~~p~~~ 391 (503)
|+.++ .++++..++.|++++|+++++|++|| ||+++||++||++.|++|+++++...+.+.|.|.+++.++|++.
T Consensus 259 ~~~~~--~~~~~~~~~~ll~~iLg~~~~~~~~~---g~~s~L~~~lRe~~gl~Y~~~~~~~~~~~~g~~~i~~~~~~~~~ 333 (439)
T 1pp9_B 259 AESAA--IGSAEANAFSVLQHVLGAGPHVKRGS---NATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAASA 333 (439)
T ss_dssp EECCC--TTSHHHHHHHHHHHHHCCSCSBTTCC---CTTCHHHHHHHHHCCSCEEEEEEEEEETTEEEEEEEEEEEGGGH
T ss_pred ecCCC--CCchHHHHHHHHHHHhCCCcccCCCC---CccCHHHHHHHHhcCCceEEEEeeccccccceEEEEEEeCHHHH
Confidence 99886 68899999999999999999999888 78899999999999999999998876677899999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhCCcCCHHHHHHHHccCCHHHHHH
Q 010710 392 SKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERKSVDQFLSVLEHITLDDITN 471 (503)
Q Consensus 392 ~~~~~~~~~~l~~~~~~g~i~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vT~~di~~ 471 (503)
.++++.+.+++.++.++| ++++||+++|+.++.++....+++..++..++..++.++.+.+.+++.+.|++||++||++
T Consensus 334 ~~~~~~~~~~l~~l~~~~-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~ 412 (439)
T 1pp9_B 334 GDVIKAAYNQVKTIAQGN-LSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVADADVIN 412 (439)
T ss_dssp HHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHH
Confidence 999999999999999877 9999999999999999999999999999999988776677777899999999999999999
Q ss_pred HHHHhhcCCceEEEE--ccCCCCHHHH
Q 010710 472 IAQKIISSPLTMASY--VINVPGYESV 496 (503)
Q Consensus 472 ~a~~~l~~~~~~~~~--~~~~p~~~~~ 496 (503)
++++|+..+.+++++ ...+|.++++
T Consensus 413 ~a~~~~~~~~~~~v~g~~~~~~~~~~~ 439 (439)
T 1pp9_B 413 AAKKFVSGRKSMAASGNLGHTPFIDEL 439 (439)
T ss_dssp HHHHHHHSCEEEEEEECGGGCCCGGGC
T ss_pred HHHHHhcCCceEEEECCcccCCccccC
Confidence 999999866666666 7788888753
No 6
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=100.00 E-value=3.7e-56 Score=457.49 Aligned_cols=421 Identities=28% Similarity=0.462 Sum_probs=378.4
Q ss_pred CceEEEEcCCCcEEEEecCCCCeEEEEEEEeccccCCCCCCCcHHHHHHHHHcccCCCCCHHHHHHHHHHcCCeeeEeec
Q 010710 74 GKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASAS 153 (503)
Q Consensus 74 ~~~~~~~L~NG~~v~~~~~~~~~~~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~ 153 (503)
+.++..+|+||++|++.+.+.+.+++.+++++|+.+|+++..|++|+++||+|+||.+++..++.+.++..|+.++++++
T Consensus 12 ~~~~~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~l~~~G~~~na~t~ 91 (446)
T 1pp9_A 12 PETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHLNAYST 91 (446)
T ss_dssp CCCEEEECTTCCEEEEEECSCSEEEEEEEESCSGGGCCTTTTTHHHHHHHHTTSCBSSSTTTHHHHHHHHTTCEEEEEEC
T ss_pred cCceEEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCEEEEEEc
Confidence 46789999999999987777789999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEecccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhHhhhCChHHHHHHHHHHHhc-CCCCCCCCCCCh
Q 010710 154 REQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLLAPE 232 (503)
Q Consensus 154 ~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~ 232 (503)
.+++.|++++++++++.+|+++.+++.+|.|++++|+++|..+.++++...++|...+.+.++..+| +|||+.+..|+.
T Consensus 92 ~d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 171 (446)
T 1pp9_A 92 REHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPS 171 (446)
T ss_dssp SSCEEEEEEEEGGGHHHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCH
T ss_pred CCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred hhhcCCCHHHHHHHHHhhcCCCCeEEEEeC-CChHHHHHHHHhhcCCCCCCCCCCC--C--CCCccCCceEE-cCCCCce
Q 010710 233 SALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTE--P--KSVYIGGDYRQ-QADSPET 306 (503)
Q Consensus 233 ~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~~~~~l~~~~~~~~--~--~~~~~~~~~~~-~~~~~~~ 306 (503)
+.|++++.++|++||+++|.|+|++++++| ++++++.++++++|+.|+....+.. . .+.+.+....+ ..+.+++
T Consensus 172 ~~l~~~~~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (446)
T 1pp9_A 172 ENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSPCRFTGSQICHREDGLPLA 251 (446)
T ss_dssp HHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCSCCCSSCCCCCCCCCCCCEEEEEEETTSSSE
T ss_pred HHHHhCCHHHHHHHHHhccCCCCEEEEEEcCCCHHHHHHHHHHHhccCCCCCCCCccccCCCCCCCCceEEEecCCccce
Confidence 999999999999999999999999999999 9999999999999999986543321 1 22233333332 3457899
Q ss_pred EEEEEeeeCCCCCCCchhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeeccccCcceEEEEEEe
Q 010710 307 HIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACT 386 (503)
Q Consensus 307 ~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~~~~~gg~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~~~~~~f~i~~~~ 386 (503)
++.++|++++ .++++..++.|++.+||++.+ +.| +|+|++++||++||+ .|++|+++++...+.+.|.|.+++.+
T Consensus 252 ~v~~~~~~~~--~~~~d~~al~vl~~iLg~~~~-~~~-~g~~~~srL~~~lr~-~glay~~~s~~~~~~~~g~~~i~~~~ 326 (446)
T 1pp9_A 252 HVAIAVEGPG--WAHPDNVALQVANAIIGHYDC-TYG-GGAHLSSPLASIAAT-NKLCQSFQTFNICYADTGLLGAHFVC 326 (446)
T ss_dssp EEEEEEEECC--TTCTHHHHHHHHHHHHCEEET-TCS-CGGGCSSHHHHHHHH-HTCCSEEEEEEEECSSCEEEEEEEEE
T ss_pred EEEEEEecCC--CCCccHHHHHHHHHHhCCCcc-cCC-CCCCCCCHHHHHHHh-cCCeEEEEEecccCCCCeEEEEEEEE
Confidence 9999999987 678899999999999997654 444 678899999999995 58999999887766778999999999
Q ss_pred CcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhCCcCCHHHHHHHHccCCH
Q 010710 387 GSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERKSVDQFLSVLEHITL 466 (503)
Q Consensus 387 ~p~~~~~~~~~~~~~l~~~~~~g~i~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vT~ 466 (503)
+|++..++++.+.+++.++.+ | ++++||+++|+.++.++....+++..++..++++++.+|.+.+.+++.+.|++||+
T Consensus 327 ~~~~~~~~~~~i~~~l~~l~~-~-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~ 404 (446)
T 1pp9_A 327 DHMSIDDMMFVLQGQWMRLCT-S-ATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDA 404 (446)
T ss_dssp CTTSHHHHHHHHHHHHHHHHH-H-CCHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHTSSCCCHHHHHHHHHTCCH
T ss_pred CHHHHHHHHHHHHHHHHHHhc-c-CCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHcCCH
Confidence 999999999999999999987 6 99999999999999999999999999998888877667877778889999999999
Q ss_pred HHHHHHHHHhhcC-CceEEEE--ccCCCCHHHHHhHhh
Q 010710 467 DDITNIAQKIISS-PLTMASY--VINVPGYESVSSKFH 501 (503)
Q Consensus 467 ~di~~~a~~~l~~-~~~~~~~--~~~~p~~~~~~~~~~ 501 (503)
+||++++++|+.. +.+++++ ...+|.++.+..++.
T Consensus 405 edv~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 442 (446)
T 1pp9_A 405 RVVREVCSKYFYDQCPAVAGFGPIEQLPDYNRIRSGMF 442 (446)
T ss_dssp HHHHHHHHHHTTTCCCEEEEEESCTTSCCHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCCcEEEEECCcccCcCHHHHHhhHH
Confidence 9999999999975 5666666 778999999988764
No 7
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=100.00 E-value=4.7e-54 Score=441.66 Aligned_cols=401 Identities=19% Similarity=0.255 Sum_probs=355.8
Q ss_pred CceEEEEcCCCcEEEEecCC-CCeEEEEEEEeccccCCCCCCCcHHHHHHHHHcccCCCCCHHHHHHHHHHcCCeeeEee
Q 010710 74 GKVKVTTLENGIRIASETSV-SPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASA 152 (503)
Q Consensus 74 ~~~~~~~L~NG~~v~~~~~~-~~~~~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~ 152 (503)
+.++.++|+||++|++.+++ .+.+.+.+++++|+..++++..|++|+++||+|+||++++..++.+.++..|+.+++++
T Consensus 5 ~~~~~~~L~NGl~v~~~~~~~~~~v~~~~~~~~Gs~~e~~~~~Glah~lehmlf~Gt~~~~~~~l~~~l~~~g~~~na~t 84 (445)
T 3ami_A 5 ASTFETTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGEFSKRVAAMGGRDNAFT 84 (445)
T ss_dssp GGEEEEECTTSCEEEEEECTTSSEEEEEEEESCCGGGCCTTCTTHHHHHHHHTTSCBSSSCTTHHHHHHHHTTCEEEEEE
T ss_pred cCcEEEECCCCCEEEEEECCCCCeEEEEEEEeeccCCCCCCCccHHHHHHHhhcCCCCCCCHHHHHHHHHHhCCcccccc
Confidence 47899999999999965544 68999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEEEEecccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhH-hhhCChHHHHHHHHHHHhc-CCCCCCCCCC
Q 010710 153 SREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELG-ELHNNPQGLLLEAIHSTGY-AGALGNPLLA 230 (503)
Q Consensus 153 ~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~-~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~ 230 (503)
+.+.+.|.+++++++++.+|+++.+++.+|.|++++|++++..+.+|++ ...++|...+.+.++..+| +|||+++..|
T Consensus 85 ~~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G 164 (445)
T 3ami_A 85 TRDYTAYYQQVPSSRLSDVMGLEADRMANLVVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIG 164 (445)
T ss_dssp CSSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSSGGGSCTTC
T ss_pred CCCeEEEEEECCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhccCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999 6789999999999999999 9999999999
Q ss_pred ChhhhcCCCHHHHHHHHHhhcCCCCeEEEEeC-CChHHHHHHHHhhcCCCCCCCCCCCC--C-CCccCC-ceEEcCCCCc
Q 010710 231 PESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTEP--K-SVYIGG-DYRQQADSPE 305 (503)
Q Consensus 231 ~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~~~~~l~~~~~~~~~--~-~~~~~~-~~~~~~~~~~ 305 (503)
+.+.|++++.+++++||+++|.|++++++|+| ++++++.++++++|++||....+... . +...+. ...+..+..+
T Consensus 165 ~~e~l~~it~~~l~~f~~~~y~p~n~~l~vvGd~d~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (445)
T 3ami_A 165 WMNDIQNMTAQDVRDWYKRWYGPNNATVVVVGDVEHEAVFRLAEQTYGKLARVEAPARKQQGEPQQAGVRRVTVKAPAEL 244 (445)
T ss_dssp CHHHHHHCCHHHHHHHHHHHCSGGGEEEEEEESCCHHHHHHHHHHTGGGSCCCCCCCCCCCCCCCCCSCEEEEEEEECSS
T ss_pred CHHHHhhCCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCceEEEEecCCCc
Confidence 99999999999999999999999999999999 99999999999999999865433221 1 122222 2334445788
Q ss_pred eEEEEEeeeCCC--CCCCchhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeecc-ccC-cceEE
Q 010710 306 THIALAFEVPGG--WLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSI-FNN-TGLFG 381 (503)
Q Consensus 306 ~~v~~~~~~~~~--~~~~~~~~~~~vl~~lL~~~~~~~~gg~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~-~~~-~~~f~ 381 (503)
+.+.++|+++.. +.+.++..++.+++.+|+++ +++||+++||++.|++|+++++... ..+ .+.|.
T Consensus 245 ~~v~l~~~~~~~~~~~~~~~~~~~~vl~~iLg~~-----------~~srL~~~lre~~gl~y~v~~~~~~~~~~~~g~~~ 313 (445)
T 3ami_A 245 PYLALAWHVPAIVDLDKSRDAYALEILAAVLDGY-----------DGARMTRQLVRGNKHAVSAGAGYDSLSRGQQGLFI 313 (445)
T ss_dssp CEEEEEEEECCCSSTTCCHHHHHHHHHHHHHHSS-----------TTCHHHHHTTTTSCCEEEEEEECCCCCSSCCEEEE
T ss_pred cEEEEEEEcCCcccccCChhHHHHHHHHHHHcCC-----------cchHHHHHHhhcCCcEEEEEeeccccccCCCCeEE
Confidence 999999998841 22378999999999999975 4499999999999999999998764 446 79999
Q ss_pred EEEEeCcch-HHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhCCcCCHHHHHHH
Q 010710 382 IYACTGSDF-VSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERKSVDQFLSV 460 (503)
Q Consensus 382 i~~~~~p~~-~~~~~~~~~~~l~~~~~~g~i~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 460 (503)
+++.+.|+. .+++++.+.+++.++.++| ++++||+++|+.++.++....+++..++..++.+++.++......++.+.
T Consensus 314 i~~~~~~~~~~~~~~~~i~~~l~~l~~~g-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 392 (445)
T 3ami_A 314 LEGVPSKGVTIAQLETDLRAQVRDIAAKG-VTEAELSRVKSQMVAGKVYEQDSLMGQATQIGGLEVLGLSWRDDDRFYQQ 392 (445)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHTTTCCTTHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 999999985 9999999999999999887 99999999999999999999999999999999887755555667899999
Q ss_pred HccCCHHHHHHHHHHhhcCCceEEEE
Q 010710 461 LEHITLDDITNIAQKIISSPLTMASY 486 (503)
Q Consensus 461 i~~vT~~di~~~a~~~l~~~~~~~~~ 486 (503)
|++||++||++++++||.++..++++
T Consensus 393 i~~vt~~dv~~~a~~~l~~~~~~~~~ 418 (445)
T 3ami_A 393 LRSVTAAEVKAAAARLLTDDTLTVAN 418 (445)
T ss_dssp HHTCCHHHHHHHHHTTSCSTTEEEEE
T ss_pred HHcCCHHHHHHHHHHHcCcCCeEEEE
Confidence 99999999999999999865544444
No 8
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=100.00 E-value=1.8e-53 Score=435.78 Aligned_cols=398 Identities=16% Similarity=0.179 Sum_probs=356.8
Q ss_pred CceEEEEcCCCcEEEEecCC-CCeEEEEEEEeccccCCCCCCCcHHHHHHHHHcccCCCCCHHHHHHHHHHcCCeeeEee
Q 010710 74 GKVKVTTLENGIRIASETSV-SPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASA 152 (503)
Q Consensus 74 ~~~~~~~L~NG~~v~~~~~~-~~~~~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~ 152 (503)
++++.++|+||++|++.+++ .+.+++.+++++|+..+ ++..|++|+++||+++||++++..++.+.++..|+++++++
T Consensus 12 ~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e-~~~~g~a~lle~ll~~gt~~~~~~~l~~~l~~~g~~~~a~t 90 (434)
T 3gwb_A 12 LNVQTWSTAEGAKVLFVEARELPMFDLRLIFAAGSSQD-GNAPGVALLTNAMLNEGVAGKDVGAIAQGFEGLGADFGNGA 90 (434)
T ss_dssp CCCEEEECTTCCEEEEEECCSSSEEEEEEEESCSGGGC-TTSTTHHHHHHHHGGGEETTEEHHHHHHHHHTTTCEEEEEE
T ss_pred CCCEEEEcCCCeEEEEEECCCCCEEEEEEEEecccccC-CcchhHHHHHHHHHhcCcccCCHHHHHHHHHHhCCEEEeee
Confidence 57899999999999976655 58999999999999999 78999999999999999999999999999999999999999
Q ss_pred ccceEEEEEecccCC--HHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhHhhhCChHHHHHHHHHHHhc-CCCCCCCCC
Q 010710 153 SREQMGYSFDALKTY--VPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLL 229 (503)
Q Consensus 153 ~~~~~~~~~~~~~~~--l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~ 229 (503)
+.+++.|++++++++ ++.+|+++.+++.+|.|++++|+++++.+.+++++..++|...+.+.++..+| ++||+.+..
T Consensus 91 ~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 170 (434)
T 3gwb_A 91 YKDMAVASLRSLSAVDKREPALKLFAEVVGKPTFPADSLARIKNQMLAGFEYQKQNPGKLASLELMKRLYGTHPYAHASD 170 (434)
T ss_dssp CSSCEEEEEEEECSHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSTTSSCTT
T ss_pred cCCeEEEEEEecCccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 999999999999998 99999999999999999999999999999999999999999999999999999 899999999
Q ss_pred CChhhhcCCCHHHHHHHHHhhcCCCCeEEEEeC-CChHHHHHHHHhhcCCCCCCCCCCCCC-C-CccCCceEEcCCCCce
Q 010710 230 APESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTEPK-S-VYIGGDYRQQADSPET 306 (503)
Q Consensus 230 ~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~~~~~l~~~~~~~~~~-~-~~~~~~~~~~~~~~~~ 306 (503)
|+.+.|++++.+++++||+++|.+++++++++| ++++++.++++++|+.||..+.+..+. + ...++...+..+..++
T Consensus 171 G~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (434)
T 3gwb_A 171 GDAKSIPPITLAQLKAFHAKAYAAGNVVIALVGDLSRSDAEAIAAQVSAALPKGPALAKIEQPAEPKASIGHIEFPSSQT 250 (434)
T ss_dssp CCTTTTTTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHHHHHHHSCCCCCCCCCCCCCCCCCEEEEEECCSSEE
T ss_pred CCHHHHHhCCHHHHHHHHHHhcCcCCeEEEEEcCCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEEeCCCCce
Confidence 999999999999999999999999999999999 999999999999999998764333221 1 2223344555667899
Q ss_pred EEEEEeeeCCCCCCCchhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeeccccCcceEEEEEEe
Q 010710 307 HIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACT 386 (503)
Q Consensus 307 ~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~~~~~gg~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~~~~~~f~i~~~~ 386 (503)
++.++|+.+. .++++..++.|++.+||++ |++++||++||++.|++|+++++...+.+.+.|.+++++
T Consensus 251 ~v~~~~~~~~--~~~~d~~~l~vl~~iLg~~----------~~~s~L~~~lRe~~gl~Y~v~~~~~~~~~~g~~~i~~~~ 318 (434)
T 3gwb_A 251 SLMLAQLGID--RDDPDYAAVSLGNQILGGG----------GFGTRLMSEVREKRGLTYGVYSGFTPMQARGPFMINLQT 318 (434)
T ss_dssp EEEEEEECCB--TTCTTHHHHHHHHHHHHSS----------SSCSHHHHHHTTTTCCCSCEEEEECCBSSCCEEEEEEEE
T ss_pred eEEecCcCCC--CCCcchHHHHHHHHHhCCC----------cccchhHHHHHhhcCCcceeeeecccCCCceeEEEEEec
Confidence 9999999886 6888999999999999964 355999999999999999999998877788999999999
Q ss_pred CcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhCCc-CCHHHHHHHHccCC
Q 010710 387 GSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGER-KSVDQFLSVLEHIT 465 (503)
Q Consensus 387 ~p~~~~~~~~~~~~~l~~~~~~g~i~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~i~~vT 465 (503)
+|++..++++.+.+++.++.++| ++++||+++|+.++.++....+++..++..++.... .+.+ ...+++.+.|++||
T Consensus 319 ~~~~~~~~~~~i~~~l~~l~~~~-~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~vt 396 (434)
T 3gwb_A 319 RAEMSEGTLKLVQDVFAEYLKNG-PTQKELDDAKRELAGSFPLSTASNADIVGQLGAMGF-YNLPLSYLEDFMRQSQELT 396 (434)
T ss_dssp EGGGHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHH-TTCCTTHHHHHHHHHHHCC
T ss_pred chhhHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHH-cCCCccHHHHHHHHHHhCC
Confidence 99999999999999999998877 999999999999999999999999999999988765 4544 45789999999999
Q ss_pred HHHHHHHHHHhhcCC-ceEEEE
Q 010710 466 LDDITNIAQKIISSP-LTMASY 486 (503)
Q Consensus 466 ~~di~~~a~~~l~~~-~~~~~~ 486 (503)
++||++++++||... .+++++
T Consensus 397 ~~dv~~~a~~~l~~~~~~~~vv 418 (434)
T 3gwb_A 397 VEQVKAAMNKHLNVDKMVIVSA 418 (434)
T ss_dssp HHHHHHHHHHHCCGGGCEEEEE
T ss_pred HHHHHHHHHHhcChhhEEEEEE
Confidence 999999999999854 455555
No 9
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=100.00 E-value=1.7e-52 Score=428.10 Aligned_cols=410 Identities=20% Similarity=0.317 Sum_probs=361.8
Q ss_pred EEEEcCCCcEEEEecCC-CCeEEEEEEEeccccCCCCCCCcHHHHHHHHHcccCCCCCHHHHHHHHHHcCCeeeEeeccc
Q 010710 77 KVTTLENGIRIASETSV-SPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASRE 155 (503)
Q Consensus 77 ~~~~L~NG~~v~~~~~~-~~~~~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~ 155 (503)
+.++|+||++|++.+++ .+.+.+.+++++|+..+++++.|++|+++||+++|+.+ +.++..|++++++++.+
T Consensus 2 ~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~gt~~-------~~~~~~G~~~na~t~~~ 74 (431)
T 3cx5_A 2 EVTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKENS-------AVAAKEGLALSSNISRD 74 (431)
T ss_dssp CCEEEESSSEEEEEECTTCSSEEEEEEESCCGGGSCTTTTTHHHHHHHHHTSHHHH-------HHHHHTTCEEEEEECSS
T ss_pred eEEECCCCCEEEEEECCCCCEEEEEEEEecCccCCCCCCcchHHHHHHHHhcCCCc-------ccHHHcCCeeeeeecCC
Confidence 46789999999976655 57999999999999999999999999999999998743 35788999999999999
Q ss_pred eEEEEEecccCCHHHHHHHHHHhhcCCC---CChHHHHHHHHHHHHHhHhhhCCh-HHHHHHHHHHHhc-CCCCCCCCCC
Q 010710 156 QMGYSFDALKTYVPEMVELLVDCVRNPV---FLDWEVNEELRKLKSELGELHNNP-QGLLLEAIHSTGY-AGALGNPLLA 230 (503)
Q Consensus 156 ~~~~~~~~~~~~l~~~l~ll~~~~~~p~---f~~~~~~~~k~~~~~e~~~~~~~p-~~~~~~~~~~~~~-~~~~~~~~~~ 230 (503)
++.|++++++++++.+|+++.+++.+|. |++++|+++++.+.++++...++| ...+.+.++..+| ++|++.+..|
T Consensus 75 ~t~~~~~~~~~~l~~~l~ll~~~~~~p~~~~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g 154 (431)
T 3cx5_A 75 FQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATKKSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRG 154 (431)
T ss_dssp CEEEEEEECSTTHHHHHHHHHHHHHTCSTTTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTTSGGGSCTTC
T ss_pred eEEEEEEechhhHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHhcCCCCCCCCCCC
Confidence 9999999999999999999999999999 999999999999999999888999 9999999999999 8999999899
Q ss_pred ChhhhcCCCHHHHHHHHHhhcCCCCeEEEEeC-CChHHHHHHHHhhcCCCCCCCCCCCCC-CCccCCceEE-cCCCCceE
Q 010710 231 PESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTEPK-SVYIGGDYRQ-QADSPETH 307 (503)
Q Consensus 231 ~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~~~~~l~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~ 307 (503)
+.+.|++++.++|++||+++|.+++++++++| +++++++++++++|++||....+.... +.+.+....+ ..+.++++
T Consensus 155 ~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (431)
T 3cx5_A 155 TLESLENLVVADLESFANNHFLNSNAVVVGTGNIKHEDLVNSIESKNLSLQTGTKPVLKKKAAFLGSEVRLRDDTLPKAW 234 (431)
T ss_dssp CHHHHHTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHTTSCCCSSCSCCCCCCCCCCCCCEEEEEECTTSSSEE
T ss_pred CHHHHhhCCHHHHHHHHHhcCCCCcEEEEEEcCCCHHHHHHHHHHHhCCCCCCCCCCCCCCCcccCceEEEcCCCCCceE
Confidence 99999999999999999999999999999999 999999999999888898654332211 2223333333 33468999
Q ss_pred EEEEeeeCCCCCCCchhHHHHHHHHhcCCCCCCCCCCCCCC-cccHHHHHHHhhcCCeEEEEeeeccccCcceEEEEEEe
Q 010710 308 IALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKG-MHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACT 386 (503)
Q Consensus 308 v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~~~~~gg~g~g-~~s~L~~~lR~~~~~~Y~~~a~~~~~~~~~~f~i~~~~ 386 (503)
+.++|+.++ .++++..++.+++.+|+++ ++||||+| ++++||+.||+ .|++|+++++...+.+.+.|.+++.+
T Consensus 235 v~~~~~~~~--~~~~~~~~~~vl~~iL~~~---~~~~~~~~~~~s~L~~~lRe-~gl~y~v~~~~~~~~~~g~~~i~~~~ 308 (431)
T 3cx5_A 235 ISLAVEGEP--VNSPNYFVAKLAAQIFGSY---NAFEPASRLQGIKLLDNIQE-YQLCDNFNHFSLSYKDSGLWGFSTAT 308 (431)
T ss_dssp EEEEEECCC--TTCTTHHHHHHHHHHHCEE---ETTCTTGGGSSCTHHHHHHT-TTCCSEEEEEEEECSSCEEEEEEEEE
T ss_pred EEEEeecCC--CCCccHHHHHHHHHHcCCC---ccCCCCccccccHHHHHHHh-cCceeeEeEeecccCCCceEEEEEee
Confidence 999999886 6889999999999999975 45889985 78999999996 59999999987766678999999999
Q ss_pred Cc-chHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHH--ccCChHHHHHHHHHHHHHhCCcCCHHHHHHHHcc
Q 010710 387 GS-DFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLM--NLESRVIVSEDIGRQILTYGERKSVDQFLSVLEH 463 (503)
Q Consensus 387 ~p-~~~~~~~~~~~~~l~~~~~~g~i~~~el~~ak~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~ 463 (503)
+| ++..++++.+.+++.++.+ | ++++||+++|+.++.++.. ..+++..++..++..++.+|.+.+.+++.+.|++
T Consensus 309 ~~~~~~~~~~~~~~~~l~~l~~-~-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~ 386 (431)
T 3cx5_A 309 RNVTMIDDLIHFTLKQWNRLTI-S-VTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLSLGEAFKKIDA 386 (431)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHH-T-CCHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSSCCCHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHhc-C-CCHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhc
Confidence 99 9999999999999999988 7 9999999999999999999 9999999999998876656776668889999999
Q ss_pred CCHHHHHHHHHHhhcC-CceEEEE--ccCCCCHHHHHhHhh
Q 010710 464 ITLDDITNIAQKIISS-PLTMASY--VINVPGYESVSSKFH 501 (503)
Q Consensus 464 vT~~di~~~a~~~l~~-~~~~~~~--~~~~p~~~~~~~~~~ 501 (503)
||++||++++++|+.. +.+++++ ...+|.+++|.+++.
T Consensus 387 vt~~dv~~~a~~~l~~~~~~~~v~g~~~~~~~~~~~~~~~~ 427 (431)
T 3cx5_A 387 ITVKDVKAWAGKRLWDQDIAIAGTGQIEGLLDYMRIRSDMS 427 (431)
T ss_dssp CCHHHHHHHHHHHTTTCCCEEEEEESCTTSCCHHHHHHTTS
T ss_pred CCHHHHHHHHHHHcccCCcEEEEEcchhcccCHHHHHhHHH
Confidence 9999999999999975 4555555 678999999988764
No 10
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=100.00 E-value=2.4e-52 Score=426.27 Aligned_cols=402 Identities=18% Similarity=0.224 Sum_probs=355.4
Q ss_pred CceEEEEcCCCcEEEEecCC-CCeEEEEEEEeccccCCCCCCCcHHHHHHHHHcccCC----CCCHHHHHHHHHHcCCee
Q 010710 74 GKVKVTTLENGIRIASETSV-SPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTK----NRSHLRIVREVEAIGGSI 148 (503)
Q Consensus 74 ~~~~~~~L~NG~~v~~~~~~-~~~~~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~gt~----~~s~~~l~~~l~~~g~~~ 148 (503)
++++.++|+||++|++.+++ .+.+++.+++++|+..+++++.|++|+++||+++||+ +++..++.+.++..|+.+
T Consensus 2 ~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~Gt~~~~~~~~~~~~~~~l~~~G~~~ 81 (424)
T 3amj_B 2 IKIEHWTAPSGAQVYYVENRTLPMLDVQVDFDAGSAREPADQVGVASMTASLMDAGTGSGKSALDENAIADRLADIGARL 81 (424)
T ss_dssp CCCEEEECTTSCEEEEEECCSSSEEEEEEEESCSGGGSCTTSTTHHHHHHHTGGGEECSTTSCEEHHHHHHHHHHTTCEE
T ss_pred CccEEEECCCCcEEEEEECCCCCEEEEEEEEecCCccCCCccchHHHHHHHHHHhccCCCccCCCHHHHHHHHHHhCCEE
Confidence 46789999999999966555 6899999999999999999999999999999999999 999999999999999999
Q ss_pred eEeeccceEEEEEecccCCH--HHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhHhhhCChHHHHHHHHHHHhc-CCCCC
Q 010710 149 LASASREQMGYSFDALKTYV--PEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALG 225 (503)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~l--~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~~~~~~~-~~~~~ 225 (503)
+++++.+++.|+++++++++ +.+|+++.+++.+|.|++++|+++++.+.+++++..++|...+.+.+...+| ++||+
T Consensus 82 ~a~t~~~~t~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~e~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~ 161 (424)
T 3amj_B 82 GGGAEADRASFSLRVLSSPAERNSALTILRDILAHPTFPAPVLERERARAIAGLREAQTQPGSILGRRFTELAYGKHPYG 161 (424)
T ss_dssp EEEECSSCEEEEEEEESSHHHHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTSGGG
T ss_pred EeecCCCeEEEEEEEeccccChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHhcCCCCCCC
Confidence 99999999999999999998 9999999999999999999999999999999999889999999999999999 89999
Q ss_pred CCCCCChhhhcCCCHHHHHHHHHhhcCCCCeEEEEeC-CChHHHHHHHHhhcCCCCCCCCCCC-CCCC-ccCCceEEcCC
Q 010710 226 NPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTE-PKSV-YIGGDYRQQAD 302 (503)
Q Consensus 226 ~~~~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~~~~~l~~~~~~~~-~~~~-~~~~~~~~~~~ 302 (503)
.+. +.+.|++++.+++++||+++|.+++++++++| ++++++.++++++|+.||....+.. +.+. ..+....+..+
T Consensus 162 ~~~--~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~Gd~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (424)
T 3amj_B 162 HVS--SVATLQKISRDQLVSFHRTHYVARTAVVTLVGDITRAEAETIAQQLTADLPAGATLPPLPDPAMPRATVERIANP 239 (424)
T ss_dssp CCC--CHHHHHHCCHHHHHHHHHHHSCTTSCEEEEEESCCHHHHHHHHHHTTTTSCCCCCCCCCCCCCCCCCEEEEEECS
T ss_pred CCC--CHHHHHhCCHHHHHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEeeCC
Confidence 876 88999999999999999999999999999999 9999999999999999986543322 1111 22233444556
Q ss_pred CCceEEEEEeeeCCCCCCCchhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeeccccCcceEEE
Q 010710 303 SPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGI 382 (503)
Q Consensus 303 ~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~~~~~gg~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~~~~~~f~i 382 (503)
.+++.+.++|+++. .+.++..++.+++.+|+++ |++++||++||++.|++|+++++...+.+.+.|.+
T Consensus 240 ~~~~~v~~~~~~~~--~~~~~~~~~~vl~~iLg~~----------~~~srL~~~lR~~~gl~y~v~~~~~~~~~~g~~~i 307 (424)
T 3amj_B 240 ATQAHIAIGMPTLK--RGDPDFFPLVVGNYALGGG----------GFESRLMKEIRDKRGLSYGAYSYFSPQKSMGLFQI 307 (424)
T ss_dssp SSEEEEEEEEEEEB--TTCTTHHHHHHHHHHHTTS----------GGGSHHHHHHTTTTCCEEEEEEEECCBSSCEEEEE
T ss_pred CCccEEEeeccCCC--CCCcchHHHHHHHHHhCCC----------CccchhHHHHHHhCCeEEEeeeeeccCCCceeEEE
Confidence 78999999999886 6888999999999999964 25699999999999999999999877777899999
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhCCc-CCHHHHHHHH
Q 010710 383 YACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGER-KSVDQFLSVL 461 (503)
Q Consensus 383 ~~~~~p~~~~~~~~~~~~~l~~~~~~g~i~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~i 461 (503)
+++++|++..++++.+.+++.++.++| ++++||+++|+.++.++....+++..++..++.... +|.+ ...+++.+.|
T Consensus 308 ~~~~~~~~~~~~~~~i~~~l~~l~~~~-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i 385 (424)
T 3amj_B 308 GFETRAEKADEAVQVANDTLDAFLREG-PTDAELQAAKDNLINGFALRLDSNAKILGQVAVIGY-YGLPLDYLDHYTERV 385 (424)
T ss_dssp EEEEESTTHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHTSGGGGSSHHHHHHHHHHHHH-TTCCTTTTTSHHHHH
T ss_pred EEEeCcccHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHhhhhHhcCCHHHHHHHHHHHHH-cCCChhHHHHHHHHH
Confidence 999999999999999999999998877 999999999999999999999999999998887655 5544 4467889999
Q ss_pred ccCCHHHHHHHHHHhhcCCceEEEE-ccCCC
Q 010710 462 EHITLDDITNIAQKIISSPLTMASY-VINVP 491 (503)
Q Consensus 462 ~~vT~~di~~~a~~~l~~~~~~~~~-~~~~p 491 (503)
++||++||++++++|+.+...++++ .+..|
T Consensus 386 ~~vt~~dv~~~a~~~l~~~~~~~~~~~~~~~ 416 (424)
T 3amj_B 386 QAVTVEQVREAFARHVKRENLITVVVGGKAS 416 (424)
T ss_dssp HTCCHHHHHHHHHHHCCGGGCEEEEEECC--
T ss_pred HcCCHHHHHHHHHHhcCccceEEEEECChhh
Confidence 9999999999999999865444444 44444
No 11
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=100.00 E-value=1e-47 Score=391.85 Aligned_cols=381 Identities=15% Similarity=0.194 Sum_probs=335.7
Q ss_pred EEcCCCcEEEEecCC-CCeEEEEEEEeccccCCCCCCCcHHHHHHHHHcccCCCC-CHHHHHHHHHHc-CCeeeEeeccc
Q 010710 79 TTLENGIRIASETSV-SPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNR-SHLRIVREVEAI-GGSILASASRE 155 (503)
Q Consensus 79 ~~L~NG~~v~~~~~~-~~~~~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~gt~~~-s~~~l~~~l~~~-g~~~~~~~~~~ 155 (503)
++|+||++|++.+++ .+.+.+.+++++|+..++ .|++|+++||++.||.++ +..++.+.++.. |+.++++++.+
T Consensus 6 ~~L~nG~~v~~~~~~~~~~~~~~~~~~~g~~~e~---~g~a~ll~~~l~~gt~~~~~~~~~~~~l~~~~G~~~~a~t~~~ 82 (425)
T 3d3y_A 6 VQLVKGVNLHVIPTEKYKTVRLLVRFNTRLNHET---ITKRTLLSSLMETNSLNYPNQVKLSERLAELYGASFGIGVSKK 82 (425)
T ss_dssp EEEETTEEEEEEECSSCSEEEEEEEEEEECCTTT---HHHHHHHHHHHHHCCSSSCSHHHHHHHHHHTTSCEEEEEEEEE
T ss_pred eeccCCcEEEEEecCccceEEEEEEEeCCCCccc---hhHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhCceEeeeeeec
Confidence 889999999976664 689999999999997654 699999999999999998 889999999998 99999999988
Q ss_pred e----EEEEEecccC-------CHHHHHHHHHHhhcCCC-----CChHHHHHHHHHHHHHhHhhhCChHHHHHHHHHHHh
Q 010710 156 Q----MGYSFDALKT-------YVPEMVELLVDCVRNPV-----FLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTG 219 (503)
Q Consensus 156 ~----~~~~~~~~~~-------~l~~~l~ll~~~~~~p~-----f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~~~~~~ 219 (503)
+ +.|+++++++ +++.+|+++.+++.+|. |++++|+++++.+.+++++..++|...+.+.++..+
T Consensus 83 ~t~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~ 162 (425)
T 3d3y_A 83 GNQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVEDKQTYASLALQSVY 162 (425)
T ss_dssp TTEEEEEEEEEEECGGGCSSCCHHHHHHHHHHHHHHSCSEETTEECHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred CceEEEEEEEEecChhhccchhHHHHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Confidence 7 6899999887 69999999999999999 999999999999999999988999999999999999
Q ss_pred c--CCCCCCCCCCChhhhcCCCHHHHHHHHHhhcCCCCeEEEEeC-CChHHHHHHHHhhcCCCCCCCCCCCC-C--CCcc
Q 010710 220 Y--AGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTEP-K--SVYI 293 (503)
Q Consensus 220 ~--~~~~~~~~~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~~~~~l~~~~~~~~~-~--~~~~ 293 (503)
| +||++.+..|+.+.|++++.+++++||+++|.+++++++|+| ++++++.+++ ++|+ ||....+... . .+..
T Consensus 163 ~~~~~~~~~~~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~ 240 (425)
T 3d3y_A 163 FNQSEDQKIPSFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLF-KQLP-FTPREEGKAAIFYNQPIR 240 (425)
T ss_dssp TTTCTTTTSCTTCCHHHHHHCCHHHHHHHHHHHHHHSEEEEEEEESCCHHHHHHHH-HTSC-CCCCCCCCCCSCCCCCCC
T ss_pred ccCCCCccCCCCCCHHHHHhCCHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHH-HhCC-CCccccccccccccccCC
Confidence 9 689999889999999999999999999999999999999999 9999999999 9999 9865432211 1 1111
Q ss_pred C-Cce-EEcCCCCceEEEEEeeeCCCCCCCchhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeee
Q 010710 294 G-GDY-RQQADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFN 371 (503)
Q Consensus 294 ~-~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~~~~~gg~g~g~~s~L~~~lR~~~~~~Y~~~a~~ 371 (503)
. ... ....+.+++++.++|+.+. ..++++..++.|++++|||+ ++++||++||++.|++|++++..
T Consensus 241 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~vl~~iLg~~-----------~~s~L~~~lRe~~glaY~v~~~~ 308 (425)
T 3d3y_A 241 NVIEERTEREVLAQSKLNLAYNTDI-YYGDSYYFALQVFNGIFGGF-----------PHSKLFMNVREKEHLAYYASSSI 308 (425)
T ss_dssp SSCEEEEEEEECSSEEEEEEEECCC-CTTSTTHHHHHHHHHHHTTS-----------TTSHHHHHTTTTSCCCSEEEEEE
T ss_pred CcceeEEecCCccccEEEEEeecCC-CCCCchHHHHHHHHHHhCCC-----------hhhHHHHHHHHhcCeEEEEeccc
Confidence 1 112 2334678999999999862 15788999999999999975 34999999999999999999886
Q ss_pred ccccCcceEEEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhCCc
Q 010710 372 SIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGER 451 (503)
Q Consensus 372 ~~~~~~~~f~i~~~~~p~~~~~~~~~~~~~l~~~~~~g~i~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 451 (503)
.. ..|.|.+++.++|++..++++.+.+++.++.++| ++++||+++|+.++.++....+++..++..++..++.+|.+
T Consensus 309 ~~--~~g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 385 (425)
T 3d3y_A 309 DT--FRGFMTVQTGIDGKNRNQVLRLISTELENIRLGK-IRELEIEQTKAMLKNQYILALDNAGAWLEKEYLNELMPQTM 385 (425)
T ss_dssp ET--TTTEEEEEEEECGGGHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHSTTSC
T ss_pred cc--cCceEEEEEecCHhhHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhHHhcccCHHHHHHHHHHHHhhcCCC
Confidence 54 3788999999999999999999999999999877 99999999999999999999999999999998887753666
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHhhcC
Q 010710 452 KSVDQFLSVLEHITLDDITNIAQKIISS 479 (503)
Q Consensus 452 ~~~~~~~~~i~~vT~~di~~~a~~~l~~ 479 (503)
.+.+++.+.|++||++||++++++|+..
T Consensus 386 ~~~~~~~~~i~~vt~edv~~~a~~~~~~ 413 (425)
T 3d3y_A 386 LTAEEWIARINAVTIPEIQEVAKRLELQ 413 (425)
T ss_dssp CCHHHHHHHHHHCCHHHHHHHHHHCEEE
T ss_pred CCHHHHHHHHHhCCHHHHHHHHHhccCc
Confidence 6688999999999999999999998743
No 12
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=100.00 E-value=3.7e-46 Score=386.49 Aligned_cols=402 Identities=14% Similarity=0.108 Sum_probs=324.6
Q ss_pred CceEEEEcCCCcEEEEecC---CCCeEEEEEEEeccccCCCCCCCcHHHHHHHHHcccCCCCCHHHHHHHHH----HcCC
Q 010710 74 GKVKVTTLENGIRIASETS---VSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVE----AIGG 146 (503)
Q Consensus 74 ~~~~~~~L~NG~~v~~~~~---~~~~~~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~gt~~~s~~~l~~~l~----~~g~ 146 (503)
+.++.++|+||++|++..+ +.+.+++.+++++|+.+|++++.|++|+++||+|+||.+++..++.+.++ ..|+
T Consensus 24 p~~~~~~L~NGl~v~~~~~~~~~~~~v~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~~~~~~~~~G~ 103 (492)
T 3go9_A 24 PAWQQGKLDNGFSWQLLATPQRPSDRIELRLIVNTGSLSENTQEVGFAHLLPRLALMSSASFTPAQLQSLWQQGIDNERP 103 (492)
T ss_dssp TTEEEEECTTSCEEEEEECTTSTTSCEEEEEEESCCGGGCCGGGTTHHHHHHHHHHHCCTTCCHHHHHHHHHTCSCSSSC
T ss_pred CCeEEEECCCCCEEEEEECCCCCCCeEEEEEEEecccCCCCCCCcCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcCC
Confidence 4689999999999995432 35799999999999999999999999999999999999999999998766 4789
Q ss_pred eeeEeeccceEEEEEeccc---CCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhHhhhCChHHHHHHHHHHHhc-CC
Q 010710 147 SILASASREQMGYSFDALK---TYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AG 222 (503)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~---~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~~~~~~~-~~ 222 (503)
.+|++++.+++.|.+++++ ++++.+|+++.+++.+|.|++++|+++|..+.++++....+|....+ ...++ .+
T Consensus 104 ~~na~t~~d~t~y~~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 180 (492)
T 3go9_A 104 LPPAITSYDFTLYSLSLPNNRPDLLKDALAWLSDTAGNLAVSEQTVNAALNTATDPIATFPQNIQEPWW---RYRLKGSS 180 (492)
T ss_dssp CCSEEECSSCEEEEEEECTTCHHHHHHHHHHHHHHHHCCCCSHHHHHHHHTCSSCCEEESSSCTTCHHH---HHHTTTST
T ss_pred CcceEeCCCeEEEEEECCCCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccchhhHHH---HHHhccCC
Confidence 9999999999999999998 67999999999999999999999999998777777766677765433 23345 55
Q ss_pred CCCCCCCCChhhhcCCCHHHHHHHHHhhcCCCCeEEEEeC-CChHHHHHHHHhhcCCCCCCCCCCC--C-CCCccCC-ce
Q 010710 223 ALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTE--P-KSVYIGG-DY 297 (503)
Q Consensus 223 ~~~~~~~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~~~~~l~~~~~~~~--~-~~~~~~~-~~ 297 (503)
+++++..+ +.+++++.++|++||++||.|+|++++++| ++++++.++++++|++||....... + .++..+. ..
T Consensus 181 ~~~~~~~~--~~i~~it~~dL~~fy~~~Y~p~n~~l~vvGdvd~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (492)
T 3go9_A 181 LIGHDPGQ--PVTQPVDVEKLKQFYQQWYTPDAMTLYVVGNVDSRSIAAQISKAFSELKGKRTAPAAVATLAPLPPEPVS 258 (492)
T ss_dssp TTTCCTTC--CCCSSCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCSSCCCCCCCCCCCSSCEE
T ss_pred cccCCCch--hhhhcCCHHHHHHHHHHhcCcCceEEEEEcCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCceE
Confidence 66666533 578999999999999999999999999999 9999999999999999987643221 1 1122222 33
Q ss_pred EEcCCCCceEEEEEeeeCCCCCCCchhHH------HHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHh--hcCCeEEEEe
Q 010710 298 RQQADSPETHIALAFEVPGGWLKDKEAII------LTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLN--EYQQIQSFSA 369 (503)
Q Consensus 298 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------~~vl~~lL~~~~~~~~gg~g~g~~s~L~~~lR~--~~~~~Y~~~a 369 (503)
.+..+..++++.++|..+. ..+++..+ ..+++.+|+ ++|+.+||+ +.+++|++++
T Consensus 259 ~~~~~~~q~~v~l~~~~~~--~~~~d~~~l~~~~~~~v~~~iLg---------------~~L~~~lre~~~~gl~y~~~s 321 (492)
T 3go9_A 259 LMNEQAAQDTLSLMWDTPW--HPIQDSMALSRYWRSDLAREALF---------------WHIKQVLEKNNQKNLKLGFDC 321 (492)
T ss_dssp EEESSCSSEEEEEEEEEEC--CCCCSHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHSCCTTCEEEEEE
T ss_pred EEcCCCCCcEEEEEecCCC--CCcccHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHhhccccccccCc
Confidence 3456678999999999986 45555544 489999999 899999999 8999999999
Q ss_pred eeccccCcceEEEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHccC-----ChHHHHHHHHHH
Q 010710 370 FNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLE-----SRVIVSEDIGRQ 444 (503)
Q Consensus 370 ~~~~~~~~~~f~i~~~~~p~~~~~~~~~~~~~l~~~~~~g~i~~~el~~ak~~~~~~~~~~~~-----~~~~~~~~~~~~ 444 (503)
+.....+.+. +++++.+++.+++++.+.+++.++.++| +|++||+++|+.++.++...++ ++...++.+.+.
T Consensus 322 ~~~~~~~~~~--~~i~~~~~~~~~a~~~i~~el~~l~~~g-~te~EL~~aK~~~~~~l~~~~~~~~~~~~~~~a~~~~~~ 398 (492)
T 3go9_A 322 RVQYQRAQCA--IHLNTPVENLTANMTFVARELAALRANG-LSQAEFDALMTQKNDQLSKLFATYARTDTDILMSQRLRS 398 (492)
T ss_dssp EEETTEEEEE--EEEEECGGGHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHTHHHHHHTCCHHHHHHHHHHH
T ss_pred hhhhhhcceE--EEEEcCcccHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 8765544444 4556689999999999999999999887 9999999999999999887755 356677777777
Q ss_pred HHHhCCcCCHHH----HHHHHccCCHHHHHHHHHHhhcCCceEEEE-ccCCC--CHHHHHhHh
Q 010710 445 ILTYGERKSVDQ----FLSVLEHITLDDITNIAQKIISSPLTMASY-VINVP--GYESVSSKF 500 (503)
Q Consensus 445 ~~~~g~~~~~~~----~~~~i~~vT~~di~~~a~~~l~~~~~~~~~-~~~~p--~~~~~~~~~ 500 (503)
+.........++ +.+.|++||++||++++++|+.++..++++ -..-+ ..+++.+.+
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~i~~vT~edV~~~a~~~l~~~~~~vvvg~~~~~e~~~~~l~~~~ 461 (492)
T 3go9_A 399 QQSGVVDIAPEQYQKLRQAFLSGLTLAELNRELKQQLSQDTTLVLMQPKGEPEVNVKALQEIY 461 (492)
T ss_dssp HHHTCCCBCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCEEEEEEETTSCCCCHHHHHHHH
T ss_pred HhcCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhCCCCeEEEEcCCCCCCccHHHHHHHH
Confidence 664443333333 446699999999999999999987777777 32222 355555544
No 13
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=4.2e-45 Score=408.66 Aligned_cols=398 Identities=13% Similarity=0.116 Sum_probs=338.4
Q ss_pred CceEEEEcCCCcEEEEecCC-CCeEEEEEEEeccccCCCCCCCcHHHHHHHHHcccCCCCC-HHHHHHHHHHcCCeeeEe
Q 010710 74 GKVKVTTLENGIRIASETSV-SPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRS-HLRIVREVEAIGGSILAS 151 (503)
Q Consensus 74 ~~~~~~~L~NG~~v~~~~~~-~~~~~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~gt~~~s-~~~l~~~l~~~g~~~~~~ 151 (503)
..++..+|+||++|++.+++ .+.+.+.+++++|+.+|+++..|++|++|||+|+||.+++ ..++.++++..|+.+|++
T Consensus 19 ~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~e~~~~~GlAH~lEHmlf~Gt~~~p~~~~~~~~l~~~Gg~~NA~ 98 (939)
T 1q2l_A 19 RQYQAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHNAS 98 (939)
T ss_dssp CEEEEEEETTSCEEEEEECTTCSSEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSCBSSSCSTTHHHHHHHTTTCEEEEE
T ss_pred cceEEEEecCCCEEEEEECCCCCceEEEEEeCccCCCCCCCCCchHHHHHHHHccCCCCCCCcchHHHHHHHcCCcceEE
Confidence 46889999999999965554 6799999999999999999999999999999999999987 479999999999999999
Q ss_pred eccceEEEEEecccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhHhhhCChHHHHHHHHHHHhc-CCCCCCCCCC
Q 010710 152 ASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLLA 230 (503)
Q Consensus 152 ~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~ 230 (503)
|+.+++.|.+++++++++.+|+++.+++.+|.|++++|++++..+.+|++...++|..++.+.+...+| +|||+++..|
T Consensus 99 T~~d~T~y~~~~~~~~l~~~L~~l~d~~~~p~f~~~~~~~Er~~v~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G 178 (939)
T 1q2l_A 99 TAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGG 178 (939)
T ss_dssp ECSSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCSTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSSCTTSGGGSCCSC
T ss_pred ECCCcEEEEEEeCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred ChhhhcC----CCHHHHHHHHHhhcCCCCeEEEEeC-CChHHHHHHHHhhcCCCCCCCCCCCC--CCCccC---C-ceEE
Q 010710 231 PESALNR----LDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTEP--KSVYIG---G-DYRQ 299 (503)
Q Consensus 231 ~~~~l~~----l~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~~~~~l~~~~~~~~~--~~~~~~---~-~~~~ 299 (503)
+.+.|++ ++.++|++||++||.|++|+++|+| ++++++.++++++|++||+...+... .+.+.. + ....
T Consensus 179 ~~~~l~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (939)
T 1q2l_A 179 NLETLSDKPGNPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKPEITVPVVTDAQKGIIIHY 258 (939)
T ss_dssp CHHHHSCBTTBCHHHHHHHHHHHHCCTTTCEEEEEESSCHHHHHHHHHHTGGGSCCCCCCCCCCCSCSCCGGGSSEEEEE
T ss_pred CHHHHhcCCCchHHHHHHHHHHhccCHhheEEEEEcCCCHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCHHHcCEEEEE
Confidence 9999999 9999999999999999999999999 99999999999999999875433221 122221 1 2223
Q ss_pred cCCCCceEEEEEeeeCCCCCCCchhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeee--ccccCc
Q 010710 300 QADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFN--SIFNNT 377 (503)
Q Consensus 300 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~~~~~gg~g~g~~s~L~~~lR~~~~~~Y~~~a~~--~~~~~~ 377 (503)
.++.+++.+.++|+.|. ..+..+..++.+++.+||++++ ++|+..||+ .|++|+++++. ....+.
T Consensus 259 ~~~~~~~~l~i~~~~~~-~~~~~~~~~~~~l~~lLg~~~~-----------s~L~~~L~~-~gl~~~~~a~~~~~~~~~~ 325 (939)
T 1q2l_A 259 VPALPRKVLRVEFRIDN-NSAKFRSKTDELITYLIGNRSP-----------GTLSDWLQK-QGLVEGISANSDPIVNGNS 325 (939)
T ss_dssp CCSSCCCEEEEEEEEEC-CGGGGGGCHHHHHHHHHHCCCT-----------TSHHHHHHH-TTCEEEEEEEEESSTTSSE
T ss_pred EeCCCCcEEEEEEEcCC-hHHhhhhCHHHHHHHHhcCCCC-----------CcHHHHHHH-cCCchheeeccccccCCCc
Confidence 34567899999999996 2233366788999999997644 899999995 69999999875 234567
Q ss_pred ceEEEEEEeCc---chHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHHhCCcCC
Q 010710 378 GLFGIYACTGS---DFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNL-ESRVIVSEDIGRQILTYGERKS 453 (503)
Q Consensus 378 ~~f~i~~~~~p---~~~~~~~~~~~~~l~~~~~~g~i~~~el~~ak~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~ 453 (503)
+.|.+++.+.+ ++.+++++.+.+++..+.+.| ++++||+++|+.+...+.... +++...+..++..++ +.....
T Consensus 326 g~f~i~~~~~~~~~~~~~~~~~~i~~~l~~l~~~g-~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~ 403 (939)
T 1q2l_A 326 GVLAISASLTDKGLANRDQVVAAIFSYLNLLREKG-IDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTMI-RVPVEH 403 (939)
T ss_dssp EEEEEEEEECHHHHHTHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHT-TSCGGG
T ss_pred eEEEEEEEEChhhhhhHHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHhh-cCCHHH
Confidence 89999999887 589999999999999998888 999999999999999998776 566777878877754 332222
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhcCCceEEEE
Q 010710 454 VDQFLSVLEHITLDDITNIAQKIISSPLTMASY 486 (503)
Q Consensus 454 ~~~~~~~i~~vT~~di~~~a~~~l~~~~~~~~~ 486 (503)
.......++++|+++|+++++++...+.+++++
T Consensus 404 ~~~~~~~i~~vt~~~i~~~~~~l~~~~~~~~~~ 436 (939)
T 1q2l_A 404 TLDAVNIADRYDAKAVKERLAMMTPQNARIWYI 436 (939)
T ss_dssp TTTTTTCCCCCCHHHHHHHHHHCSGGGCEEEEE
T ss_pred HhcCchhhhccCHHHHHHHHHhcCHHHcEEEEE
Confidence 333456799999999999999854344444444
No 14
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=100.00 E-value=2.3e-42 Score=388.43 Aligned_cols=398 Identities=17% Similarity=0.171 Sum_probs=331.6
Q ss_pred CCceEEEEcCCCcEEEEecC-CCCeEEEEEEEeccccCCCCCCCcHHHHHHHHHcccCCCCCH-HHHHHHHHHcCCeeeE
Q 010710 73 PGKVKVTTLENGIRIASETS-VSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSH-LRIVREVEAIGGSILA 150 (503)
Q Consensus 73 ~~~~~~~~L~NG~~v~~~~~-~~~~~~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~gt~~~s~-~~l~~~l~~~g~~~~~ 150 (503)
...++..+|+||++|++.++ ..+++.+.+++++|+..++++..|++|++|||+|.||.+++. .++.++++..|+.+|+
T Consensus 32 ~~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~ep~~~~GlAH~lEHmlf~GT~~~p~~~~~~~~l~~~Gg~~NA 111 (990)
T 3cww_A 32 KREYRGLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSNA 111 (990)
T ss_dssp CCEEEEEEETTCCEEEEEECTTCSEEEEEEEESCCGGGSCTTSTTHHHHHHHHGGGCBSSSCSTTHHHHHHHTTTCEEEE
T ss_pred CcceEEEEeCCCCEEEEEECCCCCcEEEEEEecccCCCCCCCCCChHHHHHHHHhcCCCCCCCcchHHHHHHHcCCceeE
Confidence 35789999999999996554 467999999999999999999999999999999999999986 7999999999999999
Q ss_pred eeccceEEEEEecccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhHhhhCChHHHHHHHHHHHhc-CCCCCCCCC
Q 010710 151 SASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLL 229 (503)
Q Consensus 151 ~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~ 229 (503)
+|+.+++.|.+++++++++.+|+++.+++.+|.|++++|++++..+.+|++...++|...+.+.+...+| +|||+++..
T Consensus 112 ~T~~d~T~y~~~~~~~~l~~~l~~~~d~~~~p~f~~~~~~~E~~~V~~E~~~~~~~~~~~~~~~~~~~~~~~~py~~~~~ 191 (990)
T 3cww_A 112 FTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGT 191 (990)
T ss_dssp EECSSCEEEEEEEEGGGHHHHHHHHHGGGTCBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTSCTTSGGGCCCS
T ss_pred EECCCceEEEEEeCHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCCcccCCC
Confidence 9999999999999999999999999999999999999999999999999999889999999889999899 999999999
Q ss_pred CChhhhcCC-------CHHHHHHHHHhhcCCCCeEEEEeC-CChHHHHHHHHhhcCCCCCCCCCCCC--CCCccC----C
Q 010710 230 APESALNRL-------DGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTEP--KSVYIG----G 295 (503)
Q Consensus 230 ~~~~~l~~l-------~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~~~~~l~~~~~~~~~--~~~~~~----~ 295 (503)
|+.+.|..+ +.++|++||++||.|+||+++++| ++++++.++++++|+.||....+... .+++.. .
T Consensus 192 G~~~~l~~~~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (990)
T 3cww_A 192 GNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQ 271 (990)
T ss_dssp CCHHHHTHHHHHTTCCHHHHHHHHHHHHCCGGGEEEEEEESSCHHHHHHHHHHHHTTSCCCCCCCCCCCSCSSCGGGSSE
T ss_pred CCHHHHhhccccccchHHHHHHHHHHHhCCHhheEEEEEcCCCHHHHHHHHHHHhcCCccCCCCCCCCCCCCCChHHcCe
Confidence 999999999 999999999999999999999999 99999999999999999876433221 112211 1
Q ss_pred ceEEcCCCCceEEEEEeeeCCCCCC-CchhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeecc-
Q 010710 296 DYRQQADSPETHIALAFEVPGGWLK-DKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSI- 373 (503)
Q Consensus 296 ~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~vl~~lL~~~~~~~~gg~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~- 373 (503)
........+++.+.++|+.|+ .. ..+..++.+++.+||+++ +| + |+..||+ .|++|+++++...
T Consensus 272 ~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~l~~lLg~~~------~~----s-l~~~Lr~-~g~~~~~~a~~~~~ 337 (990)
T 3cww_A 272 LYKIVPIKDIRNLYVTFPIPD--LQKYYKSNPGHYLGHLIGHEG------PG----S-LLSELKS-KGWVNTLVGGQKAG 337 (990)
T ss_dssp EEEECCSSSCCEEEEEEEECC--CGGGTTTCHHHHHHHHHTCCS------TT----C-HHHHHHH-TTSCSCEEEEEEEE
T ss_pred EEEEEECCCCcEEEEEEEcCC--hhhhhhhCHHHHHHHHhcCCC------CC----c-HHHHHHH-CCCcceeeeccccC
Confidence 222333457899999999996 33 456788999999998642 21 5 6679996 5999999987654
Q ss_pred ccCcceEEEEEEeCc---chHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHc-cCChHHHHHHHHHHHHHhC
Q 010710 374 FNNTGLFGIYACTGS---DFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMN-LESRVIVSEDIGRQILTYG 449 (503)
Q Consensus 374 ~~~~~~f~i~~~~~p---~~~~~~~~~~~~~l~~~~~~g~i~~~el~~ak~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g 449 (503)
..+.+.|.+++.+.+ ++.+++++.+.+++..+.+.| +++++|++++......+... .+++...+..+...+. ..
T Consensus 338 ~~~~~~f~i~~~~~~~g~~~~~~~~~~i~~~l~~l~~~g-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ 415 (990)
T 3cww_A 338 ARGFMFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEG-PQEWVFQELKDLNAVAFRFKDKERPRGYTSKIAGILH-YY 415 (990)
T ss_dssp ETTEEEEEEEEECCHHHHHTHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHTT-TS
T ss_pred CCCccEEEEEEEEChHHhhhHHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcccCCcCCHHHHHHHHHHHHh-hC
Confidence 345688999999765 489999999999999998888 99999999998888777654 4567777777765532 32
Q ss_pred CcCCHHHHHHHHccCCHHHHHHHHHHhhcCCceEEEE
Q 010710 450 ERKSVDQFLSVLEHITLDDITNIAQKIISSPLTMASY 486 (503)
Q Consensus 450 ~~~~~~~~~~~i~~vT~~di~~~a~~~l~~~~~~~~~ 486 (503)
.+.......+.+.++|++||+++++.+...+..++++
T Consensus 416 ~~~~~~~~~~~i~~~t~~~i~~~~~~l~~~~~~~~~~ 452 (990)
T 3cww_A 416 PLEEVLTAEYLLEEFRPDLIEMVLDKLRPENVRVAIV 452 (990)
T ss_dssp CGGGTTTTTTCCCCCCHHHHHHHHTTCSGGGCEEEEE
T ss_pred CHHHHhccchhhhcCCHHHHHHHHHhcCHhHEEEEEE
Confidence 2222334446799999999999999765445544444
No 15
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=2.9e-42 Score=387.53 Aligned_cols=389 Identities=11% Similarity=0.058 Sum_probs=319.6
Q ss_pred CceEEEEcCCCcEEEEecCCCCeEEEEEEEeccccCCCCCCCcHHHHHHHHHcccCCCCCHHHH-HHHHHH-cCCeeeEe
Q 010710 74 GKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRI-VREVEA-IGGSILAS 151 (503)
Q Consensus 74 ~~~~~~~L~NG~~v~~~~~~~~~~~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~gt~~~s~~~l-~~~l~~-~g~~~~~~ 151 (503)
..++..+|+||++|++.+++.... ++.+|+..++++..|++|++|||+|+||.+++..++ .+.+.. .|+.+|++
T Consensus 36 ~~~~~~~l~nGl~v~~~~~~~~~~----~~~vg~~~e~~~~~GlAH~lEHm~f~Gt~~~p~~~~~~~~l~~~~g~~~NA~ 111 (995)
T 2fge_A 36 KAILFKHKKTGCEVMSVSNEDENK----VFGVVFRTPPKDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAF 111 (995)
T ss_dssp EEEEEEETTTCCEEEEEECSCSSE----EEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCSSCHHHHHHHHCCEEEECCE
T ss_pred eEEEEEECCCCCEEEEEEcCCCcc----EEEEEeCCCCcCCCChHHHHHHHHhCCCCCCCCccHHHHHHHhccCCCceee
Confidence 356678999999999766665433 367788899999999999999999999999998774 444544 68899999
Q ss_pred eccceEEEEEecc-cCCHHHHHHHHHHhhcCCCC--ChHHHHHH---------------HHHHHHHhHhhhCChHHHHHH
Q 010710 152 ASREQMGYSFDAL-KTYVPEMVELLVDCVRNPVF--LDWEVNEE---------------LRKLKSELGELHNNPQGLLLE 213 (503)
Q Consensus 152 ~~~~~~~~~~~~~-~~~l~~~l~ll~~~~~~p~f--~~~~~~~~---------------k~~~~~e~~~~~~~p~~~~~~ 213 (503)
|+.+++.|.+.+. .++++.+|+++.+++.+|.| ++++|+++ +..+.+|++...++|..++.+
T Consensus 112 T~~d~T~y~~~~~~~~~~~~~l~~~~d~~~~p~~~~~~~~~~~E~~~~e~~~~~~~~~~r~vV~~E~~~~~~~p~~~~~~ 191 (995)
T 2fge_A 112 TYPDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSEDISYKGVVFNEMKGVYSQPDNILGR 191 (995)
T ss_dssp ECSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTSSHHHHHHTCEEECSCTTSCCEEECHHHHHHHHHTTSHHHHHHH
T ss_pred ECCCceEEEEecCCHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhhhhhhcccccccccccchHHHHHHhhhCCHHHHHHH
Confidence 9999999999875 56999999999999999999 99999999 889999999999999999999
Q ss_pred HHHHHhc-CCCCCCCCCCChhhhcCCCHHHHHHHHHhhcCCCCeEEEEeC-CChHHHHHHHHhhcCCCC--CCC--CCCC
Q 010710 214 AIHSTGY-AGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLP--RLP--PPTE 287 (503)
Q Consensus 214 ~~~~~~~-~~~~~~~~~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~~~~~l~--~~~--~~~~ 287 (503)
.+...+| +|||+++..|+.+.|++++.++|++||++||+|+|++++++| ++++++.++++++|+.|+ ... .+..
T Consensus 192 ~~~~~~~~~~py~~~~~G~~~~i~~~t~~~l~~f~~~~Y~p~n~~l~v~Gd~d~~~~~~~i~~~f~~~~~~~~~~~~~~~ 271 (995)
T 2fge_A 192 IAQQALSPENTYGVDSGGDPKDIPNLTFEEFKEFHRQYYHPSNARIWFYGDDDPVHRLRVLSEYLDMFEASPSPNSSKIK 271 (995)
T ss_dssp HHHHHHCTTSGGGSCTTCCTTTGGGCCHHHHHHHHHHHSSGGGEEEEEEESSCHHHHHHHHHHHHTTCCCCSHHHHSCCC
T ss_pred HHHHHhCCCCCCCCCCCCChHhhhhcCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHHhhCCccccCCCcccC
Confidence 9999999 999999999999999999999999999999999999999999 999999999999999998 432 1111
Q ss_pred CCCCccCCc---eEE-----cCCCCceEEEEEeeeCCCCC-CCchhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHH
Q 010710 288 PKSVYIGGD---YRQ-----QADSPETHIALAFEVPGGWL-KDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVL 358 (503)
Q Consensus 288 ~~~~~~~~~---~~~-----~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~vl~~lL~~~~~~~~gg~g~g~~s~L~~~lR 358 (503)
..+.+.... ..+ ..+.+++++.++|++|. .. +.++..++.+|+.+|+++. +++|++.||
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~a~~vl~~~Lg~~~-----------~S~L~~~l~ 339 (995)
T 2fge_A 272 FQKLFSEPVRLVEKYPAGRDGDLKKKHMLCVNWLLSE-KPLDLQTQLALGFLDHLMLGTP-----------ASPLRKILL 339 (995)
T ss_dssp CCCCCSSCEEEEEEEECCSSSCGGGCEEEEEEEECCS-SCCCHHHHHHHHHHHHHHHSST-----------TSHHHHHHH
T ss_pred CCCCCCCCceEEEecccCCCCCccCccEEEEEEEcCC-CcCCHHHHHHHHHHHHHHcCCC-----------CCHHHHHHH
Confidence 122232221 112 22257899999999986 22 3588999999999998653 399999999
Q ss_pred hhcCCeEEEEee-eccccCcceEEEE-EEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHccC--Ch
Q 010710 359 NEYQQIQSFSAF-NSIFNNTGLFGIY-ACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLE--SR 434 (503)
Q Consensus 359 ~~~~~~Y~~~a~-~~~~~~~~~f~i~-~~~~p~~~~~~~~~~~~~l~~~~~~g~i~~~el~~ak~~~~~~~~~~~~--~~ 434 (503)
++ |++|+++++ .......+.|.+. ..+++++.+++++.+.+++.++.++| ++++||+++|+.+...+..... ++
T Consensus 340 e~-gl~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~i~~~l~~l~~~g-~~~~el~~ak~~~~~~~~~~~~~~~~ 417 (995)
T 2fge_A 340 ES-GLGEALVSSGLSDELLQPQFGIGLKGVSEENVQKVEELIMDTLKKLAEEG-FDNDAVEASMNTIEFSLRENNTGSFP 417 (995)
T ss_dssp HT-TSCSEECSCEEECSSSSCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHCCCTTSC
T ss_pred hc-CCCcceeeccccccccCeEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHhccCCCCc
Confidence 86 899999876 4444457889885 46889999999999999999999888 9999999999999999887542 33
Q ss_pred H--HHHHHHHHHHHHhCCcCCHHHHHHHHccCCH----H----HHHHHHHHhhcCC
Q 010710 435 V--IVSEDIGRQILTYGERKSVDQFLSVLEHITL----D----DITNIAQKIISSP 480 (503)
Q Consensus 435 ~--~~~~~~~~~~~~~g~~~~~~~~~~~i~~vT~----~----di~~~a~~~l~~~ 480 (503)
. ..+..+...++.++.+....++.+.++++++ + +|++++++||..+
T Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~ 473 (995)
T 2fge_A 418 RGLSLMLQSISKWIYDMDPFEPLKYTEPLKALKTRIAEEGSKAVFSPLIEKLILNN 473 (995)
T ss_dssp HHHHHHHHHHHHHTTTSCSSGGGCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTTTC
T ss_pred cHHHHHHHHHHHHhcCCChHHHhhhHHHHHHHHHHhcCCccHHHHHHHHHHHhcCC
Confidence 4 3456666666655666554445566666666 8 8999999999753
No 16
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=100.00 E-value=4.6e-41 Score=374.08 Aligned_cols=407 Identities=11% Similarity=0.083 Sum_probs=324.5
Q ss_pred CCCceEEEEcCCCcEEEEecCCCC-eEEEEEEEeccccCCCCCCCcHHHHHHHHHcccCCCCCHHHHHHHHHH--cCCee
Q 010710 72 EPGKVKVTTLENGIRIASETSVSP-AASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEA--IGGSI 148 (503)
Q Consensus 72 ~~~~~~~~~L~NG~~v~~~~~~~~-~~~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~gt~~~s~~~l~~~l~~--~g~~~ 148 (503)
..+.++..+|+||++|++.+++.+ .+. ..+.+|+..++++..|++|++|||+|.||.+++..++...+.. .|+.+
T Consensus 83 ~~~~~~~~~l~nGl~vl~i~~~~~~~~~--~~f~vg~~tep~~~~GvAH~lEHmlf~GS~k~p~~e~~~~l~~~slG~~l 160 (1193)
T 3s5m_A 83 KMTYTVYQHKKAKTQVISLGTNDPLDVE--QAFAFYVKTLTHSGKGIPHILEHSVLSGSKNYNYKNSIGLLEKGTLHTHL 160 (1193)
T ss_dssp TEEEEEEEETTTCCEEEEEEECCTTCCC--EEEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCCTTHHHHHHHSCCEEEE
T ss_pred cccceEEEECCCCCEEEEEECCCCCeEE--EEEEEEECCCCCCCchHHHHHHHHHhCCCCCCChhhHHHHHHHhccCceE
Confidence 345788899999999996555443 222 3345677778889999999999999999999999999999988 78999
Q ss_pred eEeeccceEEEEEeccc-CCHHHHHHHHHHhhcCCCCChHH--HHHH-----------------------------HHHH
Q 010710 149 LASASREQMGYSFDALK-TYVPEMVELLVDCVRNPVFLDWE--VNEE-----------------------------LRKL 196 (503)
Q Consensus 149 ~~~~~~~~~~~~~~~~~-~~l~~~l~ll~~~~~~p~f~~~~--~~~~-----------------------------k~~~ 196 (503)
|++++.++++|.+++.+ ++++.+|+++.+.+.+|.|++++ |.++ +..+
T Consensus 161 NA~T~~D~T~Y~~~~~~~~~l~~~L~l~~D~v~~P~l~~~~~~F~qE~~~~E~e~~~~~Er~~~~~~~~~~~~l~~k~vV 240 (1193)
T 3s5m_A 161 NAYTFNDRTVYMAGSMNNKDFFNIMGVYMDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVSFNGIV 240 (1193)
T ss_dssp EEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTCHHHHHHHTCEEEEEECCTTTTTCTTSCEETTEEEEEECHH
T ss_pred EeEEcCCeEEEEEEecCHHHHHHHHHHHHHHHhCCCCccccchhhhhhhhhhhhccchhhhccccccccccchhhHHHHH
Confidence 99999999999999887 89999999999999999998877 8776 4688
Q ss_pred HHHhHhhhCChHHHHHHHHHHHhc-CCCCCCCCCCChhhhcCCCHHHHHHHHHhhcCCCCeEEEEeC-CChHHHHHHHHh
Q 010710 197 KSELGELHNNPQGLLLEAIHSTGY-AGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEP 274 (503)
Q Consensus 197 ~~e~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~ 274 (503)
.+|++...++|...+.+.+...+| +|||+++..|+++.|.+++.+++++||++||.|+|++++++| ++++++++++++
T Consensus 241 ~~E~k~~~~~p~~~~~~~l~~~lf~~hpY~~~~~G~~e~I~~lt~edl~~F~~~~Y~P~Na~l~v~Gdid~~~~~~~v~~ 320 (1193)
T 3s5m_A 241 YNEMKGALSSPLEDLYHEEMKYMFPDNVHSNNSGGDPKEITNLTYEEFKEFYYKNYNPKKVKVFFFSKNNPTELLNFVDQ 320 (1193)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHCTTSGGGSCTTCCHHHHTTCCHHHHHHHHHHHSCTTTCEEEEEESSCTHHHHHHHHH
T ss_pred HHHHHHhhCCHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHhhCCHHHHHHHHHHhcCccceEEEEEecCCHHHHHHHHHH
Confidence 999999999999999999999999 999999999999999999999999999999999999999999 999999999999
Q ss_pred hcCCCCCCCCCC----C--CCCCccCC-ceEEc----CCCCceEEEEEeeeCCC---CCC--------------------
Q 010710 275 LLSDLPRLPPPT----E--PKSVYIGG-DYRQQ----ADSPETHIALAFEVPGG---WLK-------------------- 320 (503)
Q Consensus 275 ~~~~l~~~~~~~----~--~~~~~~~~-~~~~~----~~~~~~~v~~~~~~~~~---~~~-------------------- 320 (503)
+|+.|+..+.+. . ..+...+. ..... .+..++++.++|.+++. ..+
T Consensus 321 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~q~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~y~~~~ 400 (1193)
T 3s5m_A 321 YLGQLDYSKYRDDAVESVEYQTYKKGPFYIKKKYGDHSEEKENLVSVAWLLNPKVDKTNNHNNNHSNNQSSENNGYSNGS 400 (1193)
T ss_dssp HHTTCCGGGCCCCCCCCCCCCBCCCCCEEEEEEEECCCSSCCEEEEEEEESSCBCC----------------------CC
T ss_pred HhccCCCCCCCcccccccCCCCCCCCCeEEEEecCCCCCccccEEEEEEEecCccccccccccccccccccccccccccc
Confidence 999998643311 1 11122222 22221 34678999999998741 012
Q ss_pred ---------CchhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEE-eeeccccCcceEEEEE-EeCcc
Q 010710 321 ---------DKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFS-AFNSIFNNTGLFGIYA-CTGSD 389 (503)
Q Consensus 321 ---------~~~~~~~~vl~~lL~~~~~~~~gg~g~g~~s~L~~~lR~~~~~~Y~~~-a~~~~~~~~~~f~i~~-~~~p~ 389 (503)
.++..++.||+.||+|+.+ ||||+.||+ .|++|+++ +++......+.|.+++ .++++
T Consensus 401 ~~~~~~~~~~~d~~al~vL~~iLggg~s-----------SrL~~~L~e-~gLa~~v~~~~~~~~~~~~~f~i~~~g~~~~ 468 (1193)
T 3s5m_A 401 HSSDLSLENPTDYFVLLIINNLLIHTPE-----------SVLYKALTD-CGLGNNVIDRGLNDSLVQYIFSIGLKGIKRN 468 (1193)
T ss_dssp CCSTTCCCSHHHHHHHHHHHHHHHSSTT-----------SHHHHHHHH-HCSCSEEEEEEEECSSSSCEEEEEEEEECTT
T ss_pred ccccccccCccHHHHHHHHHHHHCCCCC-----------CHHHHHHHh-cCCeeeecccccccccCCcEEEEEEecCChh
Confidence 4789999999999997644 999999998 59999998 5565555677888887 45554
Q ss_pred h--------H-HHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHc-cCChHHH--HHHHHHHHHHhCCcCC---H
Q 010710 390 F--------V-SKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMN-LESRVIV--SEDIGRQILTYGERKS---V 454 (503)
Q Consensus 390 ~--------~-~~~~~~~~~~l~~~~~~g~i~~~el~~ak~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~g~~~~---~ 454 (503)
+ + +++.+.+.+++.++.++| +++++|+++|+++...+... ..++... +..+...+++.|++.. .
T Consensus 469 ~~~~~~~~~~~~~~~~~I~~~L~~l~~~g-i~~~ele~a~~~le~~~re~~~~~~~gl~~~~~~~~~w~~~~dp~~~l~~ 547 (1193)
T 3s5m_A 469 NEKIKNFDKVHYEVEDVIMNALKKVVKEG-FNKSAVEASINNIEFILKEANLKTSKSIDFVFEMTSKLNYNRDPLLIFEF 547 (1193)
T ss_dssp CTTCSCGGGHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHTTCCTTTTTSH
T ss_pred hccccchhhHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 3 5 689999999999999998 99999999999999988774 3344322 3455666677787765 4
Q ss_pred HHHHHHHccCC---HHHHHHHHHHhhcCCceEEEE-ccCCCCH
Q 010710 455 DQFLSVLEHIT---LDDITNIAQKIISSPLTMASY-VINVPGY 493 (503)
Q Consensus 455 ~~~~~~i~~vT---~~di~~~a~~~l~~~~~~~~~-~~~~p~~ 493 (503)
++.++.++..+ +.++++++++||..++..+.+ +..-+.+
T Consensus 548 ~~~l~~l~~~~~~~~~~~~~li~~yll~n~~~~~~~~~P~~~~ 590 (1193)
T 3s5m_A 548 EKYLNIVKNKIKNEPMYLEKFVEKHFINNAHRSVILLEGDENY 590 (1193)
T ss_dssp HHHHHHHHHHHHHSTTHHHHHHHHHTTTCCCEEEEEEEEESSH
T ss_pred HHHHHHHHHHhhcChHHHHHHHHHHhccCCceEEEEEEcCCCH
Confidence 55555555543 459999999999755553333 4444544
No 17
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=100.00 E-value=7.5e-40 Score=325.48 Aligned_cols=344 Identities=21% Similarity=0.287 Sum_probs=286.5
Q ss_pred cEEEEecCCCCeEEEEEEEeccccCCCCCCCcHHHHHHHHHcccCCCCCHHHHHHHHHHcCCeeeEeeccceEEEEEecc
Q 010710 85 IRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDAL 164 (503)
Q Consensus 85 ~~v~~~~~~~~~~~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~ 164 (503)
+||+.++.+.|.+++.+++++|+.+++ ..|++|+++||+|+||++++..++.+.++..|++++++++++++.|+++++
T Consensus 1 l~v~~~~~~~~~v~~~~~~~~Gs~~e~--~~G~ah~leh~lf~Gt~~~~~~~l~~~l~~~G~~~na~t~~~~t~~~~~~~ 78 (352)
T 3cx5_B 1 LTVSARDAPTKISTLAVKVHGGSRYAT--KDGVAHLLNRFNFQNTNTRSALKLVRESELLGGTFKSTLDREYITLKATFL 78 (352)
T ss_dssp CEEEEECCSCSEEEEEEEESCSGGGCS--STTHHHHHHHHTTSCBSSSCHHHHHHHHHHHTCEEEEEECSSCEEEEEEEE
T ss_pred CEEEEeeCCCceEEEEEEEeeeccCCC--cccHHHHHHHHhccCcCCCCHHHHHHHHHHhCCeEEEEEccceEEEEEEec
Confidence 588988888999999999999999964 789999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhhcCCCCChHHHH-HHHHHHHHHhHhhhCChHHHHHHHHHHHhcCCCCCCCCCCChhhhcCCCHHHH
Q 010710 165 KTYVPEMVELLVDCVRNPVFLDWEVN-EELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDGTIL 243 (503)
Q Consensus 165 ~~~l~~~l~ll~~~~~~p~f~~~~~~-~~k~~~~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~l 243 (503)
+++++.+|+++.+++.+|.|++++|+ ++|+.+.++++...++|...+.+.++..+|.+||+++.. .+.|++++.+++
T Consensus 79 ~~~l~~~l~ll~d~~~~p~f~~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~p~~~~~~--~~~l~~it~~~l 156 (352)
T 3cx5_B 79 KDDLPYYVNALADVLYKTAFKPHELTESVLPAARYDYAVAEQCPVKSAEDQLYAITFRKGLGNPLL--YDGVERVSLQDI 156 (352)
T ss_dssp GGGHHHHHHHHHHHHHHBCCCHHHHHHTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTTTSCSS--CCSSSCCCHHHH
T ss_pred hhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCccc--hhhhccCCHHHH
Confidence 99999999999999999999999998 999999999999999999999999999999889998774 689999999999
Q ss_pred HHHHHhhcCCCCeEEEEeCCChHHHHHHH-HhhcCCCCCCCCCCC--CCCCccCCceEEcCCCCceEEEEEeeeCCCCCC
Q 010710 244 EEIVAENFTAPRMVLAASGVDLDELLPIA-EPLLSDLPRLPPPTE--PKSVYIGGDYRQQADSPETHIALAFEVPGGWLK 320 (503)
Q Consensus 244 ~~f~~~~~~~~~~~l~i~G~~~~~l~~l~-~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 320 (503)
++||+++|.|++++++++|++++++.+++ +++|++||....+.. ..+.+.++...+.. ..++.+.++++ .+
T Consensus 157 ~~f~~~~y~~~n~~l~v~G~~~~~~~~~i~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~ 230 (352)
T 3cx5_B 157 KDFADKVYTKENLEVSGENVVEADLKRFVDESLLSTLPAGKSLVSKSEPKFFLGEENRVRF-IGDSVAAIGIP-----VN 230 (352)
T ss_dssp HHHHHHHCCGGGEEEEEESSCHHHHHHHHHHSTTTTSCCCCCCCCCSCCCCCCSCEEEEEC-SSSEEEEEEEE-----EC
T ss_pred HHHHHHhCCcCcEEEEEeCCCHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccCCeEEEec-CCCceEEEecC-----CC
Confidence 99999999999999999999999999999 899999986543221 11223343333433 35666655433 35
Q ss_pred CchhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeeccccCcceEEEEEEeC-cchHHHHHHHHH
Q 010710 321 DKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACTG-SDFVSKAVDLVV 399 (503)
Q Consensus 321 ~~~~~~~~vl~~lL~~~~~~~~gg~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~~~~~~f~i~~~~~-p~~~~~~~~~~~ 399 (503)
+++.+++.|++.+|| + +||++.|++ ++++...+.+.|.|.++++++ ++++.+++.
T Consensus 231 ~~~~~~l~vl~~iLg---------------~----~lre~~gl~--~~~~~~~~~~~g~~~i~~~~~~~~~~~~~i~--- 286 (352)
T 3cx5_B 231 KASLAQYEVLANYLT---------------S----ALSELSGLI--SSAKLDKFTDGGLFTLFVRDQDSAVVSSNIK--- 286 (352)
T ss_dssp TTTHHHHHHHHHHHH---------------S----TTSTTGGGC--SEEEEEEETTEEEEEEEEEESCHHHHHHHHH---
T ss_pred ChhHHHHHHHHHHhC---------------c----chhcccCce--EEEeecCcCcceeEEEEEEeCCHHHHHHHHH---
Confidence 578999999999998 4 678888876 445554456778999999997 555555444
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhCCcCCHHHHHHHHccCCHHHHHHHHHHhhcC
Q 010710 400 RELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERKSVDQFLSVLEHITLDDITNIAQKIISS 479 (503)
Q Consensus 400 ~~l~~~~~~g~i~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vT~~di~~~a~~~l~~ 479 (503)
+++. +| ++++||+++|+.++.++....++. |.+.+. .|++||++ + | +
T Consensus 287 ~~l~----~~-~t~~el~~ak~~~~~~~~~~~~~~--------------~~~~~~-----~i~~vt~~-------~-~-~ 333 (352)
T 3cx5_B 287 KIVA----DL-KKGKDLSPAINYTKLKNAVQNESV--------------SSPIEL-----NFDAVKDF-------K-L-G 333 (352)
T ss_dssp HHHH----HH-HSCEECGGGHHHHHHHHHHHCCST--------------TCCCCS-----CGGGCCEE-------C-C-C
T ss_pred HHHH----hc-CCHHHHHHHHHHHHHHHHhhhhcc--------------CCccce-----eeeeeeHh-------h-c-C
Confidence 4443 24 899999999999999999988873 333333 59999932 2 5 8
Q ss_pred CceEEEE--ccCCCCHHH
Q 010710 480 PLTMASY--VINVPGYES 495 (503)
Q Consensus 480 ~~~~~~~--~~~~p~~~~ 495 (503)
+++++++ +..+|.+++
T Consensus 334 ~~~~~~~G~~~~~~~~~~ 351 (352)
T 3cx5_B 334 KFNYVAVGDVSNLPYLDE 351 (352)
T ss_dssp SCEEEEEESGGGSCCGGG
T ss_pred CceEEEEccccccCcccc
Confidence 8899999 888998875
No 18
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=4.3e-36 Score=335.80 Aligned_cols=380 Identities=10% Similarity=0.040 Sum_probs=310.3
Q ss_pred ceEEEEcCCCcEEEEecCC---C-CeEEEEEEEeccccCCCCCCCcHHHHHHHHHcccCCCCCHHHHHHHHHHcCCeeeE
Q 010710 75 KVKVTTLENGIRIASETSV---S-PAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILA 150 (503)
Q Consensus 75 ~~~~~~L~NG~~v~~~~~~---~-~~~~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~gt~~~s~~~l~~~l~~~g~~~~~ 150 (503)
.++.++++||++||+++++ . |++.|.+.+.+|...+++++.++++|+..|+..|+.++ ....+..|.++++
T Consensus 499 ~p~~~~l~ng~~v~~~~~~~f~~pp~~~i~l~~~~~~~~~~~~~~~~~~l~~~ll~~g~~~~-----~~~~~l~G~~~~~ 573 (939)
T 1q2l_A 499 HPELIVDESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQVMFALNDYLAGLALDQL-----SNQASVGGISFST 573 (939)
T ss_dssp SCEEEEEETTEEEEEECCSSCTTSSEEEEEEEEECGGGGSSHHHHHHHHHHHHHHHHHHHHH-----HHHHHHTTEEEEE
T ss_pred CCEEEEECCCceEeecCCCccCCCCcEEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHHHHH-----hhHHHHcCcEEEE
Confidence 4578899999999977666 2 49999999999999988778899999999998776533 4445667888888
Q ss_pred eeccceEEEEEecccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhHhh-hCChHHHHHHHHHHHhcCCCCCCCCC
Q 010710 151 SASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGEL-HNNPQGLLLEAIHSTGYAGALGNPLL 229 (503)
Q Consensus 151 ~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~ 229 (503)
+. .+++.+++++.+++++.+|+++.+.+.+|.|++++|+.+|+++..++++. .++|..++.+.++..+|.+ + .+..
T Consensus 574 ~~-~~g~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~l~~~~~~~p~~~a~~~l~~~l~~~-~-~~~~ 650 (939)
T 1q2l_A 574 NA-NNGLMVNANGYTQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVP-Y-FSRD 650 (939)
T ss_dssp EE-SSEEEEEEEEESSSHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHTTSSS-C-CCHH
T ss_pred ee-CCcEEEEEEcccHhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhhcChHHHHHHHHHHHhcCC-C-CCHH
Confidence 88 99999999999999999999999999999999999999999999999987 4579999999999888732 3 4445
Q ss_pred CChhhhcCCCHHHHHHHHHhhcCCCCeEEEEeC-CChHHHHHHHHhhcCCCCCCCCCCCCC--CCccCC-ceE--EcCCC
Q 010710 230 APESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTEPK--SVYIGG-DYR--QQADS 303 (503)
Q Consensus 230 ~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~~~~~l~~~~~~~~~~--~~~~~~-~~~--~~~~~ 303 (503)
++.+.|++++.+++++|++++|.+.+++++|+| +++++++++++++++.|+....+.... ....++ ... ...+.
T Consensus 651 ~~~~~l~~it~~~l~~f~~~~~~~~~~~~~vvGn~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (939)
T 1q2l_A 651 ERRKILPSITLKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQKQLGADGSEWCRNKDVVVDKKQSVIFEKAGNS 730 (939)
T ss_dssp HHHHHGGGCCHHHHHHHHHHHHTTCEEEEEEEESCCHHHHHHHHHHHHHHHTCCCSCCCCCEEECCCSCEEEEEEECCSS
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHHccCCccccccceEEeCCCceEEEecCCCC
Confidence 678999999999999999999999999999999 999999999999998887543221111 111222 222 22233
Q ss_pred CceEE-EEEeeeCCCCCCCchhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeecccc-Ccc-eE
Q 010710 304 PETHI-ALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFN-NTG-LF 380 (503)
Q Consensus 304 ~~~~v-~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~~~~~gg~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~~-~~~-~f 380 (503)
.++.+ .++|+.+. .+.++.+.+.+|+.++. ++||++||++.|++|+++++..... ..| .|
T Consensus 731 ~~~~~~~~~~~~~~--~~~~~~~~~~lL~~~~~---------------s~lf~~LRek~gl~Y~v~s~~~~~~~~~g~~~ 793 (939)
T 1q2l_A 731 TDSALAAVFVPTGY--DEYTSSAYSSLLGQIVQ---------------PWFYNQLRTEEQLGYAVFAFPMSVGRQWGMGF 793 (939)
T ss_dssp SCEEEEEEEECSSC--CHHHHHHHHHHHHHHHH---------------HHHTHHHHTSCCSSSCEEEEEEEETTEEEEEE
T ss_pred CCceeEEEEEecCC--CCHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHhCceeeeeEeecCCeeEEEE
Confidence 45555 66776653 45566677777777666 9999999999999999999876433 334 25
Q ss_pred EEEE-EeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhCCcCC-HHHHH
Q 010710 381 GIYA-CTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERKS-VDQFL 458 (503)
Q Consensus 381 ~i~~-~~~p~~~~~~~~~~~~~l~~~~~~g~i~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~ 458 (503)
.++. .++|+++.++++.+++++.++.. | +|++||+++|+.++.++....++....+..+|..++.++...+ .+++.
T Consensus 794 ~i~s~~~~p~~~~~~i~~~~~~~~~~~~-~-~t~~el~~~k~~l~~~~~~~~~s~~~~~~~~w~~i~~~~~~~d~~~~~~ 871 (939)
T 1q2l_A 794 LLQSNDKQPSFLWERYKAFFPTAEAKLR-A-MKPDEFAQIQQAVITQMLQAPQTLGEEASKLSKDFDRGNMRFDSRDKIV 871 (939)
T ss_dssp EEEESSSCHHHHHHHHHHHHHHHHHHHH-T-CCHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHTCTTCCHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHH-h-CCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCCCChHHHHH
Confidence 5656 57899999999999999999874 6 9999999999999999999999999999999988886665544 68899
Q ss_pred HHHccCCHHHHHHHHHHhhcCCc
Q 010710 459 SVLEHITLDDITNIAQKIISSPL 481 (503)
Q Consensus 459 ~~i~~vT~~di~~~a~~~l~~~~ 481 (503)
+.|++||++||++++++|+.++.
T Consensus 872 ~~i~~vT~~dv~~~a~~~l~~~~ 894 (939)
T 1q2l_A 872 AQIKLLTPQKLADFFHQAVVEPQ 894 (939)
T ss_dssp HHHHTCCHHHHHHHHHHHTTSCS
T ss_pred HHHhcCCHHHHHHHHHHHhcCCC
Confidence 99999999999999999986543
No 19
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=5e-34 Score=320.64 Aligned_cols=380 Identities=12% Similarity=0.010 Sum_probs=300.9
Q ss_pred EEcCCCcEEEEecCC-CCeEEEEEEEeccccCCCCCCCcHHHHHHHHHcc-cCCCCCHHHHHHHHHHcCCeeeE-----e
Q 010710 79 TTLENGIRIASETSV-SPAASIGLYLDFGSVYETPSSCGASNLLEKMAFK-STKNRSHLRIVREVEAIGGSILA-----S 151 (503)
Q Consensus 79 ~~L~NG~~v~~~~~~-~~~~~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~-gt~~~s~~~l~~~l~~~g~~~~~-----~ 151 (503)
..+.||++|+++++. .+.+++.+++++|+. +++..+.++++.+++.. ||++++..++.+.++...|++++ +
T Consensus 556 ~~~~nG~~v~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~Gt~~~s~~el~~~l~~~~ggl~~~~~~~~ 633 (995)
T 2fge_A 556 VGDINGVKVLRHDLFTNDIIYTEVVFDIGSL--KHELLPLVPLFCQSLLEMGTKDLTFVQLNQLIGRKTGGISVYPLTSS 633 (995)
T ss_dssp EEESSSSEEEEEECCCSSEEEEEEEEECTTS--CTTTGGGHHHHHHHHHHSCCSSSCHHHHHHHHHHHSSEEEEEEEEEE
T ss_pred eeecCCceEEEEecCCCCeEEEEEEeeCCCC--CHHHhhhHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCceEeeccccc
Confidence 344899999976665 579999999999886 45688999999999976 99999999999999966665665 5
Q ss_pred ecc-----ceEEEEEecccCCHHHHHHHHHHhhcCCCCChH-HHHHHHHHHHHHhHhhh-CChHHHHHHHHHHHhc-CCC
Q 010710 152 ASR-----EQMGYSFDALKTYVPEMVELLVDCVRNPVFLDW-EVNEELRKLKSELGELH-NNPQGLLLEAIHSTGY-AGA 223 (503)
Q Consensus 152 ~~~-----~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~-~~~~~k~~~~~e~~~~~-~~p~~~~~~~~~~~~~-~~~ 223 (503)
++. +++.+++++++++++.+|+++.+++.+|.|+++ +|++++++++.++++.. +++..++...++...+ .++
T Consensus 634 ~~~~~~~~~~~~i~~~~l~~~l~~~l~ll~e~l~~p~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~ 713 (995)
T 2fge_A 634 VRGKDEPCSKIIVRGKSMAGRADDLFNLMNCLLQEVQFTDQQRFKQFVSQSRARMENRLRGSGHGIAAARMDAMLNIAGW 713 (995)
T ss_dssp ETTEEEEEEEEEEEEEEEGGGHHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCHHHH
T ss_pred cCccccccceEEEEEEEehhhHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhCChhHH
Confidence 544 889999999999999999999999999999999 99999999999999876 5777777887776644 444
Q ss_pred CCCCCC-----CCh--------hhhcCCCHHHHHHHHHhhcCCCCeEEEEeC-CCh-HHHHHHHHhhcCCC-CCCCCCCC
Q 010710 224 LGNPLL-----APE--------SALNRLDGTILEEIVAENFTAPRMVLAASG-VDL-DELLPIAEPLLSDL-PRLPPPTE 287 (503)
Q Consensus 224 ~~~~~~-----~~~--------~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-~~~-~~l~~l~~~~~~~l-~~~~~~~~ 287 (503)
++.... +.. +.++.+ .++|++||+++|.+++++++++| +++ +++.++++++++.| |....+..
T Consensus 714 ~~~~~~gl~~~~~~~~l~~~~~e~~~~i-~~~L~~~~~~~~~~~~~~~~v~Gd~~~~~~~~~~~~~~~~~l~p~~~~~~~ 792 (995)
T 2fge_A 714 MSEQMGGLSYLEFLHTLEKKVDEDWEGI-SSSLEEIRRSLLARNGCIVNMTADGKSLTNVEKSVAKFLDLLPENPSGGLV 792 (995)
T ss_dssp HHHHHHSHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHCCSTTCEEEEEECHHHHHHHHHHHHHHHHTSCSSCSSCSC
T ss_pred HHHHHccHHHHHHHHHHHHhhhcCHHHH-HHHHHHHHHHHcCcCCcEEEEEeCHHHHHHHHHHHHHHHHhhCccCCCCCC
Confidence 432111 111 457788 99999999999999999999999 995 99999999999999 75443221
Q ss_pred CCCCccCC--ceEEcCCCCceEEEEEeeeCCCCCCCchhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeE
Q 010710 288 PKSVYIGG--DYRQQADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQ 365 (503)
Q Consensus 288 ~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~~~~~gg~g~g~~s~L~~~lR~~~~~~Y 365 (503)
+ ..++.+ ......+....++..+++... +++++.+++.|+++||++ ++||++||+ .|++|
T Consensus 793 ~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~d~~al~vl~~iLg~--------------~~L~~~iRe-~g~aY 854 (995)
T 2fge_A 793 T-WDGRLPLRNEAIVIPTQVNYVGKAGNIYS--TGYELDGSAYVISKHISN--------------TWLWDRVRV-SGGAY 854 (995)
T ss_dssp C-CCCCCCCCCEEEECSCSSBEEEEEEEGGG--GTCCCCTHHHHHHHHHHH--------------THHHHHTTT-TTCCS
T ss_pred c-ccccCCccceEEEecCceEEEEEecCCCC--CCCcccHHHHHHHHHHCC--------------CccHHHhhh-cCCCc
Confidence 1 111111 112233344555555665544 688999999999999995 699999999 88999
Q ss_pred EEEeeeccccCcceEE-EEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHccCChHHHHHHHHHH
Q 010710 366 SFSAFNSIFNNTGLFG-IYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQ 444 (503)
Q Consensus 366 ~~~a~~~~~~~~~~f~-i~~~~~p~~~~~~~~~~~~~l~~~~~~g~i~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~ 444 (503)
+++++... .|.|+ ++...+| +..++++.+.+.+..+...+ +|++||+++|..+++++ ....++...+...+..
T Consensus 855 g~~s~~~~---~G~~~~~~s~~dp-~~~~~~~~~~~~~~~l~~~~-~te~el~~ak~~li~~~-~~~~~~~~~~~~~~~~ 928 (995)
T 2fge_A 855 GGFCDFDS---HSGVFSYLSYRDP-NLLKTLDIYDGTGDFLRGLD-VDQETLTKAIIGTIGDV-DSYQLPDAKGYSSLLR 928 (995)
T ss_dssp EEEEEEET---TTTEEEEEEESBS-CSHHHHHHHHTHHHHHHTCC-CCHHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHH
T ss_pred ccceEeCC---CccEEEEEEEcCC-CHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhc-cCCCCHHHHHHHHHHH
Confidence 99998765 47788 7888888 57788888888887776555 99999999999999998 4566777777777666
Q ss_pred HHHhCCc-CCHHHHHHHHccCCHHHHHHHHHHhhcC--CceEEEE
Q 010710 445 ILTYGER-KSVDQFLSVLEHITLDDITNIAQKIISS--PLTMASY 486 (503)
Q Consensus 445 ~~~~g~~-~~~~~~~~~i~~vT~~di~~~a~~~l~~--~~~~~~~ 486 (503)
++ .|.+ ...+++.+.|.+||++||+++|++|+.. +.+++++
T Consensus 929 ~~-~g~~~~~~~~~~~~i~~vT~edv~~~a~~~~~~~~~~~~~vv 972 (995)
T 2fge_A 929 HL-LGVTDEERQRKREEILTTSLKDFKDFAQAIDVVRDKGVAVAV 972 (995)
T ss_dssp HH-TTCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHCEEEEE
T ss_pred HH-cCcCHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCEEEE
Confidence 55 4553 4568899999999999999999999985 6677666
No 20
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=100.00 E-value=9.8e-33 Score=310.18 Aligned_cols=379 Identities=11% Similarity=0.035 Sum_probs=309.2
Q ss_pred ceEEEEcCCCcEEEEecCC---CCeEEEEEEEeccccCCCCCCCcHHHHHHHHHcccCCCCCHHHHHHHHHHcCCeeeEe
Q 010710 75 KVKVTTLENGIRIASETSV---SPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILAS 151 (503)
Q Consensus 75 ~~~~~~L~NG~~v~~~~~~---~~~~~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~ 151 (503)
.+..++++||++||.++++ .|...+.+.+.+|...++++..++++|+..|+..+ ++..++...+ .|++++++
T Consensus 518 ~p~~~~~~ng~~v~~~~~~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~L~~~ll~~~---~~~~~~~~~l--~G~~~~~~ 592 (990)
T 3cww_A 518 YPALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDS---LNEYAYAAEL--AGLSYDLQ 592 (990)
T ss_dssp SCEEEEECSSEEEEEEECSSCCCSEEEEEEEEECGGGTSSHHHHHHHHHHHHHHHHH---HHHHHHHHHH--TTEEEEEE
T ss_pred CCeeeecCCCceEeeccCCccCCCcEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHH---HHHhhhHHHh--CCeEEEEE
Confidence 3567889999999976655 46888888888888888878889999999998653 2344444444 68889999
Q ss_pred eccceEEEEEecccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhHhhhC-ChHHHHHHHHHHHhcCCCCCCCCCC
Q 010710 152 ASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHN-NPQGLLLEAIHSTGYAGALGNPLLA 230 (503)
Q Consensus 152 ~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~ 230 (503)
++.+++.+++++++++++.+|+++.+.+.+|.|++++|++.++.++..+++... +|..++...+...++.+++.. .+
T Consensus 593 ~~~~~~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~~~~~~~~~p~~~a~~~~~~~l~~~~~~~--~~ 670 (990)
T 3cww_A 593 NTIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEARFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTK--DE 670 (990)
T ss_dssp EETTEEEEEEEEESTTHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHBSSCCCH--HH
T ss_pred EcCCeEEEEEEeccHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHhCCCCCCH--HH
Confidence 999999999999999999999999999999999999999999999999998776 899999999999888544442 34
Q ss_pred ChhhhcCCCHHHHHHHHHhhcCCCCeEEEEeC-CChHHHHHH---HHhhcCCCCCCC-CCC----C-CCCCcc-CCceEE
Q 010710 231 PESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPI---AEPLLSDLPRLP-PPT----E-PKSVYI-GGDYRQ 299 (503)
Q Consensus 231 ~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l---~~~~~~~l~~~~-~~~----~-~~~~~~-~~~~~~ 299 (503)
+.+.|++++.++|.+|++++|.+.+++++++| ++.+++.++ +.++++.+|... .+. . .....+ +....+
T Consensus 671 ~~~~l~~lt~~~l~~~~~~~~~~~~~~~~v~Gn~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (990)
T 3cww_A 671 LKEALADVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTLIEHAHTKPLLPSQLAAYREVQLPDRGWFVY 750 (990)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHCCEECCGGGCCCCCBBCCCTTEEEEE
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHHhccCCCCCCchhhccccceEEcCCCCeEEE
Confidence 67899999999999999999988999999999 999999888 667777665321 110 0 000112 222222
Q ss_pred ---cCCCCceEEEEEeeeCCCCCCCchhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeeccccC
Q 010710 300 ---QADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNN 376 (503)
Q Consensus 300 ---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~~~~~gg~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~~~ 376 (503)
..+..++.+.+++..+. ++.++.+++.||+++|+ ++||.+||++.|++|+++++.....+
T Consensus 751 ~~~~~~~~~~~v~~~~~~~~--~~~~~~~~l~ll~~il~---------------~~lf~~LRek~~lgY~v~s~~~~~~g 813 (990)
T 3cww_A 751 QQRNEVHNNSGIEIYYQTDM--QSTSENMFLELFAQIIS---------------EPAFNTLRTKEQLGYIVFSGPRRANG 813 (990)
T ss_dssp EEECSSCSSEEEEEEEEEEE--CCHHHHHHHHHHHHHHH---------------HHHHHHHTTTTCCCSEEEEEEEEETT
T ss_pred EecCCCCCCcEEEEEEeCCC--CCHHHHHHHHHHHHHHH---------------HHHHHHHHhccCCcEEEEEEEEeeCC
Confidence 23466777777787764 68899999999999998 99999999999999999998766544
Q ss_pred cceEE--EEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhCCcCC-
Q 010710 377 TGLFG--IYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERKS- 453 (503)
Q Consensus 377 ~~~f~--i~~~~~p~~~~~~~~~~~~~l~~~~~~g~i~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~- 453 (503)
...|. ++..++|+++.++++.+.+++..+.. + ++++||+++|..+++++....+++......+|..++.++...+
T Consensus 814 ~~~~~~~vqs~~dp~~~~~~i~~f~~~~~~l~~-~-~te~el~~~k~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~ 891 (990)
T 3cww_A 814 IQGLRFIIQSEKPPHYLESRVEAFLITMEKSIE-D-MTEEAFQKHIQALAIRRLDKPKKLSAESAKYWGEIISQQYNFDR 891 (990)
T ss_dssp EEEEEEEEEESSCHHHHHHHHHHHHHHHHHHHH-H-SCHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHTTCCCTTH
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHHHHHHHHHH-h-cCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCCCh
Confidence 33333 35556798999999999999999988 5 9999999999999999999999999988888888876654443
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhcC
Q 010710 454 VDQFLSVLEHITLDDITNIAQKIISS 479 (503)
Q Consensus 454 ~~~~~~~i~~vT~~di~~~a~~~l~~ 479 (503)
++++.+.|++||++||++++++++..
T Consensus 892 ~~~~~~~i~~vT~~di~~~a~~~l~~ 917 (990)
T 3cww_A 892 DNTEVAYLKTLTKADIIKFYKEMLAV 917 (990)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHTST
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 68889999999999999999999975
No 21
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=99.97 E-value=8.9e-30 Score=283.62 Aligned_cols=377 Identities=12% Similarity=0.084 Sum_probs=283.4
Q ss_pred CCCcEEEEecCC-CCeEEEEEEEeccccCCCCCCCcHHHHHHHHHcc-cCCCCCHHHHHHHHHHcCCeeeEeec------
Q 010710 82 ENGIRIASETSV-SPAASIGLYLDFGSVYETPSSCGASNLLEKMAFK-STKNRSHLRIVREVEAIGGSILASAS------ 153 (503)
Q Consensus 82 ~NG~~v~~~~~~-~~~~~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~-gt~~~s~~~l~~~l~~~g~~~~~~~~------ 153 (503)
.||++|+..+.+ ++.+++.++++.|... .+..+...|+..++.+ ||+++++.++...++.++|+++++++
T Consensus 724 ~~gv~v~~~~~~TNGIvY~~l~fdl~~l~--~e~l~yl~Lf~~~L~~lGT~~~sy~el~~~i~~~tGGis~s~~~~~~~~ 801 (1193)
T 3s5m_A 724 EGNVPILVYEMPTTGIVYLQFVFSLDHLT--VDELAYLNLFKTLILENKTNKRSSEDFVILREKNIGSMSANVALYSKDD 801 (1193)
T ss_dssp TTCEEEEEEECCCTTEEEEEEEEECTTCC--HHHHTTHHHHHHHTTTCCBSSSCHHHHHHHHHHHCSEEEEEEEEECCCB
T ss_pred cCCeEEEEEECCCCCeEEEEEEEECCCCC--HHHHhhHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCceEEEeeeecccc
Confidence 489999966554 6799999999999644 4577888999998866 99999999999999999999888864
Q ss_pred ----------cceEEEEEecccCCHHHHHHHHHHhhcCCCCChHH-HHHHHHHHHHHhHh-hhCChHHHHHHHHHHHhc-
Q 010710 154 ----------REQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWE-VNEELRKLKSELGE-LHNNPQGLLLEAIHSTGY- 220 (503)
Q Consensus 154 ----------~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~-~~~~k~~~~~e~~~-~~~~p~~~~~~~~~~~~~- 220 (503)
...+.+++.++.++++.+++++.+++.+|+|++.+ +++.+.+.+..+.+ ...++..++...+.+.+.
T Consensus 802 ~~~~~~~~~~~~~~~vs~kaL~~n~~~~~~Ll~eiL~~~~F~d~eRlk~ll~~~ks~le~~i~~sGH~~A~~ra~s~~s~ 881 (1193)
T 3s5m_A 802 HLNVTDKYNAQALFNLEMHVLSHKCNDALNIALEAVKESDFSNKKKVIDILKRKINGMKTTFSEKGYAILMKYVKAHLNS 881 (1193)
T ss_dssp TTBCCCTTCCEEEEEEEEEEEGGGHHHHHHHHHHHHHSBCTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTTTTCH
T ss_pred cccccccccccceEEEEEEEhhhcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHhcCc
Confidence 34578999999999999999999999999999864 77777777777664 334455555555544443
Q ss_pred CCCCCCCCCCChhh--------------hcCCCHHHHHHHHHhhcCCCCeEEEEeC-CC-hHHHHHHHHhhcCCCCC---
Q 010710 221 AGALGNPLLAPESA--------------LNRLDGTILEEIVAENFTAPRMVLAASG-VD-LDELLPIAEPLLSDLPR--- 281 (503)
Q Consensus 221 ~~~~~~~~~~~~~~--------------l~~l~~~~l~~f~~~~~~~~~~~l~i~G-~~-~~~l~~l~~~~~~~l~~--- 281 (503)
.+++.....| .+. ++.+ .++|+++++++|+++++++.++| .+ .+++.+.++++++.|+.
T Consensus 882 ~~~~~e~~~G-l~~~~fl~~l~~~~e~~~~~l-~~~L~~i~~~if~~~nl~vsvtg~~~~~~~~~~~l~~~l~~l~~~~~ 959 (1193)
T 3s5m_A 882 KHYAHNIIYG-YENYLKLQEQLELAENDFKTL-ENILVRIRNKIFNKKNLMVSVTSDYGALKHLFVNSNESLKNLVSYFE 959 (1193)
T ss_dssp HHHHHHHHHS-HHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHSCSTTEEEEEEECGGGTHHHHTTTHHHHHHHHHHHH
T ss_pred chhhhhhhCC-hHHHHHHHHHHHhhHhhHHHH-HHHHHHHHHHHcCCCCeEEEEEeChhhHHHHHHHHHHHHHhhhhccc
Confidence 3322221111 112 2223 67999999999999999999999 65 47777666666554431
Q ss_pred -CCC----------CC-CC--------CCCc-c--CCceEEcCCCCceEEEEEeeeCCCCCCCchhHHHHHHHHhcCCCC
Q 010710 282 -LPP----------PT-EP--------KSVY-I--GGDYRQQADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGG 338 (503)
Q Consensus 282 -~~~----------~~-~~--------~~~~-~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~ 338 (503)
... .. .. ...+ . .....+..+.++.++..+++... ..+++++++.|++.|||+
T Consensus 960 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~p~~v~yv~~~~~~~~--~~~~d~~al~Vl~~iLg~-- 1035 (1193)
T 3s5m_A 960 ENDKYINDMQNKVNDPTVMGWNEEIKSKKLFDEEKVKKEFFVLPTFVNSVSMSGILFK--PGEYLDPSFTVIVAALKN-- 1035 (1193)
T ss_dssp HGGGGSCCCCSSSCCCCCCCHHHHHHHTTCCCTTCCEEEEEECCCSSBEEEEEEECSC--TTCBCCTHHHHHHHHHHH--
T ss_pred cccccccccccccccccccccccccccccccccccccceeEecCCcceEEEEEecCCC--CCCCchHHHHHHHHHHCc--
Confidence 000 00 00 0000 1 11223446788889999888776 788999999999999995
Q ss_pred CCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeeccccCcceEEEEEEeCcchHHHHHHHHHHHHHHhhC--CCCCCHHHH
Q 010710 339 SFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIAT--PKQVTQVQL 416 (503)
Q Consensus 339 ~~~~gg~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~~~~~~f~i~~~~~p~~~~~~~~~~~~~l~~~~~--~g~i~~~el 416 (503)
++||++||++.| +|+++++.. ..|.|.++...+|. ..+.++.+.+++..+.+ +| +|++||
T Consensus 1036 ------------~~L~~eIREkgG-AYg~~s~~~---~~G~f~~~syrdp~-~~~tl~~~~~~~~~l~~~~~~-~teeEL 1097 (1193)
T 3s5m_A 1036 ------------SYLWDTVRGLNG-AYGVFADIE---YDGSVVFLSARDPN-LEKTLATFRESAKGLRKMADT-MTENDL 1097 (1193)
T ss_dssp ------------THHHHHHTTTTC-CSEEEEEEC---TTSEEEEEEESBSC-SHHHHHHHHTHHHHHHHHHHH-CCHHHH
T ss_pred ------------cHHHHHHHhcCC-eeEEEEecc---CCCcEEEEEEeCCC-HHHHHHHHHHHHHHHHhhcCC-CCHHHH
Confidence 799999999876 999999965 56788888888884 77888888777776665 56 999999
Q ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHHhCCcC-CHHHHHHHHccCCHHHHHHHHHHhhcC----CceEEEE
Q 010710 417 NRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERK-SVDQFLSVLEHITLDDITNIAQKIISS----PLTMASY 486 (503)
Q Consensus 417 ~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~i~~vT~~di~~~a~~~l~~----~~~~~~~ 486 (503)
+++|..+++++. ...++...+.......+ +|.+. .++++.+.|.+||++||+++|++|+.. ..+++++
T Consensus 1098 ~~ak~~~~~~~d-~p~~p~~~a~~~~~~~~-~Gl~~d~~~~~~~~I~aVT~edv~~vA~~~~~~l~~~~~~~vvv 1170 (1193)
T 3s5m_A 1098 LRYIINTIGTID-KPRRGIELSKLSFLRLI-SNESEQDRVEFRKRIMNTKKEDFYKFADLLESKVNEFEKNIVII 1170 (1193)
T ss_dssp HHHHHHHHHHHS-CCCCTHHHHHHHHHHHH-TTCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHTHHHHTTEEEEE
T ss_pred HHHHHHHHhccc-ccCChHHHHHHHHHHHH-cCcCHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcccCceEEEE
Confidence 999999999965 55676667766665544 66654 578999999999999999999999976 4566665
No 22
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=99.90 E-value=1.5e-22 Score=183.50 Aligned_cols=172 Identities=15% Similarity=0.125 Sum_probs=152.1
Q ss_pred EcCCCCceEEEEEeeeCCCCCCCchhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeeccccCcc
Q 010710 299 QQADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTG 378 (503)
Q Consensus 299 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~~~~~gg~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~~~~~ 378 (503)
+..+.+++++.++|++|+ .++++..++.||+.+|++| ++++||++||++ |++|+++++...+.+.|
T Consensus 18 ~~~~~~~~~v~~~~~~~~--~~~~d~~al~vl~~iLggg-----------~sSrL~~~lre~-gl~y~~~~~~~~~~~~g 83 (197)
T 3ih6_A 18 LRRAGGTPLVAAMYHLPA--AGSPDFVGLDLAATILADT-----------PSSRLYHALVPT-KLASGVFGFTMDQLDPG 83 (197)
T ss_dssp ----CCSCEEEEEEECCC--TTSTTHHHHHHHHHHHHSS-----------TTSHHHHHHTTT-TSCSEEEEEEETTSSSC
T ss_pred EECCCCCceEEEEEecCC--CCCCcHHHHHHHHHHHcCC-----------CCchHHHHHHhc-CceEEEEeccccccCCe
Confidence 445578999999999997 6789999999999999975 349999999986 99999999887777899
Q ss_pred eEEEEEEeCcc-hHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhCCcCCHHHH
Q 010710 379 LFGIYACTGSD-FVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERKSVDQF 457 (503)
Q Consensus 379 ~f~i~~~~~p~-~~~~~~~~~~~~l~~~~~~g~i~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 457 (503)
.|.+++.+.|+ +.+++++.+.+++.++.++| ++++||+++|+.++..+....+++..++..++.+++ .|.+....++
T Consensus 84 ~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~~-it~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~-~g~~~~~~~~ 161 (197)
T 3ih6_A 84 LAMFGAQLQPGMDQDKALQTLTATLESLSSKP-FSQEELERARSKWLTAWQQTYADPEKVGVALSEAIA-SGDWRLFFLQ 161 (197)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHHCTTTSC-CCHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHH-TTCTTHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH-cCCHHHHHHH
Confidence 99999999999 59999999999999999887 999999999999999999999999999999998877 4766667889
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCceEEEE
Q 010710 458 LSVLEHITLDDITNIAQKIISSPLTMASY 486 (503)
Q Consensus 458 ~~~i~~vT~~di~~~a~~~l~~~~~~~~~ 486 (503)
.+.|++||++||++++++||.++..++++
T Consensus 162 ~~~i~~vT~~dv~~~a~~~l~~~~~~~~~ 190 (197)
T 3ih6_A 162 RDRVREAKLDDVQRAAVAYLVRSNRTEGR 190 (197)
T ss_dssp HHHHHTCCHHHHHHHHHHHSSGGGCEEEE
T ss_pred HHHHHhCCHHHHHHHHHHhCCccCeEEEE
Confidence 99999999999999999999866555554
No 23
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=98.23 E-value=3.1e-05 Score=68.92 Aligned_cols=161 Identities=4% Similarity=-0.044 Sum_probs=111.9
Q ss_pred CCeEEEEEEEeccccCCCCCCCcHHHHHHHHHcccCCCCCHHHHHHHHHHcCCeeeEeec------cceEEEEEecccC-
Q 010710 94 SPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASAS------REQMGYSFDALKT- 166 (503)
Q Consensus 94 ~~~~~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~------~~~~~~~~~~~~~- 166 (503)
.+...+.+.+.++....+ ......++..++..|.. ..|.+.+...|.-++++.. ...+.+.+.+.++
T Consensus 22 ~~~~~v~~~~~~~~~~~~--d~~al~vl~~iLggg~s----SrL~~~lre~gl~y~~~~~~~~~~~~g~~~i~~~~~~~~ 95 (197)
T 3ih6_A 22 GGTPLVAAMYHLPAAGSP--DFVGLDLAATILADTPS----SRLYHALVPTKLASGVFGFTMDQLDPGLAMFGAQLQPGM 95 (197)
T ss_dssp CCSCEEEEEEECCCTTST--THHHHHHHHHHHHSSTT----SHHHHHHTTTTSCSEEEEEEETTSSSCEEEEEEECCTTS
T ss_pred CCCceEEEEEecCCCCCC--cHHHHHHHHHHHcCCCC----chHHHHHHhcCceEEEEeccccccCCeEEEEEEEECCCC
Confidence 455666666777655432 45567778888865432 3444444444544444322 2346667777666
Q ss_pred CHHHHHHHHHHhhcC---CCCChHHHHHHHHHHHHHhHhhhCChHHHHHHHHHHHhcCCCCCCCCCCChhhhcCCCHHHH
Q 010710 167 YVPEMVELLVDCVRN---PVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDGTIL 243 (503)
Q Consensus 167 ~l~~~l~ll~~~~~~---p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~l 243 (503)
+++.+++.+...+.+ -.++++++++.|..+...+.....++...+........++ ... ......+.|+++|.+++
T Consensus 96 ~~~~~~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~g-~~~-~~~~~~~~i~~vT~~dv 173 (197)
T 3ih6_A 96 DQDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYADPEKVGVALSEAIASG-DWR-LFFLQRDRVREAKLDDV 173 (197)
T ss_dssp CHHHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHTT-CTT-HHHHHHHHHHTCCHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHcC-CHH-HHHHHHHHHHhCCHHHH
Confidence 699888888777654 3589999999999999999888888888877776665542 111 11223578999999999
Q ss_pred HHHHHhhcCCCCeEEEEeC
Q 010710 244 EEIVAENFTAPRMVLAASG 262 (503)
Q Consensus 244 ~~f~~~~~~~~~~~l~i~G 262 (503)
.++.+++|.+.+.+++++|
T Consensus 174 ~~~a~~~l~~~~~~~~~~~ 192 (197)
T 3ih6_A 174 QRAAVAYLVRSNRTEGRYI 192 (197)
T ss_dssp HHHHHHHSSGGGCEEEEEC
T ss_pred HHHHHHhCCccCeEEEEEe
Confidence 9999999999999988888
No 24
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=97.80 E-value=0.00041 Score=69.51 Aligned_cols=175 Identities=13% Similarity=0.101 Sum_probs=113.3
Q ss_pred EEEEecCCCCeEEEEEEEeccccCCCCCCCcHHHHHHHHHcccC----CC-CCHHHHHHHHHHcCCeeeEeec------c
Q 010710 86 RIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKST----KN-RSHLRIVREVEAIGGSILASAS------R 154 (503)
Q Consensus 86 ~v~~~~~~~~~~~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~gt----~~-~s~~~l~~~l~~~g~~~~~~~~------~ 154 (503)
++...+.+.+...+.+.+.++.... .......++.+++..+. ++ .....+.+.+...|+.++++.. .
T Consensus 222 ~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~vl~~iL~~~~~~~~~~~~~~s~L~~~lRe~gl~y~v~~~~~~~~~~ 299 (431)
T 3cx5_A 222 EVRLRDDTLPKAWISLAVEGEPVNS--PNYFVAKLAAQIFGSYNAFEPASRLQGIKLLDNIQEYQLCDNFNHFSLSYKDS 299 (431)
T ss_dssp EEEEECTTSSSEEEEEEEECCCTTC--TTHHHHHHHHHHHCEEETTCTTGGGSSCTHHHHHHTTTCCSEEEEEEEECSSC
T ss_pred eEEEcCCCCCceEEEEEeecCCCCC--ccHHHHHHHHHHcCCCccCCCCccccccHHHHHHHhcCceeeEeEeecccCCC
Confidence 3333333445677777777655433 24455677888885421 00 0112344444445554444332 2
Q ss_pred ceEEEEEeccc-CCHHHHHHHHHHhhcCC--CCChHHHHHHHHHHHHHhHh--hhCChHHHHHHHHHHHhc-CCCCCCCC
Q 010710 155 EQMGYSFDALK-TYVPEMVELLVDCVRNP--VFLDWEVNEELRKLKSELGE--LHNNPQGLLLEAIHSTGY-AGALGNPL 228 (503)
Q Consensus 155 ~~~~~~~~~~~-~~l~~~l~ll~~~~~~p--~f~~~~~~~~k~~~~~e~~~--~~~~p~~~~~~~~~~~~~-~~~~~~~~ 228 (503)
..+.+.+.+.+ ++++++++.+.+.+..- .+++++|++.|..+...+.. ...++...+.......++ +.+.. .
T Consensus 300 g~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~ 377 (431)
T 3cx5_A 300 GLWGFSTATRNVTMIDDLIHFTLKQWNRLTISVTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLS--L 377 (431)
T ss_dssp EEEEEEEEESCTTCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSSCCC--H
T ss_pred ceEEEEEeeCchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhcCCCCC--H
Confidence 34566677767 78888777776544331 59999999999999998888 778888877766665443 33322 1
Q ss_pred CCChhhhcCCCHHHHHHHHHhhcCCCCeEEEEeC-CC
Q 010710 229 LAPESALNRLDGTILEEIVAENFTAPRMVLAASG-VD 264 (503)
Q Consensus 229 ~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-~~ 264 (503)
....+.++++|.+++.++.++++.+.+.+++++| .+
T Consensus 378 ~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~v~g~~~ 414 (431)
T 3cx5_A 378 GEAFKKIDAITVKDVKAWAGKRLWDQDIAIAGTGQIE 414 (431)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTTTCCCEEEEEESCT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHcccCCcEEEEEcchh
Confidence 2234778999999999999999998899999999 54
No 25
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=97.78 E-value=0.00028 Score=70.65 Aligned_cols=175 Identities=10% Similarity=0.040 Sum_probs=117.6
Q ss_pred CCceEEEEEeeeCCCCCCC--chhHHHHHHHHhcCCCCCCCCCCCCCCcc-cHHHHHHHhhcCCeEEEEeeeccccCcce
Q 010710 303 SPETHIALAFEVPGGWLKD--KEAIILTVLQVLMGGGGSFSAGGPGKGMH-TRLYLRVLNEYQQIQSFSAFNSIFNNTGL 379 (503)
Q Consensus 303 ~~~~~v~~~~~~~~~~~~~--~~~~~~~vl~~lL~~~~~~~~gg~g~g~~-s~L~~~lR~~~~~~Y~~~a~~~~~~~~~~ 379 (503)
.+...+.+.|..+. .++ .......++.+++..|.. .+. ..+.+.+ +..|....++... -.
T Consensus 21 ~~~~~~~l~~~~Gs--~~e~~~~~G~ah~leh~lf~gt~--------~~~~~~~~~~l-~~~G~~~na~t~~------d~ 83 (421)
T 3hdi_A 21 VRSVSIGIWVGTGS--RYESAEENGISHFLEHMFFKGTN--------TRSAQEIAEFF-DSIGGQVNAFTSK------EY 83 (421)
T ss_dssp CSEEEEEEEESCCG--GGCCGGGTTHHHHHHHHTTSBBS--------SSBHHHHHHHH-HTTTSCEEEEECS------SC
T ss_pred CCEEEEEEEEcccc--CCCCCCCCcHHHHHHHHhcCCCC--------CCCHHHHHHHH-HHhCCceeeeecc------ce
Confidence 45667778887764 443 345677788888875422 011 2344444 4555444333321 12
Q ss_pred EEEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhCCcC--CHHHH
Q 010710 380 FGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERK--SVDQF 457 (503)
Q Consensus 380 f~i~~~~~p~~~~~~~~~~~~~l~~~~~~g~i~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~ 457 (503)
..+++.+.+++.+++++.+.+.+... .++++++++.|..++..+....+++...+.......+..+.+. +.--.
T Consensus 84 t~~~~~~~~~~l~~~l~ll~d~~~~p----~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~ 159 (421)
T 3hdi_A 84 TCYYAKVLDDHAGQAIDTLSDMFFHS----TFQKEELEKERKVVFEEIKMVDDTPDDIVHDLLSSATYGKHSLGYPILGT 159 (421)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHHHSB----CCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTSGGGSCTTCC
T ss_pred EEEEEEecHHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCcCC
Confidence 45667777888888888777766553 4999999999999999999888888887766665555444332 22224
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCceEEEEccCCCCHHHHHhHh
Q 010710 458 LSVLEHITLDDITNIAQKIISSPLTMASYVINVPGYESVSSKF 500 (503)
Q Consensus 458 ~~~i~~vT~~di~~~a~~~l~~~~~~~~~~~~~p~~~~~~~~~ 500 (503)
.+.|+++|.+|++++.++++.+....++++.++. +++.+.+
T Consensus 160 ~~~l~~it~~~l~~f~~~~y~p~n~~l~v~Gd~~--~~~~~~v 200 (421)
T 3hdi_A 160 VETLNSFNEGMLRHYMDRFYTGDYVVISVAGNVH--DELIDKI 200 (421)
T ss_dssp HHHHHHCCHHHHHHHHHHHSSTTTEEEEEEESCC--HHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHhcCcccEEEEEEeCCC--HHHHHHH
Confidence 5678999999999999999998877777766676 5555443
No 26
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=97.75 E-value=0.00099 Score=66.58 Aligned_cols=180 Identities=10% Similarity=0.055 Sum_probs=112.5
Q ss_pred CCceEEEEEeeeCCCCCCCchhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeeccccCcceEEE
Q 010710 303 SPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGI 382 (503)
Q Consensus 303 ~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~~~~~gg~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~~~~~~f~i 382 (503)
.+...+.+.|.++.............++.+++..|.. ..+| .+...-+.+..+..|..+++... . -...+
T Consensus 23 ~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~Gt~--~~~~--~~~~~~~~~~l~~~G~~~~a~t~--~----~~t~~ 92 (424)
T 3amj_B 23 LPMLDVQVDFDAGSAREPADQVGVASMTASLMDAGTG--SGKS--ALDENAIADRLADIGARLGGGAE--A----DRASF 92 (424)
T ss_dssp SSEEEEEEEESCSGGGSCTTSTTHHHHHHHTGGGEEC--STTS--CEEHHHHHHHHHHTTCEEEEEEC--S----SCEEE
T ss_pred CCEEEEEEEEecCCccCCCccchHHHHHHHHHHhccC--CCcc--CCCHHHHHHHHHHhCCEEEeecC--C----CeEEE
Confidence 4566777777776511123456778888888864210 0000 12222334445555654444322 1 13556
Q ss_pred EEEeCcchH--HHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhCCcCC-HHHHHH
Q 010710 383 YACTGSDFV--SKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERKS-VDQFLS 459 (503)
Q Consensus 383 ~~~~~p~~~--~~~~~~~~~~l~~~~~~g~i~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~ 459 (503)
++.+.+++. ..+++.+.+.+... .+++++|++.|..++..+....+++...+.......+..+.+.. .. ..+
T Consensus 93 ~~~~~~~~~~l~~~l~ll~~~~~~p----~f~~~~~~~e~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~-~~~ 167 (424)
T 3amj_B 93 SLRVLSSPAERNSALTILRDILAHP----TFPAPVLERERARAIAGLREAQTQPGSILGRRFTELAYGKHPYGHVS-SVA 167 (424)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHCB----CCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTSGGGCCC-CHH
T ss_pred EEEEeccccChhHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHhcCCCCCCCCCC-CHH
Confidence 677777776 77777766655443 49999999999999999988777887777665555554444321 11 456
Q ss_pred HHccCCHHHHHHHHHHhhcCCceEEEEccCCCCHHHHHh
Q 010710 460 VLEHITLDDITNIAQKIISSPLTMASYVINVPGYESVSS 498 (503)
Q Consensus 460 ~i~~vT~~di~~~a~~~l~~~~~~~~~~~~~p~~~~~~~ 498 (503)
.|+++|.+|++++.++++.+....++++.++.. +++.+
T Consensus 168 ~l~~it~~~l~~f~~~~y~~~~~~l~v~Gd~~~-~~~~~ 205 (424)
T 3amj_B 168 TLQKISRDQLVSFHRTHYVARTAVVTLVGDITR-AEAET 205 (424)
T ss_dssp HHHHCCHHHHHHHHHHHSCTTSCEEEEEESCCH-HHHHH
T ss_pred HHHhCCHHHHHHHHHHhcCCCceEEEEEeCCCH-HHHHH
Confidence 788999999999999999877666666554443 44443
No 27
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=97.75 E-value=0.0013 Score=66.15 Aligned_cols=166 Identities=11% Similarity=-0.008 Sum_probs=111.9
Q ss_pred CCCeEEEEEEEeccccCCCCCCCcHHHHHHHHHcc-----cCCCCCHHHHHHHHH-HcCCeeeEee------ccceEEEE
Q 010710 93 VSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFK-----STKNRSHLRIVREVE-AIGGSILASA------SREQMGYS 160 (503)
Q Consensus 93 ~~~~~~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~-----gt~~~s~~~l~~~l~-~~g~~~~~~~------~~~~~~~~ 160 (503)
+.+...+.+.+++..... .......++..++.. |.+......|.+.+. ..|+-++++. ....+.+.
T Consensus 243 ~~~~~~v~~~~~~~~~~~--~~~~~l~vl~~iLg~~~r~~~~g~~~~s~L~~~lre~~glay~~~~~~~~~~~~g~~~i~ 320 (443)
T 1hr6_B 243 TLPTTHIAIALEGVSWSA--PDYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYADSGLWGMY 320 (443)
T ss_dssp TCSEEEEEEEEECCCTTC--TTHHHHHHHHHHHCEEETTTBCSSSSCCHHHHHHHSTTCSCSEEEEEEEECSSCEEEEEE
T ss_pred CccceEEEEEEecCCCCC--ccHHHHHHHHHHhCCCcccCCCCCCcccHHHHHHHHHcCCeEEEEeeecCCCCceEEEEE
Confidence 456777888787764333 244556678888742 111122344666665 4454333322 22345666
Q ss_pred Eecc--cCCHHHHHHHHHHhh---cCCCCChHHHHHHHHHHHHHhHhhhCChHHHHHHHHHHHh-cCCCCCCCCCCChhh
Q 010710 161 FDAL--KTYVPEMVELLVDCV---RNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTG-YAGALGNPLLAPESA 234 (503)
Q Consensus 161 ~~~~--~~~l~~~l~ll~~~~---~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 234 (503)
+.+. +++++++++.+.+.+ .+-.++++++++.|..+...+.....++...+.......+ ++.+.. .....+.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~ 398 (443)
T 1hr6_B 321 IVTDSNEHNVRLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLS--PEEVFEQ 398 (443)
T ss_dssp EEEETTTCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHSSCCC--HHHHHHH
T ss_pred EEecCChhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCcCC--HHHHHHH
Confidence 6676 778888888877655 4455999999999999999988777788776665555543 333322 1223477
Q ss_pred hcCCCHHHHHHHHHhhcCCCCeEEEEeC
Q 010710 235 LNRLDGTILEEIVAENFTAPRMVLAASG 262 (503)
Q Consensus 235 l~~l~~~~l~~f~~~~~~~~~~~l~i~G 262 (503)
|.++|.+++.++.++++.+.+.+++++|
T Consensus 399 i~~vt~~dv~~~a~~~l~~~~~~~~v~g 426 (443)
T 1hr6_B 399 VDKITKDDIIMWANYRLQNKPVSMVALG 426 (443)
T ss_dssp HHTCCHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred HHhCCHHHHHHHHHHHhccCCcEEEEEC
Confidence 8999999999999999998999999999
No 28
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=97.74 E-value=0.00037 Score=69.44 Aligned_cols=159 Identities=13% Similarity=0.010 Sum_probs=111.7
Q ss_pred CeEEEEEEEeccccCCCCCCCcHHHHHHHHHcccCCCCCHHHHHHHHHHcCCeeeEeecc------ceEEEEEecccCCH
Q 010710 95 PAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASR------EQMGYSFDALKTYV 168 (503)
Q Consensus 95 ~~~~i~l~~~~G~~~e~~~~~g~a~l~~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~------~~~~~~~~~~~~~l 168 (503)
....+.+.+.+.....+ ......++..++..|. ...|.+.+...|..++++... ..+.+.+.+.+++.
T Consensus 234 ~q~~~~~~~~~~~~~~~--d~~~l~vl~~iLgg~~----~srL~~~lre~gl~y~~~s~~~~~~~~g~~~i~~~~~~~~~ 307 (406)
T 3eoq_A 234 RALYLVALFPGVAYQEE--ARFPGQVLAHLLGEEG----SGRLHFALVDKGLAEVASFGLEEADRAGTFHAYVQADPARK 307 (406)
T ss_dssp SSEEEEEEEECCCTTCT--THHHHHHHHHHHHCTT----TSHHHHHTTTTTSEEEEEEEEEECSSCEEEEEEEEECGGGH
T ss_pred cceEEEEEecCCCCCCc--hHHHHHHHHHHhCCCc----chHHHHHHHHcCCeeEEEEEecccCCceEEEEEEEeCcchH
Confidence 56666666776554433 3455667777775432 234555554466544444321 34566667777888
Q ss_pred HHHHHHHHHhhcCC---CCChHHHHHHHHHHHHHhHhhhCChHHHHHHHHHHHhc-CCCCCCCCCCChhhhcCCCHHHHH
Q 010710 169 PEMVELLVDCVRNP---VFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLLAPESALNRLDGTILE 244 (503)
Q Consensus 169 ~~~l~ll~~~~~~p---~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~~l~ 244 (503)
+++++.+.+.+..- .++++++++.|..+...+.....++...+.......++ ..+.. .....+.|+++|.+++.
T Consensus 308 ~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~vt~~dv~ 385 (406)
T 3eoq_A 308 GEVLAVLQEELDRLGREGVGEEEVERAKTPLATGLVFAGETPMQRLFHLGMEYLYTGRYLS--LEEVKARVQRVTSREVN 385 (406)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSSCCC--HHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHhCCHHHHH
Confidence 88888887766543 59999999999999999988888888888777776665 32221 12234788999999999
Q ss_pred HHHHhhcCCCCeEEEEeC
Q 010710 245 EIVAENFTAPRMVLAASG 262 (503)
Q Consensus 245 ~f~~~~~~~~~~~l~i~G 262 (503)
++.++++.+.++ ++++|
T Consensus 386 ~~a~~~l~~~~~-~~vvG 402 (406)
T 3eoq_A 386 ALLERGFLEKGL-YYLVL 402 (406)
T ss_dssp HHHHTTTTTSCE-EEEEE
T ss_pred HHHHHhcCcccE-EEEEC
Confidence 999999999998 89998
No 29
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=97.71 E-value=0.0013 Score=63.94 Aligned_cols=174 Identities=12% Similarity=-0.008 Sum_probs=114.4
Q ss_pred CCceEEEEEeeeCCCCCCCchhHHHHHHHHhcCCCCCCCCCCCCCCcc-cHHHHHHHhhcCCeEEEEeeeccccCcceEE
Q 010710 303 SPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMH-TRLYLRVLNEYQQIQSFSAFNSIFNNTGLFG 381 (503)
Q Consensus 303 ~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~~~~~gg~g~g~~-s~L~~~lR~~~~~~Y~~~a~~~~~~~~~~f~ 381 (503)
.+...+.+.+.++. ..........++.+++..|.. + +. ..+.+.+ +..|..++++.. .-.+.
T Consensus 10 ~~~v~~~~~~~~Gs--~~e~~~G~ah~leh~lf~Gt~-------~-~~~~~l~~~l-~~~G~~~na~t~------~~~t~ 72 (352)
T 3cx5_B 10 TKISTLAVKVHGGS--RYATKDGVAHLLNRFNFQNTN-------T-RSALKLVRES-ELLGGTFKSTLD------REYIT 72 (352)
T ss_dssp CSEEEEEEEESCSG--GGCSSTTHHHHHHHHTTSCBS-------S-SCHHHHHHHH-HHHTCEEEEEEC------SSCEE
T ss_pred CceEEEEEEEeeec--cCCCcccHHHHHHHHhccCcC-------C-CCHHHHHHHH-HHhCCeEEEEEc------cceEE
Confidence 45555666666654 445566788888888865321 1 11 2344444 455654433332 22456
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHH-HHHHHHHHHHHHccCChHHHHHHHHHHHHHhCCcCCHHHHHHH
Q 010710 382 IYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLN-RAKEATKSAVLMNLESRVIVSEDIGRQILTYGERKSVDQFLSV 460 (503)
Q Consensus 382 i~~~~~p~~~~~~~~~~~~~l~~~~~~g~i~~~el~-~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 460 (503)
+++.+.+++.+.+++.+.+.+... .+++++|+ +.|..++..+....+++...+.......+. +.+.......+.
T Consensus 73 ~~~~~~~~~l~~~l~ll~d~~~~p----~f~~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~-~~p~~~~~~~~~ 147 (352)
T 3cx5_B 73 LKATFLKDDLPYYVNALADVLYKT----AFKPHELTESVLPAARYDYAVAEQCPVKSAEDQLYAITF-RKGLGNPLLYDG 147 (352)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHHB----CCCHHHHHHTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-TTTTTSCSSCCS
T ss_pred EEEEechhhHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCCCCccchhh
Confidence 677788888888888887777654 49999998 999999999988777887776555544443 332111112567
Q ss_pred HccCCHHHHHHHHHHhhcCCceEEEEccCCCCHHHHHhHh
Q 010710 461 LEHITLDDITNIAQKIISSPLTMASYVINVPGYESVSSKF 500 (503)
Q Consensus 461 i~~vT~~di~~~a~~~l~~~~~~~~~~~~~p~~~~~~~~~ 500 (503)
|+++|.+|++++.++++.+...+++++. + +.+++.+.+
T Consensus 148 l~~it~~~l~~f~~~~y~~~n~~l~v~G-~-~~~~~~~~i 185 (352)
T 3cx5_B 148 VERVSLQDIKDFADKVYTKENLEVSGEN-V-VEADLKRFV 185 (352)
T ss_dssp SSCCCHHHHHHHHHHHCCGGGEEEEEES-S-CHHHHHHHH
T ss_pred hccCCHHHHHHHHHHhCCcCcEEEEEeC-C-CHHHHHHHH
Confidence 9999999999999999987766655554 4 667766554
No 30
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=97.65 E-value=0.0034 Score=63.16 Aligned_cols=178 Identities=13% Similarity=0.091 Sum_probs=115.2
Q ss_pred CCCceEEEEEeeeCCCCCCC--chhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeeccccCcce
Q 010710 302 DSPETHIALAFEVPGGWLKD--KEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGL 379 (503)
Q Consensus 302 ~~~~~~v~~~~~~~~~~~~~--~~~~~~~vl~~lL~~~~~~~~gg~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~~~~~~ 379 (503)
+.+...+.+.|..+. ..+ .......++.+++..|.. .-|. .-+.+. .+..|.. +.++... + .
T Consensus 31 ~~~~~~~~l~~~~Gs--~~e~~~~~Glahllehmlf~GT~---~~~~----~~~~~~-l~~~G~~--~na~t~~--d--~ 94 (446)
T 1pp9_A 31 SQPTCTVGVWIDAGS--RYESEKNNGAGYFVEHLAFKGTK---NRPG----NALEKE-VESMGAH--LNAYSTR--E--H 94 (446)
T ss_dssp SCSEEEEEEEESCSG--GGCCTTTTTHHHHHHHHTTSCBS---SSTT----THHHHH-HHHTTCE--EEEEECS--S--C
T ss_pred CCCEEEEEEEEcccc--CCCCCCCCcHHHHHHHHhcCCCC---CCCH----HHHHHH-HHHcCCE--EEEEEcC--C--e
Confidence 345566667777664 333 356677788888875421 1111 234333 3445643 4444322 1 2
Q ss_pred EEEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhCCcC--CHHHH
Q 010710 380 FGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERK--SVDQF 457 (503)
Q Consensus 380 f~i~~~~~p~~~~~~~~~~~~~l~~~~~~g~i~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~ 457 (503)
..+++.+..++..++++.+.+.+... .+++++|++.|..++..+....+++..++.......+..+.+. +..-.
T Consensus 95 t~~~~~~~~~~l~~~l~ll~d~~~~p----~f~~~~~~~ek~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 170 (446)
T 1pp9_A 95 TAYYIKALSKDLPKAVELLADIVQNC----SLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGP 170 (446)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHHHHB----CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCC
T ss_pred EEEEEEecHHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCCCCCCcCC
Confidence 45677777888888888888777664 4999999999999999998887887776655544444333321 11223
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCceEEEEccCCCCHHHHHhHh
Q 010710 458 LSVLEHITLDDITNIAQKIISSPLTMASYVINVPGYESVSSKF 500 (503)
Q Consensus 458 ~~~i~~vT~~di~~~a~~~l~~~~~~~~~~~~~p~~~~~~~~~ 500 (503)
.+.|+++|.+|++++.++++.++..+++++.++. .+++.+.+
T Consensus 171 ~~~l~~~~~~~l~~f~~~~y~p~n~~l~v~Gd~~-~~~~~~~i 212 (446)
T 1pp9_A 171 SENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLE-HRQLLDLA 212 (446)
T ss_dssp HHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCC-HHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHhccCCCCEEEEEEcCCC-HHHHHHHH
Confidence 5678889999999999999987777777655555 35555443
No 31
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=97.62 E-value=0.0018 Score=64.86 Aligned_cols=175 Identities=11% Similarity=0.015 Sum_probs=111.8
Q ss_pred CCceEEEEEeeeCCCCCCC-chhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeeccccCcceEE
Q 010710 303 SPETHIALAFEVPGGWLKD-KEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFG 381 (503)
Q Consensus 303 ~~~~~v~~~~~~~~~~~~~-~~~~~~~vl~~lL~~~~~~~~gg~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~~~~~~f~ 381 (503)
.+...+.+.|.++. ... .......++.+++..|.. + +...=+.+..+..|..++++... ..+.
T Consensus 33 ~~~~~~~~~~~~Gs--~~e~~~~g~a~lle~ll~~gt~-------~-~~~~~l~~~l~~~g~~~~a~t~~------~~~~ 96 (434)
T 3gwb_A 33 LPMFDLRLIFAAGS--SQDGNAPGVALLTNAMLNEGVA-------G-KDVGAIAQGFEGLGADFGNGAYK------DMAV 96 (434)
T ss_dssp SSEEEEEEEESCSG--GGCTTSTTHHHHHHHHGGGEET-------T-EEHHHHHHHHHTTTCEEEEEECS------SCEE
T ss_pred CCEEEEEEEEeccc--ccCCcchhHHHHHHHHHhcCcc-------c-CCHHHHHHHHHHhCCEEEeeecC------CeEE
Confidence 46677778887775 333 445566778888864321 1 11121233444456554443331 2345
Q ss_pred EEEEeCcch--HHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhCCcCC--HHHH
Q 010710 382 IYACTGSDF--VSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERKS--VDQF 457 (503)
Q Consensus 382 i~~~~~p~~--~~~~~~~~~~~l~~~~~~g~i~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~ 457 (503)
+++.+.+++ ...+++.+.+.+... .+++++|++.|..++..+.....++...+.......+..+.+.. ..-.
T Consensus 97 ~~~~~~~~~~~l~~~l~ll~~~~~~p----~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~ 172 (434)
T 3gwb_A 97 ASLRSLSAVDKREPALKLFAEVVGKP----TFPADSLARIKNQMLAGFEYQKQNPGKLASLELMKRLYGTHPYAHASDGD 172 (434)
T ss_dssp EEEEEECSHHHHHHHHHHHHHHHHSC----CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSTTSSCTTCC
T ss_pred EEEEecCccccHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 566666666 777777776665443 59999999999999999998888888877665555554443321 1123
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCceEEEEccCCCCHHHHHh
Q 010710 458 LSVLEHITLDDITNIAQKIISSPLTMASYVINVPGYESVSS 498 (503)
Q Consensus 458 ~~~i~~vT~~di~~~a~~~l~~~~~~~~~~~~~p~~~~~~~ 498 (503)
.+.|+++|.+|++++.++++.+....++++.++.. +++.+
T Consensus 173 ~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~~~~-~~~~~ 212 (434)
T 3gwb_A 173 AKSIPPITLAQLKAFHAKAYAAGNVVIALVGDLSR-SDAEA 212 (434)
T ss_dssp TTTTTTCCHHHHHHHHHHHSCGGGEEEEEEESCCH-HHHHH
T ss_pred HHHHHhCCHHHHHHHHHHhcCcCCeEEEEEcCCCH-HHHHH
Confidence 56789999999999999999866666666555533 44443
No 32
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=97.60 E-value=0.0019 Score=64.82 Aligned_cols=176 Identities=8% Similarity=-0.022 Sum_probs=112.8
Q ss_pred CCceEEEEEeeeCCCCCCCchhHHHHHHHHhcCCCCCCCCCCCCCCcc-cHHHHHHHhhcCCeEEEEeeeccccCcceEE
Q 010710 303 SPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMH-TRLYLRVLNEYQQIQSFSAFNSIFNNTGLFG 381 (503)
Q Consensus 303 ~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~~~~~gg~g~g~~-s~L~~~lR~~~~~~Y~~~a~~~~~~~~~~f~ 381 (503)
.+...+.+.|..+.............++.+++..|.. + +. ..+. +..+..|..++++.. .-.+.
T Consensus 42 ~~~~~~~~~~~~Gs~~e~~~~~g~a~lle~~~~~gt~-------~-~~~~~~~-~~l~~~G~~~na~t~------~~~t~ 106 (439)
T 1pp9_B 42 APASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTK-------G-ASSFKIT-RGIEAVGGKLSVTST------RENMA 106 (439)
T ss_dssp CSEEEEEEEESCSGGGCCTTSTTHHHHHHHTTTSCBS-------S-SCHHHHH-HHHHHTTCEEEEEEC------SSCEE
T ss_pred CceEEEEEEEeccccCCCCCcCcHHHHHHHhhcCCCC-------c-CCHHHHH-HHHHHhCCeEEEEec------ceEEE
Confidence 4556666777766411122356777888888864321 1 11 2343 333455654443322 23456
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhCCc--CCHHHHHH
Q 010710 382 IYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGER--KSVDQFLS 459 (503)
Q Consensus 382 i~~~~~p~~~~~~~~~~~~~l~~~~~~g~i~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~ 459 (503)
+++.+.+++...+++.+.+.+... .+++++|++.|..++..+....+++...+.......+ ++.+ .+.....+
T Consensus 107 ~~~~~~~~~l~~~l~ll~~~~~~p----~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~g~~~ 181 (439)
T 1pp9_B 107 YTVECLRDDVDILMEFLLNVTTAP----EFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAA-YRNALANSLYCPDY 181 (439)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHCB----CCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHH-BSSGGGSCSSCCGG
T ss_pred EEEEeehhhHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH-hcCCCCCCccCCHH
Confidence 677788888888888777766543 4999999999999999988877777776655554544 3221 11122345
Q ss_pred HHccCCHHHHHHHHHHhhcCCceEEEEccCCCCHHHHHhHh
Q 010710 460 VLEHITLDDITNIAQKIISSPLTMASYVINVPGYESVSSKF 500 (503)
Q Consensus 460 ~i~~vT~~di~~~a~~~l~~~~~~~~~~~~~p~~~~~~~~~ 500 (503)
.|+++|.+|++++.++++.+....++++.+ +.+++.+.+
T Consensus 182 ~l~~it~~~l~~f~~~~y~~~~~~l~v~G~--~~~~~~~~~ 220 (439)
T 1pp9_B 182 RIGKVTPVELHDYVQNHFTSARMALIGLGV--SHPVLKQVA 220 (439)
T ss_dssp GTTTCCHHHHHHHHHHHCSGGGEEEEEESS--CHHHHHHHH
T ss_pred HHhhcCHHHHHHHHHHhCCCCceEEEEeCC--CHHHHHHHH
Confidence 789999999999999999876665555555 677766543
No 33
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=97.52 E-value=0.0051 Score=62.52 Aligned_cols=178 Identities=12% Similarity=0.006 Sum_probs=115.1
Q ss_pred CCCceEEEEEeeeCCCCCCCchhHHHHHHHHhcCCCCCCCCCCCCCCcc-cHHHHHHHhhcCCeEEEEeeeccccCcceE
Q 010710 302 DSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMH-TRLYLRVLNEYQQIQSFSAFNSIFNNTGLF 380 (503)
Q Consensus 302 ~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~~~~~gg~g~g~~-s~L~~~lR~~~~~~Y~~~a~~~~~~~~~~f 380 (503)
+.+.+.+.+.+..+.............++.+++..|.. .+. ..+... .+..|..+.++.. . -..
T Consensus 23 ~~~~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~--------~~~~~~~~~~-le~~G~~~na~t~--~----d~t 87 (475)
T 1hr6_A 23 PGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTE--------HVEGRAMAET-LELLGGNYQCTSS--R----ENL 87 (475)
T ss_dssp CCSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBT--------TBCHHHHHHH-HHHTTSCEEEEEC--S----SCE
T ss_pred CCCEEEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCC--------CCCHHHHHHH-HHHcCCEEEEEEc--c----CeE
Confidence 35677777888776411123456777788888875421 011 233333 3455654444322 1 235
Q ss_pred EEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhCCcC--CHHHHH
Q 010710 381 GIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERK--SVDQFL 458 (503)
Q Consensus 381 ~i~~~~~p~~~~~~~~~~~~~l~~~~~~g~i~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~ 458 (503)
.+++.+.+++...+++.+.+.+... .+++++|++.|..++..+....+++...+.......+..+.+. +..-..
T Consensus 88 ~y~~~~~~~~l~~~l~ll~d~~~~p----~f~~~~~~~er~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~ 163 (475)
T 1hr6_A 88 MYQASVFNQDVGKMLQLMSETVRFP----KITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPR 163 (475)
T ss_dssp EEEEEECGGGHHHHHHHHHHHHHCB----CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCG
T ss_pred EEEEEecHHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCH
Confidence 6677788888888888777766543 4999999999999999998877788777766655555433321 112234
Q ss_pred HHHccCCHHHHHHHHHHhhcCCceEEEEccCCCCHHHHHhHh
Q 010710 459 SVLEHITLDDITNIAQKIISSPLTMASYVINVPGYESVSSKF 500 (503)
Q Consensus 459 ~~i~~vT~~di~~~a~~~l~~~~~~~~~~~~~p~~~~~~~~~ 500 (503)
+.|+++|.+|++++.++++.+...+++++. + +.+++.+.+
T Consensus 164 ~~l~~it~~~l~~f~~~~y~p~n~~l~v~G-~-d~~~~~~~i 203 (475)
T 1hr6_A 164 GLIPSISKYYLLDYRNKFYTPENTVAAFVG-V-PHEKALELT 203 (475)
T ss_dssp GGGGGCCHHHHHHHHHHHCCGGGEEEEEES-S-CHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHhCCcccEEEEEeC-C-CHHHHHHHH
Confidence 678999999999999999987666655554 4 456665443
No 34
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=97.51 E-value=0.0031 Score=62.81 Aligned_cols=183 Identities=14% Similarity=0.072 Sum_probs=113.3
Q ss_pred CCceEEEEEeeeCCCCCCCchhHHHHHHHHhcCCCCCCCCCCCCCCc-ccHHHHHHHhhc-CCeEEEEeeeccccCcceE
Q 010710 303 SPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGM-HTRLYLRVLNEY-QQIQSFSAFNSIFNNTGLF 380 (503)
Q Consensus 303 ~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~~~~~gg~g~g~-~s~L~~~lR~~~-~~~Y~~~a~~~~~~~~~~f 380 (503)
.+...+.+.|..+. .. +......++.+++..|.. ++ ...-+.+..+.. |..++++... ......+
T Consensus 22 ~~~~~~~~~~~~g~--~~-e~~g~a~ll~~~l~~gt~--------~~~~~~~~~~~l~~~~G~~~~a~t~~--~~t~~~~ 88 (425)
T 3d3y_A 22 YKTVRLLVRFNTRL--NH-ETITKRTLLSSLMETNSL--------NYPNQVKLSERLAELYGASFGIGVSK--KGNQHWF 88 (425)
T ss_dssp CSEEEEEEEEEEEC--CT-TTHHHHHHHHHHHHHCCS--------SSCSHHHHHHHHHHTTSCEEEEEEEE--ETTEEEE
T ss_pred cceEEEEEEEeCCC--Cc-cchhHHHHHHHHHHhhhh--------cCCCHHHHHHHHHHHhCceEeeeeee--cCceEEE
Confidence 46778888888875 33 335667788888764321 11 122233344443 6655555442 2122235
Q ss_pred EEEEEeCcc-------hHHHHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHH-hCCc
Q 010710 381 GIYACTGSD-------FVSKAVDLVVRELILIA-TPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILT-YGER 451 (503)
Q Consensus 381 ~i~~~~~p~-------~~~~~~~~~~~~l~~~~-~~g~i~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~ 451 (503)
.+++.+.++ +...+++.+.+.+.... .++.+++++|++.|..++..+....+++...+.......+. .+.+
T Consensus 89 ~~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~ 168 (425)
T 3d3y_A 89 NISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVEDKQTYASLALQSVYFNQSED 168 (425)
T ss_dssp EEEEEEECGGGCSSCCHHHHHHHHHHHHHHSCSEETTEECHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTTTCTT
T ss_pred EEEEEecChhhccchhHHHHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhccCCCC
Confidence 556666554 57778877777665531 00118999999999999999888777777776555555554 2333
Q ss_pred C--CHHHHHHHHccCCHHHHHHHHHHhhcCCceEEEEccCCCCHHHHHhH
Q 010710 452 K--SVDQFLSVLEHITLDDITNIAQKIISSPLTMASYVINVPGYESVSSK 499 (503)
Q Consensus 452 ~--~~~~~~~~i~~vT~~di~~~a~~~l~~~~~~~~~~~~~p~~~~~~~~ 499 (503)
. +.....+.|+++|.+|++++.++++.+....++++.++. .+++.+.
T Consensus 169 ~~~~~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~-~~~~~~~ 217 (425)
T 3d3y_A 169 QKIPSFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGDVN-EAELVPL 217 (425)
T ss_dssp TTSCTTCCHHHHHHCCHHHHHHHHHHHHHHSEEEEEEEESCC-HHHHHHH
T ss_pred ccCCCCCCHHHHHhCCHHHHHHHHHHHHhcCCeEEEEECCCC-HHHHHHH
Confidence 2 122345678899999999999999987666555555554 4555443
No 35
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=97.33 E-value=0.01 Score=59.63 Aligned_cols=175 Identities=11% Similarity=0.065 Sum_probs=106.8
Q ss_pred CCceEEEEEeeeCCCCCCC--chhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEeeeccccCcceE
Q 010710 303 SPETHIALAFEVPGGWLKD--KEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLF 380 (503)
Q Consensus 303 ~~~~~v~~~~~~~~~~~~~--~~~~~~~vl~~lL~~~~~~~~gg~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~~~~~~f 380 (503)
.+...+.+.+.++. ... .......++.+++..|.. .-|. ..+. +..+..|. .+.++... + ..
T Consensus 26 ~~~v~~~~~~~~Gs--~~e~~~~~Glah~lehmlf~Gt~---~~~~----~~l~-~~l~~~g~--~~na~t~~--d--~t 89 (445)
T 3ami_A 26 APTLVHMVWYRVGS--MDETTGTTGVAHALEHMMFKGTK---DVGP----GEFS-KRVAAMGG--RDNAFTTR--D--YT 89 (445)
T ss_dssp SSEEEEEEEESCCG--GGCCTTCTTHHHHHHHHTTSCBS---SSCT----THHH-HHHHHTTC--EEEEEECS--S--CE
T ss_pred CCeEEEEEEEeecc--CCCCCCCccHHHHHHHhhcCCCC---CCCH----HHHH-HHHHHhCC--ccccccCC--C--eE
Confidence 45566667776654 332 345666677777764421 1111 3443 34445554 34444322 2 23
Q ss_pred EEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHH-ccCChHHHHHHHHHHHHHhCCcC--CHHHH
Q 010710 381 GIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLM-NLESRVIVSEDIGRQILTYGERK--SVDQF 457 (503)
Q Consensus 381 ~i~~~~~p~~~~~~~~~~~~~l~~~~~~g~i~~~el~~ak~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~--~~~~~ 457 (503)
.+++.+.+++...+++.+.+.+... .+++++|++.|..++..+.+ ..+++..++.......+..+.+. +.--.
T Consensus 90 ~y~~~~~~~~l~~~l~ll~d~~~~p----~f~~~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~ 165 (445)
T 3ami_A 90 AYYQQVPSSRLSDVMGLEADRMANL----VVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIGW 165 (445)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHCB----CCCHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSSGGGSCTTCC
T ss_pred EEEEECCHHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhccCCCCCCCCCCC
Confidence 3455667778877777776665443 49999999999999999884 44566666555544545333332 11123
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCceEEEEccCCCCHHHHHh
Q 010710 458 LSVLEHITLDDITNIAQKIISSPLTMASYVINVPGYESVSS 498 (503)
Q Consensus 458 ~~~i~~vT~~di~~~a~~~l~~~~~~~~~~~~~p~~~~~~~ 498 (503)
.+.|+++|.+|++++.++++.+....++++.++. .+++.+
T Consensus 166 ~e~l~~it~~~l~~f~~~~y~p~n~~l~vvGd~d-~~~~~~ 205 (445)
T 3ami_A 166 MNDIQNMTAQDVRDWYKRWYGPNNATVVVVGDVE-HEAVFR 205 (445)
T ss_dssp HHHHHHCCHHHHHHHHHHHCSGGGEEEEEEESCC-HHHHHH
T ss_pred HHHHhhCCHHHHHHHHHHhCCccceEEEEEcCCC-HHHHHH
Confidence 5678899999999999999987666666655554 344443
No 36
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=96.32 E-value=0.054 Score=55.19 Aligned_cols=175 Identities=11% Similarity=0.078 Sum_probs=100.1
Q ss_pred CCCCeEEEEEEEeccccCCCCCCCc-----HHHHHHHHHcccCCCCCHHHHHHHHHH---cCCeeeEee----ccceEEE
Q 010710 92 SVSPAASIGLYLDFGSVYETPSSCG-----ASNLLEKMAFKSTKNRSHLRIVREVEA---IGGSILASA----SREQMGY 159 (503)
Q Consensus 92 ~~~~~~~i~l~~~~G~~~e~~~~~g-----~a~l~~~l~~~gt~~~s~~~l~~~l~~---~g~~~~~~~----~~~~~~~ 159 (503)
.+.+...+.+.+++.....++ ... ...++..+++ ..+...+.. .|..++++. .++...+
T Consensus 262 ~~~~q~~v~l~~~~~~~~~~d-~~~l~~~~~~~v~~~iLg--------~~L~~~lre~~~~gl~y~~~s~~~~~~~~~~~ 332 (492)
T 3go9_A 262 EQAAQDTLSLMWDTPWHPIQD-SMALSRYWRSDLAREALF--------WHIKQVLEKNNQKNLKLGFDCRVQYQRAQCAI 332 (492)
T ss_dssp SSCSSEEEEEEEEEECCCCCS-HHHHHHHHHHHHHHHHHH--------HHHHHHHHHSCCTTCEEEEEEEEETTEEEEEE
T ss_pred CCCCCcEEEEEecCCCCCccc-HHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhccccccccCchhhhhhcceEE
Confidence 344556666666666544332 111 1245555553 134333433 454444332 3344567
Q ss_pred EEecccCCHHHHHHHHHHhhcC---CCCChHHHHHHHHHHHHHhHhhh-----CChHHHHHHHHHHHhcCCCCCCCCC--
Q 010710 160 SFDALKTYVPEMVELLVDCVRN---PVFLDWEVNEELRKLKSELGELH-----NNPQGLLLEAIHSTGYAGALGNPLL-- 229 (503)
Q Consensus 160 ~~~~~~~~l~~~l~ll~~~~~~---p~f~~~~~~~~k~~~~~e~~~~~-----~~p~~~~~~~~~~~~~~~~~~~~~~-- 229 (503)
.+.+..++.+++++.+...+.. -.|+++++++.|..++..+.... .++...+...+........++.+..
T Consensus 333 ~i~~~~~~~~~a~~~i~~el~~l~~~g~te~EL~~aK~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 412 (492)
T 3go9_A 333 HLNTPVENLTANMTFVARELAALRANGLSQAEFDALMTQKNDQLSKLFATYARTDTDILMSQRLRSQQSGVVDIAPEQYQ 412 (492)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTHHHHHHTCCHHHHHHHHHHHHHHTCCCBCHHHHH
T ss_pred EEEcCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcCCHHHHH
Confidence 7777788888888888776554 35999999999999888876432 2344444554444433323222210
Q ss_pred CC-hhhhcCCCHHHHHHHHHhhcCCCCeEEEEeC-CChH-HHHHHHHhh
Q 010710 230 AP-ESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLD-ELLPIAEPL 275 (503)
Q Consensus 230 ~~-~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-~~~~-~l~~l~~~~ 275 (503)
.. .+.|+++|.+++.++.++++.+....+++.+ -..+ .+..+...|
T Consensus 413 ~~~~~~i~~vT~edV~~~a~~~l~~~~~~vvvg~~~~~e~~~~~l~~~~ 461 (492)
T 3go9_A 413 KLRQAFLSGLTLAELNRELKQQLSQDTTLVLMQPKGEPEVNVKALQEIY 461 (492)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHTSCCEEEEEEETTSCCCCHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCCCCeEEEEcCCCCCCccHHHHHHHH
Confidence 01 1448899999999999999987655444444 3333 244444443
No 37
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=27.95 E-value=1e+02 Score=18.45 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=18.6
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHH
Q 010710 396 DLVVRELILIATPKQVTQVQLNRAKE 421 (503)
Q Consensus 396 ~~~~~~l~~~~~~g~i~~~el~~ak~ 421 (503)
.++..++..+.++| ++++|+.....
T Consensus 3 aalkselqalkkeg-fspeelaales 27 (48)
T 1g6u_A 3 AALKSELQALKKEG-FSPEELAALES 27 (48)
T ss_dssp HHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHH
Confidence 34567788888888 99999875543
No 38
>3ov5_A VIRB7 (XAC2622), uncharacterized protein; type IV secretion system component, bacteri membrane, xanthomonas axonopodis PV citri; 1.04A {Xanthomonas axonopodis PV}
Probab=25.58 E-value=69 Score=22.80 Aligned_cols=45 Identities=16% Similarity=0.181 Sum_probs=38.6
Q ss_pred HhcCCCCCCCCCCChhhhcCCCHHHHHHHHHhhcCCCCeEEEEeC
Q 010710 218 TGYAGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASG 262 (503)
Q Consensus 218 ~~~~~~~~~~~~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G 262 (503)
..|++++...+.+....|++.+.++...-..+.|.+..+++.+.|
T Consensus 30 l~Y~~~sDyTLy~~Vs~I~tt~~~~A~~eLs~~Y~aqgv~vsv~~ 74 (85)
T 3ov5_A 30 LSYNLPSDYTLIGPVSAISTTSVQQAATELSAVYAAQGVSVSVSA 74 (85)
T ss_dssp EEECSSSCCBCCGGGGGCEESCHHHHHHHHHHHHGGGTEEEEEET
T ss_pred eEecCccceeeehhhhhhhhhhHHHHHHHHHHHHHhCCeEEEEEC
Confidence 345777777777888999999999999999999999999999988
No 39
>2l4w_A Uncharacterized protein; type IV secretion system, VIRB7, N0 domain, membrane protein xanthomonas, lipoprotein; NMR {Xanthomonas axonopodis PV}
Probab=24.64 E-value=87 Score=23.67 Aligned_cols=45 Identities=16% Similarity=0.181 Sum_probs=39.1
Q ss_pred HhcCCCCCCCCCCChhhhcCCCHHHHHHHHHhhcCCCCeEEEEeC
Q 010710 218 TGYAGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASG 262 (503)
Q Consensus 218 ~~~~~~~~~~~~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G 262 (503)
..|++++...+.+..+.|+..+.++...-..+.|.+..+++.+.|
T Consensus 60 l~Y~~~~DyTLy~~vs~I~tt~~~qA~~ELs~iY~akgv~vsv~~ 104 (120)
T 2l4w_A 60 LSYNLPSDYTLIGPVSAISTTSVQQAATELSAVYAAQGVSVSVSA 104 (120)
T ss_dssp EEECCSSCCBCCSTTTTCCBSCHHHHHHHHHHHHGGGTEEEEECS
T ss_pred eeecCccceeeehhhhhhhhhhHHHHHHHHHHHHHhCCeEEEEEC
Confidence 345777777788888999999999999999999999999999988
Done!